Citrus Sinensis ID: 011351

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------49
Protein Sequence
MASVSNSLSFKHGLSLWCPQSPSLHRIRHSSAKNFQRRGFVVAYSSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIARAALPVEAAV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccEEEccccccEEccccccccccccccccEEEEcccHHHHHHHHHHHHcccccccEEEEcccccccccccccccccccccccccccccccccccccccccccHHHHHHcccEEEccccEEEEEccccEEEcccccEEccccEEEcccccccccccccccccccEEEEccHHHHHHHHHHHHccccEEEEcccHHHHHHHHHHHHccccEEEEccccccccccccHHHHHHHHHHHHHcccEEEcccEEEEEEEcccccEEEEEcccccEEEccEEEEccccccccHHHHHcccccccccEEEccccccccccEEEcccccccccccccccEEEccHHHHHHHHHHHHHHHHcccccccccccEEEccccccccccccEEEEEEEcccccEEEEEcccccEEEEEEEccEEEEEEEEcccHHHHHHHHHHHHccccccHHHHccccccHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccEEEEEcccHHHHHHHHHHHHccccccEEEEEccccccccccccccHHHHcccccccccccccEEEcccccccccHHHHHHcccEEEEccEEEEEcccccEEEEccccEEEccEEEEEccccccccccccccccccEEEEEcHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHHHccccEEEEEccccHHHHHccHHHHHHHHHHHHHcccEEEEccEEEEEEEccccEEEEEEEccccEEcccEEEEEEcccccHHHHHHccccEccccEEEccccccccccEEEEEccccccccccccEEEEEccHHHHHHHHHHHHHHHcccccccccccEEEccccEEEEEEEccccccccccccEEEEEccccccEEEEEEEccEEEEEEEccccHHHHHHHHHHHHccccccHHHHccccccHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
masvsnslsfkhglslwcpqspslhrirhsSAKNFQRRGFVVAYSSFANENREFVIVGGGNAAGYAARTFVehgmadgrlcivskeayapyerpaltkgylfpldkkparlpgfhtcvgsggerqtpewykekgiemiyqdpvtsidiEKQTLITNSGKLLKYGSLIvatgctasrfpekiggylpgvhyirdVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVgwkldttiifpenhllqrlftpSLAQRYEQLYQQNGVKFVKGASiknleagsdgrVAAVkledgstidadtivigigakptvspfervglnssvggiqvdgqfrtrmpgifaigdvaafplkmydrtarveHVDHARQSAQHCIKALLSAQthtydylpyFYSRVFEYEGSPRKVWWQFFgdnvgetieignfdpkiatFWIDSGKLKGVlvesgspeefqllptlarsqpfvdkakLQQASSVEEALEIARAALPVEAAV
Flexible Loop (DISEMBL)
masvsnslsfkhglsLWCPQSPSLHRIRHSSAKNFQRRGFVVAYSSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHtcvgsggerqtpeWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIknleagsdGRVAAVKledgstidaDTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIARAALPVEAAV
Low Complexity Region (SEG)
MASVSNSLSFKHGLSLWCPQSPSLHRIRHSSAKNFQRRGFVVAYSSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKvvvvgggYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIARAALPVEAAV
Disordered region (IsUnstruct)
***********HGLSLWCPQ****HRI****AKNFQRRGFVVAYSSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKGVLVE************************************************
Disordered Region (DISOPRED)
******S***KHGLSLWCPQSPSLHRIR*************************FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEI****L******
Disordered Region (DISEMBL)
***********HGLSLWCPQSPSLHRIRHSSAKNFQRRGFVVAYSSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEH********QHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIARAALPVEAAV
Disordered Region (DISPRO)
**********KHGLSLWCPQSPSLHRIRHSSAKNFQRRGFVVAYSSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIAR*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASVSNSLSFKHGLSLWCPQSPSLHRIRHSSAKNFQRRGFVVAYSSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIARAALPVEAAV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	488	2.2.26 [Sep-21-2011]
P92947	493	Monodehydroascorbate redu	yes	no	0.983	0.973	0.802	0.0
Q40977	433	Monodehydroascorbate redu	N/A	no	0.817	0.921	0.457	1e-105
Q43497	433	Monodehydroascorbate redu	N/A	no	0.823	0.928	0.451	1e-105
Q9LFA3	434	Probable monodehydroascor	no	no	0.823	0.926	0.425	5e-95
Q42711	434	Monodehydroascorbate redu	N/A	no	0.836	0.940	0.457	9e-95
Q93WJ8	435	Probable monodehydroascor	no	no	0.786	0.882	0.429	9e-94
Q9LK94	488	Probable monodehydroascor	no	no	0.780	0.780	0.427	1e-93
Q9SR59	441	Probable monodehydroascor	no	no	0.784	0.868	0.408	2e-87
P43494	427	Rhodocoxin reductase OS=R	yes	no	0.659	0.754	0.323	2e-39
P16640	422	Putidaredoxin reductase O	yes	no	0.678	0.784	0.306	1e-36

>sp|P92947|MDARP_ARATH Monodehydroascorbate reductase, chloroplastic OS=Arabidopsis thaliana GN=At1g63940 PE=2 SV=3

 Score =  789 bits (2038), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/486 (80%), Positives = 429/486 (88%), Gaps = 6/486 (1%)

Query: 1   MASVSNSLSFKHGLSLWCPQSPSLHR---IRHSS-AKNFQRRGFVVAYSSFANENREFVI 56
           MA  S +L  K GLSLWCP SPSL R    R S        R  V A  SFANENREFVI
Sbjct: 8   MALASTTLPTKSGLSLWCPSSPSLARRFPARFSPIGSRIASRSLVTA--SFANENREFVI 65

Query: 57  VGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT 116
           VGGGNAAGYAARTFVE+GMADGRLCIV+KEAYAPYERPALTK YLFP +KKPARLPGFHT
Sbjct: 66  VGGGNAAGYAARTFVENGMADGRLCIVTKEAYAPYERPALTKAYLFPPEKKPARLPGFHT 125

Query: 117 CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASR 176
           CVG GGERQTP+WYKEKGIE+IY+DPV   D EKQTL T++GK LKYGSLI+ATGCTASR
Sbjct: 126 CVGGGGERQTPDWYKEKGIEVIYEDPVAGADFEKQTLTTDAGKQLKYGSLIIATGCTASR 185

Query: 177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTII 236
           FP+KIGG+LPGVHYIR+VADAD+LI+SL KAKK+V+VGGGYIGMEVAAAAV W LDTTI+
Sbjct: 186 FPDKIGGHLPGVHYIREVADADSLIASLGKAKKIVIVGGGYIGMEVAAAAVAWNLDTTIV 245

Query: 237 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 296
           FPE+ LLQRLFTPSLAQ+YE+LY+QNGVKFVKGASI NLEAGSDGRV+AVKL DGSTI+A
Sbjct: 246 FPEDQLLQRLFTPSLAQKYEELYRQNGVKFVKGASINNLEAGSDGRVSAVKLADGSTIEA 305

Query: 297 DTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTAR 356
           DT+VIGIGAKP + PFE + +N S+GGIQVDG FRT  PGIFAIGDVAAFPLK+YDR  R
Sbjct: 306 DTVVIGIGAKPAIGPFETLAMNKSIGGIQVDGLFRTSTPGIFAIGDVAAFPLKIYDRMTR 365

Query: 357 VEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIE 416
           VEHVDHAR+SAQHC+K+LL+A T TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGET+E
Sbjct: 366 VEHVDHARRSAQHCVKSLLTAHTDTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETVE 425

Query: 417 IGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALE 476
           +GNFDPKIATFWI+SG+LKGVLVESGSPEEFQLLP LARSQP VDKAKL  ASSVEEALE
Sbjct: 426 VGNFDPKIATFWIESGRLKGVLVESGSPEEFQLLPKLARSQPLVDKAKLASASSVEEALE 485

Query: 477 IARAAL 482
           IA+AAL
Sbjct: 486 IAQAAL 491

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 6EC: .EC: 5EC: .EC: 4

>sp|Q40977|MDAR_PEA Monodehydroascorbate reductase OS=Pisum sativum PE=1 SV=1

 Score =  381 bits (978), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 193/422 (45%), Positives = 271/422 (64%), Gaps = 23/422 (5%)

Query: 53  EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLP 112
           +++I+GGG +AGYAAR FV+ G+  G L I+SKEA APYERPAL+K YLFP  + PARLP
Sbjct: 6   KYIIIGGGVSAGYAAREFVKQGVHPGELAIISKEAVAPYERPALSKAYLFP--ESPARLP 63

Query: 113 GFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGC 172
           GFHTCVGSGGER  PEWY EKGI++     + S D+  + L + +G+   Y +L++ATG 
Sbjct: 64  GFHTCVGSGGERLLPEWYSEKGIQLYLSTEIVSADLAAKFLKSANGEHFDYQTLVIATGS 123

Query: 173 TASRFPE--KIGGYLPGVHYIRDVADADALISSLEKAK--KVVVVGGGYIGMEVAAAAVG 228
              R  +   IG     + Y+R+V DAD L  ++++ K  K VVVGGGYIG+E++A    
Sbjct: 124 AVIRLTDFGVIGANAKNIFYLREVDDADKLYEAIKRKKNAKRVVVGGGYIGLELSAVLKL 183

Query: 229 WKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL 288
             LD T+++PE   + RLFT  +A  YE  Y   G+  +KG       A SDG V  VKL
Sbjct: 184 NDLDVTMVYPEPWCMPRLFTSEIAAFYEGYYANKGINIIKGTVAVGFTANSDGEVKEVKL 243

Query: 289 EDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPL 348
           +DG  ++AD +++G+G +P +S F +  +    GGI+ D  F+T +P ++A+GDVA FPL
Sbjct: 244 KDGRVLEADIVIVGVGGRPQISLF-KGQVEEQHGGIKTDSFFKTSVPDVYAVGDVATFPL 302

Query: 349 KMYDRTARVEHVDHARQSAQHCIKALLSAQ----THTYDYLPYFYSRVFEYEGSPRKVWW 404
           K+Y+   RVEHVDHAR+SA+   KA+ +A        YDYLPYFYSR F+       + W
Sbjct: 303 KLYNDVRRVEHVDHARKSAEQAAKAIFAADVGKSVEEYDYLPYFYSRSFD-------LSW 355

Query: 405 QFFGDNVGETIEIGNFD-----PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPF 459
           QF+GDNVGET+  G+ D     PK  T+WI  GK+ G  +E G+P+E + +  +AR++P 
Sbjct: 356 QFYGDNVGETVLFGDNDPASSKPKFGTYWIKEGKVVGAFLEGGTPDENKAIAKVARAKPA 415

Query: 460 VD 461
           V+
Sbjct: 416 VE 417

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Pisum sativum (taxid: 3888)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q43497|MDAR_SOLLC Monodehydroascorbate reductase OS=Solanum lycopersicum GN=AFRR PE=1 SV=1

 Score =  381 bits (978), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 192/425 (45%), Positives = 273/425 (64%), Gaps = 23/425 (5%)

Query: 47  FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDK 106
            A ++ ++VIVGGG +AGYAAR F + G+  G L I+SKEA APYERPAL+K YLFP  +
Sbjct: 1   MAEKSFKYVIVGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFP--E 58

Query: 107 KPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSL 166
             ARLPGFH CVGSGGERQ PEWY EKGI +I    +   D+  +TL++ +G+  KY +L
Sbjct: 59  GAARLPGFHVCVGSGGERQLPEWYAEKGISLILSTEIVKADLASKTLVSAAGESFKYQTL 118

Query: 167 IVATGCTASRFPE--KIGGYLPGVHYIRDVADADALISSLEKAK--KVVVVGGGYIGMEV 222
           ++ATG T  +  +    G     + Y+R++ DAD L+ +L+  K  K VVVGGGYIG+E+
Sbjct: 119 VIATGTTVLKLSDFGVQGADSKNIFYLREIDDADQLVEALKAKKNGKAVVVGGGYIGLEL 178

Query: 223 AAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR 282
           +A      ++  +++PE   + RLFT  +A  YE  Y+  GV  +KG      +   +G 
Sbjct: 179 SAVLRLNNIEVNMVYPEPWCMPRLFTEGIAAFYEGYYKNKGVNIIKGTVAVGFDTHPNGE 238

Query: 283 VAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGD 342
           V  VKL+DG  ++AD +V+G+GA+P  + F +  +    GGI+ D  F+T +P ++A+GD
Sbjct: 239 VKEVKLKDGRVLEADIVVVGVGARPLTTLF-KGQVEEEKGGIKTDAFFKTSVPDVYAVGD 297

Query: 343 VAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ----THTYDYLPYFYSRVFEYEGS 398
           VA FPLKMY+   RVEHVDH+R+SA+  +KA+ +++       YDYLPYFYSR F+    
Sbjct: 298 VATFPLKMYNEIRRVEHVDHSRKSAEQAVKAIFASEQGKSVDEYDYLPYFYSRAFD---- 353

Query: 399 PRKVWWQFFGDNVGETIEIGNFDPKIAT-----FWIDSGKLKGVLVESGSPEEFQLLPTL 453
              + WQF+GDNVGET+  G+ DP  AT     +WI  GK+ G  +ESGSPEE + +  +
Sbjct: 354 ---LSWQFYGDNVGETVLFGDADPNSATHKFGQYWIKDGKIVGAFLESGSPEENKAIAKV 410

Query: 454 ARSQP 458
           A+ QP
Sbjct: 411 AKVQP 415

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Solanum lycopersicum (taxid: 4081)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q9LFA3|MDAR3_ARATH Probable monodehydroascorbate reductase, cytoplasmic isoform 3 OS=Arabidopsis thaliana GN=At3g52880 PE=1 SV=1

 Score =  348 bits (894), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 181/425 (42%), Positives = 266/425 (62%), Gaps = 23/425 (5%)

Query: 47  FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDK 106
            A ++ +++I+GGG +AGYAA+ F   G+  G L ++SKEA APYERPAL+KGYLFP  +
Sbjct: 1   MAEKSFKYIILGGGVSAGYAAKEFANQGVQPGELAVISKEAVAPYERPALSKGYLFP--E 58

Query: 107 KPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSL 166
             ARLPGFH CVGSGGE+  PE YK+KGIE+I    +   D+  ++L++ +G + KY +L
Sbjct: 59  GAARLPGFHCCVGSGGEKLLPESYKQKGIELILSTEIVKADLSAKSLVSATGDVFKYQTL 118

Query: 167 IVATGCTASRFPE--KIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGG--YIGMEV 222
           I+ATG T  R  +    G     + Y+R++ DAD L+ +++  K    V  G  YIG+E+
Sbjct: 119 IIATGSTVLRLTDFGVKGADSKNILYLREIDDADKLVEAIKAKKGGKAVVVGGGYIGLEL 178

Query: 223 AAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR 282
           +A      LD T++FPE   + RLFT  +A  YE  Y   GVK +KG       A  +G 
Sbjct: 179 SAVLRINNLDVTMVFPEPWCMPRLFTADIAAFYETYYTNKGVKIIKGTVASGFTAQPNGE 238

Query: 283 VAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGD 342
           V  V+L+DG T++AD +++G+GAKP  S F +  +    GGI+ D  F+T +P ++A+GD
Sbjct: 239 VKEVQLKDGRTLEADIVIVGVGAKPLTSLF-KGQVEEDKGGIKTDAFFKTSVPDVYAVGD 297

Query: 343 VAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ----THTYDYLPYFYSRVFEYEGS 398
           VA FPLKMY    RVEHVDH+R+SA+  +KA+ +A+       YDYLP+FYSR F+    
Sbjct: 298 VATFPLKMYGDVRRVEHVDHSRKSAEQAVKAIKAAEGGAAVEEYDYLPFFYSRSFD---- 353

Query: 399 PRKVWWQFFGDNVGETIEIG-----NFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTL 453
              + WQF+GDNVG+++  G     N  P+   +W+  GK+ G  +E GS +E + L  +
Sbjct: 354 ---LSWQFYGDNVGDSVLFGDSNPSNPKPRFGAYWVQGGKVVGAFMEGGSGDENKALAKV 410

Query: 454 ARSQP 458
           A+++P
Sbjct: 411 AKARP 415

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q42711|MDARS_CUCSA Monodehydroascorbate reductase, seedling isozyme OS=Cucumis sativus PE=2 SV=1

 Score =  347 bits (891), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 198/433 (45%), Positives = 278/433 (64%), Gaps = 25/433 (5%)

Query: 47  FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDK 106
            A+E  ++VI+GGG AAGYAAR FV+ G+  G L I+SKEA APYERPAL+K YLFP  +
Sbjct: 1   MADETFKYVILGGGVAAGYAAREFVKQGLNPGELAIISKEAVAPYERPALSKAYLFP--E 58

Query: 107 KPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSL 166
            PARLPGFH CVGSGGER  P+WYKEKGIE+I    +   D+  + L +  GK+  Y +L
Sbjct: 59  SPARLPGFHVCVGSGGERLLPDWYKEKGIELILSTEIVEADLPAKRLRSAHGKIYNYQTL 118

Query: 167 IVATGCTASRFPE--KIGGYLPGVHYIRDVADADALISSLEKAKK---VVVVGGGYIGME 221
           I+ATG T  +  +    G     + Y+R++ DAD L+ ++ KAK+   VVVVGGGYIG+E
Sbjct: 119 IIATGSTVIKLSDFGVQGADAKNIFYLREIDDADQLVEAI-KAKENGKVVVVGGGYIGLE 177

Query: 222 VAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG 281
           + AA      D ++++PE   + RLFTP +A  YE  Y Q G+  +KG         ++G
Sbjct: 178 LGAALRINNFDVSMVYPEPWCMPRLFTPEIAAFYEGYYAQKGITIIKGTVAVGFTVDTNG 237

Query: 282 RVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIG 341
            V  VKL+DG  ++AD +V+G+GA+P  S F +  +    GGI+ D  F+T +P ++A+G
Sbjct: 238 EVKEVKLKDGRVLEADIVVVGVGARPLTSLF-KGQIVEEKGGIKTDEFFKTSVPDVYAVG 296

Query: 342 DVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ----THTYDYLPYFYSRVFEYEG 397
           DVA FPLK+Y+   RVEHVDH+R+SA+  +KA+ +++       YDYLPYFYSR F+   
Sbjct: 297 DVATFPLKLYNELRRVEHVDHSRKSAEQAVKAIKASEEGKAIEEYDYLPYFYSRSFD--- 353

Query: 398 SPRKVWWQFFGDNVGETIEIGNFDP-----KIATFWIDSGKLKGVLVESGSPEEFQLLPT 452
               + WQF+GDNVG+ +  G+  P     K  ++WI  GK+ G  +ESGSPEE + +  
Sbjct: 354 ----LSWQFYGDNVGDAVLFGDNSPDSATHKFGSYWIKDGKVVGAFLESGSPEENKAIAK 409

Query: 453 LARSQPFVDKAKL 465
           +AR QP V+ + L
Sbjct: 410 VARIQPSVESSDL 422

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Cucumis sativus (taxid: 3659)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q93WJ8|MDAR4_ARATH Probable monodehydroascorbate reductase, cytoplasmic isoform 4 OS=Arabidopsis thaliana GN=At5g03630 PE=1 SV=1

 Score =  344 bits (882), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 175/407 (42%), Positives = 251/407 (61%), Gaps = 23/407 (5%)

Query: 68  RTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 127
           R F   G+  G L I+S+E   PYERPAL+KGY+   +K  A LP F+   G GGERQ P
Sbjct: 23  REFFNQGVKPGELAIISREQVPPYERPALSKGYIHLENK--ATLPNFYVAAGIGGERQFP 80

Query: 128 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPE--KIGGYL 185
           +WYKEKGIE+I    +   D+  +TL++ +G++ KY +L+ ATG +  R  +    G   
Sbjct: 81  QWYKEKGIELILGTEIVKADLAAKTLVSGTGQVFKYQTLLAATGSSVIRLSDFGVPGADA 140

Query: 186 PGVHYIRDVADADALISSLEKAKK--VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL 243
             + Y+R++ DAD L  ++E  +K   VVVGGGYIG+E+ AA     LD T+++PE   +
Sbjct: 141 KNIFYLRELEDADYLAYAMETKEKGKAVVVGGGYIGLELGAALKANNLDVTMVYPEPWCM 200

Query: 244 QRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGI 303
            RLFT  +A  YE  Y   G+  VKG         S+G V  VKL+DG T++AD +++G+
Sbjct: 201 PRLFTAGIASFYEGYYANKGINIVKGTVASGFTTNSNGEVTEVKLKDGRTLEADIVIVGV 260

Query: 304 GAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHA 363
           G +P +S F +  +    GG++ DG F+T +P ++AIGDVA FP+K+Y+   RVEHVDHA
Sbjct: 261 GGRPIISLF-KDQVEEEKGGLKTDGFFKTSLPDVYAIGDVATFPMKLYNEMRRVEHVDHA 319

Query: 364 RQSAQHCIKALLSAQTHT----YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGN 419
           R+SA+  +KA+ +A+       YDYLPYFYSR F+       + WQF+GDNVGE++  G+
Sbjct: 320 RKSAEQAVKAIKAAEEGNSIPEYDYLPYFYSRAFD-------LSWQFYGDNVGESVLFGD 372

Query: 420 FD-----PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVD 461
            D     PK  ++WI   K+ G  +E GSPEE   +  LAR+QP V+
Sbjct: 373 NDPESPKPKFGSYWIKERKVVGAFLEGGSPEENNAIAKLARAQPSVE 419

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q9LK94|MDAR2_ARATH Probable monodehydroascorbate reductase, cytoplasmic isoform 2 OS=Arabidopsis thaliana GN=At3g27820 PE=2 SV=1

 Score =  343 bits (881), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 170/398 (42%), Positives = 255/398 (64%), Gaps = 17/398 (4%)

Query: 70  FVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129
           F   G++DG LCI+S+E  APYERPAL+KG+L P  + PARLP FHTCVG+  E+ TP+W
Sbjct: 23  FTRRGVSDGELCIISEEPVAPYERPALSKGFLLP--EAPARLPSFHTCVGANDEKLTPKW 80

Query: 130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPE--KIGGYLPG 187
           YK+ GIE++    V S+D+ ++TL++++G+ + Y  LI+ATG  A +  E    G     
Sbjct: 81  YKDHGIELVLGTRVKSVDVRRKTLLSSTGETISYKFLIIATGARALKLEEFGVEGSDAEN 140

Query: 188 VHYIRDVADADALISSLEKAKK--VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR 245
           V Y+RD+ADA+ L + ++ +     VV+GGGYIGME AA+ V  K++ T++FPE H + R
Sbjct: 141 VCYLRDLADANRLATVIQSSSNGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR 200

Query: 246 LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 305
           LFTP +A  YE  Y+  GVKF+KG  + + E  S+ +V AV L+DGS + AD +V+GIG 
Sbjct: 201 LFTPKIASLYEDYYRAKGVKFIKGTVLTSFEFDSNKKVTAVNLKDGSHLPADLVVVGIGI 260

Query: 306 KPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQ 365
           +P  S FE   L    GGI+V+ + ++    ++AIGDVA FP+K++    R+EHVD AR+
Sbjct: 261 RPNTSLFEG-QLTIEKGGIKVNSRMQSSDSSVYAIGDVATFPVKLFGEMRRLEHVDSARK 319

Query: 366 SAQHCIKALLS-AQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFD--P 422
           SA+H + A++   +T  +DYLP+FYSRVF +        WQF+GD  G+ +  G ++   
Sbjct: 320 SARHAVSAIMDPIKTGDFDYLPFFYSRVFAFS-------WQFYGDPTGDVVHFGEYEDGK 372

Query: 423 KIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFV 460
               +W+  G L G  +E G+ EE++ +    + +P V
Sbjct: 373 SFGAYWVKKGHLVGSFLEGGTKEEYETISKATQLKPAV 410

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q9SR59|MDAR1_ARATH Probable monodehydroascorbate reductase, cytoplasmic isoform 1 OS=Arabidopsis thaliana GN=At3g09940 PE=2 SV=1

 Score =  323 bits (829), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 167/409 (40%), Positives = 248/409 (60%), Gaps = 26/409 (6%)

Query: 68  RTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 127
           R F   G+  G L I+SKE   P+ERP LTK Y+  L+  P  L   + C G+G  +Q P
Sbjct: 23  REFSNQGLKPGELAIISKEPVPPFERPELTKVYI-DLEVNPT-LANIYVCAGTGEAKQYP 80

Query: 128 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIG---GY 184
            WYKEKGI++I    +   D+  +TL+++ GK+ KY +L++ATG T  R  E IG     
Sbjct: 81  NWYKEKGIDLIVGTEIVKADLASKTLVSDDGKIYKYQTLLIATGSTNIRLSE-IGVQEAD 139

Query: 185 LPGVHYIRDVADADALISSLE---KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH 241
           +  + Y+R++ D+D L  ++E   +  K V++GGG++G+E+++A      + T++FPE  
Sbjct: 140 VKNIFYLREIEDSDELALAMELYVQRGKAVIIGGGFLGLEISSALRANNHEVTMVFPEPW 199

Query: 242 LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 301
           L+ R FT  +A  YE  Y   G+K +KG         SDG V  VKLEDG T++A+ +V 
Sbjct: 200 LVHRFFTAEIASFYESYYANKGIKIIKGTVATGFSTNSDGEVTEVKLEDGRTLEANIVVA 259

Query: 302 GIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVD 361
           G+GA+P  S F +  L    GGI+ DG F+T +P ++A+GDVA FP+KMY  T RVEH D
Sbjct: 260 GVGARPATSLF-KGQLEEEKGGIKTDGFFKTSVPDVYALGDVATFPMKMYGGTRRVEHAD 318

Query: 362 HARQSAQHCIKALLSAQTHT----YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEI 417
           +AR+SA   +KA+ + +       YDYLPYFYSR F       K+ W+F+G+NVGE++  
Sbjct: 319 NARKSAAQAVKAIKAGEEGKTIPDYDYLPYFYSRFF-------KLSWEFYGENVGESVLF 371

Query: 418 GNFD-----PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVD 461
           G+ D     PK  T+W+  GK+ GV +E G+ EE + +  +AR+QP V+
Sbjct: 372 GDNDPKSPKPKFGTYWVKDGKVVGVFLEGGTQEEHKAIAKVARAQPSVE 420

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|P43494|THCD_RHOER Rhodocoxin reductase OS=Rhodococcus erythropolis GN=thcD PE=1 SV=2

 Score =  163 bits (413), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 111/343 (32%), Positives = 167/343 (48%), Gaps = 21/343 (6%)

Query: 54  FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLF--PLDKKPARL 111
            VI+G G A   AA +   HG + G + +V  E   PY+RP L+K YL   P  +  A  
Sbjct: 3   IVIIGSGQAGFEAAVSLRSHGFS-GTITLVGDEPGVPYQRPPLSKAYLHSDPDRESLALR 61

Query: 112 PGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATG 171
           P               +++ +  I +    PV  ID + Q +       ++Y  LI+ATG
Sbjct: 62  PA--------------QYFDDHRITLTCGKPVVRIDRDAQRVELIDATAIEYDHLILATG 107

Query: 172 CTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKL 231
                 P   G  LPGVHY+R   +A++L SS+     +VV+G G+IG+EVAAAA    L
Sbjct: 108 ARNRLLPVP-GANLPGVHYLRTAGEAESLTSSMASCSSLVVIGAGFIGLEVAAAARKKGL 166

Query: 232 DTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG 291
           D T++   +  + R  +  ++  +   + ++GV       +K + A +DGR A V    G
Sbjct: 167 DVTVVEAMDRPMARALSSVMSGYFSTAHTEHGVHMRLSTGVKTINA-ADGRAAGVTTNSG 225

Query: 292 STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMY 351
             I AD +V+GIG  P +      GL     GI VD   RT    I AIGD AA+P+   
Sbjct: 226 DVIHADAVVVGIGVVPNIELAALTGLPVD-NGIVVDEYLRTPDENISAIGDCAAYPIPGK 284

Query: 352 DRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFE 394
               R+E V +A   A+ C+ A L+  +  Y  +P+F+S  +E
Sbjct: 285 AGLVRLESVQNAVDQAR-CLAAQLTGTSTHYRSVPWFWSEQYE 326

The degradation of the thiocarbamate herbicide EPTC by cytochrome CYP116 (thcB) requires the participation of a flavoprotein, rhodocoxin reductase, and an iron-sulfur protein, rhodocoxin, to mediate the transfer of electrons from NADH to P450 for oxygen activation.

Rhodococcus erythropolis (taxid: 1833)

EC: 1

EC: .

EC: 1

EC: 8

EC: .

EC: 1

EC: .

EC: -

>sp|P16640|CAMA_PSEPU Putidaredoxin reductase OS=Pseudomonas putida GN=camA PE=1 SV=1

 Score =  154 bits (390), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 107/349 (30%), Positives = 171/349 (48%), Gaps = 18/349 (5%)

Query: 49  NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKP 108
           N N   VIVG G A    A      G  +G + +V      P+  P L+K YL       
Sbjct: 2   NANDNVVIVGTGLAGVEVAFGLRASGW-EGNIRLVGDATVIPHHLPPLSKAYL----AGK 56

Query: 109 ARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIV 168
           A     +         +TP+ Y  + I+++    VT+I+ ++Q +I + G+ L Y  L++
Sbjct: 57  ATAESLYL--------RTPDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVL 108

Query: 169 ATGCTASRFPEKIG--GYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAA 226
           ATG      P   G  G      Y+R + DA+ +   L    ++VV+GGGYIG+EVAA A
Sbjct: 109 ATGGRPRPLPVASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATA 168

Query: 227 VGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD-GRVAA 285
           +   +  T++     +L+R+  P ++  YE L+++ GV    G  +   E  +D  +V A
Sbjct: 169 IKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTA 228

Query: 286 VKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 345
           V  EDG+ + AD ++ GIG  P        GL     GI ++   +T  P I A+GD A 
Sbjct: 229 VLCEDGTRLPADLVIAGIGLIPNCELASAAGLQVD-NGIVINEHMQTSDPLIMAVGDCAR 287

Query: 346 FPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFE 394
           F  ++YDR  R+E V +A + A+  I A+L  +    +  P+F+S  +E
Sbjct: 288 FHSQLYDRWVRIESVPNALEQARK-IAAILCGKVPRDEAAPWFWSDQYE 335

The oxidation of camphor by cytochrome P450-CAM requires the participation of a flavoprotein, putidaredoxin reductase, and an iron-sulfur protein, putidaredoxin, to mediate the transfer of electrons from NADH to P450 for oxygen activation.

Pseudomonas putida (taxid: 303)

EC: 1

EC: .

EC: 1

EC: 8

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	488
359474156	497	PREDICTED: monodehydroascorbate reductas	1.0	0.981	0.836	0.0
297742237	490	unnamed protein product [Vitis vinifera]	1.0	0.995	0.836	0.0
147834040	889	hypothetical protein VITISV_021486 [Viti	1.0	0.548	0.815	0.0
224058437	497	predicted protein [Populus trichocarpa]	0.987	0.969	0.828	0.0
194716776	486	monodehydroascorbate reductase [Picrorhi	0.983	0.987	0.816	0.0
255537579	493	monodehydroascorbate reductase, putative	0.983	0.973	0.845	0.0
350536875	482	monodehydroascorbate reductase [Solanum	0.987	1.0	0.817	0.0
110265126	482	chloroplast monodehydroascorbate reducta	0.987	1.0	0.815	0.0
46093473	486	monodehydroascorbate reductase [Brassica	0.983	0.987	0.808	0.0
30696924	493	Monodehydroascorbate reductase [Arabidop	0.983	0.973	0.802	0.0

>gi|359474156|ref|XP_002278648.2| PREDICTED: monodehydroascorbate reductase, chloroplastic [Vitis vinifera]

 Score =  841 bits (2172), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/490 (83%), Positives = 451/490 (92%), Gaps = 2/490 (0%)

Query: 1   MASVSNSLSFKHGLSLWCPQSPSLHRIRHSSA--KNFQRRGFVVAYSSFANENREFVIVG 58
           MAS+SNSL  KHG+SLWCPQ  SL+R R  S+   +   R + V   +FANENREFVIVG
Sbjct: 8   MASISNSLPLKHGISLWCPQHASLNRTRLPSSFGSSASARRYGVVSCAFANENREFVIVG 67

Query: 59  GGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCV 118
           GGNAAGYAARTFVEHGMADG+LCIVSKEA+APYERPALTKGYLFPLDKKPARLPGFHTCV
Sbjct: 68  GGNAAGYAARTFVEHGMADGKLCIVSKEAFAPYERPALTKGYLFPLDKKPARLPGFHTCV 127

Query: 119 GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP 178
           GSGGERQTP+WYKEKGIEM+Y+DPVT IDIEKQTL+TNSGKLLKYGSLI+ATGCTASR P
Sbjct: 128 GSGGERQTPDWYKEKGIEMLYEDPVTGIDIEKQTLMTNSGKLLKYGSLIIATGCTASRLP 187

Query: 179 EKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFP 238
           +KIGG LPGVHYIRDVADAD+LISSLEKA+KVV+VGGGYIGMEVAAAA GWKLDTTIIFP
Sbjct: 188 DKIGGNLPGVHYIRDVADADSLISSLEKARKVVIVGGGYIGMEVAAAAAGWKLDTTIIFP 247

Query: 239 ENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADT 298
           E+HLLQRLFTP+LA+RYE+ YQ+NGVKFVKGASIKN+EAGSDG V AVKLE+GSTI+ADT
Sbjct: 248 EDHLLQRLFTPTLARRYEEFYQENGVKFVKGASIKNIEAGSDGHVTAVKLENGSTIEADT 307

Query: 299 IVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVE 358
           I+IGIGAKP VSPFERVG+N++VGGIQVDGQFRT +PGIFAIGDVAAFPLKMY+R ARVE
Sbjct: 308 IIIGIGAKPAVSPFERVGINTTVGGIQVDGQFRTSVPGIFAIGDVAAFPLKMYNRIARVE 367

Query: 359 HVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIG 418
           HVDHAR+SAQHCI ALL+A+TH YDYLPYFYSRVFEYEGSPRK+WWQFFGDNVGET+EIG
Sbjct: 368 HVDHARRSAQHCINALLTAKTHLYDYLPYFYSRVFEYEGSPRKIWWQFFGDNVGETVEIG 427

Query: 419 NFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIA 478
           NFDPKIATFWIDSGKLKGVL+ESGSPEEFQLLP LARSQP VD  KLQ+ASSVEEALE+A
Sbjct: 428 NFDPKIATFWIDSGKLKGVLLESGSPEEFQLLPKLARSQPHVDMTKLQKASSVEEALELA 487

Query: 479 RAALPVEAAV 488
            A +   AAV
Sbjct: 488 HAYVQAGAAV 497

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742237|emb|CBI34386.3| unnamed protein product [Vitis vinifera]

 Score =  840 bits (2169), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/490 (83%), Positives = 451/490 (92%), Gaps = 2/490 (0%)

Query: 1   MASVSNSLSFKHGLSLWCPQSPSLHRIRHSSA--KNFQRRGFVVAYSSFANENREFVIVG 58
           MAS+SNSL  KHG+SLWCPQ  SL+R R  S+   +   R + V   +FANENREFVIVG
Sbjct: 1   MASISNSLPLKHGISLWCPQHASLNRTRLPSSFGSSASARRYGVVSCAFANENREFVIVG 60

Query: 59  GGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCV 118
           GGNAAGYAARTFVEHGMADG+LCIVSKEA+APYERPALTKGYLFPLDKKPARLPGFHTCV
Sbjct: 61  GGNAAGYAARTFVEHGMADGKLCIVSKEAFAPYERPALTKGYLFPLDKKPARLPGFHTCV 120

Query: 119 GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP 178
           GSGGERQTP+WYKEKGIEM+Y+DPVT IDIEKQTL+TNSGKLLKYGSLI+ATGCTASR P
Sbjct: 121 GSGGERQTPDWYKEKGIEMLYEDPVTGIDIEKQTLMTNSGKLLKYGSLIIATGCTASRLP 180

Query: 179 EKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFP 238
           +KIGG LPGVHYIRDVADAD+LISSLEKA+KVV+VGGGYIGMEVAAAA GWKLDTTIIFP
Sbjct: 181 DKIGGNLPGVHYIRDVADADSLISSLEKARKVVIVGGGYIGMEVAAAAAGWKLDTTIIFP 240

Query: 239 ENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADT 298
           E+HLLQRLFTP+LA+RYE+ YQ+NGVKFVKGASIKN+EAGSDG V AVKLE+GSTI+ADT
Sbjct: 241 EDHLLQRLFTPTLARRYEEFYQENGVKFVKGASIKNIEAGSDGHVTAVKLENGSTIEADT 300

Query: 299 IVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVE 358
           I+IGIGAKP VSPFERVG+N++VGGIQVDGQFRT +PGIFAIGDVAAFPLKMY+R ARVE
Sbjct: 301 IIIGIGAKPAVSPFERVGINTTVGGIQVDGQFRTSVPGIFAIGDVAAFPLKMYNRIARVE 360

Query: 359 HVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIG 418
           HVDHAR+SAQHCI ALL+A+TH YDYLPYFYSRVFEYEGSPRK+WWQFFGDNVGET+EIG
Sbjct: 361 HVDHARRSAQHCINALLTAKTHLYDYLPYFYSRVFEYEGSPRKIWWQFFGDNVGETVEIG 420

Query: 419 NFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIA 478
           NFDPKIATFWIDSGKLKGVL+ESGSPEEFQLLP LARSQP VD  KLQ+ASSVEEALE+A
Sbjct: 421 NFDPKIATFWIDSGKLKGVLLESGSPEEFQLLPKLARSQPHVDMTKLQKASSVEEALELA 480

Query: 479 RAALPVEAAV 488
            A +   AAV
Sbjct: 481 HAYVQAGAAV 490

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147834040|emb|CAN64338.1| hypothetical protein VITISV_021486 [Vitis vinifera]

 Score =  834 bits (2154), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/503 (81%), Positives = 451/503 (89%), Gaps = 15/503 (2%)

Query: 1   MASVSNSLSFKHGLSLWCPQSPSLHRIRHSSA--KNFQRRGFVVAYSSFANENREFVIVG 58
           MAS+SNSL  KHG+SLWCPQ  SL+R R  S+   +   R + V   +FANENREFVIVG
Sbjct: 387 MASISNSLPLKHGISLWCPQHASLNRTRLPSSFGSSASARRYGVVSCAFANENREFVIVG 446

Query: 59  GGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCV 118
           GGNAAGYAARTFVEHGMADG+LCIVSKEA+APYERPALTKGYLFPLDKKPARLPGFHTCV
Sbjct: 447 GGNAAGYAARTFVEHGMADGKLCIVSKEAFAPYERPALTKGYLFPLDKKPARLPGFHTCV 506

Query: 119 GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASR-- 176
           GSGGERQTP+WYKEKGIEM+Y+DPVT IDIEKQTL+TNSGKLLKYGSLI+ATGCTASR  
Sbjct: 507 GSGGERQTPDWYKEKGIEMLYEDPVTGIDIEKQTLMTNSGKLLKYGSLIIATGCTASRRS 566

Query: 177 -----------FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAA 225
                       P+KIGG LPGVHYIRDVADAD+LISSLEKA+KVV+VGGGYIGMEVAAA
Sbjct: 567 EDEFFSSPDFRLPDKIGGNLPGVHYIRDVADADSLISSLEKARKVVIVGGGYIGMEVAAA 626

Query: 226 AVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 285
           A GWKLDTTIIFPE+HLLQRLFTP+LA+RYE+ YQ+NGVKFVKGASIKN+EAGSDG V A
Sbjct: 627 AAGWKLDTTIIFPEDHLLQRLFTPTLARRYEEFYQENGVKFVKGASIKNIEAGSDGHVTA 686

Query: 286 VKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 345
           VKLE+GSTI+ADTI+IGIGAKP VSPFERVG+N++VGGIQVDGQFRT +PGIFAIGDVAA
Sbjct: 687 VKLENGSTIEADTIIIGIGAKPAVSPFERVGINTTVGGIQVDGQFRTSVPGIFAIGDVAA 746

Query: 346 FPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQ 405
           FPLKMY+R ARVEHVDHAR+SAQHCI ALL+A+TH YDYLPYFYSRVFEYEGSPRK+WWQ
Sbjct: 747 FPLKMYNRIARVEHVDHARRSAQHCINALLTAKTHLYDYLPYFYSRVFEYEGSPRKIWWQ 806

Query: 406 FFGDNVGETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKL 465
           FFGDNVGET+EIGNFDPKIATFWIDSGKLKGVL+ESGSPEEFQLLP LARSQP VD  KL
Sbjct: 807 FFGDNVGETVEIGNFDPKIATFWIDSGKLKGVLLESGSPEEFQLLPKLARSQPQVDMTKL 866

Query: 466 QQASSVEEALEIARAALPVEAAV 488
           Q+ASSVEEALE+A A +   AAV
Sbjct: 867 QKASSVEEALELAHATVQAGAAV 889

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224058437|ref|XP_002299509.1| predicted protein [Populus trichocarpa] gi|118488230|gb|ABK95934.1| unknown [Populus trichocarpa] gi|222846767|gb|EEE84314.1| predicted protein [Populus trichocarpa]

 Score =  828 bits (2138), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/491 (82%), Positives = 447/491 (91%), Gaps = 9/491 (1%)

Query: 5   SNSLSFKHGLSLWCPQSPSLHRIRHSSA------KNFQRRGFVVAYSS-FANENREFVIV 57
           SN +SFKHGLSLWCPQS  LHR   SS       K F R   V A SS FANENRE+VIV
Sbjct: 9   SNPMSFKHGLSLWCPQSSPLHRTLQSSPSSSIGFKTFFRNHVVAASSSSFANENREYVIV 68

Query: 58  GGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTC 117
           GGGNAAGYAAR+FVEHGMADG+LCIV++EAYAPYERPALTK YLFPLDKKPARLPGFHTC
Sbjct: 69  GGGNAAGYAARSFVEHGMADGKLCIVTREAYAPYERPALTKAYLFPLDKKPARLPGFHTC 128

Query: 118 VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRF 177
           VGSGGERQTP+WYKEKGIEM+Y+DPVT IDIEKQT  T SGKLLKYG+LIVATGC+ASRF
Sbjct: 129 VGSGGERQTPDWYKEKGIEMLYEDPVTGIDIEKQTATTISGKLLKYGTLIVATGCSASRF 188

Query: 178 PEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIF 237
           PEKIGG LPGVHYIRDVADAD+LISSLEKA K+V+VGGGYIGMEVAAAAV WKLDTTIIF
Sbjct: 189 PEKIGGNLPGVHYIRDVADADSLISSLEKAHKLVIVGGGYIGMEVAAAAVAWKLDTTIIF 248

Query: 238 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 297
           PENHL+QRLFTPSLAQ+YE+LYQ+NGVKF+KGASIKNLEA SDG VAA+KLE+GSTI+AD
Sbjct: 249 PENHLMQRLFTPSLAQKYEELYQENGVKFIKGASIKNLEASSDGHVAAIKLENGSTIEAD 308

Query: 298 TIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARV 357
            ++IGIGAKP V PFER+GLN+SVGGIQVDGQFRT +PGIFAIGDVAAFPLKMY+R ARV
Sbjct: 309 MVIIGIGAKPAVGPFERLGLNNSVGGIQVDGQFRTGIPGIFAIGDVAAFPLKMYNRMARV 368

Query: 358 EHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEI 417
           EHVDHAR+SAQHC+K+LL+A T +YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETI++
Sbjct: 369 EHVDHARRSAQHCVKSLLTAHTSSYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIQV 428

Query: 418 GNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEI 477
           GNFDPKIATFWIDSGKLKGVL+ESGSPEEFQLLP LA+SQP VDK+KLQ ASSVEEALEI
Sbjct: 429 GNFDPKIATFWIDSGKLKGVLLESGSPEEFQLLPELAKSQPIVDKSKLQSASSVEEALEI 488

Query: 478 ARAALPVEAAV 488
           AR +L  +AAV
Sbjct: 489 ARTSL--QAAV 497

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|194716776|gb|ACF93237.1| monodehydroascorbate reductase [Picrorhiza kurrooa]

 Score =  815 bits (2106), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/484 (81%), Positives = 440/484 (90%), Gaps = 4/484 (0%)

Query: 1   MASVSNSLSFKHGLSLWCPQSPSLHRIRHS---SAKNFQRRGFVVAYSSFANENREFVIV 57
           M+S+SN+LSFKHGLSLWCP S S+++I      S+K F+RR F V  SSFANENREFVIV
Sbjct: 1   MSSISNALSFKHGLSLWCPHSTSVNQISQPCSVSSKIFRRR-FSVLASSFANENREFVIV 59

Query: 58  GGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTC 117
           GGGNA+GYAARTFVEHGMADG+LCIVSKEAY PYERPALTK YLFPLDKKPARLPGFHTC
Sbjct: 60  GGGNASGYAARTFVEHGMADGKLCIVSKEAYVPYERPALTKAYLFPLDKKPARLPGFHTC 119

Query: 118 VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRF 177
           VG+GGERQTP+WYKEKGIEM+++DPV  ID EKQTL TNSGKLLKYGSLI+ATGCTASRF
Sbjct: 120 VGAGGERQTPDWYKEKGIEMLHEDPVADIDTEKQTLTTNSGKLLKYGSLIIATGCTASRF 179

Query: 178 PEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIF 237
           P+KIGG LPGVHY+RDVADA++LISSLEK+KKVVVVGGGYIGMEVAAA V WKLDTTIIF
Sbjct: 180 PDKIGGNLPGVHYVRDVADANSLISSLEKSKKVVVVGGGYIGMEVAAATVAWKLDTTIIF 239

Query: 238 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 297
           PE+HL+ RLFTPSLAQ+YE LY+  GV FVKGASIK+LEAGSDGRV+ VKLE+GS I+AD
Sbjct: 240 PEDHLMTRLFTPSLAQKYEDLYKDYGVNFVKGASIKSLEAGSDGRVSGVKLENGSIIEAD 299

Query: 298 TIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARV 357
           T+VIGIG KP V PFE VGLN +VGGIQVDG FRT +PGIFAIGDVAAFPLK+YDR  RV
Sbjct: 300 TVVIGIGGKPAVGPFESVGLNKTVGGIQVDGLFRTSIPGIFAIGDVAAFPLKIYDRITRV 359

Query: 358 EHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEI 417
           EHVDHAR+SAQHC+K+LL+A T TYDYLP FYSRVFE+EGSPRKVWWQFFGDNVGET+E+
Sbjct: 360 EHVDHARRSAQHCVKSLLTAHTDTYDYLPLFYSRVFEHEGSPRKVWWQFFGDNVGETVEV 419

Query: 418 GNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEI 477
           GNFDPKIATFWIDSGKLKGVL+ESGSPEEFQLLP LARSQP VD AKLQ+ASSV+EALEI
Sbjct: 420 GNFDPKIATFWIDSGKLKGVLLESGSPEEFQLLPKLARSQPSVDVAKLQKASSVDEALEI 479

Query: 478 ARAA 481
           A+A+
Sbjct: 480 AQAS 483

Source: Picrorhiza kurrooa

Species: Picrorhiza kurrooa

Genus: Picrorhiza

Family: Plantaginaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537579|ref|XP_002509856.1| monodehydroascorbate reductase, putative [Ricinus communis] gi|223549755|gb|EEF51243.1| monodehydroascorbate reductase, putative [Ricinus communis]

 Score =  815 bits (2106), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/484 (84%), Positives = 448/484 (92%), Gaps = 4/484 (0%)

Query: 1   MASVSNSLSFKHGLSLWCPQSPSLHRIRHSS--AKNFQRRGFVVAYSSFANENREFVIVG 58
           MA++SNSL  KHGLSLWCP S SL+R  H+   A     R +VV  S+F+NENREFVIVG
Sbjct: 8   MATISNSLPLKHGLSLWCPHSSSLNRTFHTPPIAYRIVHRNYVV--SAFSNENREFVIVG 65

Query: 59  GGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCV 118
           GGNAAGYAARTFVEHGMADGRLCIV+KE +APYERPALTK YLFPLDKKPARLPGFHTCV
Sbjct: 66  GGNAAGYAARTFVEHGMADGRLCIVTKEPHAPYERPALTKAYLFPLDKKPARLPGFHTCV 125

Query: 119 GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP 178
           GSGGERQTP+WY+EKGIEM+Y+DPVTSIDIEKQTL TNSGKLLKYG+LI+ATG TASRFP
Sbjct: 126 GSGGERQTPDWYQEKGIEMLYEDPVTSIDIEKQTLGTNSGKLLKYGTLIIATGSTASRFP 185

Query: 179 EKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFP 238
           EKIGG LPGVHYIRDVADAD+LISSL+KA+KVVVVGGGYIGMEVAAAAVGW LDTTIIFP
Sbjct: 186 EKIGGSLPGVHYIRDVADADSLISSLDKARKVVVVGGGYIGMEVAAAAVGWNLDTTIIFP 245

Query: 239 ENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADT 298
           E HLLQRLFTPSLAQRYE+LY++NGVKF+KGASIKNLEAGSDG VA VKLEDGS I+ADT
Sbjct: 246 EKHLLQRLFTPSLAQRYEELYKENGVKFLKGASIKNLEAGSDGHVATVKLEDGSIIEADT 305

Query: 299 IVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVE 358
           +VIGIGAKP VSPFE+VGLN++VGGIQVDGQFRT  PGIFAIGDVAAFPLKMY+RTARVE
Sbjct: 306 VVIGIGAKPAVSPFEQVGLNATVGGIQVDGQFRTNKPGIFAIGDVAAFPLKMYNRTARVE 365

Query: 359 HVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIG 418
           HVDHAR+SA+HC+KALLSAQT TYDYLPYFYSRVFEYEGSPRK+WWQFFGDNVGE +EIG
Sbjct: 366 HVDHARRSARHCVKALLSAQTSTYDYLPYFYSRVFEYEGSPRKIWWQFFGDNVGEAVEIG 425

Query: 419 NFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIA 478
           NFDPKIATFWIDSGKLKG+L+ESGS EEFQLLP LARSQP VDK+KL +ASSVEEALEIA
Sbjct: 426 NFDPKIATFWIDSGKLKGILLESGSAEEFQLLPKLARSQPSVDKSKLLKASSVEEALEIA 485

Query: 479 RAAL 482
           +A+L
Sbjct: 486 QASL 489

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350536875|ref|NP_001234013.1| monodehydroascorbate reductase [Solanum lycopersicum] gi|195542238|gb|AAZ66138.2| monodehydroascorbate reductase [Solanum lycopersicum] gi|299507810|gb|ADJ21816.1| monodehydroascorbate reductase [Solanum lycopersicum var. cerasiforme]

 Score =  810 bits (2092), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/482 (81%), Positives = 436/482 (90%)

Query: 1   MASVSNSLSFKHGLSLWCPQSPSLHRIRHSSAKNFQRRGFVVAYSSFANENREFVIVGGG 60
           MA+  N++S K GLSLWCPQS  L+RI   S  +   R   VA SSF NENRE+V+VGGG
Sbjct: 1   MATTPNTMSIKQGLSLWCPQSAVLNRISRVSVPSRSFRRSFVAASSFDNENREYVVVGGG 60

Query: 61  NAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGS 120
           NAAGYAARTFVEHG A+G+LCIV+KE YAPYERPALTK YLFPLDKKPARLPGFHTCVG+
Sbjct: 61  NAAGYAARTFVEHGQANGKLCIVTKEPYAPYERPALTKAYLFPLDKKPARLPGFHTCVGA 120

Query: 121 GGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEK 180
           GGERQTP+WYKE+GIEM+Y+DPVT IDIEKQTL TNSGKLLKYG+LI+ATGCTASRFPEK
Sbjct: 121 GGERQTPDWYKEQGIEMLYEDPVTGIDIEKQTLTTNSGKLLKYGTLIIATGCTASRFPEK 180

Query: 181 IGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240
           IGG LPGVHYIRDVADAD+LISSL KAKK+VVVGGGYIGMEVAAAAV WKLDTTIIFPE 
Sbjct: 181 IGGNLPGVHYIRDVADADSLISSLGKAKKLVVVGGGYIGMEVAAAAVAWKLDTTIIFPEE 240

Query: 241 HLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV 300
           HLL RLFTPSLAQ+YEQLYQ +GVKFVKGA IK+LE+G D RV AVKLEDGS+I+ DT+V
Sbjct: 241 HLLSRLFTPSLAQKYEQLYQDSGVKFVKGAKIKHLESGPDSRVTAVKLEDGSSIETDTVV 300

Query: 301 IGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHV 360
           IGIGAKP VSPF+ VGLN++VGGI+VDGQFRT +PGIFAIGDVAAFPLK+Y+R ARVEHV
Sbjct: 301 IGIGAKPAVSPFDMVGLNNTVGGIEVDGQFRTNIPGIFAIGDVAAFPLKIYNRIARVEHV 360

Query: 361 DHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNF 420
           DHAR+SAQHCIK+LL+A THTYDYLPYFYSRVFEYEGS RKVWWQFFGDNVGE +E+GNF
Sbjct: 361 DHARKSAQHCIKSLLTAHTHTYDYLPYFYSRVFEYEGSSRKVWWQFFGDNVGEAVEVGNF 420

Query: 421 DPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIARA 480
           DPK+ATFWIDSGKLKGVL+ESGSPEEFQLLP LARSQP VD AKLQ ASSVEEALEIA+A
Sbjct: 421 DPKVATFWIDSGKLKGVLLESGSPEEFQLLPKLARSQPSVDIAKLQNASSVEEALEIAQA 480

Query: 481 AL 482
           +L
Sbjct: 481 SL 482

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110265126|gb|ABG57052.1| chloroplast monodehydroascorbate reductase [Solanum lycopersicum]

 Score =  808 bits (2087), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/482 (81%), Positives = 436/482 (90%)

Query: 1   MASVSNSLSFKHGLSLWCPQSPSLHRIRHSSAKNFQRRGFVVAYSSFANENREFVIVGGG 60
           MA+  N++S K GLSLWCPQS  L+RI   S  +   R   VA SSF NENRE+V+VGGG
Sbjct: 1   MATTPNTMSIKQGLSLWCPQSAVLNRISRVSVPSRSFRRSFVAASSFDNENREYVVVGGG 60

Query: 61  NAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGS 120
           NAAGYAARTFVEHG A+G+LCIV+KE YAPYERPALTK YLFPLDKKPARLPGFHTCVG+
Sbjct: 61  NAAGYAARTFVEHGQANGKLCIVTKEPYAPYERPALTKAYLFPLDKKPARLPGFHTCVGA 120

Query: 121 GGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEK 180
           GGERQTP+WYKE+GIEM+Y+DPVT IDIEKQTL TNSGKLLKYG+LI+ATGCTASRFPEK
Sbjct: 121 GGERQTPDWYKEQGIEMLYEDPVTGIDIEKQTLTTNSGKLLKYGTLIIATGCTASRFPEK 180

Query: 181 IGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240
           IGG LPGVHYIRDVADAD+LISSL KAKK+VVVGGGYIGMEVAAAAV WKLDTTIIFPE 
Sbjct: 181 IGGNLPGVHYIRDVADADSLISSLGKAKKLVVVGGGYIGMEVAAAAVAWKLDTTIIFPEE 240

Query: 241 HLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV 300
           HLL RLFTPSLAQ+YEQLYQ +GVKFVKGA IK+LE+G D RV AVKLEDGS+I+ DT+V
Sbjct: 241 HLLSRLFTPSLAQKYEQLYQDSGVKFVKGAKIKHLESGPDSRVTAVKLEDGSSIETDTVV 300

Query: 301 IGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHV 360
           IGIGAKP VSPF+ VGLN++VGGI+VDGQFRT +PGIFAIGDVAAFPLK+Y+R ARVEHV
Sbjct: 301 IGIGAKPAVSPFDMVGLNNTVGGIEVDGQFRTNIPGIFAIGDVAAFPLKIYNRIARVEHV 360

Query: 361 DHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNF 420
           DHAR+SAQHCIK+LL+A THT+DYLPYFYSRVFEYEGS RKVWWQFFGDNVGE +E+GNF
Sbjct: 361 DHARKSAQHCIKSLLTAHTHTHDYLPYFYSRVFEYEGSSRKVWWQFFGDNVGEAVEVGNF 420

Query: 421 DPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIARA 480
           DPK+ATFWIDSGKLKGVL+ESGSPEEFQLLP LARSQP VD AKLQ ASSVEEALEIA+A
Sbjct: 421 DPKVATFWIDSGKLKGVLLESGSPEEFQLLPKLARSQPSVDIAKLQNASSVEEALEIAQA 480

Query: 481 AL 482
           +L
Sbjct: 481 SL 482

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|46093473|dbj|BAD14933.1| monodehydroascorbate reductase [Brassica oleracea]

 Score =  792 bits (2045), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/486 (80%), Positives = 428/486 (88%), Gaps = 6/486 (1%)

Query: 1   MASVSNSLSFKHGLSLWCPQSPSLHR---IRHSS-AKNFQRRGFVVAYSSFANENREFVI 56
           MA  S +L  K GLSLWCP SPSL R    R S        RG V A  SFANENREFVI
Sbjct: 1   MALASTTLPAKTGLSLWCPTSPSLARRLPARFSPIGSRIASRGVVTA--SFANENREFVI 58

Query: 57  VGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT 116
           +GGGNAAGYAARTFVE+GMADGRLCIV+KEAYAPYERPALTK YLFP +KKPARLPGFHT
Sbjct: 59  IGGGNAAGYAARTFVENGMADGRLCIVTKEAYAPYERPALTKAYLFPPEKKPARLPGFHT 118

Query: 117 CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASR 176
           CVG GGERQTP+WYKEKGIEMIY+DPVT  D EKQTL TN+GK LKYGSLI+ATGCTASR
Sbjct: 119 CVGGGGERQTPDWYKEKGIEMIYEDPVTGADFEKQTLTTNTGKQLKYGSLIIATGCTASR 178

Query: 177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTII 236
           FP+KIGG LPGVHYIR+VADAD+LISSL K+KKVV+VGGGYIGMEVAAAAV W LDTTI+
Sbjct: 179 FPDKIGGNLPGVHYIREVADADSLISSLGKSKKVVIVGGGYIGMEVAAAAVAWNLDTTIV 238

Query: 237 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 296
           FPE+ LLQRLFTPSLAQRYE+LY+QNGVKFVKGASI NLEAGSDGRV AVKL DGSTI+A
Sbjct: 239 FPEDQLLQRLFTPSLAQRYEELYRQNGVKFVKGASINNLEAGSDGRVTAVKLADGSTIEA 298

Query: 297 DTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTAR 356
           DT+VIGIGAKP + PFE + +N S+GGIQVDG FRT  PGIFAIGDVAAFPLK+YDR  R
Sbjct: 299 DTVVIGIGAKPAIGPFETLSMNKSIGGIQVDGLFRTSTPGIFAIGDVAAFPLKIYDRMTR 358

Query: 357 VEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIE 416
           VEHVDHAR+SAQHC+K+LL+A T TYDYLPYFYSRVFEYEGS RKVWWQF+GDNVGET+E
Sbjct: 359 VEHVDHARRSAQHCVKSLLTAHTDTYDYLPYFYSRVFEYEGSSRKVWWQFYGDNVGETVE 418

Query: 417 IGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALE 476
           +GNFDPKIATFWIDSG+LKGVLVESGSPEEFQLLP LARSQP VDKAKL  ASSVEEA+E
Sbjct: 419 VGNFDPKIATFWIDSGRLKGVLVESGSPEEFQLLPKLARSQPIVDKAKLASASSVEEAIE 478

Query: 477 IARAAL 482
           IA+AAL
Sbjct: 479 IAQAAL 484

Source: Brassica oleracea

Species: Brassica oleracea

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30696924|ref|NP_849839.1| Monodehydroascorbate reductase [Arabidopsis thaliana] gi|50400853|sp|P92947.3|MDARP_ARATH RecName: Full=Monodehydroascorbate reductase, chloroplastic; Short=MDAR; Flags: Precursor gi|12325013|gb|AAG52455.1|AC010852_12 putative monodehydroascorbate reductase; 10617-7178 [Arabidopsis thaliana] gi|23397057|gb|AAN31814.1| putative monodehydroascorbate reductase [Arabidopsis thaliana] gi|332196050|gb|AEE34171.1| Monodehydroascorbate reductase [Arabidopsis thaliana]

 Score =  789 bits (2038), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/486 (80%), Positives = 429/486 (88%), Gaps = 6/486 (1%)

Query: 1   MASVSNSLSFKHGLSLWCPQSPSLHR---IRHSS-AKNFQRRGFVVAYSSFANENREFVI 56
           MA  S +L  K GLSLWCP SPSL R    R S        R  V A  SFANENREFVI
Sbjct: 8   MALASTTLPTKSGLSLWCPSSPSLARRFPARFSPIGSRIASRSLVTA--SFANENREFVI 65

Query: 57  VGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT 116
           VGGGNAAGYAARTFVE+GMADGRLCIV+KEAYAPYERPALTK YLFP +KKPARLPGFHT
Sbjct: 66  VGGGNAAGYAARTFVENGMADGRLCIVTKEAYAPYERPALTKAYLFPPEKKPARLPGFHT 125

Query: 117 CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASR 176
           CVG GGERQTP+WYKEKGIE+IY+DPV   D EKQTL T++GK LKYGSLI+ATGCTASR
Sbjct: 126 CVGGGGERQTPDWYKEKGIEVIYEDPVAGADFEKQTLTTDAGKQLKYGSLIIATGCTASR 185

Query: 177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTII 236
           FP+KIGG+LPGVHYIR+VADAD+LI+SL KAKK+V+VGGGYIGMEVAAAAV W LDTTI+
Sbjct: 186 FPDKIGGHLPGVHYIREVADADSLIASLGKAKKIVIVGGGYIGMEVAAAAVAWNLDTTIV 245

Query: 237 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 296
           FPE+ LLQRLFTPSLAQ+YE+LY+QNGVKFVKGASI NLEAGSDGRV+AVKL DGSTI+A
Sbjct: 246 FPEDQLLQRLFTPSLAQKYEELYRQNGVKFVKGASINNLEAGSDGRVSAVKLADGSTIEA 305

Query: 297 DTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTAR 356
           DT+VIGIGAKP + PFE + +N S+GGIQVDG FRT  PGIFAIGDVAAFPLK+YDR  R
Sbjct: 306 DTVVIGIGAKPAIGPFETLAMNKSIGGIQVDGLFRTSTPGIFAIGDVAAFPLKIYDRMTR 365

Query: 357 VEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIE 416
           VEHVDHAR+SAQHC+K+LL+A T TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGET+E
Sbjct: 366 VEHVDHARRSAQHCVKSLLTAHTDTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETVE 425

Query: 417 IGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALE 476
           +GNFDPKIATFWI+SG+LKGVLVESGSPEEFQLLP LARSQP VDKAKL  ASSVEEALE
Sbjct: 426 VGNFDPKIATFWIESGRLKGVLVESGSPEEFQLLPKLARSQPLVDKAKLASASSVEEALE 485

Query: 477 IARAAL 482
           IA+AAL
Sbjct: 486 IAQAAL 491

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	488
TAIR|locus:2195503	493	MDAR6 "monodehydroascorbate re	0.983	0.973	0.792	1.5e-207
TAIR|locus:2144588	435	ATMDAR2 [Arabidopsis thaliana	0.850	0.954	0.424	5.7e-91
TAIR|locus:2086430	488	MDAR4 "monodehydroascorbate re	0.813	0.813	0.429	6.5e-90
TAIR|locus:2085176	466	MDAR1 "monodehydroascorbate re	0.788	0.826	0.426	2e-86
TAIR|locus:2100143	441	MDHAR "monodehydroascorbate re	0.842	0.931	0.405	6.2e-85
UNIPROTKB|P95146	411	Rv1869c "Probable reductase" [	0.778	0.924	0.298	1.7e-36
TIGR_CMR|SPO_3737	403	SPO_3737 "pyridine nucleotide-	0.782	0.947	0.289	4.4e-36
UNIPROTKB|D5IGG6	414	fdr "Ferredoxin--NAD(P)(+) red	0.665	0.785	0.305	8.5e-33
UNIPROTKB|P95034	406	Rv0688 "PUTATIVE FERREDOXIN RE	0.653	0.785	0.311	1.8e-32
UNIPROTKB|Q9L4M8	385	alkT "Rubredoxin-NAD(+) reduct	0.631	0.8	0.309	4.9e-30

TAIR|locus:2195503 MDAR6 "monodehydroascorbate reductase 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 2007 (711.6 bits), Expect = 1.5e-207, P = 1.5e-207
 Identities = 385/486 (79%), Positives = 422/486 (86%)

Query:     1 MASVSNSLSFKHGLSLWCPQSPSLHR---IRHSS-AKNFQRRGFVVAYSSFANENREFVI 56
             MA  S +L  K GLSLWCP SPSL R    R S        R  V A  SFANENREFVI
Sbjct:     8 MALASTTLPTKSGLSLWCPSSPSLARRFPARFSPIGSRIASRSLVTA--SFANENREFVI 65

Query:    57 VGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT 116
             VGGGNAAGYAARTFVE+GMADGRLCIV+KEAYAPYERPALTK YLFP +KKPARLPGFHT
Sbjct:    66 VGGGNAAGYAARTFVENGMADGRLCIVTKEAYAPYERPALTKAYLFPPEKKPARLPGFHT 125

Query:   117 CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASR 176
             CVG GGERQTP+WYKEKGIE+IY+DPV   D EKQTL T++GK LKYGSLI+ATGCTASR
Sbjct:   126 CVGGGGERQTPDWYKEKGIEVIYEDPVAGADFEKQTLTTDAGKQLKYGSLIIATGCTASR 185

Query:   177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 236
             FP+KIGG+LPGVHYIR+VADAD+LI+SL KAKK       YIGMEVAAAAV W LDTTI+
Sbjct:   186 FPDKIGGHLPGVHYIREVADADSLIASLGKAKKIVIVGGGYIGMEVAAAAVAWNLDTTIV 245

Query:   237 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 296
             FPE+ LLQRLFTPSLAQ+YE+LY+QNGVKFVKGASI NLEAGSDGRV+AVKL DGSTI+A
Sbjct:   246 FPEDQLLQRLFTPSLAQKYEELYRQNGVKFVKGASINNLEAGSDGRVSAVKLADGSTIEA 305

Query:   297 DTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTAR 356
             DT+VIGIGAKP + PFE + +N S+GGIQVDG FRT  PGIFAIGDVAAFPLK+YDR  R
Sbjct:   306 DTVVIGIGAKPAIGPFETLAMNKSIGGIQVDGLFRTSTPGIFAIGDVAAFPLKIYDRMTR 365

Query:   357 VEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIE 416
             VEHVDHAR+SAQHC+K+LL+A T TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGET+E
Sbjct:   366 VEHVDHARRSAQHCVKSLLTAHTDTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETVE 425

Query:   417 IGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALE 476
             +GNFDPKIATFWI+SG+LKGVLVESGSPEEFQLLP LARSQP VDKAKL  ASSVEEALE
Sbjct:   426 VGNFDPKIATFWIESGRLKGVLVESGSPEEFQLLPKLARSQPLVDKAKLASASSVEEALE 485

Query:   477 IARAAL 482
             IA+AAL
Sbjct:   486 IAQAAL 491

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0010319 "stromule" evidence=IDA

GO:0005524 "ATP binding" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

TAIR|locus:2144588 ATMDAR2 [Arabidopsis thaliana (taxid:3702)]

 Score = 907 (324.3 bits), Expect = 5.7e-91, P = 5.7e-91
 Identities = 186/438 (42%), Positives = 265/438 (60%)

Query:    53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLP 112
             ++VIVGGG AAGYAAR F   G+  G L I+S+E   PYERPAL+KGY+  L+ K A LP
Sbjct:     8 KYVIVGGGVAAGYAAREFFNQGVKPGELAIISREQVPPYERPALSKGYIH-LENK-ATLP 65

Query:   113 GFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGC 172
              F+   G GGERQ P+WYKEKGIE+I    +   D+  +TL++ +G++ KY +L+ ATG 
Sbjct:    66 NFYVAAGIGGERQFPQWYKEKGIELILGTEIVKADLAAKTLVSGTGQVFKYQTLLAATGS 125

Query:   173 TASRFPE--KIGGYLPGVHYIRDVADADALISSLE-KAK-KXXXXXXXYIGMEVAAAAVG 228
             +  R  +    G     + Y+R++ DAD L  ++E K K K       YIG+E+ AA   
Sbjct:   126 SVIRLSDFGVPGADAKNIFYLRELEDADYLAYAMETKEKGKAVVVGGGYIGLELGAALKA 185

Query:   229 WKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL 288
               LD T+++PE   + RLFT  +A  YE  Y   G+  VKG         S+G V  VKL
Sbjct:   186 NNLDVTMVYPEPWCMPRLFTAGIASFYEGYYANKGINIVKGTVASGFTTNSNGEVTEVKL 245

Query:   289 EDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPL 348
             +DG T++AD +++G+G +P +S F+   +    GG++ DG F+T +P ++AIGDVA FP+
Sbjct:   246 KDGRTLEADIVIVGVGGRPIISLFKDQ-VEEEKGGLKTDGFFKTSLPDVYAIGDVATFPM 304

Query:   349 KMYDRTARVEHVDHARQSAQHCIKALLSAQTHT----YDYLPYFYSRVFEYEGSPRKVWW 404
             K+Y+   RVEHVDHAR+SA+  +KA+ +A+       YDYLPYFYSR F+         W
Sbjct:   305 KLYNEMRRVEHVDHARKSAEQAVKAIKAAEEGNSIPEYDYLPYFYSRAFDLS-------W 357

Query:   405 QFFGDNVGETIEIGNFDP-----KIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPF 459
             QF+GDNVGE++  G+ DP     K  ++WI   K+ G  +E GSPEE   +  LAR+QP 
Sbjct:   358 QFYGDNVGESVLFGDNDPESPKPKFGSYWIKERKVVGAFLEGGSPEENNAIAKLARAQPS 417

Query:   460 VDKAKLQQASSVEEALEI 477
             V+  ++     +  A  I
Sbjct:   418 VESLEVLSKEGLSFATNI 435

GO:0005737 "cytoplasm" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0016656 "monodehydroascorbate reductase (NADH) activity" evidence=ISS

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP

GO:0010043 "response to zinc ion" evidence=IEP

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0006970 "response to osmotic stress" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

TAIR|locus:2086430 MDAR4 "monodehydroascorbate reductase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 897 (320.8 bits), Expect = 6.5e-90, P = 6.5e-90
 Identities = 178/414 (42%), Positives = 263/414 (63%)

Query:    54 FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPG 113
             +VI+GGG AAGYAA  F   G++DG LCI+S+E  APYERPAL+KG+L P  + PARLP 
Sbjct:     7 YVILGGGVAAGYAALEFTRRGVSDGELCIISEEPVAPYERPALSKGFLLP--EAPARLPS 64

Query:   114 FHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCT 173
             FHTCVG+  E+ TP+WYK+ GIE++    V S+D+ ++TL++++G+ + Y  LI+ATG  
Sbjct:    65 FHTCVGANDEKLTPKWYKDHGIELVLGTRVKSVDVRRKTLLSSTGETISYKFLIIATGAR 124

Query:   174 ASRFPE--KIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXX--YIGMEVAAAAVGW 229
             A +  E    G     V Y+RD+ADA+ L + ++ +           YIGME AA+ V  
Sbjct:   125 ALKLEEFGVEGSDAENVCYLRDLADANRLATVIQSSSNGNAVVIGGGYIGMECAASLVIN 184

Query:   230 KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE 289
             K++ T++FPE H + RLFTP +A  YE  Y+  GVKF+KG  + + E  S+ +V AV L+
Sbjct:   185 KINVTMVFPEAHCMARLFTPKIASLYEDYYRAKGVKFIKGTVLTSFEFDSNKKVTAVNLK 244

Query:   290 DGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 349
             DGS + AD +V+GIG +P  S FE   L    GGI+V+ + ++    ++AIGDVA FP+K
Sbjct:   245 DGSHLPADLVVVGIGIRPNTSLFEGQ-LTIEKGGIKVNSRMQSSDSSVYAIGDVATFPVK 303

Query:   350 MYDRTARVEHVDHARQSAQHCIKALLSA-QTHTYDYLPYFYSRVFEYEGSPRKVWWQFFG 408
             ++    R+EHVD AR+SA+H + A++   +T  +DYLP+FYSRVF +        WQF+G
Sbjct:   304 LFGEMRRLEHVDSARKSARHAVSAIMDPIKTGDFDYLPFFYSRVFAFS-------WQFYG 356

Query:   409 DNVGETIEIGNF-DPK-IATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFV 460
             D  G+ +  G + D K    +W+  G L G  +E G+ EE++ +    + +P V
Sbjct:   357 DPTGDVVHFGEYEDGKSFGAYWVKKGHLVGSFLEGGTKEEYETISKATQLKPAV 410

GO:0005737 "cytoplasm" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005778 "peroxisomal membrane" evidence=IDA

GO:0016656 "monodehydroascorbate reductase (NADH) activity" evidence=IMP;IDA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA;IMP;TAS

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2085176 MDAR1 "monodehydroascorbate reductase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 864 (309.2 bits), Expect = 2.0e-86, P = 2.0e-86
 Identities = 174/408 (42%), Positives = 251/408 (61%)

Query:    64 GYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGE 123
             GYAA+ F   G+  G L ++SKEA APYERPAL+KGYLFP  +  ARLPGFH CVGSGGE
Sbjct:    50 GYAAKEFANQGVQPGELAVISKEAVAPYERPALSKGYLFP--EGAARLPGFHCCVGSGGE 107

Query:   124 RQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPE--KI 181
             +  PE YK+KGIE+I    +   D+  ++L++ +G + KY +LI+ATG T  R  +    
Sbjct:   108 KLLPESYKQKGIELILSTEIVKADLSAKSLVSATGDVFKYQTLIIATGSTVLRLTDFGVK 167

Query:   182 GGYLPGVHYIRDVADADALISSLEKAK--KXXXXXXXYIGMEVAAAAVGWKLDTTIIFPE 239
             G     + Y+R++ DAD L+ +++  K  K       YIG+E++A      LD T++FPE
Sbjct:   168 GADSKNILYLREIDDADKLVEAIKAKKGGKAVVVGGGYIGLELSAVLRINNLDVTMVFPE 227

Query:   240 NHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTI 299
                + RLFT  +A  YE  Y   GVK +KG       A  +G V  V+L+DG T++AD +
Sbjct:   228 PWCMPRLFTADIAAFYETYYTNKGVKIIKGTVASGFTAQPNGEVKEVQLKDGRTLEADIV 287

Query:   300 VIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEH 359
             ++G+GAKP  S F+   +    GGI+ D  F+T +P ++A+GDVA FPLKMY    RVEH
Sbjct:   288 IVGVGAKPLTSLFKGQ-VEEDKGGIKTDAFFKTSVPDVYAVGDVATFPLKMYGDVRRVEH 346

Query:   360 VDHARQSAQHCIKALLSAQ----THTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETI 415
             VDH+R+SA+  +KA+ +A+       YDYLP+FYSR F+         WQF+GDNVG+++
Sbjct:   347 VDHSRKSAEQAVKAIKAAEGGAAVEEYDYLPFFYSRSFDLS-------WQFYGDNVGDSV 399

Query:   416 EIG-----NFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQP 458
               G     N  P+   +W+  GK+ G  +E GS +E + L  +A+++P
Sbjct:   400 LFGDSNPSNPKPRFGAYWVQGGKVVGAFMEGGSGDENKALAKVAKARP 447

GO:0005737 "cytoplasm" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005782 "peroxisomal matrix" evidence=IDA

GO:0016656 "monodehydroascorbate reductase (NADH) activity" evidence=IDA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA;TAS

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

TAIR|locus:2100143 MDHAR "monodehydroascorbate reductase" [Arabidopsis thaliana (taxid:3702)]

 Score = 850 (304.3 bits), Expect = 6.2e-85, P = 6.2e-85
 Identities = 179/441 (40%), Positives = 261/441 (59%)

Query:    53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLP 112
             ++VI+GGG A GYAAR F   G+  G L I+SKE   P+ERP LTK Y+  L+  P  L 
Sbjct:     8 KYVIIGGGVAGGYAAREFSNQGLKPGELAIISKEPVPPFERPELTKVYI-DLEVNPT-LA 65

Query:   113 GFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGC 172
               + C G+G  +Q P WYKEKGI++I    +   D+  +TL+++ GK+ KY +L++ATG 
Sbjct:    66 NIYVCAGTGEAKQYPNWYKEKGIDLIVGTEIVKADLASKTLVSDDGKIYKYQTLLIATGS 125

Query:   173 TASRFPEKIG---GYLPGVHYIRDVADADALISSLE---KAKKXXXXXXXYIGMEVAAAA 226
             T  R  E IG     +  + Y+R++ D+D L  ++E   +  K       ++G+E+++A 
Sbjct:   126 TNIRLSE-IGVQEADVKNIFYLREIEDSDELALAMELYVQRGKAVIIGGGFLGLEISSAL 184

Query:   227 VGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV 286
                  + T++FPE  L+ R FT  +A  YE  Y   G+K +KG         SDG V  V
Sbjct:   185 RANNHEVTMVFPEPWLVHRFFTAEIASFYESYYANKGIKIIKGTVATGFSTNSDGEVTEV 244

Query:   287 KLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAF 346
             KLEDG T++A+ +V G+GA+P  S F+   L    GGI+ DG F+T +P ++A+GDVA F
Sbjct:   245 KLEDGRTLEANIVVAGVGARPATSLFKGQ-LEEEKGGIKTDGFFKTSVPDVYALGDVATF 303

Query:   347 PLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT----YDYLPYFYSRVFEYEGSPRKV 402
             P+KMY  T RVEH D+AR+SA   +KA+ + +       YDYLPYFYSR F       K+
Sbjct:   304 PMKMYGGTRRVEHADNARKSAAQAVKAIKAGEEGKTIPDYDYLPYFYSRFF-------KL 356

Query:   403 WWQFFGDNVGETIEIGNFDPK-----IATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQ 457
              W+F+G+NVGE++  G+ DPK       T+W+  GK+ GV +E G+ EE + +  +AR+Q
Sbjct:   357 SWEFYGENVGESVLFGDNDPKSPKPKFGTYWVKDGKVVGVFLEGGTQEEHKAIAKVARAQ 416

Query:   458 PFVDKAKLQQASSVEEALEIA 478
             P V+   L   S  EE L  A
Sbjct:   417 PSVES--LDVLS--EEGLSFA 433

GO:0005737 "cytoplasm" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0016656 "monodehydroascorbate reductase (NADH) activity" evidence=ISS

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP;RCA

GO:0009610 "response to symbiotic fungus" evidence=IEP

GO:0043903 "regulation of symbiosis, encompassing mutualism through parasitism" evidence=IMP

GO:0007165 "signal transduction" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

UNIPROTKB|P95146 Rv1869c "Probable reductase" [Mycobacterium tuberculosis H37Rv (taxid:83332)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 122/409 (29%), Positives = 193/409 (47%)

Query:    54 FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPG 113
             FVIVGGG  AG  A   +      GR+ +   E + PY+RP L+K +L    KK   L  
Sbjct:     7 FVIVGGG-LAGAKAVEALRRSDFGGRIILFGDEEHLPYDRPPLSKEFL--AGKKS--LSD 61

Query:   114 FHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCT 173
             F          QT +WY++  +++     V+S+D    T+    G  ++Y  L++ATG +
Sbjct:    62 FTI--------QTSDWYRDHDVDVRLGVRVSSLDRSAHTVELPDGAAVRYDKLLLATG-S 112

Query:   174 ASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDT 233
             A R P   G    GVHY+R   DA AL S L +          +IG+EVAA+A    +D 
Sbjct:   113 APRRPPIPGSDAAGVHYLRSYNDAVALNSVLVQGSSLAVVGAGWIGLEVAASARQRGVDV 172

Query:   234 TIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST 293
             T++      L      ++ + +  L++  GV       ++ + A +DG+   +K+ DGST
Sbjct:   173 TVVETAIQPLLAALGEAVGKVFADLHRDQGVDLRLQTQLEEITA-ADGKATGLKMRDGST 231

Query:   294 IDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR 353
             + AD +++ +GAKP V   ++ GL    GG+ VD   RT  P I+A+GD+AA    +   
Sbjct:   232 VAADAVLVAVGAKPNVELAQQAGLAMGEGGVLVDASLRTSDPDIYAVGDIAAAEHPLLGT 291

Query:   354 TARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVF----EYEG-SPRKVWWQFFG 408
               R EH  +A +        +L  +   Y  LPY ++  +    EY G +P      F G
Sbjct:   292 RVRTEHWANALKQPAVAAAGMLG-RPGEYAELPYLFTDQYDLGMEYVGHAPSCDRVVFRG 350

Query:   409 DNVG-ETIEIG-NFDPKI-----ATFWIDSGKLKGVLVESGSPEEFQLL 450
             +  G E +    + D ++        W     +KG L+ SG+P +   L
Sbjct:   351 NVAGREFLSFWLDGDSRVLAGMNVNVWDVVDDVKG-LIRSGNPVDVDRL 398

GO:0005576 "extracellular region" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

TIGR_CMR|SPO_3737 SPO_3737 "pyridine nucleotide-disulphide oxidoreductase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 119/411 (28%), Positives = 188/411 (45%)

Query:    55 VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGF 114
             V++G G A         + G  +G + ++  E   PY+RP L+K YL   + +  RL  F
Sbjct:     5 VVIGAGQAGASLVARLRKDGF-EGEITLIGAEPVPPYQRPPLSKAYLLG-EMEKERL--F 60

Query:   115 HTCVGSGGERQTPE-WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCT 173
                         PE +Y E+ I +     V++ID   +T ++  G+++ Y  L + TG  
Sbjct:    61 ----------LRPESFYAEQNIALRLNARVSAIDPAAKT-VSLGGEVIPYDQLALTTGSE 109

Query:   174 ASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDT 233
               R P  IGG L GVH +RD+AD DA+  S+ +  +       YIG+E AA      +  
Sbjct:   110 PRRLPAAIGGDLAGVHVVRDLADIDAMAPSVTEGARALIVGGGYIGLEAAAVCAKRGVQV 169

Query:   234 TIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST 293
             T++   + +LQR+  P  +  +  L+  +GV   +G  +  L  G+ GRV    L DGS 
Sbjct:   170 TLVEMADRILQRVAAPETSAYFRALHTGHGVDIREGVGLTRL-IGAQGRVTGAVLTDGSE 228

Query:   294 IDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR 353
             +  D +V+G+G  P  +  E  GL     GI+ D Q RT  P I+A GD A+FP K    
Sbjct:   229 LPVDLVVVGVGIAPATALAEAAGLVLE-NGIRTDAQGRTSDPSIWAAGDCASFPYK--GG 285

Query:   354 TARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG- 412
               R+E V +A   A+   + +  A    Y   P+F+S   +Y+     V  Q  G N G 
Sbjct:   286 RIRLESVPNAIDQAETVAQNMQGAGKD-YVAQPWFWSD--QYD-----VKLQIAGLNTGY 337

Query:   413 ETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKA 463
             + +     + +  +FW  +G     +     P  + +   L  S    D A
Sbjct:   338 DRVVTRPGEGQTVSFWYYTGDQLVAVDAMNDPRAYMVGKRLIDSGKTADPA 388

GO:0008152 "metabolic process" evidence=ISS

GO:0015036 "disulfide oxidoreductase activity" evidence=ISS

UNIPROTKB|D5IGG6 fdr "Ferredoxin--NAD(P)(+) reductase fdr" [Sphingomonas sp. (taxid:28214)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 105/344 (30%), Positives = 160/344 (46%)

Query:    53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLP 112
             + VIVG G+     A    ++G A G + I+  E   PYERP L+K YL       A   
Sbjct:     7 DVVIVGAGHGGAQTAIALRQNGFA-GTIAIIGAEPDLPYERPPLSKEYL-------AAEK 58

Query:   113 GFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGC 172
             GF   +     R    W  ++ I M     V  +D  ++ +    G+ + YG L+   G 
Sbjct:    59 GFERIL----IRPASFW-NDRHIAMHLGCAVERVDPTQRLVFLADGRSMGYGDLVWCAGG 113

Query:   173 TASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLD 232
             +A R  +  G  L GVHY+R  AD DAL + L    K       YIG+E AA    +  +
Sbjct:   114 SARRL-DCTGHDLGGVHYVRTRADTDALAAELPGVSKVVIIGGGYIGLEAAAVMAKFGKN 172

Query:   233 TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS 292
              T+I   + +L R+    L++ +E+ ++  GV       +  L  G DGRV  V+L D  
Sbjct:   173 VTLIEALDRVLARVAGEPLSRFFEEKHRSRGVDVRLRTKVGCL-LGQDGRVTHVELNDAD 231

Query:   293 TIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAF--PLKM 350
              I AD +++GIG  P +SP    G  +S  G+ VD   RT +P ++A+GD AA       
Sbjct:   232 PIPADLVIVGIGIIPAISPLVVAGAKAS-NGLLVDASGRTSIPHVYALGDCAAHVNSFAP 290

Query:   351 YDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFE 394
              D   R+E V +A   A    + +       Y  +P+F+S  ++
Sbjct:   291 NDIPIRLESVQNANDQAVVVARTICGTAAQ-YHAVPWFWSSQYD 333

GO:0004324 "ferredoxin-NADP+ reductase activity" evidence=ISS

GO:0008860 "ferredoxin-NAD+ reductase activity" evidence=ISS

GO:0046232 "carbazole catabolic process" evidence=IDA

GO:0050661 "NADP binding" evidence=ISS

GO:0051287 "NAD binding" evidence=ISS

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=ISS

GO:0071949 "FAD binding" evidence=ISS

UNIPROTKB|P95034 Rv0688 "PUTATIVE FERREDOXIN REDUCTASE" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 106/340 (31%), Positives = 156/340 (45%)

Query:    55 VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGF 114
             VIVGGG AA   A      G + GRL IVS E + PY+RP L+K  L       A  P  
Sbjct:    19 VIVGGGLAAARTAEQLRRAGYS-GRLTIVSDEVHLPYDRPPLSKEVLRSEVDDVALKPR- 76

Query:   115 HTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTA 174
                          E+Y EK I +       S+D  +QT+    G +L Y  L++ATG   
Sbjct:    77 -------------EFYDEKDIALRLGSAAVSLDTGEQTVTLADGTVLGYDELVIATGLVP 123

Query:   175 SRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTT 234
              R P      L G+  +R   ++ AL      A+        +IG EVAA+  G  +D  
Sbjct:   124 RRIPSLPD--LDGIRVLRSFDESMALRKHASAARHAVVVGAGFIGCEVAASLRGLGVDVV 181

Query:   235 IIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTI 294
             ++ P+   L  +    + Q   +L++  GV    G ++   E    G V AV L DG+ +
Sbjct:   182 LVEPQPAPLASVLGEQIGQLVTRLHRDEGVDVRTGVTVA--EVRGKGHVDAVVLTDGTEL 239

Query:   295 DADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRT 354
              AD +V+GIG+ P     E  G+     G+  D   RT  P ++A+GDVA++   M    
Sbjct:   240 PADLVVVGIGSTPATEWLEGSGVEVD-NGVICDKAGRTSAPNVWALGDVASWRDPM-GHQ 297

Query:   355 ARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFE 394
             ARVEH  +    A+  + A+L     T   +PYF+S  ++
Sbjct:   298 ARVEHWSNVADQARVVVPAMLGTDVPTGVVVPYFWSDQYD 337

GO:0005515 "protein binding" evidence=IPI

GO:0006124 "ferredoxin metabolic process" evidence=IDA

GO:0008860 "ferredoxin-NAD+ reductase activity" evidence=IDA

GO:0009055 "electron carrier activity" evidence=IDA

GO:0045454 "cell redox homeostasis" evidence=IDA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IDA

GO:0051287 "NAD binding" evidence=IDA

UNIPROTKB|Q9L4M8 alkT "Rubredoxin-NAD(+) reductase" [Pseudomonas putida (taxid:303)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 101/326 (30%), Positives = 152/326 (46%)

Query:    55 VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGF 114
             VIVG G A   AA    ++G   G + ++S+E+  PY+RP L+K +L     + A +P  
Sbjct:     4 VIVGAGTAGVNAAFWLRQYGYKGG-IRLLSRESVTPYQRPPLSKAFLTSETAESA-IP-- 59

Query:   115 HTCVGSGGERQTPE-WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCT 173
                         PE +Y    I +     + SID+ ++ +    G+   Y  LI+ATG +
Sbjct:    60 ----------LKPESFYTNNNISISLNTQIVSIDVGRKVVAAKDGEEYAYEKLILATGAS 109

Query:   174 ASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDT 233
             A R   + G  L GV Y+R + DA  L   L ++          IG+EVA+AAVG     
Sbjct:   110 ARRLTCE-GSELSGVCYLRSMEDAKNLRRKLVESASVVVLGGGVIGLEVASAAVGIGRRV 168

Query:   234 TIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST 293
             T+I     ++ R+ TP+ A       +  GV F   A + +++ G +G V    LE G  
Sbjct:   169 TVIEAAPRVMARVVTPAAANLVRARLEAEGVGFKLNAKLTSIK-GRNGHVNQCVLESGEK 227

Query:   294 IDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR 353
             I AD I++GIGA P +       L  S  G+ VD Q RT    I+AIGD A      +  
Sbjct:   228 IQADLIIVGIGAIPELELATEAALEVS-NGVVVDDQMRTSDTSIYAIGDCALARNLFFGT 286

Query:   354 TARVEHVDHARQSAQHCIKALLSAQT 379
               R+E + +A   AQ    ++    T
Sbjct:   287 MVRLETIHNAVTQAQIVASSICGTST 312

GO:0015046 "rubredoxin-NADP reductase activity" evidence=ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P92947	MDARP_ARATH	1, ., 6, ., 5, ., 4	0.8024	0.9836	0.9736	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	1.6.5.4	0.979
3rd Layer	1.6.5	0.983

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	488
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	2e-60
COG0446	415	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent	1e-45
PRK09754	396	PRK09754, PRK09754, phenylpropionate dioxygenase f	1e-41
COG1251	793	COG1251, NirB, NAD(P)H-nitrite reductase [Energy p	1e-34
TIGR02374	785	TIGR02374, nitri_red_nirB, nitrite reductase [NAD(	7e-31
TIGR03385	427	TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase	6e-28
COG1252	405	COG1252, Ndh, NADH dehydrogenase, FAD-containing s	5e-24
COG1249	454	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas	6e-24
PRK09564	444	PRK09564, PRK09564, coenzyme A disulfide reductase	2e-23
TIGR01350	460	TIGR01350, lipoamide_DH, dihydrolipoamide dehydrog	5e-23
PRK04965	377	PRK04965, PRK04965, NADH:flavorubredoxin oxidoredu	2e-20
PRK06116	450	PRK06116, PRK06116, glutathione reductase; Validat	8e-19
COG0492	305	COG0492, TrxB, Thioredoxin reductase [Posttranslat	4e-17
PRK05976	472	PRK05976, PRK05976, dihydrolipoamide dehydrogenase	6e-17
PRK13512	438	PRK13512, PRK13512, coenzyme A disulfide reductase	8e-16
pfam00070	82	pfam00070, Pyr_redox, Pyridine nucleotide-disulphi	1e-15
PRK06416	462	PRK06416, PRK06416, dihydrolipoamide dehydrogenase	1e-15
PRK06370	463	PRK06370, PRK06370, mercuric reductase; Validated	1e-15
PRK14989	847	PRK14989, PRK14989, nitrite reductase subunit NirD	3e-15
TIGR01421	450	TIGR01421, gluta_reduc_1, glutathione-disulfide re	7e-15
TIGR02053	463	TIGR02053, MerA, mercuric reductase	1e-14
PRK07818	466	PRK07818, PRK07818, dihydrolipoamide dehydrogenase	2e-14
PTZ00058	561	PTZ00058, PTZ00058, glutathione reductase; Provisi	5e-14
PRK06292	460	PRK06292, PRK06292, dihydrolipoamide dehydrogenase	6e-13
PRK05249	461	PRK05249, PRK05249, soluble pyridine nucleotide tr	7e-13
PRK07251	438	PRK07251, PRK07251, pyridine nucleotide-disulfide	9e-13
TIGR01424	446	TIGR01424, gluta_reduc_2, glutathione-disulfide re	2e-12
PRK12771	564	PRK12771, PRK12771, putative glutamate synthase (N	4e-12
TIGR01423	486	TIGR01423, trypano_reduc, trypanothione-disulfide	9e-12
PRK06327	475	PRK06327, PRK06327, dihydrolipoamide dehydrogenase	1e-11
PRK11749	457	PRK11749, PRK11749, dihydropyrimidine dehydrogenas	1e-11
TIGR03169	364	TIGR03169, Nterm_to_SelD, pyridine nucleotide-disu	7e-11
TIGR01292	299	TIGR01292, TRX_reduct, thioredoxin-disulfide reduc	1e-10
PTZ00052	499	PTZ00052, PTZ00052, thioredoxin reductase; Provisi	3e-10
PRK12770	352	PRK12770, PRK12770, putative glutamate synthase su	4e-10
TIGR01438	484	TIGR01438, TGR, thioredoxin and glutathione reduct	6e-10
PRK07846	451	PRK07846, PRK07846, mycothione reductase; Reviewed	2e-09
TIGR01316	449	TIGR01316, gltA, glutamate synthase (NADPH), homot	4e-09
PRK06115	466	PRK06115, PRK06115, dihydrolipoamide dehydrogenase	7e-09
PRK06912	458	PRK06912, acoL, dihydrolipoamide dehydrogenase; Va	7e-09
TIGR03452	452	TIGR03452, mycothione_red, mycothione reductase	8e-09
PRK08010	441	PRK08010, PRK08010, pyridine nucleotide-disulfide	1e-08
TIGR03140	515	TIGR03140, AhpF, alkyl hydroperoxide reductase sub	3e-08
PLN02507	499	PLN02507, PLN02507, glutathione reductase	6e-08
PLN02546	558	PLN02546, PLN02546, glutathione reductase	1e-07
PTZ00318	424	PTZ00318, PTZ00318, NADH dehydrogenase-like protei	2e-07
PRK12810	471	PRK12810, gltD, glutamate synthase subunit beta; R	3e-07
PRK14694	468	PRK14694, PRK14694, putative mercuric reductase; P	4e-07
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	1e-06
PRK09853	1019	PRK09853, PRK09853, putative selenate reductase su	2e-06
PRK12814	652	PRK12814, PRK12814, putative NADPH-dependent gluta	3e-06
PRK07845	466	PRK07845, PRK07845, flavoprotein disulfide reducta	9e-06
PRK12778	752	PRK12778, PRK12778, putative bifunctional 2-polypr	1e-05
COG3634	520	COG3634, AhpF, Alkyl hydroperoxide reductase, larg	2e-05
PRK06467	471	PRK06467, PRK06467, dihydrolipoamide dehydrogenase	6e-05
pfam13738	202	pfam13738, Pyr_redox_3, Pyridine nucleotide-disulp	7e-05
COG0493	457	COG0493, GltD, NADPH-dependent glutamate synthase	1e-04
TIGR03315	1012	TIGR03315, Se_ygfK, putative selenate reductase, Y	2e-04
PRK12831	464	PRK12831, PRK12831, putative oxidoreductase; Provi	2e-04
COG1252	405	COG1252, Ndh, NADH dehydrogenase, FAD-containing s	3e-04
PRK14727	479	PRK14727, PRK14727, putative mercuric reductase; P	0.001
TIGR03140	515	TIGR03140, AhpF, alkyl hydroperoxide reductase sub	0.003
PRK00711	416	PRK00711, PRK00711, D-amino acid dehydrogenase sma	0.003
PRK15317	517	PRK15317, PRK15317, alkyl hydroperoxide reductase	0.003
PRK15317	517	PRK15317, PRK15317, alkyl hydroperoxide reductase	0.004

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score =  199 bits (508), Expect = 2e-60
 Identities = 95/298 (31%), Positives = 139/298 (46%), Gaps = 21/298 (7%)

Query: 55  VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGF 114
           VI+GGG  AG AA   +       ++ ++ +E    Y R  L K  L  L+         
Sbjct: 3   VIIGGG-PAGLAAAIRL--ARLGLKVALIEREGGTCYNRGCLPKKLL--LEVAEGLELA- 56

Query: 115 HTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNS---GKLLKYGSLIVATG 171
                  G     E YKE G+E++    V  ID  ++T++      G+ + Y  LI+ATG
Sbjct: 57  ------IGLALPEEVYKEFGVEVLLGTEVVDIDRGEKTVVLKDVETGREITYDKLIIATG 110

Query: 172 CTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKL 231
                    I G    V  +R V D+D ++  LE  K+VVVVGGGYIG+E+AAA      
Sbjct: 111 ARPRIPG--IPGV--EVATLRGVIDSDEILELLELPKRVVVVGGGYIGLELAAALAKLGK 166

Query: 232 DTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG 291
           + T++   + LL R      A   E+L +   +       +  +    DG+V  VKL DG
Sbjct: 167 EVTVVERRDRLLARADDEISAALLEKLEKL-LLGVTVLLVVVVVVKVGDGKVVEVKLGDG 225

Query: 292 STIDADTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPL 348
             +DAD +++ IG +P     E+ G+     G I VD   RT +PGI+A GDVA    
Sbjct: 226 EELDADVVLVAIGRRPNTELLEQAGVELDERGYIVVDEYLRTSVPGIYAAGDVAEGKP 283

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

 Score =  163 bits (415), Expect = 1e-45
 Identities = 94/348 (27%), Positives = 146/348 (41%), Gaps = 23/348 (6%)

Query: 54  FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPG 113
            VIVGGG A   AA T     +A     ++ +E    Y R  L+      +      L  
Sbjct: 1   IVIVGGGAAGLSAATTLRRLLLAAEIT-LIGREPKYSYYRCPLSLYVGGGI-ASLEDLRY 58

Query: 114 FHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCT 173
                        P + +  GI++     VTSID E + ++ + G++ +Y  L++ATG  
Sbjct: 59  P------------PRFNRATGIDVRTGTEVTSIDPENKVVLLDDGEI-EYDYLVLATGAR 105

Query: 174 ASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDT 233
               P        GV  +R   DA+AL    E  K VVVVG G IG+E A AA       
Sbjct: 106 PRPPP---ISDWEGVVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKV 162

Query: 234 TIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA-VKLEDGS 292
           T+I   + L  +L  P +A+   +L ++ GV+ + G  +  +E   +  V   V   DG 
Sbjct: 163 TLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGE 222

Query: 293 TIDADTIVIGIGAKPTV--SPFERVGLNSSVGGIQVDGQFRT-RMPGIFAIGDVAAFPLK 349
            I AD ++IG G +P V  +     GL  + G + VD +  T + P ++A GDVA  P  
Sbjct: 223 EIKADLVIIGPGERPNVVLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAA 282

Query: 350 MYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEG 397
              +  R+     A  + +      ++        L    S V +   
Sbjct: 283 ETGKGGRIALWAIAVAAGRI-AAENIAGALRIPGLLGTVISDVGDLCA 329

Length = 415

>gnl|CDD|170080 PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

 Score =  152 bits (386), Expect = 1e-41
 Identities = 87/297 (29%), Positives = 137/297 (46%), Gaps = 25/297 (8%)

Query: 51  NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPAR 110
            +  +IVGGG AA  AA +  + G   G L + S E + PYERP L+K  L     +  +
Sbjct: 3   EKTIIIVGGGQAAAMAAASLRQQGF-TGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQ 61

Query: 111 LPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVAT 170
           +                 W++E  + +     + ++  + + L+  +G+   +  L +AT
Sbjct: 62  V-------------LPANWWQENNVHLHSGVTIKTLGRDTRELVLTNGESWHWDQLFIAT 108

Query: 171 GCTASRFP--EKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVG 228
           G  A   P  + +G        +R   DA  L   L+  + VV+VG G IG+E+AA+A  
Sbjct: 109 GAAARPLPLLDALG---ERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQ 165

Query: 229 WKLDTTIIFPENHLLQRLFTPSLAQRY-EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK 287
            +   T+I     ++ R   P   QRY  Q +QQ GV+ +   +I   E   DG    + 
Sbjct: 166 RRCKVTVIELAATVMGRN-APPPVQRYLLQRHQQAGVRILLNNAI---EHVVDGEKVELT 221

Query: 288 LEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVA 344
           L+ G T+ AD ++ GIG            L+++  GI +D   RT  P IFA GDVA
Sbjct: 222 LQSGETLQADVVIYGIGISANDQLAREANLDTA-NGIVIDEACRTCDPAIFAGGDVA 277

Length = 396

>gnl|CDD|224171 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion]

 Score =  137 bits (348), Expect = 1e-34
 Identities = 76/311 (24%), Positives = 132/311 (42%), Gaps = 39/311 (12%)

Query: 52  REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARL 111
           ++ VI+G G A        +E       + +  +E    Y R  L+              
Sbjct: 4   QKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSS------------- 50

Query: 112 PGFHTCVGSGGER------QTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGS 165
                 V +G +          +WY+E GI +   + V  ID   + + T++G+ + Y  
Sbjct: 51  ------VLAGEKTAEDISLNRNDWYEENGITLYTGEKVIQIDRANKVVTTDAGRTVSYDK 104

Query: 166 LIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAA 225
           LI+ATG      P   G  LPGV   R + D +A++      KK VV+GGG +G+E A  
Sbjct: 105 LIIATGSYPFILPIP-GSDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARG 163

Query: 226 AVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 285
                ++ T++     L++R    +  +   +  +  G+K +   + +  E   + +V  
Sbjct: 164 LKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTE--EIVGEDKVEG 221

Query: 286 VKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVG-----GIQVDGQFRTRMPGIFAI 340
           V+  DG+ I AD +V+ +G +P         L    G     GI V+   +T  P I+A+
Sbjct: 222 VRFADGTEIPADLVVMAVGIRP------NDELAKEAGLAVNRGIVVNDYMQTSDPDIYAV 275

Query: 341 GDVAAFPLKMY 351
           G+ A    K+Y
Sbjct: 276 GECAEHRGKVY 286

Length = 793

>gnl|CDD|162827 TIGR02374, nitri_red_nirB, nitrite reductase [NAD(P)H], large subunit

 Score =  126 bits (318), Expect = 7e-31
 Identities = 77/295 (26%), Positives = 130/295 (44%), Gaps = 25/295 (8%)

Query: 55  VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGF 114
           V+VG G A        ++       + I  +E +  Y R  L+       D     L   
Sbjct: 2   VLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSK 61

Query: 115 HTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTA 174
                        +WY++ GI +   + V  ID +++ +IT++G+ L Y  LI+ATG   
Sbjct: 62  -------------DWYEKHGITLYTGETVIQIDTDQKQVITDAGRTLSYDKLILATGSYP 108

Query: 175 SRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT 234
              P   G    GV+  R + D DA+++  ++ KK  V+GGG +G+E A       +D +
Sbjct: 109 FILPIP-GADKKGVYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVS 167

Query: 235 IIFPENHLLQRLFTPSLAQRYEQLYQ----QNGVKFVKGASIKNLEAGSDGRVAAVKLED 290
           +I    H    L    L Q   +L Q    Q G+ F+       +E     +   ++ +D
Sbjct: 168 VI----HHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEK--DTVEIVGATKADRIRFKD 221

Query: 291 GSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 345
           GS+++AD IV+  G +P        G+  +  GI V+   +T  P I+A+G+ A 
Sbjct: 222 GSSLEADLIVMAAGIRPNDELAVSAGIKVN-RGIIVNDSMQTSDPDIYAVGECAE 275

[Central intermediary metabolism, Nitrogen metabolism]. Length = 785

>gnl|CDD|163244 TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase

 Score =  115 bits (289), Expect = 6e-28
 Identities = 65/229 (28%), Positives = 111/229 (48%), Gaps = 14/229 (6%)

Query: 125 QTPE-WYKEKGIEMIYQDPVTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFP 178
            TPE + K++GI++     V  ++ E+QT++     TN      Y  LI++ G +    P
Sbjct: 48  YTPEVFIKKRGIDVKTNHEVIEVNDERQTVVVRNNKTNETYEESYDYLILSPGASPIV-P 106

Query: 179 EKIGGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTII 236
              G  L  V  +R++ D DA+   ++  K + VV++GGGYIG+E+A A      + T+I
Sbjct: 107 NIEGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLI 166

Query: 237 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 296
                +L +LF   + Q  E+  +++ +       + ++E    G         G    A
Sbjct: 167 HRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIE----GEERVKVFTSGGVYQA 222

Query: 297 DTIVIGIGAKPTVSPFERVGLNSSV-GGIQVDGQFRTRMPGIFAIGDVA 344
           D +++  G KP     +  GL     G I V+ +F+T +P I+A GDVA
Sbjct: 223 DMVILATGIKPNSELAKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVA 271

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol [Cellular processes, Detoxification]. Length = 427

>gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

 Score =  103 bits (259), Expect = 5e-24
 Identities = 72/331 (21%), Positives = 119/331 (35%), Gaps = 71/331 (21%)

Query: 55  VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY--ERPALTKGYLFPLDKKPARLP 112
           VI+GGG     AA+        D  + +V +  Y  +      +  G    L +    +P
Sbjct: 7   VILGGGFGGLSAAKRLARKL-PDVEITLVDRRDYHLFTPLLYEVATG---TLSESEIAIP 62

Query: 113 GFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGC 172
                             ++ G     Q  VT ID + + +       + Y  L+VA G 
Sbjct: 63  -------------LRALLRKSGNVQFVQGEVTDIDRDAKKVTLADLGEISYDYLVVALGS 109

Query: 173 TASRFPEKIGGYLPGV----HYIRDVADADA----LISSLEKAKK---------VVVVGG 215
             + F       +PG       ++ + DA      L+ + EKA +         +V+VGG
Sbjct: 110 ETNYFG------IPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGG 163

Query: 216 GYIGMEVAAAAVGWKLDTTIIFPEN------HLLQRL------FTPSLAQRYEQLYQQNG 263
           G  G+E+A             F  +       L++        F P L++  E+  ++ G
Sbjct: 164 GPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLG 223

Query: 264 VKFVKGASIKNLEAGSDGRVAAVKLEDG-STIDADTIVIGIGAKP-----TVSPFERVGL 317
           V+ + G  +  +          V L+DG   I ADT+V   G +       +S  E    
Sbjct: 224 VEVLLGTPVTEVTPDG------VTLKDGEEEIPADTVVWAAGVRASPLLKDLSGLE---- 273

Query: 318 NSSVGGIQVDGQFR-TRMPGIFAIGDVAAFP 347
               G + V+   +    P IFA GD AA  
Sbjct: 274 TDRRGRLVVNPTLQVPGHPDIFAAGDCAAVI 304

Length = 405

>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

 Score =  103 bits (260), Expect = 6e-24
 Identities = 86/328 (26%), Positives = 140/328 (42%), Gaps = 53/328 (16%)

Query: 55  VIVGGGNAAGY-AARTFVEHGM------ADGRL--------CIVSK------EAYAPYER 93
           V++G G  AGY AA    + G+         RL        CI SK      E       
Sbjct: 8   VVIGAG-PAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARH 66

Query: 94  PALTKGYLFPLDKKP-----ARLPGFHTCVGSGGERQTPEWYKEKGIEMIY-----QDPV 143
            A   G    + K       AR       +  G E       K+ G+++I       DP 
Sbjct: 67  AAKEYGISAEVPKIDFEKLLARKDKVVRLLTGGVEG----LLKKNGVDVIRGEARFVDP- 121

Query: 144 TSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS 203
            ++++  +   T +       ++I+ATG +  R P   G  + G   +    D+   +  
Sbjct: 122 HTVEVTGEDKETITAD-----NIIIATG-SRPRIPPGPG--IDGARIL----DSSDALFL 169

Query: 204 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNG 263
           LE  K +V+VGGGYIG+E A+         T++   + +L     P +++   +  ++ G
Sbjct: 170 LELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG-EDPEISKELTKQLEKGG 228

Query: 264 VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLN-SS 320
           VK +    +  +E   DG +  ++  +G TI+AD +++ IG KP       E  G+    
Sbjct: 229 VKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDD 288

Query: 321 VGGIQVDGQFRTRMPGIFAIGDVAAFPL 348
            G I+VD Q  T +PGI+AIGDV   P+
Sbjct: 289 RGFIKVDDQMTTNVPGIYAIGDVIGGPM 316

Length = 454

>gnl|CDD|181958 PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed

 Score =  102 bits (256), Expect = 2e-23
 Identities = 64/227 (28%), Positives = 104/227 (45%), Gaps = 12/227 (5%)

Query: 126 TPEWYKEKGIEMIYQDPVTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFPEK 180
           TPE + + GI++  +  V  +D + +T+      T S     Y  L++ATG      P  
Sbjct: 62  TPEEFIKSGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGAR-PIIPPI 120

Query: 181 IGGYLPGVHYIRDVADADALISSL--EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFP 238
               L  V+ ++ + D  AL   L  E+ K +V++G G+IG+E   AA     +  II  
Sbjct: 121 KNINLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQL 180

Query: 239 ENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADT 298
           E+ +L   F   +    E+  ++NGV+      +K+L    + +V  V   D    +AD 
Sbjct: 181 EDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIG--EDKVEGVV-TDKGEYEADV 237

Query: 299 IVIGIGAKPTVSPFERVGLNS-SVGGIQVDGQFRTRMPGIFAIGDVA 344
           +++  G KP     E  GL +   G I VD    T +  I+A GD A
Sbjct: 238 VIVATGVKPNTEFLEDTGLKTLKNGAIIVDEYGETSIENIYAAGDCA 284

Length = 444

>gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase

 Score =  101 bits (253), Expect = 5e-23
 Identities = 48/197 (24%), Positives = 89/197 (45%), Gaps = 10/197 (5%)

Query: 155 TNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVG 214
            N  + L+  ++I+ATG      P    G       +  V  +   ++  E  + +V++G
Sbjct: 124 ENGEETLEAKNIIIATGSRPRSLP----GPFDFDGKV--VITSTGALNLEEVPESLVIIG 177

Query: 215 GGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKN 274
           GG IG+E A+         T+I   + +L       +++  ++  ++ GVK +    +  
Sbjct: 178 GGVIGVEFASIFASLGSKVTVIEMLDRILP-GEDAEVSKVLQKALKKKGVKILTNTKVTA 236

Query: 275 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQVDGQFR 331
           +E   D      K  +  T+  + +++ +G KP       E++G+     G I VD   R
Sbjct: 237 VEKNDDQVTYENKGGETETLTGEKVLVAVGRKPNTEGLGLEKLGVELDERGRIVVDEYMR 296

Query: 332 TRMPGIFAIGDVAAFPL 348
           T +PGI+AIGDV   P+
Sbjct: 297 TNVPGIYAIGDVIGGPM 313

This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. Length = 460

>gnl|CDD|179902 PRK04965, PRK04965, NADH:flavorubredoxin oxidoreductase; Provisional

 Score = 92.3 bits (230), Expect = 2e-20
 Identities = 59/213 (27%), Positives = 100/213 (46%), Gaps = 13/213 (6%)

Query: 135 IEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDV 194
           + +     VT ID E Q + +  G   +Y  L++ATG +A   P      +  ++  ++ 
Sbjct: 73  LRLFPHTWVTDIDAEAQVVKSQ-GNQWQYDKLVLATGASAFVPPIPGRELMLTLNSQQEY 131

Query: 195 ADADALISSLEKAKKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLA 252
             A+  +     A++V+VVGGG IG E+A      G  +  T++     LL  L  P ++
Sbjct: 132 RAAETQLRD---AQRVLVVGGGLIGTELAMDLCRAGKAV--TLVDNAASLLASLMPPEVS 186

Query: 253 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF 312
            R +    + GV  +  + ++ LE    G      L+ G +I+ D ++   G +P  +  
Sbjct: 187 SRLQHRLTEMGVHLLLKSQLQGLEKTDSGIR--ATLDSGRSIEVDAVIAAAGLRPNTALA 244

Query: 313 ERVGLNSSVG-GIQVDGQFRTRMPGIFAIGDVA 344
            R GL  +V  GI VD   +T  P I+A+GD A
Sbjct: 245 RRAGL--AVNRGIVVDSYLQTSAPDIYALGDCA 275

Length = 377

>gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated

 Score = 88.3 bits (220), Expect = 8e-19
 Identities = 46/140 (32%), Positives = 68/140 (48%), Gaps = 7/140 (5%)

Query: 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 267
           K+V VVG GYI +E A    G   +T +         R F P + +   +  ++ G++  
Sbjct: 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFV-RGDAPLRGFDPDIRETLVEEMEKKGIRLH 226

Query: 268 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVG--LNSSVGG 323
             A  K +E  +DG +  + LEDG T+  D ++  IG +P       E  G  LN   G 
Sbjct: 227 TNAVPKAVEKNADGSLT-LTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEK-GY 284

Query: 324 IQVDGQFRTRMPGIFAIGDV 343
           I VD    T +PGI+A+GDV
Sbjct: 285 IIVDEYQNTNVPGIYAVGDV 304

Length = 450

>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

 Score = 81.6 bits (202), Expect = 4e-17
 Identities = 75/322 (23%), Positives = 116/322 (36%), Gaps = 75/322 (23%)

Query: 55  VIVGGG----NAAGYAAR------TFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPL 104
           +I+GGG     AA YAAR        +E G   G+L            +    + Y    
Sbjct: 7   IIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQL-----------TKTTDVENY---- 51

Query: 105 DKKPARLPGFHTCVGSGGERQTPEWYKEK--------GIEMIYQDPVTSIDIEKQT-LIT 155
                  PGF                 E+        G+E++  D V  +++E     + 
Sbjct: 52  -------PGFP-------GGILGPELMEQMKEQAEKFGVEIVE-DEVEKVELEGGPFKVK 96

Query: 156 NSGKLLKYGSLIVATGCTASRFPEKIGGYLP----GVHYIRDVADADALISSLEKAKKVV 211
                 +  ++I+ATG  A      + G       GV Y    A  D       K K VV
Sbjct: 97  TDKGTYEAKAVIIATG--AGARKLGVPGEEEFEGKGVSY---CATCDGF----FKGKDVV 147

Query: 212 VVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGAS 271
           V+GGG   +E A          T++   +      F        E+L +   ++ +    
Sbjct: 148 VIGGGDSAVEEALYLSKIAKKVTLVHRRDE-----FRAEEILV-ERLKKNVKIEVLTNTV 201

Query: 272 IKNLEAGSDGRVAAVKLEDG----STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVD 327
           +K +  G D  V  V L++       +  D + I IG  P     + +G+    G I VD
Sbjct: 202 VKEIL-GDD--VEGVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKGLGVLDENGYIVVD 258

Query: 328 GQFRTRMPGIFAIGDVAAFPLK 349
            +  T +PGIFA GDVA    +
Sbjct: 259 EEMETSVPGIFAAGDVADKNGR 280

Length = 305

>gnl|CDD|235660 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated

 Score = 82.6 bits (205), Expect = 6e-17
 Identities = 56/184 (30%), Positives = 96/184 (52%), Gaps = 14/184 (7%)

Query: 166 LIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK-AKKVVVVGGGYIGMEVAA 224
           L++ATG   SR P ++ G      Y+  ++  +AL  SLE   K +V+VGGG IG+E A+
Sbjct: 146 LLIATG---SR-PVELPGLPFDGEYV--ISSDEAL--SLETLPKSLVIVGGGVIGLEWAS 197

Query: 225 AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA 284
               + ++ T++   + +L       L++   +L ++ GV+ V GA +  L    DG V 
Sbjct: 198 MLADFGVEVTVVEAADRILP-TEDAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVL 256

Query: 285 AVKLEDGS--TIDADTIVIGIGAKPTVSPF--ERVGLNSSVGGIQVDGQFRTRMPGIFAI 340
            V   +G   T++AD +++ +G +P       E   ++   G IQ+D   +T+   I+AI
Sbjct: 257 IVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVEGGFIQIDDFCQTKERHIYAI 316

Query: 341 GDVA 344
           GDV 
Sbjct: 317 GDVI 320

Length = 472

>gnl|CDD|184103 PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional

 Score = 79.1 bits (195), Expect = 8e-16
 Identities = 57/229 (24%), Positives = 98/229 (42%), Gaps = 22/229 (9%)

Query: 126 TPEWYKE-KGIEMIYQDPVTSIDIEKQTL-----ITNSGKLLKYGSLIVATGCTASRFPE 179
           TPE + + K I +     V +I+ E+QT+      TN      Y  LI++ G +A+    
Sbjct: 63  TPEKFYDRKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLGF 122

Query: 180 KIGGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIF 237
           +          +R++ D DA+   ++  +  K +VVG GYI +EV        L  T+I 
Sbjct: 123 ES----DITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIH 178

Query: 238 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 297
             + +  +L    + Q       +  + +     I  +    +G    V  + G     D
Sbjct: 179 RSDKIN-KLMDADMNQPILDELDKREIPYRLNEEIDAI----NGN--EVTFKSGKVEHYD 231

Query: 298 TIVIGIGAKPTVSPFE--RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVA 344
            I+ G+G  P     E   + L+   G I V+ +F T +P I+AIGD+ 
Sbjct: 232 MIIEGVGTHPNSKFIESSNIKLDDK-GFIPVNDKFETNVPNIYAIGDII 279

Length = 438

>gnl|CDD|215691 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase

 Score = 71.5 bits (176), Expect = 1e-15
 Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVK 268
           +VVVVGGGYIG+E A+A        T++   + LL R F   +A+  ++  ++NG++ + 
Sbjct: 1   RVVVVGGGYIGLEFASALAKLGSKVTVVERRDRLL-RGFDEEIAKILQEKLEKNGIEVLL 59

Query: 269 GASIKNLEAGSDGRVAAVKLEDG 291
             +++ +E   DG V  +K  DG
Sbjct: 60  NTTVEEIEGNGDGVVVKLKTGDG 82

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 82

>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed

 Score = 78.6 bits (195), Expect = 1e-15
 Identities = 62/204 (30%), Positives = 103/204 (50%), Gaps = 27/204 (13%)

Query: 155 TNSGKLLKYGSLIVATGCTASRFPE-KIGGYLPGVHYIRDVADAD-ALISSLEKA-KKVV 211
            +  +     ++I+ATG      P  +I G        R +  +D AL  +L++  K +V
Sbjct: 127 EDGEQTYTAKNIILATGSRPRELPGIEIDG--------RVIWTSDEAL--NLDEVPKSLV 176

Query: 212 VVGGGYIGMEVAAAAVGWK---LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVK 268
           V+GGGYIG+E A+A   +     + TI+     +L       +++  E+  ++ G+K   
Sbjct: 177 VIGGGYIGVEFASA---YASLGAEVTIVEALPRILP-GEDKEISKLAERALKKRGIKIKT 232

Query: 269 GASIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVSP--FERVGLNSSVGG 323
           GA  K +E   DG    V LEDG    T++AD +++ +G +P       E +G+ +  G 
Sbjct: 233 GAKAKKVEQTDDG--VTVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTDRGF 290

Query: 324 IQVDGQFRTRMPGIFAIGDVAAFP 347
           I+VD Q RT +P I+AIGD+   P
Sbjct: 291 IEVDEQLRTNVPNIYAIGDIVGGP 314

Length = 462

>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated

 Score = 78.3 bits (194), Expect = 1e-15
 Identities = 51/196 (26%), Positives = 82/196 (41%), Gaps = 22/196 (11%)

Query: 157 SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIR-----DVADADALISSLEKAKKVV 211
            G+ L+   + + TG  A+  P      +PG+  +       +   D L   L      V
Sbjct: 128 GGETLRAKRIFINTGARAAI-PP-----IPGLDEVGYLTNETIFSLDELPEHL------V 175

Query: 212 VVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGAS 271
           ++GGGYIG+E A     +  + T+I     LL R     +A    ++ ++ G+     A 
Sbjct: 176 IIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR-EDEDVAAAVREILEREGIDVRLNAE 234

Query: 272 IKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQVD 327
              +E   DG    +    G+  I    I++ +G  P       E  G+   + G I+VD
Sbjct: 235 CIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVD 294

Query: 328 GQFRTRMPGIFAIGDV 343
            Q RT  PGI+A GD 
Sbjct: 295 DQLRTTNPGIYAAGDC 310

Length = 463

>gnl|CDD|184951 PRK14989, PRK14989, nitrite reductase subunit NirD; Provisional

 Score = 78.2 bits (193), Expect = 3e-15
 Identities = 62/238 (26%), Positives = 116/238 (48%), Gaps = 26/238 (10%)

Query: 127 PEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP 186
             +Y++ GI+++  +   +I+ +++ + +++G+ + Y  LI+ATG      P K G    
Sbjct: 66  EGFYEKHGIKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPWIPPIK-GSETQ 124

Query: 187 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL 246
                R + D +A+ +   ++K+  VVGGG +G+E A A     ++T +I          
Sbjct: 125 DCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAGALKNLGVETHVI---------E 175

Query: 247 FTPSLAQRYEQLYQQNGVKF--------VKGASIKN----LEAGSDGRVAAVKLEDGSTI 294
           F P L    EQL Q  G +         V+  + KN    ++ G + R   ++  DGS +
Sbjct: 176 FAPMLMA--EQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEAR-KTMRFADGSEL 232

Query: 295 DADTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMY 351
           + D IV   G +P      + GL  +  GGI ++   +T  P I+AIG+ A++  +++
Sbjct: 233 EVDFIVFSTGIRPQDKLATQCGLAVAPRGGIVINDSCQTSDPDIYAIGECASWNNRVF 290

Length = 847

>gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase, animal/bacterial

 Score = 76.0 bits (187), Expect = 7e-15
 Identities = 80/321 (24%), Positives = 138/321 (42%), Gaps = 50/321 (15%)

Query: 53  EFVIVGGGN--------AAGYAARTFVEHGMADGRLCI----VSKE----AYAPYERPAL 96
           +++++GGG+        AA + A+  +      G  C+    V K+    A    ER   
Sbjct: 4   DYLVIGGGSGGIASARRAAEHGAKALLVEAKKLGGTCVNVGCVPKKVMWYASDLAERMHD 63

Query: 97  TKGYLFPL-DKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE------ 149
              Y F    +     P           ++  + Y ++ +  IYQ  +    ++      
Sbjct: 64  AADYGFYQNLENTFNWPEL---------KEKRDAYVDR-LNGIYQKNLEKNKVDVIFGHA 113

Query: 150 ---KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK 206
              K   +  +G+      +++ATG   S FPE I G   G        D+D   +  E 
Sbjct: 114 RFTKDGTVEVNGRDYTAPHILIATGGKPS-FPENIPGAELGT-------DSDGFFALEEL 165

Query: 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF 266
            K+VV+VG GYI +E+A    G   +T ++     +L R F   +++   + Y++ G+  
Sbjct: 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL-RSFDSMISETITEEYEKEGINV 224

Query: 267 VKGASIKNLEAGSDGRVAAVKLEDGSTI-DADTIVIGIGAKPTVSPF--ERVGLN-SSVG 322
            K +    +E   +G++  +  EDG +I D D ++  IG KP       E VG+  +  G
Sbjct: 225 HKLSKPVKVEKTVEGKL-VIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKG 283

Query: 323 GIQVDGQFRTRMPGIFAIGDV 343
            I VD    T +PGI+A+GDV
Sbjct: 284 QIIVDEYQNTNVPGIYALGDV 304

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria [Energy metabolism, Electron transport]. Length = 450

>gnl|CDD|233700 TIGR02053, MerA, mercuric reductase

 Score = 75.9 bits (187), Expect = 1e-14
 Identities = 49/181 (27%), Positives = 86/181 (47%), Gaps = 12/181 (6%)

Query: 167 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAA 226
           ++ATG   +  P      +PG+        ++  ++     + + V+GGG IG+E+A A 
Sbjct: 133 LIATGARPAIPP------IPGLKEA-GYLTSEEALALDRIPESLAVIGGGAIGVELAQAF 185

Query: 227 VGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV 286
                + TI+   + LL R   P ++   E+   + G++ V  A +K +     G++  V
Sbjct: 186 ARLGSEVTILQRSDRLLPR-EEPEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITV 244

Query: 287 KLEDGS-TIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQVDGQFRTRMPGIFAIGD 342
           +   G   ++AD +++  G +P       E+ G+     GGI VD   RT  PGI+A GD
Sbjct: 245 EKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRTSNPGIYAAGD 304

Query: 343 V 343
           V
Sbjct: 305 V 305

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH [Cellular processes, Detoxification]. Length = 463

>gnl|CDD|236106 PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed

 Score = 75.1 bits (185), Expect = 2e-14
 Identities = 56/200 (28%), Positives = 93/200 (46%), Gaps = 28/200 (14%)

Query: 158 GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGY 217
            + + + + I+ATG +           LPG     +V   +  I S E  K +V+ G G 
Sbjct: 131 TETVTFDNAIIATGSSTR--------LLPGTSLSENVVTYEEQILSRELPKSIVIAGAGA 182

Query: 218 IGMEVAAAAVGWKLDTTIIFPENHLLQRLF-------TPSLAQRYEQLYQQNGVKFVKGA 270
           IGME A     + +D TI+      L R         +  +A++Y++L    GVK + G 
Sbjct: 183 IGMEFAYVLKNYGVDVTIV----EFLDRALPNEDAEVSKEIAKQYKKL----GVKILTGT 234

Query: 271 SIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQ 325
            +++++         V  +DG    ++AD ++  IG  P V  +  E+ G+  +  G I 
Sbjct: 235 KVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIA 294

Query: 326 VDGQFRTRMPGIFAIGDVAA 345
           +D   RT +P I+AIGDV A
Sbjct: 295 IDDYMRTNVPHIYAIGDVTA 314

Length = 466

>gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional

 Score = 73.9 bits (181), Expect = 5e-14
 Identities = 42/204 (20%), Positives = 85/204 (41%), Gaps = 15/204 (7%)

Query: 141 DPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADAL 200
           D VT +      L  + G++++  ++++A G      P       P V        +D  
Sbjct: 183 DEVTIVSAGVSQL--DDGQVIEGKNILIAVGNK----PI-----FPDVKGKEFTISSDDF 231

Query: 201 ISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ 260
              +++AK++ + G GYI +E+         ++  IF   + L R F  ++    E   +
Sbjct: 232 FK-IKEAKRIGIAGSGYIAVELINVVNRLGAESY-IFARGNRLLRKFDETIINELENDMK 289

Query: 261 QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLN-- 318
           +N +  +  A+++ +E   +  +     +       D ++  +G  P         LN  
Sbjct: 290 KNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIK 349

Query: 319 SSVGGIQVDGQFRTRMPGIFAIGD 342
           +  G I+VD   RT +  I+A+GD
Sbjct: 350 TPKGYIKVDDNQRTSVKHIYAVGD 373

Length = 561

>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated

 Score = 70.2 bits (173), Expect = 6e-13
 Identities = 55/199 (27%), Positives = 100/199 (50%), Gaps = 34/199 (17%)

Query: 165 SLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA-KKVVVVGGGYI 218
           ++++ATG   SR P      +PGV     +   D L++S     L+K  K + V+GGG I
Sbjct: 133 NIVIATG---SRVPP-----IPGV----WLILGDRLLTSDDAFELDKLPKSLAVIGGGVI 180

Query: 219 GMEVAAA--AVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLE 276
           G+E+  A   +G  +  T+    + +L  L  P ++++ +++  +   K   GA + ++E
Sbjct: 181 GLELGQALSRLG--VKVTVFERGDRIL-PLEDPEVSKQAQKILSKE-FKIKLGAKVTSVE 236

Query: 277 AGSDGRVAAVKLEDGS-TIDADTIVIGIGAKPTVSPFERVGL-NSSV-----GGIQVDGQ 329
              D +V  ++    + TI+AD +++  G +P     + +GL N+ +     G   VD  
Sbjct: 237 KSGDEKVEELEKGGKTETIEADYVLVATGRRPNT---DGLGLENTGIELDERGRPVVDEH 293

Query: 330 FRTRMPGIFAIGDVAAFPL 348
            +T +PGI+A GDV   P 
Sbjct: 294 TQTSVPGIYAAGDVNGKPP 312

Length = 460

>gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase; Provisional

 Score = 70.2 bits (173), Expect = 7e-13
 Identities = 47/162 (29%), Positives = 79/162 (48%), Gaps = 16/162 (9%)

Query: 194 VADADALISSLEKAKKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRL---FT 248
           + D+D+++S     + +++ G G IG E A+  AA+G K   T+I   + LL  L    +
Sbjct: 162 IYDSDSILSLDHLPRSLIIYGAGVIGCEYASIFAALGVK--VTLINTRDRLLSFLDDEIS 219

Query: 249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 308
            +L+         +GV       ++ +E G DG +  V L+ G  I AD ++   G    
Sbjct: 220 DALSYHLRD----SGVTIRHNEEVEKVEGGDDGVI--VHLKSGKKIKADCLLYANGRTGN 273

Query: 309 VSPF--ERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFP 347
                 E  GL   S G ++V+  ++T +P I+A+GDV  FP
Sbjct: 274 TDGLNLENAGLEADSRGQLKVNENYQTAVPHIYAVGDVIGFP 315

Length = 461

>gnl|CDD|180907 PRK07251, PRK07251, pyridine nucleotide-disulfide oxidoreductase; Provisional

 Score = 69.8 bits (171), Expect = 9e-13
 Identities = 53/187 (28%), Positives = 95/187 (50%), Gaps = 23/187 (12%)

Query: 165 SLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAA 224
           ++++ TG  ++  P      +PG+   + V D+  + S     +++ ++GGG IG+E A 
Sbjct: 121 TIVINTGAVSNVLP------IPGLADSKHVYDSTGIQSLETLPERLGIIGGGNIGLEFAG 174

Query: 225 --AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR 282
               +G K+  T++   + +L R   PS+A   +Q  +++G+ F+  A    ++   DG 
Sbjct: 175 LYNKLGSKV--TVLDAASTILPR-EEPSVAALAKQYMEEDGITFLLNAHTTEVKN--DGD 229

Query: 283 VAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL-NSSV-----GGIQVDGQFRTRMPG 336
              V  ED  T   D ++   G KP   P   +GL N+ +     G I+VD   +T +PG
Sbjct: 230 QVLVVTEDE-TYRFDALLYATGRKPNTEP---LGLENTDIELTERGAIKVDDYCQTSVPG 285

Query: 337 IFAIGDV 343
           +FA+GDV
Sbjct: 286 VFAVGDV 292

Length = 438

>gnl|CDD|213618 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant

 Score = 68.3 bits (167), Expect = 2e-12
 Identities = 41/139 (29%), Positives = 68/139 (48%), Gaps = 5/139 (3%)

Query: 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 267
           K +++ GGGYI +E A    G  + TT+I+    +L+  F   + +      ++ G++ +
Sbjct: 167 KSILIAGGGYIAVEFAGIFRGLGVQTTLIYRGKEILRG-FDDDMRRGLAAALEERGIRIL 225

Query: 268 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS--PFERVGLN-SSVGGI 324
              SI ++    DGR+ A  L     I AD ++   G  P  +    E  G+  + +G I
Sbjct: 226 PEDSITSISKDDDGRLKAT-LSKHEEIVADVVLFATGRSPNTNGLGLEAAGVRLNDLGAI 284

Query: 325 QVDGQFRTRMPGIFAIGDV 343
            VD   RT  P I+A+GDV
Sbjct: 285 AVDEYSRTSTPSIYAVGDV 303

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria [Energy metabolism, Electron transport]. Length = 446

>gnl|CDD|237198 PRK12771, PRK12771, putative glutamate synthase (NADPH) small subunit; Provisional

 Score = 68.0 bits (167), Expect = 4e-12
 Identities = 56/222 (25%), Positives = 92/222 (41%), Gaps = 42/222 (18%)

Query: 182 GGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAV--GWKLDTTII--F 237
            G L  V ++R V + +         K+VVV+GGG   M+ A  A   G + + TI+   
Sbjct: 246 AGVLDAVDFLRAVGEGEPPFLG----KRVVVIGGGNTAMDAARTARRLGAE-EVTIVYRR 300

Query: 238 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA--------VKLE 289
               +      P+  +  E+   + GV+     +   +E   +G               E
Sbjct: 301 TREDM------PAHDEEIEEA-LREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDE 353

Query: 290 DG---------STIDADTIVIGIGAKPTVSPFERV-GLNSSVGGIQVDGQFR-TRMPGIF 338
           DG          T++AD +V+ IG     +  E V G+    G +QVD  F  T  PG+F
Sbjct: 354 DGRPSPVTGEEETLEADLVVLAIGQDIDSAGLESVPGVEVGRGVVQVDPNFMMTGRPGVF 413

Query: 339 AIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH 380
           A GD+   P     RT     + H +++A++ I A L  + +
Sbjct: 414 AGGDMVPGP-----RTVTTA-IGHGKKAARN-IDAFLGGEPY 448

Length = 564

>gnl|CDD|200098 TIGR01423, trypano_reduc, trypanothione-disulfide reductase

 Score = 66.5 bits (162), Expect = 9e-12
 Identities = 44/147 (29%), Positives = 72/147 (48%), Gaps = 12/147 (8%)

Query: 205 EKAKKVVVVGGGYIGMEVAA-----AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY 259
           E  ++V+ VGGG+I +E A         G K+        N+++ R F  +L +   +  
Sbjct: 185 EPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCY---RNNMILRGFDSTLRKELTKQL 241

Query: 260 QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE--RVGL 317
           + NG+  +   +   +   +DG    V  E G T+D D +++ IG  P     +  +VG+
Sbjct: 242 RANGINIMTNENPAKVTLNADGS-KHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGV 300

Query: 318 N-SSVGGIQVDGQFRTRMPGIFAIGDV 343
             +  G IQVD   RT +P I+AIGDV
Sbjct: 301 ELTKKGAIQVDEFSRTNVPNIYAIGDV 327

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. Length = 486

>gnl|CDD|235779 PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated

 Score = 66.5 bits (163), Expect = 1e-11
 Identities = 53/191 (27%), Positives = 85/191 (44%), Gaps = 21/191 (10%)

Query: 167 IVATGCTASRFPEKIGGYLPGVHY-IRDVADADALISSLEKAKKVVVVGGGYIGMEVAAA 225
           I+ATG            +LPGV +  + + D    ++  E  KK+ V+G G IG+E+ + 
Sbjct: 150 IIATGSEPR--------HLPGVPFDNKIILDNTGALNFTEVPKKLAVIGAGVIGLELGSV 201

Query: 226 AVGWK---LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR 282
              W+    + TI+      L       +A+   + + + G+    G  I  ++ G  G 
Sbjct: 202 ---WRRLGAEVTILEALPAFLA-AADEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGV 257

Query: 283 VAAVKLEDGS--TIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQVDGQFRTRMPGI 337
             A    DG   T++ D +++ IG  P       E VGL     G I VD   RT +P +
Sbjct: 258 SVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHCRTNVPNV 317

Query: 338 FAIGDVAAFPL 348
           +AIGDV   P+
Sbjct: 318 YAIGDVVRGPM 328

Length = 475

>gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional

 Score = 66.0 bits (162), Expect = 1e-11
 Identities = 65/249 (26%), Positives = 98/249 (39%), Gaps = 51/249 (20%)

Query: 162 KYGSLIVATGCTASRFPEKIGGYLPGVH----YIRDVADADALISSLEKAKKVVVVGGGY 217
            Y ++ + TG    RF    G  L GV+    ++  V  A A    L   K+VVV+GGG 
Sbjct: 225 GYDAVFIGTGAGLPRFLGIPGENLGGVYSAVDFLTRVNQAVAD-YDLPVGKRVVVIGGGN 283

Query: 218 IGMEVAAAAVGWKL---DTTIIFPENHLLQRLFTPSLAQRYEQLY-QQNGVKFVKGASIK 273
             M+ A  A   +L     TI++      +R      A   E  + ++ GV+F   A+  
Sbjct: 284 TAMDAARTAK--RLGAESVTIVY------RRGREEMPASEEEVEHAKEEGVEFEWLAAPV 335

Query: 274 NLEAGSDGRVAAVKLE-----------------DGS--TIDADTIVIGIGAKP---TVSP 311
            +  G +GRV  V+                   +GS  T+ AD ++  IG  P    +S 
Sbjct: 336 EIL-GDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILST 394

Query: 312 FERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTAR--VEHVDHARQSAQH 369
              + LN     I  D   RT +PG+FA GD+           A   V  V   + +A+ 
Sbjct: 395 TPGLELNRWGTIIADDETGRTSLPGVFAGGDIV--------TGAATVVWAVGDGKDAAEA 446

Query: 370 CIKALLSAQ 378
            I   L   
Sbjct: 447 -IHEYLEGA 454

Length = 457

>gnl|CDD|234134 TIGR03169, Nterm_to_SelD, pyridine nucleotide-disulfide oxidoreductase family protein

 Score = 63.5 bits (155), Expect = 7e-11
 Identities = 69/323 (21%), Positives = 115/323 (35%), Gaps = 71/323 (21%)

Query: 55  VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGF 114
           V++GGG+      R +    +   R+ +++  +  PY       G L      P  + G 
Sbjct: 3   VLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYS------GML------PGMIAGH 50

Query: 115 HT-----------CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKY 163
           ++              +G                      T ID +++ ++  +   L Y
Sbjct: 51  YSLDEIRIDLRRLARQAGAR--------------FVIAEATGIDPDRRKVLLANRPPLSY 96

Query: 164 GSLIVATGCT----------ASRFPEK-IGGYLPGVHYIRDVADADALISSLEKAKKVVV 212
             L +  G T              P K I  +L     + + ADA          K++ V
Sbjct: 97  DVLSLDVGSTTPLSGVEGAADLAVPVKPIENFLARWEALLESADAP------PGTKRLAV 150

Query: 213 VGGGYIGMEVA-AAAVGWK----LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 267
           VGGG  G+E+A A               +     LL   F   + +   +L  + G++  
Sbjct: 151 VGGGAAGVEIALALRRRLPKRGLRGQVTLIAGASLLPG-FPAKVRRLVLRLLARRGIEVH 209

Query: 268 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP-FERVGLN-SSVGGIQ 325
           +GA +     G DG +    L DG T+ AD I+   GA+    P     GL     G ++
Sbjct: 210 EGAPV---TRGPDGALI---LADGRTLPADAILWATGARA--PPWLAESGLPLDEDGFLR 261

Query: 326 VDGQFRTR-MPGIFAIGDVAAFP 347
           VD   ++   P +FA GD A   
Sbjct: 262 VDPTLQSLSHPHVFAAGDCAVIT 284

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. Length = 364

>gnl|CDD|233345 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase

 Score = 61.9 bits (151), Expect = 1e-10
 Identities = 85/326 (26%), Positives = 134/326 (41%), Gaps = 80/326 (24%)

Query: 55  VIVGGG----NAAGYAART-----FVEHGMADGRLCIVSK-EAYAPYERPALTKGYLFPL 104
           +I+G G     AA YAAR       +E G   G+L   ++ E Y                
Sbjct: 3   IIIGAGPAGLTAAIYAARANLKPLLIEGGEPGGQLTTTTEVENY---------------- 46

Query: 105 DKKPARLPGFHTCVGSGGERQTPEWYKEK---GIEMIYQDPVTSIDIEKQT--LITNSGK 159
                  PGF   + SG E    +  ++    G E+IY++ V  +D   +   + T  GK
Sbjct: 47  -------PGFPEGI-SGPELME-KMKEQAVKFGAEIIYEE-VIKVDKSGRPFKVYTGDGK 96

Query: 160 LLKYGSLIVATGCTASRFPEKIGGYLP--------GVHYIRDVADADALISSLEKAKKVV 211
                ++I+ATG  AS    K+G  +P        GV Y    A  D       K K+V 
Sbjct: 97  EYTAKAVIIATG--AS--ARKLG--IPGEDEFWGRGVSY---CATCDG---PFFKNKEVA 144

Query: 212 VVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSL-AQRY--EQLYQQNGVKFVK 268
           VVGGG   +E A       L  T I  +  L+ R       A++   ++L +   ++F+ 
Sbjct: 145 VVGGGDSAIEEA-------LYLTRIAKKVTLVHR--RDKFRAEKILLDRLKKNPKIEFLW 195

Query: 269 GASIKNLEAGSDGRVAAVKLEDG-----STIDADTIVIGIGAKPTVSPFERVGLNSSVGG 323
            +++K  E   D +V  VK+++        ++ D + I IG +P     + +      G 
Sbjct: 196 NSTVK--EIVGDNKVEGVKIKNTVTGEEEELEVDGVFIAIGHEPNTELLKGLLELDENGY 253

Query: 324 IQVDGQFRTRMPGIFAIGDVAAFPLK 349
           I  D   RT +PG+FA GDV     +
Sbjct: 254 IVTDEGMRTSVPGVFAAGDVRDKGYR 279

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070) [Energy metabolism, Electron transport]. Length = 299

>gnl|CDD|185416 PTZ00052, PTZ00052, thioredoxin reductase; Provisional

 Score = 61.8 bits (150), Expect = 3e-10
 Identities = 49/182 (26%), Positives = 79/182 (43%), Gaps = 15/182 (8%)

Query: 166 LIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAK-KVVVVGGGYIGMEVAA 224
           +++ATG   S  PE +    PG       +D    I SL K   K ++VG  YIG+E A 
Sbjct: 148 ILIATGGRPS-IPEDV----PGAKEYSITSDD---IFSLSKDPGKTLIVGASYIGLETAG 199

Query: 225 AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA 284
                  D T+      +  R F    +++  +  ++ G  F++G    N+E   D    
Sbjct: 200 FLNELGFDVTVAV--RSIPLRGFDRQCSEKVVEYMKEQGTLFLEGVVPINIEKMDDK--I 255

Query: 285 AVKLEDGSTIDADTIVIGIGAKPTVS--PFERVGLNSSVGGIQVDGQFRTRMPGIFAIGD 342
            V   DG+T   DT++   G KP +       +G++ +     +     T +P IFA+GD
Sbjct: 256 KVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPNDCTNIPNIFAVGD 315

Query: 343 VA 344
           V 
Sbjct: 316 VV 317

Length = 499

>gnl|CDD|237197 PRK12770, PRK12770, putative glutamate synthase subunit beta; Provisional

 Score = 61.2 bits (149), Expect = 4e-10
 Identities = 67/221 (30%), Positives = 95/221 (42%), Gaps = 41/221 (18%)

Query: 162 KYGSLIVATGCTASRFPEKIGGYLPGVH----YIRDVADADALISSLEKA-----KKVVV 212
           KY ++++ATG   SR     G  LPGV+    Y+  +  A       EK      KKVVV
Sbjct: 118 KYDAVLIATGTWKSRKLGIPGEDLPGVYSALEYLFRIRAAKLGYLPWEKVPPVEGKKVVV 177

Query: 213 VGGGYIGMEVA--AAAVGWKLDT-----TI------IFPENHLLQR------LFTPSLAQ 253
           VG G   ++ A  A  +G +        TI       +    L+ R      L TP    
Sbjct: 178 VGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAPAGKYEIERLIARGVEFLELVTP---- 233

Query: 254 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST--IDADTIVIGIGAKPTVSP 311
              ++  +  V+ V+ A ++  E    GR   V +  GS   ++ADT+V  IG  PT  P
Sbjct: 234 --VRIIGEGRVEGVELAKMRLGEPDESGRPRPVPIP-GSEFVLEADTVVFAIGEIPT-PP 289

Query: 312 FERVGL---NSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 349
           F +  L    +  G I VD +  T   G+FA GDV   P K
Sbjct: 290 FAKECLGIELNRKGEIVVDEKHMTSREGVFAAGDVVTGPSK 330

Length = 352

>gnl|CDD|233412 TIGR01438, TGR, thioredoxin and glutathione reductase selenoprotein

 Score = 61.0 bits (148), Expect = 6e-10
 Identities = 48/184 (26%), Positives = 79/184 (42%), Gaps = 15/184 (8%)

Query: 166 LIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAA 225
            ++ATG    R+P   G     +        +D L S      K +VVG  Y+ +E A  
Sbjct: 147 FLIATGERP-RYPGIPGAKELCI-------TSDDLFSLPYCPGKTLVVGASYVALECAGF 198

Query: 226 AVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA-GSDGRVA 284
             G  LD T++     +L R F    A +  +  +++GVKF +      +E   +   V 
Sbjct: 199 LAGIGLDVTVMV--RSILLRGFDQDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVLVE 256

Query: 285 AVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGL--NSSVGGIQVDGQFRTRMPGIFAI 340
                +G   + DT+++ IG          E VG+  N   G I  D + +T +P I+A+
Sbjct: 257 FTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADEEEQTNVPYIYAV 316

Query: 341 GDVA 344
           GD+ 
Sbjct: 317 GDIL 320

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. Length = 484

>gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed

 Score = 59.6 bits (145), Expect = 2e-09
 Identities = 61/235 (25%), Positives = 100/235 (42%), Gaps = 34/235 (14%)

Query: 152 TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVV 211
           TL T  G+ +    +++A G +    P  I       H    +     L  SL      V
Sbjct: 118 TLRTGDGEEITADQVVIAAG-SRPVIPPVIADSGVRYHTSDTIMRLPELPESL------V 170

Query: 212 VVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-------FTPSLAQRYEQLYQQNGV 264
           +VGGG+I  E A       +  T++     LL+ L       FT   ++R++    +N  
Sbjct: 171 IVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRHLDDDISERFTELASKRWDVRLGRN-- 228

Query: 265 KFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLNSSVG 322
             V G S        DG    ++L+DGST++AD +++  G  P          G++    
Sbjct: 229 --VVGVS-------QDGSGVTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDED 279

Query: 323 G-IQVDGQFRTRMPGIFAIGDVAA-FPLK-MYDRTAR-VEH---VDHARQSAQHC 370
           G + VD   RT   G+FA+GDV++ + LK + +  AR V+H         ++ H 
Sbjct: 280 GRVVVDEYQRTSAEGVFALGDVSSPYQLKHVANHEARVVQHNLLHPDDLIASDHR 334

Length = 451

>gnl|CDD|130383 TIGR01316, gltA, glutamate synthase (NADPH), homotetrameric

 Score = 58.3 bits (141), Expect = 4e-09
 Identities = 45/219 (20%), Positives = 79/219 (36%), Gaps = 49/219 (22%)

Query: 162 KYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALI--------------SSLEKA 207
           +Y ++ + TG    +        +PG       +  D L               + +   
Sbjct: 218 QYDAVFIGTGAGLPKL-----MNIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAG 272

Query: 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ--QNGVK 265
           K VVV+GGG   ++ A  A+    +   ++       R     +  R E++    + GVK
Sbjct: 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLY-------RRTREDMTARVEEIAHAEEEGVK 325

Query: 266 F----------------VKGASIKNLEAG----SDGRVAAVKLEDGSTIDADTIVIGIGA 305
           F                V+    + ++      S  R      +    ++AD +++ IG 
Sbjct: 326 FHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGN 385

Query: 306 KPTVSPFERVGLNSSV-GGIQVDGQFRTRMPGIFAIGDV 343
                  E   L +S  G I VD   RT +PG+FA GD+
Sbjct: 386 GSNPIMAETTRLKTSERGTIVVDEDQRTSIPGVFAGGDI 424

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH [Amino acid biosynthesis, Glutamate family]. Length = 449

>gnl|CDD|180409 PRK06115, PRK06115, dihydrolipoamide dehydrogenase; Reviewed

 Score = 57.6 bits (139), Expect = 7e-09
 Identities = 50/177 (28%), Positives = 86/177 (48%), Gaps = 21/177 (11%)

Query: 185 LPGVHYI-RDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWK---LDTTIIFPEN 240
           LPGV    + + D+   +S  E  K +VV+G G IG+E+ +    W+      T++    
Sbjct: 151 LPGVTIDNQRIIDSTGALSLPEVPKHLVVIGAGVIGLELGSV---WRRLGAQVTVV---- 203

Query: 241 HLLQRLFTPSL----AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG---ST 293
             L R+  P      A+  ++   + G+KF  G+ +    AG+DG    ++   G    T
Sbjct: 204 EYLDRI-CPGTDTETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAET 262

Query: 294 IDADTIVIGIGAKPTVS--PFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPL 348
           + AD +++ IG +P       E VGL +   G+  +   RT +PG++ IGDV + P+
Sbjct: 263 LQADYVLVAIGRRPYTQGLGLETVGLETDKRGMLANDHHRTSVPGVWVIGDVTSGPM 319

Length = 466

>gnl|CDD|180743 PRK06912, acoL, dihydrolipoamide dehydrogenase; Validated

 Score = 57.4 bits (139), Expect = 7e-09
 Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 7/146 (4%)

Query: 203 SLEK-AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ 261
           SL      +++VGGG IG E A+         TI+     LL       +A    +  + 
Sbjct: 165 SLPSIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGE-DEDIAHILREKLEN 223

Query: 262 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIGAKPTVSP--FERVGLN 318
           +GVK   GA++K L   S  + A  + E     ++A+ +++ +G KP V     E+ G+ 
Sbjct: 224 DGVKIFTGAALKGLN--SYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQ 281

Query: 319 SSVGGIQVDGQFRTRMPGIFAIGDVA 344
            S  GI V+   +T +P I+A GDV 
Sbjct: 282 FSNKGISVNEHMQTNVPHIYACGDVI 307

Length = 458

>gnl|CDD|132493 TIGR03452, mycothione_red, mycothione reductase

 Score = 57.5 bits (139), Expect = 8e-09
 Identities = 54/202 (26%), Positives = 91/202 (45%), Gaps = 15/202 (7%)

Query: 152 TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVV 211
           TL T  G+ +    +++A G +    P  I     GV Y  +    + ++   E  + +V
Sbjct: 121 TLRTGDGEEITGDQIVIAAG-SRPYIPPAIAD--SGVRYHTN----EDIMRLPELPESLV 173

Query: 212 VVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGAS 271
           +VGGGYI  E A          TI+     LL+ L    ++ R+ ++ ++   K+     
Sbjct: 174 IVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRHL-DEDISDRFTEIAKK---KWDIRLG 229

Query: 272 IKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLNSSVGG-IQVDG 328
                   DG    + L+DGST+ AD +++  G  P       E  G+     G I+VD 
Sbjct: 230 RNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDE 289

Query: 329 QFRTRMPGIFAIGDVAA-FPLK 349
             RT   G++A+GDV++ + LK
Sbjct: 290 YGRTSARGVWALGDVSSPYQLK 311

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. Length = 452

>gnl|CDD|181196 PRK08010, PRK08010, pyridine nucleotide-disulfide oxidoreductase; Provisional

 Score = 56.6 bits (136), Expect = 1e-08
 Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 7/162 (4%)

Query: 185 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ 244
           +PG+     V D+  L++  E    + ++GGGYIG+E A+    +    TI+   +  L 
Sbjct: 136 IPGITTTPGVYDSTGLLNLKELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLP 195

Query: 245 RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 304
           R     +A     + +  GV  +  A ++ + +  + +V  V  E       D ++I  G
Sbjct: 196 RE-DRDIADNIATILRDQGVDIILNAHVERI-SHHENQV-QVHSEHAQLA-VDALLIASG 251

Query: 305 AKPTVSPFERVGLNSSV---GGIQVDGQFRTRMPGIFAIGDV 343
            +P  +         +V   G I VD    T    I+A+GDV
Sbjct: 252 RQPATASLHPENAGIAVNERGAIVVDKYLHTTADNIWAMGDV 293

Length = 441

>gnl|CDD|234119 TIGR03140, AhpF, alkyl hydroperoxide reductase subunit F

 Score = 55.8 bits (135), Expect = 3e-08
 Identities = 63/228 (27%), Positives = 100/228 (43%), Gaps = 44/228 (19%)

Query: 143 VTSIDIEKQ----TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG-VHYI-RDVAD 196
             +  IE +     +   SG++LK  S+IVATG   +R+  K+G  +PG   YI + VA 
Sbjct: 288 QRAKKIETEDGLIVVTLESGEVLKAKSVIVATG---ARW-RKLG--VPGEKEYIGKGVAY 341

Query: 197 ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE 256
                    K K V V+GGG  G+E A       +D   I     +L+  F   L  + +
Sbjct: 342 CPHCDGPFFKGKDVAVIGGGNSGIEAA-------IDLAGIVRHVTVLE--FADEL--KAD 390

Query: 257 QLYQQNGVKFVKGASIKNLE----------AGSDGRVAAVKLEDGST-----IDADTIVI 301
           ++ Q       K  S+ N++           G   +V  ++ +D ++     +D D + +
Sbjct: 391 KVLQD------KLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFV 444

Query: 302 GIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 349
            IG  P     +     +  G I +D + RT +PGIFA GDV   P K
Sbjct: 445 QIGLVPNTEWLKDAVELNRRGEIVIDERGRTSVPGIFAAGDVTTVPYK 492

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions]. Length = 515

>gnl|CDD|215281 PLN02507, PLN02507, glutathione reductase

 Score = 54.8 bits (132), Expect = 6e-08
 Identities = 54/194 (27%), Positives = 86/194 (44%), Gaps = 23/194 (11%)

Query: 158 GKLLKYGS--LIVATGCTASRFPEKIGGYLPGVHYIRDVA-DADALISSLEKAKKVVVVG 214
           G  L+Y +  +++ATG  A R        +PG    +++A  +D  +S  E  K+ VV+G
Sbjct: 161 GTKLRYTAKHILIATGSRAQRPN------IPG----KELAITSDEALSLEELPKRAVVLG 210

Query: 215 GGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI 272
           GGYI +E A+    +G  +D   +F    L  R F   +     +  +  G+      ++
Sbjct: 211 GGYIAVEFASIWRGMGATVD---LFFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTNL 267

Query: 273 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS--PFERVGLN-SSVGGIQVDGQ 329
             L     G    V  + G    AD ++   G  P       E VG+     G ++VD  
Sbjct: 268 TQLTKTEGG--IKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEY 325

Query: 330 FRTRMPGIFAIGDV 343
            RT +P I+AIGDV
Sbjct: 326 SRTNIPSIWAIGDV 339

Length = 499

>gnl|CDD|215301 PLN02546, PLN02546, glutathione reductase

 Score = 53.7 bits (129), Expect = 1e-07
 Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 14/189 (7%)

Query: 158 GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGY 217
           GKL    ++++A G      P+     +PG+ +     D+DA +    K +K+ +VGGGY
Sbjct: 212 GKLYTARNILIAVGGRPF-IPD-----IPGIEH---AIDSDAALDLPSKPEKIAIVGGGY 262

Query: 218 IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 277
           I +E A    G K D  +   +  +L R F   +     +     G++F    S + +  
Sbjct: 263 IALEFAGIFNGLKSDVHVFIRQKKVL-RGFDEEVRDFVAEQMSLRGIEFHTEESPQAIIK 321

Query: 278 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLN-SSVGGIQVDGQFRTRM 334
            +DG + ++K   G+      ++   G KP       E VG+     G I+VD   RT +
Sbjct: 322 SADGSL-SLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSRTSV 380

Query: 335 PGIFAIGDV 343
           P I+A+GDV
Sbjct: 381 PSIWAVGDV 389

Length = 558

>gnl|CDD|185553 PTZ00318, PTZ00318, NADH dehydrogenase-like protein; Provisional

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 64/267 (23%), Positives = 105/267 (39%), Gaps = 63/267 (23%)

Query: 139 YQDPVTSIDIE-KQTLITNSGK---------LLKYGSLIVATGCTASRFPEKIGGYLPGV 188
            +  V  +D E K+       K          + Y  L+VA G   + F   I G     
Sbjct: 80  LRAVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTF--NIPGVEERA 137

Query: 189 HYIRDVADADAL--------------ISSLEKAKK---VVVVGGGYIGMEVAAA-AVGWK 230
            ++++V  A  +               +S+E+ K+    VVVGGG  G+E AA  A  ++
Sbjct: 138 FFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFR 197

Query: 231 LDTTIIFPENHLLQRL--------------FTPSLAQRYEQL-YQQNGVKFVKGASIKNL 275
            D   + PE  L++                F  +L ++Y Q   ++ GV      ++K +
Sbjct: 198 DDVRNLNPE--LVEECKVTVLEAGSEVLGSFDQAL-RKYGQRRLRRLGVDIRTKTAVKEV 254

Query: 276 EAGSDGRVAAVKLEDGSTIDADTIV--IGIGAKPTV--SPFERVGLNSSVGGIQVDGQFR 331
                     V L+DG  I    +V   G+G  P       ++    +S G I VD   R
Sbjct: 255 LDKE------VVLKDGEVIPTGLVVWSTGVGPGPLTKQLKVDK----TSRGRISVDDHLR 304

Query: 332 TR-MPGIFAIGDVAAFPLKMYDRTARV 357
            + +P +FA+GD AA   +     A+V
Sbjct: 305 VKPIPNVFALGDCAANEERPLPTLAQV 331

Length = 424

>gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed

 Score = 52.5 bits (127), Expect = 3e-07
 Identities = 54/220 (24%), Positives = 82/220 (37%), Gaps = 41/220 (18%)

Query: 159 KLLK-YGSLIVATGCTASR---FPEKIGGYLPGVHY--------IRDVADADALISSLEK 206
           +LL  Y ++ + TG    R    P   G  L GVH+         R V   +       K
Sbjct: 224 ELLAEYDAVFLGTGAYKPRDLGIP---GRDLDGVHFAMDFLIQNTRRVLGDETEPFISAK 280

Query: 207 AKKVVVVGGGYIGMEVAAAAV--GWK----LDTTIIFPENHLLQRLFTPSLAQRYEQLY- 259
            K VVV+GGG  GM+    A+  G K     D   + P     +    P    + E    
Sbjct: 281 GKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRRN-KNNPWPYWPMKLEVSNA 339

Query: 260 QQNGVKFVKGASIKNLEAGSDGRVAAVKLED------------GS--TIDADTIVIGIGA 305
            + GV+       K  E G +G+V  VK+              GS   + AD +++ +G 
Sbjct: 340 HEEGVEREFNVQTKEFE-GENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGF 398

Query: 306 KPTVSP-FERVGLNSSVGG--IQVDGQFRTRMPGIFAIGD 342
               +    + G+     G     D  ++T  P +FA GD
Sbjct: 399 TGPEAGLLAQFGVELDERGRVAAPDNAYQTSNPKVFAAGD 438

Length = 471

>gnl|CDD|237790 PRK14694, PRK14694, putative mercuric reductase; Provisional

 Score = 52.2 bits (125), Expect = 4e-07
 Identities = 32/146 (21%), Positives = 70/146 (47%), Gaps = 7/146 (4%)

Query: 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 267
           ++++V+G   + +E+A A        T++     L Q    P++ +  E  +++ G++ +
Sbjct: 179 ERLLVIGASVVALELAQAFARLGSRVTVLARSRVLSQE--DPAVGEAIEAAFRREGIEVL 236

Query: 268 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLNSSVGGIQ 325
           K      ++   +GR   ++   G T+ A+ +++  G  P       E +G+ +  G I+
Sbjct: 237 KQTQASEVD--YNGREFILETNAG-TLRAEQLLVATGRTPNTENLNLESIGVETERGAIR 293

Query: 326 VDGQFRTRMPGIFAIGDVAAFPLKMY 351
           +D   +T + GI+A GD    P  +Y
Sbjct: 294 IDEHLQTTVSGIYAAGDCTDQPQFVY 319

Length = 468

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 16/124 (12%)

Query: 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH------------LLQRLFTPSLAQRY- 255
            VV++GGG  G+  A       L   +I  E              LL+      LA    
Sbjct: 1   DVVIIGGGPAGLAAAIRLARLGLKVALIEREGGTCYNRGCLPKKLLLEVAEGLELAIGLA 60

Query: 256 --EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE 313
             E++Y++ GV+ + G  + +++ G    V    +E G  I  D ++I  GA+P +    
Sbjct: 61  LPEEVYKEFGVEVLLGTEVVDIDRGE-KTVVLKDVETGREITYDKLIIATGARPRIPGIP 119

Query: 314 RVGL 317
            V +
Sbjct: 120 GVEV 123

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 22/153 (14%)

Query: 208 KKVVVVGGGYIGMEVAAAA--VGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK 265
           K VVVVGGG   M+ A AA  V      T+++       +   P+  + YE    ++GV+
Sbjct: 669 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT----KQEMPAWREEYE-EALEDGVE 723

Query: 266 FVKGASIKNLEA--------------GSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP 311
           F +  + ++ +A                 GR   V+  +  T++ADT++  IG +     
Sbjct: 724 FKELLNPESFDADGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTEL 783

Query: 312 FERVGLNSSVGG-IQVDGQFRTRMPGIFAIGDV 343
            +  G+     G   VD    T +  ++ IGDV
Sbjct: 784 LKANGIPLDKKGWPVVDANGETSLTNVYMIGDV 816

Length = 1019

>gnl|CDD|139246 PRK12814, PRK12814, putative NADPH-dependent glutamate synthase small subunit; Provisional

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 34/187 (18%)

Query: 179 EKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDT-TIIF 237
           E++ G + G+ ++R+VA   AL       KKVVV+GGG   ++ A  A+    ++ TI++
Sbjct: 299 EELPGVISGIDFLRNVALGTAL----HPGKKVVVIGGGNTAIDAARTALRLGAESVTILY 354

Query: 238 -------PENHL-----------LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS 279
                  P N             L+ L  P   +R E   +   +K  +G      E   
Sbjct: 355 RRTREEMPANRAEIEEALAEGVSLRELAAPVSIERSEGGLELTAIKMQQG------EPDE 408

Query: 280 DGRVAAVKLEDGS--TIDADTIVIGIGAKPTVSPFERVGLNSSVGG-IQVDGQ-FRTRMP 335
            GR   V +E GS  T+ ADT++  IG +      E  G+ +S  G ++VD +  +T + 
Sbjct: 409 SGRRRPVPVE-GSEFTLQADTVISAIGQQVDPPIAEAAGIGTSRNGTVKVDPETLQTSVA 467

Query: 336 GIFAIGD 342
           G+FA GD
Sbjct: 468 GVFAGGD 474

Length = 652

>gnl|CDD|236112 PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed

 Score = 47.5 bits (114), Expect = 9e-06
 Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 15/148 (10%)

Query: 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPS----LAQRYEQLYQQNGV 264
            ++VVG G  G E A+A     +  T++   + +L     P      A+  E+++ + G+
Sbjct: 179 HLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVL-----PGEDADAAEVLEEVFARRGM 233

Query: 265 KFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSSVG 322
             +K +  +++E   DG V  V L DG T++    ++ +G+ P  +    E  G+  +  
Sbjct: 234 TVLKRSRAESVERTGDGVV--VTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPS 291

Query: 323 G-IQVDGQFRTRMPGIFAIGDVAA-FPL 348
           G I VD   RT +PGI+A GD     PL
Sbjct: 292 GHITVDRVSRTSVPGIYAAGDCTGVLPL 319

Length = 466

>gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 44/163 (26%), Positives = 71/163 (43%), Gaps = 34/163 (20%)

Query: 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY--QQNGV 264
            KKV VVGGG   M+ A  A     +   I      + R     +  R E++   ++ G+
Sbjct: 570 GKKVAVVGGGNTAMDSARTAKRLGAERVTI------VYRRSEEEMPARLEEVKHAKEEGI 623

Query: 265 KF----------------VKGASIKNLEAG---SDGRVAAVKLEDGS--TIDADTIVIGI 303
           +F                VK   ++ +E G   + GR   V +  GS  T+D D +++ +
Sbjct: 624 EFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIP-GSTFTVDVDLVIVSV 682

Query: 304 GAKPT---VSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDV 343
           G  P     S    + LN   G I VD + ++ +PGI+A GD+
Sbjct: 683 GVSPNPLVPSSIPGLELNRK-GTIVVDEEMQSSIPGIYAGGDI 724

Length = 752

>gnl|CDD|226160 COG3634, AhpF, Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 54/203 (26%), Positives = 87/203 (42%), Gaps = 26/203 (12%)

Query: 157 SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRD--VADADALISSLEKAKKVVVVG 214
           +G +LK  ++I+ATG   +R+   +   +PG    R+  VA        L K K+V V+G
Sbjct: 308 NGAVLKARTVILATG---ARW-RNMN--VPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIG 361

Query: 215 GGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSL---AQRYEQLYQQNGVKFVKGAS 271
           GG  G+E A       +D   I     LL+  F P L   A   ++L     V  +  A 
Sbjct: 362 GGNSGVEAA-------IDLAGIVEHVTLLE--FAPELKADAVLQDKLRSLPNVTIITNAQ 412

Query: 272 IKNLEAGSDGRVAAVKLEDGST-----IDADTIVIGIGAKPTVSPFERVGLNSSVGGIQV 326
              +  G   +V  ++  D  +     ++ + + + IG  P     +     +  G I V
Sbjct: 413 TTEV-KGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGAVELNRRGEIIV 471

Query: 327 DGQFRTRMPGIFAIGDVAAFPLK 349
           D +  T +PG+FA GD    P K
Sbjct: 472 DARGETNVPGVFAAGDCTTVPYK 494

Length = 520

>gnl|CDD|180579 PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed

 Score = 44.9 bits (107), Expect = 6e-05
 Identities = 39/153 (25%), Positives = 69/153 (45%), Gaps = 21/153 (13%)

Query: 208 KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK 265
           K+++V+GGG IG+E+      +G ++D   +F +         P+  +   +++ +   K
Sbjct: 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQ-------VIPAADKDIVKVFTKRIKK 227

Query: 266 FVK---GASIKNLEAGSDGRVAAVKLEDGSTIDA----DTIVIGIGAKPTVSPF--ERVG 316
                    +  +EA  DG    V +E           D +++ +G  P       E+ G
Sbjct: 228 QFNIMLETKVTAVEAKEDGIY--VTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAG 285

Query: 317 LN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPL 348
           +     G I+VD Q RT +P IFAIGD+   P+
Sbjct: 286 VEVDERGFIRVDKQCRTNVPHIFAIGDIVGQPM 318

Length = 471

>gnl|CDD|222355 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide oxidoreductase

 Score = 43.4 bits (103), Expect = 7e-05
 Identities = 46/208 (22%), Positives = 77/208 (37%), Gaps = 35/208 (16%)

Query: 55  VIVGGGNAAG-YAARTFVEHGMADGRLCIVSKEA--------YAPYER---PALTKGYLF 102
           ++VG G AAG   A   ++ G A   + IV + A        + P+ R   P+   G   
Sbjct: 1   LVVGAG-AAGMAFADHLLDLGDAP--VIIVDRGAQPGGHWRKWYPFVRLHQPSFFYGDFG 57

Query: 103 P-------LDKKPARLPGFHTCVGSGGERQTP-EWY-KEKGIEMIYQDPVTSIDIEK--Q 151
                   +D  P           SG E     E   +  G+ +     VT+++ +    
Sbjct: 58  MPDLNALSIDTSPKWDGKAELA--SGAEIAAYLEDLARRYGLPIRLSTRVTAVERDGGRF 115

Query: 152 TLITNSGKLLKYGSLIVATGCTASRFPEKI-GGYLPGVHYIRDVADADALISSLEKAKKV 210
            +    G+ ++   ++ ATG  +   P    G    GVH +  +   D       K K V
Sbjct: 116 VVRLTDGETVRADYVVDATGAFSVPKPPGFPGADAEGVHLVDVLERID------LKGKTV 169

Query: 211 VVVGGGYIGMEVAAAAVGWKLDTTIIFP 238
            V+GGG+  ++ A   +    D T I  
Sbjct: 170 AVIGGGHTAIDAALNLLDLGKDVTWITR 197

Length = 202

>gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 63/258 (24%), Positives = 97/258 (37%), Gaps = 44/258 (17%)

Query: 160 LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRD--------VADADALISSLE-KAKKV 210
           L +Y ++ +ATG    R  +  G    GV +  D        V    A   +   K K+V
Sbjct: 206 LKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRV 265

Query: 211 VVVGGGYIGMEVAAAAV--GWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY-QQNGVKFV 267
           VV+GGG   M+ A  A+  G K   T  + E+   +    P+ A + E     + GV+ +
Sbjct: 266 VVIGGGDTAMDCAGTALRLGAK-SVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERL 324

Query: 268 KGASIKNLEAGSDGRVAAVKLED-------------------GST--IDADTIVIGIGAK 306
                K       GRV  VK                      G+     ADT+++ IG +
Sbjct: 325 PFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFE 384

Query: 307 PTVSPF--ERVGLNSSVGG-IQVDGQF-RTRMPGIFAIGDVAAFPLKMYDRTARVEHVDH 362
              +       GL     G I+VD    +T +PG+FA GD              V  +  
Sbjct: 385 GDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVR-----GAAL-VVWAIAE 438

Query: 363 ARQSAQHCIKALLSAQTH 380
            R++A+   K LL  +  
Sbjct: 439 GREAAKAIDKELLLGKAV 456

Length = 457

>gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit

 Score = 44.0 bits (104), Expect = 2e-04
 Identities = 49/214 (22%), Positives = 85/214 (39%), Gaps = 37/214 (17%)

Query: 208 KKVVVVGGGYIGMEVAAAAV---GWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGV 264
           K VVVVGGG   M+ A AA+   G +   T+++       + + P+  +  E    ++GV
Sbjct: 667 KHVVVVGGGNTAMDAARAALRVPGVE-KVTVVYRRT----KRYMPASREELE-EALEDGV 720

Query: 265 KFVKGASIKNLEAG-------------SDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP 311
            F +  S ++ E G             + GR   V   +   + ADT++  +G +     
Sbjct: 721 DFKELLSPESFEDGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDL 780

Query: 312 FERVGLNSSVGG-IQVDGQFR-TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH 369
            ++ G+     G   V+     T +  +F IGD    P  +      VE +   R++A  
Sbjct: 781 LQKNGIPLDEYGWPVVNQATGETNITNVFVIGDANRGPATI------VEAIADGRKAA-- 832

Query: 370 CIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVW 403
              A+LS +    D    F       E    +V+
Sbjct: 833 --NAILSREGLNSDVDKVF---PINEEVRLAEVY 861

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. Length = 1012

>gnl|CDD|183780 PRK12831, PRK12831, putative oxidoreductase; Provisional

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 39/161 (24%), Positives = 65/161 (40%), Gaps = 34/161 (21%)

Query: 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY--QQNGVK 265
           KKV VVGGG + M+ A  A+    +  I++       R     L  R E+++  ++ GV 
Sbjct: 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVY-------RRSEEELPARVEEVHHAKEEGVI 334

Query: 266 FVKGASIKNLEAGSDGRVAAVKLE-------DGS-------------TIDADTIVIGIGA 305
           F    +   +    +G V  +K         D S              ++ DT+++ +G 
Sbjct: 335 FDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGT 394

Query: 306 KPT---VSPFERVGLNSSVGGIQVDGQF-RTRMPGIFAIGD 342
            P     S  + + +N   G I  D +   T   G+FA GD
Sbjct: 395 SPNPLISSTTKGLKINKR-GCIVADEETGLTSKEGVFAGGD 434

Length = 464

>gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

 Score = 42.6 bits (101), Expect = 3e-04
 Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 20/114 (17%)

Query: 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTII-------FPENHLLQRLFT-----PSLAQRY 255
           K++V++GGG+ G+  A        D  I             LL  + T       +A   
Sbjct: 4   KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPL 63

Query: 256 EQLYQ-QNGVKFVKGASIK-NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 307
             L +    V+FV+G     + +A        V L D   I  D +V+ +G++ 
Sbjct: 64  RALLRKSGNVQFVQGEVTDIDRDAKK------VTLADLGEISYDYLVVALGSET 111

Length = 405

>gnl|CDD|237806 PRK14727, PRK14727, putative mercuric reductase; Provisional

 Score = 40.7 bits (95), Expect = 0.001
 Identities = 44/190 (23%), Positives = 77/190 (40%), Gaps = 17/190 (8%)

Query: 166 LIVATGCTASRFPEKIGGYLPGVHYIRDVA-DADALISSLEKAKKVVVVGGGYIGMEVAA 224
            ++ATG T +  P  I G +   ++    A  +D L +SL       V+G   +  E+A 
Sbjct: 154 CLIATGSTPT-IP-PIPGLMDTPYWTSTEALFSDELPASL------TVIGSSVVAAEIAQ 205

Query: 225 AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA 284
           A    +L + +       L     P L +     +++ G++ +       +E   +G V 
Sbjct: 206 AYA--RLGSRVTILARSTLLFREDPLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFV- 262

Query: 285 AVKLEDGSTIDADTIVIGIG--AKPTVSPFERVGLNSSV-GGIQVDGQFRTRMPGIFAIG 341
            +    G    A+ ++I  G  A       E VG+ +   G I V+    T  P I+A G
Sbjct: 263 -LTTGHGELR-AEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMETSAPDIYAAG 320

Query: 342 DVAAFPLKMY 351
           D +  P  +Y
Sbjct: 321 DCSDLPQFVY 330

Length = 479

>gnl|CDD|234119 TIGR03140, AhpF, alkyl hydroperoxide reductase subunit F

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 25/115 (21%)

Query: 210 VVVVGGGYIGMEVAAAAV-----------------GWKLDTTIIFPENHLLQRLFT-PSL 251
           V+VVGGG  G   AAAA+                 G   DT  I  EN +     T   L
Sbjct: 215 VLVVGGGPAG---AAAAIYAARKGLRTAMVAERIGGQVKDTVGI--ENLISVPYTTGSQL 269

Query: 252 AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 306
           A   E+  +Q  +  ++    K +E  ++  +  V LE G  + A ++++  GA+
Sbjct: 270 AANLEEHIKQYPIDLMENQRAKKIE--TEDGLIVVTLESGEVLKAKSVIVATGAR 322

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions]. Length = 515

>gnl|CDD|234819 PRK00711, PRK00711, D-amino acid dehydrogenase small subunit; Validated

 Score = 39.4 bits (93), Expect = 0.003
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)

Query: 245 RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 304
           +LFT  LA   EQL    GVKF     +  L     GR+  V+   G  I AD  V+ +G
Sbjct: 201 QLFTQRLAAMAEQL----GVKFRFNTPVDGLLV-EGGRITGVQTGGG-VITADAYVVALG 254

Length = 416

>gnl|CDD|237942 PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional

 Score = 39.8 bits (94), Expect = 0.003
 Identities = 36/133 (27%), Positives = 54/133 (40%), Gaps = 28/133 (21%)

Query: 195 ADADALISSLEKAKK---VVVVGGGYIGMEVAAAAV-----------------GWKLDTT 234
             A A  +    AK    V+VVGGG  G   AAAA+                 G  LDT 
Sbjct: 196 TGAAARAAEELNAKDPYDVLVVGGGPAG---AAAAIYAARKGIRTGIVAERFGGQVLDTM 252

Query: 235 IIFPENHLLQRLFT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST 293
            I  EN +       P LA   E+  ++  V  +       LE  +   +  V+L +G+ 
Sbjct: 253 GI--ENFISVPETEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAAG--LIEVELANGAV 308

Query: 294 IDADTIVIGIGAK 306
           + A T+++  GA+
Sbjct: 309 LKAKTVILATGAR 321

Length = 517

>gnl|CDD|237942 PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional

 Score = 39.4 bits (93), Expect = 0.004
 Identities = 44/160 (27%), Positives = 64/160 (40%), Gaps = 34/160 (21%)

Query: 206 KAKKVVVVGGGYIGMEVA---AAAVGWKLDTTIIFPENH--LLQRLFTPSLA-----QRY 255
           K K+V V+GGG  G+E A   A  V             H  +L+  F P L      Q  
Sbjct: 350 KGKRVAVIGGGNSGVEAAIDLAGIV------------KHVTVLE--FAPELKADQVLQD- 394

Query: 256 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST-----IDADTIVIGIGAKPTVS 310
            +L     V  +  A    +  G   +V  +  +D +T     ++ + + + IG  P   
Sbjct: 395 -KLRSLPNVTIITNAQTTEVT-GDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTE 452

Query: 311 PF-ERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 349
                V LN   G I VD +  T +PG+FA GD    P K
Sbjct: 453 WLKGTVELNRR-GEIIVDARGATSVPGVFAAGDCTTVPYK 491

Length = 517

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	488
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	100.0
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	100.0
PRK14989	847	nitrite reductase subunit NirD; Provisional	100.0
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	100.0
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	100.0
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	100.0
PRK13512	438	coenzyme A disulfide reductase; Provisional	100.0
PRK09564	444	coenzyme A disulfide reductase; Reviewed	100.0
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	100.0
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	100.0
PRK06370	463	mercuric reductase; Validated	100.0
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	100.0
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	100.0
PLN02507	499	glutathione reductase	100.0
PRK14694	468	putative mercuric reductase; Provisional	100.0
PRK06116	450	glutathione reductase; Validated	100.0
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	100.0
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	100.0
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	100.0
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	100.0
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	100.0
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	100.0
TIGR02053	463	MerA mercuric reductase. This model represents the	100.0
PRK07845	466	flavoprotein disulfide reductase; Reviewed	100.0
PTZ00058	561	glutathione reductase; Provisional	100.0
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	100.0
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	100.0
PLN02546	558	glutathione reductase	100.0
PRK13748	561	putative mercuric reductase; Provisional	100.0
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	100.0
PRK07846	451	mycothione reductase; Reviewed	100.0
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	100.0
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	100.0
PRK14727	479	putative mercuric reductase; Provisional	100.0
PTZ00153	659	lipoamide dehydrogenase; Provisional	100.0
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	100.0
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	100.0
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	100.0
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	100.0
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	100.0
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	100.0
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	100.0
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	100.0
PRK12831	464	putative oxidoreductase; Provisional	100.0
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	100.0
PTZ00052	499	thioredoxin reductase; Provisional	100.0
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	100.0
PRK12779	944	putative bifunctional glutamate synthase subunit b	100.0
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	100.0
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	100.0
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	100.0
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	100.0
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	100.0
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	100.0
PRK12814	652	putative NADPH-dependent glutamate synthase small	100.0
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	100.0
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	100.0
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	100.0
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	100.0
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	100.0
PRK10262	321	thioredoxin reductase; Provisional	100.0
PRK13984	604	putative oxidoreductase; Provisional	100.0
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	100.0
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	100.0
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	100.0
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	100.0
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	100.0
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	100.0
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	100.0
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	100.0
PRK12770	352	putative glutamate synthase subunit beta; Provisio	99.97
PLN02852	491	ferredoxin-NADP+ reductase	99.96
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	99.95
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	99.95
PRK06567	1028	putative bifunctional glutamate synthase subunit b	99.94
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	99.94
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	99.93
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	99.92
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	99.92
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	99.89
KOG2755	334	consensus Oxidoreductase [General function predict	99.88
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	99.87
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	99.86
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	99.83
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	99.72
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	99.71
PTZ00188	506	adrenodoxin reductase; Provisional	99.69
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	99.68
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	99.67
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	99.65
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	99.65
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	99.63
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	99.63
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	99.55
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	99.47
PRK09897	534	hypothetical protein; Provisional	99.36
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	99.33
COG2081	408	Predicted flavoproteins [General function predicti	99.21
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	99.2
PRK08401	466	L-aspartate oxidase; Provisional	99.11
PRK07804	541	L-aspartate oxidase; Provisional	99.05
PRK06175	433	L-aspartate oxidase; Provisional	99.04
COG0579	429	Predicted dehydrogenase [General function predicti	99.0
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	98.98
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	98.96
PRK08071	510	L-aspartate oxidase; Provisional	98.94
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	98.94
PRK08275	554	putative oxidoreductase; Provisional	98.92
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	98.92
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	98.91
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	98.91
PRK09077	536	L-aspartate oxidase; Provisional	98.89
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	98.89
PRK07395	553	L-aspartate oxidase; Provisional	98.88
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	98.85
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	98.84
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	98.84
PRK12842	574	putative succinate dehydrogenase; Reviewed	98.84
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	98.83
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.83
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	98.82
PLN02815	594	L-aspartate oxidase	98.82
PRK06847	375	hypothetical protein; Provisional	98.81
PF14759	85	Reductase_C: Reductase C-terminal; PDB: 3FG2_P 3LX	98.79
PRK07512	513	L-aspartate oxidase; Provisional	98.78
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	98.77
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	98.77
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	98.76
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	98.76
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	98.75
PRK11728	393	hydroxyglutarate oxidase; Provisional	98.72
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	98.72
PRK13977	576	myosin-cross-reactive antigen; Provisional	98.72
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	98.7
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.69
PLN02463	447	lycopene beta cyclase	98.68
PRK06834	488	hypothetical protein; Provisional	98.68
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.68
COG2081	408	Predicted flavoproteins [General function predicti	98.67
PRK10015	429	oxidoreductase; Provisional	98.66
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.66
PRK10157	428	putative oxidoreductase FixC; Provisional	98.65
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.64
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	98.64
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	98.64
PRK07190	487	hypothetical protein; Provisional	98.63
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.6
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.59
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.59
PRK06184	502	hypothetical protein; Provisional	98.59
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	98.58
PRK07236	386	hypothetical protein; Provisional	98.57
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	98.55
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	98.54
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	98.54
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	98.54
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	98.53
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	98.52
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	98.51
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	98.5
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	98.5
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	98.49
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	98.49
PRK09126	392	hypothetical protein; Provisional	98.49
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.48
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	98.48
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	98.48
PTZ00383	497	malate:quinone oxidoreductase; Provisional	98.48
PRK08244	493	hypothetical protein; Provisional	98.48
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	98.47
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	98.46
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	98.46
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	98.45
PRK07045	388	putative monooxygenase; Reviewed	98.43
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	98.43
PRK07233	434	hypothetical protein; Provisional	98.43
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.43
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	98.42
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	98.42
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	98.42
PLN02697	529	lycopene epsilon cyclase	98.41
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	98.41
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	98.41
PRK08274	466	tricarballylate dehydrogenase; Validated	98.41
PLN02612	567	phytoene desaturase	98.41
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	98.4
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.4
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.4
PRK05868	372	hypothetical protein; Validated	98.4
PRK08013	400	oxidoreductase; Provisional	98.39
PRK08163	396	salicylate hydroxylase; Provisional	98.39
PRK06126	545	hypothetical protein; Provisional	98.38
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.38
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	98.38
PRK06185	407	hypothetical protein; Provisional	98.37
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	98.37
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	98.36
PRK07588	391	hypothetical protein; Provisional	98.36
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	98.35
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	98.35
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	98.34
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.34
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	98.33
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.32
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.32
PRK06753	373	hypothetical protein; Provisional	98.31
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	98.31
PRK08132	547	FAD-dependent oxidoreductase; Provisional	98.31
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.29
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.29
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	98.28
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	98.28
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.27
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.27
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.27
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	98.26
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	98.26
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	98.26
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	98.26
PRK11445	351	putative oxidoreductase; Provisional	98.26
PRK06847	375	hypothetical protein; Provisional	98.25
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	98.25
PRK14694	468	putative mercuric reductase; Provisional	98.25
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.25
PRK11883	451	protoporphyrinogen oxidase; Reviewed	98.24
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	98.24
TIGR00275	400	flavoprotein, HI0933 family. The model when search	98.24
PRK06116	450	glutathione reductase; Validated	98.24
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	98.23
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.23
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	98.23
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.23
PRK07846	451	mycothione reductase; Reviewed	98.22
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	98.22
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	98.22
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.22
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	98.22
PLN02661	357	Putative thiazole synthesis	98.21
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	98.21
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	98.21
PRK05257	494	malate:quinone oxidoreductase; Validated	98.21
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	98.21
PRK06996	398	hypothetical protein; Provisional	98.21
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	98.2
PLN02487	569	zeta-carotene desaturase	98.19
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.19
PRK06370	463	mercuric reductase; Validated	98.19
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.19
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	98.18
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.18
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	98.18
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	98.18
PRK13339	497	malate:quinone oxidoreductase; Reviewed	98.18
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	98.17
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	98.17
TIGR02053	463	MerA mercuric reductase. This model represents the	98.17
PRK07845	466	flavoprotein disulfide reductase; Reviewed	98.16
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	98.16
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	98.15
PRK12416	463	protoporphyrinogen oxidase; Provisional	98.14
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.14
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	98.13
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.12
PLN02507	499	glutathione reductase	98.12
PRK06475	400	salicylate hydroxylase; Provisional	98.12
PRK14989	847	nitrite reductase subunit NirD; Provisional	98.12
PRK07236	386	hypothetical protein; Provisional	98.12
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	98.12
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.1
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	98.1
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	98.09
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	98.09
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	98.08
PRK12770	352	putative glutamate synthase subunit beta; Provisio	98.07
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	98.07
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.06
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	98.06
PTZ00052	499	thioredoxin reductase; Provisional	98.06
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	98.05
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.05
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	98.05
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	98.04
PRK07121	492	hypothetical protein; Validated	98.04
PRK13748	561	putative mercuric reductase; Provisional	98.03
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	98.02
PRK06834	488	hypothetical protein; Provisional	98.01
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	98.01
PLN02463	447	lycopene beta cyclase	98.01
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	98.0
PRK14727	479	putative mercuric reductase; Provisional	97.99
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	97.98
PRK07045	388	putative monooxygenase; Reviewed	97.98
PRK07538	413	hypothetical protein; Provisional	97.98
PRK12779	944	putative bifunctional glutamate synthase subunit b	97.96
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.96
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	97.96
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	97.96
PTZ00058	561	glutathione reductase; Provisional	97.96
COG2907	447	Predicted NAD/FAD-binding protein [General functio	97.95
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	97.94
PRK10262	321	thioredoxin reductase; Provisional	97.91
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	97.91
PRK08163	396	salicylate hydroxylase; Provisional	97.9
PRK10157	428	putative oxidoreductase FixC; Provisional	97.9
PRK07190	487	hypothetical protein; Provisional	97.89
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	97.89
PRK08294	634	phenol 2-monooxygenase; Provisional	97.89
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	97.89
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	97.88
PRK08244	493	hypothetical protein; Provisional	97.88
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	97.88
PRK07588	391	hypothetical protein; Provisional	97.88
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	97.88
PLN02464	627	glycerol-3-phosphate dehydrogenase	97.87
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	97.87
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	97.87
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	97.85
PRK05868	372	hypothetical protein; Validated	97.84
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	97.84
PRK12831	464	putative oxidoreductase; Provisional	97.83
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	97.82
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	97.82
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	97.82
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	97.81
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	97.81
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.8
PLN02852	491	ferredoxin-NADP+ reductase	97.8
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	97.8
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.79
PRK06184	502	hypothetical protein; Provisional	97.79
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	97.79
PLN02546	558	glutathione reductase	97.77
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	97.77
PRK09126	392	hypothetical protein; Provisional	97.76
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.75
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	97.75
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	97.75
PLN02697	529	lycopene epsilon cyclase	97.74
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	97.74
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	97.72
PTZ00188	506	adrenodoxin reductase; Provisional	97.71
PRK08013	400	oxidoreductase; Provisional	97.7
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	97.7
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.7
PRK07208	479	hypothetical protein; Provisional	97.69
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	97.69
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	97.69
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	97.67
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	97.67
PRK06753	373	hypothetical protein; Provisional	97.66
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	97.66
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	97.64
PLN02661	357	Putative thiazole synthesis	97.64
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.63
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	97.63
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	97.63
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	97.63
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	97.62
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	97.6
PLN02529	738	lysine-specific histone demethylase 1	97.6
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	97.6
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	97.59
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	97.58
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	97.58
PRK08132	547	FAD-dependent oxidoreductase; Provisional	97.57
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	97.57
PRK06475	400	salicylate hydroxylase; Provisional	97.56
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	97.56
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.56
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	97.56
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.54
PRK09897	534	hypothetical protein; Provisional	97.53
PRK12814	652	putative NADPH-dependent glutamate synthase small	97.53
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	97.53
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	97.53
PRK10015	429	oxidoreductase; Provisional	97.52
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.51
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	97.5
PRK06185	407	hypothetical protein; Provisional	97.48
PLN02785	587	Protein HOTHEAD	97.48
COG3349	485	Uncharacterized conserved protein [Function unknow	97.48
PLN02568	539	polyamine oxidase	97.48
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	97.46
PLN02268	435	probable polyamine oxidase	97.44
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	97.44
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	97.42
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	97.42
TIGR00275	400	flavoprotein, HI0933 family. The model when search	97.41
PLN02576	496	protoporphyrinogen oxidase	97.39
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	97.39
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	97.37
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	97.37
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	97.37
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	97.36
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	97.35
PLN02985	514	squalene monooxygenase	97.35
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	97.35
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	97.33
PRK06126	545	hypothetical protein; Provisional	97.33
PLN02328	808	lysine-specific histone demethylase 1 homolog	97.33
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	97.32
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	97.3
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	97.3
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	97.3
PRK06996	398	hypothetical protein; Provisional	97.3
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	97.29
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	97.28
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	97.27
PRK13984	604	putative oxidoreductase; Provisional	97.27
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	97.26
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.26
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	97.23
PTZ00367	567	squalene epoxidase; Provisional	97.23
PRK07538	413	hypothetical protein; Provisional	97.22
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	97.2
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	97.17
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	97.17
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	97.16
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	97.16
KOG2853	509	consensus Possible oxidoreductase [General functio	97.15
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	97.15
PF14721	133	AIF_C: Apoptosis-inducing factor, mitochondrion-as	97.14
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	97.13
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	97.13
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	97.09
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	97.09
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	97.09
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	97.07
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	97.06
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	97.05
PRK07804	541	L-aspartate oxidase; Provisional	97.05
PRK11445	351	putative oxidoreductase; Provisional	97.04
PRK06567	1028	putative bifunctional glutamate synthase subunit b	97.03
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	97.01
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	97.01
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	97.0
PLN02676	487	polyamine oxidase	96.98
PRK08401	466	L-aspartate oxidase; Provisional	96.98
COG3573	552	Predicted oxidoreductase [General function predict	96.95
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	96.94
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	96.92
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	96.9
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	96.9
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	96.89
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	96.84
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	96.82
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	96.8
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	96.8
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	96.79
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	96.79
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	96.77
PRK08275	554	putative oxidoreductase; Provisional	96.77
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	96.76
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	96.76
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	96.73
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	96.69
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	96.67
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	96.62
PRK02106	560	choline dehydrogenase; Validated	96.61
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	96.61
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	96.61
PRK12839	572	hypothetical protein; Provisional	96.6
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	96.59
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	96.57
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	96.56
PRK06175	433	L-aspartate oxidase; Provisional	96.55
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	96.52
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	96.5
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	96.5
PRK08294	634	phenol 2-monooxygenase; Provisional	96.5
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	96.46
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	96.44
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	96.44
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	96.44
PLN02985	514	squalene monooxygenase	96.44
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	96.38
PLN03000	881	amine oxidase	96.35
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	96.35
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	96.31
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	96.28
PLN02976	1713	amine oxidase	96.26
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	96.22
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	96.2
KOG2852	380	consensus Possible oxidoreductase [General functio	96.16
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	96.16
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	96.14
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	96.14
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	96.12
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	96.11
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	96.11
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	96.05
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	96.05
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	96.04
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	96.04
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	95.99
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.96
PRK07395	553	L-aspartate oxidase; Provisional	95.96
KOG2960	328	consensus Protein involved in thiamine biosynthesi	95.86
PF02852	110	Pyr_redox_dim: Pyridine nucleotide-disulphide oxid	95.84
PRK08071	510	L-aspartate oxidase; Provisional	95.82

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=100.00  E-value=7.7e-58  Score=457.27  Aligned_cols=391  Identities=27%  Similarity=0.428  Sum_probs=335.3

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      .+++|||||||+||++||..|++.++ +.+|+||+++++.+|.+|++++.++........             .....++
T Consensus         2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~-~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~-------------~~~~~~~   67 (396)
T PRK09754          2 KEKTIIIVGGGQAAAMAAASLRQQGF-TGELHLFSDERHLPYERPPLSKSMLLEDSPQLQ-------------QVLPANW   67 (396)
T ss_pred             CcCcEEEECChHHHHHHHHHHHhhCC-CCCEEEeCCCCCCCCCCCCCCHHHHCCCCcccc-------------ccCCHHH
Confidence            45689999999999999999999986 789999999999999999998766543222111             1234678


Q ss_pred             HHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCe
Q 011351          130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKK  209 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~  209 (488)
                      +.+.+++++.++.|..+|++++.+++.+|+++.||+||||||+.++.+| .++...++++++++..++..+.+.+..+++
T Consensus        68 ~~~~~i~~~~g~~V~~id~~~~~v~~~~g~~~~yd~LViATGs~~~~~p-~~~~~~~~v~~~~~~~da~~l~~~~~~~~~  146 (396)
T PRK09754         68 WQENNVHLHSGVTIKTLGRDTRELVLTNGESWHWDQLFIATGAAARPLP-LLDALGERCFTLRHAGDAARLREVLQPERS  146 (396)
T ss_pred             HHHCCCEEEcCCEEEEEECCCCEEEECCCCEEEcCEEEEccCCCCCCCC-CCCcCCCCEEecCCHHHHHHHHHHhhcCCe
Confidence            8899999999888999999999999999999999999999999986543 344456788999999999888887788899


Q ss_pred             EEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC
Q 011351          210 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE  289 (488)
Q Consensus       210 vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~  289 (488)
                      ++|||+|++|+|+|..|.++|.+|+++++.++++++.+++.+.+.+.+.+++.||++++++.+++++.  ++. ..+.+.
T Consensus       147 vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~--~~~-~~v~l~  223 (396)
T PRK09754        147 VVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVD--GEK-VELTLQ  223 (396)
T ss_pred             EEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEc--CCE-EEEEEC
Confidence            99999999999999999999999999999999998778889999999999999999999999999974  233 357788


Q ss_pred             CCcEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHH
Q 011351          290 DGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH  369 (488)
Q Consensus       290 ~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~  369 (488)
                      +|+++++|.||+++|.+|++.+++++++..+ ++|.||++++|+.|||||+|||+..+.. .|...+.++|..|..||+.
T Consensus       224 ~g~~i~aD~Vv~a~G~~pn~~l~~~~gl~~~-~gi~vd~~~~ts~~~IyA~GD~a~~~~~-~g~~~~~~~~~~A~~qg~~  301 (396)
T PRK09754        224 SGETLQADVVIYGIGISANDQLAREANLDTA-NGIVIDEACRTCDPAIFAGGDVAITRLD-NGALHRCESWENANNQAQI  301 (396)
T ss_pred             CCCEEECCEEEECCCCChhhHHHHhcCCCcC-CCEEECCCCccCCCCEEEccceEeeeCC-CCCEEEECcHHHHHHHHHH
Confidence            9999999999999999999888888898775 6799999999999999999999987766 6766678899999999999


Q ss_pred             HHHHHhcCCCCCCCCCCceeEeccccCCCCcceeeEEeeCCCC-cEEEEccCC-CcEEEEEEECCEEEEEEeecCChHHh
Q 011351          370 CIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-ETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEF  447 (488)
Q Consensus       370 ~a~~i~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~-~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~  447 (488)
                      +|+||++. ..++..+||||+++|+..       ++++|.... +.+..++.+ .++..+|+++|+|+|+++ .+++..+
T Consensus       302 aa~ni~g~-~~~~~~~p~~~~~~~~~~-------~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~-~~~~~~~  372 (396)
T PRK09754        302 AAAAMLGL-PLPLLPPPWFWSDQYSDN-------LQFIGDMRGDDWLCRGNPETQKAIWFNLQNGVLIGAVT-LNQGREI  372 (396)
T ss_pred             HHHHhcCC-CCCCCCCCceEEEeCCcc-------EEEeeCCCCCEEEEecCCCCceEEEEEeeCCEEEEEEE-ECCHHHH
Confidence            99999974 467889999999999865       888997544 344556544 457778889999999986 7889999


Q ss_pred             hHHHHHHhcCCCCChhhhcCCC
Q 011351          448 QLLPTLARSQPFVDKAKLQQAS  469 (488)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~~~~  469 (488)
                      ..++++++.+..+++..+.++.
T Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~  394 (396)
T PRK09754        373 RPIRKWIQSGKTFDAKLLIDEN  394 (396)
T ss_pred             HHHHHHHHCCCCCCHHHhcCcc
Confidence            9999999999999988887763

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=100.00  E-value=4.3e-55  Score=416.44  Aligned_cols=401  Identities=45%  Similarity=0.762  Sum_probs=362.3

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (488)
                      .+.++|||+|++|..|+.++++.++ ..+++++..+.++||.||.+++......               +....+..+||
T Consensus        74 ar~fvivGgG~~g~vaie~~r~~g~-~~ri~l~~~~~~~pydr~~Ls~~~~~~~---------------~~~a~r~~e~Y  137 (478)
T KOG1336|consen   74 ARHFVIVGGGPGGAVAIETLRQVGF-TERIALVKREYLLPYDRARLSKFLLTVG---------------EGLAKRTPEFY  137 (478)
T ss_pred             cceEEEEcCCchhhhhHhhHHhhCC-CcceEEEeccccCcccchhcccceeecc---------------ccccccChhhH
Confidence            5789999999999999999999997 7899999999999999998887443322               22245678899


Q ss_pred             HHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeE
Q 011351          131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKV  210 (488)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~v  210 (488)
                      ++.+|++++++.|+.+|.+.+++.+.+|+.+.|++|+||||+.+.. +++||.+.+++.+++++.+++.+.........+
T Consensus       138 ke~gIe~~~~t~v~~~D~~~K~l~~~~Ge~~kys~LilATGs~~~~-l~~pG~~~~nv~~ireieda~~l~~~~~~~~~v  216 (478)
T KOG1336|consen  138 KEKGIELILGTSVVKADLASKTLVLGNGETLKYSKLIIATGSSAKT-LDIPGVELKNVFYLREIEDANRLVAAIQLGGKV  216 (478)
T ss_pred             hhcCceEEEcceeEEeeccccEEEeCCCceeecceEEEeecCcccc-CCCCCccccceeeeccHHHHHHHHHHhccCceE
Confidence            9999999999999999999999999999999999999999998764 667898899999999999999998888888999


Q ss_pred             EEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCC
Q 011351          211 VVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED  290 (488)
Q Consensus       211 vVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~  290 (488)
                      +++|+|++|+|+|..|...+.+||++++.+.++++.+.+.+.+.++++++++||+++.++.+.+++.+++|++..|.+.|
T Consensus       217 V~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~d  296 (478)
T KOG1336|consen  217 VCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKD  296 (478)
T ss_pred             EEECchHHHHHHHHHHHhcCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999988889999999999


Q ss_pred             CcEEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHH
Q 011351          291 GSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH  369 (488)
Q Consensus       291 g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~  369 (488)
                      |++++||+||+++|.+|++.+++. +..++ .|+|.||+.+||++|||||+|||+.+|.+.++...+++|++.|+..|+.
T Consensus       297 g~~l~adlvv~GiG~~p~t~~~~~-g~~~~~~G~i~V~~~f~t~~~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~g~~  375 (478)
T KOG1336|consen  297 GKTLEADLVVVGIGIKPNTSFLEK-GILLDSKGGIKVDEFFQTSVPNVYAIGDVATFPLKGYGEDRRVEHVDHARASGRQ  375 (478)
T ss_pred             CCEeccCeEEEeeccccccccccc-cceecccCCEeehhceeeccCCcccccceeecccccccccccchHHHHHHHHHHh
Confidence            999999999999999999999987 55554 7999999999999999999999999999998887779999999999998


Q ss_pred             HHHHHhcCCCCCCCCCCceeEeccccCCCCcceeeEEeeCCCCcEEEEccCC-CcEEEEEEECCEEEEEEeecCChHHhh
Q 011351          370 CIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQ  448 (488)
Q Consensus       370 ~a~~i~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~  448 (488)
                      +...+.......++++||||+..|+..       |+++|+..++.++.|+.+ .+|..+|++ ++.+++.+..+..+...
T Consensus       376 av~ai~~~~~~~~~~lPyf~t~~f~~~-------~~~~G~g~~~~v~~G~~e~~~f~ay~~k-~~~v~a~~~~g~~~~~~  447 (478)
T KOG1336|consen  376 AVKAIKMAPQDAYDYLPYFYTRFFSLS-------WRFAGDGVGDVVLFGDLEPGSFGAYWIK-GDKVGAVAEGGRDEEVS  447 (478)
T ss_pred             hhhhhhccCcccccccchHHHHHhhhh-------ccccCcCccceeeecccccccceeeEee-ccEEEEEeccCCChHHH
Confidence            777776443334779999999999864       899999988888888887 568999999 88888888788888899


Q ss_pred             HHHHHHhcCCCCChhhhcCCCcHHHHHHH
Q 011351          449 LLPTLARSQPFVDKAKLQQASSVEEALEI  477 (488)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (488)
                      .+..++++++.+...++.++.+.+.++..
T Consensus       448 ~~a~l~~~~~~v~~~~~~~~~~~~~~~~~  476 (478)
T KOG1336|consen  448 QFAKLARQGPEVTSLKLLSKSGDSFWLTI  476 (478)
T ss_pred             HHHHHHhcCCcchhhhhccccchhhHHhh
Confidence            99999999999998888888888888765

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=100.00  E-value=2.5e-48  Score=414.92  Aligned_cols=381  Identities=19%  Similarity=0.321  Sum_probs=306.8

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCC-CCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGM-ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~-~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      +++|||||+|+||+.+|.+|++.+. ++.+||||+++++++|.++.++.. +...  ...++           .....+|
T Consensus         3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~-~~~~--~~~~l-----------~~~~~~~   68 (847)
T PRK14989          3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSY-FSHH--TAEEL-----------SLVREGF   68 (847)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHh-HcCC--CHHHc-----------cCCCHHH
Confidence            4589999999999999999988642 245899999999999999888753 2221  11111           2345788


Q ss_pred             HHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCe
Q 011351          130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKK  209 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~  209 (488)
                      +++.+++++.++.|+.+|++.+.|++.+|+.+.||+||||||+.|. .|+++|.+.++++.++++.+...+.+....+++
T Consensus        69 ~~~~gI~~~~g~~V~~Id~~~~~V~~~~G~~i~yD~LVIATGs~p~-~p~ipG~~~~~v~~~rt~~d~~~l~~~~~~~k~  147 (847)
T PRK14989         69 YEKHGIKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPW-IPPIKGSETQDCFVYRTIEDLNAIEACARRSKR  147 (847)
T ss_pred             HHhCCCEEEcCCEEEEEeCCCcEEEECCCcEEECCEEEECCCCCcC-CCCCCCCCCCCeEEECCHHHHHHHHHHHhcCCe
Confidence            9999999999988999999999999999999999999999999987 466788777889999999999998888888999


Q ss_pred             EEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC
Q 011351          210 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE  289 (488)
Q Consensus       210 vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~  289 (488)
                      ++|||+|++|+|+|..|.++|.+|+++++.++++++.+++...+.+.+.|++.||++++++.++++..++++....+.++
T Consensus       148 vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~  227 (847)
T PRK14989        148 GAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFA  227 (847)
T ss_pred             EEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEEC
Confidence            99999999999999999999999999999999998789999999999999999999999999999975433445578889


Q ss_pred             CCcEEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHH
Q 011351          290 DGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQ  368 (488)
Q Consensus       290 ~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~  368 (488)
                      +|+++++|.||+++|++|++++++++|+..+ +|+|.||++++|+.|||||+|||+.+....++      .+..|..||+
T Consensus       228 dG~~i~~D~Vv~A~G~rPn~~L~~~~Gl~~~~~G~I~VD~~l~Ts~p~IYAiGD~a~~~~~~~g------l~~~a~~~a~  301 (847)
T PRK14989        228 DGSELEVDFIVFSTGIRPQDKLATQCGLAVAPRGGIVINDSCQTSDPDIYAIGECASWNNRVFG------LVAPGYKMAQ  301 (847)
T ss_pred             CCCEEEcCEEEECCCcccCchHHhhcCccCCCCCcEEECCCCcCCCCCEEEeecceeEcCcccc------cHHHHHHHHH
Confidence            9999999999999999999999999999875 57899999999999999999999997654433      5667999999


Q ss_pred             HHHHHHhcCCCCCCCCCCce-eEeccccCCCCcceeeEEeeCCCCc------EEEEccCCCcEEEEEEE--CCEEEEEEe
Q 011351          369 HCIKALLSAQTHTYDYLPYF-YSRVFEYEGSPRKVWWQFFGDNVGE------TIEIGNFDPKIATFWID--SGKLKGVLV  439 (488)
Q Consensus       369 ~~a~~i~~~~~~~~~~~p~~-~~~~~~~~g~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~--~~~~~g~~~  439 (488)
                      .+|.||++.. ..|...... ..+.+++.       +..+|...+.      ..........|.++.++  +++|+|+++
T Consensus       302 vaa~~i~g~~-~~~~g~~~~~~lk~~G~~-------v~s~G~~~~~~~~~~~~~~~~~~~~~y~Klv~~~~~~~LlGa~l  373 (847)
T PRK14989        302 VAVDHLLGSE-NAFEGADLSAKLKLLGVD-------VGGIGDAHGRTPGARSYVYLDESKEIYKRLIVSEDNKTLLGAVL  373 (847)
T ss_pred             HHHHHhcCCC-cCCCCcccceEEEECCcc-------eEecccccCCCCCceeEEEEcCCCCEEEEEEEECCCCEEEEEEE
Confidence            9999999753 334332211 11223221       3344532221      22233334568888875  469999997


Q ss_pred             ecCChHHhhHHHHHHhcCCCCC
Q 011351          440 ESGSPEEFQLLPTLARSQPFVD  461 (488)
Q Consensus       440 ~~~~~~~~~~~~~~~~~~~~~~  461 (488)
                       .|+......+.+++.++..+.
T Consensus       374 -vGd~~~~~~l~~~~~~~~~l~  394 (847)
T PRK14989        374 -VGDTSDYGNLLQLVLNAIELP  394 (847)
T ss_pred             -ECCHHHHHHHHHHHHcCCCCc
Confidence             677778888888887776554

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=100.00  E-value=2.8e-48  Score=415.63  Aligned_cols=377  Identities=21%  Similarity=0.355  Sum_probs=310.6

Q ss_pred             EEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHHHC
Q 011351           54 FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEK  133 (488)
Q Consensus        54 vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (488)
                      |||||||+||+++|.+|++.+..+.+||||+++++++|.++.++. ++... ....++           .....+|+++.
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~-~l~g~-~~~~~l-----------~~~~~~~~~~~   67 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSS-VLQGE-ADLDDI-----------TLNSKDWYEKH   67 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccH-HHCCC-CCHHHc-----------cCCCHHHHHHC
Confidence            699999999999999999976435699999999999999988876 33321 111111           23467889999


Q ss_pred             CCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEE
Q 011351          134 GIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVV  213 (488)
Q Consensus       134 ~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVv  213 (488)
                      +++++++++|+.||+++++|++.+|+++.||+||||||+.++ .|+++|.+.++++.++++.+++.+.+....+++++||
T Consensus        68 gv~~~~g~~V~~Id~~~k~V~~~~g~~~~yD~LVlATGs~p~-~p~ipG~~~~~v~~~rt~~d~~~i~~~~~~~k~vvVV  146 (785)
T TIGR02374        68 GITLYTGETVIQIDTDQKQVITDAGRTLSYDKLILATGSYPF-ILPIPGADKKGVYVFRTIEDLDAIMAMAQRFKKAAVI  146 (785)
T ss_pred             CCEEEcCCeEEEEECCCCEEEECCCcEeeCCEEEECCCCCcC-CCCCCCCCCCCEEEeCCHHHHHHHHHHhhcCCeEEEE
Confidence            999999989999999999999999999999999999999987 4667888788999999999999988888889999999


Q ss_pred             CCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcE
Q 011351          214 GGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST  293 (488)
Q Consensus       214 G~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~  293 (488)
                      |+|++|+|+|..|+++|.+|+++++.++++++.+++.....+.+.+++.||++++++.++++..  ++.+..+.++||++
T Consensus       147 GgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~--~~~~~~v~~~dG~~  224 (785)
T TIGR02374       147 GGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVG--ATKADRIRFKDGSS  224 (785)
T ss_pred             CCCHHHHHHHHHHHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEEc--CCceEEEEECCCCE
Confidence            9999999999999999999999999999998888999999999999999999999999999974  34556788999999


Q ss_pred             EEcCEEEEeecCccCChhhhhcCCcccCCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHH
Q 011351          294 IDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKA  373 (488)
Q Consensus       294 i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~  373 (488)
                      +++|.||+++|++|+.+++++++++.+ |+|.||++++|+.|||||+|||+..+...++      .+..|..||+.+|.|
T Consensus       225 i~~D~Vi~a~G~~Pn~~la~~~gl~~~-ggI~Vd~~~~Ts~p~IyA~GD~a~~~~~~~g------l~~~a~~qa~vaA~n  297 (785)
T TIGR02374       225 LEADLIVMAAGIRPNDELAVSAGIKVN-RGIIVNDSMQTSDPDIYAVGECAEHNGRVYG------LVAPLYEQAKVLADH  297 (785)
T ss_pred             EEcCEEEECCCCCcCcHHHHhcCCccC-CCEEECCCcccCCCCEEEeeecceeCCcccc------cHHHHHHHHHHHHHH
Confidence            999999999999999999999999886 7899999999999999999999997665433      566789999999999


Q ss_pred             HhcCCCCCCCCCCcee-EeccccCCCCcceeeEEeeCCCC-----cEEEEccCCCcEEEEEEECCEEEEEEeecCChHHh
Q 011351          374 LLSAQTHTYDYLPYFY-SRVFEYEGSPRKVWWQFFGDNVG-----ETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEF  447 (488)
Q Consensus       374 i~~~~~~~~~~~p~~~-~~~~~~~g~~~~~~~~~~g~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  447 (488)
                      |++....+|...+... .+.+++.       +..+|....     .+......+..|.++++++|+|+|+++ .++....
T Consensus       298 i~g~~~~~~~~~~~~~~lk~~g~~-------v~s~G~~~~~~~~~~~~~~d~~~~~y~kl~~~~~rLlGavl-vgd~~~~  369 (785)
T TIGR02374       298 ICGVECEEYEGSDLSAKLKLLGVD-------VWSAGDAQETERTTSIKIYDEQKGIYKKLVLSDDKLLGAVL-FGDTSDY  369 (785)
T ss_pred             hcCCCCcCCCCCccceEEEECCcc-------eEecccCCCCCCcEEEEEEcCCCCEEEEEEEECCEEEEEEE-ECCHHHH
Confidence            9975434555544321 1233321       334454221     122222233558899999999999997 7788899


Q ss_pred             hHHHHHHhcCCCCC
Q 011351          448 QLLPTLARSQPFVD  461 (488)
Q Consensus       448 ~~~~~~~~~~~~~~  461 (488)
                      ..++++++++..++
T Consensus       370 ~~L~~li~~~~~l~  383 (785)
T TIGR02374       370 GRLLDMVLKQADIS  383 (785)
T ss_pred             HHHHHHHHcCCCCC
Confidence            99999998876554

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=100.00  E-value=8.8e-48  Score=382.68  Aligned_cols=362  Identities=23%  Similarity=0.361  Sum_probs=286.6

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (488)
                      +++|||||||+||+++|..|++.+. +.+||||+++++.+|.+|.++..+. . ...+.++.          .....+++
T Consensus         2 ~~~vvIiG~G~AG~~~a~~lr~~~~-~~~Itvi~~~~~~~y~~~~l~~~~~-~-~~~~~~~~----------~~~~~~~~   68 (377)
T PRK04965          2 SNGIVIIGSGFAARQLVKNIRKQDA-HIPITLITADSGDEYNKPDLSHVFS-Q-GQRADDLT----------RQSAGEFA   68 (377)
T ss_pred             CCCEEEECCcHHHHHHHHHHHhhCc-CCCEEEEeCCCCCCcCcCcCcHHHh-C-CCCHHHhh----------cCCHHHHH
Confidence            4689999999999999999999875 7899999999999999998765322 1 22221110          11245677


Q ss_pred             HHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeE
Q 011351          131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKV  210 (488)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~v  210 (488)
                      ++++++++.+++|+++|++++.+++ ++..+.||+||||||+.+. .|+++|...  ++.++++.++..+...+..++++
T Consensus        69 ~~~gv~~~~~~~V~~id~~~~~v~~-~~~~~~yd~LVlATG~~~~-~p~i~G~~~--v~~~~~~~~~~~~~~~~~~~~~v  144 (377)
T PRK04965         69 EQFNLRLFPHTWVTDIDAEAQVVKS-QGNQWQYDKLVLATGASAF-VPPIPGREL--MLTLNSQQEYRAAETQLRDAQRV  144 (377)
T ss_pred             HhCCCEEECCCEEEEEECCCCEEEE-CCeEEeCCEEEECCCCCCC-CCCCCCCce--EEEECCHHHHHHHHHHhhcCCeE
Confidence            8899999988899999999888886 5667999999999999986 455666432  77888888888887777788999


Q ss_pred             EEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCC
Q 011351          211 VVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED  290 (488)
Q Consensus       211 vVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~  290 (488)
                      +|||+|++|+|+|..|.+.+.+|+++++.++++++.+++.+...+++.+++.||++++++++++++.+ ++. ..+.+.+
T Consensus       145 vViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~~-~~v~~~~  222 (377)
T PRK04965        145 LVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKT-DSG-IRATLDS  222 (377)
T ss_pred             EEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEcc-CCE-EEEEEcC
Confidence            99999999999999999999999999999999987788899999999999999999999999999854 222 3577889


Q ss_pred             CcEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHH
Q 011351          291 GSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHC  370 (488)
Q Consensus       291 g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~  370 (488)
                      |++++||.||+|+|.+|+.++++.+|+..++ ++.||++++|+.|||||+|||+..+...      ...+..|.+||+.+
T Consensus       223 g~~i~~D~vI~a~G~~p~~~l~~~~gl~~~~-gi~vd~~l~ts~~~VyA~GD~a~~~~~~------~~~~~~a~~~g~~~  295 (377)
T PRK04965        223 GRSIEVDAVIAAAGLRPNTALARRAGLAVNR-GIVVDSYLQTSAPDIYALGDCAEINGQV------LPFLQPIQLSAMAL  295 (377)
T ss_pred             CcEEECCEEEECcCCCcchHHHHHCCCCcCC-CEEECCCcccCCCCEEEeeecEeECCce------eehHHHHHHHHHHH
Confidence            9999999999999999999999999998875 5999999999999999999999875432      23566789999999


Q ss_pred             HHHHhcCCCCCCCCCCceeE-eccccCCCCcceeeEEeeCCCC---cEEEEccCCCcEEEEEEECCEEEEEEeecCChHH
Q 011351          371 IKALLSAQTHTYDYLPYFYS-RVFEYEGSPRKVWWQFFGDNVG---ETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEE  446 (488)
Q Consensus       371 a~~i~~~~~~~~~~~p~~~~-~~~~~~g~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  446 (488)
                      |+||++.. ..|...+...+ +.++++       +.++|...+   ......+.+..|.++++++|+|+|++++++....
T Consensus       296 a~n~~g~~-~~~~~~~~~~~~~~~~~~-------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~g~~~~~  367 (377)
T PRK04965        296 AKNLLGQN-TPLKLPAMLVKVKTPELP-------LQLAGETQRQDLRWQINAESQGMVAKGVDEAGQLRAFVVSEDRMKE  367 (377)
T ss_pred             HHHhcCCC-cccccCCccEEEecCcee-------eEECCCCCCCCceEEEEeCCCCeEEEEEccCCcEEEEEEEChhHHH
Confidence            99999744 45655443222 344432       566676543   1222222235578889999999999985554443

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=100.00  E-value=3.7e-48  Score=385.00  Aligned_cols=381  Identities=22%  Similarity=0.367  Sum_probs=324.9

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      .+.++||||.|+||..+..++.+......+||++..+++..|+|..++. ++.+... ..++           .....+|
T Consensus         2 ~k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~-vl~~~~~-~edi-----------~l~~~dw   68 (793)
T COG1251           2 KKQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSS-VLAGEKT-AEDI-----------SLNRNDW   68 (793)
T ss_pred             CceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeecc-ccCCCcc-HHHH-----------hccchhh
Confidence            3578999999999999999999965445699999999999999999986 4433222 1111           2456799


Q ss_pred             HHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCe
Q 011351          130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKK  209 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~  209 (488)
                      |++++++++.+..|+.||++++.|+++.|.++.||+||+||||.|+. +++||.+.++++.+++..|...+....+..++
T Consensus        69 y~~~~i~L~~~~~v~~idr~~k~V~t~~g~~~~YDkLilATGS~pfi-~PiPG~~~~~v~~~R~i~D~~am~~~ar~~~~  147 (793)
T COG1251          69 YEENGITLYTGEKVIQIDRANKVVTTDAGRTVSYDKLIIATGSYPFI-LPIPGSDLPGVFVYRTIDDVEAMLDCARNKKK  147 (793)
T ss_pred             HHHcCcEEEcCCeeEEeccCcceEEccCCcEeecceeEEecCccccc-cCCCCCCCCCeeEEecHHHHHHHHHHHhccCC
Confidence            99999999999999999999999999999999999999999999985 45899999999999999999998888666777


Q ss_pred             EEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC
Q 011351          210 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE  289 (488)
Q Consensus       210 vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~  289 (488)
                      .+|||+|..|+|.|..|...|.++++++..+.++.+++++.....+++.+++.|++++++...+++..  .+++..+.++
T Consensus       148 avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g--~~~~~~vr~~  225 (793)
T COG1251         148 AVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVG--EDKVEGVRFA  225 (793)
T ss_pred             cEEEccchhhhHHHHHHHhCCCceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeecccchhhhhc--CcceeeEeec
Confidence            89999999999999999999999999999999999999999999999999999999999998888873  6677899999


Q ss_pred             CCcEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHH
Q 011351          290 DGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH  369 (488)
Q Consensus       290 ~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~  369 (488)
                      ||+.+++|.||+++|++||.++...+|+..++ +|+||++|+|+.|+|||+|+|+.+....+|.      +.-+.+|++.
T Consensus       226 DG~~i~ad~VV~a~GIrPn~ela~~aGlavnr-GIvvnd~mqTsdpdIYAvGEcae~~g~~yGL------VaP~yeq~~v  298 (793)
T COG1251         226 DGTEIPADLVVMAVGIRPNDELAKEAGLAVNR-GIVVNDYMQTSDPDIYAVGECAEHRGKVYGL------VAPLYEQAKV  298 (793)
T ss_pred             CCCcccceeEEEecccccccHhHHhcCcCcCC-CeeecccccccCCCeeehhhHHHhcCcccee------hhHHHHHHHH
Confidence            99999999999999999999999999999986 9999999999999999999999988777664      4458899999


Q ss_pred             HHHHHhcCCCCCCCC-CCceeEeccccCCCCcceeeEEeeCCC-----CcEEEEccCCCcEEEEEEECCEEEEEEeecCC
Q 011351          370 CIKALLSAQTHTYDY-LPYFYSRVFEYEGSPRKVWWQFFGDNV-----GETIEIGNFDPKIATFWIDSGKLKGVLVESGS  443 (488)
Q Consensus       370 ~a~~i~~~~~~~~~~-~p~~~~~~~~~~g~~~~~~~~~~g~~~-----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  443 (488)
                      +|.++++.....|.. .++   ......|..    +...|+..     ..+++.......|.++.+++|+|+|++| .|+
T Consensus       299 ~a~hl~~~~~~~y~gsv~s---tkLKv~Gvd----l~S~GD~~e~~~~~~iv~~D~~~~iYKrlvL~dd~IvgavL-~GD  370 (793)
T COG1251         299 LADHLCGGEAEAYEGSVTS---TKLKVSGVD----VFSAGDFQETEGAESIVFRDEQRGIYKKLVLKDDKIVGAVL-YGD  370 (793)
T ss_pred             HHHHhccCcccccccccch---hhhcccccc----eeeccchhhcCCCceEEEecccccceeEEEEeCCeEEEEEE-Eee
Confidence            999999865544433 332   333444432    33445432     1345555556779999999999999997 899


Q ss_pred             hHHhhHHHHHHhcCCCCC
Q 011351          444 PEEFQLLPTLARSQPFVD  461 (488)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~  461 (488)
                      ..+-..|..|+.++..++
T Consensus       371 t~d~~~l~~li~~~~~~s  388 (793)
T COG1251         371 TSDGGWLLDLILKGADIS  388 (793)
T ss_pred             cccchHHHHHHhcCCCcc
Confidence            999999999998888776

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=100.00  E-value=6.7e-46  Score=375.18  Aligned_cols=391  Identities=20%  Similarity=0.291  Sum_probs=284.1

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHH
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYK  131 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (488)
                      ++|||||||+||++||.+|++.+. +.+|+|||+++++.|.++.++. ++...........          .....++++
T Consensus         2 ~~VVIIGgG~aG~~aA~~l~~~~~-~~~I~li~~~~~~~~~~~~lp~-~~~~~~~~~~~~~----------~~~~~~~~~   69 (438)
T PRK13512          2 PKIIVVGAVAGGATCASQIRRLDK-ESDIIIFEKDRDMSFANCALPY-YIGEVVEDRKYAL----------AYTPEKFYD   69 (438)
T ss_pred             CeEEEECCcHHHHHHHHHHHhhCC-CCCEEEEECCCCcccccCCcch-hhcCccCCHHHcc----------cCCHHHHHH
Confidence            489999999999999999998764 6799999999998888665543 1111000000000          011234557


Q ss_pred             HCCCeEEeCCcEEEEeCCCcEEEeCCC---c--EEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhh-
Q 011351          132 EKGIEMIYQDPVTSIDIEKQTLITNSG---K--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE-  205 (488)
Q Consensus       132 ~~~i~~~~~~~v~~id~~~~~v~~~~g---~--~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~-  205 (488)
                      +.+++++.+++|++||+++++|++.++   +  ++.||+||||||+.+.. |..   +.+++++++++.+...+.+.+. 
T Consensus        70 ~~~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~-~~~---~~~~~~~~~~~~~~~~l~~~l~~  145 (438)
T PRK13512         70 RKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANS-LGF---ESDITFTLRNLEDTDAIDQFIKA  145 (438)
T ss_pred             hCCCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCC-CCC---CCCCeEEecCHHHHHHHHHHHhh
Confidence            789999988999999999999888653   2  47899999999999864 332   2467788888888877776543 


Q ss_pred             -cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEE
Q 011351          206 -KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA  284 (488)
Q Consensus       206 -~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~  284 (488)
                       .+++++|||+|.+|+|+|..|+++|.+|+++++.+++++ .+++++.+.+.+.|++.||++++++++++++..      
T Consensus       146 ~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~-~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~------  218 (438)
T PRK13512        146 NQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINK-LMDADMNQPILDELDKREIPYRLNEEIDAINGN------  218 (438)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccch-hcCHHHHHHHHHHHHhcCCEEEECCeEEEEeCC------
Confidence             468999999999999999999999999999999998886 479999999999999999999999999999731      


Q ss_pred             EEEeCCCcEEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHH
Q 011351          285 AVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHA  363 (488)
Q Consensus       285 ~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A  363 (488)
                      .+.+++|+++++|.|++++|++|+++++++.|+..+ +|+|.||+++||+.|||||+|||+..+....+..........|
T Consensus       219 ~v~~~~g~~~~~D~vl~a~G~~pn~~~l~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A  298 (438)
T PRK13512        219 EVTFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDDKGFIPVNDKFETNVPNIYAIGDIITSHYRHVDLPASVPLAWGA  298 (438)
T ss_pred             EEEECCCCEEEeCEEEECcCCCcChHHHHhcCcccCCCCcEEECCCcccCCCCEEEeeeeEEeeeccCCCceecccchHH
Confidence            467788889999999999999999999999998875 5779999999999999999999997543322222222344558


Q ss_pred             HHHHHHHHHHHhcCCCCCC-CCCCceeEeccccCCCCcceeeEEeeCCCCc-------EEEE---------ccCCCcEEE
Q 011351          364 RQSAQHCIKALLSAQTHTY-DYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TIEI---------GNFDPKIAT  426 (488)
Q Consensus       364 ~~~g~~~a~~i~~~~~~~~-~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~-------~~~~---------~~~~~~~~~  426 (488)
                      .++|+.+|+||++....++ ...+..+...++..       +..+|....+       ....         ......+.+
T Consensus       299 ~~~a~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~-------ia~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~k  371 (438)
T PRK13512        299 HRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYT-------FASVGVKPNELKQFDYKMVEVTQGAHANYYPGNSPLHLR  371 (438)
T ss_pred             HHHHHHHHHHhcCCCccccCCcccceEEEEcCce-------EEeecCCHHHHccCCcEEEEEecCCcCCCcCCCceEEEE
Confidence            8999999999987432223 22222223333321       2233332210       0000         011234677


Q ss_pred             EEEE--CCEEEEEEeecCC-hHHhh-HHHHHHhcCCCCC-hhh--hcCCCcHH
Q 011351          427 FWID--SGKLKGVLVESGS-PEEFQ-LLPTLARSQPFVD-KAK--LQQASSVE  472 (488)
Q Consensus       427 ~~~~--~~~~~g~~~~~~~-~~~~~-~~~~~~~~~~~~~-~~~--~~~~~~~~  472 (488)
                      ++++  +++|+|+++++.+ +.++. .+..+++.+.+++ ...  +..||+++
T Consensus       372 lv~d~~~~~ilGa~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~P~~~  424 (438)
T PRK13512        372 VYYDTSNRKILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEFEVAYAPPYS  424 (438)
T ss_pred             EEEECCCCeEEEEEEEccccHHHHHHHHHHHHHcCCcHHHHhhcccccCCCCC
Confidence            7663  5999999987765 56555 4455678888776 222  46667665

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=100.00  E-value=1.3e-45  Score=375.64  Aligned_cols=398  Identities=21%  Similarity=0.293  Sum_probs=292.5

Q ss_pred             eEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHHH
Q 011351           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKE  132 (488)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (488)
                      +|||||||+||+++|..|++.+. +.+|+|||+++.+.|..+.++. +.......+..+           .....+++++
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~~-~~~Vtli~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----------~~~~~~~~~~   68 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLNK-ELEITVYEKTDIVSFGACGLPY-FVGGFFDDPNTM-----------IARTPEEFIK   68 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHCC-CCcEEEEECCCcceeecCCCce-EeccccCCHHHh-----------hcCCHHHHHH
Confidence            79999999999999999999864 6699999999988776544432 221111111111           1345677888


Q ss_pred             CCCeEEeCCcEEEEeCCCcEEEeCC---CcEEE--eccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhh--
Q 011351          133 KGIEMIYQDPVTSIDIEKQTLITNS---GKLLK--YGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE--  205 (488)
Q Consensus       133 ~~i~~~~~~~v~~id~~~~~v~~~~---g~~i~--yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~--  205 (488)
                      .+++++.+++|+.+|++++.+++.+   +..+.  ||+||||||+.+. .|+.+|.+.++++++++..+..++.+.+.  
T Consensus        69 ~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~-~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~  147 (444)
T PRK09564         69 SGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPI-IPPIKNINLENVYTLKSMEDGLALKELLKDE  147 (444)
T ss_pred             CCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCC-CCCCCCcCCCCEEEECCHHHHHHHHHHHhhc
Confidence            9999998889999999998888764   55666  9999999999986 45667766678888888887777766553  


Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEE
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  285 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~  285 (488)
                      .+++++|+|+|.+|+|+|..+.+.|.+|+++++.+++++..+++++.+.+.+.+++.||++++++++++++.  ++.+..
T Consensus       148 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~--~~~~~~  225 (444)
T PRK09564        148 EIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIG--EDKVEG  225 (444)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEec--CCcEEE
Confidence            468999999999999999999999999999999998887668999999999999999999999999999963  344444


Q ss_pred             EEeCCCcEEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHH
Q 011351          286 VKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHAR  364 (488)
Q Consensus       286 v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~  364 (488)
                      +.+++ .++++|.+++|+|.+|+.++++++|++.+ +|+|.||++++|+.|||||+|||+..+....+.......+..|.
T Consensus       226 v~~~~-~~i~~d~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~  304 (444)
T PRK09564        226 VVTDK-GEYEADVVIVATGVKPNTEFLEDTGLKTLKNGAIIVDEYGETSIENIYAAGDCATIYNIVSNKNVYVPLATTAN  304 (444)
T ss_pred             EEeCC-CEEEcCEEEECcCCCcCHHHHHhcCccccCCCCEEECCCcccCCCCEEEeeeEEEEEeccCCCeeeccchHHHH
Confidence            55544 47999999999999999999999998764 67899999999999999999999987655444333345677899


Q ss_pred             HHHHHHHHHHhcCCCCCCC-CCCceeEeccccCCCCcceeeEEeeCCCCc---------EEEE---------ccCCCcEE
Q 011351          365 QSAQHCIKALLSAQTHTYD-YLPYFYSRVFEYEGSPRKVWWQFFGDNVGE---------TIEI---------GNFDPKIA  425 (488)
Q Consensus       365 ~~g~~~a~~i~~~~~~~~~-~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~---------~~~~---------~~~~~~~~  425 (488)
                      +||+.+|+||++... .+. ..+......+++.       +..+|....+         ....         .+....|.
T Consensus       305 ~qg~~~a~ni~g~~~-~~~~~~~~~~~~~~~~~-------~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  376 (444)
T PRK09564        305 KLGRMVGENLAGRHV-SFKGTLGSACIKVLDLE-------AARTGLTEEEAKKLGIDYKTVFIKDKNHTNYYPGQEDLYV  376 (444)
T ss_pred             HHHHHHHHHhcCCCC-CCCCcccceEEEECCEE-------EEEecCCHHHHHHCCCCeEEEEEecCCCCCcCCCCceEEE
Confidence            999999999997432 221 1111111122221       3334432110         0000         11123467


Q ss_pred             EEEE--ECCEEEEEEeecCC-hHH-hhHHHHHHhcCCCCCh-hh-hcC-CCcHHHHH
Q 011351          426 TFWI--DSGKLKGVLVESGS-PEE-FQLLPTLARSQPFVDK-AK-LQQ-ASSVEEAL  475 (488)
Q Consensus       426 ~~~~--~~~~~~g~~~~~~~-~~~-~~~~~~~~~~~~~~~~-~~-~~~-~~~~~~~~  475 (488)
                      |+.+  ++++|+|+++++.+ ..+ ...+..+|+++.+++. .. ... +|+++|+.
T Consensus       377 klv~~~~~~~ilG~~~~g~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~  433 (444)
T PRK09564        377 KLIYEADTKVILGGQIIGKKGAVLRIDALAVAIYAKLTTQELGMMDFCYAPPFARTW  433 (444)
T ss_pred             EEEEECCCCeEEeEEEEcCccHHHHHHHHHHHHHCCCCHHHHhhcccccCCCCCCCc
Confidence            7766  46999999986654 544 4455667888888763 22 233 37776554

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=100.00  E-value=3.3e-43  Score=348.18  Aligned_cols=396  Identities=23%  Similarity=0.339  Sum_probs=280.1

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC----CCCCCccccCCC-----------------CCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE----RPALTKGYLFPL-----------------DKK  107 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~----~~~l~~~~~~~~-----------------~~~  107 (488)
                      ++++|+||||+|+||..||..+++.|.   ++.+||+.......    -+--+|.++...                 ...
T Consensus         2 ~~~yDvvVIG~GpaG~~aA~raa~~G~---kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~   78 (454)
T COG1249           2 MKEYDVVVIGAGPAGYVAAIRAAQLGL---KVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVP   78 (454)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCC---CEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCC
Confidence            457999999999999999999999998   49999999522110    000111111000                 000


Q ss_pred             CCCCCCccc---ccCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCC--CcEEEeccEEeccCCCCCcCCCCCC
Q 011351          108 PARLPGFHT---CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNS--GKLLKYGSLIVATGCTASRFPEKIG  182 (488)
Q Consensus       108 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~--g~~i~yd~lVlAtG~~~~~~~~~~g  182 (488)
                      ..++..+..   ............+++.++++++.+ ...=++  .++|.+.+  .+++.++++|||||++|.. |+.++
T Consensus        79 ~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G-~a~f~~--~~~v~V~~~~~~~~~a~~iiIATGS~p~~-~~~~~  154 (454)
T COG1249          79 KIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRG-EARFVD--PHTVEVTGEDKETITADNIIIATGSRPRI-PPGPG  154 (454)
T ss_pred             CcCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEE-EEEECC--CCEEEEcCCCceEEEeCEEEEcCCCCCcC-CCCCC
Confidence            000000000   000001112233455669999886 333233  56777766  4789999999999999975 44344


Q ss_pred             CCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHc
Q 011351          183 GYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN  262 (488)
Q Consensus       183 ~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~  262 (488)
                      .+...+.+      .+........+++++|||+|.+|+|+|..+.++|.+||++++.+++++. +|+++++.+.+.|++.
T Consensus       155 ~~~~~~~~------s~~~l~~~~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~-~D~ei~~~~~~~l~~~  227 (454)
T COG1249         155 IDGARILD------SSDALFLLELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG-EDPEISKELTKQLEKG  227 (454)
T ss_pred             CCCCeEEe------chhhcccccCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCc-CCHHHHHHHHHHHHhC
Confidence            32222222      2222222367999999999999999999999999999999999999995 8999999999999999


Q ss_pred             CcEEEcCCeEEEEEeCCCCcEEEEEeCCCc--EEEcCEEEEeecCccCCh--hhhhcCCcccC-CCEEeCCCCCCCCCCE
Q 011351          263 GVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVS--PFERVGLNSSV-GGIQVDGQFRTRMPGI  337 (488)
Q Consensus       263 GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~--~i~~D~vi~a~G~~p~~~--~~~~~gl~~~~-g~i~vd~~~~t~~~~I  337 (488)
                      |+++++++.+++++..+++  ..+.+++|+  ++++|.|++|+|++||++  -+++.|++.++ |+|.||.+++|++|||
T Consensus       228 gv~i~~~~~v~~~~~~~~~--v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~Tnvp~I  305 (454)
T COG1249         228 GVKILLNTKVTAVEKKDDG--VLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTTNVPGI  305 (454)
T ss_pred             CeEEEccceEEEEEecCCe--EEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeCCccccCCCCE
Confidence            9999999999999865444  467888876  799999999999999998  38999999874 8999998888899999


Q ss_pred             EEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC--CCCCCCCceeEeccccCCCCcceeeEEeeCCCCcE-
Q 011351          338 FAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGET-  414 (488)
Q Consensus       338 fa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~~-  414 (488)
                      ||+|||+..+.          ....|..+|+.+|+|+++...  ..+..+|+   ..|..+-      +.++|....+. 
T Consensus       306 yA~GDV~~~~~----------Lah~A~~eg~iaa~~i~g~~~~~~d~~~iP~---~ift~Pe------ia~VGlte~ea~  366 (454)
T COG1249         306 YAIGDVIGGPM----------LAHVAMAEGRIAAENIAGGKRTPIDYRLIPS---VVFTDPE------IASVGLTEEEAK  366 (454)
T ss_pred             EEeeccCCCcc----------cHhHHHHHHHHHHHHHhCCCCCcCcccCCCE---EEECCCc------ceeeeCCHHHHH
Confidence            99999988654          234589999999999997222  24667887   3444432      33455432210 


Q ss_pred             -----EEEc--c-----------CCCcEEEEEEE--CCEEEEEEeecCChHHhhHHHHH-HhcCCCCCh-h-hhcCCCcH
Q 011351          415 -----IEIG--N-----------FDPKIATFWID--SGKLKGVLVESGSPEEFQLLPTL-ARSQPFVDK-A-KLQQASSV  471 (488)
Q Consensus       415 -----~~~~--~-----------~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~  471 (488)
                           +..+  .           ....+.|+.++  +++|+|+++++.+++++...-.+ ++.+.+.+. . .++.|||+
T Consensus       367 ~~g~~~~~~~~~f~~~~ra~~~~~~~G~~Klv~d~~t~~IlGahivg~~A~ElI~~~~~a~~~g~t~~~~~~~i~~HPT~  446 (454)
T COG1249         367 EAGIDYKVGKFPFAANGRAITMGETDGFVKLVVDKETGRILGAHIVGPGASELINEIALAIEMGATAEDLALTIHAHPTL  446 (454)
T ss_pred             hcCCceEEEEeecccchhHHhccCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCCCCCCCh
Confidence                 1111  0           12457888775  48999999999999998877665 577775553 3 46999999


Q ss_pred             HHHHHHHH
Q 011351          472 EEALEIAR  479 (488)
Q Consensus       472 ~~~~~~~~  479 (488)
                      +|++.+++
T Consensus       447 sE~~~~a~  454 (454)
T COG1249         447 SEALKEAA  454 (454)
T ss_pred             HHHHHHhC
Confidence            99999874

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=100.00  E-value=1e-43  Score=342.77  Aligned_cols=308  Identities=23%  Similarity=0.339  Sum_probs=244.0

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      ++++|||||||++|+.+|..|.+.. ++.+||+||+.+++.|. |.+..-.....+.....             ..+...
T Consensus         2 ~~~~iVIlGgGfgGl~~a~~l~~~~-~~~~itLVd~~~~hl~~-plL~eva~g~l~~~~i~-------------~p~~~~   66 (405)
T COG1252           2 MKKRIVILGGGFGGLSAAKRLARKL-PDVEITLVDRRDYHLFT-PLLYEVATGTLSESEIA-------------IPLRAL   66 (405)
T ss_pred             CCceEEEECCcHHHHHHHHHhhhcC-CCCcEEEEeCCCccccc-hhhhhhhcCCCChhhee-------------ccHHHH
Confidence            4689999999999999999999985 35689999999999887 55543211111111111             234555


Q ss_pred             HHHCC-CeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhh---
Q 011351          130 YKEKG-IEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE---  205 (488)
Q Consensus       130 ~~~~~-i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~---  205 (488)
                      +++.+ +++.. .+|++||+++++|++.++..+.||+||+|+|+.+.. ...+|. .+..+.+++++++.+++..+.   
T Consensus        67 ~~~~~~v~~~~-~~V~~ID~~~k~V~~~~~~~i~YD~LVvalGs~~~~-fgi~G~-~E~a~~lks~edA~~ir~~l~~~f  143 (405)
T COG1252          67 LRKSGNVQFVQ-GEVTDIDRDAKKVTLADLGEISYDYLVVALGSETNY-FGIPGA-AEYAFGLKTLEDALRLRRHLLEAF  143 (405)
T ss_pred             hcccCceEEEE-EEEEEEcccCCEEEeCCCccccccEEEEecCCcCCc-CCCCCH-HHhCCCCCCHHHHHHHHHHHHHHH
Confidence            66444 99988 599999999999999998889999999999999874 444553 344567888899877666542   


Q ss_pred             -----cC-----CeEEEECCCHHHHHHHHHHHhCC-------------CcEEEEecCCcCcccccCHHHHHHHHHHHHHc
Q 011351          206 -----KA-----KKVVVVGGGYIGMEVAAAAVGWK-------------LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN  262 (488)
Q Consensus       206 -----~~-----~~vvVvG~G~~g~e~A~~l~~~g-------------~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~  262 (488)
                           ..     .+++|+|||++|+|+|.+|.++-             .+|+++++.+++++. ++++++++.++.|+++
T Consensus       144 e~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~-~~~~l~~~a~~~L~~~  222 (405)
T COG1252         144 EKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPM-FPPKLSKYAERALEKL  222 (405)
T ss_pred             HHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccC-CCHHHHHHHHHHHHHC
Confidence                 11     26999999999999999987542             389999999999985 8999999999999999


Q ss_pred             CcEEEcCCeEEEEEeCCCCcEEEEEeCCCcE-EEcCEEEEeecCccCChhhhh-cCCccc-CCCEEeCCCCCC-CCCCEE
Q 011351          263 GVKFVKGASIKNLEAGSDGRVAAVKLEDGST-IDADTIVIGIGAKPTVSPFER-VGLNSS-VGGIQVDGQFRT-RMPGIF  338 (488)
Q Consensus       263 GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~-i~~D~vi~a~G~~p~~~~~~~-~gl~~~-~g~i~vd~~~~t-~~~~If  338 (488)
                      ||++++++.|++++++      .|++++|++ |++|.+||++|.+++ +++++ .+++.+ .|++.||+++++ ++||||
T Consensus       223 GV~v~l~~~Vt~v~~~------~v~~~~g~~~I~~~tvvWaaGv~a~-~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IF  295 (405)
T COG1252         223 GVEVLLGTPVTEVTPD------GVTLKDGEEEIPADTVVWAAGVRAS-PLLKDLSGLETDRRGRLVVNPTLQVPGHPDIF  295 (405)
T ss_pred             CCEEEcCCceEEECCC------cEEEccCCeeEecCEEEEcCCCcCC-hhhhhcChhhhccCCCEEeCCCcccCCCCCeE
Confidence            9999999999999864      688888884 999999999999998 77888 477766 588999999998 899999


Q ss_pred             EEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCCCCce
Q 011351          339 AIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYF  388 (488)
Q Consensus       339 a~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~~~~~~p~~  388 (488)
                      |+|||+.++..   + ..+...+.|.+||+.+|+||..... ..+..||.
T Consensus       296 a~GD~A~~~~~---~-p~P~tAQ~A~Qqg~~~a~ni~~~l~-g~~l~~f~  340 (405)
T COG1252         296 AAGDCAAVIDP---R-PVPPTAQAAHQQGEYAAKNIKARLK-GKPLKPFK  340 (405)
T ss_pred             EEeccccCCCC---C-CCCChhHHHHHHHHHHHHHHHHHhc-CCCCCCCc
Confidence            99999998764   1 1133667899999999999975322 23445553

>PRK06370 mercuric reductase; Validated

Probab=100.00  E-value=1.1e-42  Score=355.00  Aligned_cols=403  Identities=18%  Similarity=0.270  Sum_probs=274.4

Q ss_pred             CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC--CCCCC-Ccccc--------------CCCC---CC
Q 011351           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY--ERPAL-TKGYL--------------FPLD---KK  107 (488)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~--~~~~l-~~~~~--------------~~~~---~~  107 (488)
                      ++.++||+||||||||++||..|++.|.   +|+|||++....-  .+... ++.++              +...   ..
T Consensus         2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~---~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~   78 (463)
T PRK06370          2 PAQRYDAIVIGAGQAGPPLAARAAGLGM---KVALIERGLLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPV   78 (463)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCC---eEEEEecCccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccC
Confidence            4557999999999999999999999987   8999998642110  00000 11000              0000   00


Q ss_pred             CCCCCCcccc---cCCCCCCCCHhHHHHC-CCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCC
Q 011351          108 PARLPGFHTC---VGSGGERQTPEWYKEK-GIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGG  183 (488)
Q Consensus       108 ~~~~~~~~~~---~~~~~~~~~~~~~~~~-~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~  183 (488)
                      ..++......   ...........++++. +++++.++.+   ..+.+++.+ +++++.||+||||||+.|. .|+++|.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~---~~~~~~v~v-~~~~~~~d~lViATGs~p~-~p~i~G~  153 (463)
T PRK06370         79 SVDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHAR---FESPNTVRV-GGETLRAKRIFINTGARAA-IPPIPGL  153 (463)
T ss_pred             ccCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEE---EccCCEEEE-CcEEEEeCEEEEcCCCCCC-CCCCCCC
Confidence            0000000000   0000001223455665 8999887543   244667777 4567999999999999987 4566665


Q ss_pred             CCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcC
Q 011351          184 YLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNG  263 (488)
Q Consensus       184 ~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~G  263 (488)
                      +..++.+..      .+......+++++|||+|.+|+|+|..|.++|.+|+++++.+++++. +++++.+.+.+.|++.|
T Consensus       154 ~~~~~~~~~------~~~~~~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~G  226 (463)
T PRK06370        154 DEVGYLTNE------TIFSLDELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR-EDEDVAAAVREILEREG  226 (463)
T ss_pred             CcCceEcch------HhhCccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc-cCHHHHHHHHHHHHhCC
Confidence            444443322      22222245799999999999999999999999999999999999885 78899999999999999


Q ss_pred             cEEEcCCeEEEEEeCCCCcEEEEEeC-CCcEEEcCEEEEeecCccCCh-h-hhhcCCccc-CCCEEeCCCCCCCCCCEEE
Q 011351          264 VKFVKGASIKNLEAGSDGRVAAVKLE-DGSTIDADTIVIGIGAKPTVS-P-FERVGLNSS-VGGIQVDGQFRTRMPGIFA  339 (488)
Q Consensus       264 V~v~~~~~v~~i~~~~~~~v~~v~l~-~g~~i~~D~vi~a~G~~p~~~-~-~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa  339 (488)
                      |++++++++.+++..+++....+... +++++++|.||+|+|.+|+++ + +++.++..+ +|+|.||+++||+.|||||
T Consensus       227 V~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~l~t~~~~IyA  306 (463)
T PRK06370        227 IDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQLRTTNPGIYA  306 (463)
T ss_pred             CEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcCCcCCCCCEEE
Confidence            99999999999986433322223322 345799999999999999988 4 677888775 5779999999999999999


Q ss_pred             EceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCC--CCCCCceeEeccccCCCCcceeeEEeeCCCC-----
Q 011351          340 IGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT--YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-----  412 (488)
Q Consensus       340 ~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~~--~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~-----  412 (488)
                      +|||+..+.          ....|..||+.+|+||++.....  +..+|+.  ..++.+       +..+|....     
T Consensus       307 iGD~~~~~~----------~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~~--~~~~p~-------ia~vG~te~~a~~~  367 (463)
T PRK06370        307 AGDCNGRGA----------FTHTAYNDARIVAANLLDGGRRKVSDRIVPYA--TYTDPP-------LARVGMTEAEARKS  367 (463)
T ss_pred             eeecCCCcc----------cHHHHHHHHHHHHHHHhCCCCCCcccccCCeE--EEcCCC-------cEeeeCCHHHHHHc
Confidence            999987532          33468999999999999743333  3345542  222211       333443321     


Q ss_pred             --cE--EEE----------ccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC--hhhhcCCCcHHH
Q 011351          413 --ET--IEI----------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD--KAKLQQASSVEE  473 (488)
Q Consensus       413 --~~--~~~----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~  473 (488)
                        ++  ...          .+....+.+++++  +++|+|+++++.++.++... ..+|+++.+++  ...++.|||++|
T Consensus       368 g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e  447 (463)
T PRK06370        368 GRRVLVGTRPMTRVGRAVEKGETQGFMKVVVDADTDRILGATILGVHGDEMIHEILDAMYAGAPYTTLSRAIHIHPTVSE  447 (463)
T ss_pred             CCCeEEEEEecCcchhHHhcCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcccCCChHH
Confidence              00  000          0112347777775  59999999988887776655 44578888887  344588999999


Q ss_pred             HHHHHHccCCc
Q 011351          474 ALEIARAALPV  484 (488)
Q Consensus       474 ~~~~~~~~~~~  484 (488)
                      +++.+++++..
T Consensus       448 ~~~~a~~~~~~  458 (463)
T PRK06370        448 LIPTLAQALRR  458 (463)
T ss_pred             HHHHHHHhhhh
Confidence            99999987643

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=100.00  E-value=2.8e-42  Score=352.58  Aligned_cols=403  Identities=17%  Similarity=0.247  Sum_probs=280.5

Q ss_pred             CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC----CCCCccccC--------CCCCCCCCCCCcc
Q 011351           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER----PALTKGYLF--------PLDKKPARLPGFH  115 (488)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~----~~l~~~~~~--------~~~~~~~~~~~~~  115 (488)
                      ++.++||+|||||+||++||..|++.|.   +|+|||+.+......    ..-++.+..        ........+....
T Consensus         2 ~~~~yDvvVIGaGpaG~~aA~~la~~G~---~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~   78 (461)
T PRK05249          2 HMYDYDLVVIGSGPAGEGAAMQAAKLGK---RVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKL   78 (461)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCC---EEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcC
Confidence            4567999999999999999999999987   899999865432110    000110000        0000000000000


Q ss_pred             cccCCC-----------CCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCc--EEEeccEEeccCCCCCcCCCCCC
Q 011351          116 TCVGSG-----------GERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKIG  182 (488)
Q Consensus       116 ~~~~~~-----------~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~--~i~yd~lVlAtG~~~~~~~~~~g  182 (488)
                      ......           ......+++++.+++++.+ .+..++....++...+|+  .+.||+||||||+.|.. |+.++
T Consensus        79 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~-p~~~~  156 (461)
T PRK05249         79 RITFADLLARADHVINKQVEVRRGQYERNRVDLIQG-RARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYR-PPDVD  156 (461)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE-EEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCC-CCCCC
Confidence            000000           0001233456779999986 566677665566666664  69999999999999864 44344


Q ss_pred             CCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHc
Q 011351          183 GYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN  262 (488)
Q Consensus       183 ~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~  262 (488)
                      ...+++++      ++.+......+++++|||+|.+|+|+|..|++.|.+|+++++.+++++. +++++.+.+.+.+++.
T Consensus       157 ~~~~~v~~------~~~~~~~~~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~~  229 (461)
T PRK05249        157 FDHPRIYD------SDSILSLDHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF-LDDEISDALSYHLRDS  229 (461)
T ss_pred             CCCCeEEc------HHHhhchhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc-CCHHHHHHHHHHHHHc
Confidence            33333332      3334444456899999999999999999999999999999999999984 8999999999999999


Q ss_pred             CcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCCCCCCCCEEE
Q 011351          263 GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFA  339 (488)
Q Consensus       263 GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa  339 (488)
                      ||++++++++++++..++ .+ .+.+.+|+++++|.|++|+|.+|++++  ++..++..+ +|++.||+++||+.|||||
T Consensus       230 gI~v~~~~~v~~i~~~~~-~~-~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyA  307 (461)
T PRK05249        230 GVTIRHNEEVEKVEGGDD-GV-IVHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNENYQTAVPHIYA  307 (461)
T ss_pred             CCEEEECCEEEEEEEeCC-eE-EEEECCCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCCcccCCCCEEE
Confidence            999999999999985433 33 456778889999999999999999885  577888765 5779999999999999999


Q ss_pred             EceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeEeccccCCCCcceeeEEeeCCCC------
Q 011351          340 IGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG------  412 (488)
Q Consensus       340 ~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~------  412 (488)
                      +|||+..+.          ....|..+|+.+|.+|++... ..+..+|..   .|..+-      +.++|....      
T Consensus       308 iGD~~~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~---i~~~p~------ia~vG~te~~a~~~g  368 (461)
T PRK05249        308 VGDVIGFPS----------LASASMDQGRIAAQHAVGEATAHLIEDIPTG---IYTIPE------ISSVGKTEQELTAAK  368 (461)
T ss_pred             eeecCCCcc----------cHhHHHHHHHHHHHHHcCCCcccccCCCCeE---EECCCc------ceEecCCHHHHHHcC
Confidence            999997532          345699999999999996432 234456653   333221      223333211      


Q ss_pred             --------------cEEEEccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC-h-hhhcCCCcHHH
Q 011351          413 --------------ETIEIGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEE  473 (488)
Q Consensus       413 --------------~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~  473 (488)
                                    .....+ ....+.+++++  +++|+|+++++.++.++... ..+|+.+.+++ . ..++.|||++|
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~-~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e  447 (461)
T PRK05249        369 VPYEVGRARFKELARAQIAG-DNVGMLKILFHRETLEILGVHCFGERATEIIHIGQAIMEQKGTIEYFVNTTFNYPTMAE  447 (461)
T ss_pred             CCeEEEEEccccccceeecC-CCCcEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHH
Confidence                          001111 12457777764  59999999988887776655 44578888876 3 44588999999


Q ss_pred             HHHHHHccCCc
Q 011351          474 ALEIARAALPV  484 (488)
Q Consensus       474 ~~~~~~~~~~~  484 (488)
                      +++.+++++.+
T Consensus       448 ~~~~~~~~~~~  458 (461)
T PRK05249        448 AYRVAALDGLN  458 (461)
T ss_pred             HHHHHHHHHhc
Confidence            99999876654

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=100.00  E-value=1.5e-41  Score=344.14  Aligned_cols=392  Identities=20%  Similarity=0.272  Sum_probs=266.9

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---C-CCCCccccC--------------CCCCC---C
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---R-PALTKGYLF--------------PLDKK---P  108 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~---~-~~l~~~~~~--------------~~~~~---~  108 (488)
                      +++||+||||||||++||..+++.|.   +|+|||++.. ...   + +--++.++.              .....   .
T Consensus         1 ~~yDvvVIG~GpaG~~aA~~aa~~G~---~V~liE~~~~-GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~   76 (450)
T TIGR01421         1 KHYDYLVIGGGSGGIASARRAAEHGA---KALLVEAKKL-GGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENT   76 (450)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCC---cEEEeccccc-ccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCc
Confidence            35899999999999999999999987   8999998642 111   0 000110000              00000   0


Q ss_pred             CCCCCccccc---CCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCC
Q 011351          109 ARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL  185 (488)
Q Consensus       109 ~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~  185 (488)
                      .+++......   -..........+++.+++++.++.+.   .+.++|.+ +++.+.||+||||||+.|..++.++|.+ 
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~---~~~~~v~v-~~~~~~~d~vIiAtGs~p~~p~~i~g~~-  151 (450)
T TIGR01421        77 FNWPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARF---TKDGTVEV-NGRDYTAPHILIATGGKPSFPENIPGAE-  151 (450)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE---ccCCEEEE-CCEEEEeCEEEEecCCCCCCCCCCCCCc-
Confidence            0000000000   00000012233456799999875432   34566766 5667999999999999986431444422 


Q ss_pred             CcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcE
Q 011351          186 PGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK  265 (488)
Q Consensus       186 ~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~  265 (488)
                          ...   +.+.+......+++++|||+|.+|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.|++.||+
T Consensus       152 ----~~~---~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~-~d~~~~~~~~~~l~~~gI~  223 (450)
T TIGR01421       152 ----LGT---DSDGFFALEELPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRS-FDSMISETITEEYEKEGIN  223 (450)
T ss_pred             ----eeE---cHHHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcc-cCHHHHHHHHHHHHHcCCE
Confidence                111   22333333345799999999999999999999999999999999999864 8999999999999999999


Q ss_pred             EEcCCeEEEEEeCCCCcEEEEEeCCC-cEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCCCCCCCCEEEEc
Q 011351          266 FVKGASIKNLEAGSDGRVAAVKLEDG-STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIG  341 (488)
Q Consensus       266 v~~~~~v~~i~~~~~~~v~~v~l~~g-~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~G  341 (488)
                      +++++.+++++.++++. ..+.+++| +++++|.|++++|++|++++  ++..+++.+ +|++.||++++|++|||||+|
T Consensus       224 i~~~~~v~~i~~~~~~~-~~v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T~~p~IyAiG  302 (450)
T TIGR01421       224 VHKLSKPVKVEKTVEGK-LVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQNTNVPGIYALG  302 (450)
T ss_pred             EEcCCEEEEEEEeCCce-EEEEECCCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCCCcCCCCCEEEEE
Confidence            99999999998643332 35677777 57999999999999999985  577888875 577999999999999999999


Q ss_pred             eecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC---CCCCCCCceeEeccccCCCCcceeeEEeeCCCCc-----
Q 011351          342 DVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT---HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-----  413 (488)
Q Consensus       342 D~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~---~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~-----  413 (488)
                      ||+..+.          .+..|..+|+.+|++|+++..   ..+..+|.   ..|..+-      +..+|....+     
T Consensus       303 D~~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~---~~f~~p~------ia~vGlte~~a~~~~  363 (450)
T TIGR01421       303 DVVGKVE----------LTPVAIAAGRKLSERLFNGKTDDKLDYNNVPT---VVFSHPP------IGTIGLTEKEAIEKY  363 (450)
T ss_pred             ecCCCcc----------cHHHHHHHHHHHHHHHhcCCCCCccCcccCCe---EEeCCCc------eEEEeCCHHHHHhhc
Confidence            9997532          345689999999999986432   23455664   2333221      2223322110     


Q ss_pred             ----EE-EEc-----------cCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC-h-hhhcCCCcHH
Q 011351          414 ----TI-EIG-----------NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVE  472 (488)
Q Consensus       414 ----~~-~~~-----------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~  472 (488)
                          .. ...           +....+.++.++  +++|+|+++++.++.++... ..+|+++.+++ . ..++.|||++
T Consensus       364 g~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~  443 (450)
T TIGR01421       364 GKENIKVYNSSFTPMYYAMTSEKQKCRMKLVCAGKEEKVVGLHGIGDGVDEMLQGFAVAIKMGATKADFDNTVAIHPTSS  443 (450)
T ss_pred             CCCCEEEEEEEcChhHHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChH
Confidence                00 000           112346677664  69999999988878776655 55678888886 3 3358899999


Q ss_pred             HHHHHH
Q 011351          473 EALEIA  478 (488)
Q Consensus       473 ~~~~~~  478 (488)
                      |++..+
T Consensus       444 e~~~~~  449 (450)
T TIGR01421       444 EELVTM  449 (450)
T ss_pred             HHHhhc
Confidence            998765

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PLN02507 glutathione reductase

Probab=100.00  E-value=9e-41  Score=341.43  Aligned_cols=396  Identities=18%  Similarity=0.228  Sum_probs=273.6

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC---------CCCCCC---C-CCCCccccCC--------C-CC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE---------AYAPYE---R-PALTKGYLFP--------L-DK  106 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~---------~~~~~~---~-~~l~~~~~~~--------~-~~  106 (488)
                      ..++||+|||||+||+.||..+++.|.   +|+|||+.         ......   + +--++.++..        . ..
T Consensus        23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~---~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~   99 (499)
T PLN02507         23 HYDFDLFVIGAGSGGVRAARFSANFGA---KVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKN   99 (499)
T ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHh
Confidence            346899999999999999999999987   89999962         111110   0 0001111000        0 00


Q ss_pred             CCCCCCCcccccCC-----------CCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCc--EEEeccEEeccCCC
Q 011351          107 KPARLPGFHTCVGS-----------GGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCT  173 (488)
Q Consensus       107 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~--~i~yd~lVlAtG~~  173 (488)
                      .-.+..........           .........+...+++++.+ ++..+++...+|++.+|+  .+.||+||||||+.
T Consensus       100 ~G~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g-~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs~  178 (499)
T PLN02507        100 YGWEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEG-EGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSR  178 (499)
T ss_pred             cCcccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecCCEEEEEeCCCcEEEEEcCEEEEecCCC
Confidence            00000000000000           00000113345579999985 788888887888887876  58899999999999


Q ss_pred             CCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHH
Q 011351          174 ASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQ  253 (488)
Q Consensus       174 ~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~  253 (488)
                      +. .|.++|.+     ...+..+...+   ...+++++|||+|.+|+|+|..+.++|.+|+++++.+++++. +++++.+
T Consensus       179 p~-~p~ipG~~-----~~~~~~~~~~l---~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~-~d~~~~~  248 (499)
T PLN02507        179 AQ-RPNIPGKE-----LAITSDEALSL---EELPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRG-FDDEMRA  248 (499)
T ss_pred             CC-CCCCCCcc-----ceechHHhhhh---hhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcc-cCHHHHH
Confidence            86 35444421     11222333222   235789999999999999999999999999999999988874 8999999


Q ss_pred             HHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCC
Q 011351          254 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQF  330 (488)
Q Consensus       254 ~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~  330 (488)
                      .+.+.|++.||++++++++++++..+ +.+ .+.+.+|+++++|.|++++|++|++++  +++++++.+ +|+|.||+++
T Consensus       249 ~l~~~l~~~GI~i~~~~~V~~i~~~~-~~~-~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~  326 (499)
T PLN02507        249 VVARNLEGRGINLHPRTNLTQLTKTE-GGI-KVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEYS  326 (499)
T ss_pred             HHHHHHHhCCCEEEeCCEEEEEEEeC-CeE-EEEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCCCC
Confidence            99999999999999999999998543 333 467778889999999999999999986  678888875 5779999999


Q ss_pred             CCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCCCCceeEeccccCCCCcceeeEEee
Q 011351          331 RTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFG  408 (488)
Q Consensus       331 ~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~g  408 (488)
                      ||+.|||||+|||+..+.          ....|..||+.+|+||+++...  .+..+|.   ..|+++-      +..+|
T Consensus       327 ~Ts~p~IyAiGDv~~~~~----------l~~~A~~qg~~aa~ni~g~~~~~~~~~~~p~---~if~~p~------ia~vG  387 (499)
T PLN02507        327 RTNIPSIWAIGDVTNRIN----------LTPVALMEGTCFAKTVFGGQPTKPDYENVAC---AVFCIPP------LSVVG  387 (499)
T ss_pred             cCCCCCEEEeeEcCCCCc----------cHHHHHHHHHHHHHHHcCCCCCcCCCCCCCe---EEECCCc------cEEEe
Confidence            999999999999997432          3456999999999999875432  2344553   3444321      22233


Q ss_pred             CCCC--------cEE------------EEccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC-h-h
Q 011351          409 DNVG--------ETI------------EIGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-A  463 (488)
Q Consensus       409 ~~~~--------~~~------------~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~  463 (488)
                      ....        ...            ..+.....+.++.++  +++|+|+++++.++.++... ..+|+.+.+++ . .
T Consensus       388 lte~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~  467 (499)
T PLN02507        388 LSEEEAVEQAKGDILVFTSSFNPMKNTISGRQEKTVMKLIVDAETDKVLGASMCGPDAPEIMQGIAVALKCGATKAQFDS  467 (499)
T ss_pred             CCHHHHHhccCCCEEEEEeecCccccccccCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhh
Confidence            2210        000            011112347777764  58999999888777766655 45678888886 2 4


Q ss_pred             hhcCCCcHHHHHHHHH
Q 011351          464 KLQQASSVEEALEIAR  479 (488)
Q Consensus       464 ~~~~~~~~~~~~~~~~  479 (488)
                      .++.|||++|.+..++
T Consensus       468 ~~~~hPt~~E~~~~~~  483 (499)
T PLN02507        468 TVGIHPSAAEEFVTMR  483 (499)
T ss_pred             cCcCCCChHHHHHHHH
Confidence            4589999999998875

>PRK14694 putative mercuric reductase; Provisional

Probab=100.00  E-value=1.9e-41  Score=345.95  Aligned_cols=401  Identities=17%  Similarity=0.264  Sum_probs=272.6

Q ss_pred             CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCC-CCCCccccC-----C-CCCCC--CCC----C
Q 011351           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YER-PALTKGYLF-----P-LDKKP--ARL----P  112 (488)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~--~~~-~~l~~~~~~-----~-~~~~~--~~~----~  112 (488)
                      ...++||+|||||+||++||..|++.|.   +|+|||++..-.  .++ +--++.++.     . .....  .-+    +
T Consensus         3 ~~~~~dviVIGaG~aG~~aA~~l~~~g~---~v~lie~~~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~   79 (468)
T PRK14694          3 SDNNLHIAVIGSGGSAMAAALKATERGA---RVTLIERGTIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAP   79 (468)
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHhCCC---cEEEEEccccccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCC
Confidence            4567999999999999999999999987   899999874210  000 000110000     0 00000  000    0


Q ss_pred             Ccc--cccC------CCCCC-CCHhHHHH-CCCeEEeCCcEEEEeCCCcEEEeCCCc--EEEeccEEeccCCCCCcCCCC
Q 011351          113 GFH--TCVG------SGGER-QTPEWYKE-KGIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEK  180 (488)
Q Consensus       113 ~~~--~~~~------~~~~~-~~~~~~~~-~~i~~~~~~~v~~id~~~~~v~~~~g~--~i~yd~lVlAtG~~~~~~~~~  180 (488)
                      .+.  ....      ..... .....++. .+++++.+ ++..+|+...+|++.+|.  ++.||+||||||+.|. .|++
T Consensus        80 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g-~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p~-~p~i  157 (468)
T PRK14694         80 VVDRSALLAQQQARVEELRESKYQSILRENAAITVLNG-EARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPA-EPPV  157 (468)
T ss_pred             ccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEE-EEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCCC-CCCC
Confidence            000  0000      00000 01122333 37898875 789999888888888773  6999999999999986 4555


Q ss_pred             CCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHH
Q 011351          181 IGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ  260 (488)
Q Consensus       181 ~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~  260 (488)
                      +|.+...+.+.   .+...   ....+++++|||+|++|+|+|..|.++|.+|+++.+ +++++. +++++.+.+++.|+
T Consensus       158 ~G~~~~~~~~~---~~~~~---l~~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~-~~~l~~-~~~~~~~~l~~~l~  229 (468)
T PRK14694        158 PGLAETPYLTS---TSALE---LDHIPERLLVIGASVVALELAQAFARLGSRVTVLAR-SRVLSQ-EDPAVGEAIEAAFR  229 (468)
T ss_pred             CCCCCCceEcc---hhhhc---hhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEC-CCCCCC-CCHHHHHHHHHHHH
Confidence            66432222221   22222   223478999999999999999999999999999986 467764 78999999999999


Q ss_pred             HcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhh--hhcCCcccCCCEEeCCCCCCCCCCEE
Q 011351          261 QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLNSSVGGIQVDGQFRTRMPGIF  338 (488)
Q Consensus       261 ~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~--~~~gl~~~~g~i~vd~~~~t~~~~If  338 (488)
                      +.||++++++.+++++.+ ++.+ .+.+.++ ++++|.|++++|.+|+++++  ++++++.++|+|.||++++|++||||
T Consensus       230 ~~GI~v~~~~~v~~i~~~-~~~~-~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~G~i~vd~~~~Ts~~~Iy  306 (468)
T PRK14694        230 REGIEVLKQTQASEVDYN-GREF-ILETNAG-TLRAEQLLVATGRTPNTENLNLESIGVETERGAIRIDEHLQTTVSGIY  306 (468)
T ss_pred             hCCCEEEeCCEEEEEEEc-CCEE-EEEECCC-EEEeCEEEEccCCCCCcCCCCchhcCcccCCCeEeeCCCcccCCCCEE
Confidence            999999999999999854 3322 3555444 69999999999999999874  56788777788999999999999999


Q ss_pred             EEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeEeccccCCCCcceeeEEeeCCCC-----
Q 011351          339 AIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-----  412 (488)
Q Consensus       339 a~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~-----  412 (488)
                      |+|||+..+.          ....|..+|+.+|.||++... ..+..+|.+  ..++.+       +..+|....     
T Consensus       307 A~GD~~~~~~----------~~~~A~~~G~~aa~~i~~~~~~~~~~~~p~~--~~~~p~-------~a~vGlte~~a~~~  367 (468)
T PRK14694        307 AAGDCTDQPQ----------FVYVAAAGGSRAAINMTGGDASLDLSAMPEV--IFTDPQ-------VATVGLSEAEAQAQ  367 (468)
T ss_pred             EEeecCCCcc----------cHHHHHHHHHHHHHHhcCCCcccccCCCCeE--EECCCC-------eEEeeCCHHHHHHc
Confidence            9999997543          345688899999999986432 223345543  222221       333444321     


Q ss_pred             --cE--EEE----------ccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC-h-hhhcCCCcHHH
Q 011351          413 --ET--IEI----------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEE  473 (488)
Q Consensus       413 --~~--~~~----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~  473 (488)
                        +.  ...          ......+.++.++  +++|+|+++++.++.++... ..+|+.+.+++ . ...+.|||++|
T Consensus       368 g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e  447 (468)
T PRK14694        368 GYDTDSRTLDLENVPRALVNFDTGGFIKMVAERGSGRLLGVQVVAGEAGELIQTAVMALRARMTVNEIADELFPYLTMVE  447 (468)
T ss_pred             CCceEEEEEecccchhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhccccCCCchHH
Confidence              00  000          1112347777763  59999999877777776655 44578888886 3 34588999999


Q ss_pred             HHHHHHccCC
Q 011351          474 ALEIARAALP  483 (488)
Q Consensus       474 ~~~~~~~~~~  483 (488)
                      +++.+++.+.
T Consensus       448 ~~~~~~~~~~  457 (468)
T PRK14694        448 GLKLCAQTFT  457 (468)
T ss_pred             HHHHHHHhhh
Confidence            9999888653

>PRK06116 glutathione reductase; Validated

Probab=100.00  E-value=8e-41  Score=340.36  Aligned_cols=393  Identities=20%  Similarity=0.286  Sum_probs=271.0

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCC-CCCCccccC-----------------CCCCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YER-PALTKGYLF-----------------PLDKKPA  109 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~--~~~-~~l~~~~~~-----------------~~~~~~~  109 (488)
                      .++||+||||||||++||..|+++|.   +|+|||++..-.  .++ +--++.++.                 .......
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~~a~~G~---~V~liE~~~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~   79 (450)
T PRK06116          3 KDYDLIVIGGGSGGIASANRAAMYGA---KVALIEAKRLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKF   79 (450)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccchhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCc
Confidence            35899999999999999999999987   899999863210  000 000000000                 0000000


Q ss_pred             CCCCccccc---CCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCC
Q 011351          110 RLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP  186 (488)
Q Consensus       110 ~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~  186 (488)
                      ++.......   -..........+.+.+++++.+ ++..++  .++|++ +++++.||+||||||+.|. .|+++|.   
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g-~~~~v~--~~~v~~-~g~~~~~d~lViATGs~p~-~p~i~g~---  151 (450)
T PRK06116         80 DWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEG-FARFVD--AHTVEV-NGERYTADHILIATGGRPS-IPDIPGA---  151 (450)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEcc--CCEEEE-CCEEEEeCEEEEecCCCCC-CCCCCCc---
Confidence            000000000   0000001123345679999986 566665  467777 6778999999999999986 4544442   


Q ss_pred             cEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEE
Q 011351          187 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF  266 (488)
Q Consensus       187 gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v  266 (488)
                        ....+   ++.+......+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+++ .+++++.+.+.+.|++.||++
T Consensus       152 --~~~~~---~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~L~~~GV~i  225 (450)
T PRK06116        152 --EYGIT---SDGFFALEELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLR-GFDPDIRETLVEEMEKKGIRL  225 (450)
T ss_pred             --ceeEc---hhHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCcc-ccCHHHHHHHHHHHHHCCcEE
Confidence              22211   222222234578999999999999999999999999999999998886 479999999999999999999


Q ss_pred             EcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCCCCCCCCEEEEcee
Q 011351          267 VKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDV  343 (488)
Q Consensus       267 ~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~  343 (488)
                      ++++++++++..+++.+ .+.+.+|+++++|.|++|+|.+|+++.  ++..+++.+ +|+|.||+++||++|||||+|||
T Consensus       226 ~~~~~V~~i~~~~~g~~-~v~~~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~  304 (450)
T PRK06116        226 HTNAVPKAVEKNADGSL-TLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNTNVPGIYAVGDV  304 (450)
T ss_pred             ECCCEEEEEEEcCCceE-EEEEcCCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCCCCcCCCCEEEEeec
Confidence            99999999986544433 467788889999999999999999885  577888875 57799999999999999999999


Q ss_pred             cccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-C--CCCCCCceeEeccccCCCCcceeeEEeeCCCC-------c
Q 011351          344 AAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-H--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------E  413 (488)
Q Consensus       344 a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~-~--~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~-------~  413 (488)
                      +..+.          .+..|..||+.+|+||++... .  .+..+|+   ..|+.+-      +..+|....       +
T Consensus       305 ~~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~---~if~~p~------~a~vGlte~~a~~~~~~  365 (450)
T PRK06116        305 TGRVE----------LTPVAIAAGRRLSERLFNNKPDEKLDYSNIPT---VVFSHPP------IGTVGLTEEEAREQYGE  365 (450)
T ss_pred             CCCcC----------cHHHHHHHHHHHHHHHhCCCCCCcCCcCCCCe---EEeCCCc------cEEeeCCHHHHHHhCCC
Confidence            86432          455799999999999997433 2  3455664   3344321      223343211       1


Q ss_pred             --EEE-Ec-----------cCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC-h-hhhcCCCcHHHH
Q 011351          414 --TIE-IG-----------NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEEA  474 (488)
Q Consensus       414 --~~~-~~-----------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~~  474 (488)
                        ... ..           +....+.+++++  +++|+|+++++.++.++... ..+|+++.+++ . ..++.|||++|+
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~  445 (450)
T PRK06116        366 DNVKVYRSSFTPMYTALTGHRQPCLMKLVVVGKEEKVVGLHGIGFGADEMIQGFAVAIKMGATKADFDNTVAIHPTAAEE  445 (450)
T ss_pred             CcEEEEEEecchhHHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCChHHH
Confidence              110 00           112357777774  59999999988777776654 55678888886 2 345889999999


Q ss_pred             HHHHH
Q 011351          475 LEIAR  479 (488)
Q Consensus       475 ~~~~~  479 (488)
                      +..++
T Consensus       446 ~~~~~  450 (450)
T PRK06116        446 FVTMR  450 (450)
T ss_pred             HhhcC
Confidence            98763

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=2.6e-41  Score=344.30  Aligned_cols=403  Identities=15%  Similarity=0.214  Sum_probs=270.8

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---CCCC-CccccC---------C-------CCCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---RPAL-TKGYLF---------P-------LDKKP  108 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~---~~~l-~~~~~~---------~-------~~~~~  108 (488)
                      +.++||+|||||+||++||..+++.|.   +|+|||+.+.+...   +... ++.++.         .       .....
T Consensus         2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~---~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~   78 (471)
T PRK06467          2 EIKTQVVVLGAGPAGYSAAFRAADLGL---ETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPK   78 (471)
T ss_pred             CccceEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCC
Confidence            346899999999999999999999987   89999987533211   0000 111110         0       00000


Q ss_pred             CCCCCccccc---CCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCC--cEEEeccEEeccCCCCCcCCCCCCC
Q 011351          109 ARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIGG  183 (488)
Q Consensus       109 ~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g--~~i~yd~lVlAtG~~~~~~~~~~g~  183 (488)
                      .++..+....   -..........+++.+++++.+ .+.-++.....|...+|  .++.||+||||||+.|..+|.+++ 
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g-~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~~-  156 (471)
T PRK06467         79 IDIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNG-LGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPH-  156 (471)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCCCCC-
Confidence            0000000000   0000001123345679999986 45555543334444456  469999999999999865454333 


Q ss_pred             CCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcC
Q 011351          184 YLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNG  263 (488)
Q Consensus       184 ~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~G  263 (488)
                      ..+++.+      .....+....+++++|||+|.+|+|+|..|.++|.+|+++++.+++++. +++++.+.+.+.|++. 
T Consensus       157 ~~~~v~~------~~~~~~~~~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~-~d~~~~~~~~~~l~~~-  228 (471)
T PRK06467        157 DDPRIWD------STDALELKEVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA-ADKDIVKVFTKRIKKQ-  228 (471)
T ss_pred             CCCcEEC------hHHhhccccCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc-CCHHHHHHHHHHHhhc-
Confidence            2333332      2222222345789999999999999999999999999999999999985 7999999999999998 


Q ss_pred             cEEEcCCeEEEEEeCCCCcEEEEEeCC--C--cEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCCCCCCCC
Q 011351          264 VKFVKGASIKNLEAGSDGRVAAVKLED--G--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPG  336 (488)
Q Consensus       264 V~v~~~~~v~~i~~~~~~~v~~v~l~~--g--~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~  336 (488)
                      |++++++++++++..++ .+ .+.+.+  +  +++++|.||+++|++|++++  ++..+++.+ +|+|.||+++||+.||
T Consensus       229 v~i~~~~~v~~i~~~~~-~~-~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~t~~p~  306 (471)
T PRK06467        229 FNIMLETKVTAVEAKED-GI-YVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRTNVPH  306 (471)
T ss_pred             eEEEcCCEEEEEEEcCC-EE-EEEEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCcccCCCC
Confidence            99999999999985433 22 344433  2  46999999999999999985  467788875 6779999999999999


Q ss_pred             EEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeEeccccCCCCcceeeEEeeCCCCc--
Q 011351          337 IFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE--  413 (488)
Q Consensus       337 Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~--  413 (488)
                      |||+|||+..+.          ....|..+|+.+|.+|++... ..+..+|+.  ..++.+       +..+|....+  
T Consensus       307 VyAiGDv~~~~~----------la~~A~~eG~~aa~~i~g~~~~~~~~~~p~~--~~~~p~-------ia~vGlte~ea~  367 (471)
T PRK06467        307 IFAIGDIVGQPM----------LAHKGVHEGHVAAEVIAGKKHYFDPKVIPSI--AYTEPE-------VAWVGLTEKEAK  367 (471)
T ss_pred             EEEehhhcCCcc----------cHHHHHHHHHHHHHHHcCCCCCCCCCCCCeE--EECCCc-------eeEEECCHHHHH
Confidence            999999996432          455699999999999987432 223446653  222221       3334433210  


Q ss_pred             -----E--EEE----------ccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC-h-hhhcCCCcH
Q 011351          414 -----T--IEI----------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSV  471 (488)
Q Consensus       414 -----~--~~~----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~  471 (488)
                           .  ...          .+....+.++.++  +++|+|+++++.++.++... ..+|+.+.+++ . ..++.||++
T Consensus       368 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~t~~ilG~~~vg~~a~e~i~~~a~ai~~~~t~~~l~~~~~~hPt~  447 (471)
T PRK06467        368 EEGIEYETATFPWAASGRAIASDCADGMTKLIFDKETHRVLGGAIVGTNAGELLGEIGLAIEMGCDAEDIALTIHAHPTL  447 (471)
T ss_pred             hcCCCeEEEEEecCcchhhhhCCCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCh
Confidence                 0  000          0112347777774  58999999988888776655 44578888876 3 335789999


Q ss_pred             HHHHHHHHccCCcc
Q 011351          472 EEALEIARAALPVE  485 (488)
Q Consensus       472 ~~~~~~~~~~~~~~  485 (488)
                      +|+++.|++.+..+
T Consensus       448 ~e~~~~a~~~~~~~  461 (471)
T PRK06467        448 HESVGLAAEAFEGS  461 (471)
T ss_pred             HHHHHHHHHhhcCC
Confidence            99999998776543

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=2.3e-41  Score=345.63  Aligned_cols=401  Identities=22%  Similarity=0.300  Sum_probs=273.2

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCC-CCCCccccCCCC---------CCCCCC--C--C
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YER-PALTKGYLFPLD---------KKPARL--P--G  113 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~--~~~-~~l~~~~~~~~~---------~~~~~~--~--~  113 (488)
                      ..+||+|||||+||++||..|++.|.   +|+|||++..-.  ..+ +-.++.++....         ..-...  .  .
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~G~---~V~liE~~~~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~   79 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQLGL---KVAIVEKEKLGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGID   79 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHCCC---cEEEEeccccccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccC
Confidence            46899999999999999999999987   899999876211  000 000111110000         000000  0  0


Q ss_pred             ccccc------CCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCC-CcEEEeccEEeccCCCCCcCCCCCCCCCC
Q 011351          114 FHTCV------GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNS-GKLLKYGSLIVATGCTASRFPEKIGGYLP  186 (488)
Q Consensus       114 ~~~~~------~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~-g~~i~yd~lVlAtG~~~~~~~~~~g~~~~  186 (488)
                      +....      ...........+++.+++++.+ +++.+++...++...+ ++.+.||+||||||+.+..+   ++...+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~p~~~---pg~~~~  155 (462)
T PRK06416         80 FKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRG-EAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPREL---PGIEID  155 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCEEEEecCCCcEEEEeCEEEEeCCCCCCCC---CCCCCC
Confidence            00000      0000001223455679999986 6666776555555323 46799999999999988643   233333


Q ss_pred             cEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEE
Q 011351          187 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF  266 (488)
Q Consensus       187 gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v  266 (488)
                      +.. +.+..+..   .....+++++|||+|++|+|+|..|.++|.+|+++++.+++++. +++++.+.+.+.+++.||++
T Consensus       156 ~~~-v~~~~~~~---~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~gV~i  230 (462)
T PRK06416        156 GRV-IWTSDEAL---NLDEVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG-EDKEISKLAERALKKRGIKI  230 (462)
T ss_pred             CCe-EEcchHhh---CccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc-CCHHHHHHHHHHHHHcCCEE
Confidence            322 22222222   22235689999999999999999999999999999999999985 78999999999999999999


Q ss_pred             EcCCeEEEEEeCCCCcEEEEEeCCC---cEEEcCEEEEeecCccCChhh--hhcCCcccCCCEEeCCCCCCCCCCEEEEc
Q 011351          267 VKGASIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVSPF--ERVGLNSSVGGIQVDGQFRTRMPGIFAIG  341 (488)
Q Consensus       267 ~~~~~v~~i~~~~~~~v~~v~l~~g---~~i~~D~vi~a~G~~p~~~~~--~~~gl~~~~g~i~vd~~~~t~~~~Ifa~G  341 (488)
                      ++++++++++.++ +.+ .+.+.+|   +++++|.||+++|.+|+++++  ++.++..++|++.||++++|+.|+|||+|
T Consensus       231 ~~~~~V~~i~~~~-~~v-~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~~g~i~vd~~~~t~~~~VyAiG  308 (462)
T PRK06416        231 KTGAKAKKVEQTD-DGV-TVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTDRGFIEVDEQLRTNVPNIYAIG  308 (462)
T ss_pred             EeCCEEEEEEEeC-CEE-EEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeecCCEEeECCCCccCCCCEEEee
Confidence            9999999998643 333 4555555   679999999999999998874  67888777778999999999999999999


Q ss_pred             eecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCC--CCCceeEeccccCCCCcceeeEEeeCCCCc------
Q 011351          342 DVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYD--YLPYFYSRVFEYEGSPRKVWWQFFGDNVGE------  413 (488)
Q Consensus       342 D~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~~~~--~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~------  413 (488)
                      ||+..+.          .+..|..||+.+|.||++. ..+++  .+|.  ...++..       +..+|....+      
T Consensus       309 D~~~~~~----------~~~~A~~~g~~aa~ni~~~-~~~~~~~~~~~--~~~~~~~-------~a~vG~te~~a~~~g~  368 (462)
T PRK06416        309 DIVGGPM----------LAHKASAEGIIAAEAIAGN-PHPIDYRGIPA--VTYTHPE-------VASVGLTEAKAKEEGF  368 (462)
T ss_pred             ecCCCcc----------hHHHHHHHHHHHHHHHcCC-CCCCCCCCCCe--EEECCCc-------eEEEeCCHHHHHhcCC
Confidence            9997432          4567999999999999974 33333  3443  2333322       3344543211      


Q ss_pred             -EE-EEc-----------cCCCcEEEEEE--ECCEEEEEEeecCChHHhhHH-HHHHhcCCCCC-h-hhhcCCCcHHHHH
Q 011351          414 -TI-EIG-----------NFDPKIATFWI--DSGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEEAL  475 (488)
Q Consensus       414 -~~-~~~-----------~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~~~  475 (488)
                       .. ...           +....+.++.+  ++++|+|+++++.++.++... ..+|+++.+++ . .....|||+.|++
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~  448 (462)
T PRK06416        369 DVKVVKFPFAGNGKALALGETDGFVKLIFDKKDGEVLGAHMVGARASELIQEAQLAINWEATPEDLALTIHPHPTLSEAL  448 (462)
T ss_pred             CeEEEEEecCcChHhHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccCCCCHHHHH
Confidence             00 000           01234677766  369999999888887776655 45578888886 3 3357899999999


Q ss_pred             HHHHccCCc
Q 011351          476 EIARAALPV  484 (488)
Q Consensus       476 ~~~~~~~~~  484 (488)
                      +.+++.+..
T Consensus       449 ~~~~~~~~~  457 (462)
T PRK06416        449 GEAALAAAG  457 (462)
T ss_pred             HHHHHHhcc
Confidence            999876643

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=100.00  E-value=6.5e-41  Score=339.90  Aligned_cols=391  Identities=18%  Similarity=0.242  Sum_probs=269.1

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---C-CCCCccccC--------------CC--CCCCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---R-PALTKGYLF--------------PL--DKKPAR  110 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~---~-~~l~~~~~~--------------~~--~~~~~~  110 (488)
                      ++||+||||||||++||..+++.|.   +|+|||++. ....   + +--++.++.              ..  .....+
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~---~V~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~   77 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGA---KVAIAEEPR-VGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFD   77 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCC---cEEEEecCc-cCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcC
Confidence            5899999999999999999999998   899999853 2111   0 000110000              00  000000


Q ss_pred             CCCccc---ccCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCc
Q 011351          111 LPGFHT---CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG  187 (488)
Q Consensus       111 ~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~g  187 (488)
                      +.....   ..-..........+++.+++++.+ ++..+++....+. .+|+.+.||+||||||+.|. .|+++|.+   
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~v~~~~v~v~-~~g~~~~~d~lIiATGs~p~-~p~i~G~~---  151 (446)
T TIGR01424        78 WKKLLQKKDDEIARLSGLYKRLLANAGVELLEG-RARLVGPNTVEVL-QDGTTYTAKKILIAVGGRPQ-KPNLPGHE---  151 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecCCEEEEe-cCCeEEEcCEEEEecCCcCC-CCCCCCcc---
Confidence            000000   000000112234456779999885 7888877544443 46778999999999999986 45444422   


Q ss_pred             EEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEE
Q 011351          188 VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV  267 (488)
Q Consensus       188 v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~  267 (488)
                        ...+   ++........+++++|||+|.+|+|+|..+.+.|.+|+++++.+.+++. +++++.+.+.+.|++.||+++
T Consensus       152 --~~~~---~~~~~~l~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~~gV~i~  225 (446)
T TIGR01424       152 --LGIT---SNEAFHLPTLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRG-FDDDMRALLARNMEGRGIRIH  225 (446)
T ss_pred             --ceec---hHHhhcccccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcc-cCHHHHHHHHHHHHHCCCEEE
Confidence              1111   2222222235789999999999999999999999999999999998875 789999999999999999999


Q ss_pred             cCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCCCCCCCCEEEEceec
Q 011351          268 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVA  344 (488)
Q Consensus       268 ~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a  344 (488)
                      +++++++++..+++  ..+.+.+|+++++|.|++|+|.+|+++.  ++..+++.+ +|+|.||+++||++|||||+|||+
T Consensus       226 ~~~~v~~i~~~~~~--~~v~~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~  303 (446)
T TIGR01424       226 PQTSLTSITKTDDG--LKVTLSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYSRTSIPSIYAVGDVT  303 (446)
T ss_pred             eCCEEEEEEEcCCe--EEEEEcCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCCCccCCCCEEEeeccC
Confidence            99999999854333  2466778889999999999999999875  577888765 577999999999999999999999


Q ss_pred             ccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCC--CCCCCceeEeccccCCCCcceeeEEeeCCCC--------cE
Q 011351          345 AFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT--YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--------ET  414 (488)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~~--~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~--------~~  414 (488)
                      ..+.          ....|..||+.+|.||+++...+  +..+|+.   .|+.+-      +.++|....        ..
T Consensus       304 ~~~~----------l~~~A~~~g~~~a~~i~~~~~~~~~~~~~p~~---if~~p~------ia~vG~te~~a~~~~~~~~  364 (446)
T TIGR01424       304 DRIN----------LTPVAIMEATCFANTEFGNNPTKFDHDLIATA---VFSQPP------LGTVGLTEEEAREKFTGDI  364 (446)
T ss_pred             CCcc----------chhHHHHHHHHHHHHHhcCCCCccCcCCCCeE---EeCCch------hEEEECCHHHHHhhcCCCE
Confidence            6422          34568999999999999744322  3445643   333321      223333210        00


Q ss_pred             --EE----------EccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC-h-hhhcCCCcHHHHHHH
Q 011351          415 --IE----------IGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEEALEI  477 (488)
Q Consensus       415 --~~----------~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~~~~~  477 (488)
                        ..          ....+..+.++.++  +++|+|+++++.++.++... ..+|+++.+++ . ..++.|||++|++..
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~  444 (446)
T TIGR01424       365 LVYRAGFRPMKNTFSGRQEKTLMKLVVDEKDDKVLGAHMVGPDAAEIIQGIAIALKMGATKADFDSTVGIHPSSAEEFVT  444 (446)
T ss_pred             EEEEEecCchHhHhhcCCCceEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhccccCCChHHHHhh
Confidence              00          01112357777774  59999999988888776655 45678888887 3 445889999999876


Q ss_pred             H
Q 011351          478 A  478 (488)
Q Consensus       478 ~  478 (488)
                      +
T Consensus       445 ~  445 (446)
T TIGR01424       445 M  445 (446)
T ss_pred             c
Confidence            5

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=100.00  E-value=6.8e-41  Score=339.98  Aligned_cols=396  Identities=18%  Similarity=0.236  Sum_probs=269.9

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC----CC-CccccCCCCCCCCCCCCcccc---cCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP----AL-TKGYLFPLDKKPARLPGFHTC---VGSG  121 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~----~l-~~~~~~~~~~~~~~~~~~~~~---~~~~  121 (488)
                      +++||+|||||+||++||..|++.|.   +|+|||+++.......    .. ++.++.. .....++......   ....
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~la~~g~---~V~lie~~~~~~GG~~~~~gcip~k~l~~~-~~~~~~~~~~~~~~~~~~~~   77 (441)
T PRK08010          2 NKYQAVIIGFGKAGKTLAVTLAKAGW---RVALIEQSNAMYGGTCINIGCIPTKTLVHD-AQQHTDFVRAIQRKNEVVNF   77 (441)
T ss_pred             CcCCEEEECCCHhHHHHHHHHHHCCC---eEEEEcCCCCccceeEeeccccchHHHHHH-hccCCCHHHHHHHHHHHHHH
Confidence            46899999999999999999999987   8999998753211100    00 0100000 0000000000000   0000


Q ss_pred             CCCCC-HhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCc-EEEeccEEeccCCCCCcCCCCCCCC-CCcEEEecCHHHHH
Q 011351          122 GERQT-PEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK-LLKYGSLIVATGCTASRFPEKIGGY-LPGVHYIRDVADAD  198 (488)
Q Consensus       122 ~~~~~-~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~-~i~yd~lVlAtG~~~~~~~~~~g~~-~~gv~~~~~~~~~~  198 (488)
                      ..... .+..+..+++++.+ ++..++.....|.+.++. ++.||+||||||+.+. .|+++|.+ .+++++      +.
T Consensus        78 ~~~~~~~~~~~~~gv~~~~g-~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs~p~-~p~i~G~~~~~~v~~------~~  149 (441)
T PRK08010         78 LRNKNFHNLADMPNIDVIDG-QAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTV-VPPIPGITTTPGVYD------ST  149 (441)
T ss_pred             HHHhHHHHHhhcCCcEEEEE-EEEEecCCEEEEEeCCCeEEEEeCEEEEcCCCcCC-CCCCCCccCCCCEEC------hh
Confidence            00000 11122348998875 677788766677777775 6999999999999986 45666642 344433      23


Q ss_pred             HHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeC
Q 011351          199 ALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG  278 (488)
Q Consensus       199 ~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~  278 (488)
                      .+......+++++|||+|.+|+|+|..|.++|.+|+++++.+.+++. +++++.+.+.+.|++.||++++++++++++.+
T Consensus       150 ~~~~~~~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~  228 (441)
T PRK08010        150 GLLNLKELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR-EDRDIADNIATILRDQGVDIILNAHVERISHH  228 (441)
T ss_pred             HhhcccccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC-cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEc
Confidence            33333346789999999999999999999999999999999999886 58899999999999999999999999999854


Q ss_pred             CCCcEEEEEeCCCcEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCccc
Q 011351          279 SDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA  355 (488)
Q Consensus       279 ~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~  355 (488)
                       ++.+ .+.++++ ++++|.|++|+|.+|++++  ++++++..+ +|+|.||+++||++|||||+|||+..+.       
T Consensus       229 -~~~v-~v~~~~g-~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~-------  298 (441)
T PRK08010        229 -ENQV-QVHSEHA-QLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHTTADNIWAMGDVTGGLQ-------  298 (441)
T ss_pred             -CCEE-EEEEcCC-eEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCCCcc-------
Confidence             3333 3555555 5999999999999999876  467788765 5789999999999999999999998543       


Q ss_pred             ccccHHHHHHHHHHHHHHHhcCCCC---CCCCCCceeEeccccCCCCcceeeEEeeCCCC-------c--EEEE--c---
Q 011351          356 RVEHVDHARQSAQHCIKALLSAQTH---TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------E--TIEI--G---  418 (488)
Q Consensus       356 ~~~~~~~A~~~g~~~a~~i~~~~~~---~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~-------~--~~~~--~---  418 (488)
                         ....|..+|+.++.+|++....   .+..+|.  ...++.+       +..+|....       +  ....  .   
T Consensus       299 ---~~~~a~~~~~~~~~~~~g~~~~~~~~~~~~p~--~~~~~p~-------ia~vGlte~~a~~~g~~~~~~~~~~~~~~  366 (441)
T PRK08010        299 ---FTYISLDDYRIVRDELLGEGKRSTDDRKNVPY--SVFMTPP-------LSRVGMTEEQARESGADIQVVTLPVAAIP  366 (441)
T ss_pred             ---chhHHHHHHHHHHHHHcCCCCcccCccCCCCE--EEECCCC-------ceeeeCCHHHHHHcCCCeEEEEEecCcCh
Confidence               2234788899999999864221   2334564  2222322       223343321       0  0000  0   


Q ss_pred             -----cCCCcEEEEEEE--CCEEEEEEeecCChHHhhHHHH-HHhcCCCCCh--hhhcCCCcHHHHHHHHHc
Q 011351          419 -----NFDPKIATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVDK--AKLQQASSVEEALEIARA  480 (488)
Q Consensus       419 -----~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  480 (488)
                           .-...+.++.++  +++|+|+++++.++.++..... +|+++.+++.  ..++.|||++|.+..++.
T Consensus       367 ~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~  438 (441)
T PRK08010        367 RARVMNDTRGVLKAIVDNKTQRILGASLLCVDSHEMINIVKMVMDAGLPYSILRDQIFTHPSMSESLNDLFS  438 (441)
T ss_pred             hhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhccccCCchHHHHHHHHH
Confidence                 001346777764  6999999998888777665544 5788888762  445889999999988864

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=1.2e-40  Score=339.26  Aligned_cols=403  Identities=20%  Similarity=0.259  Sum_probs=268.0

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---C-CCCCccccCCCC-----C--CCCCCCCccccc
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---R-PALTKGYLFPLD-----K--KPARLPGFHTCV  118 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~---~-~~l~~~~~~~~~-----~--~~~~~~~~~~~~  118 (488)
                      +++||+||||||||++||..+++.|.   +|+|||+.......   + +--++.++....     .  ...++ +.....
T Consensus         2 ~~~DvvVIG~GpaG~~AA~~aa~~G~---~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~-gi~~~~   77 (466)
T PRK06115          2 ASYDVVIIGGGPGGYNAAIRAGQLGL---KVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHL-GIEVKP   77 (466)
T ss_pred             CcccEEEECCCHHHHHHHHHHHhCCC---eEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhc-CccccC
Confidence            35899999999999999999999987   89999974322211   0 000111110000     0  00000 000000


Q ss_pred             CCCCC--------------CCCHhHHHHCCCeEEeCCcEEEEeCCCc-EEEeCCCc--EEEeccEEeccCCCCCcCCCCC
Q 011351          119 GSGGE--------------RQTPEWYKEKGIEMIYQDPVTSIDIEKQ-TLITNSGK--LLKYGSLIVATGCTASRFPEKI  181 (488)
Q Consensus       119 ~~~~~--------------~~~~~~~~~~~i~~~~~~~v~~id~~~~-~v~~~~g~--~i~yd~lVlAtG~~~~~~~~~~  181 (488)
                      ...+.              .....+++..+++++.+. . .++.+.+ .|...+|+  ++.||+||||||++|..   ++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-a-~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~---ip  152 (466)
T PRK06115         78 TLNLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGW-G-RLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPTP---LP  152 (466)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-E-EEccCCEEEEEcCCCceEEEEeCEEEEeCCCCCCC---CC
Confidence            00000              011223455678888753 3 4444332 34445653  69999999999998753   33


Q ss_pred             CCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHH
Q 011351          182 GGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ  261 (488)
Q Consensus       182 g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~  261 (488)
                      +...++...+.    ++........+++++|||+|.+|+|+|..+.++|.+|+++++.+++++. +++++.+.+.+.|++
T Consensus       153 g~~~~~~~~~~----~~~~~~~~~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~-~d~~~~~~l~~~l~~  227 (466)
T PRK06115        153 GVTIDNQRIID----STGALSLPEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPG-TDTETAKTLQKALTK  227 (466)
T ss_pred             CCCCCCCeEEC----HHHHhCCccCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCC-CCHHHHHHHHHHHHh
Confidence            43344443332    2233332346799999999999999999999999999999999999985 789999999999999


Q ss_pred             cCcEEEcCCeEEEEEeCCCCcEEEEEe-C--CCcEEEcCEEEEeecCccCChh--hhhcCCcccCCCEEeCCCCCCCCCC
Q 011351          262 NGVKFVKGASIKNLEAGSDGRVAAVKL-E--DGSTIDADTIVIGIGAKPTVSP--FERVGLNSSVGGIQVDGQFRTRMPG  336 (488)
Q Consensus       262 ~GV~v~~~~~v~~i~~~~~~~v~~v~l-~--~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~g~i~vd~~~~t~~~~  336 (488)
                      .||++++++++++++..+++....+.. .  +++++++|.|++++|++|+++.  ++..++..+++++.||++++|+.|+
T Consensus       228 ~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G~~vd~~~~Ts~~~  307 (466)
T PRK06115        228 QGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRGMLANDHHRTSVPG  307 (466)
T ss_pred             cCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCCEEECCCeecCCCC
Confidence            999999999999998543332112221 1  2357999999999999999885  4567777765678899999999999


Q ss_pred             EEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeEeccccCCCCcceeeEEeeCCCC---
Q 011351          337 IFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG---  412 (488)
Q Consensus       337 Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~---  412 (488)
                      |||+|||+..+.          ....|.+||+.+|+||++... ..+..+|...   |..+-      +..+|....   
T Consensus       308 IyA~GD~~~~~~----------la~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~---~t~p~------ia~vGlte~~a~  368 (466)
T PRK06115        308 VWVIGDVTSGPM----------LAHKAEDEAVACIERIAGKAGEVNYGLIPGVI---YTRPE------VATVGKTEEQLK  368 (466)
T ss_pred             EEEeeecCCCcc----------cHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEE---ECCcc------cEEeeCCHHHHH
Confidence            999999997532          445699999999999997432 2345566532   22211      223343221   


Q ss_pred             ----cEEE-E---c--------cCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC-h-hhhcCCCcH
Q 011351          413 ----ETIE-I---G--------NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSV  471 (488)
Q Consensus       413 ----~~~~-~---~--------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~  471 (488)
                          +... .   .        .-...+.++.++  +++|+|+++++.++.++... ..+|+.+.+++ . ...+.|||+
T Consensus       369 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~dl~~~~~~hPt~  448 (466)
T PRK06115        369 AEGRAYKVGKFPFTANSRAKINHETEGFAKILADARTDEVLGVHMVGPSVSEMIGEFCVAMEFSASAEDIALTCHPHPTR  448 (466)
T ss_pred             HCCCCEEEEEEecccChhhHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCccCCCCh
Confidence                0100 0   0        012357777764  58999999888877776654 45578888876 3 335789999


Q ss_pred             HHHHHHHHccCCcc
Q 011351          472 EEALEIARAALPVE  485 (488)
Q Consensus       472 ~~~~~~~~~~~~~~  485 (488)
                      +|.+..+++.+...
T Consensus       449 ~e~~~~a~~~~~~~  462 (466)
T PRK06115        449 SEALRQAAMNVEGW  462 (466)
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999876554

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=2.5e-40  Score=338.27  Aligned_cols=401  Identities=20%  Similarity=0.276  Sum_probs=269.8

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---C-CCCCccccC------------CC----CCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---R-PALTKGYLF------------PL----DKKPA  109 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~---~-~~l~~~~~~------------~~----~~~~~  109 (488)
                      ..+||+|||||+||++||..|++.|.   +|+|||++.. ...   + +--++.++.            ..    .....
T Consensus         3 ~~ydvvVIG~GpaG~~aA~~aa~~G~---~v~lie~~~~-GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~   78 (472)
T PRK05976          3 KEYDLVIIGGGPGGYVAAIRAGQLGL---KTALVEKGKL-GGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPAL   78 (472)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCC---eEEEEEccCC-CcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCcc
Confidence            46899999999999999999999987   8999998632 111   0 000111000            00    00000


Q ss_pred             CCCCcccc---cCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCC-------CcEEEeCCC--cEEEeccEEeccCCCCCcC
Q 011351          110 RLPGFHTC---VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE-------KQTLITNSG--KLLKYGSLIVATGCTASRF  177 (488)
Q Consensus       110 ~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~-------~~~v~~~~g--~~i~yd~lVlAtG~~~~~~  177 (488)
                      ++......   .-........+.+++.+++++.+ +++.+|+.       ...|.+.+|  +++.||+||||||+.|..+
T Consensus        79 ~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g-~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~~  157 (472)
T PRK05976         79 DFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHG-IGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVEL  157 (472)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCCCC
Confidence            00000000   00000001123456679999986 77788877       556666676  4799999999999988643


Q ss_pred             CCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHH
Q 011351          178 PEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQ  257 (488)
Q Consensus       178 ~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~  257 (488)
                      |.   ....+.+.+ +..+.   ......+++++|||+|++|+|+|..|.++|.+|+++++.+++++. +++++.+.+.+
T Consensus       158 p~---~~~~~~~~~-~~~~~---~~~~~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~-~~~~~~~~l~~  229 (472)
T PRK05976        158 PG---LPFDGEYVI-SSDEA---LSLETLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPT-EDAELSKEVAR  229 (472)
T ss_pred             CC---CCCCCceEE-cchHh---hCccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCc-CCHHHHHHHHH
Confidence            32   222332222 22222   222234789999999999999999999999999999999999885 68899999999


Q ss_pred             HHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCc--EEEcCEEEEeecCccCChh--hhhcCCcccCCCEEeCCCCCCC
Q 011351          258 LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVSP--FERVGLNSSVGGIQVDGQFRTR  333 (488)
Q Consensus       258 ~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~--~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~g~i~vd~~~~t~  333 (488)
                      .|++.||++++++++++++..+++.+..+.+.+|+  ++++|.|++++|.+|+++.  ++..++..++|++.||++++|+
T Consensus       230 ~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~g~i~Vd~~l~ts  309 (472)
T PRK05976        230 LLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVEGGFIQIDDFCQTK  309 (472)
T ss_pred             HHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCceecCCEEEECCCcccC
Confidence            99999999999999999974212334344555663  6999999999999999875  4566666667889999999999


Q ss_pred             CCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCC--CCCceeEeccccCCCCcceeeEEeeCCC
Q 011351          334 MPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYD--YLPYFYSRVFEYEGSPRKVWWQFFGDNV  411 (488)
Q Consensus       334 ~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~~~~--~~p~~~~~~~~~~g~~~~~~~~~~g~~~  411 (488)
                      .|+|||+|||+..+.          .+..|..+|+.+|.+|.+.....++  ..|.  ...++..       +..+|...
T Consensus       310 ~~~IyAiGD~~~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~--~~~~~p~-------~a~vG~te  370 (472)
T PRK05976        310 ERHIYAIGDVIGEPQ----------LAHVAMAEGEMAAEHIAGKKPRPFDYAAIPA--CCYTDPE-------VASVGLTE  370 (472)
T ss_pred             CCCEEEeeecCCCcc----------cHHHHHHHHHHHHHHHcCCCCCCCCCCCCCE--EEECcCc-------eEEEeCCH
Confidence            999999999986422          4556999999999999875423333  3443  2222221       22333321


Q ss_pred             C-------cEEE--E----------ccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC-h-hhhcC
Q 011351          412 G-------ETIE--I----------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQ  467 (488)
Q Consensus       412 ~-------~~~~--~----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~  467 (488)
                      .       ++..  .          ......+.++.++  +++|+|+++++.++.++... ..+|+++.+++ . ..++.
T Consensus       371 ~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~  450 (472)
T PRK05976        371 EEAKEAGYDVKVGKFPFAANGKALTYGESDGFVKVVADRDTHDILGVQAVGPHVTELISEFALALELGARLWEVAGTIHP  450 (472)
T ss_pred             HHHHHcCCCEEEEEEECCcchhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccc
Confidence            1       0000  0          0112346777664  58999999888877776544 55678888886 3 33578


Q ss_pred             CCcHHHHHHHHHccC
Q 011351          468 ASSVEEALEIARAAL  482 (488)
Q Consensus       468 ~~~~~~~~~~~~~~~  482 (488)
                      |||+.|.++.+++.+
T Consensus       451 hPt~~e~~~~~~~~~  465 (472)
T PRK05976        451 HPTLSEAIQEAALAA  465 (472)
T ss_pred             CCChHHHHHHHHHHh
Confidence            999999999998754

>TIGR02053 MerA mercuric reductase

Probab=100.00  E-value=2.7e-40  Score=337.66  Aligned_cols=396  Identities=21%  Similarity=0.265  Sum_probs=270.1

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---C-CCCCcccc---------CCC------CCCCCCCC
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---R-PALTKGYL---------FPL------DKKPARLP  112 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~---~-~~l~~~~~---------~~~------~~~~~~~~  112 (488)
                      +||+||||||||++||..+++.|.   +|+|||+++. ...   + +--++.++         ...      .....++.
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~---~v~lie~~~~-GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~   76 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGA---SVAMVERGPL-GGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFG   76 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC---eEEEEeCCcc-cCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHH
Confidence            589999999999999999999987   8999998752 111   0 00000000         000      00000000


Q ss_pred             Ccc----cccCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCc-EEEeccEEeccCCCCCcCCCCCCCCCCc
Q 011351          113 GFH----TCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK-LLKYGSLIVATGCTASRFPEKIGGYLPG  187 (488)
Q Consensus       113 ~~~----~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~-~i~yd~lVlAtG~~~~~~~~~~g~~~~g  187 (488)
                      ...    ..............+++.+++++.+ ++..+  +.++|.+.+++ .+.||+||||||+.|. .|+++|.+..+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g-~~~~~--~~~~v~v~~g~~~~~~~~lIiATGs~p~-~p~i~G~~~~~  152 (463)
T TIGR02053        77 ELLEGKREVVEELRHEKYEDVLSSYGVDYLRG-RARFK--DPKTVKVDLGREVRGAKRFLIATGARPA-IPPIPGLKEAG  152 (463)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHhCCcEEEEE-EEEEc--cCCEEEEcCCeEEEEeCEEEEcCCCCCC-CCCCCCcccCc
Confidence            000    0000000001234567789999876 44443  45778887754 5899999999999986 45566644444


Q ss_pred             EEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEE
Q 011351          188 VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV  267 (488)
Q Consensus       188 v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~  267 (488)
                      +.+.      +.+......+++++|||+|.+|+|+|..|.++|.+|+++++.+++++. +++++...+++.+++.||+++
T Consensus       153 ~~~~------~~~~~~~~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~~gV~i~  225 (463)
T TIGR02053       153 YLTS------EEALALDRIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR-EEPEISAAVEEALAEEGIEVV  225 (463)
T ss_pred             eECc------hhhhCcccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc-cCHHHHHHHHHHHHHcCCEEE
Confidence            3322      222222234689999999999999999999999999999999999985 789999999999999999999


Q ss_pred             cCCeEEEEEeCCCCcEEEEEeC---CCcEEEcCEEEEeecCccCCh-h-hhhcCCccc-CCCEEeCCCCCCCCCCEEEEc
Q 011351          268 KGASIKNLEAGSDGRVAAVKLE---DGSTIDADTIVIGIGAKPTVS-P-FERVGLNSS-VGGIQVDGQFRTRMPGIFAIG  341 (488)
Q Consensus       268 ~~~~v~~i~~~~~~~v~~v~l~---~g~~i~~D~vi~a~G~~p~~~-~-~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~G  341 (488)
                      ++++|++++.++++  ..+.+.   +++++++|.|++|+|.+|+++ + ++..+++.+ +|+|.||+++||+.|||||+|
T Consensus       226 ~~~~V~~i~~~~~~--~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~VyAiG  303 (463)
T TIGR02053       226 TSAQVKAVSVRGGG--KIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRTSNPGIYAAG  303 (463)
T ss_pred             cCcEEEEEEEcCCE--EEEEEEeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCCccCCCCCEEEee
Confidence            99999999854332  233332   235799999999999999988 4 677788765 577999999999999999999


Q ss_pred             eecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCC--CCCCCceeEeccccCCCCcceeeEEeeCCCC-------
Q 011351          342 DVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT--YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------  412 (488)
Q Consensus       342 D~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~~--~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~-------  412 (488)
                      ||+..+.          .+..|..||+.+|.||++.....  +..+|+  ...++.+       +..+|....       
T Consensus       304 D~~~~~~----------~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~--~~~~~p~-------~a~vGlte~~a~~~g~  364 (463)
T TIGR02053       304 DVTGGLQ----------LEYVAAKEGVVAAENALGGANAKLDLLVIPR--VVFTDPA-------VASVGLTEAEAQKAGI  364 (463)
T ss_pred             ecCCCcc----------cHhHHHHHHHHHHHHhcCCCCCccCcCCCCe--EEeccCc-------eEEEeCCHHHHHhcCC
Confidence            9997532          45569999999999998742322  334553  2222221       333443321       


Q ss_pred             cE--EEE--c--------cCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC-h-hhhcCCCcHHHHH
Q 011351          413 ET--IEI--G--------NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEEAL  475 (488)
Q Consensus       413 ~~--~~~--~--------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~~~  475 (488)
                      +.  ...  .        .....+.++.++  +++|+|+++++.++.++... ..+|+++.+++ . .....|||+.|.+
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~pt~~e~~  444 (463)
T TIGR02053       365 ECDCRTLPLTNVPRARINRDTRGFIKLVAEPGTGKVLGVQVVAPEAAEVINEAALAIRAGMTVDDLIDTLHPFPTMAEGL  444 (463)
T ss_pred             CeEEEEEecccchHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCChHHHH
Confidence            00  000  0        112347777764  59999999988888776655 44578888776 3 3346799999999


Q ss_pred             HHHHccCC
Q 011351          476 EIARAALP  483 (488)
Q Consensus       476 ~~~~~~~~  483 (488)
                      ..+++.+.
T Consensus       445 ~~a~~~~~  452 (463)
T TIGR02053       445 KLAAQTFY  452 (463)
T ss_pred             HHHHHHhh
Confidence            99988754

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=100.00  E-value=1.5e-40  Score=338.59  Aligned_cols=400  Identities=20%  Similarity=0.286  Sum_probs=272.6

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC---CCCCCCCccccCCC--------------C-----CCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP---YERPALTKGYLFPL--------------D-----KKP  108 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~---~~~~~l~~~~~~~~--------------~-----~~~  108 (488)
                      +++++|||||++|+.||..+++.|.   +|+|||++..-.   ...+.-+|.++...              .     ...
T Consensus         1 ~~~vvviG~G~~G~~~a~~~~~~g~---~v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~   77 (466)
T PRK07845          1 MTRIVIIGGGPGGYEAALVAAQLGA---DVTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEAR   77 (466)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC---eEEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccc
Confidence            4689999999999999999999987   899999875211   00011111111000              0     000


Q ss_pred             CCCCCcccc---cCCCCCCCCHhHHHHCCCeEEeCCcEEEEe----CCCcEEEeCCCc--EEEeccEEeccCCCCCcCCC
Q 011351          109 ARLPGFHTC---VGSGGERQTPEWYKEKGIEMIYQDPVTSID----IEKQTLITNSGK--LLKYGSLIVATGCTASRFPE  179 (488)
Q Consensus       109 ~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~v~~id----~~~~~v~~~~g~--~i~yd~lVlAtG~~~~~~~~  179 (488)
                      .++......   ..........+.+++.+++++.+ ++..++    .....|.+.+|+  ++.||+||||||+.|..+| 
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~~~p-  155 (466)
T PRK07845         78 VDLPAVNARVKALAAAQSADIRARLEREGVRVIAG-RGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRILP-  155 (466)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE-EEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCCCCC-
Confidence            000000000   00000012234566789999986 566533    333345555665  6999999999999986433 


Q ss_pred             CCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHH
Q 011351          180 KIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY  259 (488)
Q Consensus       180 ~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l  259 (488)
                      .++.+.+.+++..++.+.      ...+++++|||+|.+|+|+|..|.++|.+|+++++.+++++. +++++.+.+.+.|
T Consensus       156 ~~~~~~~~v~~~~~~~~~------~~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~~~L  228 (466)
T PRK07845        156 TAEPDGERILTWRQLYDL------DELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG-EDADAAEVLEEVF  228 (466)
T ss_pred             CCCCCCceEEeehhhhcc------cccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC-CCHHHHHHHHHHH
Confidence            222223445554433322      234689999999999999999999999999999999999986 6899999999999


Q ss_pred             HHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCCCCCCCC
Q 011351          260 QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPG  336 (488)
Q Consensus       260 ~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~  336 (488)
                      +++||++++++++++++..+ +.+ .+.+.+|+++++|.|++++|++|++++  +++++++.+ +|+|.||++++|+.||
T Consensus       229 ~~~gV~i~~~~~v~~v~~~~-~~~-~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~~Ts~~~  306 (466)
T PRK07845        229 ARRGMTVLKRSRAESVERTG-DGV-VVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVSRTSVPG  306 (466)
T ss_pred             HHCCcEEEcCCEEEEEEEeC-CEE-EEEECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCCcccCCCC
Confidence            99999999999999997543 333 466778889999999999999999885  678888865 5779999999999999


Q ss_pred             EEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCCCCceeEeccccCCCCcceeeEEeeCCCC--
Q 011351          337 IFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--  412 (488)
Q Consensus       337 Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~--  412 (488)
                      |||+|||+..+.          .+..|..||+.++.++++....  .+..+|.   ..|..+-      +..+|....  
T Consensus       307 IyA~GD~~~~~~----------l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~---~vf~~p~------~a~vGlte~~a  367 (466)
T PRK07845        307 IYAAGDCTGVLP----------LASVAAMQGRIAMYHALGEAVSPLRLKTVAS---NVFTRPE------IATVGVSQAAI  367 (466)
T ss_pred             EEEEeeccCCcc----------chhHHHHHHHHHHHHHcCCCCCcCCCCCCCE---EEeCCCc------ceeecCCHHHH
Confidence            999999997532          4567999999999999974322  2334553   2332110      222332210  


Q ss_pred             -----c--EEE--E--------ccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC-h-hhhcCCCc
Q 011351          413 -----E--TIE--I--------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASS  470 (488)
Q Consensus       413 -----~--~~~--~--------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~  470 (488)
                           +  ...  .        .+....+.++.++  +++|+|+++++.++.++... ..+|+++.+++ . ...+.|||
T Consensus       368 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt  447 (466)
T PRK07845        368 DSGEVPARTVMLPLATNPRAKMSGLRDGFVKLFCRPGTGVVIGGVVVAPRASELILPIALAVQNRLTVDDLAQTFTVYPS  447 (466)
T ss_pred             HhCCCceEEEEEecccCchhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCcCCCCC
Confidence                 0  000  0        0112357777764  59999999888887776655 44578888886 3 34578999


Q ss_pred             HHHHHHHHHccCC
Q 011351          471 VEEALEIARAALP  483 (488)
Q Consensus       471 ~~~~~~~~~~~~~  483 (488)
                      +.|++..+++.+.
T Consensus       448 ~~e~~~~~~~~~~  460 (466)
T PRK07845        448 LSGSITEAARRLM  460 (466)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999887644

>PTZ00058 glutathione reductase; Provisional

Probab=100.00  E-value=8.4e-40  Score=335.20  Aligned_cols=408  Identities=16%  Similarity=0.222  Sum_probs=267.5

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---C-CCCCccccCCCCC--------------C-CC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---R-PALTKGYLFPLDK--------------K-PA  109 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~---~-~~l~~~~~~~~~~--------------~-~~  109 (488)
                      ..++||+|||||+||++||..+++.|.   +|+|||++.. ...   + +--+|.++.....              . ..
T Consensus        46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~---~ValIEk~~~-GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~  121 (561)
T PTZ00058         46 RMVYDLIVIGGGSGGMAAARRAARNKA---KVALVEKDYL-GGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSF  121 (561)
T ss_pred             CccccEEEECcCHHHHHHHHHHHHcCC---eEEEEecccc-cccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCcc
Confidence            456899999999999999999999987   8999998742 111   0 1111211110000              0 00


Q ss_pred             CCCCcccccC---CCCCCCCHhHHHHCCCeEEeCCcEEEEeC--------------------CCcEE------EeCCCcE
Q 011351          110 RLPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDI--------------------EKQTL------ITNSGKL  160 (488)
Q Consensus       110 ~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~v~~id~--------------------~~~~v------~~~~g~~  160 (488)
                      +++.......   ........+.+++.+++++.+.. .-+++                    +..+|      ..++|++
T Consensus       122 d~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a-~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~  200 (561)
T PTZ00058        122 NLPLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKG-SLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQV  200 (561)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEE-EEecCCEEEeeccccccccccccccccceeeeccceecCCCcE
Confidence            0000000000   00001122345667999987642 11111                    01112      2346778


Q ss_pred             EEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 011351          161 LKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  240 (488)
Q Consensus       161 i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~  240 (488)
                      +.||+||||||+.|. .|+++|.+  .+  + +   ++.+.+. ..+++++|||+|.+|+|+|..|..+|.+|+++++.+
T Consensus       201 i~ad~lVIATGS~P~-~P~IpG~~--~v--~-t---s~~~~~l-~~pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~  270 (561)
T PTZ00058        201 IEGKNILIAVGNKPI-FPDVKGKE--FT--I-S---SDDFFKI-KEAKRIGIAGSGYIAVELINVVNRLGAESYIFARGN  270 (561)
T ss_pred             EECCEEEEecCCCCC-CCCCCCce--eE--E-E---HHHHhhc-cCCCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecc
Confidence            999999999999986 45555421  11  1 1   2333332 348999999999999999999999999999999999


Q ss_pred             cCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCC-CcEEEcCEEEEeecCccCChhhh--hcCC
Q 011351          241 HLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED-GSTIDADTIVIGIGAKPTVSPFE--RVGL  317 (488)
Q Consensus       241 ~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~-g~~i~~D~vi~a~G~~p~~~~~~--~~gl  317 (488)
                      ++++ .+++++.+.+.+.|++.||++++++.+.+++..+++.+ .+.+.+ ++++++|.|++++|++|+++++.  ..++
T Consensus       271 ~il~-~~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v-~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~  348 (561)
T PTZ00058        271 RLLR-KFDETIINELENDMKKNNINIITHANVEEIEKVKEKNL-TIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNI  348 (561)
T ss_pred             cccc-cCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcE-EEEECCCCEEEECCEEEECcCCCCCccccCccccce
Confidence            9987 47999999999999999999999999999986433333 234434 45799999999999999988763  3444


Q ss_pred             cccCCCEEeCCCCCCCCCCEEEEceecccCCc-----------------------cCCccc-ccccHHHHHHHHHHHHHH
Q 011351          318 NSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK-----------------------MYDRTA-RVEHVDHARQSAQHCIKA  373 (488)
Q Consensus       318 ~~~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~-----------------------~~~~~~-~~~~~~~A~~~g~~~a~~  373 (488)
                      ..++|+|.||+++||+.|||||+|||+..+..                       ..+... .......|..+|+.+|.|
T Consensus       349 ~~~~G~I~VDe~lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~n  428 (561)
T PTZ00058        349 KTPKGYIKVDDNQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADR  428 (561)
T ss_pred             ecCCCeEEECcCCccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHH
Confidence            45578899999999999999999999983321                       111111 234667799999999999


Q ss_pred             HhcCCC--CCCCCCCceeEeccccCCCCcceeeEEeeCCCC---------cEEE----------------EccCCCcEEE
Q 011351          374 LLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG---------ETIE----------------IGNFDPKIAT  426 (488)
Q Consensus       374 i~~~~~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~---------~~~~----------------~~~~~~~~~~  426 (488)
                      |++...  ..+..+|..   .|..+-      +..+|....         ....                .+.....+.+
T Consensus       429 i~g~~~~~~~~~~ip~~---vft~pe------iA~vGlte~eA~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~K  499 (561)
T PTZ00058        429 LFGPFSRTTNYKLIPSV---IFSHPP------IGTIGLSEQEAIDIYGKENVKIYESRFTNLFFSVYDMDPAQKEKTYLK  499 (561)
T ss_pred             HhCCCCcccCCCCCCeE---EeCCch------heeeeCCHHHHHHhcCCCcEEEEEeecchhhhhhhcccccCCCCeEEE
Confidence            997422  234456643   333211      112222110         0000                0011234677


Q ss_pred             EEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC-h-hhhcCCCcHHHHHHHHHccC
Q 011351          427 FWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEEALEIARAAL  482 (488)
Q Consensus       427 ~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~  482 (488)
                      ++++  +++|+|+++++.++.++... ..+|+++.+++ . ..++.|||++|++..++.+|
T Consensus       500 li~~~~t~~ILG~~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~hPt~~e~~~~~~~~~  560 (561)
T PTZ00058        500 LVCVGKEELIKGLHIVGLNADEILQGFAVALKMNATKADFDETIPIHPTAAEEFVTMAPWM  560 (561)
T ss_pred             EEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhcccCCCChHHHHHHhccCC
Confidence            7664  69999999988887776655 55678888886 2 44588999999999988765

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=3.2e-40  Score=337.00  Aligned_cols=399  Identities=23%  Similarity=0.296  Sum_probs=261.3

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCC-CCCCccccCCCC-----CCCCCCCCcccccCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YER-PALTKGYLFPLD-----KKPARLPGFHTCVGSG  121 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~--~~~-~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~  121 (488)
                      .++||+|||||+||++||..|++.|.   +|+|||++..-.  ..+ +--++.++....     .......+........
T Consensus         3 ~~~DvvIIG~GpaG~~AA~~aa~~G~---~V~lie~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~~~~~~   79 (466)
T PRK07818          3 THYDVVVLGAGPGGYVAAIRAAQLGL---KTAVVEKKYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISGEVTFD   79 (466)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCC---eEEEEecCCCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCcCcccC
Confidence            35899999999999999999999987   899999863211  000 000111110000     0000000000000000


Q ss_pred             C--------------CCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEE--eCCC--cEEEeccEEeccCCCCCcCCCCCCC
Q 011351          122 G--------------ERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLI--TNSG--KLLKYGSLIVATGCTASRFPEKIGG  183 (488)
Q Consensus       122 ~--------------~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~--~~~g--~~i~yd~lVlAtG~~~~~~~~~~g~  183 (488)
                      +              .......++..+++.+.+ +..-+  +.+++.  ..+|  +++.||+||||||+.|..+   |+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g-~~~~~--~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~---pg~  153 (466)
T PRK07818         80 YGAAFDRSRKVAEGRVKGVHFLMKKNKITEIHG-YGTFT--DANTLEVDLNDGGTETVTFDNAIIATGSSTRLL---PGT  153 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEc--CCCEEEEEecCCCeeEEEcCEEEEeCCCCCCCC---CCC
Confidence            0              000011122346666543 22222  334443  3444  3689999999999998643   332


Q ss_pred             CC-CcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHc
Q 011351          184 YL-PGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN  262 (488)
Q Consensus       184 ~~-~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~  262 (488)
                      +. ..+.+..   +  .+ .....+++++|||+|.+|+|+|..|+++|.+|+++++.+++++. +++++.+.+.+.|+++
T Consensus       154 ~~~~~v~~~~---~--~~-~~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~~  226 (466)
T PRK07818        154 SLSENVVTYE---E--QI-LSRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPN-EDAEVSKEIAKQYKKL  226 (466)
T ss_pred             CCCCcEEchH---H--Hh-ccccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCc-cCHHHHHHHHHHHHHC
Confidence            22 2233221   1  11 11235789999999999999999999999999999999999985 6899999999999999


Q ss_pred             CcEEEcCCeEEEEEeCCCCcEEEEEeC--CC--cEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCCCCCCC
Q 011351          263 GVKFVKGASIKNLEAGSDGRVAAVKLE--DG--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMP  335 (488)
Q Consensus       263 GV~v~~~~~v~~i~~~~~~~v~~v~l~--~g--~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~  335 (488)
                      ||++++++++++++.. ++.+ .+.+.  +|  +++++|.|++++|++|++++  +++.|+..+ +|+|.||+++||+.|
T Consensus       227 gV~i~~~~~v~~i~~~-~~~~-~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~p  304 (466)
T PRK07818        227 GVKILTGTKVESIDDN-GSKV-TVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYMRTNVP  304 (466)
T ss_pred             CCEEEECCEEEEEEEe-CCeE-EEEEEecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCCcccCCC
Confidence            9999999999999853 3322 34443  56  36999999999999999885  578888764 577999999999999


Q ss_pred             CEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC---CCCCCCceeEeccccCCCCcceeeEEeeCCCC
Q 011351          336 GIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH---TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG  412 (488)
Q Consensus       336 ~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~---~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~  412 (488)
                      +|||+|||+..+.          .+..|..||+.+|.||++....   .+..+|..  ..++.+       +.++|....
T Consensus       305 ~IyAiGD~~~~~~----------l~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~--~~~~p~-------~a~vGlte~  365 (466)
T PRK07818        305 HIYAIGDVTAKLQ----------LAHVAEAQGVVAAETIAGAETLELGDYRMMPRA--TFCQPQ-------VASFGLTEE  365 (466)
T ss_pred             CEEEEeecCCCcc----------cHhHHHHHHHHHHHHHcCCCCCccCccCCCCeE--EECCCC-------eEEEeCCHH
Confidence            9999999996422          4566999999999999975422   34455642  111211       333443221


Q ss_pred             -------cE--EEEc----------cCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC-h-hhhcCC
Q 011351          413 -------ET--IEIG----------NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQA  468 (488)
Q Consensus       413 -------~~--~~~~----------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~  468 (488)
                             +.  ....          .-...+.|+.++  +++|+|+++++.++.++... ..+|+.+.+++ . ..++.|
T Consensus       366 ~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~~~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~h  445 (466)
T PRK07818        366 QAREEGYDVKVAKFPFTANGKAHGLGDPTGFVKLVADAKYGELLGGHLIGPDVSELLPELTLAQKWDLTAEELARNVHTH  445 (466)
T ss_pred             HHHhCCCcEEEEEEECCccchhhhcCCCCeEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCccCC
Confidence                   00  0000          112347777764  59999999888877776655 44578888876 2 345889


Q ss_pred             CcHHHHHHHHHccCCcc
Q 011351          469 SSVEEALEIARAALPVE  485 (488)
Q Consensus       469 ~~~~~~~~~~~~~~~~~  485 (488)
                      ||++|+++.+++.+..+
T Consensus       446 Pt~~e~~~~~~~~~~~~  462 (466)
T PRK07818        446 PTLSEALKEAFHGLAGH  462 (466)
T ss_pred             CchHHHHHHHHHHhhcC
Confidence            99999999999876554

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=100.00  E-value=8.8e-41  Score=336.49  Aligned_cols=308  Identities=20%  Similarity=0.267  Sum_probs=236.8

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHh
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (488)
                      +.+++|||||||+||+.+|..|.+.   +.+|||||+++++.|. |.++. +...... ....           ......
T Consensus         8 ~~~~~vVIvGgG~aGl~~a~~L~~~---~~~ItlI~~~~~~~~~-~~l~~-~~~g~~~-~~~~-----------~~~~~~   70 (424)
T PTZ00318          8 LKKPNVVVLGTGWAGAYFVRNLDPK---KYNITVISPRNHMLFT-PLLPQ-TTTGTLE-FRSI-----------CEPVRP   70 (424)
T ss_pred             CCCCeEEEECCCHHHHHHHHHhCcC---CCeEEEEcCCCCcchh-hhHHH-hcccCCC-hHHh-----------HHHHHH
Confidence            4567999999999999999999654   3489999999998775 54432 2221111 1110           011234


Q ss_pred             HHHHCCCeEEeCCcEEEEeCCCcEEEe----------CCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHH
Q 011351          129 WYKEKGIEMIYQDPVTSIDIEKQTLIT----------NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADAD  198 (488)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~~~v~~----------~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~  198 (488)
                      .+...+++++. .+|++||++++.|++          +++.++.||+||||||+.+. .+.+||.. +..+.++++.++.
T Consensus        71 ~~~~~~~~~i~-~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~-~~~ipG~~-e~~~~~~~~~~a~  147 (424)
T PTZ00318         71 ALAKLPNRYLR-AVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPN-TFNIPGVE-ERAFFLKEVNHAR  147 (424)
T ss_pred             HhccCCeEEEE-EEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcccC-CCCCCCHH-HcCCCCCCHHHHH
Confidence            45567888887 599999999999888          46778999999999999986 35556642 3455677777776


Q ss_pred             HHHHhhh-----------------cCCeEEEECCCHHHHHHHHHHHh--------------CCCcEEEEecCCcCccccc
Q 011351          199 ALISSLE-----------------KAKKVVVVGGGYIGMEVAAAAVG--------------WKLDTTIIFPENHLLQRLF  247 (488)
Q Consensus       199 ~~~~~~~-----------------~~~~vvVvG~G~~g~e~A~~l~~--------------~g~~v~lv~~~~~~l~~~~  247 (488)
                      .+++.+.                 ..++++|||+|++|+|+|..|.+              .+.+|+++++.+++++ .+
T Consensus       148 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~-~~  226 (424)
T PTZ00318        148 GIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLG-SF  226 (424)
T ss_pred             HHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccc-cC
Confidence            6554431                 12489999999999999999976              3678999999999997 48


Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcCCccc-CCCEEe
Q 011351          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQV  326 (488)
Q Consensus       248 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~v  326 (488)
                      ++.+.+.+++.|++.||+++++++|++++.+      .+.+++|+++++|.+|+++|.+|+ .++++++++.+ +|+|.|
T Consensus       227 ~~~~~~~~~~~L~~~gV~v~~~~~v~~v~~~------~v~~~~g~~i~~d~vi~~~G~~~~-~~~~~~~l~~~~~G~I~V  299 (424)
T PTZ00318        227 DQALRKYGQRRLRRLGVDIRTKTAVKEVLDK------EVVLKDGEVIPTGLVVWSTGVGPG-PLTKQLKVDKTSRGRISV  299 (424)
T ss_pred             CHHHHHHHHHHHHHCCCEEEeCCeEEEEeCC------EEEECCCCEEEccEEEEccCCCCc-chhhhcCCcccCCCcEEe
Confidence            9999999999999999999999999999742      477889999999999999999998 68888888765 689999


Q ss_pred             CCCCC-CCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCCCCcee
Q 011351          327 DGQFR-TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFY  389 (488)
Q Consensus       327 d~~~~-t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~~~~~~p~~~  389 (488)
                      |+++| +++|||||+|||+..+....     ...+..|.+||+.+|+||.+.........||.+
T Consensus       300 d~~l~~~~~~~IfAiGD~a~~~~~~~-----~~~~~~A~~qg~~~A~ni~~~l~g~~~~~~~~~  358 (424)
T PTZ00318        300 DDHLRVKPIPNVFALGDCAANEERPL-----PTLAQVASQQGVYLAKEFNNELKGKPMSKPFVY  358 (424)
T ss_pred             CCCcccCCCCCEEEEeccccCCCCCC-----CCchHHHHHHHHHHHHHHHHHhcCCCCCCCCee
Confidence            99999 59999999999998754221     225677999999999999753221113466654

>PLN02546 glutathione reductase

Probab=100.00  E-value=2.3e-40  Score=339.61  Aligned_cols=393  Identities=20%  Similarity=0.256  Sum_probs=270.5

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC------C-CCCCCCCCC------ccccC--------------
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA------Y-APYERPALT------KGYLF--------------  102 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~------~-~~~~~~~l~------~~~~~--------------  102 (488)
                      .++||+|||||+||+.||..+++.|.   +|+|||+..      . ..+.-.-+.      |.++.              
T Consensus        78 ~~yDvvVIG~GpaG~~aA~~aa~~G~---~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~  154 (558)
T PLN02546         78 YDFDLFTIGAGSGGVRASRFASNFGA---SAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGF  154 (558)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhc
Confidence            35899999999999999999999987   899999521      0 000000000      10000              


Q ss_pred             CCC---CCCCCCCCcccc---cCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCc
Q 011351          103 PLD---KKPARLPGFHTC---VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASR  176 (488)
Q Consensus       103 ~~~---~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~  176 (488)
                      ...   ....++......   .-..........+++.+++++.+ +++.+++  ++|.+ +|+.+.||+||||||+.+. 
T Consensus       155 g~~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G-~a~~vd~--~~V~v-~G~~~~~D~LVIATGs~p~-  229 (558)
T PLN02546        155 GWKYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEG-RGKIVDP--HTVDV-DGKLYTARNILIAVGGRPF-  229 (558)
T ss_pred             CcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEccC--CEEEE-CCEEEECCEEEEeCCCCCC-
Confidence            000   000000000000   00000111233455678999985 6666766  45665 5778999999999999986 


Q ss_pred             CCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHH
Q 011351          177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE  256 (488)
Q Consensus       177 ~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~  256 (488)
                      .|+++|     +...   .+++.+......+++++|||+|.+|+|+|..|..++.+|+++++.+++++. +++++...+.
T Consensus       230 ~P~IpG-----~~~v---~~~~~~l~~~~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~-~d~~~~~~l~  300 (558)
T PLN02546        230 IPDIPG-----IEHA---IDSDAALDLPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRG-FDEEVRDFVA  300 (558)
T ss_pred             CCCCCC-----hhhc---cCHHHHHhccccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccc-cCHHHHHHHH
Confidence            455444     2222   233444444456899999999999999999999999999999999998874 8999999999


Q ss_pred             HHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCCCCC
Q 011351          257 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTR  333 (488)
Q Consensus       257 ~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~  333 (488)
                      +.|++.||++++++.+++++..+++.+ .+.+.+++...+|.|++++|++|++++  +++++++.+ +|+|.||+++||+
T Consensus       301 ~~L~~~GV~i~~~~~v~~i~~~~~g~v-~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l~Ts  379 (558)
T PLN02546        301 EQMSLRGIEFHTEESPQAIIKSADGSL-SLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSRTS  379 (558)
T ss_pred             HHHHHCCcEEEeCCEEEEEEEcCCCEE-EEEECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCceeC
Confidence            999999999999999999975444433 455666655569999999999999985  578888876 5779999999999


Q ss_pred             CCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC--CCCCCCCceeEeccccCCCCcceeeEEeeCCC
Q 011351          334 MPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNV  411 (488)
Q Consensus       334 ~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~  411 (488)
                      +|||||+|||+..+.          .+..|..+|+.+|.||++...  ..+..+|+   ..|.++-      +..+|...
T Consensus       380 ~p~IYAaGDv~~~~~----------l~~~A~~~g~~~a~~i~g~~~~~~~~~~vp~---~vft~Pe------ia~VGlte  440 (558)
T PLN02546        380 VPSIWAVGDVTDRIN----------LTPVALMEGGALAKTLFGNEPTKPDYRAVPS---AVFSQPP------IGQVGLTE  440 (558)
T ss_pred             CCCEEEeeccCCCcc----------cHHHHHHHHHHHHHHHcCCCCCcCCCCCCCE---EEeCCch------HhhccCCH
Confidence            999999999997432          455799999999999997542  23455664   3454421      11222211


Q ss_pred             C-------cE------------EEEccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC-h-hhhcC
Q 011351          412 G-------ET------------IEIGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQ  467 (488)
Q Consensus       412 ~-------~~------------~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~  467 (488)
                      .       ++            ...+.....+.++.++  +++|+|+++++.++.++... ..+|+++.+++ . ..++.
T Consensus       441 ~eA~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~t~~ILGa~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~  520 (558)
T PLN02546        441 EQAIEEYGDVDVFTANFRPLKATLSGLPDRVFMKLIVCAKTNKVLGVHMCGEDAPEIIQGFAVAVKAGLTKADFDATVGI  520 (558)
T ss_pred             HHHHHcCCCeEEEEEecccchhhhhCCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccC
Confidence            1       00            0011112347777764  59999999988888776655 55678888886 2 44588


Q ss_pred             CCcHHHHHHHHH
Q 011351          468 ASSVEEALEIAR  479 (488)
Q Consensus       468 ~~~~~~~~~~~~  479 (488)
                      |||+.|.+..+.
T Consensus       521 hPT~~E~~~~~~  532 (558)
T PLN02546        521 HPTAAEEFVTMR  532 (558)
T ss_pred             CCChHHHHHHHh
Confidence            999999998876

>PRK13748 putative mercuric reductase; Provisional

Probab=100.00  E-value=1.1e-39  Score=341.21  Aligned_cols=397  Identities=19%  Similarity=0.253  Sum_probs=268.2

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---C-CCCCccccCC------CCCCCCCCCCcccccC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---R-PALTKGYLFP------LDKKPARLPGFHTCVG  119 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~---~-~~l~~~~~~~------~~~~~~~~~~~~~~~~  119 (488)
                      ..+||+|||||+||++||..|++.|.   +|+|||++. ....   + +--++.++..      ....... .+......
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~G~---~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~-~g~~~~~~  171 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQGA---RVTLIERGT-IGGTCVNVGCVPSKIMIRAAHIAHLRRESPFD-GGIAATVP  171 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCC---eEEEEecCc-ceeeccccCccccHHHHHHHHHHHHHhccccc-CCccCCCC
Confidence            46899999999999999999999987   899999873 2111   0 0001110000      0000000 01000000


Q ss_pred             C-C--------------CC-CCCHhHHHHC-CCeEEeCCcEEEEeCCCcEEEeCCCc--EEEeccEEeccCCCCCcCCCC
Q 011351          120 S-G--------------GE-RQTPEWYKEK-GIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEK  180 (488)
Q Consensus       120 ~-~--------------~~-~~~~~~~~~~-~i~~~~~~~v~~id~~~~~v~~~~g~--~i~yd~lVlAtG~~~~~~~~~  180 (488)
                      . .              .. ......+++. +++++.+ ++..++.....|.+.+|+  ++.||+||||||+.|. .|++
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~-~p~i  249 (561)
T PRK13748        172 TIDRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHG-EARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPA-VPPI  249 (561)
T ss_pred             ccCHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEE-EEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCC-CCCC
Confidence            0 0              00 0011223444 7888875 677777766667666663  6999999999999986 4555


Q ss_pred             CCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHH
Q 011351          181 IGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ  260 (488)
Q Consensus       181 ~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~  260 (488)
                      +|.+...  .+..    .........+++++|||+|.+|+|+|..|.++|.+|+++++. .+++. +++++.+.+.+.|+
T Consensus       250 ~g~~~~~--~~~~----~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~-~~l~~-~d~~~~~~l~~~l~  321 (561)
T PRK13748        250 PGLKETP--YWTS----TEALVSDTIPERLAVIGSSVVALELAQAFARLGSKVTILARS-TLFFR-EDPAIGEAVTAAFR  321 (561)
T ss_pred             CCCCccc--eEcc----HHHhhcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC-ccccc-cCHHHHHHHHHHHH
Confidence            5532211  2211    111222235789999999999999999999999999999985 56654 79999999999999


Q ss_pred             HcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCCCCCCCCE
Q 011351          261 QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGI  337 (488)
Q Consensus       261 ~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~I  337 (488)
                      +.||++++++.+++++.. ++.+ .+.+.++ ++++|.|++++|++||+++  +++.+++.+ +|+|.||+++||++|||
T Consensus       322 ~~gI~i~~~~~v~~i~~~-~~~~-~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~~~I  398 (561)
T PRK13748        322 AEGIEVLEHTQASQVAHV-DGEF-VLTTGHG-ELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRTSVPHI  398 (561)
T ss_pred             HCCCEEEcCCEEEEEEec-CCEE-EEEecCC-eEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCcccCCCCE
Confidence            999999999999999754 3332 3555555 6999999999999999975  578888875 57799999999999999


Q ss_pred             EEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeEeccccCCCCcceeeEEeeCCCC----
Q 011351          338 FAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG----  412 (488)
Q Consensus       338 fa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~----  412 (488)
                      ||+|||+..+.          ....|..+|+.+|.||++... .++...|.  ...++.+       +..+|....    
T Consensus       399 yA~GD~~~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~--~~~~~p~-------~a~vGlte~~a~~  459 (561)
T PRK13748        399 YAAGDCTDQPQ----------FVYVAAAAGTRAAINMTGGDAALDLTAMPA--VVFTDPQ-------VATVGYSEAEAHH  459 (561)
T ss_pred             EEeeecCCCcc----------chhHHHHHHHHHHHHHcCCCcccCCCCCCe--EEEccCC-------ceeeeCCHHHHHH
Confidence            99999998643          334588899999999986432 22344553  2222221       233343221    


Q ss_pred             ---cE--EE----------EccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC-h-hhhcCCCcHH
Q 011351          413 ---ET--IE----------IGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVE  472 (488)
Q Consensus       413 ---~~--~~----------~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~  472 (488)
                         +.  ..          .......+.|++++  +++|+|+++++.++.++... ..+|+++.+++ . ..++.|||+.
T Consensus       460 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~  539 (561)
T PRK13748        460 DGIETDSRTLTLDNVPRALANFDTRGFIKLVIEEGSGRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMV  539 (561)
T ss_pred             cCCCeEEEEEecccCchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcccccCCchH
Confidence               00  00          01112457888775  69999999877777766544 55678888886 2 3357899999


Q ss_pred             HHHHHHHccCC
Q 011351          473 EALEIARAALP  483 (488)
Q Consensus       473 ~~~~~~~~~~~  483 (488)
                      |++..+++.+.
T Consensus       540 e~~~~~~~~~~  550 (561)
T PRK13748        540 EGLKLAAQTFN  550 (561)
T ss_pred             HHHHHHHHHhh
Confidence            99999987654

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=100.00  E-value=1.2e-39  Score=330.54  Aligned_cols=393  Identities=17%  Similarity=0.210  Sum_probs=262.5

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC-CCC---CCCC-CccccCCCCCCCCCCCCcccc---cCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA-PYE---RPAL-TKGYLFPLDKKPARLPGFHTC---VGSG  121 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~-~~~---~~~l-~~~~~~~~~~~~~~~~~~~~~---~~~~  121 (488)
                      +++||+|||||+||++||..|++.|.   +|+|||+++.. ...   +... ++.++.... ...++......   ....
T Consensus         2 ~~~dvvVIG~GpaG~~aA~~l~~~g~---~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~-~~~~~~~~~~~~~~~~~~   77 (438)
T PRK07251          2 LTYDLIVIGFGKAGKTLAAKLASAGK---KVALVEESKAMYGGTCINIGCIPTKTLLVAAE-KNLSFEQVMATKNTVTSR   77 (438)
T ss_pred             CccCEEEECCCHHHHHHHHHHHhCCC---EEEEEecCCcccceeeecCccccchHhhhhhh-cCCCHHHHHHHHHHHHHH
Confidence            36899999999999999999999987   89999998642 111   0001 111111000 00000000000   0000


Q ss_pred             CCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCC---CcEEEeccEEeccCCCCCcCCCCCCC-CCCcEEEecCHHHH
Q 011351          122 GERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNS---GKLLKYGSLIVATGCTASRFPEKIGG-YLPGVHYIRDVADA  197 (488)
Q Consensus       122 ~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~---g~~i~yd~lVlAtG~~~~~~~~~~g~-~~~gv~~~~~~~~~  197 (488)
                      ......+.+.+.+++++.+ ++..+  ++++|.+.+   ..++.||+||||||+.+.. |+++|. +.+++++      +
T Consensus        78 ~~~~~~~~~~~~gV~~~~g-~~~~~--~~~~v~v~~~~~~~~~~~d~vViATGs~~~~-p~i~G~~~~~~v~~------~  147 (438)
T PRK07251         78 LRGKNYAMLAGSGVDLYDA-EAHFV--SNKVIEVQAGDEKIELTAETIVINTGAVSNV-LPIPGLADSKHVYD------S  147 (438)
T ss_pred             HHHHHHHHHHhCCCEEEEE-EEEEc--cCCEEEEeeCCCcEEEEcCEEEEeCCCCCCC-CCCCCcCCCCcEEc------h
Confidence            0011224456778998875 34333  456666543   2469999999999999864 555553 2233332      3


Q ss_pred             HHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 011351          198 DALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  277 (488)
Q Consensus       198 ~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~  277 (488)
                      ..+......+++++|||+|.+|+|+|..+++.|.+|+++++.++++++ .++++.+.+.+.+++.||++++++++++++.
T Consensus       148 ~~~~~~~~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~  226 (438)
T PRK07251        148 TGIQSLETLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR-EEPSVAALAKQYMEEDGITFLLNAHTTEVKN  226 (438)
T ss_pred             HHHhcchhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC-CCHHHHHHHHHHHHHcCCEEEcCCEEEEEEe
Confidence            333333346789999999999999999999999999999999999886 6888999999999999999999999999985


Q ss_pred             CCCCcEEEEEeCCCcEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCcc
Q 011351          278 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRT  354 (488)
Q Consensus       278 ~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~  354 (488)
                      + ++.+ .+ ..+|+++++|.|++|+|.+|+.+.  ++..++..+ +|++.||+++||+.|||||+|||+..+.      
T Consensus       227 ~-~~~v-~v-~~~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~~~t~~~~IyaiGD~~~~~~------  297 (438)
T PRK07251        227 D-GDQV-LV-VTEDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYCQTSVPGVFAVGDVNGGPQ------  297 (438)
T ss_pred             c-CCEE-EE-EECCeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCCCcc------
Confidence            3 3333 23 345678999999999999999875  445666654 5779999999999999999999997533      


Q ss_pred             cccccHHHHHHHHHHHHHHHhcCCC---CCCCCCCceeEeccccCCCCcceeeEEeeCCCC-------cEE----EEc--
Q 011351          355 ARVEHVDHARQSAQHCIKALLSAQT---HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETI----EIG--  418 (488)
Q Consensus       355 ~~~~~~~~A~~~g~~~a~~i~~~~~---~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~-------~~~----~~~--  418 (488)
                          ....|..+++.++.++.+...   ..+..+|..  ..++.+       +...|....       +..    ...  
T Consensus       298 ----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~p~-------ia~vGlte~~a~~~g~~~~~~~~~~~~~  364 (438)
T PRK07251        298 ----FTYISLDDFRIVFGYLTGDGSYTLEDRGNVPTT--MFITPP-------LSQVGLTEKEAKEAGLPYAVKELLVAAM  364 (438)
T ss_pred             ----cHhHHHHHHHHHHHHHcCCCCccccccCCCCEE--EECCCc-------eEeeeCCHHHHHhcCCCeEEEEEECCcc
Confidence                223477888999988886432   123345543  222221       223332211       000    000  


Q ss_pred             ------cCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC-h-hhhcCCCcHHHHHHHHH
Q 011351          419 ------NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEEALEIAR  479 (488)
Q Consensus       419 ------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~  479 (488)
                            .....+.|++++  +++|+|+++++.++.++... ..+|+++.+++ . ..++.|||++|++..+.
T Consensus       365 ~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~  436 (438)
T PRK07251        365 PRAHVNNDLRGAFKVVVNTETKEILGATLFGEGSQEIINLITMAMDNKIPYTYFKKQIFTHPTMAENLNDLF  436 (438)
T ss_pred             hhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCChHHHHHHHh
Confidence                  001336777764  59999999888887776655 44578888876 2 44578999999998763

>PRK07846 mycothione reductase; Reviewed

Probab=100.00  E-value=7.7e-39  Score=324.12  Aligned_cols=394  Identities=19%  Similarity=0.250  Sum_probs=265.9

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCC-CCCCcccc--------------CCC--CCCCCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YER-PALTKGYL--------------FPL--DKKPARL  111 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~--~~~-~~l~~~~~--------------~~~--~~~~~~~  111 (488)
                      ++|++|||||++|.+||..  +.|.   +|+|||++..-.  -++ +--+|.++              +..  .....++
T Consensus         1 ~yD~vVIG~G~~g~~aa~~--~~G~---~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~   75 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDER--FADK---RIAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRW   75 (451)
T ss_pred             CCCEEEECCCHHHHHHHHH--HCCC---eEEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCH
Confidence            3799999999999998865  4565   899999864211  000 11111100              000  0000000


Q ss_pred             CCccccc---CCCCCC-CCHhH-HHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCC
Q 011351          112 PGFHTCV---GSGGER-QTPEW-YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP  186 (488)
Q Consensus       112 ~~~~~~~---~~~~~~-~~~~~-~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~  186 (488)
                      .......   ...... ....+ ++..+++++.+ +..-+  +.++|++.+|+++.||+||||||+.|. .|++++.+..
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~a~~~--~~~~V~v~~g~~~~~d~lViATGs~p~-~p~i~g~~~~  151 (451)
T PRK07846         76 PDIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRG-HARFI--GPKTLRTGDGEEITADQVVIAAGSRPV-IPPVIADSGV  151 (451)
T ss_pred             HHHHHHHHHHHHHHhccchhhhhhhhCCcEEEEE-EEEEe--cCCEEEECCCCEEEeCEEEEcCCCCCC-CCCCCCcCCc
Confidence            0000000   000001 12233 56778999886 34333  568898888888999999999999986 4555553322


Q ss_pred             cEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEE
Q 011351          187 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF  266 (488)
Q Consensus       187 gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v  266 (488)
                      .+   .+..+...   ....+++++|||+|.+|+|+|..|.++|.+|+++++.+++++. +++++.+.+.+.+ +.||++
T Consensus       152 ~~---~~~~~~~~---l~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~-~d~~~~~~l~~l~-~~~v~i  223 (451)
T PRK07846        152 RY---HTSDTIMR---LPELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRH-LDDDISERFTELA-SKRWDV  223 (451)
T ss_pred             cE---EchHHHhh---hhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-cCHHHHHHHHHHH-hcCeEE
Confidence            22   22233322   2235789999999999999999999999999999999999864 7889888887655 568999


Q ss_pred             EcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhh--hhcCCccc-CCCEEeCCCCCCCCCCEEEEcee
Q 011351          267 VKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDV  343 (488)
Q Consensus       267 ~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~--~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~  343 (488)
                      ++++++++++.. ++.+ .+.+.+|+++++|.|++|+|++|+++++  ++.+++.+ +|+|.||+++||+.|||||+|||
T Consensus       224 ~~~~~v~~i~~~-~~~v-~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~~Ts~p~IyA~GD~  301 (451)
T PRK07846        224 RLGRNVVGVSQD-GSGV-TLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQRTSAEGVFALGDV  301 (451)
T ss_pred             EeCCEEEEEEEc-CCEE-EEEECCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCCcccCCCCEEEEeec
Confidence            999999999854 3333 4677788899999999999999999884  67888875 67799999999999999999999


Q ss_pred             cccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC---CCCCCCCceeEeccccCCCCcceeeEEeeCCCC-------c
Q 011351          344 AAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT---HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------E  413 (488)
Q Consensus       344 a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~---~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~-------~  413 (488)
                      +..+.          ....|.+||+.+++||++...   ..+..+|...   |..+-      +..+|....       +
T Consensus       302 ~~~~~----------l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~i---f~~p~------ia~vGlte~~a~~~g~~  362 (451)
T PRK07846        302 SSPYQ----------LKHVANHEARVVQHNLLHPDDLIASDHRFVPAAV---FTHPQ------IASVGLTENEARAAGLD  362 (451)
T ss_pred             CCCcc----------ChhHHHHHHHHHHHHHcCCCCccccCCCCCCeEE---ECCCC------cEeEeCCHHHHHhcCCC
Confidence            97532          234588999999999986422   2345566532   22110      223343221       0


Q ss_pred             EEE-------Ec-----cCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC-hhh-h-cCCCcHHHHH
Q 011351          414 TIE-------IG-----NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-KAK-L-QQASSVEEAL  475 (488)
Q Consensus       414 ~~~-------~~-----~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~-~-~~~~~~~~~~  475 (488)
                      +..       ..     .-...+.++.++  +++|+|+++++.++.++... ..+|+++.+++ ... . ..|||++|++
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~hPt~~e~~  442 (451)
T PRK07846        363 ITVKVQNYGDVAYGWAMEDTTGFVKLIADRDTGRLLGAHIIGPQASTLIQPLIQAMSFGLDAREMARGQYWIHPALPEVV  442 (451)
T ss_pred             EEEEEEecCcchhhhhCCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCCCccCCcHHHHH
Confidence            000       00     011346777764  59999999888877776655 45578888886 333 3 5899999999


Q ss_pred             HHHHccC
Q 011351          476 EIARAAL  482 (488)
Q Consensus       476 ~~~~~~~  482 (488)
                      +.+++.+
T Consensus       443 ~~a~~~~  449 (451)
T PRK07846        443 ENALLGL  449 (451)
T ss_pred             HHHHHhc
Confidence            9998754

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=100.00  E-value=1.7e-38  Score=321.55  Aligned_cols=371  Identities=21%  Similarity=0.311  Sum_probs=274.5

Q ss_pred             HHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCC-HhHHHHCCCeEEeCCcE
Q 011351           65 YAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQT-PEWYKEKGIEMIYQDPV  143 (488)
Q Consensus        65 ~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~v  143 (488)
                      +||.+|++.+. +.+|||||+++.+.|....++. +...........           .... .+++.+.+++++.+++|
T Consensus         1 saA~~l~~~~~-~~~Vtlid~~~~~~~~~~~l~~-~~~g~~~~~~~~-----------~~~~~~~~~~~~gv~~~~~~~V   67 (427)
T TIGR03385         1 SAASRVRRLDK-ESDIIVFEKTEDVSFANCGLPY-VIGGVIDDRNKL-----------LAYTPEVFIKKRGIDVKTNHEV   67 (427)
T ss_pred             CHHHHHHhhCC-CCcEEEEEcCCceeEEcCCCCe-EeccccCCHHHc-----------ccCCHHHHHHhcCCeEEecCEE
Confidence            47899998753 6799999999988776433432 111111100000           1122 34558899999888899


Q ss_pred             EEEeCCCcEEEeCC---CcEEE--eccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhh--hcCCeEEEECCC
Q 011351          144 TSIDIEKQTLITNS---GKLLK--YGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL--EKAKKVVVVGGG  216 (488)
Q Consensus       144 ~~id~~~~~v~~~~---g~~i~--yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~--~~~~~vvVvG~G  216 (488)
                      +.+|++++++.+.+   ++.+.  ||+||||||+.+. .+.++|.+.++++..++..++..+.+.+  ..+++++|||+|
T Consensus        68 ~~id~~~~~v~~~~~~~~~~~~~~yd~lIiATG~~p~-~~~i~G~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG  146 (427)
T TIGR03385        68 IEVNDERQTVVVRNNKTNETYEESYDYLILSPGASPI-VPNIEGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGG  146 (427)
T ss_pred             EEEECCCCEEEEEECCCCCEEecCCCEEEECCCCCCC-CCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCeEEEECCC
Confidence            99999988887753   35677  9999999999986 4566776667788888888887777665  457899999999


Q ss_pred             HHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEc
Q 011351          217 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA  296 (488)
Q Consensus       217 ~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~  296 (488)
                      .+|+|+|..|++.|.+|+++++.+.++...+++++.+.+.+.+++.||++++++.+++++.+  +.+  +.+.+|+++++
T Consensus       147 ~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~--~~~--v~~~~g~~i~~  222 (427)
T TIGR03385       147 YIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGE--ERV--KVFTSGGVYQA  222 (427)
T ss_pred             HHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEecC--CCE--EEEcCCCEEEe
Confidence            99999999999999999999999888655678899999999999999999999999999743  332  46678889999


Q ss_pred             CEEEEeecCccCChhhhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 011351          297 DTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  375 (488)
Q Consensus       297 D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~  375 (488)
                      |.+++++|.+|+.++++++++..+ +|+|.||++++|+.|+|||+|||+..+....+.......+..|.+||+.+|+||.
T Consensus       223 D~vi~a~G~~p~~~~l~~~gl~~~~~G~i~vd~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~  302 (427)
T TIGR03385       223 DMVILATGIKPNSELAKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIA  302 (427)
T ss_pred             CEEEECCCccCCHHHHHhcCcccCCCCCEEECCCcEeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhc
Confidence            999999999999999999998875 5789999999999999999999998766544433334467789999999999998


Q ss_pred             cCCCCCCCCC-CceeEeccccCCCCcceeeEEeeCCCC-------c--EEEEc---------cCCCcEEEEEEE--CCEE
Q 011351          376 SAQTHTYDYL-PYFYSRVFEYEGSPRKVWWQFFGDNVG-------E--TIEIG---------NFDPKIATFWID--SGKL  434 (488)
Q Consensus       376 ~~~~~~~~~~-p~~~~~~~~~~g~~~~~~~~~~g~~~~-------~--~~~~~---------~~~~~~~~~~~~--~~~~  434 (488)
                      +. ...+... +..++..+++.       +..+|....       +  .....         +....+.++.++  +++|
T Consensus       303 g~-~~~~~~~~~~~~~~~~~~~-------~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~i  374 (427)
T TIGR03385       303 GN-DIEFKGVLGTNITKFFDLT-------IASTGVTENEAKKLNIDYKTVFVKAKTHANYYPGNSPLHLKLIYEKDTRRI  374 (427)
T ss_pred             CC-CCCCCCcceeeEEEEcCeE-------EEEecCCHHHHHHCCCCeEEEEEecCCCCCcCCCCceEEEEEEEECCCCeE
Confidence            74 3444332 33334444432       445554321       0  11110         011236777774  5999


Q ss_pred             EEEEeecCC-hHHhh-HHHHHHhcCCCCC
Q 011351          435 KGVLVESGS-PEEFQ-LLPTLARSQPFVD  461 (488)
Q Consensus       435 ~g~~~~~~~-~~~~~-~~~~~~~~~~~~~  461 (488)
                      +|+++++.+ +.++. .+..+|+++.+++
T Consensus       375 lG~~~~g~~~a~e~i~~~~~ai~~~~t~~  403 (427)
T TIGR03385       375 LGAQAVGKEGADKRIDVLAAAIMAGLTVK  403 (427)
T ss_pred             EEEEEEccccHHHHHHHHHHHHHCCCCHH
Confidence            999987777 66655 4455678887776

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=100.00  E-value=2.2e-39  Score=329.15  Aligned_cols=393  Identities=19%  Similarity=0.256  Sum_probs=263.2

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHc-CCCCCcEEEEcCC--------CCCCCC---C-CCCCccccCCC-----CCCCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKE--------AYAPYE---R-PALTKGYLFPL-----DKKPARL  111 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~-g~~~~~V~lie~~--------~~~~~~---~-~~l~~~~~~~~-----~~~~~~~  111 (488)
                      +++||+|||||++|..||..+++. |.   +|+|||++        ......   + +--+|.++...     ......+
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~g~---~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~   78 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLYKK---RVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGF   78 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhcCC---EEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhcc
Confidence            468999999999999999999996 66   89999974        111110   0 00011111000     0000000


Q ss_pred             CCcc--------cccC---------CCCCCCCHhHHHH-CCCeEEeCCcEEEEeCCCcEEEeCC--------CcEEEecc
Q 011351          112 PGFH--------TCVG---------SGGERQTPEWYKE-KGIEMIYQDPVTSIDIEKQTLITNS--------GKLLKYGS  165 (488)
Q Consensus       112 ~~~~--------~~~~---------~~~~~~~~~~~~~-~~i~~~~~~~v~~id~~~~~v~~~~--------g~~i~yd~  165 (488)
                       ++.        ++..         ........+++++ .+++++.+ +..-  .+.++|.+.+        .+.+.||+
T Consensus        79 -gi~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G-~a~f--~~~~~v~V~~~~~~~~~~~~~~~~d~  154 (486)
T TIGR01423        79 -GWEFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLG-WGAL--EDKNVVLVRESADPKSAVKERLQAEH  154 (486)
T ss_pred             -CeeccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEE-EEEE--ccCCEEEEeeccCCCCCcceEEECCE
Confidence             000        0000         0000011123444 38998886 3332  3356665531        24699999


Q ss_pred             EEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhC---CCcEEEEecCCcC
Q 011351          166 LIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPENHL  242 (488)
Q Consensus       166 lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~---g~~v~lv~~~~~~  242 (488)
                      ||||||+.|. .|+++|.+  .+   .+..+   .......+++++|||+|.+|+|+|..+..+   |.+|+++++.+++
T Consensus       155 lIIATGs~p~-~p~i~G~~--~~---~~~~~---~~~~~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~i  225 (486)
T TIGR01423       155 ILLATGSWPQ-MLGIPGIE--HC---ISSNE---AFYLDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMI  225 (486)
T ss_pred             EEEecCCCCC-CCCCCChh--he---echhh---hhccccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcc
Confidence            9999999986 45544421  12   22222   222224579999999999999999877655   8999999999999


Q ss_pred             cccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChh--hhhcCCccc
Q 011351          243 LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS  320 (488)
Q Consensus       243 l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~  320 (488)
                      ++. +++++.+.+.+.|++.||++++++.+++++..+++. ..+.+.+|+++++|.|++++|++|++++  +++.+++.+
T Consensus       226 l~~-~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~-~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~  303 (486)
T TIGR01423       226 LRG-FDSTLRKELTKQLRANGINIMTNENPAKVTLNADGS-KHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELT  303 (486)
T ss_pred             ccc-cCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCce-EEEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCceEC
Confidence            974 899999999999999999999999999998543332 3567778889999999999999999886  467888775


Q ss_pred             -CCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCCCCceeEeccccCC
Q 011351          321 -VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEG  397 (488)
Q Consensus       321 -~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~--~~~~~p~~~~~~~~~~g  397 (488)
                       +|+|.||+++||+.|||||+|||+..+.          ....|..||+.++.||++....  .+..+|.   ..|..+-
T Consensus       304 ~~G~I~Vd~~l~Ts~~~IyA~GDv~~~~~----------l~~~A~~qG~~aa~ni~g~~~~~~~~~~vp~---~vft~pe  370 (486)
T TIGR01423       304 KKGAIQVDEFSRTNVPNIYAIGDVTDRVM----------LTPVAINEGAAFVDTVFGNKPRKTDHTRVAS---AVFSIPP  370 (486)
T ss_pred             CCCCEecCCCCcCCCCCEEEeeecCCCcc----------cHHHHHHHHHHHHHHHhCCCCcccCCCCCCE---EEeCCCc
Confidence             5779999999999999999999997432          3445899999999999975332  3344664   3333211


Q ss_pred             CCcceeeEEeeCCCC-------cEE------------EEccC-CCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHH
Q 011351          398 SPRKVWWQFFGDNVG-------ETI------------EIGNF-DPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLA  454 (488)
Q Consensus       398 ~~~~~~~~~~g~~~~-------~~~------------~~~~~-~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~  454 (488)
                            +..+|....       .+.            ..+.. ...+.++.++  +++|+|+++++.++.++... ..+|
T Consensus       371 ------ia~vGlte~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~~~~iLGa~ivg~~a~elI~~~~~ai  444 (486)
T TIGR01423       371 ------IGTCGLVEEDAAKKFEKVAVYESSFTPLMHNISGSKYKKFVAKIVTNHADGTVLGVHLLGDSSPEIIQAVGICL  444 (486)
T ss_pred             ------eEEeeCCHHHHHhcCCceEEEEEeeCchhhhhccCccCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHH
Confidence                  222332211       000            00111 1246777764  58999999888887776655 4557


Q ss_pred             hcCCCCC-h-hhhcCCCcHHHHHHHHH
Q 011351          455 RSQPFVD-K-AKLQQASSVEEALEIAR  479 (488)
Q Consensus       455 ~~~~~~~-~-~~~~~~~~~~~~~~~~~  479 (488)
                      +++.+++ . ..++.|||++|++..+.
T Consensus       445 ~~~~t~~dl~~~~~~hPt~sE~~~~~~  471 (486)
T TIGR01423       445 KLNAKISDFYNTIGVHPTSAEELCSMR  471 (486)
T ss_pred             HcCCCHHHHhhcccCCCCcHHHHHhhc
Confidence            8888886 3 44589999999999885

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK14727 putative mercuric reductase; Provisional

Probab=100.00  E-value=3.7e-39  Score=329.46  Aligned_cols=399  Identities=18%  Similarity=0.199  Sum_probs=263.9

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---C-CCCCccccC--------CCCC---CCCCCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---R-PALTKGYLF--------PLDK---KPARLPG  113 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~---~-~~l~~~~~~--------~~~~---~~~~~~~  113 (488)
                      +.++|++|||||+||+++|..|++.|.   +|+|||+++.....   + +--++.++.        ....   .....+.
T Consensus        14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~---~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~   90 (479)
T PRK14727         14 KLQLHVAIIGSGSAAFAAAIKAAEHGA---RVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPS   90 (479)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCC---eEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCc
Confidence            346899999999999999999999987   89999987432211   0 000110000        0000   0000000


Q ss_pred             ccc--cc------CCCCC-CCCHhHHHHC-CCeEEeCCcEEEEeCCCcEEEeCCCc--EEEeccEEeccCCCCCcCCCCC
Q 011351          114 FHT--CV------GSGGE-RQTPEWYKEK-GIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKI  181 (488)
Q Consensus       114 ~~~--~~------~~~~~-~~~~~~~~~~-~i~~~~~~~v~~id~~~~~v~~~~g~--~i~yd~lVlAtG~~~~~~~~~~  181 (488)
                      +..  ..      ..... ......++.. +++++.+ .+.-++.....|.+.+|+  ++.||+||||||+.|. .|+++
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G-~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~-~p~i~  168 (479)
T PRK14727         91 IDRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKG-YARFKDGNTLVVRLHDGGERVLAADRCLIATGSTPT-IPPIP  168 (479)
T ss_pred             cCHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEE-EEEEecCCEEEEEeCCCceEEEEeCEEEEecCCCCC-CCCCC
Confidence            000  00      00000 0112233333 7888875 444455444455556664  6999999999999986 45555


Q ss_pred             CCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHH
Q 011351          182 GGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ  261 (488)
Q Consensus       182 g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~  261 (488)
                      |......  ...   .+.+ .....+++++|||+|.+|+|+|..|.++|.+|+++++. .+++. +++++.+.+.+.|++
T Consensus       169 G~~~~~~--~~~---~~~l-~~~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~-~~l~~-~d~~~~~~l~~~L~~  240 (479)
T PRK14727        169 GLMDTPY--WTS---TEAL-FSDELPASLTVIGSSVVAAEIAQAYARLGSRVTILARS-TLLFR-EDPLLGETLTACFEK  240 (479)
T ss_pred             CcCccce--ecc---hHHh-ccccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC-CCCCc-chHHHHHHHHHHHHh
Confidence            5322111  111   1111 11234689999999999999999999999999999875 66664 789999999999999


Q ss_pred             cCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCCCCCCCCEE
Q 011351          262 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIF  338 (488)
Q Consensus       262 ~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~If  338 (488)
                      .||++++++++++++..++ .+ .+.+.++ ++++|.|++|+|+.||+.+  ++..+++.+ +|+|.||+++||++||||
T Consensus       241 ~GV~i~~~~~V~~i~~~~~-~~-~v~~~~g-~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~~Ts~~~Iy  317 (479)
T PRK14727        241 EGIEVLNNTQASLVEHDDN-GF-VLTTGHG-ELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMETSAPDIY  317 (479)
T ss_pred             CCCEEEcCcEEEEEEEeCC-EE-EEEEcCC-eEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCCeecCCCCEE
Confidence            9999999999999975433 22 3555555 5999999999999999885  567788765 577999999999999999


Q ss_pred             EEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeEeccccCCCCcceeeEEeeCCCCc----
Q 011351          339 AIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE----  413 (488)
Q Consensus       339 a~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~----  413 (488)
                      |+|||+..+.          ....|..+|+.+|.||++... .++...|+.  ..++.+       +..+|....+    
T Consensus       318 A~GD~~~~~~----------~~~~A~~~G~~aa~~i~g~~~~~~~~~~p~~--~~~~p~-------ia~vGlte~~a~~~  378 (479)
T PRK14727        318 AAGDCSDLPQ----------FVYVAAAAGSRAGINMTGGNATLDLSAMPAV--IFTDPQ-------VATVGLSEAKAHLS  378 (479)
T ss_pred             EeeecCCcch----------hhhHHHHHHHHHHHHHcCCCcccccccCCcE--EEecCc-------eeeeeCCHHHHHHc
Confidence            9999997643          334588899999999996432 223445542  222221       2333432210    


Q ss_pred             ---E--EE----------EccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC-h-hhhcCCCcHHH
Q 011351          414 ---T--IE----------IGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEE  473 (488)
Q Consensus       414 ---~--~~----------~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~  473 (488)
                         .  ..          .......+.|++++  +++|+|+++++.++.++... ..+|+.+.+++ . ...+.|||++|
T Consensus       379 g~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~E  458 (479)
T PRK14727        379 GIETISRVLTMENVPRALANFETDGFIKLVAEEGTRKLIGAQILAHEGGELIQSAALAIHNRMTVEELADQLFPYLTMVE  458 (479)
T ss_pred             CCceEEEEEEcccCchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCCccCCChHH
Confidence               0  00          01112347777774  59999999888777776655 44578888876 3 33588999999


Q ss_pred             HHHHHHccC
Q 011351          474 ALEIARAAL  482 (488)
Q Consensus       474 ~~~~~~~~~  482 (488)
                      ++..+++.+
T Consensus       459 ~~~~~~~~~  467 (479)
T PRK14727        459 GLKLCAQTF  467 (479)
T ss_pred             HHHHHHHhh
Confidence            999998654

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=100.00  E-value=7.7e-39  Score=331.99  Aligned_cols=307  Identities=19%  Similarity=0.252  Sum_probs=218.9

Q ss_pred             CcEEEe-CCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHh
Q 011351          150 KQTLIT-NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVG  228 (488)
Q Consensus       150 ~~~v~~-~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~  228 (488)
                      .++|.+ .+++++.||+||||||+.|.. |+.++.+.+++++.   .+...+   ...+++++|||+|.+|+|+|..|..
T Consensus       261 ~~~v~v~~~g~~i~ad~lIIATGS~P~~-P~~~~~~~~~V~ts---~d~~~l---~~lpk~VvIVGgG~iGvE~A~~l~~  333 (659)
T PTZ00153        261 KNTIKSEKSGKEFKVKNIIIATGSTPNI-PDNIEVDQKSVFTS---DTAVKL---EGLQNYMGIVGMGIIGLEFMDIYTA  333 (659)
T ss_pred             CCeEEEccCCEEEECCEEEEcCCCCCCC-CCCCCCCCCcEEeh---HHhhhh---hhcCCceEEECCCHHHHHHHHHHHh
Confidence            345544 366789999999999999863 44333333345443   333332   2347899999999999999999999


Q ss_pred             CCCcEEEEecCCcCcccccCHHHHHHHHHHH-HHcCcEEEcCCeEEEEEeCCCCcEEEEEeCC-------C--------c
Q 011351          229 WKLDTTIIFPENHLLQRLFTPSLAQRYEQLY-QQNGVKFVKGASIKNLEAGSDGRVAAVKLED-------G--------S  292 (488)
Q Consensus       229 ~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l-~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~-------g--------~  292 (488)
                      +|.+|+++++.+++++. +++++.+.+.+.+ ++.||++++++.|++++..+++....+.+.+       +        +
T Consensus       334 ~G~eVTLIe~~~~ll~~-~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~  412 (659)
T PTZ00153        334 LGSEVVSFEYSPQLLPL-LDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIK  412 (659)
T ss_pred             CCCeEEEEeccCccccc-CCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccce
Confidence            99999999999999984 8999999988875 6789999999999999864333222343321       1        3


Q ss_pred             EEEcCEEEEeecCccCChh--hhhcCCcccCCCEEeCCCCCCC------CCCEEEEceecccCCccCCcccccccHHHHH
Q 011351          293 TIDADTIVIGIGAKPTVSP--FERVGLNSSVGGIQVDGQFRTR------MPGIFAIGDVAAFPLKMYDRTARVEHVDHAR  364 (488)
Q Consensus       293 ~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~g~i~vd~~~~t~------~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~  364 (488)
                      ++++|.|++|+|++||++.  ++..++..++|+|.||++|||+      +|||||+|||+..+.          ....|.
T Consensus       413 ~i~aD~VlvAtGr~Pnt~~L~l~~~gi~~~~G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~~~----------La~~A~  482 (659)
T PTZ00153        413 ETYVDSCLVATGRKPNTNNLGLDKLKIQMKRGFVSVDEHLRVLREDQEVYDNIFCIGDANGKQM----------LAHTAS  482 (659)
T ss_pred             EEEcCEEEEEECcccCCccCCchhcCCcccCCEEeECCCCCcCCCCCCCCCCEEEEEecCCCcc----------CHHHHH
Confidence            6999999999999999987  4677887777889999999997      699999999986432          345689


Q ss_pred             HHHHHHHHHHhcCC------------CC--CCCCCCceeEeccccCCCCcceeeEEeeCCCC------------------
Q 011351          365 QSAQHCIKALLSAQ------------TH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG------------------  412 (488)
Q Consensus       365 ~~g~~~a~~i~~~~------------~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~------------------  412 (488)
                      .||+.++++|.+..            ..  .|..+|..  ..++.+       +.++|....                  
T Consensus       483 ~qg~~aa~ni~g~~~~~~~~~~~~~~~~~~~~~~iP~~--ift~Pe-------iA~VGlTE~eA~~~g~~~~v~v~~~~~  553 (659)
T PTZ00153        483 HQALKVVDWIEGKGKENVNINVENWASKPIIYKNIPSV--CYTTPE-------LAFIGLTEKEAKELYPPDNVGVEISFY  553 (659)
T ss_pred             HHHHHHHHHHcCCCccccccccccccccccccCcCCEE--EECcCc-------eEEeeCCHHHHHhcCCCcceEEEEEEe
Confidence            99999999998742            11  23445541  111110       112222110                  


Q ss_pred             ----cEEEEcc---------------------CCCcEEEEEEE--CCEEEEEEeecCChHHhhHHHH-HHhcCCCCC-h-
Q 011351          413 ----ETIEIGN---------------------FDPKIATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVD-K-  462 (488)
Q Consensus       413 ----~~~~~~~---------------------~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~-~-  462 (488)
                          .....+.                     ....+.|+.++  +++|+|+++++.++.++.+.-. +|+.+.+++ . 
T Consensus       554 ~~~~ra~~~~~~~~p~~~~~~~y~~g~~~~~~~~~G~vKli~d~~t~rILGa~ivG~~A~elI~~~a~aI~~~~tv~dl~  633 (659)
T PTZ00153        554 KANSKVLCENNISFPNNSKNNSYNKGKYNTVDNTEGMVKIVYLKDTKEILGMFIVGSYASILIHEGVLAINLKLSVKDLA  633 (659)
T ss_pred             cccchhhhccccccccccccccccccccccccCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHh
Confidence                0000000                     02447777763  6999999998888888776655 578888886 2 


Q ss_pred             hhhcCCCcHHHHHHHHHccCC
Q 011351          463 AKLQQASSVEEALEIARAALP  483 (488)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~  483 (488)
                      ..++.|||++|.+..+++++.
T Consensus       634 ~~~~~hPT~sE~~~~a~~~~~  654 (659)
T PTZ00153        634 HMVHSHPTISEVLDAAFKAIA  654 (659)
T ss_pred             hCcCCCCChHHHHHHHHHHHH
Confidence            445889999999999998765

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=100.00  E-value=4.4e-40  Score=348.64  Aligned_cols=345  Identities=21%  Similarity=0.249  Sum_probs=246.1

Q ss_pred             cccccccceeeccccCCCCcccceec--cccccccccccccccc---------ccc-CCCCCeEEEEcCchHHHHHHHHH
Q 011351            3 SVSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVAY---------SSF-ANENREFVIVGGGNAAGYAARTF   70 (488)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---------~~~-~~~~~~vvIIGgG~AGl~aA~~L   70 (488)
                      -.+|||+.+||++|.++|+.+|.|..  .+++++...|+..+..         .|. ..+.++|+|||||+||++||..|
T Consensus       479 ~~~nPlP~icGrVCph~Ce~~C~R~~~d~pV~I~~Lkr~a~d~~~~~~~~~~~~~~~~~tgKkVaIIGgGPAGLsAA~~L  558 (1019)
T PRK09853        479 YQRNALPAITGHICDHQCQYNCTRLDYDEAVNIRELKKVALEKGWDEYKQRWHKPAGIGSRKKVAVIGAGPAGLAAAYFL  558 (1019)
T ss_pred             HHhCChhhHhhCcCCchhHHHhcCCCCCCCeeccHHHHHHHhhHHHhcccccCCCCccCCCCcEEEECCCHHHHHHHHHH
Confidence            46899999999999999999999987  8888888887776431         121 24568999999999999999999


Q ss_pred             HHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCC
Q 011351           71 VEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEK  150 (488)
Q Consensus        71 ~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~  150 (488)
                      ++.|+   +|+|+|+++.....   +.  +..+....+..           ......+++.+.|+++++++.+ .++   
T Consensus       559 ar~G~---~VtV~Ek~~~~GG~---lr--~~IP~~Rlp~e-----------vL~~die~l~~~GVe~~~gt~V-di~---  615 (1019)
T PRK09853        559 ARAGH---PVTVFEREENAGGV---VK--NIIPQFRIPAE-----------LIQHDIEFVKAHGVKFEFGCSP-DLT---  615 (1019)
T ss_pred             HHcCC---eEEEEecccccCcc---ee--eecccccccHH-----------HHHHHHHHHHHcCCEEEeCcee-EEE---
Confidence            99987   89999988764211   00  11111111100           0122346777889999998765 232   


Q ss_pred             cEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEec-CHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhC
Q 011351          151 QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIR-DVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW  229 (488)
Q Consensus       151 ~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~-~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~  229 (488)
                          +++.....||+||||||+.+...+.++|.+ +++.... .+.+..........+++|+|||+|.+|+|+|..+.+.
T Consensus       616 ----le~L~~~gYDaVILATGA~~~~~l~IpG~~-~gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~Rl  690 (1019)
T PRK09853        616 ----VEQLKNEGYDYVVVAIGADKNGGLKLEGGN-QNVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRV  690 (1019)
T ss_pred             ----hhhheeccCCEEEECcCCCCCCCCCCCCcc-CCceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhc
Confidence                223344579999999999854334445543 3443321 1222212223345689999999999999999998877


Q ss_pred             -C-CcEEEEecCCc-CcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcE----------------EEEEeCC
Q 011351          230 -K-LDTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV----------------AAVKLED  290 (488)
Q Consensus       230 -g-~~v~lv~~~~~-~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v----------------~~v~l~~  290 (488)
                       | .+|+++.|++. .++. .    .+.+.+.+ +.||+++++..+.++..  ++++                ..+...+
T Consensus       691 gGakeVTLVyRr~~~~MPA-~----~eEle~Al-eeGVe~~~~~~p~~I~~--dG~l~~~~~~lg~~d~~Gr~~~v~tg~  762 (1019)
T PRK09853        691 PGVEKVTVVYRRTKQEMPA-W----REEYEEAL-EDGVEFKELLNPESFDA--DGTLTCRVMKLGEPDESGRRRPVETGE  762 (1019)
T ss_pred             CCCceEEEEEccCcccccc-c----HHHHHHHH-HcCCEEEeCCceEEEEc--CCcEEEEEEEeecccCCCceEEeeCCC
Confidence             4 48999998763 3432 2    23344443 46999999998888863  2222                1122334


Q ss_pred             CcEEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHH
Q 011351          291 GSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH  369 (488)
Q Consensus       291 g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~  369 (488)
                      ++++++|.||+|+|.+|+.++++..|+..+ +|++.||++++|+.|+|||+|||+..+.          .+..|..+|+.
T Consensus       763 ~~~I~aD~VIvAIG~~Pntelle~~GL~ld~~G~I~VDetlqTs~pgVFAaGD~a~Gp~----------tvv~Ai~qGr~  832 (1019)
T PRK09853        763 TVTLEADTVITAIGEQVDTELLKANGIPLDKKGWPVVDANGETSLTNVYMIGDVQRGPS----------TIVAAIADARR  832 (1019)
T ss_pred             eEEEEeCEEEECCCCcCChhHHHhcCccccCCCCEEeCCCcccCCCCEEEEeccccCch----------HHHHHHHHHHH
Confidence            467999999999999999999998888765 5789999999999999999999986543          45579999999


Q ss_pred             HHHHHhcCCCCCCCCCCceeEecc
Q 011351          370 CIKALLSAQTHTYDYLPYFYSRVF  393 (488)
Q Consensus       370 ~a~~i~~~~~~~~~~~p~~~~~~~  393 (488)
                      +|++|++.....+...|++|+..+
T Consensus       833 AA~nI~~~~~~~~~~~~~~~~~~~  856 (1019)
T PRK09853        833 AADAILSREGIRSHQNDKYWNNVE  856 (1019)
T ss_pred             HHHHHhhhcCCCcccccccccccc
Confidence            999999766557777787777644

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=100.00  E-value=3.4e-38  Score=321.28  Aligned_cols=394  Identities=20%  Similarity=0.237  Sum_probs=260.5

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC---C---CCCCCCC------CccccCC-----CCCCCCCCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY---A---PYERPAL------TKGYLFP-----LDKKPARLPG  113 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~---~---~~~~~~l------~~~~~~~-----~~~~~~~~~~  113 (488)
                      ++|++|||||+||+.||..+++.|.   +|+|||+...   .   ...-.-+      +|.++..     .......+ +
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G~---~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~-g   77 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYGA---KVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNY-G   77 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhc-C
Confidence            4799999999999999999999987   8999997421   0   0100000      1110000     00000000 0


Q ss_pred             ccccc--CCC--------------CCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeC--CC--cEEEeccEEeccCCC
Q 011351          114 FHTCV--GSG--------------GERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITN--SG--KLLKYGSLIVATGCT  173 (488)
Q Consensus       114 ~~~~~--~~~--------------~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~--~g--~~i~yd~lVlAtG~~  173 (488)
                      +....  ..+              .......+++..+++++.+ ...-+++  ++|.+.  ++  +.+.||+||||||+.
T Consensus        78 ~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G-~a~f~~~--~~v~v~~~~g~~~~~~~d~lVIATGs~  154 (484)
T TIGR01438        78 WNVEETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENA-YAEFVDK--HRIKATNKKGKEKIYSAERFLIATGER  154 (484)
T ss_pred             cccCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEE-EEEEcCC--CEEEEeccCCCceEEEeCEEEEecCCC
Confidence            00000  000              0011223456679999876 4444444  344442  33  369999999999999


Q ss_pred             CCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHH
Q 011351          174 ASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQ  253 (488)
Q Consensus       174 ~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~  253 (488)
                      |. .|+++|.. +   ...   +.+.+......+++++|||+|.+|+|+|..|+++|.+|+++.+ +.+++ .+++++.+
T Consensus       155 p~-~p~ipG~~-~---~~~---~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~-~~~l~-~~d~~~~~  224 (484)
T TIGR01438       155 PR-YPGIPGAK-E---LCI---TSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-SILLR-GFDQDCAN  224 (484)
T ss_pred             CC-CCCCCCcc-c---eee---cHHHhhcccccCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEe-ccccc-ccCHHHHH
Confidence            86 45555431 1   111   2333333334568999999999999999999999999999987 46775 47999999


Q ss_pred             HHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCC---cEEEcCEEEEeecCccCChh--hhhcCCccc--CCCEEe
Q 011351          254 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVSP--FERVGLNSS--VGGIQV  326 (488)
Q Consensus       254 ~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g---~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~--~g~i~v  326 (488)
                      .+++.|++.||++++++.+++++..+ +. ..+.+.++   +++++|.|++++|++||+++  +++.++..+  +|+|.|
T Consensus       225 ~l~~~L~~~gV~i~~~~~v~~v~~~~-~~-~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~V  302 (484)
T TIGR01438       225 KVGEHMEEHGVKFKRQFVPIKVEQIE-AK-VKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPA  302 (484)
T ss_pred             HHHHHHHHcCCEEEeCceEEEEEEcC-Ce-EEEEEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEec
Confidence            99999999999999999999987543 33 24555555   37999999999999999986  567888765  377999


Q ss_pred             CCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC--CCCCCCCceeEeccccCCCCcceee
Q 011351          327 DGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWW  404 (488)
Q Consensus       327 d~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~--~~~~~~p~~~~~~~~~~g~~~~~~~  404 (488)
                      |++++|+.|+|||+|||+....         .....|..+|+.+|+||++...  ..+..+|..   .|..+-      +
T Consensus       303 d~~~~Ts~p~IyA~GDv~~~~~---------~l~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~---i~~~p~------i  364 (484)
T TIGR01438       303 DEEEQTNVPYIYAVGDILEDKQ---------ELTPVAIQAGRLLAQRLFSGSTVICDYENVPTT---VFTPLE------Y  364 (484)
T ss_pred             CCCcccCCCCEEEEEEecCCCc---------cchHHHHHHHHHHHHHHhcCCCcccccccCCeE---EeCCCc------e
Confidence            9999999999999999996321         1345689999999999986442  234556653   222210      2


Q ss_pred             EEeeCCCC---------cEE-EEccC-------------CCcEEEEEE-E--CCEEEEEEeecCChHHhhHH-HHHHhcC
Q 011351          405 QFFGDNVG---------ETI-EIGNF-------------DPKIATFWI-D--SGKLKGVLVESGSPEEFQLL-PTLARSQ  457 (488)
Q Consensus       405 ~~~g~~~~---------~~~-~~~~~-------------~~~~~~~~~-~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~  457 (488)
                      ..+|....         ... ....+             ...+.++.+ +  +++|+|+++++.++.++... ..+|+++
T Consensus       365 a~vGlte~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~t~~ILG~~ivg~~a~e~I~~~a~ai~~~  444 (484)
T TIGR01438       365 GACGLSEEKAVEKFGEENIEVFHSYFWPLEWTIPSRDNSNKCYAKAVCNRKENERVVGFHVVGPNAGEVTQGFAAALRCG  444 (484)
T ss_pred             eeecCCHHHHHHhcCCCcEEEEEeecchhhhHhhCCCccCCcEEEEEEecCCCCeEEEEEEECCCHHHHHHHHHHHHHcC
Confidence            22332211         000 00000             123666654 2  59999999877777776654 4557888


Q ss_pred             CCCC-h-hhhcCCCcHHHHHHHHHcc
Q 011351          458 PFVD-K-AKLQQASSVEEALEIARAA  481 (488)
Q Consensus       458 ~~~~-~-~~~~~~~~~~~~~~~~~~~  481 (488)
                      .+++ . ...+.|||++|++..++..
T Consensus       445 ~t~~dl~~~~~~hPt~sE~~~~~~~~  470 (484)
T TIGR01438       445 LTKKDLDNTIGIHPVCAEVFTTLSVT  470 (484)
T ss_pred             CCHHHHhhhhcCCCChHHHHHHhhhh
Confidence            8876 2 3457899999999998755

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=100.00  E-value=1.4e-38  Score=325.37  Aligned_cols=401  Identities=20%  Similarity=0.284  Sum_probs=268.3

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---CCCC-CccccCCCCC-------CCCCC----CCcc
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---RPAL-TKGYLFPLDK-------KPARL----PGFH  115 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~---~~~l-~~~~~~~~~~-------~~~~~----~~~~  115 (488)
                      ++||+|||||+||++||.+|++.|.   +|+|||++ .....   +... ++.++.....       ....+    ..+.
T Consensus         1 ~yDvvVIG~G~aGl~aA~~la~~G~---~v~lie~~-~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~   76 (461)
T TIGR01350         1 AYDVVVIGGGPGGYVAAIRAAQLGL---KVALVEKE-YLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVD   76 (461)
T ss_pred             CccEEEECCCHHHHHHHHHHHhCCC---eEEEEecC-CCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCC
Confidence            3799999999999999999999987   89999983 32111   0000 1111000000       00000    0000


Q ss_pred             --cccC------CCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCC-cEEEeccEEeccCCCCCcCCCCCCCCCC
Q 011351          116 --TCVG------SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG-KLLKYGSLIVATGCTASRFPEKIGGYLP  186 (488)
Q Consensus       116 --~~~~------~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g-~~i~yd~lVlAtG~~~~~~~~~~g~~~~  186 (488)
                        ....      .........++++.+++++.+ ++..+++....+...++ .++.||+||||||+.|..+| .+ ...+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~~p~~~~-~~-~~~~  153 (461)
T TIGR01350        77 WEKMQKRKNKVVKKLVGGVKGLLKKNKVTVIKG-EAKFLDPGTVLVTGENGEETLTAKNIIIATGSRPRSLP-GP-FDFD  153 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCEEEEecCCCcEEEEeCEEEEcCCCCCCCCC-CC-CCCC
Confidence              0000      000001123445678998875 55556654444554444 47999999999999886433 32 1122


Q ss_pred             cEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEE
Q 011351          187 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF  266 (488)
Q Consensus       187 gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v  266 (488)
                      +. .+.+..+.   ......+++++|||+|.+|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+++.||++
T Consensus       154 ~~-~~~~~~~~---~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~~~~~l~~~gi~i  228 (461)
T TIGR01350       154 GE-VVITSTGA---LNLKEVPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPG-EDAEVSKVVAKALKKKGVKI  228 (461)
T ss_pred             Cc-eEEcchHH---hccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCC-CCHHHHHHHHHHHHHcCCEE
Confidence            22 22222222   222345789999999999999999999999999999999999874 78899999999999999999


Q ss_pred             EcCCeEEEEEeCCCCcEEEEEeCCC--cEEEcCEEEEeecCccCCh--hhhhcCCccc-CCCEEeCCCCCCCCCCEEEEc
Q 011351          267 VKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVS--PFERVGLNSS-VGGIQVDGQFRTRMPGIFAIG  341 (488)
Q Consensus       267 ~~~~~v~~i~~~~~~~v~~v~l~~g--~~i~~D~vi~a~G~~p~~~--~~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~G  341 (488)
                      ++++++++++.. ++.+ .+.+.+|  +++++|.+|+|+|.+|+++  ++++.++..+ +|++.||++++|+.|+|||+|
T Consensus       229 ~~~~~v~~i~~~-~~~v-~v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~IyaiG  306 (461)
T TIGR01350       229 LTNTKVTAVEKN-DDQV-VYENKGGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEYMRTNVPGIYAIG  306 (461)
T ss_pred             EeCCEEEEEEEe-CCEE-EEEEeCCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCCCcccCCCCEEEee
Confidence            999999999754 3333 3555666  4799999999999999988  5788888876 577999999999999999999


Q ss_pred             eecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCC--CCCCCceeEeccccCCCCcceeeEEeeCCCC-------
Q 011351          342 DVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT--YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------  412 (488)
Q Consensus       342 D~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~~--~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~-------  412 (488)
                      ||+..+.          ....|..+|+.+|.+|.+.....  +...|+.  ..++..       +..+|....       
T Consensus       307 D~~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~--~~~~~~-------~a~vG~~~~~a~~~g~  367 (461)
T TIGR01350       307 DVIGGPM----------LAHVASHEGIVAAENIAGKEPAPIDYDAVPSC--IYTDPE-------VASVGLTEEQAKEAGY  367 (461)
T ss_pred             ecCCCcc----------cHHHHHHHHHHHHHHHcCCCCCCCCCCCCCeE--EecCCc-------eEEEeCCHHHHHhCCC
Confidence            9997432          45679999999999998643312  3344542  222211       222332211       


Q ss_pred             cE--EEE----------ccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC--hhhhcCCCcHHHHH
Q 011351          413 ET--IEI----------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD--KAKLQQASSVEEAL  475 (488)
Q Consensus       413 ~~--~~~----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~  475 (488)
                      +.  ...          .+....+.++.++  +++|+|+++++.++.++... ..+|+++.+++  ...+..||+++|++
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~g~~kl~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~P~~~e~~  447 (461)
T TIGR01350       368 DVKIGKFPFAANGKALALGETDGFVKIIADKKTGEILGAHIIGPHATELISEAVLAMELELTVEELAKTIHPHPTLSEAI  447 (461)
T ss_pred             CeEEEEEeCccchHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcccCCCHHHHH
Confidence            00  000          0112346777664  59999999888887776655 45678888886  23457899999999


Q ss_pred             HHHHccCCc
Q 011351          476 EIARAALPV  484 (488)
Q Consensus       476 ~~~~~~~~~  484 (488)
                      +.+++++..
T Consensus       448 ~~~~~~~~~  456 (461)
T TIGR01350       448 KEAALAALG  456 (461)
T ss_pred             HHHHHHhcc
Confidence            999887654

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=1.9e-38  Score=323.02  Aligned_cols=397  Identities=18%  Similarity=0.222  Sum_probs=264.6

Q ss_pred             eEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCC-CCCCccccC--------------CCC----CCCCCC
Q 011351           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YER-PALTKGYLF--------------PLD----KKPARL  111 (488)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~--~~~-~~l~~~~~~--------------~~~----~~~~~~  111 (488)
                      +|+|||||+||++||..+++.|.   +|+|||+++...  .++ +--+|.++.              ...    ....++
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~---~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   78 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGK---NVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDW   78 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC---cEEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCH
Confidence            89999999999999999999987   899999875321  000 001111100              000    000000


Q ss_pred             CCcccc---cCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCC-cEEEeccEEeccCCCCCcCCCCCCCCCCc
Q 011351          112 PGFHTC---VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG-KLLKYGSLIVATGCTASRFPEKIGGYLPG  187 (488)
Q Consensus       112 ~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g-~~i~yd~lVlAtG~~~~~~~~~~g~~~~g  187 (488)
                      ......   ............++..+++++.+ ++..++.....|..+++ +++.||+||||||+.|..+| .++.+...
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs~p~~~p-~~~~~~~~  156 (458)
T PRK06912         79 KQMQARKSQIVTQLVQGIQYLMKKNKIKVIQG-KASFETDHRVRVEYGDKEEVVDAEQFIIAAGSEPTELP-FAPFDGKW  156 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEE-EEEEccCCEEEEeeCCCcEEEECCEEEEeCCCCCCCCC-CCCCCCCe
Confidence            000000   00000001122345568998875 56666655445555555 36999999999999986433 33322233


Q ss_pred             EEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEE
Q 011351          188 VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV  267 (488)
Q Consensus       188 v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~  267 (488)
                      +.+.      .........+++++|||+|++|+|+|..+.++|.+|+++++.+++++. +++++.+.+.+.|++.||+++
T Consensus       157 v~~~------~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~-~d~e~~~~l~~~L~~~GI~i~  229 (458)
T PRK06912        157 IINS------KHAMSLPSIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPG-EDEDIAHILREKLENDGVKIF  229 (458)
T ss_pred             EEcc------hHHhCccccCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCcc-ccHHHHHHHHHHHHHCCCEEE
Confidence            3222      222233345789999999999999999999999999999999999885 688999999999999999999


Q ss_pred             cCCeEEEEEeCCCCcEEEEEeCCC--cEEEcCEEEEeecCccCChh--hhhcCCcccCCCEEeCCCCCCCCCCEEEEcee
Q 011351          268 KGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSP--FERVGLNSSVGGIQVDGQFRTRMPGIFAIGDV  343 (488)
Q Consensus       268 ~~~~v~~i~~~~~~~v~~v~l~~g--~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~g~i~vd~~~~t~~~~Ifa~GD~  343 (488)
                      +++++++++.. +..+ .+.. +|  +++++|.|++|+|.+|+.++  ++..++..+++++.||+++||+.|||||+|||
T Consensus       230 ~~~~V~~i~~~-~~~v-~~~~-~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~gi~Vd~~~~ts~~~VyA~GD~  306 (458)
T PRK06912        230 TGAALKGLNSY-KKQA-LFEY-EGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKGISVNEHMQTNVPHIYACGDV  306 (458)
T ss_pred             ECCEEEEEEEc-CCEE-EEEE-CCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCCEEeCCCeecCCCCEEEEeec
Confidence            99999999753 2222 2332 34  36999999999999999875  46778877666799999999999999999999


Q ss_pred             cccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC-CCCCCCceeEeccccCCCCcceeeEEeeCCCC-------cEE
Q 011351          344 AAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH-TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETI  415 (488)
Q Consensus       344 a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~-~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~-------~~~  415 (488)
                      +..+.          ....|..+|+.+|.++.+.... .+..+|...  .++..       +..+|....       +..
T Consensus       307 ~~~~~----------la~~A~~~g~~aa~~~~g~~~~~~~~~~p~~v--~~~p~-------~a~vGlte~~a~~~g~~~~  367 (458)
T PRK06912        307 IGGIQ----------LAHVAFHEGTTAALHASGEDVKVNYHAVPRCI--YTSPE-------IASVGLTEKQAREQYGDIR  367 (458)
T ss_pred             CCCcc----------cHHHHHHHHHHHHHHHcCCCCCCCcCCCCeEE--ecCch-------hEEeeCCHHHHHHCCCCeE
Confidence            96422          4456999999999999864322 244566421  11111       122232211       000


Q ss_pred             E-------------EccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC--hhhhcCCCcHHHHHHH
Q 011351          416 E-------------IGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD--KAKLQQASSVEEALEI  477 (488)
Q Consensus       416 ~-------------~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~  477 (488)
                      .             .+. ...+.++.++  +++|+|++++++++.++... ..+|+.+.+++  ...++.||+++|++..
T Consensus       368 ~~~~~~~~~~~~~~~~~-~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~  446 (458)
T PRK06912        368 IGEFPFTANGKALIIGE-QTGKVKVIVEPKYQEIVGISIIGPRATELIGQGTVMIHTEVTADIMEDFIAAHPTLSEAIHE  446 (458)
T ss_pred             EEEEecCcchhHhhcCC-CceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCCHHHHHHH
Confidence            0             111 2346777774  58999999888777776554 45678888876  2445889999999999


Q ss_pred             HHccCCc
Q 011351          478 ARAALPV  484 (488)
Q Consensus       478 ~~~~~~~  484 (488)
                      +++.+..
T Consensus       447 ~~~~~~~  453 (458)
T PRK06912        447 ALLQAVG  453 (458)
T ss_pred             HHHHhhc
Confidence            9876543

>TIGR03452 mycothione_red mycothione reductase

Probab=100.00  E-value=1.6e-38  Score=322.13  Aligned_cols=317  Identities=23%  Similarity=0.280  Sum_probs=231.9

Q ss_pred             CCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEE
Q 011351          133 KGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVV  212 (488)
Q Consensus       133 ~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvV  212 (488)
                      .+++++.+..+..   +.++|.+.+|+++.||+||||||+.|.. |+..+  ..++. +.+..+...+   ...+++++|
T Consensus       105 ~gv~~~~g~~~~~---~~~~V~~~~g~~~~~d~lIiATGs~p~~-p~~~~--~~~~~-~~~~~~~~~l---~~~~k~vvV  174 (452)
T TIGR03452       105 PNIDVYDGHARFV---GPRTLRTGDGEEITGDQIVIAAGSRPYI-PPAIA--DSGVR-YHTNEDIMRL---PELPESLVI  174 (452)
T ss_pred             CCeEEEEEEEEEe---cCCEEEECCCcEEEeCEEEEEECCCCCC-CCCCC--CCCCE-EEcHHHHHhh---hhcCCcEEE
Confidence            7899998754432   5678888888889999999999999864 43222  12332 3333444333   235789999


Q ss_pred             ECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCc
Q 011351          213 VGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS  292 (488)
Q Consensus       213 vG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~  292 (488)
                      ||+|++|+|+|..|.++|.+|+++++.+++++. +++++.+.+.+.+ +.||++++++++++++..+ +.+ .+.+.+|+
T Consensus       175 IGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~-~d~~~~~~l~~~~-~~gI~i~~~~~V~~i~~~~-~~v-~v~~~~g~  250 (452)
T TIGR03452       175 VGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRH-LDEDISDRFTEIA-KKKWDIRLGRNVTAVEQDG-DGV-TLTLDDGS  250 (452)
T ss_pred             ECCCHHHHHHHHHHHhCCCcEEEEEccCccccc-cCHHHHHHHHHHH-hcCCEEEeCCEEEEEEEcC-CeE-EEEEcCCC
Confidence            999999999999999999999999999998874 7889888887755 4689999999999998543 333 46677888


Q ss_pred             EEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHH
Q 011351          293 TIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH  369 (488)
Q Consensus       293 ~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~  369 (488)
                      ++++|.|++++|++|++++  +++.|++.+ +|+|.||+++||+.|+|||+|||+..+.          ....|..||+.
T Consensus       251 ~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~----------l~~~A~~~g~~  320 (452)
T TIGR03452       251 TVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGRTSARGVWALGDVSSPYQ----------LKHVANAEARV  320 (452)
T ss_pred             EEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCcccCCCCEEEeecccCccc----------ChhHHHHHHHH
Confidence            9999999999999999987  467788875 5779999999999999999999997432          23458899999


Q ss_pred             HHHHHhcCCC---CCCCCCCceeEeccccCCCCcceeeEEeeCCCC-------cE--EEE----------ccCCCcEEEE
Q 011351          370 CIKALLSAQT---HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ET--IEI----------GNFDPKIATF  427 (488)
Q Consensus       370 ~a~~i~~~~~---~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~-------~~--~~~----------~~~~~~~~~~  427 (488)
                      +|+||++...   ..+..+|..   .|..+-      +.++|....       +.  ...          ......+.|+
T Consensus       321 ~a~ni~~~~~~~~~~~~~~p~~---i~t~p~------ia~vGlte~ea~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Kl  391 (452)
T TIGR03452       321 VKHNLLHPNDLRKMPHDFVPSA---VFTHPQ------IATVGLTEQEAREAGHDITVKIQNYGDVAYGWAMEDTTGFCKL  391 (452)
T ss_pred             HHHHhcCCCCcccCCCCCCCeE---EECCCC------eeeeeCCHHHHHhcCCCeEEEEecCCchhhHhhcCCCCeEEEE
Confidence            9999987432   234456653   221110      223333221       00  000          0112346777


Q ss_pred             EEE--CCEEEEEEeecCChHHhhHHH-HHHhcCCCCC-hhh--hcCCCcHHHHHHHHHccC
Q 011351          428 WID--SGKLKGVLVESGSPEEFQLLP-TLARSQPFVD-KAK--LQQASSVEEALEIARAAL  482 (488)
Q Consensus       428 ~~~--~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~  482 (488)
                      .++  +++|+|+++++.++.++.... .+|+++.+++ ...  ...||++.|+++.+++++
T Consensus       392 v~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~hPt~~e~~~~a~~~~  452 (452)
T TIGR03452       392 IADRDTGKLLGAHIIGPQASSLIQPLITAMAFGLDAREMARKQYWIHPALPEVVENALLGL  452 (452)
T ss_pred             EEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCCcccCCchHHHHHHHHhcC
Confidence            764  699999998888877766554 4578888886 433  468999999999998864

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=7.5e-39  Score=327.21  Aligned_cols=396  Identities=20%  Similarity=0.286  Sum_probs=262.7

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC----CCCCccccC--------------CCCCCCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER----PALTKGYLF--------------PLDKKPARL  111 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~----~~l~~~~~~--------------~~~~~~~~~  111 (488)
                      +++||||||||+||++||..|++.|.   +|+|||++. .....    +-.++.++.              ........+
T Consensus         2 ~~yDvvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~-~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~   77 (460)
T PRK06292          2 EKYDVIVIGAGPAGYVAARRAAKLGK---KVALIEKGP-LGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKI   77 (460)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHCCC---eEEEEeCCc-cccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCcc
Confidence            46899999999999999999999987   899999843 21110    000110000              000000000


Q ss_pred             CCccccc------CCCCCCCC-HhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCC
Q 011351          112 PGFHTCV------GSGGERQT-PEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY  184 (488)
Q Consensus       112 ~~~~~~~------~~~~~~~~-~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~  184 (488)
                      . +....      ........ ...++..+++++.+ .+..++.  +++.+ +++++.||+||||||+.   .|+++|..
T Consensus        78 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~--~~v~v-~~~~~~~d~lIiATGs~---~p~ipg~~  149 (460)
T PRK06292         78 D-FKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKG-TARFVDP--NTVEV-NGERIEAKNIVIATGSR---VPPIPGVW  149 (460)
T ss_pred             C-HHHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEE-EEEEccC--CEEEE-CcEEEEeCEEEEeCCCC---CCCCCCCc
Confidence            0 00000      00000011 12234557777764 4444443  45555 67789999999999998   23334431


Q ss_pred             ---CCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHH
Q 011351          185 ---LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ  261 (488)
Q Consensus       185 ---~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~  261 (488)
                         ...+++      .+........+++++|||+|.+|+|+|..|.++|.+|+++++.+++++. +++++.+.+++.|++
T Consensus       150 ~~~~~~~~~------~~~~~~~~~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~~~~~l~~  222 (460)
T PRK06292        150 LILGDRLLT------SDDAFELDKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL-EDPEVSKQAQKILSK  222 (460)
T ss_pred             ccCCCcEEC------chHHhCccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc-hhHHHHHHHHHHHhh
Confidence               122222      2222222345799999999999999999999999999999999999874 789999999999999


Q ss_pred             cCcEEEcCCeEEEEEeCCCCcEEEEEeCCC--cEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCCCCCCCC
Q 011351          262 NGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPG  336 (488)
Q Consensus       262 ~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g--~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~  336 (488)
                      . |++++++++++++..++..+ .+.+.++  +++++|.|++++|.+|++++  ++..++..+ +|.|.||+++||+.||
T Consensus       223 ~-I~i~~~~~v~~i~~~~~~~v-~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~~ts~~~  300 (460)
T PRK06292        223 E-FKIKLGAKVTSVEKSGDEKV-EELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQTSVPG  300 (460)
T ss_pred             c-cEEEcCCEEEEEEEcCCceE-EEEEcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCcccCCCC
Confidence            9 99999999999985432222 2323333  57999999999999999984  677888765 5779999999999999


Q ss_pred             EEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCCCCceeEeccccCCCCcceeeEEeeCCCC--
Q 011351          337 IFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--  412 (488)
Q Consensus       337 Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~--  412 (488)
                      |||+|||+..+.          ....|..||+.+|.||++....  .+..+|+.   .|..+-      +..+|....  
T Consensus       301 IyA~GD~~~~~~----------~~~~A~~qg~~aa~~i~~~~~~~~~~~~~p~~---~~~~~~------~a~vG~te~~a  361 (460)
T PRK06292        301 IYAAGDVNGKPP----------LLHEAADEGRIAAENAAGDVAGGVRYHPIPSV---VFTDPQ------IASVGLTEEEL  361 (460)
T ss_pred             EEEEEecCCCcc----------chhHHHHHHHHHHHHhcCCCCCCcCCCCCCeE---EECCCc------cEEeECCHHHH
Confidence            999999997532          3456999999999999874222  23445542   232110      233443221  


Q ss_pred             -----cE--EEE--c--------cCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC-h-hhhcCCCc
Q 011351          413 -----ET--IEI--G--------NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASS  470 (488)
Q Consensus       413 -----~~--~~~--~--------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~  470 (488)
                           +.  ...  .        +....+.++.++  +++|+|+++++.++.++... ..+|+++.+++ . ...+.|||
T Consensus       362 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt  441 (460)
T PRK06292        362 KAAGIDYVVGEVPFEAQGRARVMGKNDGFVKVYADKKTGRLLGAHIIGPDAEHLIHLLAWAMQQGLTVEDLLRMPFYHPT  441 (460)
T ss_pred             HhcCCCeEEEEEecccchHHHhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccCCCC
Confidence                 00  000  0        112347777764  48999999888877765544 55678888887 2 44588999


Q ss_pred             HHHHHHHHHccCCcc
Q 011351          471 VEEALEIARAALPVE  485 (488)
Q Consensus       471 ~~~~~~~~~~~~~~~  485 (488)
                      +.|++..+++.+..+
T Consensus       442 ~~e~~~~~~~~~~~~  456 (460)
T PRK06292        442 LSEGLRTALRDLFSK  456 (460)
T ss_pred             HHHHHHHHHHHHhhh
Confidence            999999998876543

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=100.00  E-value=4.5e-40  Score=332.96  Aligned_cols=332  Identities=21%  Similarity=0.217  Sum_probs=241.4

Q ss_pred             cccccccceeeccccC--CCCcccceec------cccccccccccccccc---------cccCCCCCeEEEEcCchHHHH
Q 011351            3 SVSNSLSFKHGLSLWC--PQSPSLHRIR------HSSAKNFQRRGFVVAY---------SSFANENREFVIVGGGNAAGY   65 (488)
Q Consensus         3 ~~~~~~~~~~~~~~~~--~~~~~~~~~~------~~~~~~~~~~~~~~~~---------~~~~~~~~~vvIIGgG~AGl~   65 (488)
                      -.+|||+.+||++|.+  +|+.+|.+..      .++.++...|+..+..         .+.....++|+|||||+||++
T Consensus        68 ~~~~p~p~~~grvC~~~~~Ce~~C~~~~~~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~IIG~G~aGl~  147 (449)
T TIGR01316        68 KTTSLLPAICGRVCPQERQCEGQCTVGKMFKDVGKPVSIGALERFVADWERQHGIETEPEKAPSTHKKVAVIGAGPAGLA  147 (449)
T ss_pred             HHhCChhHHhccCCCCccchHhhCcCCCcCCCCCCCccHHHHHHHHHhHHHhcCCCcCCCCCCCCCCEEEEECcCHHHHH
Confidence            4689999999999998  9999998753      5677777777665321         122345689999999999999


Q ss_pred             HHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHHHCCCeEEeCCcEEE
Q 011351           66 AARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTS  145 (488)
Q Consensus        66 aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~  145 (488)
                      +|..|++.|+   +|+|+|+++.....   +.  +-.+.    .+++       .+......+++++.+++++.++.+  
T Consensus       148 aA~~l~~~G~---~V~vie~~~~~GG~---l~--~gip~----~~~~-------~~~~~~~~~~l~~~gv~~~~~~~v--  206 (449)
T TIGR01316       148 CASELAKAGH---SVTVFEALHKPGGV---VT--YGIPE----FRLP-------KEIVVTEIKTLKKLGVTFRMNFLV--  206 (449)
T ss_pred             HHHHHHHCCC---cEEEEecCCCCCcE---ee--ecCCC----ccCC-------HHHHHHHHHHHHhCCcEEEeCCcc--
Confidence            9999999987   89999997643210   00  00000    0110       000112345677889999987543  


Q ss_pred             EeCCCcEEEeCCCcEEEeccEEeccCC-CCCcCCCCCCCCCCcEEEecCHHHHHHHHH---------hhhcCCeEEEECC
Q 011351          146 IDIEKQTLITNSGKLLKYGSLIVATGC-TASRFPEKIGGYLPGVHYIRDVADADALIS---------SLEKAKKVVVVGG  215 (488)
Q Consensus       146 id~~~~~v~~~~g~~i~yd~lVlAtG~-~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~---------~~~~~~~vvVvG~  215 (488)
                          .+.+++++.. ..||+||||||+ .+. .+.++|.+.+++++..++.+...+..         ....+++++|||+
T Consensus       207 ----~~~v~~~~~~-~~yd~viiAtGa~~p~-~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGg  280 (449)
T TIGR01316       207 ----GKTATLEELF-SQYDAVFIGTGAGLPK-LMNIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGG  280 (449)
T ss_pred             ----CCcCCHHHHH-hhCCEEEEeCCCCCCC-cCCCCCCCCCCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECC
Confidence                2344444332 479999999998 454 45677877788877654443322221         1235789999999


Q ss_pred             CHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC------
Q 011351          216 GYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE------  289 (488)
Q Consensus       216 G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~------  289 (488)
                      |.+|+|+|..+.++|.+|+++++.++...   +.  .....+.+++.||++++++.++++..++++++..|.+.      
T Consensus       281 G~~a~d~A~~l~~~G~~Vtlv~~~~~~~~---~~--~~~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~  355 (449)
T TIGR01316       281 GNTAVDSARTALRLGAEVHCLYRRTREDM---TA--RVEEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQE  355 (449)
T ss_pred             CHHHHHHHHHHHHcCCEEEEEeecCcccC---CC--CHHHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecC
Confidence            99999999999999999999998764211   11  12223557889999999999999976555666666543      


Q ss_pred             ---CC-----------cEEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCcc
Q 011351          290 ---DG-----------STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRT  354 (488)
Q Consensus       290 ---~g-----------~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~  354 (488)
                         +|           +++++|.||+++|+.|+..+++..++..+ +|+|.||++++|+.|+|||+|||+..+.      
T Consensus       356 ~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l~~~gl~~~~~G~i~vd~~~~Ts~~~VfA~GD~~~g~~------  429 (449)
T TIGR01316       356 QIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETTRLKTSERGTIVVDEDQRTSIPGVFAGGDIILGAA------  429 (449)
T ss_pred             cCCCCCeeeeecCCceEEEECCEEEECCCCCCCchhhhccCcccCCCCeEEeCCCCccCCCCEEEecCCCCCcH------
Confidence               23           26999999999999999988888888865 5789999999999999999999986432      


Q ss_pred             cccccHHHHHHHHHHHHHHHhc
Q 011351          355 ARVEHVDHARQSAQHCIKALLS  376 (488)
Q Consensus       355 ~~~~~~~~A~~~g~~~a~~i~~  376 (488)
                          .+..|+.+|+.+|.+|..
T Consensus       430 ----~v~~Ai~~G~~AA~~I~~  447 (449)
T TIGR01316       430 ----TVIRAMGQGKRAAKSINE  447 (449)
T ss_pred             ----HHHHHHHHHHHHHHHHHh
Confidence                556799999999999863

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=3.3e-38  Score=322.47  Aligned_cols=400  Identities=19%  Similarity=0.257  Sum_probs=266.3

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC------CCCCCC---CCCC-CccccCCC-----CCCC-CCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE------AYAPYE---RPAL-TKGYLFPL-----DKKP-ARLPG  113 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~------~~~~~~---~~~l-~~~~~~~~-----~~~~-~~~~~  113 (488)
                      ..+|++|||||+||++||.++++.|.   +|+|||+.      ......   +... ++.++...     .... ..+ +
T Consensus         3 ~~~DviIIG~G~aG~~aA~~~~~~g~---~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~-G   78 (475)
T PRK06327          3 KQFDVVVIGAGPGGYVAAIRAAQLGL---KVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADH-G   78 (475)
T ss_pred             cceeEEEECCCHHHHHHHHHHHhCCC---eEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhc-C
Confidence            46899999999999999999999987   89999981      111100   0000 01000000     0000 000 0


Q ss_pred             ccccc-CCC--------------CCCCCHhHHHHCCCeEEeCCcEEEEeC--CCcEEEeC--CCcEEEeccEEeccCCCC
Q 011351          114 FHTCV-GSG--------------GERQTPEWYKEKGIEMIYQDPVTSIDI--EKQTLITN--SGKLLKYGSLIVATGCTA  174 (488)
Q Consensus       114 ~~~~~-~~~--------------~~~~~~~~~~~~~i~~~~~~~v~~id~--~~~~v~~~--~g~~i~yd~lVlAtG~~~  174 (488)
                      ..... ..+              ......+.++..+++++.+ ++..++.  +.++|.+.  +++++.||+||||||+.+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~p  157 (475)
T PRK06327         79 IHVDGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKG-RGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEP  157 (475)
T ss_pred             ccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCCC
Confidence            00000 000              0001123345568998875 5655653  34667664  345799999999999998


Q ss_pred             CcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHH
Q 011351          175 SRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR  254 (488)
Q Consensus       175 ~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~  254 (488)
                      ..+|..+   .++...+.    ++.+......+++++|||+|.+|+|+|..|.++|.+|+++++.+++++. +++++.+.
T Consensus       158 ~~~p~~~---~~~~~~~~----~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~  229 (475)
T PRK06327        158 RHLPGVP---FDNKIILD----NTGALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA-ADEQVAKE  229 (475)
T ss_pred             CCCCCCC---CCCceEEC----cHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc-CCHHHHHH
Confidence            6443321   22221221    2222222345799999999999999999999999999999999998875 78999999


Q ss_pred             HHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCC--C--cEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeC
Q 011351          255 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED--G--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVD  327 (488)
Q Consensus       255 ~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~--g--~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd  327 (488)
                      +.+.|++.||+++++++|++++..+ +.+ .+.+.+  |  +++++|.+++++|.+|++++  ++.+++..+ +|+|.||
T Consensus       230 ~~~~l~~~gi~i~~~~~v~~i~~~~-~~v-~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd  307 (475)
T PRK06327        230 AAKAFTKQGLDIHLGVKIGEIKTGG-KGV-SVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVD  307 (475)
T ss_pred             HHHHHHHcCcEEEeCcEEEEEEEcC-CEE-EEEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeEC
Confidence            9999999999999999999998543 333 355444  3  46999999999999999884  567788765 5779999


Q ss_pred             CCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeEeccccCCCCcceeeEE
Q 011351          328 GQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQF  406 (488)
Q Consensus       328 ~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~  406 (488)
                      ++++|+.|+|||+|||+..+.          ....|..+|+.+|.+|++... ..+..+|...  .++..       +..
T Consensus       308 ~~~~Ts~~~VyA~GD~~~~~~----------~~~~A~~~G~~aa~~i~g~~~~~~~~~~p~~~--~~~pe-------~a~  368 (475)
T PRK06327        308 DHCRTNVPNVYAIGDVVRGPM----------LAHKAEEEGVAVAERIAGQKGHIDYNTIPWVI--YTSPE-------IAW  368 (475)
T ss_pred             CCCccCCCCEEEEEeccCCcc----------hHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEE--eCCcc-------eEE
Confidence            999999999999999997432          345689999999999986432 2344556532  11211       223


Q ss_pred             eeCCCCc-------E--EEE--c--------cCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC-h-
Q 011351          407 FGDNVGE-------T--IEI--G--------NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-  462 (488)
Q Consensus       407 ~g~~~~~-------~--~~~--~--------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-  462 (488)
                      +|....+       +  ...  .        .-...+.++.++  +++|+|+++++.++.++... ..+|+++.+++ . 
T Consensus       369 vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~  448 (475)
T PRK06327        369 VGKTEQQLKAEGVEYKAGKFPFMANGRALAMGEPDGFVKIIADAKTDEILGVHVIGPNASELIAEAVVAMEFKASSEDIA  448 (475)
T ss_pred             EeCCHHHHHHcCCCEEEEEEcccccchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHh
Confidence            3332210       0  000  0        012347777764  69999999988887776655 55678888886 3 


Q ss_pred             hhhcCCCcHHHHHHHHHccCC
Q 011351          463 AKLQQASSVEEALEIARAALP  483 (488)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~  483 (488)
                      ..++.|||+.|.++.|++.+.
T Consensus       449 ~~~~~hPt~~e~~~~~~~~~~  469 (475)
T PRK06327        449 RICHAHPTLSEVWHEAALAVD  469 (475)
T ss_pred             cCCcCCCChHHHHHHHHHHhc
Confidence            335789999999999986553

>PRK12831 putative oxidoreductase; Provisional

Probab=100.00  E-value=1.9e-39  Score=328.80  Aligned_cols=333  Identities=21%  Similarity=0.221  Sum_probs=241.5

Q ss_pred             cccccccceeeccccC--CCCcccceec--cccccccccccccccc--------cccCCCCCeEEEEcCchHHHHHHHHH
Q 011351            3 SVSNSLSFKHGLSLWC--PQSPSLHRIR--HSSAKNFQRRGFVVAY--------SSFANENREFVIVGGGNAAGYAARTF   70 (488)
Q Consensus         3 ~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~--------~~~~~~~~~vvIIGgG~AGl~aA~~L   70 (488)
                      ..+|||+.+||++|++  +|+.+|.|..  .++.++...|+..++.        .+...+.++|+|||||+||++||..|
T Consensus        80 ~~~np~p~~~grvC~~~~~Ce~~C~r~~~~~~v~I~~l~r~~~~~~~~~~~~~~~~~~~~~~~V~IIG~GpAGl~aA~~l  159 (464)
T PRK12831         80 AKYNALPAVCGRVCPQESQCEGKCVLGIKGEPVAIGKLERFVADWARENGIDLSETEEKKGKKVAVIGSGPAGLTCAGDL  159 (464)
T ss_pred             HHhCCchhhhhccCCCCCChHHHhcCCCCCCCeehhHHHHHHHHHHHHcCCCCCCCcCCCCCEEEEECcCHHHHHHHHHH
Confidence            4689999999999998  9999999997  7888888888776531        12234578999999999999999999


Q ss_pred             HHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCC
Q 011351           71 VEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEK  150 (488)
Q Consensus        71 ~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~  150 (488)
                      ++.|+   +|+|+|+++.....   +.  +-.+.    .+++..      .......+++++.++++++++.+      .
T Consensus       160 ~~~G~---~V~v~e~~~~~GG~---l~--~gip~----~~l~~~------~~~~~~~~~~~~~gv~i~~~~~v------~  215 (464)
T PRK12831        160 AKMGY---DVTIFEALHEPGGV---LV--YGIPE----FRLPKE------TVVKKEIENIKKLGVKIETNVVV------G  215 (464)
T ss_pred             HhCCC---eEEEEecCCCCCCe---ee--ecCCC----ccCCcc------HHHHHHHHHHHHcCCEEEcCCEE------C
Confidence            99987   89999987643210   00  00010    111100      00122346778899999988644      1


Q ss_pred             cEEEeCCC-cEEEeccEEeccCC-CCCcCCCCCCCCCCcEEEecCHHHHHHHHH--------hhhcCCeEEEECCCHHHH
Q 011351          151 QTLITNSG-KLLKYGSLIVATGC-TASRFPEKIGGYLPGVHYIRDVADADALIS--------SLEKAKKVVVVGGGYIGM  220 (488)
Q Consensus       151 ~~v~~~~g-~~i~yd~lVlAtG~-~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~--------~~~~~~~vvVvG~G~~g~  220 (488)
                      +.+.+++. +.+.||+||||||+ .++ .++++|.+.+++++..++.....+..        ....+++|+|||+|.+|+
T Consensus       216 ~~v~~~~~~~~~~~d~viiAtGa~~~~-~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~  294 (464)
T PRK12831        216 KTVTIDELLEEEGFDAVFIGSGAGLPK-FMGIPGENLNGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAM  294 (464)
T ss_pred             CcCCHHHHHhccCCCEEEEeCCCCCCC-CCCCCCcCCcCcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHH
Confidence            23333332 23579999999998 465 45678877888877655444322211        124679999999999999


Q ss_pred             HHHHHHHhCCCcEEEEecCCc-CcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC----------
Q 011351          221 EVAAAAVGWKLDTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE----------  289 (488)
Q Consensus       221 e~A~~l~~~g~~v~lv~~~~~-~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~----------  289 (488)
                      |+|..+.++|.+|+++++.+. .++    ... ..+ +.+++.||++++++.++++..++++++.++.+.          
T Consensus       295 d~A~~l~r~Ga~Vtlv~r~~~~~m~----a~~-~e~-~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~  368 (464)
T PRK12831        295 DAARTALRLGAEVHIVYRRSEEELP----ARV-EEV-HHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDAS  368 (464)
T ss_pred             HHHHHHHHcCCEEEEEeecCcccCC----CCH-HHH-HHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCC
Confidence            999999999999999998653 222    111 122 235678999999999999976556666655442          


Q ss_pred             --------CCc--EEEcCEEEEeecCccCChhhhh-cCCccc-CCCEEeCCC-CCCCCCCEEEEceecccCCccCCcccc
Q 011351          290 --------DGS--TIDADTIVIGIGAKPTVSPFER-VGLNSS-VGGIQVDGQ-FRTRMPGIFAIGDVAAFPLKMYDRTAR  356 (488)
Q Consensus       290 --------~g~--~i~~D~vi~a~G~~p~~~~~~~-~gl~~~-~g~i~vd~~-~~t~~~~Ifa~GD~a~~~~~~~~~~~~  356 (488)
                              +|+  ++++|.||+++|+.|+..++.. .++..+ +|+|.||++ ++|+.|+|||+|||+..+.        
T Consensus       369 Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~Ts~pgVfAaGD~~~g~~--------  440 (464)
T PRK12831        369 GRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLISSTTKGLKINKRGCIVADEETGLTSKEGVFAGGDAVTGAA--------  440 (464)
T ss_pred             CCccceecCCceEEEECCEEEECCCCCCChhhhcccCCceECCCCcEEECCCCCccCCCCEEEeCCCCCCch--------
Confidence                    222  6999999999999999888776 677765 578999997 9999999999999986432        


Q ss_pred             cccHHHHHHHHHHHHHHHhc
Q 011351          357 VEHVDHARQSAQHCIKALLS  376 (488)
Q Consensus       357 ~~~~~~A~~~g~~~a~~i~~  376 (488)
                        .+..|..+|+.+|.+|..
T Consensus       441 --~v~~Ai~~G~~AA~~I~~  458 (464)
T PRK12831        441 --TVILAMGAGKKAAKAIDE  458 (464)
T ss_pred             --HHHHHHHHHHHHHHHHHH
Confidence              455688889998888753

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-39  Score=300.39  Aligned_cols=406  Identities=23%  Similarity=0.356  Sum_probs=314.6

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCC--
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQT--  126 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  126 (488)
                      +++...+|||+|.+..+++...+.... +..+.+|+.++..||.||+|++.+++..+..+..-..|..+.|++....+  
T Consensus       176 p~hvp~liigggtaAfaa~rai~s~da-~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffep  254 (659)
T KOG1346|consen  176 PKHVPYLIIGGGTAAFAAFRAIKSNDA-TAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEP  254 (659)
T ss_pred             cccCceeEEcCCchhhhcccccccCCC-CceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEecC
Confidence            345679999999998888888776654 77999999999999999999998887666554443345555555432221  


Q ss_pred             HhHH---------HHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCC---CCCCcEEEecCH
Q 011351          127 PEWY---------KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIG---GYLPGVHYIRDV  194 (488)
Q Consensus       127 ~~~~---------~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g---~~~~gv~~~~~~  194 (488)
                      ..+|         ..-|+.+..+-.|..||.+.+.|+++||.+|.||+++||||.+|..++.+..   .-...+.+++..
T Consensus       255 d~FfvspeDLp~~~nGGvAvl~G~kvvkid~~d~~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~A~~evk~kit~fr~p  334 (659)
T KOG1346|consen  255 DGFFVSPEDLPKAVNGGVAVLRGRKVVKIDEEDKKVILNDGTTIGYDKCLIATGVRPKKLQVFEEASEEVKQKITYFRYP  334 (659)
T ss_pred             CcceeChhHCcccccCceEEEeccceEEeecccCeEEecCCcEeehhheeeecCcCcccchhhhhcCHHhhhheeEEecc
Confidence            1122         2237888999999999999999999999999999999999999987664422   224567888988


Q ss_pred             HHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhC----CCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCC
Q 011351          195 ADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW----KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGA  270 (488)
Q Consensus       195 ~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~----g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~  270 (488)
                      .|.+++.......++|.|||+|++|.|+|+.|.+.    |.+|+-+......+...+++.++++-.+.+++.||.++.+.
T Consensus       335 ~DF~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna  414 (659)
T KOG1346|consen  335 ADFKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNA  414 (659)
T ss_pred             hHHHHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCceeccch
Confidence            99988888777889999999999999999999764    66888887888888888888999999999999999999999


Q ss_pred             eEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcCCccc--CCCEEeCCCCCCCCCCEEEEceecccCC
Q 011351          271 SIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS--VGGIQVDGQFRTRMPGIFAIGDVAAFPL  348 (488)
Q Consensus       271 ~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~--~g~i~vd~~~~t~~~~Ifa~GD~a~~~~  348 (488)
                      .|.++... .+.+ .+.++||.++..|+||+|+|-.||+++++..||+.|  -||+.||..++.. .|||++||++.+.+
T Consensus       415 ~v~sv~~~-~~nl-~lkL~dG~~l~tD~vVvavG~ePN~ela~~sgLeiD~~lGGfrvnaeL~ar-~NvwvAGdaacF~D  491 (659)
T KOG1346|consen  415 KVESVRKC-CKNL-VLKLSDGSELRTDLVVVAVGEEPNSELAEASGLEIDEKLGGFRVNAELKAR-ENVWVAGDAACFED  491 (659)
T ss_pred             hhhhhhhh-ccce-EEEecCCCeeeeeeEEEEecCCCchhhcccccceeecccCcEEeeheeecc-cceeeecchhhhhc
Confidence            99998754 3333 588999999999999999999999999999999876  4899999998874 79999999999999


Q ss_pred             ccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCCCCceeEeccccCCCCcc----ee---eEEeeCCC-----CcEE-
Q 011351          349 KMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRK----VW---WQFFGDNV-----GETI-  415 (488)
Q Consensus       349 ~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~~~~~~p~~~~~~~~~~g~~~~----~~---~~~~g~~~-----~~~~-  415 (488)
                      ...|+. +++||.+|...|+.+.+||.+ ...+|.....||++....-|..+.    ..   +-.+..+.     .++. 
T Consensus       492 ~~LGrR-RVehhdhavvSGRLAGENMtg-Aakpy~hqsmFWsdlgP~igyeaIGlvDSSLpTVgVfA~p~s~~~~~~~se  569 (659)
T KOG1346|consen  492 GVLGRR-RVEHHDHAVVSGRLAGENMTG-AAKPYKHQSMFWSDLGPEIGYEAIGLVDSSLPTVGVFALPSSATRVDQLSE  569 (659)
T ss_pred             ccccce-eccccccceeeceeccccccc-ccCCccccceeeeccCcccccceeeecccCCCcceeeeccccccchhhhhh
Confidence            888864 478999999999999999986 556888888999974322111000    00   00111111     0000 


Q ss_pred             --------------------------------EEccCCCcEEEEEEECCEEEEEEeecCChHHhhHHHHHHhcCCCCC
Q 011351          416 --------------------------------EIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVD  461 (488)
Q Consensus       416 --------------------------------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  461 (488)
                                                      ..++-..|-+.||++|++|||++| .+--..+...|..|..+...|
T Consensus       570 ~sdt~v~~~s~s~s~ss~~~~~~s~~~v~~~P~e~~~ygKgViFYl~d~~iVGilL-wN~Fnr~~~AR~II~d~kk~d  646 (659)
T KOG1346|consen  570 SSDTDVPETSTSSSQSSKSDAGASQDGVTCDPDEAGNYGKGVIFYLKDDKIVGILL-WNLFNRIGLARTIINDNKKYD  646 (659)
T ss_pred             ccCCCCccccccccccccccCCcCCCCCccCcccccccCceEEEEecCCcEEEEEe-hhhhccchhhHHHhccccchh
Confidence                                            000112366889999999999997 455557888899997776654

>PTZ00052 thioredoxin reductase; Provisional

Probab=100.00  E-value=7.1e-38  Score=320.44  Aligned_cols=393  Identities=18%  Similarity=0.197  Sum_probs=255.2

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC----C----CCCC---C-CCCCcccc---------------CC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA----Y----APYE---R-PALTKGYL---------------FP  103 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~----~----~~~~---~-~~l~~~~~---------------~~  103 (488)
                      ++||+||||||||++||..++++|.   +|+|||+.+    .    ....   + +-.++.++               +.
T Consensus         5 ~yDviVIG~GpaG~~AA~~aa~~G~---~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g   81 (499)
T PTZ00052          5 MYDLVVIGGGSGGMAAAKEAAAHGK---KVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYG   81 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC---eEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCC
Confidence            5899999999999999999999987   899999632    1    1100   0 00011000               00


Q ss_pred             CC-CCCCCCCCcccc---cCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCC---CcEEEeccEEeccCCCCCc
Q 011351          104 LD-KKPARLPGFHTC---VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNS---GKLLKYGSLIVATGCTASR  176 (488)
Q Consensus       104 ~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~---g~~i~yd~lVlAtG~~~~~  176 (488)
                      .. ....++..+...   ............++..+++++.+ ++.-  .+.++|.+.+   ++.+.||+||||||+.|..
T Consensus        82 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g-~a~~--~~~~~v~v~~~~~~~~i~~d~lIIATGs~p~~  158 (499)
T PTZ00052         82 WKTSSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYING-LAKL--KDEHTVSYGDNSQEETITAKYILIATGGRPSI  158 (499)
T ss_pred             CCCCCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEE-EEEE--ccCCEEEEeeCCCceEEECCEEEEecCCCCCC
Confidence            00 000000000000   00000000111223356777764 3332  2345665532   3479999999999999874


Q ss_pred             CCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHH
Q 011351          177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE  256 (488)
Q Consensus       177 ~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~  256 (488)
                      ++.+++...    ...   .++.+......+++++|||+|.+|+|+|..|+++|.+|+++.+. .+++ .+++++.+.++
T Consensus       159 p~~i~G~~~----~~~---~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l~-~~d~~~~~~l~  229 (499)
T PTZ00052        159 PEDVPGAKE----YSI---TSDDIFSLSKDPGKTLIVGASYIGLETAGFLNELGFDVTVAVRS-IPLR-GFDRQCSEKVV  229 (499)
T ss_pred             CCCCCCccc----eee---cHHHHhhhhcCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-cccc-cCCHHHHHHHH
Confidence            323444321    111   23333333345789999999999999999999999999999874 6665 48999999999


Q ss_pred             HHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhh--hhcCCccc-CCCEEeCCCCCCC
Q 011351          257 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLNSS-VGGIQVDGQFRTR  333 (488)
Q Consensus       257 ~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~--~~~gl~~~-~g~i~vd~~~~t~  333 (488)
                      +.|++.||++++++.+++++..+ +. ..+.+.+|+++++|.|++++|++||++++  ++++++.+ +|++.+++. +|+
T Consensus       230 ~~l~~~GV~i~~~~~v~~v~~~~-~~-~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~-~Ts  306 (499)
T PTZ00052        230 EYMKEQGTLFLEGVVPINIEKMD-DK-IKVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND-CTN  306 (499)
T ss_pred             HHHHHcCCEEEcCCeEEEEEEcC-Ce-EEEEECCCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC-cCC
Confidence            99999999999999999997543 33 34677888899999999999999999875  67888775 466777766 999


Q ss_pred             CCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCCCCceeEeccccCCCCcceeeEEeeCCC
Q 011351          334 MPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNV  411 (488)
Q Consensus       334 ~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~  411 (488)
                      .|+|||+|||+....         ..+..|.++|+.+|+||++....  .+..+|+.   .|..+-      +..+|...
T Consensus       307 ~p~IyAiGDv~~~~~---------~l~~~A~~~g~~aa~ni~g~~~~~~~~~~~p~~---ift~p~------ia~vGlte  368 (499)
T PTZ00052        307 IPNIFAVGDVVEGRP---------ELTPVAIKAGILLARRLFKQSNEFIDYTFIPTT---IFTPIE------YGACGYSS  368 (499)
T ss_pred             CCCEEEEEEecCCCc---------ccHHHHHHHHHHHHHHHhCCCCCcCccccCCeE---EecCCc------ceeecCCH
Confidence            999999999996221         14567999999999999974322  34445653   232110      11222110


Q ss_pred             C----------------------------cEEE---Ecc-----CCCcEEEEEEE---CCEEEEEEeecCChHHhhHHHH
Q 011351          412 G----------------------------ETIE---IGN-----FDPKIATFWID---SGKLKGVLVESGSPEEFQLLPT  452 (488)
Q Consensus       412 ~----------------------------~~~~---~~~-----~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~  452 (488)
                      .                            ....   .+.     ....|.++.++   +++|+|+++++.++.++...-.
T Consensus       369 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~~IlG~~ivg~~A~elI~~~~  448 (499)
T PTZ00052        369 EAAIAKYGEDDIEEYLQEFNTLEIAAVHREKHERARKDEYDFDVSSNCLAKLVCVKSEDNKVVGFHFVGPNAGEITQGFS  448 (499)
T ss_pred             HHHHHhcCCCCEEEEEeecccchhhccccccccccccccccccccCCceEEEEEecCCCCEEEEEEEECCCHHHHHHHHH
Confidence            0                            0000   000     02447777653   5999999998888888775544


Q ss_pred             -HHhcCCCCC-h-hhhcCCCcHHHHHHHHH
Q 011351          453 -LARSQPFVD-K-AKLQQASSVEEALEIAR  479 (488)
Q Consensus       453 -~~~~~~~~~-~-~~~~~~~~~~~~~~~~~  479 (488)
                       +|+++.+++ . ..++.|||++|++..+.
T Consensus       449 ~ai~~~~t~~~l~~~~~~hPt~sE~~~~~~  478 (499)
T PTZ00052        449 LALKLGAKKSDFDSMIGIHPTDAEVFMNLS  478 (499)
T ss_pred             HHHHCCCCHHHHhcccccCCCCchhhEEEE
Confidence             578888876 3 34588999999987653

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=100.00  E-value=1.2e-37  Score=309.10  Aligned_cols=293  Identities=23%  Similarity=0.327  Sum_probs=227.8

Q ss_pred             eEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHHH
Q 011351           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKE  132 (488)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (488)
                      +|||||||+||+.+|.+|+++..++.+|+|||++++++|.. .++. ++.. .....++           .....+++++
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~-~~~~-~~~g-~~~~~~~-----------~~~~~~~~~~   66 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSG-MLPG-MIAG-HYSLDEI-----------RIDLRRLARQ   66 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccc-hhhH-HHhe-eCCHHHh-----------cccHHHHHHh
Confidence            58999999999999999976533467999999999988873 3321 2211 1111111           1234567778


Q ss_pred             CCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHH----HHHhh---h
Q 011351          133 KGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADA----LISSL---E  205 (488)
Q Consensus       133 ~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~----~~~~~---~  205 (488)
                      .+++++.+ +|+.+|+++++|.+++|+++.||+||||||+.+. .|.++| ..++++.+++..++..    +.+..   .
T Consensus        67 ~gv~~~~~-~v~~id~~~~~V~~~~g~~~~yD~LviAtG~~~~-~~~i~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (364)
T TIGR03169        67 AGARFVIA-EATGIDPDRRKVLLANRPPLSYDVLSLDVGSTTP-LSGVEG-AADLAVPVKPIENFLARWEALLESADAPP  143 (364)
T ss_pred             cCCEEEEE-EEEEEecccCEEEECCCCcccccEEEEccCCCCC-CCCCCc-ccccccccCCHHHHHHHHHHHHHHHhcCC
Confidence            89999874 8999999999999999988999999999999987 455666 3456666777666654    33322   1


Q ss_pred             cCCeEEEECCCHHHHHHHHHHHh----CC--CcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCC
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVG----WK--LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS  279 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~----~g--~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~  279 (488)
                      ..++++|+|+|.+|+|+|..|.+    .+  .+|+++ ..+.+++. +++.+...+++.|++.||++++++.+++++.+ 
T Consensus       144 ~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l~~-~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~-  220 (364)
T TIGR03169       144 GTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLLPG-FPAKVRRLVLRLLARRGIEVHEGAPVTRGPDG-  220 (364)
T ss_pred             CCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCccccc-CCHHHHHHHHHHHHHCCCEEEeCCeeEEEcCC-
Confidence            45799999999999999999975    34  479998 66677764 78889999999999999999999999998632 


Q ss_pred             CCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCCCCCC-CCCCEEEEceecccCCccCCccccc
Q 011351          280 DGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRT-RMPGIFAIGDVAAFPLKMYDRTARV  357 (488)
Q Consensus       280 ~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t-~~~~Ifa~GD~a~~~~~~~~~~~~~  357 (488)
                           .+.+++|+++++|.+|+|+|.+|+ .++...++..+ +|++.||+++|| ++|||||+|||+..+....     .
T Consensus       221 -----~v~~~~g~~i~~D~vi~a~G~~p~-~~l~~~gl~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~~~~-----~  289 (364)
T TIGR03169       221 -----ALILADGRTLPADAILWATGARAP-PWLAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITDAPR-----P  289 (364)
T ss_pred             -----eEEeCCCCEEecCEEEEccCCChh-hHHHHcCCCcCCCCeEEECCccccCCCCCEEEeeeeeecCCCCC-----C
Confidence                 467788999999999999999998 56677777764 688999999998 9999999999998654322     1


Q ss_pred             ccHHHHHHHHHHHHHHHhc
Q 011351          358 EHVDHARQSAQHCIKALLS  376 (488)
Q Consensus       358 ~~~~~A~~~g~~~a~~i~~  376 (488)
                      .....|..||+.+|+||..
T Consensus       290 ~~~~~A~~~g~~~a~ni~~  308 (364)
T TIGR03169       290 KAGVYAVRQAPILAANLRA  308 (364)
T ss_pred             CchHHHHHhHHHHHHHHHH
Confidence            2445689999999999864

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=100.00  E-value=5.2e-37  Score=330.96  Aligned_cols=332  Identities=19%  Similarity=0.188  Sum_probs=238.5

Q ss_pred             cccccccceeeccccC--CCCcccceeccccccccccccccccc---------------cc-cCCCCCeEEEEcCchHHH
Q 011351            3 SVSNSLSFKHGLSLWC--PQSPSLHRIRHSSAKNFQRRGFVVAY---------------SS-FANENREFVIVGGGNAAG   64 (488)
Q Consensus         3 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~-~~~~~~~vvIIGgG~AGl   64 (488)
                      ..+|||+++||++|++  +|+.+|.+...++.++...|+..+..               .+ .....++|+|||||||||
T Consensus       240 ~~~np~p~~~GrVCp~~~~CE~~C~~~~~pV~I~~ler~i~d~~~~~~~~~~~~~~~~~~~~~~~~gkkVaVIGsGPAGL  319 (944)
T PRK12779        240 ESCNPLPNVTGRVCPQELQCQGVCTHTKRPIEIGQLEWYLPQHEKLVNPNANERFAGRISPWAAAVKPPIAVVGSGPSGL  319 (944)
T ss_pred             HHhCChhHHhcCcCCCccCHHHhccCCCcCcchhHHHHHHHHHHHhhchhhhhcccccccccccCCCCeEEEECCCHHHH
Confidence            4789999999999999  79999999888888888877766541               11 123568999999999999


Q ss_pred             HHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHHHCCCeEEeCCcEE
Q 011351           65 YAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVT  144 (488)
Q Consensus        65 ~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~  144 (488)
                      +||..|++.|+   +|||+|+.+.....   +.  |-.+.    .+++.       +...+..+.++..|++++.++.+ 
T Consensus       320 saA~~Lar~G~---~VtVfE~~~~~GG~---l~--yGIP~----~rlp~-------~vi~~~i~~l~~~Gv~f~~n~~v-  379 (944)
T PRK12779        320 INAYLLAVEGF---PVTVFEAFHDLGGV---LR--YGIPE----FRLPN-------QLIDDVVEKIKLLGGRFVKNFVV-  379 (944)
T ss_pred             HHHHHHHHCCC---eEEEEeeCCCCCce---EE--ccCCC----CcChH-------HHHHHHHHHHHhhcCeEEEeEEe-
Confidence            99999999998   89999988653210   00  11111    11110       00122345677789999987543 


Q ss_pred             EEeCCCcEEEeCCCcEEEeccEEeccCCC-CCcCCCCCCCCCCcEEEecCHHHHHHHHHh----------hhcCCeEEEE
Q 011351          145 SIDIEKQTLITNSGKLLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADADALISS----------LEKAKKVVVV  213 (488)
Q Consensus       145 ~id~~~~~v~~~~g~~i~yd~lVlAtG~~-~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~----------~~~~~~vvVv  213 (488)
                           .+.+++++.....||+|+||||+. ++ .++++|.+.+|+++..++.........          ...+++|+||
T Consensus       380 -----G~dit~~~l~~~~yDAV~LAtGA~~pr-~l~IpG~dl~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVI  453 (944)
T PRK12779        380 -----GKTATLEDLKAAGFWKIFVGTGAGLPT-FMNVPGEHLLGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVI  453 (944)
T ss_pred             -----ccEEeHHHhccccCCEEEEeCCCCCCC-cCCCCCCcCcCcEEHHHHHHHHHhhccccccccccccccCCCEEEEE
Confidence                 345666666556899999999995 54 456788888898876655443322111          1257899999


Q ss_pred             CCCHHHHHHHHHHHhCCCcEEEEecCCc-CcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCC-CCcEEEEEe---
Q 011351          214 GGGYIGMEVAAAAVGWKLDTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS-DGRVAAVKL---  288 (488)
Q Consensus       214 G~G~~g~e~A~~l~~~g~~v~lv~~~~~-~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~-~~~v~~v~l---  288 (488)
                      |||.+|+|+|..+.++|.+|+++.+++. .++     .....+.. ..+.||+++++..++++..++ ++.+.++.+   
T Consensus       454 GGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mp-----a~~~e~~~-a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~  527 (944)
T PRK12779        454 GGGNTAMDAARTAKRLGGNVTIVYRRTKSEMP-----ARVEELHH-ALEEGINLAVLRAPREFIGDDHTHFVTHALLDVN  527 (944)
T ss_pred             CCCHHHHHHHHHHHHcCCEEEEEEecCccccc-----ccHHHHHH-HHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEE
Confidence            9999999999999999999999988753 222     22223333 346799999999999997542 334544432   


Q ss_pred             ------C--------CC--cEEEcCEEEEeecCccCChhhh-hcCCccc-CCCEEeCC-CCCCCCCCEEEEceecccCCc
Q 011351          289 ------E--------DG--STIDADTIVIGIGAKPTVSPFE-RVGLNSS-VGGIQVDG-QFRTRMPGIFAIGDVAAFPLK  349 (488)
Q Consensus       289 ------~--------~g--~~i~~D~vi~a~G~~p~~~~~~-~~gl~~~-~g~i~vd~-~~~t~~~~Ifa~GD~a~~~~~  349 (488)
                            .        +|  .+++||.||+|+|+.|+..+.. ..+++.+ +|.|.||+ +++|+.|+|||+|||+..+. 
T Consensus       528 ~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l~~~~~gle~~~~G~I~vd~~~~~Ts~pgVFAaGD~~~G~~-  606 (944)
T PRK12779        528 ELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIMKDAEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAARGGS-  606 (944)
T ss_pred             EeccccCcCceeeecCCceEEEECCEEEEcCCcCCChhhhhcccCceECCCCCEEECCCCCccCCCCEEEEEcCCCChH-
Confidence                  1        12  3699999999999999865432 3467655 57799997 58999999999999997432 


Q ss_pred             cCCcccccccHHHHHHHHHHHHHHHhc
Q 011351          350 MYDRTARVEHVDHARQSAQHCIKALLS  376 (488)
Q Consensus       350 ~~~~~~~~~~~~~A~~~g~~~a~~i~~  376 (488)
                               .+..|..+|+.||.+|..
T Consensus       607 ---------~vv~Ai~eGr~AA~~I~~  624 (944)
T PRK12779        607 ---------TAIRAAGDGQAAAKEIVG  624 (944)
T ss_pred             ---------HHHHHHHHHHHHHHHHHH
Confidence                     345688899999988865

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=100.00  E-value=3.6e-37  Score=313.46  Aligned_cols=331  Identities=23%  Similarity=0.247  Sum_probs=230.1

Q ss_pred             cccccccceeeccccCC--CCcccceec--cccccccccccccccc--------cccCCCCCeEEEEcCchHHHHHHHHH
Q 011351            3 SVSNSLSFKHGLSLWCP--QSPSLHRIR--HSSAKNFQRRGFVVAY--------SSFANENREFVIVGGGNAAGYAARTF   70 (488)
Q Consensus         3 ~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~--------~~~~~~~~~vvIIGgG~AGl~aA~~L   70 (488)
                      -++|||+.+||++|.++  |+..|.+..  .+++++...++.....        .+.....++|+|||||+||+++|..|
T Consensus        80 ~~~~p~~~~~g~vc~~~~~C~~~C~~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgGpaGl~aA~~l  159 (457)
T PRK11749         80 LETNPLPAVCGRVCPQERLCEGACVRGKKGEPVAIGRLERYITDWAMETGWVLFKRAPKTGKKVAVIGAGPAGLTAAHRL  159 (457)
T ss_pred             HHhCCchhhhcCcCCCccCHHHHhcCCCCCCCcchHHHHHHHHHHHHhcCCCCCCCCccCCCcEEEECCCHHHHHHHHHH
Confidence            46899999999999998  999999876  5566666555444321        22234568999999999999999999


Q ss_pred             HHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCC
Q 011351           71 VEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEK  150 (488)
Q Consensus        71 ~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~  150 (488)
                      ++.|+   +|+|+|+++.....   +.  +..+....+..           ......+++++.+++++.++.+.      
T Consensus       160 ~~~g~---~V~lie~~~~~gG~---l~--~gip~~~~~~~-----------~~~~~~~~l~~~gv~~~~~~~v~------  214 (457)
T PRK11749        160 ARKGY---DVTIFEARDKAGGL---LR--YGIPEFRLPKD-----------IVDREVERLLKLGVEIRTNTEVG------  214 (457)
T ss_pred             HhCCC---eEEEEccCCCCCcE---ee--ccCCCccCCHH-----------HHHHHHHHHHHcCCEEEeCCEEC------
Confidence            99987   89999988653210   00  00010000000           01233466778899999876541      


Q ss_pred             cEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHH---HhhhcCCeEEEECCCHHHHHHHHHHH
Q 011351          151 QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALI---SSLEKAKKVVVVGGGYIGMEVAAAAV  227 (488)
Q Consensus       151 ~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~---~~~~~~~~vvVvG~G~~g~e~A~~l~  227 (488)
                      +.+.+++.. +.||+||+|||+.....+.++|.+.+++.+..+........   .....+++++|||+|.+|+|+|..+.
T Consensus       215 ~~v~~~~~~-~~~d~vvlAtGa~~~~~~~i~G~~~~gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~  293 (457)
T PRK11749        215 RDITLDELR-AGYDAVFIGTGAGLPRFLGIPGENLGGVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAK  293 (457)
T ss_pred             CccCHHHHH-hhCCEEEEccCCCCCCCCCCCCccCCCcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHH
Confidence            223333333 78999999999863334456676666766543222221110   11236799999999999999999999


Q ss_pred             hCCC-cEEEEecCCc-CcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe-----------------
Q 011351          228 GWKL-DTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL-----------------  288 (488)
Q Consensus       228 ~~g~-~v~lv~~~~~-~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l-----------------  288 (488)
                      +.|. +|+++++.+. .++.  ..    ...+.+++.||++++++.+.++..++ +.+.+|.+                 
T Consensus       294 ~~G~~~Vtlv~~~~~~~~~~--~~----~~~~~~~~~GV~i~~~~~v~~i~~~~-~~~~~v~~~~~~~~~~~~~g~~~~~  366 (457)
T PRK11749        294 RLGAESVTIVYRRGREEMPA--SE----EEVEHAKEEGVEFEWLAAPVEILGDE-GRVTGVEFVRMELGEPDASGRRRVP  366 (457)
T ss_pred             HcCCCeEEEeeecCcccCCC--CH----HHHHHHHHCCCEEEecCCcEEEEecC-CceEEEEEEEEEecCcCCCCCcccC
Confidence            9987 8999998754 2321  11    23456788999999999999998543 33223332                 


Q ss_pred             --CCCcEEEcCEEEEeecCccCChhhh-hcCCccc-CCCEEeCC-CCCCCCCCEEEEceecccCCccCCcccccccHHHH
Q 011351          289 --EDGSTIDADTIVIGIGAKPTVSPFE-RVGLNSS-VGGIQVDG-QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHA  363 (488)
Q Consensus       289 --~~g~~i~~D~vi~a~G~~p~~~~~~-~~gl~~~-~g~i~vd~-~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A  363 (488)
                        .+++++++|.||+++|.+|+..++. ..++..+ +|+|.||+ +++|+.|+|||+|||+..+.          .+..|
T Consensus       367 ~~g~~~~i~~D~vi~a~G~~p~~~l~~~~~gl~~~~~g~i~vd~~~~~Ts~~~VfA~GD~~~~~~----------~~~~A  436 (457)
T PRK11749        367 IEGSEFTLPADLVIKAIGQTPNPLILSTTPGLELNRWGTIIADDETGRTSLPGVFAGGDIVTGAA----------TVVWA  436 (457)
T ss_pred             CCCceEEEECCEEEECccCCCCchhhccccCccCCCCCCEEeCCCCCccCCCCEEEeCCcCCCch----------HHHHH
Confidence              1234799999999999999977764 4566654 67899998 89999999999999995321          45578


Q ss_pred             HHHHHHHHHHHhc
Q 011351          364 RQSAQHCIKALLS  376 (488)
Q Consensus       364 ~~~g~~~a~~i~~  376 (488)
                      ..+|+.+|.+|..
T Consensus       437 ~~~G~~aA~~I~~  449 (457)
T PRK11749        437 VGDGKDAAEAIHE  449 (457)
T ss_pred             HHHHHHHHHHHHH
Confidence            8999999988864

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=1.1e-36  Score=280.24  Aligned_cols=403  Identities=20%  Similarity=0.352  Sum_probs=276.7

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC----CCCCccccCCCC------------------CC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER----PALTKGYLFPLD------------------KK  107 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~----~~l~~~~~~~~~------------------~~  107 (488)
                      ..+|++|||+||+|..||.+.++.|+   +-+.||++......-    +--|+.++...+                  ..
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQlGl---kTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~  114 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQLGL---KTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSV  114 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHhcc---eeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccce
Confidence            57999999999999999999999998   688899976543110    000111111100                  00


Q ss_pred             CCCCCCcccc---cCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCc--EEEeccEEeccCCCCCcCCCCCC
Q 011351          108 PARLPGFHTC---VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKIG  182 (488)
Q Consensus       108 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~--~i~yd~lVlAtG~~~~~~~~~~g  182 (488)
                      ..+++.+...   ..+....-....++++++++..+ .-.-++|..-++.-.||+  .+.++++|||||+.-..+|   |
T Consensus       115 ~~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG-~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGSeV~~~P---G  190 (506)
T KOG1335|consen  115 SLDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKG-FGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGSEVTPFP---G  190 (506)
T ss_pred             ecCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEee-eEeecCCceEEEeccCCCceEEeeeeEEEEeCCccCCCC---C
Confidence            0111000000   00000111223456667777765 233355554455555664  5899999999999644333   3


Q ss_pred             CCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHc
Q 011351          183 GYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN  262 (488)
Q Consensus       183 ~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~  262 (488)
                      ..+++-....    +.......+-+++++|+|+|.+|+|++....++|.+||+++..+.+.+. +|.++++.+++.|++.
T Consensus       191 I~IDekkIVS----StgALsL~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~-mD~Eisk~~qr~L~kQ  265 (506)
T KOG1335|consen  191 ITIDEKKIVS----STGALSLKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV-MDGEISKAFQRVLQKQ  265 (506)
T ss_pred             eEecCceEEe----cCCccchhhCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc-cCHHHHHHHHHHHHhc
Confidence            3232211111    2222233356899999999999999999999999999999999999986 8999999999999999


Q ss_pred             CcEEEcCCeEEEEEeCCCCcEEEEEeCC---C--cEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCCCCCC
Q 011351          263 GVKFVKGASIKNLEAGSDGRVAAVKLED---G--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRM  334 (488)
Q Consensus       263 GV~v~~~~~v~~i~~~~~~~v~~v~l~~---g--~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~  334 (488)
                      |++|++++++...+.+.++.+ .+.+++   +  ++++||.+++++|++|-+.-  +++.|++.| ++++.||..++|.+
T Consensus       266 gikF~l~tkv~~a~~~~dg~v-~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~~f~t~v  344 (506)
T KOG1335|consen  266 GIKFKLGTKVTSATRNGDGPV-EIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNTRFQTKV  344 (506)
T ss_pred             CceeEeccEEEEeeccCCCce-EEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceeccccccccC
Confidence            999999999999998877754 455543   2  47999999999999998764  577788766 67899999999999


Q ss_pred             CCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCC-CCCCCCCCceeEeccccCCCCcceeeEEeeCCCCc
Q 011351          335 PGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ-THTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE  413 (488)
Q Consensus       335 ~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~-~~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~  413 (488)
                      |+||++||+...|+          ...-|..+|-.+.+.|.++. ...|.-+|-   ..|.++-      +.++|..+.+
T Consensus       345 P~i~~IGDv~~gpM----------LAhkAeeegI~~VE~i~g~~~hv~ynciP~---v~ythPE------vawVG~TEeq  405 (506)
T KOG1335|consen  345 PHIYAIGDVTLGPM----------LAHKAEEEGIAAVEGIAGGHGHVDYNCIPS---VVYTHPE------VAWVGKTEEQ  405 (506)
T ss_pred             CceEEecccCCcch----------hhhhhhhhchhheeeecccCcccccCCCCc---eeecccc------eeeeccchhh
Confidence            99999999998765          23348889988888887654 345666663   4455442      2334444321


Q ss_pred             E------EEEccC-------------CCcEEEEEE--ECCEEEEEEeecCChHHhhHHHHH-HhcCCCCC-hhhh-cCCC
Q 011351          414 T------IEIGNF-------------DPKIATFWI--DSGKLKGVLVESGSPEEFQLLPTL-ARSQPFVD-KAKL-QQAS  469 (488)
Q Consensus       414 ~------~~~~~~-------------~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~-~~~~  469 (488)
                      +      +..|.|             ...|+++..  +++||+|++++++++.++.+-..| +..+.... ...+ +.||
T Consensus       406 lkeegi~y~vgkfpF~aNsRaktn~d~eg~vKvl~d~~tdkiLGvHiigp~AgEli~EA~lAieyGasaeDvarvchaHP  485 (506)
T KOG1335|consen  406 LKEEGIKYKVGKFPFSANSRAKTNNDTEGFVKVLADKETDKILGVHIIGPNAGELIHEASLAIEYGASAEDVARVCHAHP  485 (506)
T ss_pred             HHhcCcceEeeeccccccchhhccCCccceeEEEecCCCCcEEEEEEecCCHHHHHHHHHHHHHhCccHHHHhhccCCCC
Confidence            1      112221             134666655  469999999988888887765554 56666554 3444 9999


Q ss_pred             cHHHHHHHHHccCCc
Q 011351          470 SVEEALEIARAALPV  484 (488)
Q Consensus       470 ~~~~~~~~~~~~~~~  484 (488)
                      |++||+++|..++..
T Consensus       486 TlSEa~kEa~~aA~~  500 (506)
T KOG1335|consen  486 TLSEAFKEANMAAYD  500 (506)
T ss_pred             cHHHHHHHHHHHhhc
Confidence            999999999887654

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=100.00  E-value=1.6e-36  Score=323.42  Aligned_cols=326  Identities=20%  Similarity=0.224  Sum_probs=227.0

Q ss_pred             cccccccceeeccccCCCCcccceec--cccccccccccccccc-------c--cc-CCCCCeEEEEcCchHHHHHHHHH
Q 011351            3 SVSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVAY-------S--SF-ANENREFVIVGGGNAAGYAARTF   70 (488)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-------~--~~-~~~~~~vvIIGgG~AGl~aA~~L   70 (488)
                      -.+|||+.+||++|.++|+.+|.|..  .+++++...|+..+..       .  +. ....++|+||||||||++||..|
T Consensus       477 ~~~nPlp~icGrVC~h~Ce~~C~R~~~d~pV~I~~Lkr~a~d~~~~~~~~~~~~~~~~~~~kkVaIIGGGPAGLSAA~~L  556 (1012)
T TIGR03315       477 YDKNPLPAITGTICDHQCQYKCTRLDYDESVNIREMKKVAAEKGYDEYKTRWHKPQGKSSAHKVAVIGAGPAGLSAGYFL  556 (1012)
T ss_pred             HHhCChhhHhhCcCCcchHHHhcCCCCCCCCcccHHHHHHHhhHHHhcCccCCCCCCCCCCCcEEEECCCHHHHHHHHHH
Confidence            46899999999999999999999987  8888888887776531       1  11 23457999999999999999999


Q ss_pred             HHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCC
Q 011351           71 VEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEK  150 (488)
Q Consensus        71 ~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~  150 (488)
                      ++.|+   +|+|+|+++..... .  .  +..+..    +++.       +...+..+++...|++++++...       
T Consensus       557 Ar~G~---~VTV~Ek~~~lGG~-l--~--~~IP~~----rlp~-------e~l~~~ie~l~~~GVe~~~g~~~-------  610 (1012)
T TIGR03315       557 ARAGH---PVTVFEKKEKPGGV-V--K--NIIPEF----RISA-------ESIQKDIELVKFHGVEFKYGCSP-------  610 (1012)
T ss_pred             HHCCC---eEEEEecccccCce-e--e--eccccc----CCCH-------HHHHHHHHHHHhcCcEEEEeccc-------
Confidence            99987   89999998653211 0  0  011111    1110       00122345667789999886321       


Q ss_pred             cEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHH---hhhcCCeEEEECCCHHHHHHHHHHH
Q 011351          151 QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS---SLEKAKKVVVVGGGYIGMEVAAAAV  227 (488)
Q Consensus       151 ~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~---~~~~~~~vvVvG~G~~g~e~A~~l~  227 (488)
                       .+.+++.+...||+||||||+.+...+.++|.. +++.  ........+..   ....+++|+|||+|.+|+|+|..+.
T Consensus       611 -d~~ve~l~~~gYDaVIIATGA~~~~~l~I~G~~-~~v~--~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~  686 (1012)
T TIGR03315       611 -DLTVAELKNQGYKYVILAIGAWKHGPLRLEGGG-ERVL--KSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAAL  686 (1012)
T ss_pred             -ceEhhhhhcccccEEEECCCCCCCCCCCcCCCC-ccee--eHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHH
Confidence             122233334679999999999854434444432 2332  22222222211   2346899999999999999999988


Q ss_pred             hC-CC-cEEEEecCCc-CcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEE--E------------EeCC
Q 011351          228 GW-KL-DTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA--V------------KLED  290 (488)
Q Consensus       228 ~~-g~-~v~lv~~~~~-~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~--v------------~l~~  290 (488)
                      +. |. +|+++++++. .++. ..    ..+.+.+ +.||+++++..+.+++ +  +.+..  +            ...+
T Consensus       687 Rl~Ga~kVtLVyRr~~~~Mpa-~~----eEl~~al-eeGVe~~~~~~p~~I~-~--g~l~v~~~~l~~~d~sGr~~~v~~  757 (1012)
T TIGR03315       687 RVPGVEKVTVVYRRTKRYMPA-SR----EELEEAL-EDGVDFKELLSPESFE-D--GTLTCEVMKLGEPDASGRRRPVGT  757 (1012)
T ss_pred             HhCCCceEEEEEccCcccccc-CH----HHHHHHH-HcCCEEEeCCceEEEE-C--CeEEEEEEEeecccCCCceeeecC
Confidence            76 64 7999998763 3432 22    2344433 5699999998888886 1  22211  1            1112


Q ss_pred             C--cEEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCCC-CCCCCCCEEEEceecccCCccCCcccccccHHHHHHH
Q 011351          291 G--STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQ-FRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQS  366 (488)
Q Consensus       291 g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~-~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~  366 (488)
                      |  .+++||.||+|+|..|+.++++..++..+ +|++.||++ ++|+.|+|||+|||+..+.          .+..|+.+
T Consensus       758 Gee~~I~aD~VIvAiG~~Pnt~lle~~GL~ld~~G~I~VD~~~~~Ts~pgVFAaGD~a~GP~----------tVv~AIaq  827 (1012)
T TIGR03315       758 GETVDLPADTVIAAVGEQVDTDLLQKNGIPLDEYGWPVVNQATGETNITNVFVIGDANRGPA----------TIVEAIAD  827 (1012)
T ss_pred             CCeEEEEeCEEEEecCCcCChHHHHhcCcccCCCCCEEeCCCCCccCCCCEEEEeCcCCCcc----------HHHHHHHH
Confidence            3  36899999999999999999998888865 578999986 8999999999999986543          45679999


Q ss_pred             HHHHHHHHhcC
Q 011351          367 AQHCIKALLSA  377 (488)
Q Consensus       367 g~~~a~~i~~~  377 (488)
                      |+.||.+|++.
T Consensus       828 Gr~AA~nIl~~  838 (1012)
T TIGR03315       828 GRKAANAILSR  838 (1012)
T ss_pred             HHHHHHHHhcc
Confidence            99999999864

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=100.00  E-value=1.6e-36  Score=325.47  Aligned_cols=332  Identities=21%  Similarity=0.250  Sum_probs=238.9

Q ss_pred             cccccccceeeccccC--CCCcccceec---ccccccccccccccccc-------c--cCCCCCeEEEEcCchHHHHHHH
Q 011351            3 SVSNSLSFKHGLSLWC--PQSPSLHRIR---HSSAKNFQRRGFVVAYS-------S--FANENREFVIVGGGNAAGYAAR   68 (488)
Q Consensus         3 ~~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~-------~--~~~~~~~vvIIGgG~AGl~aA~   68 (488)
                      ..+|||+.+||++|.+  +|+.+|.+..   .++.+....|+..+...       |  .....++|+|||||+||++||.
T Consensus       369 ~~~~p~p~~~grvC~~~~~Ce~~c~~~~~~~~~v~i~~l~r~~~d~~~~~~~~~~~~~~~~~~~~V~IIGaGpAGl~aA~  448 (752)
T PRK12778        369 KETSALPAVCGRVCPQEKQCESKCIHGKMGEEAVAIGYLERFVADYERESGNISVPEVAEKNGKKVAVIGSGPAGLSFAG  448 (752)
T ss_pred             HhhCCchhHhcCcCCCcCchHHhcccCCCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCCCCCCEEEEECcCHHHHHHHH
Confidence            4689999999999996  8999999987   35777777776654311       1  1235679999999999999999


Q ss_pred             HHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHHHCCCeEEeCCcEEEEeC
Q 011351           69 TFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDI  148 (488)
Q Consensus        69 ~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~  148 (488)
                      .|++.|+   +|+|+|+++.....   +.  +-.+.    .+++.       .......+++++.+++++.++.+     
T Consensus       449 ~l~~~G~---~V~v~e~~~~~GG~---l~--~gip~----~rlp~-------~~~~~~~~~l~~~gv~~~~~~~v-----  504 (752)
T PRK12778        449 DLAKRGY---DVTVFEALHEIGGV---LK--YGIPE----FRLPK-------KIVDVEIENLKKLGVKFETDVIV-----  504 (752)
T ss_pred             HHHHCCC---eEEEEecCCCCCCe---ee--ecCCC----CCCCH-------HHHHHHHHHHHHCCCEEECCCEE-----
Confidence            9999988   89999986542110   00  10111    11110       00122345677889999987543     


Q ss_pred             CCcEEEeCCCcEEEeccEEeccCCC-CCcCCCCCCCCCCcEEEecCHHHHHHHHH--------hhhcCCeEEEECCCHHH
Q 011351          149 EKQTLITNSGKLLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADADALIS--------SLEKAKKVVVVGGGYIG  219 (488)
Q Consensus       149 ~~~~v~~~~g~~i~yd~lVlAtG~~-~~~~~~~~g~~~~gv~~~~~~~~~~~~~~--------~~~~~~~vvVvG~G~~g  219 (488)
                       .+.+++++.....||+||||||+. ++ .++++|.+.+++++..++.....+..        ....+++|+|||+|.+|
T Consensus       505 -~~~v~~~~l~~~~ydavvlAtGa~~~~-~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a  582 (752)
T PRK12778        505 -GKTITIEELEEEGFKGIFIASGAGLPN-FMNIPGENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTA  582 (752)
T ss_pred             -CCcCCHHHHhhcCCCEEEEeCCCCCCC-CCCCCCCCCCCcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHH
Confidence             234555554456799999999984 55 45678888888887655443322211        12357899999999999


Q ss_pred             HHHHHHHHhCCCc-EEEEecCCc-CcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC--------
Q 011351          220 MEVAAAAVGWKLD-TTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--------  289 (488)
Q Consensus       220 ~e~A~~l~~~g~~-v~lv~~~~~-~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~--------  289 (488)
                      +|+|..+.++|.+ |+++++++. .++.    ... .+ +.+++.||++++++.+.++..++++++.++.+.        
T Consensus       583 ~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~----~~~-e~-~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~  656 (752)
T PRK12778        583 MDSARTAKRLGAERVTIVYRRSEEEMPA----RLE-EV-KHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPD  656 (752)
T ss_pred             HHHHHHHHHcCCCeEEEeeecCcccCCC----CHH-HH-HHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcC
Confidence            9999999999997 999998764 2321    111 12 346788999999999999976556666666542        


Q ss_pred             -CC-----------cEEEcCEEEEeecCccCChhhhhc-CCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCccc
Q 011351          290 -DG-----------STIDADTIVIGIGAKPTVSPFERV-GLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA  355 (488)
Q Consensus       290 -~g-----------~~i~~D~vi~a~G~~p~~~~~~~~-gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~  355 (488)
                       +|           ++++||.||+|+|+.|+..++... ++..+ +|+|.||++++|+.|+|||+|||+..+.       
T Consensus       657 ~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~gVfA~GD~~~g~~-------  729 (752)
T PRK12778        657 ASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSSIPGLELNRKGTIVVDEEMQSSIPGIYAGGDIVRGGA-------  729 (752)
T ss_pred             CCCCCCceecCCCeEEEECCEEEECcCCCCCccccccccCceECCCCCEEeCCCCCCCCCCEEEeCCccCCcH-------
Confidence             22           259999999999999998776553 67665 5789999999999999999999997432       


Q ss_pred             ccccHHHHHHHHHHHHHHHhc
Q 011351          356 RVEHVDHARQSAQHCIKALLS  376 (488)
Q Consensus       356 ~~~~~~~A~~~g~~~a~~i~~  376 (488)
                         .+..|..+|+.+|.+|..
T Consensus       730 ---~vv~Av~~G~~AA~~I~~  747 (752)
T PRK12778        730 ---TVILAMGDGKRAAAAIDE  747 (752)
T ss_pred             ---HHHHHHHHHHHHHHHHHH
Confidence               345688899999988864

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=100.00  E-value=2.6e-36  Score=307.67  Aligned_cols=337  Identities=20%  Similarity=0.212  Sum_probs=233.4

Q ss_pred             cccccccceeeccccCCCCcccceec--ccccccccccccccccc---------ccCCCCCeEEEEcCchHHHHHHHHHH
Q 011351            3 SVSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVAYS---------SFANENREFVIVGGGNAAGYAARTFV   71 (488)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---------~~~~~~~~vvIIGgG~AGl~aA~~L~   71 (488)
                      -.+|||+.+||++|.++|+.+|.|..  .+++++...|+..+...         +.....++|+|||||+||+++|..|+
T Consensus        84 ~~~~p~~~~~g~vC~~~Ce~~C~~~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~~~VvIIGaGpAGl~aA~~l~  163 (471)
T PRK12810         84 HQTNNFPEFTGRVCPAPCEGACTLNINFGPVTIKNIERYIIDKAFEEGWVKPDPPVKRTGKKVAVVGSGPAGLAAADQLA  163 (471)
T ss_pred             HHhCChhHHhcCcCCchhHHhccCCCCCCCccHHHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECcCHHHHHHHHHHH
Confidence            36899999999999999999999997  78888888877764321         11234579999999999999999999


Q ss_pred             HcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCc
Q 011351           72 EHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ  151 (488)
Q Consensus        72 ~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~  151 (488)
                      +.|+   +|+|+|+++.....   +.  +-.+....+..           ......+++.+.+++++.++.+. .+... 
T Consensus       164 ~~G~---~V~vie~~~~~GG~---l~--~gip~~~~~~~-----------~~~~~~~~~~~~gv~~~~~~~v~-~~~~~-  222 (471)
T PRK12810        164 RAGH---KVTVFERADRIGGL---LR--YGIPDFKLEKE-----------VIDRRIELMEAEGIEFRTNVEVG-KDITA-  222 (471)
T ss_pred             hCCC---cEEEEecCCCCCce---ee--ecCCcccCCHH-----------HHHHHHHHHHhCCcEEEeCCEEC-CcCCH-
Confidence            9987   89999998654210   00  00010000000           01223456788899999876542 22111 


Q ss_pred             EEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHH--HHHH------hhhcCCeEEEECCCHHHHHHH
Q 011351          152 TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADAD--ALIS------SLEKAKKVVVVGGGYIGMEVA  223 (488)
Q Consensus       152 ~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~--~~~~------~~~~~~~vvVvG~G~~g~e~A  223 (488)
                           +.....||+||+|||+.....+.++|.+.+++++..++....  .+..      ....+++++|||+|++|+|+|
T Consensus       223 -----~~~~~~~d~vvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A  297 (471)
T PRK12810        223 -----EELLAEYDAVFLGTGAYKPRDLGIPGRDLDGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCV  297 (471)
T ss_pred             -----HHHHhhCCEEEEecCCCCCCcCCCCCccCCCcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHH
Confidence                 111257999999999973334556777778877643222111  1111      123578999999999999999


Q ss_pred             HHHHhCCC-cEEEEecCCcCcccccCH----HH-HHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC-----CC-
Q 011351          224 AAAVGWKL-DTTIIFPENHLLQRLFTP----SL-AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-----DG-  291 (488)
Q Consensus       224 ~~l~~~g~-~v~lv~~~~~~l~~~~~~----~~-~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~-----~g-  291 (488)
                      ..+...|. +|++++..+......++.    .. .....+.+++.||++++++.++++.. +++++.+|.+.     +| 
T Consensus       298 ~~~~~~ga~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~-~~g~v~~V~~~~~~~~~g~  376 (471)
T PRK12810        298 GTAIRQGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFEG-ENGKVTGVKVVRTELGEGD  376 (471)
T ss_pred             HHHHHcCCCeEEEccccCCCccccccccCCcccchHHHHHHHHHcCCeEEeccCceEEEc-cCCEEEEEEEEEEEecCCC
Confidence            98888876 788766554332211010    00 11134557788999999999999974 35666655432     22 


Q ss_pred             --------cEEEcCEEEEeecCccCC-hhhhhcCCccc-CCCEEeC-CCCCCCCCCEEEEceecccCCccCCcccccccH
Q 011351          292 --------STIDADTIVIGIGAKPTV-SPFERVGLNSS-VGGIQVD-GQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHV  360 (488)
Q Consensus       292 --------~~i~~D~vi~a~G~~p~~-~~~~~~gl~~~-~g~i~vd-~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~  360 (488)
                              +++++|.||+++|.+|+. .+++.+++..+ +|.+.+| ++++|+.|+|||+|||+..+.          .+
T Consensus       377 ~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl~~~~~g~i~vd~~~~~Ts~~gVfa~GD~~~g~~----------~~  446 (471)
T PRK12810        377 FEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGVELDERGRVAAPDNAYQTSNPKVFAAGDMRRGQS----------LV  446 (471)
T ss_pred             ccccCCceEEEECCEEEECcCcCCCchhhccccCcccCCCCCEEeCCCcccCCCCCEEEccccCCCch----------hH
Confidence                    479999999999999985 47888888776 5779998 799999999999999997432          34


Q ss_pred             HHHHHHHHHHHHHHhc
Q 011351          361 DHARQSAQHCIKALLS  376 (488)
Q Consensus       361 ~~A~~~g~~~a~~i~~  376 (488)
                      ..|..+|+.+|.+|..
T Consensus       447 ~~Av~~G~~AA~~i~~  462 (471)
T PRK12810        447 VWAIAEGRQAARAIDA  462 (471)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            5688888888888754

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=100.00  E-value=1.9e-35  Score=300.12  Aligned_cols=332  Identities=19%  Similarity=0.201  Sum_probs=236.0

Q ss_pred             cccccccceeecccc--CCCCcccceec--ccccccccccccccccc-----c----cCCCCCeEEEEcCchHHHHHHHH
Q 011351            3 SVSNSLSFKHGLSLW--CPQSPSLHRIR--HSSAKNFQRRGFVVAYS-----S----FANENREFVIVGGGNAAGYAART   69 (488)
Q Consensus         3 ~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-----~----~~~~~~~vvIIGgG~AGl~aA~~   69 (488)
                      -.+|||+.+||++|.  .+|+.+|.|..  .++.++...|+..+...     +    ...+.++|+|||||++|+++|..
T Consensus        80 ~~~np~~~~~grvC~~~~~Ce~~C~~~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~~~V~IIG~GpaGl~aA~~  159 (467)
T TIGR01318        80 HQTNTLPEICGRVCPQDRLCEGACTLNDEFGAVTIGNLERYITDTALAMGWRPDLSHVVPTGKRVAVIGAGPAGLACADI  159 (467)
T ss_pred             HHhCCchHhhcccCCCCCChHHhCcCCCCCCCccHHHHHHHHHHHHHHhCCCCCCCCcCCCCCeEEEECCCHHHHHHHHH
Confidence            468999999999998  59999999997  78888888877765421     1    12345899999999999999999


Q ss_pred             HHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCC
Q 011351           70 FVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE  149 (488)
Q Consensus        70 L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~  149 (488)
                      |++.|+   +|+|+|+.+....        ++.. .....+++       .+......+++++.|++++.++.|..    
T Consensus       160 l~~~G~---~V~i~e~~~~~gG--------~l~~-gip~~~~~-------~~~~~~~~~~~~~~Gv~~~~~~~v~~----  216 (467)
T TIGR01318       160 LARAGV---QVVVFDRHPEIGG--------LLTF-GIPSFKLD-------KAVLSRRREIFTAMGIEFHLNCEVGR----  216 (467)
T ss_pred             HHHcCC---eEEEEecCCCCCc--------eeee-cCccccCC-------HHHHHHHHHHHHHCCCEEECCCEeCC----
Confidence            999987   7999998865321        1100 00000110       00012235677889999998876521    


Q ss_pred             CcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHH--HHHHH---------hhhcCCeEEEECCCHH
Q 011351          150 KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA--DALIS---------SLEKAKKVVVVGGGYI  218 (488)
Q Consensus       150 ~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~--~~~~~---------~~~~~~~vvVvG~G~~  218 (488)
                        .+.+++ ....||.||+|||+.+....+++|.+.+++++..++...  ..+..         ....+++++|+|+|.+
T Consensus       217 --~~~~~~-~~~~~D~vilAtGa~~~~~~~i~g~~~~gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~  293 (467)
T TIGR01318       217 --DISLDD-LLEDYDAVFLGVGTYRSMRGGLPGEDAPGVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDT  293 (467)
T ss_pred             --ccCHHH-HHhcCCEEEEEeCCCCCCcCCCCCcCCCCcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHH
Confidence              122222 124799999999998754456788888888765322111  11100         0124689999999999


Q ss_pred             HHHHHHHHHhCCC-cEEEEecCCcC-cccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC-------
Q 011351          219 GMEVAAAAVGWKL-DTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-------  289 (488)
Q Consensus       219 g~e~A~~l~~~g~-~v~lv~~~~~~-l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~-------  289 (488)
                      |+++|..+.++|. +|+++++++.. ++. .+.    . .+.+++.||++++++.++++..++++++.++.+.       
T Consensus       294 a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~-~~~----e-~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~  367 (467)
T TIGR01318       294 AMDCVRTAIRLGAASVTCAYRRDEANMPG-SRR----E-VANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEP  367 (467)
T ss_pred             HHHHHHHHHHcCCCeEEEEEecCcccCCC-CHH----H-HHHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEeccc
Confidence            9999999999985 79999987653 332 222    2 2346788999999999999975555666555441       


Q ss_pred             --C-----------CcEEEcCEEEEeecCccCC-hhhhhcCCccc-CCCEEeC----CCCCCCCCCEEEEceecccCCcc
Q 011351          290 --D-----------GSTIDADTIVIGIGAKPTV-SPFERVGLNSS-VGGIQVD----GQFRTRMPGIFAIGDVAAFPLKM  350 (488)
Q Consensus       290 --~-----------g~~i~~D~vi~a~G~~p~~-~~~~~~gl~~~-~g~i~vd----~~~~t~~~~Ifa~GD~a~~~~~~  350 (488)
                        +           .+++++|.||+++|++|+. .+++..++..+ +|++.||    .+++|+.|+|||+|||+..+.  
T Consensus       368 ~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~gl~~~~~g~i~vd~~~~~~~~T~~~gVfa~GD~~~~~~--  445 (467)
T TIGR01318       368 DADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLAGHGITLDSWGRIITGDVSYLPYQTTNPKIFAGGDAVRGAD--  445 (467)
T ss_pred             CCCCCccceecCCceEEEECCEEEECCcCCCCccccccccCccCCCCCCEEeCCccccCccCCCCCEEEECCcCCCcc--
Confidence              1           2369999999999999984 56777777765 5779999    688999999999999987432  


Q ss_pred             CCcccccccHHHHHHHHHHHHHHHhc
Q 011351          351 YDRTARVEHVDHARQSAQHCIKALLS  376 (488)
Q Consensus       351 ~~~~~~~~~~~~A~~~g~~~a~~i~~  376 (488)
                              .+..|..+|+.+|.+|..
T Consensus       446 --------~~~~Ai~~G~~aA~~i~~  463 (467)
T TIGR01318       446 --------LVVTAVAEGRQAAQGILD  463 (467)
T ss_pred             --------HHHHHHHHHHHHHHHHHH
Confidence                    345689999999998863

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=100.00  E-value=1.8e-35  Score=311.29  Aligned_cols=332  Identities=23%  Similarity=0.264  Sum_probs=229.2

Q ss_pred             cccccccceeeccccCCCCcccceec--cccccccccccccccc-------cc--cCCCCCeEEEEcCchHHHHHHHHHH
Q 011351            3 SVSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVAY-------SS--FANENREFVIVGGGNAAGYAARTFV   71 (488)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-------~~--~~~~~~~vvIIGgG~AGl~aA~~L~   71 (488)
                      -.+|||+.++|++|.++|+..|.+..  .++.+....|+..+..       .|  .....++|+|||||+||+++|..|+
T Consensus       134 ~~~~p~p~~~grvC~~~Ce~~C~r~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~k~VaIIGaGpAGl~aA~~La  213 (652)
T PRK12814        134 KETIPLPGILGRICPAPCEEACRRHGVDEPVSICALKRYAADRDMESAERYIPERAPKSGKKVAIIGAGPAGLTAAYYLL  213 (652)
T ss_pred             HhhCCccceeeCCcCchhhHHHcCCCCCCCcchhHHHHHHHHHHHhcCcccCCCCCCCCCCEEEEECCCHHHHHHHHHHH
Confidence            46899999999999999999999987  6666777777766421       11  1234579999999999999999999


Q ss_pred             HcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCc
Q 011351           72 EHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ  151 (488)
Q Consensus        72 ~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~  151 (488)
                      +.|+   +|+|+|+++.....   +.  +..+.    .+++.       .......+.+.+.|+++++++.+ .++    
T Consensus       214 ~~G~---~Vtv~e~~~~~GG~---l~--~gip~----~~~~~-------~~~~~~~~~l~~~Gv~i~~~~~v-~~d----  269 (652)
T PRK12814        214 RKGH---DVTIFDANEQAGGM---MR--YGIPR----FRLPE-------SVIDADIAPLRAMGAEFRFNTVF-GRD----  269 (652)
T ss_pred             HCCC---cEEEEecCCCCCce---ee--ecCCC----CCCCH-------HHHHHHHHHHHHcCCEEEeCCcc-cCc----
Confidence            9987   89999998764211   00  00010    01110       00112345667789999887543 222    


Q ss_pred             EEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCC
Q 011351          152 TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKL  231 (488)
Q Consensus       152 ~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~  231 (488)
                       +++++.. ..||+|+||||+.+...+.++|.+.++++...++............+++++|||+|.+|+|+|..+.+.|.
T Consensus       270 -v~~~~~~-~~~DaVilAtGa~~~~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga  347 (652)
T PRK12814        270 -ITLEELQ-KEFDAVLLAVGAQKASKMGIPGEELPGVISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGA  347 (652)
T ss_pred             -cCHHHHH-hhcCEEEEEcCCCCCCCCCCCCcCcCCcEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCC
Confidence             2222222 35999999999986444566777777766432221111111123468999999999999999999999986


Q ss_pred             -cEEEEecCCc-CcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCC-cEEEEEeC---------------CCc-
Q 011351          232 -DTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG-RVAAVKLE---------------DGS-  292 (488)
Q Consensus       232 -~v~lv~~~~~-~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~-~v~~v~l~---------------~g~-  292 (488)
                       +|+++++.+. .++. .+    ..+.+. .+.||++++++.+.++...+++ .+..+.+.               +|+ 
T Consensus       348 ~~Vtlv~r~~~~~mpa-~~----~ei~~a-~~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~  421 (652)
T PRK12814        348 ESVTILYRRTREEMPA-NR----AEIEEA-LAEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSE  421 (652)
T ss_pred             CeEEEeeecCcccCCC-CH----HHHHHH-HHcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCce
Confidence             5999998764 3432 22    233333 3569999999999998753222 12222221               122 


Q ss_pred             -EEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCC-CCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHH
Q 011351          293 -TIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDG-QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH  369 (488)
Q Consensus       293 -~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~-~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~  369 (488)
                       ++++|.||+++|..|+.++++..++..+ +|+|.||+ +++|+.|+|||+|||+..+.          .+..|..+|+.
T Consensus       422 ~~i~~D~VI~AiG~~p~~~ll~~~gl~~~~~G~I~vd~~~~~Ts~pgVfA~GDv~~g~~----------~v~~Ai~~G~~  491 (652)
T PRK12814        422 FTLQADTVISAIGQQVDPPIAEAAGIGTSRNGTVKVDPETLQTSVAGVFAGGDCVTGAD----------IAINAVEQGKR  491 (652)
T ss_pred             EEEECCEEEECCCCcCCcccccccCccccCCCcEeeCCCCCcCCCCCEEEcCCcCCCch----------HHHHHHHHHHH
Confidence             5999999999999999999888888876 57899997 68999999999999986532          45568888888


Q ss_pred             HHHHHhc
Q 011351          370 CIKALLS  376 (488)
Q Consensus       370 ~a~~i~~  376 (488)
                      +|.+|..
T Consensus       492 AA~~I~~  498 (652)
T PRK12814        492 AAHAIDL  498 (652)
T ss_pred             HHHHHHH
Confidence            8888743

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=100.00  E-value=2.4e-35  Score=320.96  Aligned_cols=332  Identities=17%  Similarity=0.194  Sum_probs=233.8

Q ss_pred             cccccccceeeccccC--CCCcccceec--ccccccccccccccccc------cc-CCCCCeEEEEcCchHHHHHHHHHH
Q 011351            3 SVSNSLSFKHGLSLWC--PQSPSLHRIR--HSSAKNFQRRGFVVAYS------SF-ANENREFVIVGGGNAAGYAARTFV   71 (488)
Q Consensus         3 ~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~------~~-~~~~~~vvIIGgG~AGl~aA~~L~   71 (488)
                      ..+|||+.+||++|++  +|+.+|.+..  .++.++...|+..+...      |. ..+.++|+|||||||||+||..|+
T Consensus       371 ~~~np~p~~~grvCp~~~~Ce~~C~~~~~~~pv~I~~ler~~~d~~~~~~~~~~~~~~~~~kVaIIG~GPAGLsaA~~La  450 (1006)
T PRK12775        371 YEASIFPSICGRVCPQETQCEAQCIIAKKHESVGIGRLERFVGDNARAKPVKPPRFSKKLGKVAICGSGPAGLAAAADLV  450 (1006)
T ss_pred             HHhCChHHHhcCcCCCCCCHHHhCcCCCCCCCeeecHHHHHHHHHHHHcCCCCCCCCCCCCEEEEECCCHHHHHHHHHHH
Confidence            4689999999999998  8999999998  78888888888765421      11 234689999999999999999999


Q ss_pred             HcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCc
Q 011351           72 EHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ  151 (488)
Q Consensus        72 ~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~  151 (488)
                      +.|+   +|+|+|+.+.....   +.  +-.+..    +++       .+......+++++.|++++.++.+ +     +
T Consensus       451 ~~G~---~VtV~E~~~~~GG~---l~--~gip~~----rl~-------~e~~~~~~~~l~~~Gv~~~~~~~v-g-----~  505 (1006)
T PRK12775        451 KYGV---DVTVYEALHVVGGV---LQ--YGIPSF----RLP-------RDIIDREVQRLVDIGVKIETNKVI-G-----K  505 (1006)
T ss_pred             HcCC---cEEEEecCCCCcce---ee--ccCCcc----CCC-------HHHHHHHHHHHHHCCCEEEeCCcc-C-----C
Confidence            9988   89999987653210   00  001111    111       001123456778899999987533 1     2


Q ss_pred             EEEeCCCc-EEEeccEEeccCCC-CCcCCCCCCCCCCcEEEecCHHHHHHHHH---------hhhcCCeEEEECCCHHHH
Q 011351          152 TLITNSGK-LLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADADALIS---------SLEKAKKVVVVGGGYIGM  220 (488)
Q Consensus       152 ~v~~~~g~-~i~yd~lVlAtG~~-~~~~~~~~g~~~~gv~~~~~~~~~~~~~~---------~~~~~~~vvVvG~G~~g~  220 (488)
                      .+++++-. ...||+||||||+. ++ .++++|.+.+++++..++.....+..         ....+++|+|||+|.+|+
T Consensus       506 ~~~~~~l~~~~~yDaViIATGa~~pr-~l~IpG~~l~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~  584 (1006)
T PRK12775        506 TFTVPQLMNDKGFDAVFLGVGAGAPT-FLGIPGEFAGQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAM  584 (1006)
T ss_pred             ccCHHHHhhccCCCEEEEecCCCCCC-CCCCCCcCCCCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHH
Confidence            22222211 24699999999995 54 46678888888877654443332211         123579999999999999


Q ss_pred             HHHHHHHhCCCc-EEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC----------
Q 011351          221 EVAAAAVGWKLD-TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE----------  289 (488)
Q Consensus       221 e~A~~l~~~g~~-v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~----------  289 (488)
                      ++|..+.++|.+ |+++.+....-   ++.. ... .+.+++.||++++++.++++..++++++.++.+.          
T Consensus       585 D~A~~a~rlGa~~Vtiv~rr~~~e---m~a~-~~e-~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~  659 (1006)
T PRK12775        585 DCLRVAKRLGAPTVRCVYRRSEAE---APAR-IEE-IRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEK  659 (1006)
T ss_pred             HHHHHHHHcCCCEEEEEeecCccc---CCCC-HHH-HHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCC
Confidence            999999999875 78887654221   1111 111 2356788999999999999976556777666442          


Q ss_pred             -------CC--cEEEcCEEEEeecCccCChhhhh-cCCccc-CCCEEeCC-----CCCCCCCCEEEEceecccCCccCCc
Q 011351          290 -------DG--STIDADTIVIGIGAKPTVSPFER-VGLNSS-VGGIQVDG-----QFRTRMPGIFAIGDVAAFPLKMYDR  353 (488)
Q Consensus       290 -------~g--~~i~~D~vi~a~G~~p~~~~~~~-~gl~~~-~g~i~vd~-----~~~t~~~~Ifa~GD~a~~~~~~~~~  353 (488)
                             +|  .++++|.||+++|+.|+..++.. .++..+ +|.|.+|+     +++|++|+|||+|||+..+.     
T Consensus       660 Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~l~~~G~I~vd~~~v~~~~~Ts~pgVFAaGDv~~G~~-----  734 (1006)
T PRK12775        660 GRRKPMPTGEFKDLECDTVIYALGTKANPIITQSTPGLALNKWGNIAADDGKLESTQSTNLPGVFAGGDIVTGGA-----  734 (1006)
T ss_pred             CCccccCCCceEEEEcCEEEECCCcCCChhhhhccCCcccCCCCcEEeCCCccccCcCCCCCCEEEecCcCCCcc-----
Confidence                   12  25999999999999999876654 366654 57799996     78999999999999996432     


Q ss_pred             ccccccHHHHHHHHHHHHHHHh
Q 011351          354 TARVEHVDHARQSAQHCIKALL  375 (488)
Q Consensus       354 ~~~~~~~~~A~~~g~~~a~~i~  375 (488)
                           .+..|..+|+.+|.+|.
T Consensus       735 -----~vv~Ai~~Gr~AA~~I~  751 (1006)
T PRK12775        735 -----TVILAMGAGRRAARSIA  751 (1006)
T ss_pred             -----HHHHHHHHHHHHHHHHH
Confidence                 34457777777777764

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=100.00  E-value=4.5e-34  Score=276.27  Aligned_cols=285  Identities=23%  Similarity=0.319  Sum_probs=205.9

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCccc-ccCCCCCCCCHhHH
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTPEWY  130 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  130 (488)
                      +||+|||||+||++||..|++.|.   +|+|||+++... .       +...  .....++++.. ..+.+......+++
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~gg-~-------~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~   67 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANL---KTLIIEGMEPGG-Q-------LTTT--TEVENYPGFPEGISGPELMEKMKEQA   67 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCC---CEEEEeccCCCc-c-------eeec--ccccccCCCCCCCChHHHHHHHHHHH
Confidence            589999999999999999999987   799999876210 0       0000  00011111110 01111123445667


Q ss_pred             HHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCC---CcEEEecCHHHHHHHHHhhh
Q 011351          131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL---PGVHYIRDVADADALISSLE  205 (488)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~---~gv~~~~~~~~~~~~~~~~~  205 (488)
                      ++.+++++. ++|+++++.++  .+++.+++++.||+||+|||+.+. .+.+++...   .++++.....      ....
T Consensus        68 ~~~gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~-~~~i~g~~~~~~~~~~~~~~~~------~~~~  139 (300)
T TIGR01292        68 VKFGAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASAR-KLGIPGEDEFLGRGVSYCATCD------GPFF  139 (300)
T ss_pred             HHcCCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcc-cCCCCChhhcCCccEEEeeecC------hhhc
Confidence            788999998 79999998764  566777788999999999999876 344555321   2333222111      1234


Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHc-CcEEEcCCeEEEEEeCCCCcEE
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVA  284 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~~~v~  284 (488)
                      .+++++|+|+|.+|+|+|..|.+.+.+|+++.+.+.+..   .    ..+.+.+++. ||++++++++++++.+  +++.
T Consensus       140 ~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~---~----~~~~~~l~~~~gv~~~~~~~v~~i~~~--~~~~  210 (300)
T TIGR01292       140 KNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRA---E----KILLDRLRKNPNIEFLWNSTVKEIVGD--NKVE  210 (300)
T ss_pred             CCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCc---C----HHHHHHHHhCCCeEEEeccEEEEEEcc--CcEE
Confidence            678999999999999999999999999999999876532   2    3455667777 9999999999999843  3444


Q ss_pred             EEEeC-----CCcEEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccc
Q 011351          285 AVKLE-----DGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVE  358 (488)
Q Consensus       285 ~v~l~-----~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~  358 (488)
                      .+.+.     +++++++|.+++|+|++|+.++++.+ +..+ +|++.||++++|++||||++|||+...         ..
T Consensus       211 ~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~l~~~-~~~~~~g~i~v~~~~~t~~~~vya~GD~~~~~---------~~  280 (300)
T TIGR01292       211 GVKIKNTVTGEEEELKVDGVFIAIGHEPNTELLKGL-LELDEGGYIVTDEGMRTSVPGVFAAGDVRDKG---------YR  280 (300)
T ss_pred             EEEEEecCCCceEEEEccEEEEeeCCCCChHHHHHh-heecCCCcEEECCCCccCCCCEEEeecccCcc---------hh
Confidence            45442     23579999999999999998888877 5544 578999999999999999999999842         12


Q ss_pred             cHHHHHHHHHHHHHHHhc
Q 011351          359 HVDHARQSAQHCIKALLS  376 (488)
Q Consensus       359 ~~~~A~~~g~~~a~~i~~  376 (488)
                      .+..|..+|+.+|.+|..
T Consensus       281 ~~~~A~~~g~~aa~~i~~  298 (300)
T TIGR01292       281 QAVTAAGDGCIAALSAER  298 (300)
T ss_pred             hhhhhhhhHHHHHHHHHh
Confidence            566799999999998863

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=100.00  E-value=1.9e-34  Score=305.02  Aligned_cols=332  Identities=19%  Similarity=0.220  Sum_probs=234.0

Q ss_pred             cccccccceeecccc--CCCCcccceec--ccccccccccccccccc-----c----cCCCCCeEEEEcCchHHHHHHHH
Q 011351            3 SVSNSLSFKHGLSLW--CPQSPSLHRIR--HSSAKNFQRRGFVVAYS-----S----FANENREFVIVGGGNAAGYAART   69 (488)
Q Consensus         3 ~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-----~----~~~~~~~vvIIGgG~AGl~aA~~   69 (488)
                      ..+|||+.++|++|.  .+|+.+|.+..  .++.++...|+..+...     |    ...+.++|+|||||+|||+||..
T Consensus       266 ~~~np~p~~~grvCp~~~~Ce~~C~~~~~~~~v~I~~l~r~~~d~~~~~~~~~~~~~~~~~~~~VaIIGaGpAGLsaA~~  345 (654)
T PRK12769        266 HQTNSLPEITGRVCPQDRLCEGACTLRDEYGAVTIGNIERYISDQALAKGWRPDLSQVTKSDKRVAIIGAGPAGLACADV  345 (654)
T ss_pred             HHhCCchhHhcccCCCCCChHHhccCCCCCCCeecCHHHHHHHHHHHHhCCCCCCcccccCCCEEEEECCCHHHHHHHHH
Confidence            468999999999998  58999999987  78888888887765421     1    12346899999999999999999


Q ss_pred             HHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCC
Q 011351           70 FVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE  149 (488)
Q Consensus        70 L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~  149 (488)
                      |++.|+   +|+|+|+.+.....   +.  +-.+.    .+++       .....+..+++++.|++++.++.|.     
T Consensus       346 L~~~G~---~V~V~E~~~~~GG~---l~--~gip~----~~l~-------~~~~~~~~~~~~~~Gv~~~~~~~v~-----  401 (654)
T PRK12769        346 LARNGV---AVTVYDRHPEIGGL---LT--FGIPA----FKLD-------KSLLARRREIFSAMGIEFELNCEVG-----  401 (654)
T ss_pred             HHHCCC---eEEEEecCCCCCce---ee--ecCCC----ccCC-------HHHHHHHHHHHHHCCeEEECCCEeC-----
Confidence            999987   79999987653210   00  00010    0110       0001223466778899999876552     


Q ss_pred             CcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHH--HHHHHHH---------hhhcCCeEEEECCCHH
Q 011351          150 KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVA--DADALIS---------SLEKAKKVVVVGGGYI  218 (488)
Q Consensus       150 ~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~--~~~~~~~---------~~~~~~~vvVvG~G~~  218 (488)
                       ..+.+++. ...||+|++|||+.......+++.+.+|++....+.  .......         ....+++++|||+|.+
T Consensus       402 -~~i~~~~~-~~~~DavilAtGa~~~~~l~i~g~~~~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~  479 (654)
T PRK12769        402 -KDISLESL-LEDYDAVFVGVGTYRSMKAGLPNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDT  479 (654)
T ss_pred             -CcCCHHHH-HhcCCEEEEeCCCCCCCCCCCCCCCCCCeEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHH
Confidence             11111111 136999999999875434556777778876532111  0111110         0124689999999999


Q ss_pred             HHHHHHHHHhCCC-cEEEEecCCcC-cccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC-------
Q 011351          219 GMEVAAAAVGWKL-DTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-------  289 (488)
Q Consensus       219 g~e~A~~l~~~g~-~v~lv~~~~~~-l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~-------  289 (488)
                      |+|+|..+.++|. +|+++++.+.. ++.  .+    ...+.+++.||++++++.++++..++++++.+|.+.       
T Consensus       480 a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~--~~----~e~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~  553 (654)
T PRK12769        480 AMDCVRTALRHGASNVTCAYRRDEANMPG--SK----KEVKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEP  553 (654)
T ss_pred             HHHHHHHHHHcCCCeEEEeEecCCCCCCC--CH----HHHHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCc
Confidence            9999999888886 69999887653 331  12    223457888999999999999975556777666541       


Q ss_pred             --CC-----------cEEEcCEEEEeecCccCC-hhhhhcCCccc-CCCEEeCC----CCCCCCCCEEEEceecccCCcc
Q 011351          290 --DG-----------STIDADTIVIGIGAKPTV-SPFERVGLNSS-VGGIQVDG----QFRTRMPGIFAIGDVAAFPLKM  350 (488)
Q Consensus       290 --~g-----------~~i~~D~vi~a~G~~p~~-~~~~~~gl~~~-~g~i~vd~----~~~t~~~~Ifa~GD~a~~~~~~  350 (488)
                        +|           .++++|.||+|+|+.|+. .+++..+++.+ +|.|.||+    +++|+.|+|||+||++..+.  
T Consensus       554 ~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfAaGD~~~g~~--  631 (654)
T PRK12769        554 DAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAVRGAD--  631 (654)
T ss_pred             CCCCCCcceeCCCceEEEECCEEEECccCCCCccccccccCCcCCCCCCEEeCCCcccCcccCCCCEEEcCCcCCCCc--
Confidence              22           259999999999999985 56788888876 57799986    48999999999999987543  


Q ss_pred             CCcccccccHHHHHHHHHHHHHHHhc
Q 011351          351 YDRTARVEHVDHARQSAQHCIKALLS  376 (488)
Q Consensus       351 ~~~~~~~~~~~~A~~~g~~~a~~i~~  376 (488)
                              .+..|+.+|+.+|++|..
T Consensus       632 --------~vv~Ai~~Gr~AA~~I~~  649 (654)
T PRK12769        632 --------LVVTAMAEGRHAAQGIID  649 (654)
T ss_pred             --------HHHHHHHHHHHHHHHHHH
Confidence                    455689999999998864

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=100.00  E-value=3.8e-34  Score=294.69  Aligned_cols=269  Identities=26%  Similarity=0.372  Sum_probs=196.2

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC-CCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCH
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA-PYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP  127 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (488)
                      ...+||+|||||+||++||.+|++.|.   +++||++.... ......+.            ++.+.....+........
T Consensus       210 ~~~~dVvIIGgGpAGl~AA~~la~~G~---~v~li~~~~GG~~~~~~~~~------------~~~~~~~~~~~~l~~~l~  274 (515)
T TIGR03140       210 LDPYDVLVVGGGPAGAAAAIYAARKGL---RTAMVAERIGGQVKDTVGIE------------NLISVPYTTGSQLAANLE  274 (515)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCCCccccCcCcc------------cccccCCCCHHHHHHHHH
Confidence            446899999999999999999999987   89999753211 01101110            111111111111123345


Q ss_pred             hHHHHCCCeEEeCCcEEEEeCCC--cEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCC---CCcEEEecCHHHHHHHHH
Q 011351          128 EWYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALIS  202 (488)
Q Consensus       128 ~~~~~~~i~~~~~~~v~~id~~~--~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~---~~gv~~~~~~~~~~~~~~  202 (488)
                      +++++++++++.+++|++++.+.  ..+++.+|+.+.||+||+|||+.++. +.++|..   ..++.+....      ..
T Consensus       275 ~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~-~~ipG~~~~~~~~v~~~~~~------~~  347 (515)
T TIGR03140       275 EHIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRK-LGVPGEKEYIGKGVAYCPHC------DG  347 (515)
T ss_pred             HHHHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcCC-CCCCCHHHcCCCeEEEeecc------Ch
Confidence            66677899999988999998765  46677788889999999999998763 4455531   2234333211      11


Q ss_pred             hhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHH-cCcEEEcCCeEEEEEeCCCC
Q 011351          203 SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDG  281 (488)
Q Consensus       203 ~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~~  281 (488)
                      ....+++++|||+|++|+|+|..|+..+.+|+++++.+.+..       ...+.+.+++ .||++++++.++++..+ ++
T Consensus       348 ~~~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~-------~~~l~~~l~~~~gV~i~~~~~v~~i~~~-~~  419 (515)
T TIGR03140       348 PFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA-------DKVLQDKLKSLPNVDILTSAQTTEIVGD-GD  419 (515)
T ss_pred             hhcCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCCh-------hHHHHHHHhcCCCCEEEECCeeEEEEcC-CC
Confidence            234689999999999999999999999999999998876643       2345666666 59999999999999743 45


Q ss_pred             cEEEEEeCC---C--cEEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCC
Q 011351          282 RVAAVKLED---G--STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPL  348 (488)
Q Consensus       282 ~v~~v~l~~---g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~  348 (488)
                      ++..+.+.+   |  +++++|.|++++|.+|++++++.. +..+ +|+|.||+++||++|||||+|||+..+.
T Consensus       420 ~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~l~~~-~~~~~~G~I~vd~~~~Ts~p~IyAaGDv~~~~~  491 (515)
T TIGR03140       420 KVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWLKDA-VELNRRGEIVIDERGRTSVPGIFAAGDVTTVPY  491 (515)
T ss_pred             EEEEEEEEECCCCcEEEEEcCEEEEEeCCcCCchHHhhh-cccCCCCeEEECCCCCCCCCCEEEcccccCCcc
Confidence            665676643   2  469999999999999999998776 6654 5789999999999999999999998654

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=100.00  E-value=4.1e-34  Score=291.48  Aligned_cols=337  Identities=19%  Similarity=0.238  Sum_probs=228.3

Q ss_pred             cccccccceeeccccCCCCcccceec--cccccccccccccccc------c---ccCCCCCeEEEEcCchHHHHHHHHHH
Q 011351            3 SVSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVAY------S---SFANENREFVIVGGGNAAGYAARTFV   71 (488)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~------~---~~~~~~~~vvIIGgG~AGl~aA~~L~   71 (488)
                      -++|||+.++|++|.++|+.+|++..  .++.++...|+..+..      .   +.....++|+|||||+||+++|..|+
T Consensus        84 ~~~~p~p~~~grvC~~~Ce~~C~~~~~~~~v~I~~l~r~~~~~~~~~~~~~~~~~~~~~~~~V~IIGaG~aGl~aA~~L~  163 (485)
T TIGR01317        84 HATNNFPEFTGRVCPAPCEGACTLGISEDPVGIKSIERIIIDKGFQEGWVQPRPPSKRTGKKVAVVGSGPAGLAAADQLN  163 (485)
T ss_pred             HhhCCchhHHhCcCChhhHHhccCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECCcHHHHHHHHHHH
Confidence            36899999999999999999999997  6777777766664321      1   11234479999999999999999999


Q ss_pred             HcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCc
Q 011351           72 EHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ  151 (488)
Q Consensus        72 ~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~  151 (488)
                      +.|+   +|+|+|+++.....   +.  +-.+.......+           .....+++++.|++++.++.+. .+... 
T Consensus       164 ~~g~---~V~v~e~~~~~gG~---l~--~gip~~~~~~~~-----------~~~~~~~~~~~Gv~~~~~~~v~-~~~~~-  222 (485)
T TIGR01317       164 RAGH---TVTVFEREDRCGGL---LM--YGIPNMKLDKAI-----------VDRRIDLLSAEGIDFVTNTEIG-VDISA-  222 (485)
T ss_pred             HcCC---eEEEEecCCCCCce---ee--ccCCCccCCHHH-----------HHHHHHHHHhCCCEEECCCEeC-CccCH-
Confidence            9987   89999998753210   00  000000000000           1223467788999999886653 22111 


Q ss_pred             EEEeCCCcEEEeccEEeccCCC-CCcCCCCCCCCCCcEEEecCHH-HHHHHH---------HhhhcCCeEEEECCCHHHH
Q 011351          152 TLITNSGKLLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVA-DADALI---------SSLEKAKKVVVVGGGYIGM  220 (488)
Q Consensus       152 ~v~~~~g~~i~yd~lVlAtG~~-~~~~~~~~g~~~~gv~~~~~~~-~~~~~~---------~~~~~~~~vvVvG~G~~g~  220 (488)
                           +.....||+|++|||+. +. .++++|.+.+++++...+. +.....         .....+++|+|||+|++|+
T Consensus       223 -----~~~~~~~d~VilAtGa~~~~-~l~i~G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~  296 (485)
T TIGR01317       223 -----DELKEQFDAVVLAGGATKPR-DLPIPGRELKGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGA  296 (485)
T ss_pred             -----HHHHhhCCEEEEccCCCCCC-cCCCCCcCCCCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHH
Confidence                 11235799999999998 54 4567887788888653222 111110         1113579999999999999


Q ss_pred             HHHHHHHhCC-CcEEEEecCCcCcccccC----H------HHHHHHHHHHHHcCcEE-EcCCeEEEEEeCCCCcEEEEEe
Q 011351          221 EVAAAAVGWK-LDTTIIFPENHLLQRLFT----P------SLAQRYEQLYQQNGVKF-VKGASIKNLEAGSDGRVAAVKL  288 (488)
Q Consensus       221 e~A~~l~~~g-~~v~lv~~~~~~l~~~~~----~------~~~~~~~~~l~~~GV~v-~~~~~v~~i~~~~~~~v~~v~l  288 (488)
                      |+|..+.+++ .+|+++++.+.++.....    +      +.....++..+..||.+ ++++.+.++..++++++.++.+
T Consensus       297 d~a~~a~~~ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~v~~  376 (485)
T TIGR01317       297 DCVGTSLRHGAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDEGKVTALRT  376 (485)
T ss_pred             HHHHHHHHcCCCEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceEEecCcEEEEEcCCCeEEEEEE
Confidence            9988877776 479999888765532111    0      11222333334457654 5677788887544466666553


Q ss_pred             --------CCC-----------cEEEcCEEEEeecCc-cCChhhhhcCCccc-CCCEE-eCCCCCCCCCCEEEEceeccc
Q 011351          289 --------EDG-----------STIDADTIVIGIGAK-PTVSPFERVGLNSS-VGGIQ-VDGQFRTRMPGIFAIGDVAAF  346 (488)
Q Consensus       289 --------~~g-----------~~i~~D~vi~a~G~~-p~~~~~~~~gl~~~-~g~i~-vd~~~~t~~~~Ifa~GD~a~~  346 (488)
                              ++|           +++++|.||+++|.. |++.+++..+++.+ +|.+. +|++++|+.|+|||+|||+..
T Consensus       377 ~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~~~~~~gl~~~~~G~i~~~~~~~~Ts~~gVfAaGD~~~g  456 (485)
T TIGR01317       377 VRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILLDDFGVKKTRRGNISAGYDDYSTSIPGVFAAGDCRRG  456 (485)
T ss_pred             EEEEeccCCCCCccceecCCceEEEECCEEEEccCcCCCccccccccCcccCCCCCEEecCCCceECCCCEEEeeccCCC
Confidence                    133           269999999999996 88888888888755 56774 457899999999999999864


Q ss_pred             CCccCCcccccccHHHHHHHHHHHHHHHhc
Q 011351          347 PLKMYDRTARVEHVDHARQSAQHCIKALLS  376 (488)
Q Consensus       347 ~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~  376 (488)
                      +.          ....|..+|+.+|.+|..
T Consensus       457 ~~----------~~~~Av~~G~~AA~~i~~  476 (485)
T TIGR01317       457 QS----------LIVWAINEGRKAAAAVDR  476 (485)
T ss_pred             cH----------HHHHHHHHHHHHHHHHHH
Confidence            32          344578888888888753

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK10262 thioredoxin reductase; Provisional

Probab=100.00  E-value=6.5e-34  Score=277.14  Aligned_cols=274  Identities=20%  Similarity=0.280  Sum_probs=192.9

Q ss_pred             CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCccc-ccCCCCCCCC
Q 011351           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQT  126 (488)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  126 (488)
                      +...+||+|||||||||+||..|+++|+   ++++||.....+..  ....        ...++++... ..+.....+.
T Consensus         3 ~~~~~~vvIIGgGpaGl~aA~~l~~~g~---~~~~ie~~~~gg~~--~~~~--------~~~~~~~~~~~~~~~~~~~~~   69 (321)
T PRK10262          3 TTKHSKLLILGSGPAGYTAAVYAARANL---QPVLITGMEKGGQL--TTTT--------EVENWPGDPNDLTGPLLMERM   69 (321)
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHCCC---CeEEEEeecCCCce--ecCc--------eECCCCCCCCCCCHHHHHHHH
Confidence            3457899999999999999999999987   79999854321110  0000        0011111100 0000111223


Q ss_pred             HhHHHHCCCeEEeCCcEEEEeCCCcEEEeC-CCcEEEeccEEeccCCCCCcCCCCCCCC---CCcEEEecCHHHHHHHHH
Q 011351          127 PEWYKEKGIEMIYQDPVTSIDIEKQTLITN-SGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALIS  202 (488)
Q Consensus       127 ~~~~~~~~i~~~~~~~v~~id~~~~~v~~~-~g~~i~yd~lVlAtG~~~~~~~~~~g~~---~~gv~~~~~~~~~~~~~~  202 (488)
                      .+....++++++.+ +|..++...+.+++. +...+.||+||||||+.++ .|++++.+   ..+++....      +..
T Consensus        70 ~~~~~~~~~~~~~~-~v~~v~~~~~~~~v~~~~~~~~~d~vilAtG~~~~-~~~i~g~~~~~~~~v~~~~~------~~~  141 (321)
T PRK10262         70 HEHATKFETEIIFD-HINKVDLQNRPFRLTGDSGEYTCDALIIATGASAR-YLGLPSEEAFKGRGVSACAT------CDG  141 (321)
T ss_pred             HHHHHHCCCEEEee-EEEEEEecCCeEEEEecCCEEEECEEEECCCCCCC-CCCCCCHHHcCCCcEEEeec------CCH
Confidence            44555677777764 677888766654332 2336899999999999986 45555532   223333321      112


Q ss_pred             hhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCc
Q 011351          203 SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR  282 (488)
Q Consensus       203 ~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~  282 (488)
                      ....+++++|||+|.+|+|+|..|++.+.+|+++++.+.+.   .++.+.+.+.+.+++.||++++++.+++++.+ ++.
T Consensus       142 ~~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~---~~~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~-~~~  217 (321)
T PRK10262        142 FFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR---AEKILIKRLMDKVENGNIILHTNRTLEEVTGD-QMG  217 (321)
T ss_pred             HHcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC---CCHHHHHHHHhhccCCCeEEEeCCEEEEEEcC-Ccc
Confidence            23468999999999999999999999999999999987653   24667788888899999999999999999853 334


Q ss_pred             EEEEEeCCC------cEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeCC-----CCCCCCCCEEEEceecccC
Q 011351          283 VAAVKLEDG------STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDG-----QFRTRMPGIFAIGDVAAFP  347 (488)
Q Consensus       283 v~~v~l~~g------~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~-----~~~t~~~~Ifa~GD~a~~~  347 (488)
                      +..+++.++      +++++|.|++++|.+|+..+++. ++..++|+|.||+     +++|++|||||+|||+..+
T Consensus       218 ~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~~~-~l~~~~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~~  292 (321)
T PRK10262        218 VTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEG-QLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHI  292 (321)
T ss_pred             EEEEEEEEcCCCCeEEEEECCEEEEEeCCccChhHhhc-cccccCCEEEECCCCcccccccCCCCEEECeeccCCC
Confidence            555665432      37999999999999999887654 5666678899997     7899999999999999754

>PRK13984 putative oxidoreductase; Provisional

Probab=100.00  E-value=1.7e-33  Score=296.16  Aligned_cols=327  Identities=20%  Similarity=0.216  Sum_probs=222.7

Q ss_pred             ccccccceeeccccCCCCcccceec--cccccccccccccccc----------cccCCCCCeEEEEcCchHHHHHHHHHH
Q 011351            4 VSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVAY----------SSFANENREFVIVGGGNAAGYAARTFV   71 (488)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~----------~~~~~~~~~vvIIGgG~AGl~aA~~L~   71 (488)
                      .+|||+.+||++|+++|+.+|.+..  .++.++...|+..+..          .+...+.++|+|||+|+||+++|..|+
T Consensus       224 ~~np~~~~~g~vC~~~Ce~~C~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IIGaG~aGl~aA~~L~  303 (604)
T PRK13984        224 KTNPLSMVCGRVCTHKCETVCSIGHRGEPIAIRWLKRYIVDNVPVEKYSEILDDEPEKKNKKVAIVGSGPAGLSAAYFLA  303 (604)
T ss_pred             hcCCccchhhCcCCchHHHhhcccCCCCCeEeCcHHHHHHhHHHHcCcccccCCCcccCCCeEEEECCCHHHHHHHHHHH
Confidence            4799999999999999999999986  6666666555444321          111345689999999999999999999


Q ss_pred             HcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCc
Q 011351           72 EHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ  151 (488)
Q Consensus        72 ~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~  151 (488)
                      +.|+   +|+|+|+++.....   +.  +..+....+..+           ..+..+++++.+++++.++.|.. +    
T Consensus       304 ~~G~---~v~vie~~~~~gG~---~~--~~i~~~~~~~~~-----------~~~~~~~~~~~gv~~~~~~~v~~-~----  359 (604)
T PRK13984        304 TMGY---EVTVYESLSKPGGV---MR--YGIPSYRLPDEA-----------LDKDIAFIEALGVKIHLNTRVGK-D----  359 (604)
T ss_pred             HCCC---eEEEEecCCCCCce---Ee--ecCCcccCCHHH-----------HHHHHHHHHHCCcEEECCCEeCC-c----
Confidence            9987   89999988754211   00  101111111000           12234677888999998866531 1    


Q ss_pred             EEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhh-------hcCCeEEEECCCHHHHHHHH
Q 011351          152 TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL-------EKAKKVVVVGGGYIGMEVAA  224 (488)
Q Consensus       152 ~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~-------~~~~~vvVvG~G~~g~e~A~  224 (488)
                       +..++ ....||+||+|||+.....++++|.+.++++...  .....+...+       ..+++++|||||.+|+|+|.
T Consensus       360 -~~~~~-~~~~yD~vilAtGa~~~r~l~i~G~~~~gv~~a~--~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~  435 (604)
T PRK13984        360 -IPLEE-LREKHDAVFLSTGFTLGRSTRIPGTDHPDVIQAL--PLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIAR  435 (604)
T ss_pred             -CCHHH-HHhcCCEEEEEcCcCCCccCCCCCcCCcCeEeHH--HHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHH
Confidence             11111 1257999999999875334566777667766432  2222222211       23689999999999999999


Q ss_pred             HHHhCCC------cEEEEecC--CcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC-------
Q 011351          225 AAVGWKL------DTTIIFPE--NHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-------  289 (488)
Q Consensus       225 ~l~~~g~------~v~lv~~~--~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~-------  289 (488)
                      .+.+++.      +|+++...  ...++    ... ..+.+ +.+.||+++++..++++.. +++++..+.+.       
T Consensus       436 ~l~r~~~~~~g~~~V~v~~~~r~~~~~~----~~~-~e~~~-~~~~GV~i~~~~~~~~i~~-~~g~v~~v~~~~~~~~~~  508 (604)
T PRK13984        436 SMARLQKMEYGEVNVKVTSLERTFEEMP----ADM-EEIEE-GLEEGVVIYPGWGPMEVVI-ENDKVKGVKFKKCVEVFD  508 (604)
T ss_pred             HHHhccccccCceEEEEeccccCcccCC----CCH-HHHHH-HHHcCCEEEeCCCCEEEEc-cCCEEEEEEEEEEeeccC
Confidence            9988753      67776432  22222    121 12333 3467999999999988864 35666555432       


Q ss_pred             -C-----------CcEEEcCEEEEeecCccCChhhhh---cCCcccCCCEEeCCCCCCCCCCEEEEceecccCCccCCcc
Q 011351          290 -D-----------GSTIDADTIVIGIGAKPTVSPFER---VGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRT  354 (488)
Q Consensus       290 -~-----------g~~i~~D~vi~a~G~~p~~~~~~~---~gl~~~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~  354 (488)
                       +           ++++++|.||+++|++|+++++..   .++..++|+|.||++++|++|+|||+|||+..+.      
T Consensus       509 ~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~~~G~i~vd~~~~Ts~~gVfAaGD~~~~~~------  582 (604)
T PRK13984        509 EEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEFVRGRILTNEYGQTSIPWLFAGGDIVHGPD------  582 (604)
T ss_pred             CCCCccceecCCceEEEECCEEEEeeCCCCChhhhhhhhccCccccCCeEEeCCCCccCCCCEEEecCcCCchH------
Confidence             1           236999999999999999887753   2355566889999999999999999999997542      


Q ss_pred             cccccHHHHHHHHHHHHHHHhc
Q 011351          355 ARVEHVDHARQSAQHCIKALLS  376 (488)
Q Consensus       355 ~~~~~~~~A~~~g~~~a~~i~~  376 (488)
                           ...|..+|+.+|.+|..
T Consensus       583 -----~v~Ai~~G~~AA~~I~~  599 (604)
T PRK13984        583 -----IIHGVADGYWAAEGIDM  599 (604)
T ss_pred             -----HHHHHHHHHHHHHHHHH
Confidence                 23478888888888753

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=100.00  E-value=1.2e-31  Score=271.41  Aligned_cols=323  Identities=28%  Similarity=0.355  Sum_probs=263.8

Q ss_pred             EEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHHHC
Q 011351           54 FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEK  133 (488)
Q Consensus        54 vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (488)
                      ++|||+|++|+++|..|++... +.+++++..++...|.+++++..+...... ...+.           .... +..+.
T Consensus         1 ivivG~g~aG~~aa~~l~~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----------~~~~-~~~~~   66 (415)
T COG0446           1 IVIVGGGAAGLSAATTLRRLLL-AAEITLIGREPKYSYYRCPLSLYVGGGIAS-LEDLR-----------YPPR-FNRAT   66 (415)
T ss_pred             CEEECCcHHHHHHHHHHHhcCC-CCCEEEEeCCCCCCCCCCccchHHhcccCC-HHHhc-----------ccch-hHHhh
Confidence            5899999999999999999875 789999999999889888887544332211 11110           1112 33577


Q ss_pred             CCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEE
Q 011351          134 GIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVV  213 (488)
Q Consensus       134 ~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVv  213 (488)
                      ++++..+++|+.+|++++.+.+.++ ++.||+|++|||+.+...+   +....++++++...+...+.......++++|+
T Consensus        67 ~i~~~~~~~v~~id~~~~~v~~~~g-~~~yd~LvlatGa~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vv  142 (415)
T COG0446          67 GIDVRTGTEVTSIDPENKVVLLDDG-EIEYDYLVLATGARPRPPP---ISDWEGVVTLRLREDAEALKGGAEPPKDVVVV  142 (415)
T ss_pred             CCEEeeCCEEEEecCCCCEEEECCC-cccccEEEEcCCCcccCCC---ccccCceEEECCHHHHHHHHHHHhccCeEEEE
Confidence            8999999999999999999999999 7999999999999987544   55577899999999998888776667899999


Q ss_pred             CCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEE-EEeCCCc
Q 011351          214 GGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA-VKLEDGS  292 (488)
Q Consensus       214 G~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~-v~l~~g~  292 (488)
                      |+|++|+|+|..+.++|.+|++++..++++++.+.+.+.+.+.+.+++.||+++++..+.+++...+..... +...++.
T Consensus       143 G~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  222 (415)
T COG0446         143 GAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGE  222 (415)
T ss_pred             CCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCc
Confidence            999999999999999999999999999999863328899999999999999999999999998643322111 5778888


Q ss_pred             EEEcCEEEEeecCccCChhhhhcC--CcccCCCEEeCCCCCCC-CCCEEEEceecccCCccCCcccccccHHHHHHHHHH
Q 011351          293 TIDADTIVIGIGAKPTVSPFERVG--LNSSVGGIQVDGQFRTR-MPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH  369 (488)
Q Consensus       293 ~i~~D~vi~a~G~~p~~~~~~~~g--l~~~~g~i~vd~~~~t~-~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~  369 (488)
                      .+++|.+++++|.+|+..+.++.+  +....|++.||++++|+ .++|||+|||+..+....+......+++.+..+++.
T Consensus       223 ~~~~d~~~~~~g~~p~~~l~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~~~i  302 (415)
T COG0446         223 EIKADLVIIGPGERPNVVLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGRI  302 (415)
T ss_pred             EEEeeEEEEeecccccHHHHhhCccceeccCCCEEEccccccCCCCCEEeccceEeeecccCCceeeeechhhHhhhhHH
Confidence            999999999999999977777765  45556789999999997 999999999999876554444557789999999999


Q ss_pred             HHHHHhcCCCCCCCCCCceeEecccc
Q 011351          370 CIKALLSAQTHTYDYLPYFYSRVFEY  395 (488)
Q Consensus       370 ~a~~i~~~~~~~~~~~p~~~~~~~~~  395 (488)
                      ++.++.+. .......++.|.+.+++
T Consensus       303 ~~~~~~~~-~~~~~~~~~~~~~~~~~  327 (415)
T COG0446         303 AAENIAGA-LRIPGLLGTVISDVGDL  327 (415)
T ss_pred             HHHHhccc-cccccccCceEEEEcCe
Confidence            99999865 33335577887887765

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=100.00  E-value=2.7e-33  Score=294.82  Aligned_cols=332  Identities=17%  Similarity=0.203  Sum_probs=233.4

Q ss_pred             cccccccceeecccc--CCCCcccceec--ccccccccccccccccc---------ccCCCCCeEEEEcCchHHHHHHHH
Q 011351            3 SVSNSLSFKHGLSLW--CPQSPSLHRIR--HSSAKNFQRRGFVVAYS---------SFANENREFVIVGGGNAAGYAART   69 (488)
Q Consensus         3 ~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---------~~~~~~~~vvIIGgG~AGl~aA~~   69 (488)
                      ..+|||+.++|++|+  .+|+.+|.+..  .++.++...|+..+...         +...+.++|+|||||+|||++|..
T Consensus       249 ~~~np~p~~~grvCp~~~~Ce~~C~~~~~~~~v~i~~l~r~~~d~~~~~~~~~~~~~~~~~~kkVaIIG~GpaGl~aA~~  328 (639)
T PRK12809        249 HQTSSLPEICGRVCPQDRLCEGACTLKDHSGAVSIGNLERYITDTALAMGWRPDVSKVVPRSEKVAVIGAGPAGLGCADI  328 (639)
T ss_pred             HHhCCcchhhcccCCCCCChHHhccCCCcCCCcChhHHHHHHHHHHHHhCCCCCCCcccCCCCEEEEECcCHHHHHHHHH
Confidence            468999999999997  58999999987  78888888887775421         112356899999999999999999


Q ss_pred             HHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCC
Q 011351           70 FVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE  149 (488)
Q Consensus        70 L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~  149 (488)
                      |++.|+   +|+|+|+++....        .+. ....+.+++.       .......++++..|+++++++.+.     
T Consensus       329 L~~~G~---~Vtv~e~~~~~GG--------~l~-~gip~~~l~~-------~~~~~~~~~~~~~Gv~~~~~~~v~-----  384 (639)
T PRK12809        329 LARAGV---QVDVFDRHPEIGG--------MLT-FGIPPFKLDK-------TVLSQRREIFTAMGIDFHLNCEIG-----  384 (639)
T ss_pred             HHHcCC---cEEEEeCCCCCCC--------eee-ccCCcccCCH-------HHHHHHHHHHHHCCeEEEcCCccC-----
Confidence            999987   7999999875321        110 0000111110       001123467788899999887652     


Q ss_pred             CcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHH--HHHHH---------hhhcCCeEEEECCCHH
Q 011351          150 KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA--DALIS---------SLEKAKKVVVVGGGYI  218 (488)
Q Consensus       150 ~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~--~~~~~---------~~~~~~~vvVvG~G~~  218 (488)
                       +.+.+.+ ....||+|++|||+.....+.+++.+.+|+++...+...  ..+..         ....+++++|+|+|.+
T Consensus       385 -~~~~~~~-l~~~~DaV~latGa~~~~~~~i~g~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~  462 (639)
T PRK12809        385 -RDITFSD-LTSEYDAVFIGVGTYGMMRADLPHEDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDT  462 (639)
T ss_pred             -CcCCHHH-HHhcCCEEEEeCCCCCCCCCCCCCCccCCcEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHH
Confidence             1122222 124699999999997654455677777787653211111  11110         1125789999999999


Q ss_pred             HHHHHHHHHhCCC-cEEEEecCCcC-cccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe---C----
Q 011351          219 GMEVAAAAVGWKL-DTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---E----  289 (488)
Q Consensus       219 g~e~A~~l~~~g~-~v~lv~~~~~~-l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l---~----  289 (488)
                      ++++|..+.++|. +|+++++++.. ++. ...    .+. .+++.||++++++.++++..++++++.++.+   .    
T Consensus       463 a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~-~~~----e~~-~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~  536 (639)
T PRK12809        463 TMDCLRTSIRLNAASVTCAYRRDEVSMPG-SRK----EVV-NAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEP  536 (639)
T ss_pred             HHHHHHHHHHcCCCeEEEeeecCcccCCC-CHH----HHH-HHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCc
Confidence            9999999888885 79999987654 332 122    222 3567899999999999997555666665533   1    


Q ss_pred             --CC-----------cEEEcCEEEEeecCccCC-hhhhhcCCccc-CCCEEeCC----CCCCCCCCEEEEceecccCCcc
Q 011351          290 --DG-----------STIDADTIVIGIGAKPTV-SPFERVGLNSS-VGGIQVDG----QFRTRMPGIFAIGDVAAFPLKM  350 (488)
Q Consensus       290 --~g-----------~~i~~D~vi~a~G~~p~~-~~~~~~gl~~~-~g~i~vd~----~~~t~~~~Ifa~GD~a~~~~~~  350 (488)
                        +|           .++++|.||+|+|+.|+. .++++.++..+ +|.|.||+    +++|+.|+|||+|||+..+.  
T Consensus       537 ~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfA~GD~~~g~~--  614 (639)
T PRK12809        537 GPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHGAD--  614 (639)
T ss_pred             CCCCCccceecCCceEEEECCEEEECcCCCCCccccccccCcccCCCCCEEeCCCcccCcccCCCCEEEcCCCCCCch--
Confidence              12           368999999999999974 56777888765 57788985    48999999999999987532  


Q ss_pred             CCcccccccHHHHHHHHHHHHHHHhc
Q 011351          351 YDRTARVEHVDHARQSAQHCIKALLS  376 (488)
Q Consensus       351 ~~~~~~~~~~~~A~~~g~~~a~~i~~  376 (488)
                              .+..|..+|+.+|++|..
T Consensus       615 --------~vv~Ai~~Gr~AA~~i~~  632 (639)
T PRK12809        615 --------LVVTAMAAGRQAARDMLT  632 (639)
T ss_pred             --------HHHHHHHHHHHHHHHHHH
Confidence                    445688899999988864

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4e-33  Score=263.77  Aligned_cols=266  Identities=26%  Similarity=0.369  Sum_probs=205.6

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCc-EEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCccc-ccCCCCCCCCH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGR-LCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTP  127 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~-V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  127 (488)
                      +.+||+|||||||||+||.++.+.+.   + ++|+|+...-         +++.... ...++|++.. ..+.+...+..
T Consensus         2 ~~~DviIIG~GPAGl~AAiya~r~~l---~~~li~~~~~~g---------g~~~~~~-~venypg~~~~~~g~~L~~~~~   68 (305)
T COG0492           2 KIYDVIIIGGGPAGLTAAIYAARAGL---KVVLILEGGEPG---------GQLTKTT-DVENYPGFPGGILGPELMEQMK   68 (305)
T ss_pred             ceeeEEEECCCHHHHHHHHHHHHcCC---CcEEEEecCCcC---------Cccccce-eecCCCCCccCCchHHHHHHHH
Confidence            46899999999999999999999987   5 6666665322         1111111 4455666665 45555555666


Q ss_pred             hHHHHCCCeEEeCCcEEEEeCCC--cEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCC---CCcEEEecCHHHHHHHHH
Q 011351          128 EWYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALIS  202 (488)
Q Consensus       128 ~~~~~~~i~~~~~~~v~~id~~~--~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~---~~gv~~~~~~~~~~~~~~  202 (488)
                      ++....++++.. ..|..++...  +.|++++++ +.+++||||||..++. +..++..   ..+++++..   ++   .
T Consensus        69 ~~a~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~-~~~~~e~e~~g~gv~yc~~---cd---g  139 (305)
T COG0492          69 EQAEKFGVEIVE-DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARK-LGVPGEEEFEGKGVSYCAT---CD---G  139 (305)
T ss_pred             HHHhhcCeEEEE-EEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcccC-CCCCcchhhcCCceEEeee---cC---c
Confidence            777778999887 6888888774  688888888 9999999999998874 4333321   135666543   22   2


Q ss_pred             hhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHc-CcEEEcCCeEEEEEeCCCC
Q 011351          203 SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDG  281 (488)
Q Consensus       203 ~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~~  281 (488)
                       +..+|+++|||+|.+++|.|..|.+.+.+|++++|++.+.+   .+    .+.+.+++. +|++++++.++++..+  +
T Consensus       140 -~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra---~~----~~~~~l~~~~~i~~~~~~~i~ei~G~--~  209 (305)
T COG0492         140 -FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA---EE----ILVERLKKNVKIEVLTNTVVKEILGD--D  209 (305)
T ss_pred             -cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCc---CH----HHHHHHHhcCCeEEEeCCceeEEecC--c
Confidence             35788999999999999999999999999999999987765   22    444555555 8999999999999843  2


Q ss_pred             cEEEEEeCCCc----EEEcCEEEEeecCccCChhhhhcCCcccCCCEEeCCCCCCCCCCEEEEceecccCC
Q 011351          282 RVAAVKLEDGS----TIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPL  348 (488)
Q Consensus       282 ~v~~v~l~~g~----~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~  348 (488)
                       +..+.+.+.+    ++++|-+++++|..|++++++..+...++|+|.||+.++||+|+|||||||+..+.
T Consensus       210 -v~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~~~~~~~~~~~~g~I~v~~~~~TsvpGifAaGDv~~~~~  279 (305)
T COG0492         210 -VEGVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKGLGVLDENGYIVVDEEMETSVPGIFAAGDVADKNG  279 (305)
T ss_pred             -cceEEEEecCCceEEEEeceEEEecCCCCchHHHhhccccCCCCcEEcCCCcccCCCCEEEeEeeccCcc
Confidence             5677777632    68999999999999999999998885567899999999999999999999999765

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=2.3e-32  Score=248.75  Aligned_cols=389  Identities=22%  Similarity=0.320  Sum_probs=262.9

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC--------------CCCCC------ccccCCCCCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE--------------RPALT------KGYLFPLDKKP  108 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~--------------~~~l~------~~~~~~~~~~~  108 (488)
                      .+.+|++|||||.+|+++|+..++.|.   ++.|+|........              ...++      +.|-++..   
T Consensus        18 ~k~fDylvIGgGSGGvasARrAa~~GA---kv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~---   91 (478)
T KOG0405|consen   18 VKDFDYLVIGGGSGGVASARRAASHGA---KVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPIN---   91 (478)
T ss_pred             ccccceEEEcCCcchhHHhHHHHhcCc---eEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccc---
Confidence            357999999999999999999999987   79999976322100              00000      00111110   


Q ss_pred             CCCCCcccccC----CCCCCCCHhHH----HHCCCeEEeCCcEEEEeCCCcEEEeCCCcE--EEeccEEeccCCCCCcCC
Q 011351          109 ARLPGFHTCVG----SGGERQTPEWY----KEKGIEMIYQDPVTSIDIEKQTLITNSGKL--LKYGSLIVATGCTASRFP  178 (488)
Q Consensus       109 ~~~~~~~~~~~----~~~~~~~~~~~----~~~~i~~~~~~~v~~id~~~~~v~~~~g~~--i~yd~lVlAtG~~~~~~~  178 (488)
                       ....|.+-.-    ..+..++...|    .+.+++++.+ +..-+++.+-.|...++.+  +.+.+++||||++|. +|
T Consensus        92 -~~~~fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G-~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~-~P  168 (478)
T KOG0405|consen   92 -EEGSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEG-RARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPI-IP  168 (478)
T ss_pred             -cccCCcHHHHHhhhhHHHHHHHHHHHhhccccceeEEee-eEEEcCCCceEEEecCCeeEEEecceEEEEeCCccC-CC
Confidence             1111111000    01111122222    2346777765 4444555555777777753  678999999999987 57


Q ss_pred             CCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHH
Q 011351          179 EKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQL  258 (488)
Q Consensus       179 ~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~  258 (488)
                      ++||..+     .   .+++.+.+....+++++|||+|++++|+|..++.+|.+++++.|.+.+|. .||+.+++.+.+.
T Consensus       169 nIpG~E~-----g---idSDgff~Lee~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR-~FD~~i~~~v~~~  239 (478)
T KOG0405|consen  169 NIPGAEL-----G---IDSDGFFDLEEQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLR-GFDEMISDLVTEH  239 (478)
T ss_pred             CCCchhh-----c---cccccccchhhcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhc-chhHHHHHHHHHH
Confidence            7665321     1   23455555567899999999999999999999999999999999999996 5899999999999


Q ss_pred             HHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCCCCCCC
Q 011351          259 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMP  335 (488)
Q Consensus       259 l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~  335 (488)
                      ++.+||++|.+++++++.+..++.. .+....|....+|.++||+|+.|++.-  +++.|+..+ +|-|.||++.+||+|
T Consensus       240 ~~~~ginvh~~s~~~~v~K~~~g~~-~~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~Tnvp  318 (478)
T KOG0405|consen  240 LEGRGINVHKNSSVTKVIKTDDGLE-LVITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNTNVP  318 (478)
T ss_pred             hhhcceeecccccceeeeecCCCce-EEEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEeccccCCCC
Confidence            9999999999999999997766644 344556665669999999999999864  678888876 677999999999999


Q ss_pred             CEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCC---CCCCCCCCceeEeccccCCCCcceeeEEeeCCCC
Q 011351          336 GIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ---THTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG  412 (488)
Q Consensus       336 ~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~---~~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~  412 (488)
                      +||++||+++-          ++.-+.|..+|+.+++.+.++.   ...|..+|.   .+|.++.      +-.+|....
T Consensus       319 ~I~avGDv~gk----------~~LTPVAiaagr~la~rlF~~~~~~kldY~nVp~---vVFshP~------igtVGLtE~  379 (478)
T KOG0405|consen  319 SIWAVGDVTGK----------INLTPVAIAAGRKLANRLFGGGKDTKLDYENVPC---VVFSHPP------IGTVGLTEE  379 (478)
T ss_pred             ceEEeccccCc----------EecchHHHhhhhhHHHHhhcCCCCCccccccCce---EEEecCC------cccccCCHH
Confidence            99999999974          3344568899999999998743   235777773   4555442      112332221


Q ss_pred             ---------cE-EEEccC-----------CCcEEEEEE--ECCEEEEEEeecCChHHhh-HHHHHHhcCCCCC--hhhhc
Q 011351          413 ---------ET-IEIGNF-----------DPKIATFWI--DSGKLKGVLVESGSPEEFQ-LLPTLARSQPFVD--KAKLQ  466 (488)
Q Consensus       413 ---------~~-~~~~~~-----------~~~~~~~~~--~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~  466 (488)
                               ++ ++...|           +..+.++..  ++++++|+++++.++.++. -+.-.++.+.+-.  ..-+.
T Consensus       380 EAiekyg~~~i~vy~s~F~pm~~a~~~~k~kt~mKlvc~~~~eKVvG~hm~G~~s~EilQGf~VAvKmGaTKadFD~tVa  459 (478)
T KOG0405|consen  380 EAIEKYGKGDIKVYTSKFNPMKYAMSGRKEKTLMKLVCAGKSEKVVGVHMCGDDSAEILQGFAVAVKMGATKADFDSTVA  459 (478)
T ss_pred             HHHHHhCccceEEEecCCchhHhHhhcCCcceEEEEEEecCCCcEEEEEEecCCcHHHHhhhhhheecCcchhhhcccee
Confidence                     11 112222           122445544  5699999999877766533 3344455554332  23345


Q ss_pred             CCCcHHHHH
Q 011351          467 QASSVEEAL  475 (488)
Q Consensus       467 ~~~~~~~~~  475 (488)
                      -|||-.|-|
T Consensus       460 IHPTSAEEl  468 (478)
T KOG0405|consen  460 IHPTSAEEL  468 (478)
T ss_pred             ecCCCHHHh
Confidence            566655544

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=100.00  E-value=1.7e-32  Score=282.86  Aligned_cols=270  Identities=23%  Similarity=0.317  Sum_probs=196.9

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHh
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (488)
                      ...+||+|||||+||++||.+|++.|+   +++||++.........           .....++++....+........+
T Consensus       209 ~~~~dvvIIGgGpaGl~aA~~la~~G~---~v~li~~~~GG~~~~~-----------~~~~~~~~~~~~~~~~l~~~l~~  274 (517)
T PRK15317        209 KDPYDVLVVGGGPAGAAAAIYAARKGI---RTGIVAERFGGQVLDT-----------MGIENFISVPETEGPKLAAALEE  274 (517)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCCCeeecc-----------CcccccCCCCCCCHHHHHHHHHH
Confidence            346899999999999999999999988   8999976421100000           00011122222222222334456


Q ss_pred             HHHHCCCeEEeCCcEEEEeCC--CcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCC---CCcEEEecCHHHHHHHHHh
Q 011351          129 WYKEKGIEMIYQDPVTSIDIE--KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALISS  203 (488)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~--~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~---~~gv~~~~~~~~~~~~~~~  203 (488)
                      ++++++++++.+++|++++..  ...+.+.+++++.||+||+|||+.++. +.+++..   ..++++....      ...
T Consensus       275 ~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~-~~ipG~~~~~~~~v~~~~~~------~~~  347 (517)
T PRK15317        275 HVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARWRN-MNVPGEDEYRNKGVAYCPHC------DGP  347 (517)
T ss_pred             HHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcCC-CCCCCHHHhcCceEEEeecc------Cch
Confidence            677889999988899999886  346777888889999999999998764 4445431   1233333211      112


Q ss_pred             hhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHH-cCcEEEcCCeEEEEEeCCCCc
Q 011351          204 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGR  282 (488)
Q Consensus       204 ~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~~~  282 (488)
                      ...+++++|||+|.+|+|+|..|...+.+|+++.+.+.+..   +    ..+.+.+.+ .||++++++.++++..+ +++
T Consensus       348 ~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~---~----~~l~~~l~~~~gI~i~~~~~v~~i~~~-~g~  419 (517)
T PRK15317        348 LFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA---D----QVLQDKLRSLPNVTIITNAQTTEVTGD-GDK  419 (517)
T ss_pred             hcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc---c----HHHHHHHhcCCCcEEEECcEEEEEEcC-CCc
Confidence            34689999999999999999999999999999999876643   2    234555555 59999999999999853 456


Q ss_pred             EEEEEeCC---C--cEEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCC
Q 011351          283 VAAVKLED---G--STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPL  348 (488)
Q Consensus       283 v~~v~l~~---g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~  348 (488)
                      +..+.+.+   |  +++++|.+++++|.+|++++++.. +..+ +|+|.||++++|++|||||+|||+..+.
T Consensus       420 v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~~l~~~-v~~~~~g~i~vd~~l~Ts~p~IyAaGDv~~~~~  490 (517)
T PRK15317        420 VTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEWLKGT-VELNRRGEIIVDARGATSVPGVFAAGDCTTVPY  490 (517)
T ss_pred             EEEEEEEECCCCcEEEEEcCEEEEeECCccCchHHhhh-eeeCCCCcEEECcCCCCCCCCEEECccccCCCC
Confidence            66666543   3  359999999999999999998776 6554 5789999999999999999999998754

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=100.00  E-value=8.7e-32  Score=279.15  Aligned_cols=285  Identities=20%  Similarity=0.299  Sum_probs=195.1

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      +.+||+|||||+|||+||.+|++.|+   +|+|||++.... . ....        .....++++....+......+.+.
T Consensus         3 ~~yDVvIIGgGpAGL~AA~~lar~g~---~V~liE~~~~GG-~-~~~~--------~~i~~~pg~~~~~~~~l~~~l~~~   69 (555)
T TIGR03143         3 EIYDLIIIGGGPAGLSAGIYAGRAKL---DTLIIEKDDFGG-Q-ITIT--------SEVVNYPGILNTTGPELMQEMRQQ   69 (555)
T ss_pred             CcCcEEEECCCHHHHHHHHHHHHCCC---CEEEEecCCCCc-e-EEec--------cccccCCCCcCCCHHHHHHHHHHH
Confidence            45899999999999999999999887   899999864321 1 0000        000111211111111112233445


Q ss_pred             HHHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCCCcCCCCCCCC---CCcEEEecCHHHHHHHHHhh
Q 011351          130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALISSL  204 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~---~~gv~~~~~~~~~~~~~~~~  204 (488)
                      .++.+++++ .++|+.++.+.+  .+.+.++ .+.||+||||||+.++. ++++|.+   ..++++.....      ...
T Consensus        70 ~~~~gv~~~-~~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~~-~~ipG~~~~~~~~v~~~~~~~------~~~  140 (555)
T TIGR03143        70 AQDFGVKFL-QAEVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPRK-LGFPGEEEFTGRGVAYCATCD------GEF  140 (555)
T ss_pred             HHHcCCEEe-ccEEEEEEecCCEEEEEecCC-EEEEeEEEECCCCccCC-CCCCCHHHhCCceEEEEeecC------hhh
Confidence            567799986 468999987653  4566555 48999999999998874 5555532   23444432211      123


Q ss_pred             hcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEE
Q 011351          205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA  284 (488)
Q Consensus       205 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~  284 (488)
                      ..+++++|||+|++|+|+|..|.+++.+|+++++.+.+..   ....   ..+.++..||++++++.|+++..  ++.+.
T Consensus       141 ~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~---~~~~---~~~~~~~~gV~i~~~~~V~~i~~--~~~v~  212 (555)
T TIGR03143       141 FTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTC---AKLI---AEKVKNHPKIEVKFNTELKEATG--DDGLR  212 (555)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcccc---CHHH---HHHHHhCCCcEEEeCCEEEEEEc--CCcEE
Confidence            4689999999999999999999999999999999886532   2222   23334556999999999999973  33333


Q ss_pred             EEE---eCCCcEE----EcCE----EEEeecCccCChhhhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCC
Q 011351          285 AVK---LEDGSTI----DADT----IVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYD  352 (488)
Q Consensus       285 ~v~---l~~g~~i----~~D~----vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~  352 (488)
                      .+.   ..+|++.    ++|.    |++++|++|++.+++. ++..+ +|+|.||++++|+.|||||+|||+....    
T Consensus       213 ~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~-~l~l~~~G~I~vd~~~~Ts~p~IyAaGDv~~~~~----  287 (555)
T TIGR03143       213 YAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSELFKG-VVELDKRGYIPTNEDMETNVPGVYAAGDLRPKEL----  287 (555)
T ss_pred             EEEEEECCCCCEEEEeccccccceEEEEEeCCCCChhHHhh-hcccCCCCeEEeCCccccCCCCEEEceeccCCCc----
Confidence            333   3456532    3676    9999999999988765 45555 5789999999999999999999985321    


Q ss_pred             cccccccHHHHHHHHHHHHHHH
Q 011351          353 RTARVEHVDHARQSAQHCIKAL  374 (488)
Q Consensus       353 ~~~~~~~~~~A~~~g~~~a~~i  374 (488)
                           ..+..|..+|+.+|.+|
T Consensus       288 -----~~v~~A~~~G~~Aa~~i  304 (555)
T TIGR03143       288 -----RQVVTAVADGAIAATSA  304 (555)
T ss_pred             -----chheeHHhhHHHHHHHH
Confidence                 12334777777777766

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=100.00  E-value=4.6e-32  Score=254.08  Aligned_cols=295  Identities=21%  Similarity=0.327  Sum_probs=216.2

Q ss_pred             CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCH
Q 011351           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP  127 (488)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (488)
                      ..++++|||+|+|.+|.+.+..|-...+   +|++|++.+++.|. |.++......-+....             .....
T Consensus        52 ~~kKk~vVVLGsGW~a~S~lk~ldts~Y---dV~vVSPRnyFlFT-PLLpS~~vGTve~rSI-------------vEPIr  114 (491)
T KOG2495|consen   52 GGKKKRVVVLGSGWGAISLLKKLDTSLY---DVTVVSPRNYFLFT-PLLPSTTVGTVELRSI-------------VEPIR  114 (491)
T ss_pred             CCCCceEEEEcCchHHHHHHHhcccccc---ceEEeccccceEEe-eccCCccccceeehhh-------------hhhHH
Confidence            3567899999999999999998877655   89999999998886 5544321111110000             01112


Q ss_pred             hHHHHC--CCeEEeCCcEEEEeCCCcEEEeC----CC----cEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHH
Q 011351          128 EWYKEK--GIEMIYQDPVTSIDIEKQTLITN----SG----KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA  197 (488)
Q Consensus       128 ~~~~~~--~i~~~~~~~v~~id~~~~~v~~~----~g----~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~  197 (488)
                      ...+..  ++.++. ++.+.||++++.|+++    ++    -.+.||+||+|+|+.+.. ..+||- .++.+.++..+|+
T Consensus       115 ~i~r~k~~~~~y~e-Aec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~T-FgipGV-~e~~~FLKEv~dA  191 (491)
T KOG2495|consen  115 AIARKKNGEVKYLE-AECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNT-FGIPGV-EENAHFLKEVEDA  191 (491)
T ss_pred             HHhhccCCCceEEe-cccEeecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCC-CCCCch-hhchhhhhhhhHH
Confidence            222222  456654 7889999999987763    34    368999999999999875 344443 3444567788888


Q ss_pred             HHHHHhhh-----------------cCCeEEEECCCHHHHHHHHHHHhC--------------CCcEEEEecCCcCcccc
Q 011351          198 DALISSLE-----------------KAKKVVVVGGGYIGMEVAAAAVGW--------------KLDTTIIFPENHLLQRL  246 (488)
Q Consensus       198 ~~~~~~~~-----------------~~~~vvVvG~G~~g~e~A~~l~~~--------------g~~v~lv~~~~~~l~~~  246 (488)
                      ++++..+.                 +--+++|||||++|+|+|.+|...              -.+||+++..+.+|+ .
T Consensus       192 qeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~-m  270 (491)
T KOG2495|consen  192 QEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILN-M  270 (491)
T ss_pred             HHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHH-H
Confidence            87755431                 112699999999999999998753              357999999999998 5


Q ss_pred             cCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCC--cEEEcCEEEEeecCccCChhhhhcCCccc---C
Q 011351          247 FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSPFERVGLNSS---V  321 (488)
Q Consensus       247 ~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~---~  321 (488)
                      |+..+.++.++.+.+.||++..++.|+.++..   .+ .+...||  ++|++-+++|+||..|. ++.+.+....+   +
T Consensus       271 Fdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~~---~I-~~~~~~g~~~~iPYG~lVWatG~~~r-p~~k~lm~~i~e~~r  345 (491)
T KOG2495|consen  271 FDKRLVEYAENQFVRDGIDLDTGTMVKKVTEK---TI-HAKTKDGEIEEIPYGLLVWATGNGPR-PVIKDLMKQIDEQGR  345 (491)
T ss_pred             HHHHHHHHHHHHhhhccceeecccEEEeecCc---EE-EEEcCCCceeeecceEEEecCCCCCc-hhhhhHhhcCCccCc
Confidence            89999999999999999999999999999742   22 3444455  47999999999999886 44444322222   4


Q ss_pred             CCEEeCCCCCC-CCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 011351          322 GGIQVDGQFRT-RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  375 (488)
Q Consensus       322 g~i~vd~~~~t-~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~  375 (488)
                      .++.||+++|. +.+||||+|||+..+..       .++.+.|.+||.++|+++-
T Consensus       346 r~L~vDE~LrV~G~~nvfAiGDca~~~~~-------~~tAQVA~QqG~yLAk~fn  393 (491)
T KOG2495|consen  346 RGLAVDEWLRVKGVKNVFAIGDCADQRGL-------KPTAQVAEQQGAYLAKNFN  393 (491)
T ss_pred             eeeeeeceeeccCcCceEEeccccccccC-------ccHHHHHHHHHHHHHHHHH
Confidence            58999999998 89999999999954332       2266789999999999873

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=100.00  E-value=9.5e-32  Score=280.17  Aligned_cols=330  Identities=22%  Similarity=0.255  Sum_probs=222.4

Q ss_pred             cccccccceeeccccCCCCcccceec--cccccccccccccccc-------c-ccCCCCCeEEEEcCchHHHHHHHHHHH
Q 011351            3 SVSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVAY-------S-SFANENREFVIVGGGNAAGYAARTFVE   72 (488)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-------~-~~~~~~~~vvIIGgG~AGl~aA~~L~~   72 (488)
                      -.+|||+.++|++|.++|+.+|.|..  .++.++...|+..+..       . +.....++|+|||+|++||++|..|++
T Consensus        79 ~~~np~~~~~grvc~~~ce~~C~r~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~g~~V~VIGaGpaGL~aA~~l~~  158 (564)
T PRK12771         79 TKDNPFPAVMGRVCYHPCESGCNRGQVDDAVGINAVERFLGDYAIANGWKFPAPAPDTGKRVAVIGGGPAGLSAAYHLRR  158 (564)
T ss_pred             HHhCCcchHhhCcCCchhHHhccCCCCCCCcCHHHHHHHHHHHHHHcCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH
Confidence            46899999999999999999999987  6677777766643221       1 113456899999999999999999999


Q ss_pred             cCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHHHCCCeEEeCCcE-EEEeCCCc
Q 011351           73 HGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPV-TSIDIEKQ  151 (488)
Q Consensus        73 ~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v-~~id~~~~  151 (488)
                      .|+   +|+++|+.+.....   +.  +..+....+.++           .....+++.+.|+++..++.+ .++..+. 
T Consensus       159 ~G~---~V~v~e~~~~~GG~---l~--~gip~~~~~~~~-----------~~~~l~~~~~~Gv~~~~~~~~~~~~~~~~-  218 (564)
T PRK12771        159 MGH---AVTIFEAGPKLGGM---MR--YGIPAYRLPREV-----------LDAEIQRILDLGVEVRLGVRVGEDITLEQ-  218 (564)
T ss_pred             CCC---eEEEEecCCCCCCe---ee--ecCCCccCCHHH-----------HHHHHHHHHHCCCEEEeCCEECCcCCHHH-
Confidence            987   79999998764211   00  001101111000           112234567789998887554 2221111 


Q ss_pred             EEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCC-
Q 011351          152 TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWK-  230 (488)
Q Consensus       152 ~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g-  230 (488)
                             ....||++++|||+.......+++.+..++...-.+............+++++|+|+|.++++.+..+.+++ 
T Consensus       219 -------~~~~~D~Vi~AtG~~~~~~~~i~g~~~~gv~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga  291 (564)
T PRK12771        219 -------LEGEFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGA  291 (564)
T ss_pred             -------HHhhCCEEEEeeCCCCCCcCCCCCCccCCcEEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCC
Confidence                   112589999999987543334455555555443221111110111235789999999999999999888888 


Q ss_pred             CcEEEEecCCcC-cccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcE----EEEEe----CCC---------c
Q 011351          231 LDTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV----AAVKL----EDG---------S  292 (488)
Q Consensus       231 ~~v~lv~~~~~~-l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v----~~v~l----~~g---------~  292 (488)
                      .+|+++.+.+.. ++. ..    ..+. .+.+.||++++++.+.++..++++.+    ..+.+    .+|         .
T Consensus       292 ~~v~ii~r~~~~~~~~-~~----~~~~-~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~  365 (564)
T PRK12771        292 EEVTIVYRRTREDMPA-HD----EEIE-EALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEE  365 (564)
T ss_pred             CEEEEEEecCcccCCC-CH----HHHH-HHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceE
Confidence            578998887642 221 11    2222 34567999999999999975444432    11222    122         3


Q ss_pred             EEEcCEEEEeecCccCChhhhh-cCCcccCCCEEeCC-CCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHH
Q 011351          293 TIDADTIVIGIGAKPTVSPFER-VGLNSSVGGIQVDG-QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHC  370 (488)
Q Consensus       293 ~i~~D~vi~a~G~~p~~~~~~~-~gl~~~~g~i~vd~-~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~  370 (488)
                      ++++|.||+|+|..|+..++++ .++..++|+|.||+ +++|+.|+|||+|||+..+.          .+..|..+|+.+
T Consensus       366 ~i~~D~Vi~A~G~~p~~~~~~~~~gl~~~~G~i~vd~~~~~ts~~~Vfa~GD~~~g~~----------~v~~Av~~G~~a  435 (564)
T PRK12771        366 TLEADLVVLAIGQDIDSAGLESVPGVEVGRGVVQVDPNFMMTGRPGVFAGGDMVPGPR----------TVTTAIGHGKKA  435 (564)
T ss_pred             EEECCEEEECcCCCCchhhhhhccCcccCCCCEEeCCCCccCCCCCEEeccCcCCCch----------HHHHHHHHHHHH
Confidence            7999999999999999888875 56765578899998 78899999999999986432          455688888888


Q ss_pred             HHHHh
Q 011351          371 IKALL  375 (488)
Q Consensus       371 a~~i~  375 (488)
                      |.+|.
T Consensus       436 A~~i~  440 (564)
T PRK12771        436 ARNID  440 (564)
T ss_pred             HHHHH
Confidence            88773

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=99.97  E-value=1.6e-30  Score=256.05  Aligned_cols=289  Identities=24%  Similarity=0.271  Sum_probs=196.4

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHh
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (488)
                      ...++|+|||||++|+++|..|++.|.   +|+++|+.+.....   +..  .......+...           .....+
T Consensus        16 ~~~~~VvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~~gg~---~~~--~~~~~~~~~~~-----------~~~~~~   76 (352)
T PRK12770         16 PTGKKVAIIGAGPAGLAAAGYLACLGY---EVHVYDKLPEPGGL---MLF--GIPEFRIPIER-----------VREGVK   76 (352)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCC---cEEEEeCCCCCCce---eee--cCcccccCHHH-----------HHHHHH
Confidence            345799999999999999999999887   89999988653211   000  00000000000           011234


Q ss_pred             HHHHCCCeEEeCCcEEEEeC----CC-----cEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHH
Q 011351          129 WYKEKGIEMIYQDPVTSIDI----EK-----QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADA  199 (488)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~----~~-----~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~  199 (488)
                      .+.+.+++++.++.+..++.    ..     +.+..+ +..+.||+||||||+.....|.++|.+.++++...  .....
T Consensus        77 ~l~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~lviAtGs~~~~~~~ipg~~~~~v~~~~--~~~~~  153 (352)
T PRK12770         77 ELEEAGVVFHTRTKVCCGEPLHEEEGDEFVERIVSLE-ELVKKYDAVLIATGTWKSRKLGIPGEDLPGVYSAL--EYLFR  153 (352)
T ss_pred             HHHhCCeEEecCcEEeeccccccccccccccccCCHH-HHHhhCCEEEEEeCCCCCCcCCCCCccccCceeHH--HHHHH
Confidence            45667999998876654432    01     111111 12378999999999942235666776666665532  11111


Q ss_pred             HHHh-----------hhcCCeEEEECCCHHHHHHHHHHHhCCCc-EEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEE
Q 011351          200 LISS-----------LEKAKKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV  267 (488)
Q Consensus       200 ~~~~-----------~~~~~~vvVvG~G~~g~e~A~~l~~~g~~-v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~  267 (488)
                      +...           ...+++++|||+|++|+|+|..|...|.+ |+++.+.+....    + ......+.|+++||+++
T Consensus       154 ~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~----~-~~~~~~~~l~~~gi~i~  228 (352)
T PRK12770        154 IRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEA----P-AGKYEIERLIARGVEFL  228 (352)
T ss_pred             hhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhC----C-CCHHHHHHHHHcCCEEe
Confidence            1110           11268999999999999999999999987 999988754221    1 11334456889999999


Q ss_pred             cCCeEEEEEeCCCCcEEEEEe--------------------CCCcEEEcCEEEEeecCccCChhhhh-cCCccc-CCCEE
Q 011351          268 KGASIKNLEAGSDGRVAAVKL--------------------EDGSTIDADTIVIGIGAKPTVSPFER-VGLNSS-VGGIQ  325 (488)
Q Consensus       268 ~~~~v~~i~~~~~~~v~~v~l--------------------~~g~~i~~D~vi~a~G~~p~~~~~~~-~gl~~~-~g~i~  325 (488)
                      +++.+++++..  +++..+.+                    .+++++++|.|++++|++|+..+..+ +++..+ +|++.
T Consensus       229 ~~~~v~~i~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~~~g~~~~~~g~i~  306 (352)
T PRK12770        229 ELVTPVRIIGE--GRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKECLGIELNRKGEIV  306 (352)
T ss_pred             eccCceeeecC--CcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhhhcccCceecCCCcEe
Confidence            99999998743  33433432                    12357999999999999999887766 787765 56799


Q ss_pred             eCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 011351          326 VDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  376 (488)
Q Consensus       326 vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~  376 (488)
                      ||++++|+.|+|||+|||+..+.          .+..|..+|+.+|.+|..
T Consensus       307 vd~~~~t~~~~vyaiGD~~~~~~----------~~~~A~~~g~~aa~~i~~  347 (352)
T PRK12770        307 VDEKHMTSREGVFAAGDVVTGPS----------KIGKAIKSGLRAAQSIHE  347 (352)
T ss_pred             eCCCcccCCCCEEEEcccccCcc----------hHHHHHHHHHHHHHHHHH
Confidence            99999999999999999997532          345688889988888753

>PLN02852 ferredoxin-NADP+ reductase

Probab=99.96  E-value=4.8e-27  Score=235.80  Aligned_cols=299  Identities=18%  Similarity=0.239  Sum_probs=188.2

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHh
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (488)
                      ...++|+||||||||++||..|+++.. ..+|+|+|+.+.. |.   +......+.......+           ...+..
T Consensus        24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~-g~~Vtv~E~~p~p-gG---lvr~gvaP~~~~~k~v-----------~~~~~~   87 (491)
T PLN02852         24 SEPLHVCVVGSGPAGFYTADKLLKAHD-GARVDIIERLPTP-FG---LVRSGVAPDHPETKNV-----------TNQFSR   87 (491)
T ss_pred             CCCCcEEEECccHHHHHHHHHHHhhCC-CCeEEEEecCCCC-cc---eEeeccCCCcchhHHH-----------HHHHHH
Confidence            446799999999999999999997321 3499999999753 22   1110011111111000           112334


Q ss_pred             HHHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHH-------HHHHH
Q 011351          129 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVAD-------ADALI  201 (488)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~-------~~~~~  201 (488)
                      ++...+++++.+..+      ++.+++++.. ..||+||||||+.+...+.++|.+.++++...++..       ...+.
T Consensus        88 ~~~~~~v~~~~nv~v------g~dvtl~~L~-~~yDaVIlAtGa~~~~~l~IpG~d~~gV~~a~~fl~~~ng~~d~~~~~  160 (491)
T PLN02852         88 VATDDRVSFFGNVTL------GRDVSLSELR-DLYHVVVLAYGAESDRRLGIPGEDLPGVLSAREFVWWYNGHPDCVHLP  160 (491)
T ss_pred             HHHHCCeEEEcCEEE------CccccHHHHh-hhCCEEEEecCCCCCCCCCCCCCCCCCeEEHHHHHHHhhcchhhhhhh
Confidence            556678888765433      2334444433 479999999999864456678888889887654421       11111


Q ss_pred             HhhhcCCeEEEECCCHHHHHHHHHHHhC--------------------CC-cEEEEecCCcCcccccCHHH---------
Q 011351          202 SSLEKAKKVVVVGGGYIGMEVAAAAVGW--------------------KL-DTTIIFPENHLLQRLFTPSL---------  251 (488)
Q Consensus       202 ~~~~~~~~vvVvG~G~~g~e~A~~l~~~--------------------g~-~v~lv~~~~~~l~~~~~~~~---------  251 (488)
                      .....+++++|||+|++|+|+|..|.+.                    +. +|+++.|+...-..+...++         
T Consensus       161 ~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l~~~  240 (491)
T PLN02852        161 PDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGLKNV  240 (491)
T ss_pred             hcccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHhccCCC
Confidence            1123579999999999999999998765                    54 59999988532111111111         


Q ss_pred             ----------------------------HHHHHHHHHH---------cCcEEEcCCeEEEEEeC--CCCcEEEEEeC---
Q 011351          252 ----------------------------AQRYEQLYQQ---------NGVKFVKGASIKNLEAG--SDGRVAAVKLE---  289 (488)
Q Consensus       252 ----------------------------~~~~~~~l~~---------~GV~v~~~~~v~~i~~~--~~~~v~~v~l~---  289 (488)
                                                  .+.+.+...+         ++|.|++...+++|..+  +++++.++++.   
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~  320 (491)
T PLN02852        241 RVRIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLERTV  320 (491)
T ss_pred             ceeechhhhccccchhhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEEEee
Confidence                                        1112222222         57999999999999742  23567766653   


Q ss_pred             --------------CCc--EEEcCEEEEeecCc--cCChh-h-hhcCCcc-cCCCEEeCCCCCCCCCCEEEEceecccCC
Q 011351          290 --------------DGS--TIDADTIVIGIGAK--PTVSP-F-ERVGLNS-SVGGIQVDGQFRTRMPGIFAIGDVAAFPL  348 (488)
Q Consensus       290 --------------~g~--~i~~D~vi~a~G~~--p~~~~-~-~~~gl~~-~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~  348 (488)
                                    +|+  +++||.||.++|++  |...+ + ...++.. ++|.|.+|+.++|+.|+|||+|||...|.
T Consensus       321 l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~~~~gv~~n~~G~V~~d~~~~T~ipGvyAaGDi~~Gp~  400 (491)
T PLN02852        321 LEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFDHKRGVVPNVHGRVLSSASGADTEPGLYVVGWLKRGPT  400 (491)
T ss_pred             cCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCCccccCcCeeECCCceEEeCCCCccCCCCEEEeeeEecCCC
Confidence                          122  58999999999998  55443 3 2234443 36889999888899999999999998665


Q ss_pred             ccCCcccccccHHHHHHHHHHHHHHHh
Q 011351          349 KMYDRTARVEHVDHARQSAQHCIKALL  375 (488)
Q Consensus       349 ~~~~~~~~~~~~~~A~~~g~~~a~~i~  375 (488)
                      ...+.     ....|...+..+.+.+.
T Consensus       401 gvI~t-----~~~dA~~ta~~i~~d~~  422 (491)
T PLN02852        401 GIIGT-----NLTCAEETVASIAEDLE  422 (491)
T ss_pred             Ceeee-----cHhhHHHHHHHHHHHHH
Confidence            43222     34445555555444443

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=2.5e-26  Score=208.65  Aligned_cols=295  Identities=23%  Similarity=0.338  Sum_probs=197.5

Q ss_pred             EEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 011351          160 LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  239 (488)
Q Consensus       160 ~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~  239 (488)
                      .+.++..|||||.+|+ +|.+||..    .+.   ..++.+...-..+.+-+|||+|.+++|+|..|+..|.+|++..|+
T Consensus       159 ~~ta~~fvIatG~RPr-Yp~IpG~~----Ey~---ITSDDlFsl~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRS  230 (503)
T KOG4716|consen  159 FLTAENFVIATGLRPR-YPDIPGAK----EYG---ITSDDLFSLPYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRS  230 (503)
T ss_pred             EeecceEEEEecCCCC-CCCCCCce----eee---ecccccccccCCCCceEEEccceeeeehhhhHhhcCCCcEEEEEE
Confidence            5789999999999997 57655531    111   124555555566777889999999999999999999999998886


Q ss_pred             CcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEeecCccCChh--h
Q 011351          240 NHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKPTVSP--F  312 (488)
Q Consensus       240 ~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l---~~g~--~i~~D~vi~a~G~~p~~~~--~  312 (488)
                      - ++ +.||.++.+.+.+.++++||+|.....+..+++.++++.. |..   ..++  +-++|.|+||+|+.+.++-  +
T Consensus       231 I-~L-rGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l~-v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L  307 (503)
T KOG4716|consen  231 I-LL-RGFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKLR-VFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNL  307 (503)
T ss_pred             e-ec-ccccHHHHHHHHHHHHHhCCceeecccceeeeeccCCcEE-EEeecccccccccchhhhhhhhhccccchhhcCC
Confidence            4 33 4599999999999999999999999888888877777642 322   2222  4579999999999998753  5


Q ss_pred             hhcCCccc--CCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCCCCce
Q 011351          313 ERVGLNSS--VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYF  388 (488)
Q Consensus       313 ~~~gl~~~--~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~--~~~~~p~~  388 (488)
                      +..|+..+  .|.|+||+.-+|++|+|||+||+....         ++..+.|.+.|+.+|+.|.++...  .|..+|..
T Consensus       308 ~~~GVk~n~ks~KI~v~~~e~t~vp~vyAvGDIl~~k---------pELTPvAIqsGrlLa~Rlf~gs~q~~dy~~V~TT  378 (503)
T KOG4716|consen  308 DNAGVKTNEKSGKIPVDDEEATNVPYVYAVGDILEDK---------PELTPVAIQSGRLLARRLFAGSTQLMDYDDVATT  378 (503)
T ss_pred             CccceeecccCCccccChHHhcCCCceEEecceecCC---------cccchhhhhhchHHHHHHhcCcceeeeccCCcee
Confidence            66777763  678999999999999999999998742         334556999999999999876543  56666642


Q ss_pred             eEecccc--CCCCcceeeEEeeCCCCcEEEEccC----------C--CcEEEEE---EECCEEEEEEeecCChHHhh-HH
Q 011351          389 YSRVFEY--EGSPRKVWWQFFGDNVGETIEIGNF----------D--PKIATFW---IDSGKLKGVLVESGSPEEFQ-LL  450 (488)
Q Consensus       389 ~~~~~~~--~g~~~~~~~~~~g~~~~~~~~~~~~----------~--~~~~~~~---~~~~~~~g~~~~~~~~~~~~-~~  450 (488)
                      -..-.+|  .|..---.++.+|..+-+ +..+-|          +  .=|.+..   .++.|++|.+.+++.+.+.. -+
T Consensus       379 VFTPLEy~c~GlsEE~Ai~k~g~dnie-vfH~~f~P~E~~ipqrd~~~CY~K~vc~r~~~qkv~G~H~lgPnAgEV~QGf  457 (503)
T KOG4716|consen  379 VFTPLEYGCVGLSEEDAIEKYGEDNIE-VFHSYFKPLEYTIPQRDVRHCYLKAVCERDEDQKVLGLHILGPNAGEVIQGF  457 (503)
T ss_pred             eecchhccccCCCHHHHHHHhCcccEE-EeeccccceEEEcccccCCceEEEEeecccCCceEEEEEEecCchhHHHHHH
Confidence            1111111  111100001112211101 111111          1  1133332   25699999998888887754 33


Q ss_pred             HHHHhcCCCCC--hhhhcCCCcHHHHH
Q 011351          451 PTLARSQPFVD--KAKLQQASSVEEAL  475 (488)
Q Consensus       451 ~~~~~~~~~~~--~~~~~~~~~~~~~~  475 (488)
                      ...++.+.+..  ...+.-||+..|.+
T Consensus       458 aaAlk~glt~~~l~ntigIHPt~aE~F  484 (503)
T KOG4716|consen  458 AAALKCGLTKKDLDNTIGIHPTTAEEF  484 (503)
T ss_pred             HHHHHhcccHHHHhhcccccccchhhe
Confidence            44445554443  12345566666544

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=99.95  E-value=8e-26  Score=248.22  Aligned_cols=280  Identities=16%  Similarity=0.147  Sum_probs=191.7

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (488)
                      .+||+|||||||||+||.+|++.|.   +|+|+|+++.....       .... .   ..+++..   +..+.....+.+
T Consensus       163 ~~dVvIIGaGPAGLaAA~~aar~G~---~V~liD~~~~~GG~-------~~~~-~---~~~~g~~---~~~~~~~~~~~l  225 (985)
T TIGR01372       163 HCDVLVVGAGPAGLAAALAAARAGA---RVILVDEQPEAGGS-------LLSE-A---ETIDGKP---AADWAAATVAEL  225 (985)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC---cEEEEecCCCCCCe-------eecc-c---cccCCcc---HHHHHHHHHHHH
Confidence            5799999999999999999999987   89999998764211       0000 0   0001000   000001122333


Q ss_pred             HHC-CCeEEeCCcEEEEeCCCcEEEeC----------C----C--cEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecC
Q 011351          131 KEK-GIEMIYQDPVTSIDIEKQTLITN----------S----G--KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRD  193 (488)
Q Consensus       131 ~~~-~i~~~~~~~v~~id~~~~~v~~~----------~----g--~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~  193 (488)
                      ... +++++.+++|..++.........          +    .  ..+.||+||||||+.++ .++++|++.+++.+...
T Consensus       226 ~~~~~v~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r-~~pipG~~~pgV~~~~~  304 (985)
T TIGR01372       226 TAMPEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHER-PLVFANNDRPGVMLAGA  304 (985)
T ss_pred             hcCCCcEEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCc-CCCCCCCCCCCcEEchH
Confidence            334 59999888898886543211110          0    1  15899999999999987 45678888899887644


Q ss_pred             HHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeE
Q 011351          194 VADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI  272 (488)
Q Consensus       194 ~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~-~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v  272 (488)
                      .....+- .....+++++|+|+|.+++|+|..|.+.|. .|+++++.+.+         ...+.+.+++.||++++++.+
T Consensus       305 ~~~~l~~-~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~---------~~~l~~~L~~~GV~i~~~~~v  374 (985)
T TIGR01372       305 ARTYLNR-YGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV---------SPEARAEARELGIEVLTGHVV  374 (985)
T ss_pred             HHHHHHh-hCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch---------hHHHHHHHHHcCCEEEcCCeE
Confidence            3322111 112357999999999999999999999996 46788766533         224556788999999999999


Q ss_pred             EEEEeCCCCcEEEEEeC----CCcEEEcCEEEEeecCccCChhhhhcCCccc--C--CCEEeCCCCCCCCCCEEEEceec
Q 011351          273 KNLEAGSDGRVAAVKLE----DGSTIDADTIVIGIGAKPTVSPFERVGLNSS--V--GGIQVDGQFRTRMPGIFAIGDVA  344 (488)
Q Consensus       273 ~~i~~~~~~~v~~v~l~----~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~--~--g~i~vd~~~~t~~~~Ifa~GD~a  344 (488)
                      +++..  ++.+..|.+.    ++++++||.|+++.|.+|++++++.++....  .  +....    .|+.|+||++|||+
T Consensus       375 ~~i~g--~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~~~~~~~~~~~~~----~t~v~gVyaaGD~~  448 (985)
T TIGR01372       375 AATEG--GKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHLFSQRGGKLAWDAAIAAFLP----GDAVQGCILAGAAN  448 (985)
T ss_pred             EEEec--CCcEEEEEEEecCCceEEEECCEEEEcCCcCchhHHHHhcCCCeeeccccCceec----CCCCCCeEEeeccC
Confidence            99973  3445455554    4568999999999999999999988876532  1  11111    37799999999999


Q ss_pred             ccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 011351          345 AFPLKMYDRTARVEHVDHARQSAQHCIKALL  375 (488)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~  375 (488)
                      +..           ....|..+|+.+|..++
T Consensus       449 g~~-----------~~~~A~~eG~~Aa~~i~  468 (985)
T TIGR01372       449 GLF-----------GLAAALADGAAAGAAAA  468 (985)
T ss_pred             Ccc-----------CHHHHHHHHHHHHHHHH
Confidence            743           33457777887777664

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=99.94  E-value=6.3e-26  Score=237.84  Aligned_cols=287  Identities=12%  Similarity=0.096  Sum_probs=176.5

Q ss_pred             Ccccccccceee-ccccCCCCcccceec-ccccccccccccccc------------------------ccccCCCCCeEE
Q 011351            2 ASVSNSLSFKHG-LSLWCPQSPSLHRIR-HSSAKNFQRRGFVVA------------------------YSSFANENREFV   55 (488)
Q Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------------------------~~~~~~~~~~vv   55 (488)
                      +.++|||+.+|| ++|. +|+.+|.+.. .+++++...|++.+.                        +.|.....++|+
T Consensus       309 i~~~NP~p~~~G~RVCp-~CE~aC~r~~dePV~I~~ler~i~d~~~~~~~~~e~y~~~~~~~~~~~~~~~~~~~tgKKVa  387 (1028)
T PRK06567        309 IVIDNPMVAATGHRICN-DCSKACIYQKQDPVNIPLIESNILEETLKLPYGLEIYLLLTRWNPLNIYAPLPKEPTNYNIL  387 (1028)
T ss_pred             HHHhCCChHhhCCccCc-chHHHhcCCCCCCeehhHHHHHHhhhhhhhcccccccccccccccccccCCCCCCCCCCeEE
Confidence            457999999999 8887 7999999987 788888888765431                        112234678999


Q ss_pred             EEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CC--C---------CCCCccccCCCCCCCCCCCCcccccCCCC
Q 011351           56 IVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YE--R---------PALTKGYLFPLDKKPARLPGFHTCVGSGG  122 (488)
Q Consensus        56 IIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~--~~--~---------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (488)
                      ||||||||++||++|++.|+   +||++|+.+..+  |.  .         +.+......       ...|.......  
T Consensus       388 VVGaGPAGLsAA~~La~~Gh---~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~-------~~GG~~~yGIp--  455 (1028)
T PRK06567        388 VTGLGPAGFSLSYYLLRSGH---NVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPR-------GFGGVAEYGIT--  455 (1028)
T ss_pred             EECcCHHHHHHHHHHHhCCC---eEEEEccccccccccccccccchhhhhccchhhhccc-------cCCcccccCcc--
Confidence            99999999999999999988   899999864321  11  0         111100000       00000000000  


Q ss_pred             CCCCHhH------HHHCC--CeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCC-CCCcCCCCCCCCCCcEEEecC
Q 011351          123 ERQTPEW------YKEKG--IEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGC-TASRFPEKIGGYLPGVHYIRD  193 (488)
Q Consensus       123 ~~~~~~~------~~~~~--i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~-~~~~~~~~~g~~~~gv~~~~~  193 (488)
                      .+...+.      ....+  ++++.+..   +   +..++.++-....||+|+||||+ .++ .+.++|.+.+++....+
T Consensus       456 ~R~~k~~l~~i~~il~~g~~v~~~~gv~---l---G~dit~edl~~~gyDAV~IATGA~kpr-~L~IPGeda~GV~sA~D  528 (1028)
T PRK06567        456 VRWDKNNLDILRLILERNNNFKYYDGVA---L---DFNITKEQAFDLGFDHIAFCIGAGQPK-VLDIENFEAKGVKTASD  528 (1028)
T ss_pred             ccchHHHHHHHHHHHhcCCceEEECCeE---E---CccCCHHHHhhcCCCEEEEeCCCCCCC-CCCCCCccCCCeEEHHH
Confidence            0111111      12223  44444432   1   12222222223579999999999 465 45678877778776543


Q ss_pred             HHHHHHHHHh--------hhcCCeEEEECCCHHHHHHHHHHHh-------------------------------------
Q 011351          194 VADADALISS--------LEKAKKVVVVGGGYIGMEVAAAAVG-------------------------------------  228 (488)
Q Consensus       194 ~~~~~~~~~~--------~~~~~~vvVvG~G~~g~e~A~~l~~-------------------------------------  228 (488)
                      +.........        ...+++|+|||||.+|+|+|.....                                     
T Consensus       529 fL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~~d~eia~~f~~h~r~~g  608 (1028)
T PRK06567        529 FLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTEEDKEIAEEFIAHAKLFK  608 (1028)
T ss_pred             HHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhcccccHHHHHHHHHHHHhhc
Confidence            2222111100        1235799999999999999984332                                     


Q ss_pred             --------------CCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC-----
Q 011351          229 --------------WKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-----  289 (488)
Q Consensus       229 --------------~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~-----  289 (488)
                                    .| .|++++|+..--... ...-.+.+.+. .+.||+++.+..+.++..++++.+.++++.     
T Consensus       609 ~~~~~~~v~~l~~~~G-~VtIvYRr~~~empA-~~~~~eEv~~A-~eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~~~  685 (1028)
T PRK06567        609 EAKNNEELRKVFNKLG-GATVYYRGRLQDSPA-YKLNHEELIYA-LALGVDFKENMQPLRINVDKYGHVESVEFENRNRH  685 (1028)
T ss_pred             chhccchhhhhhccCC-ceEEEecCChhhCCC-CCCCHHHHHHH-HHcCcEEEecCCcEEEEecCCCeEEEEEEEEEecc
Confidence                          22 288888775321110 00012344443 556999999999999986666777665442     


Q ss_pred             ---------C-C---------------cEEEcCEEEEeecCccCChh
Q 011351          290 ---------D-G---------------STIDADTIVIGIGAKPTVSP  311 (488)
Q Consensus       290 ---------~-g---------------~~i~~D~vi~a~G~~p~~~~  311 (488)
                               + +               .+++||.||+|+|..||+.+
T Consensus       686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~~  732 (1028)
T PRK06567        686 CEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNTQF  732 (1028)
T ss_pred             cccccccccccccccCCcCcccCCCccccccCCEEEEecccCCcccc
Confidence                     1 1               46899999999999999876

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1.4e-25  Score=192.48  Aligned_cols=276  Identities=21%  Similarity=0.282  Sum_probs=195.4

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCC-ccccCCCCCCCCCCCCccc-ccCCCCCCCCH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALT-KGYLFPLDKKPARLPGFHT-CVGSGGERQTP  127 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  127 (488)
                      .+.+|+|||+|||+.+||.++++...   +-+|+|-...-     ... .+.+. ......++|+|++ ..|.+.+.++.
T Consensus         7 h~e~v~IiGSGPAa~tAAiYaarael---kPllfEG~~~~-----~i~pGGQLt-TTT~veNfPGFPdgi~G~~l~d~mr   77 (322)
T KOG0404|consen    7 HNENVVIIGSGPAAHTAAIYAARAEL---KPLLFEGMMAN-----GIAPGGQLT-TTTDVENFPGFPDGITGPELMDKMR   77 (322)
T ss_pred             eeeeEEEEccCchHHHHHHHHhhccc---CceEEeeeecc-----CcCCCceee-eeeccccCCCCCcccccHHHHHHHH
Confidence            35699999999999999999999865   67788753221     111 12222 2345667888876 45666666777


Q ss_pred             hHHHHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHh--
Q 011351          128 EWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS--  203 (488)
Q Consensus       128 ~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~--  203 (488)
                      ++..++|.+++.. .|.++|...+  ++.+ +.+.+.+|.+|+|||+..+++. .||. .++.+.-+.+..+.-+...  
T Consensus        78 kqs~r~Gt~i~tE-tVskv~~sskpF~l~t-d~~~v~~~avI~atGAsAkRl~-~pg~-ge~~fWqrGiSaCAVCDGaap  153 (322)
T KOG0404|consen   78 KQSERFGTEIITE-TVSKVDLSSKPFKLWT-DARPVTADAVILATGASAKRLH-LPGE-GEGEFWQRGISACAVCDGAAP  153 (322)
T ss_pred             HHHHhhcceeeee-ehhhccccCCCeEEEe-cCCceeeeeEEEecccceeeee-cCCC-CcchHHhcccchhhcccCcch
Confidence            7788899999874 7888887764  4555 4556899999999999887643 2332 1221222222222222221  


Q ss_pred             hhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCc-
Q 011351          204 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR-  282 (488)
Q Consensus       204 ~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~-  282 (488)
                      +.++|..+|||||.+++|-|..|.+.+.+|.+++|++.+..+   ..   +.++..+.-+|++++++.+.+...+ .+. 
T Consensus       154 ifrnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fRAs---~~---Mq~ra~~npnI~v~~nt~~~ea~gd-~~~l  226 (322)
T KOG0404|consen  154 IFRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFRAS---KI---MQQRAEKNPNIEVLYNTVAVEALGD-GKLL  226 (322)
T ss_pred             hhcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhhHH---HH---HHHHHhcCCCeEEEechhhhhhccC-cccc
Confidence            357889999999999999999999999999999999877543   12   2334455668999999887776532 222 


Q ss_pred             ----EEEEEeCCCcEEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCC-CCCCCCCCEEEEceeccc
Q 011351          283 ----VAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDG-QFRTRMPGIFAIGDVAAF  346 (488)
Q Consensus       283 ----v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~-~~~t~~~~Ifa~GD~a~~  346 (488)
                          +..+.+.+.+.++.+-+++++|..|++.+++. .++.| +|+|++-+ .-.|++|++||+||+...
T Consensus       227 ~~l~ikn~~tge~~dl~v~GlFf~IGH~Pat~~l~g-qve~d~~GYi~t~pgts~TsvpG~FAAGDVqD~  295 (322)
T KOG0404|consen  227 NGLRIKNVKTGEETDLPVSGLFFAIGHSPATKFLKG-QVELDEDGYIVTRPGTSLTSVPGVFAAGDVQDK  295 (322)
T ss_pred             cceEEEecccCcccccccceeEEEecCCchhhHhcC-ceeeccCceEEeccCcccccccceeeccccchH
Confidence                33344444567999999999999999999987 45554 67787764 667899999999999874

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=1e-25  Score=205.38  Aligned_cols=272  Identities=21%  Similarity=0.311  Sum_probs=194.3

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHh
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (488)
                      ...+||+||||||||.+||.+.+++|...+  .+-|+-.....+            .....++.+.+...|......+.+
T Consensus       209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTG--l~aerfGGQvld------------T~~IENfIsv~~teGpkl~~ale~  274 (520)
T COG3634         209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTG--LVAERFGGQVLD------------TMGIENFISVPETEGPKLAAALEA  274 (520)
T ss_pred             cCCceEEEEcCCcchhHHHHHHHhhcchhh--hhhhhhCCeecc------------ccchhheeccccccchHHHHHHHH
Confidence            456899999999999999999999987311  111211100000            000111111122222222234556


Q ss_pred             HHHHCCCeEEeCCcEEEEeCC-----CcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCC---CCcEEEecCHHHHHHH
Q 011351          129 WYKEKGIEMIYQDPVTSIDIE-----KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADAL  200 (488)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~-----~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~---~~gv~~~~~~~~~~~~  200 (488)
                      ..+++.+++..-.+++++.+.     ...|++++|-.+..+.+|||||++.+. -++||.+   ..|+.++..      +
T Consensus       275 Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn-~nvPGE~e~rnKGVayCPH------C  347 (520)
T COG3634         275 HVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRN-MNVPGEDEYRNKGVAYCPH------C  347 (520)
T ss_pred             HHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcchhc-CCCCchHHHhhCCeeeCCC------C
Confidence            678889998766677777763     348999999999999999999998775 3456643   356666543      3


Q ss_pred             HHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHH-cCcEEEcCCeEEEEEeCC
Q 011351          201 ISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGS  279 (488)
Q Consensus       201 ~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~  279 (488)
                      ...+.++|+|+|||||.+|+|.|..|+..-.+||+++-.+.+-.       .+.+++.|+. .+++++.+..-+++.. +
T Consensus       348 DGPLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLkA-------D~VLq~kl~sl~Nv~ii~na~Ttei~G-d  419 (520)
T COG3634         348 DGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELKA-------DAVLQDKLRSLPNVTIITNAQTTEVKG-D  419 (520)
T ss_pred             CCcccCCceEEEECCCcchHHHHHhHHhhhheeeeeecchhhhh-------HHHHHHHHhcCCCcEEEecceeeEEec-C
Confidence            33467899999999999999999999998889999976664432       2244444544 4899999999999983 3


Q ss_pred             CCcEEEEEeCC---Cc--EEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCcc
Q 011351          280 DGRVAAVKLED---GS--TIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKM  350 (488)
Q Consensus       280 ~~~v~~v~l~~---g~--~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~  350 (488)
                      +.+|.++...|   |+  .+.-+-|++-+|..||++|++.. ++.+ +|-|.||....||+|+|||+|||+..+.+.
T Consensus       420 g~kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~WLkg~-vel~~rGEIivD~~g~TsvpGvFAAGD~T~~~yKQ  495 (520)
T COG3634         420 GDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGA-VELNRRGEIIVDARGETNVPGVFAAGDCTTVPYKQ  495 (520)
T ss_pred             CceecceEEEeccCCceeEEEeeeeEEEEecccChhHhhch-hhcCcCccEEEecCCCcCCCceeecCcccCCccce
Confidence            46677776644   33  47778899999999999999987 5544 678999999999999999999999987653

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=99.92  E-value=5e-24  Score=214.94  Aligned_cols=289  Identities=18%  Similarity=0.195  Sum_probs=180.9

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC----CCCCC------C--------Cccc---cCCCCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP----YERPA------L--------TKGY---LFPLDKK  107 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~----~~~~~------l--------~~~~---~~~~~~~  107 (488)
                      ...++|+|||||+|||+||++|++.|+   +++++|+++...    |....      +        +..|   .......
T Consensus         8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~---~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~   84 (461)
T PLN02172          8 INSQHVAVIGAGAAGLVAARELRREGH---TVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRE   84 (461)
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhcCC---eEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHh
Confidence            446899999999999999999999987   899999987543    21000      0        0000   0000000


Q ss_pred             ---CCCCCCccc-----------ccCCCCCCCCHhHHHHCCCe--EEeCCcEEEEeCCCc--EEEeCCC--c--EEEecc
Q 011351          108 ---PARLPGFHT-----------CVGSGGERQTPEWYKEKGIE--MIYQDPVTSIDIEKQ--TLITNSG--K--LLKYGS  165 (488)
Q Consensus       108 ---~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~i~--~~~~~~v~~id~~~~--~v~~~~g--~--~i~yd~  165 (488)
                         ..++|....           ..+.+...++.++.+.+++.  ++++++|+++++.+.  .|++.++  .  +..||+
T Consensus        85 ~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~  164 (461)
T PLN02172         85 CMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDA  164 (461)
T ss_pred             hccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCE
Confidence               001111100           01111222334555667887  888999999997654  4555432  2  457999


Q ss_pred             EEeccCC--CCCcCCCCCCC-CCCcE-EEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Q 011351          166 LIVATGC--TASRFPEKIGG-YLPGV-HYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  241 (488)
Q Consensus       166 lVlAtG~--~~~~~~~~~g~-~~~gv-~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~  241 (488)
                      ||+|||.  .|. .|.++|. ..+|. .+..+..+.+     ..++|+|+|||+|.+|+|+|..|...+.+|+++.|...
T Consensus       165 VIvAtG~~~~P~-~P~ipG~~~f~G~~iHs~~yr~~~-----~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~  238 (461)
T PLN02172        165 VVVCNGHYTEPN-VAHIPGIKSWPGKQIHSHNYRVPD-----PFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRASE  238 (461)
T ss_pred             EEEeccCCCCCc-CCCCCCcccCCceEEEecccCCcc-----ccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeecc
Confidence            9999994  454 4555553 23442 1222222211     13689999999999999999999999999999998753


Q ss_pred             CcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcCCcccC
Q 011351          242 LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSV  321 (488)
Q Consensus       242 ~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~  321 (488)
                      +..          . ..+......+..+..|..+..  ++   .|.+.||+++++|.||+|||++++.+|++..+     
T Consensus       239 ~~~----------~-~~~~~~~~~v~~~~~I~~~~~--~g---~V~f~DG~~~~~D~Ii~~TGy~~~~pfL~~~~-----  297 (461)
T PLN02172        239 SDT----------Y-EKLPVPQNNLWMHSEIDTAHE--DG---SIVFKNGKVVYADTIVHCTGYKYHFPFLETNG-----  297 (461)
T ss_pred             ccc----------c-ccCcCCCCceEECCcccceec--CC---eEEECCCCCccCCEEEECCcCCccccccCccc-----
Confidence            311          0 011112344555666766652  33   47899999999999999999999999887533     


Q ss_pred             CCEEeCCC---------CCCC-CCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC
Q 011351          322 GGIQVDGQ---------FRTR-MPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT  379 (488)
Q Consensus       322 g~i~vd~~---------~~t~-~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~  379 (488)
                       .+.+|++         +-.. .|+++.+|=....           ..+.....|++.+|+.+.|...
T Consensus       298 -~i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~~~~-----------~~f~~~E~Qa~~~a~v~sG~~~  353 (461)
T PLN02172        298 -YMRIDENRVEPLYKHVFPPALAPGLSFIGLPAMG-----------IQFVMFEIQSKWVAAVLSGRVT  353 (461)
T ss_pred             -ceeeCCCcchhhHHhhcCCCCCCcEEEEeccccc-----------cCchhHHHHHHHHHHHHcCCCC
Confidence             3334332         1123 4899999943211           1345578899999988876543

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=99.92  E-value=7.5e-25  Score=217.73  Aligned_cols=337  Identities=23%  Similarity=0.209  Sum_probs=228.7

Q ss_pred             cccccccceeeccccCC--CCcccceec--cccccccccccccccc---------cccCCCCCeEEEEcCchHHHHHHHH
Q 011351            3 SVSNSLSFKHGLSLWCP--QSPSLHRIR--HSSAKNFQRRGFVVAY---------SSFANENREFVIVGGGNAAGYAART   69 (488)
Q Consensus         3 ~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~---------~~~~~~~~~vvIIGgG~AGl~aA~~   69 (488)
                      ..+|+++++||++|..+  |..+|....  .+.++....++..+..         .+.....++|.||||||||++||..
T Consensus        62 ~~tn~~p~~~gRvcp~~~~ceg~cv~~~~~~~v~i~~le~~i~d~~~~~g~i~~~~~~~~tg~~VaviGaGPAGl~~a~~  141 (457)
T COG0493          62 HKTNNLPAITGRVCPLGNLCEGACVLGIEELPVNIGALERAIGDKADREGWIPGELPGSRTGKKVAVIGAGPAGLAAADD  141 (457)
T ss_pred             HHhCCCccccCccCCCCCceeeeeeeccCCCchhhhhHHHHHhhHHHHhCCCCCCCCCCCCCCEEEEECCCchHhhhHHH
Confidence            46899999999999987  999999974  8888888777766531         1223445899999999999999999


Q ss_pred             HHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCC
Q 011351           70 FVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE  149 (488)
Q Consensus        70 L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~  149 (488)
                      |.+.|+   +||++|+.+....-    . .|-.+....+.++           ..+..+.+++.|++|+.++++-     
T Consensus       142 L~~~G~---~Vtv~e~~~~~GGl----l-~yGIP~~kl~k~i-----------~d~~i~~l~~~Gv~~~~~~~vG-----  197 (457)
T COG0493         142 LSRAGH---DVTVFERVALDGGL----L-LYGIPDFKLPKDI-----------LDRRLELLERSGVEFKLNVRVG-----  197 (457)
T ss_pred             HHhCCC---eEEEeCCcCCCcee----E-EecCchhhccchH-----------HHHHHHHHHHcCeEEEEcceEC-----
Confidence            999998   89999988654210    0 0111111222111           2345677888999999987652     


Q ss_pred             CcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhh---------hcCCeEEEECCCHHHH
Q 011351          150 KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL---------EKAKKVVVVGGGYIGM  220 (488)
Q Consensus       150 ~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~---------~~~~~vvVvG~G~~g~  220 (488)
                       +.++++.-. -.||+++++||+.......++|.+.++++...++..........         ..+++++|||+|.+++
T Consensus       198 -~~it~~~L~-~e~Dav~l~~G~~~~~~l~i~g~d~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~  275 (457)
T COG0493         198 -RDITLEELL-KEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAM  275 (457)
T ss_pred             -CcCCHHHHH-HhhCEEEEeccccCCCCCCCCCcCCCcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHH
Confidence             222222211 35799999999875555566777778876544333222211111         1238999999999999


Q ss_pred             HHHHHHHhCCC-cEEEEecCCcCcc-cccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC--------C
Q 011351          221 EVAAAAVGWKL-DTTIIFPENHLLQ-RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--------D  290 (488)
Q Consensus       221 e~A~~l~~~g~-~v~lv~~~~~~l~-~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~--------~  290 (488)
                      +++......|. .|+.+.+...--. ...+........+...+.|+.+.+.....++..+++|++..+.+.        +
T Consensus       276 D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~  355 (457)
T COG0493         276 DCAGTALRLGAKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVD  355 (457)
T ss_pred             HHHHHHhhcCCeEEEEeccccccccCCcccccchhhhhhhhhhcCCcccccCCceeEeecCCCcEeeeecccccccCccc
Confidence            99999988887 6776642221100 001112234455667888999999999999987777877655331        1


Q ss_pred             -----------C--cEEEcCEEEEeecCccCChhh--hhcCCccc-CCCEEeCCCC-CCCCCCEEEEceecccCCccCCc
Q 011351          291 -----------G--STIDADTIVIGIGAKPTVSPF--ERVGLNSS-VGGIQVDGQF-RTRMPGIFAIGDVAAFPLKMYDR  353 (488)
Q Consensus       291 -----------g--~~i~~D~vi~a~G~~p~~~~~--~~~gl~~~-~g~i~vd~~~-~t~~~~Ifa~GD~a~~~~~~~~~  353 (488)
                                 |  .++++|.|+.++|+.++....  ...++..+ .|.+.+|+.+ +|+.|++||.||+.....     
T Consensus       356 ~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ts~~~vfa~gD~~~g~~-----  430 (457)
T COG0493         356 GWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRGAA-----  430 (457)
T ss_pred             ccccccCccccCceEEehHHHHHHHhccCCCcccccccccccccCCCCceecccccccccCCCeeeCceeccchh-----
Confidence                       2  257899999999998874432  22245444 6889999988 999999999999998532     


Q ss_pred             ccccccHHHHHHHHHHHHHHHh
Q 011351          354 TARVEHVDHARQSAQHCIKALL  375 (488)
Q Consensus       354 ~~~~~~~~~A~~~g~~~a~~i~  375 (488)
                           .+-.|+.+|+.+|+.|.
T Consensus       431 -----~vv~ai~eGr~aak~i~  447 (457)
T COG0493         431 -----LVVWAIAEGREAAKAID  447 (457)
T ss_pred             -----hhhhHHhhchHHHHhhh
Confidence                 23346777777777654

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=99.89  E-value=1.8e-22  Score=182.42  Aligned_cols=295  Identities=20%  Similarity=0.263  Sum_probs=197.9

Q ss_pred             CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCC--ccccCCCCCCCCCCCCcccccCCCCCCC
Q 011351           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALT--KGYLFPLDKKPARLPGFHTCVGSGGERQ  125 (488)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (488)
                      ..++++|+|||||.+|++.|..+.+.-. .++|-|||+.+.+.|+ |.+.  .+.+...+...                +
T Consensus        36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~-~g~vgIvep~e~HyYQ-PgfTLvGgGl~~l~~sr----------------r   97 (446)
T KOG3851|consen   36 ARKHFKVLVVGGGSGGIGMAAKFYRKLG-SGSVGIVEPAEDHYYQ-PGFTLVGGGLKSLDSSR----------------R   97 (446)
T ss_pred             cccceEEEEEcCCcchhHHHHHHHhhcC-CCceEEecchhhcccC-cceEEeccchhhhhhcc----------------C
Confidence            4568999999999999999999987643 6799999999999887 5442  11111111100                0


Q ss_pred             CHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCC----CCCCcEEEecCHHHHHHHH
Q 011351          126 TPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIG----GYLPGVHYIRDVADADALI  201 (488)
Q Consensus       126 ~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g----~~~~gv~~~~~~~~~~~~~  201 (488)
                      ....+--.+...+. ..|.+++|++++|.+++|++|.||+||||+|..-+ +..++|    .+.|++....+....++..
T Consensus        98 ~~a~liP~~a~wi~-ekv~~f~P~~N~v~t~gg~eIsYdylviA~Giql~-y~~IkGl~Eal~tP~VcSnYSpkyvdk~y  175 (446)
T KOG3851|consen   98 KQASLIPKGATWIK-EKVKEFNPDKNTVVTRGGEEISYDYLVIAMGIQLD-YGKIKGLVEALDTPGVCSNYSPKYVDKVY  175 (446)
T ss_pred             cccccccCCcHHHH-HHHHhcCCCcCeEEccCCcEEeeeeEeeeeeceec-cchhcChHhhccCCCcccccChHHHHHHH
Confidence            01111112344443 57888999999999999999999999999998754 455544    3457777776666666666


Q ss_pred             Hhhh---cCCeEE--------EECCCHHHHHHHH-HHHhCCCc--EEE--EecCCcCcccccCHHHHHHHHHHHHHcCcE
Q 011351          202 SSLE---KAKKVV--------VVGGGYIGMEVAA-AAVGWKLD--TTI--IFPENHLLQRLFTPSLAQRYEQLYQQNGVK  265 (488)
Q Consensus       202 ~~~~---~~~~vv--------VvG~G~~g~e~A~-~l~~~g~~--v~l--v~~~~~~l~~~~~~~~~~~~~~~l~~~GV~  265 (488)
                      +.+.   .+..+-        ..|+-.-.+-++. .+++.|.+  +.+  ...-+.++.   -....+.+++..++++|+
T Consensus       176 ~~~~~fk~GNAIfTfPntpiKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Tsl~~iFg---Vk~Y~~AL~k~~~~rni~  252 (446)
T KOG3851|consen  176 KELMNFKKGNAIFTFPNTPIKCAGAPQKIMYISESYFRKRGVRDNANIIYNTSLPTIFG---VKHYADALEKVIQERNIT  252 (446)
T ss_pred             HHHHhccCCceEEecCCCccccCCCchhhhhhhHHHHHHhCccccccEEEecCccceec---HHHHHHHHHHHHHhcceE
Confidence            6554   222222        2344444444444 34555542  333  333344433   246788899999999999


Q ss_pred             EEcCCeEEEEEeCCCCcEEEEEeCC-C--cEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeCC-CCCC-CCCCEEEE
Q 011351          266 FVKGASIKNLEAGSDGRVAAVKLED-G--STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDG-QFRT-RMPGIFAI  340 (488)
Q Consensus       266 v~~~~~v~~i~~~~~~~v~~v~l~~-g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~-~~~t-~~~~Ifa~  340 (488)
                      +.......++..++...+.. .+.+ |  ++++++++-+....++. +.++.+.+.+..|++.||. .+|. .+||||++
T Consensus       253 vn~krnLiEV~~~~~~AvFe-~L~kPG~t~ei~yslLHv~Ppms~p-e~l~~s~~adktGfvdVD~~TlQs~kypNVFgi  330 (446)
T KOG3851|consen  253 VNYKRNLIEVRTNDRKAVFE-NLDKPGVTEEIEYSLLHVTPPMSTP-EVLANSDLADKTGFVDVDQSTLQSKKYPNVFGI  330 (446)
T ss_pred             eeeccceEEEeccchhhHHH-hcCCCCceeEEeeeeeeccCCCCCh-hhhhcCcccCcccceecChhhhccccCCCceee
Confidence            99999999987543222111 1222 4  46899999999888876 7888888888789999996 5665 79999999


Q ss_pred             ceecccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 011351          341 GDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  375 (488)
Q Consensus       341 GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~  375 (488)
                      |||...|+..        +.+....|...+-+|+.
T Consensus       331 GDc~n~PnsK--------TaAAvaaq~~vv~~nl~  357 (446)
T KOG3851|consen  331 GDCMNLPNSK--------TAAAVAAQSPVVDKNLT  357 (446)
T ss_pred             ccccCCCchh--------hHHHHHhcCchhhhhHH
Confidence            9999988743        22233455666666664

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=99.88  E-value=3e-22  Score=176.19  Aligned_cols=267  Identities=25%  Similarity=0.369  Sum_probs=177.1

Q ss_pred             eEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC----CCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHh
Q 011351           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP----YERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (488)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (488)
                      +.+|||||+||.+||..|+..-. ..+|.|+...+..-    |..  .. .|+...+-...               ...+
T Consensus         1 kfivvgggiagvscaeqla~~~p-sa~illitass~vksvtn~~~--i~-~ylekfdv~eq---------------~~~e   61 (334)
T KOG2755|consen    1 KFIVVGGGIAGVSCAEQLAQLEP-SAEILLITASSFVKSVTNYQK--IG-QYLEKFDVKEQ---------------NCHE   61 (334)
T ss_pred             CeEEEcCccccccHHHHHHhhCC-CCcEEEEeccHHHHHHhhHHH--HH-HHHHhcCcccc---------------chhh
Confidence            47999999999999999999864 78999999876421    110  00 01111000000               0000


Q ss_pred             HHHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCC
Q 011351          129 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAK  208 (488)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~  208 (488)
                      ...+.. +++ + .|..++...+.+++.+|..+.|++|+++||..|...-  .+ .-+.+..+++.+..+.++..+.+.|
T Consensus        62 lg~~f~-~~~-~-~v~~~~s~ehci~t~~g~~~ky~kKOG~tg~kPklq~--E~-~n~~Iv~irDtDsaQllq~kl~kaK  135 (334)
T KOG2755|consen   62 LGPDFR-RFL-N-DVVTWDSSEHCIHTQNGEKLKYFKLCLCTGYKPKLQV--EG-INPKIVGIRDTDSAQLLQCKLVKAK  135 (334)
T ss_pred             hcccHH-HHH-H-hhhhhccccceEEecCCceeeEEEEEEecCCCcceee--cC-CCceEEEEecCcHHHHHHHHHhhcc
Confidence            111111 122 2 3666778889999999999999999999999886322  22 2456777778887888888888999


Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcC----cEE--------EcCCe-----
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNG----VKF--------VKGAS-----  271 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~G----V~v--------~~~~~-----  271 (488)
                      .|+|+|.|-+++|++.++.-  .+|++....+.+...+++|.+.+.+...|+..+    |.+        ..+..     
T Consensus       136 ~VlilgnGgia~El~yElk~--~nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~~iaiKh~q~iea~pk~~~n~vg  213 (334)
T KOG2755|consen  136 IVLILGNGGIAMELTYELKI--LNVTWKIKDEGISATFFDPGAAEFYDINLRADRSTRIIAIKHFQYIEAFPKCEENNVG  213 (334)
T ss_pred             eEEEEecCchhHHHHHHhhc--ceeEEEecchhhhhcccCccHHHHhHhhhhcccccchhhhhhhhhhhhcCcccccCcc
Confidence            99999999999999999865  478888888888888888888777766651111    100        00000     


Q ss_pred             ------------EEEE-------------------EeCCCCcEEEEEeCCC--cEEEcCEEEEeecCccCChhhhhcCCc
Q 011351          272 ------------IKNL-------------------EAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSPFERVGLN  318 (488)
Q Consensus       272 ------------v~~i-------------------~~~~~~~v~~v~l~~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~  318 (488)
                                  ...+                   .+.+...+.......|  ..+.||.+++++|..||.+++-...+.
T Consensus       214 ~algpDw~s~~dl~g~~eseer~l~~l~~~~~~~~d~~d~~sv~~~~~ek~~~~qlt~d~ivSatgvtpn~e~~~~~~lq  293 (334)
T KOG2755|consen  214 PALGPDWHSQIDLQGISESENRSLTYLRNCVITSTDTSDNLSVHYMDKEKMADNQLTCDFIVSATGVTPNSEWAMNKMLQ  293 (334)
T ss_pred             cccCcchhhhcccccchhhhhhhhHHhhhheeeeccchhhcccccccccccccceeeeeEEEeccccCcCceEEecChhh
Confidence                        0000                   0000011111111111  257899999999999999875544444


Q ss_pred             c-cCCCEEeCCCCCCCCCCEEEEceeccc
Q 011351          319 S-SVGGIQVDGQFRTRMPGIFAIGDVAAF  346 (488)
Q Consensus       319 ~-~~g~i~vd~~~~t~~~~Ifa~GD~a~~  346 (488)
                      . ++|++.||+.|+|+.|++||+||++..
T Consensus       294 ~~edggikvdd~m~tslpdvFa~gDvctt  322 (334)
T KOG2755|consen  294 ITEDGGIKVDDAMETSLPDVFAAGDVCTT  322 (334)
T ss_pred             hccccCeeehhhccccccceeeecceecc
Confidence            3 579999999999999999999999984

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=99.87  E-value=8.8e-22  Score=201.71  Aligned_cols=316  Identities=18%  Similarity=0.226  Sum_probs=192.3

Q ss_pred             ccccccceeeccccCCCCcccceec--ccccccccccccccc--------cc-ccCCCCCeEEEEcCchHHHHHHHHHHH
Q 011351            4 VSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVA--------YS-SFANENREFVIVGGGNAAGYAARTFVE   72 (488)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--------~~-~~~~~~~~vvIIGgG~AGl~aA~~L~~   72 (488)
                      ..|.||++||++|++||+.+|...-  .++.++...+.+.+.        +- |.....++|.|||+|||||+||..|.+
T Consensus      1727 ~tnnfpeftgrvcpapcegactlgiie~pv~iksie~aiid~af~egwm~p~pp~~rtg~~vaiigsgpaglaaadqlnk 1806 (2142)
T KOG0399|consen 1727 ETNNFPEFTGRVCPAPCEGACTLGIIEPPVGIKSIECAIIDKAFEEGWMKPCPPAFRTGKRVAIIGSGPAGLAAADQLNK 1806 (2142)
T ss_pred             hhCCCccccCccCCCCcCcceeeecccCCccccchhhHHHHHHHHhcCCccCCcccccCcEEEEEccCchhhhHHHHHhh
Confidence            4799999999999999999999988  666676666555542        22 223456899999999999999999999


Q ss_pred             cCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcE
Q 011351           73 HGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQT  152 (488)
Q Consensus        73 ~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~  152 (488)
                      .|+   .|+++|+.+....    +. .|-.+.-+... .          ...+..+.+.+.||+|+.++++-      +.
T Consensus      1807 ~gh---~v~vyer~dr~gg----ll-~ygipnmkldk-~----------vv~rrv~ll~~egi~f~tn~eig------k~ 1861 (2142)
T KOG0399|consen 1807 AGH---TVTVYERSDRVGG----LL-MYGIPNMKLDK-F----------VVQRRVDLLEQEGIRFVTNTEIG------KH 1861 (2142)
T ss_pred             cCc---EEEEEEecCCcCc----ee-eecCCccchhH-H----------HHHHHHHHHHhhCceEEeecccc------cc
Confidence            998   7999999876421    00 01111100000 0          01234566788899999887652      22


Q ss_pred             EEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHH--HHHHh-------hhcCCeEEEECCCHHHHHHH
Q 011351          153 LITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADAD--ALISS-------LEKAKKVVVVGGGYIGMEVA  223 (488)
Q Consensus       153 v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~--~~~~~-------~~~~~~vvVvG~G~~g~e~A  223 (488)
                      +-+ |+-.-.+|.+|+|+|+...+-.+++|.+..|++..-.+.+..  .+.+.       ..++|+|+|||||.+|-++.
T Consensus      1862 vs~-d~l~~~~daiv~a~gst~prdlpv~grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dci 1940 (2142)
T KOG0399|consen 1862 VSL-DELKKENDAIVLATGSTTPRDLPVPGRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCI 1940 (2142)
T ss_pred             ccH-HHHhhccCeEEEEeCCCCCcCCCCCCccccccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCcccccc
Confidence            322 222246899999999864433456888888886543222221  11111       12578999999999999988


Q ss_pred             HHHHhCCCcEE-EEecC---------CcCccc---ccCHHHH-HHHHHHHHHcCcEEEcCC-eEEEEEeCCCCcEEEE--
Q 011351          224 AAAVGWKLDTT-IIFPE---------NHLLQR---LFTPSLA-QRYEQLYQQNGVKFVKGA-SIKNLEAGSDGRVAAV--  286 (488)
Q Consensus       224 ~~l~~~g~~v~-lv~~~---------~~~l~~---~~~~~~~-~~~~~~l~~~GV~v~~~~-~v~~i~~~~~~~v~~v--  286 (488)
                      ..-.+.|.+-. -++--         +.++|+   .|.-+.. +..++   ..|-+.+.-+ --+++..++++.++++  
T Consensus      1941 gtsvrhg~~sv~n~ellp~pp~~ra~~npwpqwprvfrvdygh~e~~~---~~g~dpr~y~vltk~f~~~~~g~v~gl~~ 2017 (2142)
T KOG0399|consen 1941 GTSVRHGCKSVGNFELLPQPPPERAPDNPWPQWPRVFRVDYGHAEAKE---HYGSDPRTYSVLTKRFIGDDNGNVTGLET 2017 (2142)
T ss_pred             ccchhhccceecceeecCCCCcccCCCCCCccCceEEEeecchHHHHH---HhCCCcceeeeeeeeeeccCCCceeeEEE
Confidence            87777775422 12111         112221   1111111 11111   1122211111 1122222223332222  


Q ss_pred             ----------------EeCC-CcEEEcCEEEEeecCccC-ChhhhhcCCccc-CCCEEe-CCCCCCCCCCEEEEceeccc
Q 011351          287 ----------------KLED-GSTIDADTIVIGIGAKPT-VSPFERVGLNSS-VGGIQV-DGQFRTRMPGIFAIGDVAAF  346 (488)
Q Consensus       287 ----------------~l~~-g~~i~~D~vi~a~G~~p~-~~~~~~~gl~~~-~g~i~v-d~~~~t~~~~Ifa~GD~a~~  346 (488)
                                      +..+ .+.++||+||++.|+... ....++++++.+ ++.|.+ ++.+.|+++.+||+|||-..
T Consensus      2018 vrvew~k~~~g~w~~~ei~~see~~eadlv~lamgf~gpe~~~~~~~~~~~d~rsni~t~~~~y~t~v~~vfaagdcrrg 2097 (2142)
T KOG0399|consen 2018 VRVEWEKDDKGRWQMKEINNSEEIIEADLVILAMGFVGPEKSVIEQLNLKTDPRSNILTPKDSYSTDVAKVFAAGDCRRG 2097 (2142)
T ss_pred             EEEEEEecCCCceEEEEcCCcceeeecceeeeeccccCcchhhhhhcCcccCccccccCCCccccccccceeecccccCC
Confidence                            2222 246899999999999744 345778888876 344544 45688999999999999975


Q ss_pred             CC
Q 011351          347 PL  348 (488)
Q Consensus       347 ~~  348 (488)
                      ..
T Consensus      2098 qs 2099 (2142)
T KOG0399|consen 2098 QS 2099 (2142)
T ss_pred             ce
Confidence            44

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=99.86  E-value=1.7e-21  Score=199.04  Aligned_cols=300  Identities=21%  Similarity=0.288  Sum_probs=155.1

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC----CCCC--------------CCCccc-cCCCCCCCCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP----YERP--------------ALTKGY-LFPLDKKPARL  111 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~----~~~~--------------~l~~~~-~~~~~~~~~~~  111 (488)
                      .++|+|||||++||++|++|.+.|+   +++++|+++...    |...              ..++.. .++....+.+.
T Consensus         1 ~krVaVIGaG~sGL~a~k~l~e~g~---~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~   77 (531)
T PF00743_consen    1 AKRVAVIGAGPSGLAAAKNLLEEGL---EVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDY   77 (531)
T ss_dssp             --EEEEE--SHHHHHHHHHHHHTT----EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCC
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC---CCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCC
Confidence            3799999999999999999999988   899999998654    1110              011111 12222223333


Q ss_pred             CCcccccCCCCCCCCHhHHHHCCC--eEEeCCcEEEEeCCC-------cEEEeCC-Cc--EEEeccEEeccCCCCCc-CC
Q 011351          112 PGFHTCVGSGGERQTPEWYKEKGI--EMIYQDPVTSIDIEK-------QTLITNS-GK--LLKYGSLIVATGCTASR-FP  178 (488)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~v~~id~~~-------~~v~~~~-g~--~i~yd~lVlAtG~~~~~-~~  178 (488)
                      |.+...  .+...++..+.+.+++  .++++++|++++...       ..|++++ |+  +-.||+||+|||....+ +|
T Consensus        78 p~f~~~--~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P  155 (531)
T PF00743_consen   78 PDFPSH--SEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIP  155 (531)
T ss_dssp             SSSEBH--HHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-
T ss_pred             CCCCCH--HHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCC
Confidence            332211  1112233445566666  478889999987532       2566644 32  35799999999975321 22


Q ss_pred             C--CCCCC-CCc-EEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc-Cccccc------
Q 011351          179 E--KIGGY-LPG-VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH-LLQRLF------  247 (488)
Q Consensus       179 ~--~~g~~-~~g-v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~-~l~~~~------  247 (488)
                      .  ++|.+ ..| +.+.++..+.     ...++|+|+|||+|.+|+++|..+.....+|++..|+.. ++++..      
T Consensus       156 ~~~~~G~e~F~G~i~HS~~yr~~-----~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~  230 (531)
T PF00743_consen  156 EPSFPGLEKFKGEIIHSKDYRDP-----EPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPF  230 (531)
T ss_dssp             ----CTGGGHCSEEEEGGG--TG-----GGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC----------------
T ss_pred             hhhhhhhhcCCeeEEccccCcCh-----hhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecccccccccccccccc
Confidence            1  23321 222 2222222221     124789999999999999999999999889988877632 222211      


Q ss_pred             ----------------CHHHHHH---------------------------------HHHHHHHcCcEEEcCCeEEEEEeC
Q 011351          248 ----------------TPSLAQR---------------------------------YEQLYQQNGVKFVKGASIKNLEAG  278 (488)
Q Consensus       248 ----------------~~~~~~~---------------------------------~~~~l~~~GV~v~~~~~v~~i~~~  278 (488)
                                      +..+.+.                                 +...+....|++..  .|++++.+
T Consensus       231 D~~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk~--~I~~~~~~  308 (531)
T PF00743_consen  231 DMVFSTRFSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVKP--DIKRFTEN  308 (531)
T ss_dssp             --------------------------------------------------------------------EE---EEEE-SS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccc
Confidence                            0001111                                 11111222222221  24444321


Q ss_pred             CCCcEEEEEeCCCcEE-EcCEEEEeecCccCChhhhhcCCcccCCCEEeCCCCC---CCCCCEEEEceecccCCccCCcc
Q 011351          279 SDGRVAAVKLEDGSTI-DADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFR---TRMPGIFAIGDVAAFPLKMYDRT  354 (488)
Q Consensus       279 ~~~~v~~v~l~~g~~i-~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~---t~~~~Ifa~GD~a~~~~~~~~~~  354 (488)
                            +|.++||+++ ++|.||+|||++.+.+++++.-+...++.+..-.++-   ...|++..+|=+...     |  
T Consensus       309 ------~v~F~DGs~~e~vD~II~~TGY~~~fpFL~~~~~~~~~~~~~LYk~vfp~~~~~ptLafIG~~~~~-----g--  375 (531)
T PF00743_consen  309 ------SVIFEDGSTEEDVDVIIFCTGYKFSFPFLDESLIKVDDNRVRLYKHVFPPNLDHPTLAFIGLVQPF-----G--  375 (531)
T ss_dssp             ------EEEETTSEEEEE-SEEEE---EE---TTB-TTTT-S-SSSSSEETTTEETETTSTTEEESS-SBSS-----S--
T ss_pred             ------cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----c--
Confidence                  5778999875 6999999999999888887764444333332222221   235789888854321     1  


Q ss_pred             cccccHHHHHHHHHHHHHHHhcCC
Q 011351          355 ARVEHVDHARQSAQHCIKALLSAQ  378 (488)
Q Consensus       355 ~~~~~~~~A~~~g~~~a~~i~~~~  378 (488)
                         ..+..+..||+.+|+-+.|..
T Consensus       376 ---~~fp~~ElQArw~a~v~sG~~  396 (531)
T PF00743_consen  376 ---SIFPIFELQARWAARVFSGRV  396 (531)
T ss_dssp             ----HHHHHHHHHHHHHHHHTTSS
T ss_pred             ---ccccccccccccccccccccc
Confidence               134568889999998887643

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.83  E-value=1.7e-22  Score=183.37  Aligned_cols=188  Identities=30%  Similarity=0.479  Sum_probs=129.1

Q ss_pred             eEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHHH
Q 011351           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKE  132 (488)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (488)
                      ||||||||+||++||.+|++.+.   +++||++.+..+|....++...+............. .      .....+.+..
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~---~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~   70 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGA---KVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPA-R------LFKLVDQLKN   70 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTS---EEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHH-H------HGHHHHHHHH
T ss_pred             CEEEEecHHHHHHHHHHHhcCCC---eEEEEecccccccccccccccccccccccccccccc-c------cccccccccc
Confidence            79999999999999999998776   899999887554432222211110000000000000 0      0012233467


Q ss_pred             CCCeEEeCCcEEEEeCCCcEE----------EeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHH
Q 011351          133 KGIEMIYQDPVTSIDIEKQTL----------ITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS  202 (488)
Q Consensus       133 ~~i~~~~~~~v~~id~~~~~v----------~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~  202 (488)
                      .+++++.++++.+++...+.+          ...++.++.||+||||||+.+.. +.+++.  +.....+...+++.+..
T Consensus        71 ~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~-~~i~g~--~~~~~~~~~~~~~~~~~  147 (201)
T PF07992_consen   71 RGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRT-PNIPGE--EVAYFLRGVDDAQRFLE  147 (201)
T ss_dssp             HTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEE-ESSTTT--TTECBTTSEEHHHHHHT
T ss_pred             ceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccccce-eecCCC--ccccccccccccccccc
Confidence            899998888999999887742          22345679999999999988763 454553  22233456677888888


Q ss_pred             hhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCc
Q 011351          203 SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR  282 (488)
Q Consensus       203 ~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~  282 (488)
                      .....++++|||                                                                    
T Consensus       148 ~~~~~~~v~VvG--------------------------------------------------------------------  159 (201)
T PF07992_consen  148 LLESPKRVAVVG--------------------------------------------------------------------  159 (201)
T ss_dssp             HSSTTSEEEEES--------------------------------------------------------------------
T ss_pred             cccccccccccc--------------------------------------------------------------------
Confidence            777777999999                                                                    


Q ss_pred             EEEEEeCCCcEEEcCEEEEeecCccCChhh-hhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccC
Q 011351          283 VAAVKLEDGSTIDADTIVIGIGAKPTVSPF-ERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFP  347 (488)
Q Consensus       283 v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~-~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~  347 (488)
                                                .+++ +..+++.+ +|++.||+++||+.|||||+|||+..+
T Consensus       160 --------------------------~~~l~~~~~~~~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~  200 (201)
T PF07992_consen  160 --------------------------TEFLAEKLGVELDENGFIKVDENLQTSVPGIYAAGDCAGIY  200 (201)
T ss_dssp             --------------------------TTTSTHHTTSTBTTTSSBEEBTTSBBSSTTEEE-GGGBEES
T ss_pred             --------------------------ccccccccccccccccccccccccccccccccccccccccC
Confidence                                      3555 78888875 788999999999999999999999864

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=99.72  E-value=2.4e-17  Score=149.72  Aligned_cols=177  Identities=23%  Similarity=0.305  Sum_probs=100.1

Q ss_pred             EEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC------CCCCC-CccccCCCCCCCCCCC--Ccc----------
Q 011351           55 VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY------ERPAL-TKGYLFPLDKKPARLP--GFH----------  115 (488)
Q Consensus        55 vIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~------~~~~l-~~~~~~~~~~~~~~~~--~~~----------  115 (488)
                      +|||||++||++|.+|.+.|.+  +++|+|+++...-      ..+.+ +..........+ .+.  ...          
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~--~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   77 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGID--PVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLP-DFESFSFDDSPEWRWPHD   77 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT-----EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS---CCCHSCHHHHHHHHHSBS
T ss_pred             CEECcCHHHHHHHHHHHhCCCC--cEEEEeCCCCCCCeeEEeCCCCccccCccccccccCC-cccccccccCCCCCCCcc
Confidence            7999999999999999999872  3999999865421      00001 000000000000 000  000          


Q ss_pred             cccCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCC--cEEEeCCCcEEEeccEEeccCC--CCCcCCCCCC-CCCCcEEE
Q 011351          116 TCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGC--TASRFPEKIG-GYLPGVHY  190 (488)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~--~~v~~~~g~~i~yd~lVlAtG~--~~~~~~~~~g-~~~~gv~~  190 (488)
                      ...+.+...++..+.++++++++++++|+++..++  ..|++++++++.+|+||+|||.  .|. .|.+++ ... ...+
T Consensus        78 ~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~-~p~~~g~~~~-~~~h  155 (203)
T PF13738_consen   78 FPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPR-IPDIPGSAFR-PIIH  155 (203)
T ss_dssp             SEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB----S-TTGGCS-EEEE
T ss_pred             cCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCC-cccccccccc-ceEe
Confidence            01111112233455567899999999999998765  4788989888999999999996  443 344455 222 2333


Q ss_pred             ecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Q 011351          191 IRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  241 (488)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~  241 (488)
                      ..+..+.     ....+++|+|||+|.+|++++..|.+.+.+|+++.|++.
T Consensus       156 ~~~~~~~-----~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~  201 (203)
T PF13738_consen  156 SADWRDP-----EDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI  201 (203)
T ss_dssp             GGG-STT-----GGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred             hhhcCCh-----hhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence            2221111     123679999999999999999999999999999999874

...

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=99.71  E-value=5e-16  Score=148.57  Aligned_cols=177  Identities=24%  Similarity=0.393  Sum_probs=106.6

Q ss_pred             EEEeccEEeccCCCCCcCCCCCC---CCCCcEEEecCHHHHHHHHHhh-------------hcCCeEEEE---CCCH---
Q 011351          160 LLKYGSLIVATGCTASRFPEKIG---GYLPGVHYIRDVADADALISSL-------------EKAKKVVVV---GGGY---  217 (488)
Q Consensus       160 ~i~yd~lVlAtG~~~~~~~~~~g---~~~~gv~~~~~~~~~~~~~~~~-------------~~~~~vvVv---G~G~---  217 (488)
                      ++....+|+|||-.+........   +..+++.+-   .+.+++...-             +.+|+|+.|   |+..   
T Consensus       298 e~~vGaIIvAtGy~~~Da~~k~EyGYG~~~nVIT~---lElErml~~~GPT~GkvlrpSdg~~pKrVaFIqCVGSRD~~~  374 (622)
T COG1148         298 ELEVGAIIVATGYKPFDATRKEEYGYGKYPNVITN---LELERMLNPNGPTGGKVLRPSDGKPPKRVAFIQCVGSRDFQV  374 (622)
T ss_pred             EEEeceEEEEccccccCcchhhhcCCCCCcchhhH---HHHHHHhccCCCCCceEEecCCCCCCceEEEEEEecCcCccc
Confidence            46788999999987653222111   112333221   2233333211             245677765   6544   


Q ss_pred             -----H------HHHHHHHHHhC--CCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEE
Q 011351          218 -----I------GMEVAAAAVGW--KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA  284 (488)
Q Consensus       218 -----~------g~e~A~~l~~~--g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~  284 (488)
                           +      ++--|...+++  ..+|+++...-+-    ++....+++.+.-++.||+++.+ ++.+|.+.+++++ 
T Consensus       375 ~n~YCSrvCCm~slKqA~~Ike~~Pd~~v~I~YmDiRa----fG~~yEefY~~~Q~~~gV~fIRG-rvaei~e~p~~~l-  448 (622)
T COG1148         375 GNPYCSRVCCMVSLKQAQLIKERYPDTDVTIYYMDIRA----FGKDYEEFYVRSQEDYGVRFIRG-RVAEIAEFPKKKL-  448 (622)
T ss_pred             CChhhHHHHHHHHHhhhhhhhhcCCCcceeEEEEEeec----cCccHHHHHHhhhhhhchhhhcC-ChHHheeCCCCee-
Confidence                 1      12223333333  2467776655433    44455667777666899999988 5777776666663 


Q ss_pred             EEEeCC---C--cEEEcCEEEEeecCccCCh---hhhhcCCccc-CCCEEeC-CCCC---CCCCCEEEEceecc
Q 011351          285 AVKLED---G--STIDADTIVIGIGAKPTVS---PFERVGLNSS-VGGIQVD-GQFR---TRMPGIFAIGDVAA  345 (488)
Q Consensus       285 ~v~l~~---g--~~i~~D~vi~a~G~~p~~~---~~~~~gl~~~-~g~i~vd-~~~~---t~~~~Ifa~GD~a~  345 (488)
                      .|..+|   |  .++++|+||+++|..|...   +.+-+||..+ +|++... +.++   ++.++||.+|-+.+
T Consensus       449 ~V~~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~aqg  522 (622)
T COG1148         449 IVRVEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAAQG  522 (622)
T ss_pred             EEEEEeccCccceecccceEEEeeccccCcchHHHHHhcCcccCCCCccccCCCCcccccccCCcEEEeecccC
Confidence            344433   3  4689999999999998643   4566788765 6776654 4444   58899999996655

>PTZ00188 adrenodoxin reductase; Provisional

Probab=99.69  E-value=1.6e-15  Score=150.25  Aligned_cols=290  Identities=15%  Similarity=0.194  Sum_probs=160.2

Q ss_pred             CCCCCeEEEEcCchHHHHHHHHHH-HcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCC
Q 011351           48 ANENREFVIVGGGNAAGYAARTFV-EHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQT  126 (488)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~-~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (488)
                      ....++|+||||||||++||.+|. +.|+   +|+|+|+.+.+.    .+.. +-..+....  .   ..     ....+
T Consensus        36 ~~~~krVAIVGaGPAGlyaA~~Ll~~~g~---~VtlfEk~p~pg----GLvR-~GVaPdh~~--~---k~-----v~~~f   97 (506)
T PTZ00188         36 EAKPFKVGIIGAGPSALYCCKHLLKHERV---KVDIFEKLPNPY----GLIR-YGVAPDHIH--V---KN-----TYKTF   97 (506)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHhcCC---eEEEEecCCCCc----cEEE-EeCCCCCcc--H---HH-----HHHHH
Confidence            345689999999999999999876 4555   899999998742    1111 111111100  0   00     00111


Q ss_pred             HhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCC--------CC-CCC----CCcEEEecC
Q 011351          127 PEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPE--------KI-GGY----LPGVHYIRD  193 (488)
Q Consensus       127 ~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~--------~~-g~~----~~gv~~~~~  193 (488)
                      ...+...++++..+..+      +..++.++-. -.||.||+|||+.+..+|.        +. +.+    ++|++..++
T Consensus        98 ~~~~~~~~v~f~gnv~V------G~Dvt~eeL~-~~YDAVIlAtGA~~l~ipi~~~~~~~~~~GGe~~~~~l~Gvf~A~d  170 (506)
T PTZ00188         98 DPVFLSPNYRFFGNVHV------GVDLKMEELR-NHYNCVIFCCGASEVSIPIGQQDEDKAVSGGETNPRKQNGIFHARD  170 (506)
T ss_pred             HHHHhhCCeEEEeeeEe------cCccCHHHHH-hcCCEEEEEcCCCCCCCCcccccceeeeccccccccccCcEEehhe
Confidence            22234456776643222      1122222222 3799999999998653330        00 332    456654432


Q ss_pred             H-----HHHH-----HHHHh---hhcCCeEEEECCCHHHHHHHHHHH--------------------hCC-CcEEEEecC
Q 011351          194 V-----ADAD-----ALISS---LEKAKKVVVVGGGYIGMEVAAAAV--------------------GWK-LDTTIIFPE  239 (488)
Q Consensus       194 ~-----~~~~-----~~~~~---~~~~~~vvVvG~G~~g~e~A~~l~--------------------~~g-~~v~lv~~~  239 (488)
                      +     .+.+     .....   +...++++|||.|++++++|..|.                    +.+ .+|+++.|+
T Consensus       171 fV~WYNg~p~~~~~~~~~ayL~p~~~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~~~aL~~L~~s~v~~V~ivgRR  250 (506)
T PTZ00188        171 LIYFYNNMYNDVRCKAVDNYLNSFENFTTSIIIGNGNVSLDIARILIKSPDDLSKTDISSDYLKVIKRHNIKHIYIVGRR  250 (506)
T ss_pred             EEEeecCCCCccccccccccccccCCCCcEEEECCCchHHHHHHHHccCHHHhhcCCCcHHHHHHHHhCCCcEEEEEEec
Confidence            2     0110     11111   124578999999999999999753                    222 257888777


Q ss_pred             CcCccc----------------------cc------CH-----H--------HHHHHHHHHH----------HcCcEEEc
Q 011351          240 NHLLQR----------------------LF------TP-----S--------LAQRYEQLYQ----------QNGVKFVK  268 (488)
Q Consensus       240 ~~~l~~----------------------~~------~~-----~--------~~~~~~~~l~----------~~GV~v~~  268 (488)
                      .-.-..                      -+      +.     .        ..+.+.+..+          .+-+.+++
T Consensus       251 Gp~qaaFT~kElrEL~~l~~~~v~v~~~d~~~~~~~~~~~~~~r~~~r~~~~~~~~l~~~~~~~~~~~~~~~~r~i~l~F  330 (506)
T PTZ00188        251 GFWQSSFTNAELRELISLENTKVILSKKNYDLCCHLKSDEENTNMKKRQHEIFQKMVKNYEEVEKNKEFYKTYKIIEFIF  330 (506)
T ss_pred             CHHHhCCCHHHHHHHhcCCCCeEEEChhhhcccccccchhhhhhhhhhhhhHHHHHHHHHHhhccCccCCCCceEEEEEc
Confidence            211000                      00      00     0        1112222221          14467888


Q ss_pred             CCeEEEEEeCCCCcEEEEEeC-----------CC--cEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeCCCCCC--C
Q 011351          269 GASIKNLEAGSDGRVAAVKLE-----------DG--STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRT--R  333 (488)
Q Consensus       269 ~~~v~~i~~~~~~~v~~v~l~-----------~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t--~  333 (488)
                      ..++.+|.. +++++.++.++           .|  ++++||+|+-++|++...  +..  +..++ .+... ..+.  .
T Consensus       331 ~~sP~ei~~-~~~~v~~v~~~~n~l~~~~~~~tg~~~~~~~~lV~rsiGY~g~p--~~g--~pFd~-~~~n~-~grv~~~  403 (506)
T PTZ00188        331 YFEIRQIRP-IDGAMKNVELELNKNVPMSFSSFKENKVLVTPLVIFATGFKKSN--FAE--NLYNQ-SVQMF-KEDIGQH  403 (506)
T ss_pred             cCCceEEEC-CCCcEeEEEEEEeecccCccCCCCeeEEEEcCEEEEcccccCCC--CCC--CCccc-cCCCC-CCcccCC
Confidence            888888874 24677777665           23  368999999999998742  222  33331 22221 1222  3


Q ss_pred             CCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHH
Q 011351          334 MPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL  374 (488)
Q Consensus       334 ~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i  374 (488)
                      .|++|++|-+...|....|.     +...|...+..+.+.+
T Consensus       404 ~~g~Y~~GWiKrGP~GvIgt-----n~~da~~t~~~v~~d~  439 (506)
T PTZ00188        404 KFAIFKAGWFDKGPKGNIAS-----QILNSKNSTHLVLNFL  439 (506)
T ss_pred             CCCcEEeeecCcCCCceecc-----CcccHHHHHHHHHHHH
Confidence            79999999999888766554     2334555555555544

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=99.68  E-value=8.4e-16  Score=149.25  Aligned_cols=249  Identities=20%  Similarity=0.287  Sum_probs=131.3

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCcc------ccCCCC--CCCCCCCCccc---ccC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKG------YLFPLD--KKPARLPGFHT---CVG  119 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~------~~~~~~--~~~~~~~~~~~---~~~  119 (488)
                      .+|+++||.||++|+.|..|.+.+  ..++..+|+.+.+.++.-.+..+      ++.+.-  ..|..--.|.+   ..+
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~--~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~   79 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHG--DLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHG   79 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH-----EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcC--CCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcC
Confidence            468999999999999999999986  34899999998766553221111      111100  00000000110   000


Q ss_pred             C-------CCCCCC-------HhHHH-HCCCeEEeCCcEEEEeCCC------cEEEeC----CCcEEEeccEEeccCCCC
Q 011351          120 S-------GGERQT-------PEWYK-EKGIEMIYQDPVTSIDIEK------QTLITN----SGKLLKYGSLIVATGCTA  174 (488)
Q Consensus       120 ~-------~~~~~~-------~~~~~-~~~i~~~~~~~v~~id~~~------~~v~~~----~g~~i~yd~lVlAtG~~~  174 (488)
                      .       +...-.       .+|+. +..-.+..+.+|++|++..      .+|.+.    +++.+.++.||||||..|
T Consensus        80 rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P  159 (341)
T PF13434_consen   80 RLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQP  159 (341)
T ss_dssp             -HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE
T ss_pred             ChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCC
Confidence            0       000000       12222 2344477888999998764      356663    346799999999999887


Q ss_pred             CcCCCCCC-CC-CCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCC--cEEEEecCCcCccc-----
Q 011351          175 SRFPEKIG-GY-LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHLLQR-----  245 (488)
Q Consensus       175 ~~~~~~~g-~~-~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~--~v~lv~~~~~~l~~-----  245 (488)
                      . +|.... .. .+.+.+..+....   .+.....++|+|||||.+|.|++..|.+.+.  +|+++.|++.+.+.     
T Consensus       160 ~-iP~~~~~~~~~~~v~Hss~~~~~---~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f  235 (341)
T PF13434_consen  160 R-IPEWFQDLPGSPRVFHSSEYLSR---IDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPF  235 (341)
T ss_dssp             ----GGGGGGTT-TTEEEGGGHHHH---HT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CC
T ss_pred             C-CCcchhhcCCCCCEEEehHhhhc---cccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccc
Confidence            6 343222 11 2556665433222   1124578999999999999999999998875  79999998655431     


Q ss_pred             ---ccCHHH-------------------------------HHHHHHH-----H-HHcCcEEEcCCeEEEEEeCCCCcEEE
Q 011351          246 ---LFTPSL-------------------------------AQRYEQL-----Y-QQNGVKFVKGASIKNLEAGSDGRVAA  285 (488)
Q Consensus       246 ---~~~~~~-------------------------------~~~~~~~-----l-~~~GV~v~~~~~v~~i~~~~~~~v~~  285 (488)
                         .++|+.                               .+.+.+.     + .+..+.++.++.|+.++..+++.+ .
T Consensus       236 ~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~-~  314 (341)
T PF13434_consen  236 VNEIFSPEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGV-R  314 (341)
T ss_dssp             HHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSE-E
T ss_pred             hhhhcCchhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEE-E
Confidence               233322                               1111111     1 223578999999999998765444 4


Q ss_pred             EEeCC-----CcEEEcCEEEEeecCc
Q 011351          286 VKLED-----GSTIDADTIVIGIGAK  306 (488)
Q Consensus       286 v~l~~-----g~~i~~D~vi~a~G~~  306 (488)
                      +.+.+     ..++++|.||+|||++
T Consensus       315 l~~~~~~~~~~~~~~~D~VilATGy~  340 (341)
T PF13434_consen  315 LTLRHRQTGEEETLEVDAVILATGYR  340 (341)
T ss_dssp             EEEEETTT--EEEEEESEEEE---EE
T ss_pred             EEEEECCCCCeEEEecCEEEEcCCcc
Confidence            55544     2468999999999985

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.67  E-value=4.5e-16  Score=154.35  Aligned_cols=242  Identities=19%  Similarity=0.263  Sum_probs=142.2

Q ss_pred             CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC----------------CCC--CCCCcccc-CCCCCCC
Q 011351           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP----------------YER--PALTKGYL-FPLDKKP  108 (488)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~----------------~~~--~~l~~~~~-~~~~~~~  108 (488)
                      .++.++|+|||||+|||++|+.|++.|+   +++++|+.+...                |++  ..+++.+. ++....+
T Consensus         3 ~~~~~~vaIIGAG~sGL~~ar~l~~~g~---~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~   79 (448)
T KOG1399|consen    3 MMMSKDVAVIGAGPAGLAAARELLREGH---EVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFP   79 (448)
T ss_pred             cCCCCceEEECcchHHHHHHHHHHHCCC---CceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCc
Confidence            4567899999999999999999999988   899999998543                111  11111111 1111112


Q ss_pred             CCCCCc-ccccCCCCCCCCHhHHHHCCC--eEEeCCcEEEEeCCC---cEEEeCCC----cEEEeccEEeccCCCC-CcC
Q 011351          109 ARLPGF-HTCVGSGGERQTPEWYKEKGI--EMIYQDPVTSIDIEK---QTLITNSG----KLLKYGSLIVATGCTA-SRF  177 (488)
Q Consensus       109 ~~~~~~-~~~~~~~~~~~~~~~~~~~~i--~~~~~~~v~~id~~~---~~v~~~~g----~~i~yd~lVlAtG~~~-~~~  177 (488)
                      .+.+.+ +.  ..+...++..+.+.+++  .+.++++|..++...   ..|.+.+.    +..-||.|++|||... ..+
T Consensus        80 ~~~~~~~p~--~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~  157 (448)
T KOG1399|consen   80 ERDPRYFPS--HREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRI  157 (448)
T ss_pred             ccCcccCCC--HHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCC
Confidence            221111 00  00111223344455665  477778888888765   25655443    3678999999999873 224


Q ss_pred             CCCCCC---CCCc-EEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHH
Q 011351          178 PEKIGG---YLPG-VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQ  253 (488)
Q Consensus       178 ~~~~g~---~~~g-v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~  253 (488)
                      |.+++.   ..+| +.+.     .+.-......+|+|+|||.|.+|.|++..++....+|.+..+ .-....        
T Consensus       158 P~~~g~~~~~f~G~~iHS-----~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~-~~~~~~--------  223 (448)
T KOG1399|consen  158 PQIPGPGIESFKGKIIHS-----HDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVV-SPKVHV--------  223 (448)
T ss_pred             CcCCCCchhhcCCcceeh-----hhccCcccccCceEEEECCCccHHHHHHHHHHhccCcceeee-cccccc--------
Confidence            444442   2222 1111     111111224679999999999999999999888888877654 100000        


Q ss_pred             HHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcC
Q 011351          254 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG  316 (488)
Q Consensus       254 ~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~g  316 (488)
                      .....+ -.++..+..  |+.+++  ++   .+.+.++....+|.+|+|||+.-...+++..+
T Consensus       224 ~~~~~~-~~~~~~~~~--i~~~~e--~~---~~~~~~~~~~~~D~ii~ctgy~y~fPfl~~~~  278 (448)
T KOG1399|consen  224 EPPEIL-GENLWQVPS--IKSFTE--DG---SVFEKGGPVERVDRIIFCTGYKYKFPFLETLG  278 (448)
T ss_pred             ccccee-ecceEEccc--cccccC--cc---eEEEcCceeEEeeeEEEeeeeEeecceeccCC
Confidence            000001 112222222  455542  22   35667777889999999999998877766543

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.65  E-value=6.4e-14  Score=132.47  Aligned_cols=292  Identities=18%  Similarity=0.265  Sum_probs=176.9

Q ss_pred             CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCcc------cc----CCCC-CCC--------
Q 011351           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKG------YL----FPLD-KKP--------  108 (488)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~------~~----~~~~-~~~--------  108 (488)
                      ++...|++.||-||+-|+.|..|.+.+.  .+...+|+.+.+.|+.-++..+      ++    ...+ ..+        
T Consensus         2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~--~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~   79 (436)
T COG3486           2 MAEVLDLIGIGIGPFNLSLAALLEEHSG--LKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLH   79 (436)
T ss_pred             CCcceeeEEEccCchHHHHHHHhccccC--cceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHHH
Confidence            4567899999999999999999998763  4799999999876653221111      00    0000 000        


Q ss_pred             --CCCCCcccccC----CCCCCCCHhHHHHCCCeEEeCCcEE---EEeCCCc---EEEeCCCcEEEeccEEeccCCCCCc
Q 011351          109 --ARLPGFHTCVG----SGGERQTPEWYKEKGIEMIYQDPVT---SIDIEKQ---TLITNSGKLLKYGSLIVATGCTASR  176 (488)
Q Consensus       109 --~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~v~---~id~~~~---~v~~~~g~~i~yd~lVlAtG~~~~~  176 (488)
                        .++-.|....-    .......-.|....--.++++++|+   .++.+..   .+.+.+++.+.+..|||++|..|..
T Consensus        80 ~h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~~P~I  159 (436)
T COG3486          80 EHGRLYEFLNYETFHIPRREYNDYCQWAASQLPSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGTQPYI  159 (436)
T ss_pred             HcchHhhhhhhhcccccHHHHHHHHHHHHhhCCccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCCCcCC
Confidence              00000000000    0001112244444456677888998   4444433   3666778889999999999999874


Q ss_pred             CCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhC----CCcEEEEecCCcCccc-------
Q 011351          177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW----KLDTTIIFPENHLLQR-------  245 (488)
Q Consensus       177 ~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~----g~~v~lv~~~~~~l~~-------  245 (488)
                      ++.......+.+++...   ...-...+...++|.|||+|.+|.|+-..|...    ..++.++.|+..+++.       
T Consensus       160 P~~f~~l~~~~vfHss~---~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~Skf~~  236 (436)
T COG3486         160 PPCFRSLIGERVFHSSE---YLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDYSKFGL  236 (436)
T ss_pred             ChHHhCcCccceeehHH---HHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCccccchhhh
Confidence            43322222234544321   111112223345599999999999999988754    3357889998766552       


Q ss_pred             -ccCHHHHHH-------------------------------HHHHH------HHcCcEEEcCCeEEEEEeCCCCcEEEEE
Q 011351          246 -LFTPSLAQR-------------------------------YEQLY------QQNGVKFVKGASIKNLEAGSDGRVAAVK  287 (488)
Q Consensus       246 -~~~~~~~~~-------------------------------~~~~l------~~~GV~v~~~~~v~~i~~~~~~~v~~v~  287 (488)
                       .+.|+..++                               +....      .+..|.+..++.+..++..++|++ .+.
T Consensus       237 e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~~-~l~  315 (436)
T COG3486         237 EYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGRY-RLT  315 (436)
T ss_pred             hhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCceE-EEE
Confidence             112221111                               11111      234688999999999998766653 444


Q ss_pred             eC-----CCcEEEcCEEEEeecCccCCh-hhhhcC--Cc-ccCCCEEeCCCCCCCC-----CCEEEEceecc
Q 011351          288 LE-----DGSTIDADTIVIGIGAKPTVS-PFERVG--LN-SSVGGIQVDGQFRTRM-----PGIFAIGDVAA  345 (488)
Q Consensus       288 l~-----~g~~i~~D~vi~a~G~~p~~~-~~~~~g--l~-~~~g~i~vd~~~~t~~-----~~Ifa~GD~a~  345 (488)
                      +.     ..++++.|.||+|||++.... |++.+.  |. +++|...|+.+++...     -.||+.|-+..
T Consensus       316 ~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~h  387 (436)
T COG3486         316 LRHHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELH  387 (436)
T ss_pred             EeeccCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCceeeecCCCCcceEEEeccccc
Confidence            32     335789999999999995544 666554  22 4578899998877521     25999986654

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=99.65  E-value=1.5e-15  Score=152.93  Aligned_cols=189  Identities=17%  Similarity=0.167  Sum_probs=113.5

Q ss_pred             CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC-CCCCCccccCCCCCCCCCCCCcccc------cCC
Q 011351           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE-RPALTKGYLFPLDKKPARLPGFHTC------VGS  120 (488)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~------~~~  120 (488)
                      .+++++|+|||||++||++|++|++.|.+  +++|+|++....-. +-....+...........++.++..      ...
T Consensus         5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~--~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~   82 (443)
T COG2072           5 VATHTDVAIIGAGQSGLAAAYALKQAGVP--DFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFA   82 (443)
T ss_pred             cCCcccEEEECCCHHHHHHHHHHHHcCCC--cEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcc
Confidence            46678999999999999999999999984  29999999744311 0000000111111111111111110      001


Q ss_pred             CCCCCCHhHHHHCCCe--EEeCCcEEEEeCCC----cEEEeCCCcE--EEeccEEeccCCCCC-cCCCCCCCCCCcEEEe
Q 011351          121 GGERQTPEWYKEKGIE--MIYQDPVTSIDIEK----QTLITNSGKL--LKYGSLIVATGCTAS-RFPEKIGGYLPGVHYI  191 (488)
Q Consensus       121 ~~~~~~~~~~~~~~i~--~~~~~~v~~id~~~----~~v~~~~g~~--i~yd~lVlAtG~~~~-~~~~~~g~~~~gv~~~  191 (488)
                      +...+..++++++++.  +..++.|..++.+.    .+|+++++..  +.+|+||+|||.... ..|.++|.+......+
T Consensus        83 ~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G~~~f~g~~~  162 (443)
T COG2072          83 EIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGLDEFKGRIL  162 (443)
T ss_pred             cHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCCCccCCCceEE
Confidence            1122344566666654  34445555555543    3678877765  459999999997432 1333333322111122


Q ss_pred             cCHHHHHHHHH-hhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcC
Q 011351          192 RDVADADALIS-SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  242 (488)
Q Consensus       192 ~~~~~~~~~~~-~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~  242 (488)
                      +    +.+..+ ....+|+|+|||+|.+|++++..|.+.+.+|+++.|++..
T Consensus       163 H----S~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~  210 (443)
T COG2072         163 H----SADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPH  210 (443)
T ss_pred             c----hhcCCCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCc
Confidence            1    222211 2347999999999999999999999999999999998643

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=99.63  E-value=6.9e-15  Score=136.89  Aligned_cols=157  Identities=18%  Similarity=0.233  Sum_probs=100.1

Q ss_pred             CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCH
Q 011351           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP  127 (488)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (488)
                      ....++|.|||+||||+.+|..|.++. ++.+|+|+|+.+.+ |   .+....+.+.+....+.           ...+.
T Consensus        17 qs~~p~vcIVGsGPAGfYtA~~LLk~~-~~~~Vdi~Ek~PvP-F---GLvRyGVAPDHpEvKnv-----------intFt   80 (468)
T KOG1800|consen   17 QSSTPRVCIVGSGPAGFYTAQHLLKRH-PNAHVDIFEKLPVP-F---GLVRYGVAPDHPEVKNV-----------INTFT   80 (468)
T ss_pred             ccCCceEEEECCCchHHHHHHHHHhcC-CCCeeEeeecCCcc-c---ceeeeccCCCCcchhhH-----------HHHHH
Confidence            345679999999999999999999973 36799999999874 2   12221122322222211           12334


Q ss_pred             hHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHH----H--H
Q 011351          128 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADA----L--I  201 (488)
Q Consensus       128 ~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~----~--~  201 (488)
                      ..++.....+..+..|      +..+.+..- +-.||.+|||.|+...+-..+||.+++++...+.+-..-.    .  .
T Consensus        81 ~~aE~~rfsf~gNv~v------G~dvsl~eL-~~~ydavvLaYGa~~dR~L~IPGe~l~~V~Sarefv~Wyng~P~~~~l  153 (468)
T KOG1800|consen   81 KTAEHERFSFFGNVKV------GRDVSLKEL-TDNYDAVVLAYGADGDRRLDIPGEELSGVISAREFVGWYNGLPENQNL  153 (468)
T ss_pred             HHhhccceEEEeccee------cccccHHHH-hhcccEEEEEecCCCCcccCCCCcccccceehhhhhhhccCCCccccc
Confidence            4555566666655333      112222111 2479999999999866556788988889887654322211    0  0


Q ss_pred             HhhhcCCeEEEECCCHHHHHHHHHHH
Q 011351          202 SSLEKAKKVVVVGGGYIGMEVAAAAV  227 (488)
Q Consensus       202 ~~~~~~~~vvVvG~G~~g~e~A~~l~  227 (488)
                      +....+.+++|||.|..++++|..|.
T Consensus       154 e~dls~~~vvIvG~GNVAlDvARiLl  179 (468)
T KOG1800|consen  154 EPDLSGRKVVIVGNGNVALDVARILL  179 (468)
T ss_pred             CcccccceEEEEccCchhhhhhhhhh
Confidence            11123679999999999999999875

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=99.63  E-value=5.5e-14  Score=139.62  Aligned_cols=159  Identities=16%  Similarity=0.151  Sum_probs=114.6

Q ss_pred             EEEECCCHHHHHHH-HHHH----hCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEE
Q 011351          210 VVVVGGGYIGMEVA-AAAV----GWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA  284 (488)
Q Consensus       210 vvVvG~G~~g~e~A-~~l~----~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~  284 (488)
                      =.|++.+.+|+|.+ ..+.    ..|.+|+++...+..++.   .++.+.+.+.+++.|++++.+++|.+++.. ++.+.
T Consensus       218 ~~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG---~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~-~~~V~  293 (422)
T PRK05329        218 EAVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPG---LRLQNALRRAFERLGGRIMPGDEVLGAEFE-GGRVT  293 (422)
T ss_pred             CEEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCch---HHHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEE
Confidence            36889999999998 5554    469999999988887764   378888999999999999999999999864 45555


Q ss_pred             EEEeCCCc--EEEcCEEEEeecCccCChh-----------------------------------hhhcCCcccCCCEEeC
Q 011351          285 AVKLEDGS--TIDADTIVIGIGAKPTVSP-----------------------------------FERVGLNSSVGGIQVD  327 (488)
Q Consensus       285 ~v~l~~g~--~i~~D~vi~a~G~~p~~~~-----------------------------------~~~~gl~~~~g~i~vd  327 (488)
                      .+...+|+  .+++|.||+|+|..+...+                                   +...|+.+|+....+|
T Consensus       294 ~v~~~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d~~~~p~~  373 (422)
T PRK05329        294 AVWTRNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATDATLRPLD  373 (422)
T ss_pred             EEEeeCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceECCCcCccc
Confidence            55555553  5899999999998765433                                   1233444444444455


Q ss_pred             CCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 011351          328 GQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  376 (488)
Q Consensus       328 ~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~  376 (488)
                      ...++..+||||+|++...+++..-...    -..|...|..++++++.
T Consensus       374 ~~g~~~~~nl~a~G~vl~g~d~~~~~~g----~Gva~~ta~~a~~~~~~  418 (422)
T PRK05329        374 SQGGPVIENLYAAGAVLGGYDPIREGCG----SGVALATALHAAEQIAE  418 (422)
T ss_pred             CCCCeeccceEEeeehhcCCchHHhCCC----chhHHHHHHHHHHHHHH
Confidence            5555678999999999998775432211    12466667777777663

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.55  E-value=1.8e-12  Score=126.20  Aligned_cols=313  Identities=20%  Similarity=0.293  Sum_probs=171.0

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC----CCCCCCCCcccc-CCCCCCCCCCCC----cccccCC-
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA----PYERPALTKGYL-FPLDKKPARLPG----FHTCVGS-  120 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~----~~~~~~l~~~~~-~~~~~~~~~~~~----~~~~~~~-  120 (488)
                      +++|+|||||++|++.|.+|.+.-.+...|.|+|+.+.+    +|+.- .+...+ .+........|.    |..+... 
T Consensus         1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~-~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~   79 (474)
T COG4529           1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTE-EPEHLLNVPAARMSAFAPDIPQDFVRWLQKQ   79 (474)
T ss_pred             CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCC-CchhhhccccccccccCCCCchHHHHHHHhc
Confidence            478999999999999999999976545569999998854    35421 111011 000000000000    0000000 


Q ss_pred             ------------CCCCCC-------------HhHHHHCC---CeEEeCCcEEEEeCCC----cEEEeCCCcEEEeccEEe
Q 011351          121 ------------GGERQT-------------PEWYKEKG---IEMIYQDPVTSIDIEK----QTLITNSGKLLKYGSLIV  168 (488)
Q Consensus       121 ------------~~~~~~-------------~~~~~~~~---i~~~~~~~v~~id~~~----~~v~~~~g~~i~yd~lVl  168 (488)
                                  ....+.             ..+.++..   +.++. ++++++....    ..++..+|....+|-+|+
T Consensus        80 ~~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~-~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vl  158 (474)
T COG4529          80 LQRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIR-EEATSVRQDTNAGGYLVTTADGPSEIADIIVL  158 (474)
T ss_pred             ccccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEe-eeeecceeccCCceEEEecCCCCeeeeeEEEE
Confidence                        000001             11112222   44443 4666665552    356778888889999999


Q ss_pred             ccCCCCCcCCCCCCCCCCc-EEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCC--cEEEEecCCcCccc
Q 011351          169 ATGCTASRFPEKIGGYLPG-VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHLLQR  245 (488)
Q Consensus       169 AtG~~~~~~~~~~g~~~~g-v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~--~v~lv~~~~~~l~~  245 (488)
                      |||..+...+. -..++.+ ..+..+...+..+ ..+....+|+|+|+|.+.++....|..+|.  .||++.|+. +.++
T Consensus       159 atgh~~~~~~~-~~~~~~~~~~~ia~~~~~~~l-d~v~~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrG-l~~~  235 (474)
T COG4529         159 ATGHSAPPADP-AARDLKGSPRLIADPYPANAL-DGVDADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRG-LVPR  235 (474)
T ss_pred             eccCCCCCcch-hhhccCCCcceeccccCCccc-ccccCCCceEEecCCchhHHHHHHHhccCCccceEEEeccc-cccC
Confidence            99976543222 1111221 1123333333222 223456679999999999999999999875  688888873 1111


Q ss_pred             c-------------------------------------------------------------------------------
Q 011351          246 L-------------------------------------------------------------------------------  246 (488)
Q Consensus       246 ~-------------------------------------------------------------------------------  246 (488)
                      .                                                                               
T Consensus       236 ~h~~~~~~p~~d~~~~p~~s~~~L~~~vR~~l~e~e~~g~~w~~v~D~lR~~~~~~wq~l~~~er~rf~rH~~~~~dvHr  315 (474)
T COG4529         236 PHIPVPYEPLGDFLSDPANSALSLLSIVRLLLREAEEAGQDWRDVVDGLRPQGQWIWQNLPAVERRRFERHLRPIWDVHR  315 (474)
T ss_pred             CCCCCCccccccccchhhhhhhhHHHHHHHHHHHHHHhCCCHHHHHHhhhhhhhHHHHhCCHHHHHHHHHhcccHHHHHH
Confidence            0                                                                               


Q ss_pred             --cCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC--C-CcEEEcCEEEEeecCccCCh-----hhh---
Q 011351          247 --FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--D-GSTIDADTIVIGIGAKPTVS-----PFE---  313 (488)
Q Consensus       247 --~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~--~-g~~i~~D~vi~a~G~~p~~~-----~~~---  313 (488)
                        +.+.+...+.+.+.+.-++++-+ ++..|.....+..+.+...  + -+++++|.||.|+|..+...     ++.   
T Consensus       316 ~R~a~~v~~~~~~~~a~G~~~l~ag-~~~~i~~~~eg~~v~~r~rg~~~~~~l~~~~VIn~~g~~~~~~~~s~~~L~sl~  394 (474)
T COG4529         316 FRLAPAVQAAVPQLLAEGLLELVAG-RVVSIDREGEGRAVTYRERGKQHEEELDVDAVINTTGPAHDNSLSSDPFLRSLG  394 (474)
T ss_pred             hhhhHHHHhhhhHHhhcchhheecC-ceeecccccCCceEEeeccccCccceeeeeEEEEcCCcCcCCCccchHHHHHHH
Confidence              00111111222223333344444 4555554444422222211  1 24689999999999876532     333   


Q ss_pred             hcCCcc---cCCCEEeCCCCCC------CCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 011351          314 RVGLNS---SVGGIQVDGQFRT------RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  375 (488)
Q Consensus       314 ~~gl~~---~~g~i~vd~~~~t------~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~  375 (488)
                      +.|+..   ...|+.|+++.+.      ..+++||+|..+.....      .+..+..-+.|+..+|..++
T Consensus       395 ~~Gl~rpd~~~lGl~v~~~~~v~~~~g~~~~~~fa~Gplt~G~f~------ei~~vP~v~~qa~~~A~~l~  459 (474)
T COG4529         395 ENGLARPDPPGLGLDVSDDSEVLGEDGERVTGLFAAGPLTRGTFW------EIDGVPDVRVQAARLAAQLA  459 (474)
T ss_pred             hCCccccCCCCCceeeCCCCcccCCCCccccCceeeccccCCchh------hhccChHHHHHHHHHHHHHh
Confidence            335442   2467889887664      46899999988864321      13334445566666776666

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.47  E-value=6.9e-13  Score=100.64  Aligned_cols=80  Identities=39%  Similarity=0.653  Sum_probs=74.6

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL  288 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l  288 (488)
                      +++|||+|++|+|+|..|.+++.+|+++++.+.++ +.+++++.+.+.+.+++.||++++++.+++++.++++ +. |++
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~-~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~-V~~   77 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL-PGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG-VE-VTL   77 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS-TTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTS-EE-EEE
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh-hhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EE-EEE
Confidence            58999999999999999999999999999999999 4689999999999999999999999999999987666 65 888


Q ss_pred             CCC
Q 011351          289 EDG  291 (488)
Q Consensus       289 ~~g  291 (488)
                      +||
T Consensus        78 ~~g   80 (80)
T PF00070_consen   78 EDG   80 (80)
T ss_dssp             ETS
T ss_pred             ecC
Confidence            886

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK09897 hypothetical protein; Provisional

Probab=99.36  E-value=3.8e-10  Score=115.46  Aligned_cols=170  Identities=16%  Similarity=0.147  Sum_probs=95.4

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC----CCCCCCCccccCCC--CCCCCCCCCccccc------
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP----YERPALTKGYLFPL--DKKPARLPGFHTCV------  118 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~----~~~~~l~~~~~~~~--~~~~~~~~~~~~~~------  118 (488)
                      +++|+|||||++|+++|.+|.+.+. ..+|+|||+.....    |....-+..++.+.  ...+...+.|..+.      
T Consensus         1 m~~IAIIGgGp~Gl~~a~~L~~~~~-~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~   79 (534)
T PRK09897          1 MKKIAIVGAGPTGIYTFFSLLQQQT-PLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDS   79 (534)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhcCC-CCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHH
Confidence            4689999999999999999998653 56899999976432    33211111111000  00000000011000      


Q ss_pred             -------------C-CCCCCC-----CHh-------HHHHCC--CeEEeCCcEEEEeCCCc--EEEeCC-CcEEEeccEE
Q 011351          119 -------------G-SGGERQ-----TPE-------WYKEKG--IEMIYQDPVTSIDIEKQ--TLITNS-GKLLKYGSLI  167 (488)
Q Consensus       119 -------------~-~~~~~~-----~~~-------~~~~~~--i~~~~~~~v~~id~~~~--~v~~~~-g~~i~yd~lV  167 (488)
                                   . .-.-+.     +.+       .+...+  +.++.+++|++++....  .+++.+ +..+.+|+||
T Consensus        80 ~~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VV  159 (534)
T PRK09897         80 HLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAV  159 (534)
T ss_pred             HHHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEE
Confidence                         0 000000     111       112334  67777789999987654  455544 4678999999


Q ss_pred             eccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhC
Q 011351          168 VATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW  229 (488)
Q Consensus       168 lAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~  229 (488)
                      +|||..+...+   .. .+  .++.+.++.. ....+ .+.+|+|+|.|+++++++..|...
T Consensus       160 LAtGh~~p~~~---~~-~~--~yi~~pw~~~-~~~~i-~~~~V~I~GtGLt~iD~v~~Lt~~  213 (534)
T PRK09897        160 IATGHVWPDEE---EA-TR--TYFPSPWSGL-MEAKV-DACNVGIMGTSLSGLDAAMAVAIQ  213 (534)
T ss_pred             ECCCCCCCCCC---hh-hc--cccCCCCcch-hhcCC-CCCeEEEECCCHHHHHHHHHHHhc
Confidence            99997532111   11 11  2233333322 11222 368999999999999999998755

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=99.33  E-value=1.3e-12  Score=126.93  Aligned_cols=297  Identities=17%  Similarity=0.245  Sum_probs=153.1

Q ss_pred             eEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC-------------------------------------------
Q 011351           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA-------------------------------------------   89 (488)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~-------------------------------------------   89 (488)
                      +|+|||+|.|||++|..|.+. +   +|+|++|.+..                                           
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~-~---~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~   84 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS-F---RVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEF   84 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC-C---cEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHH
Confidence            899999999999999999886 4   89999998721                                           


Q ss_pred             -----------------CCCCCCCCccccCC--CCCCCCCCCCcccccCCCCCCCCHhHHHH-CCCeEEeCCcEEEEeCC
Q 011351           90 -----------------PYERPALTKGYLFP--LDKKPARLPGFHTCVGSGGERQTPEWYKE-KGIEMIYQDPVTSIDIE  149 (488)
Q Consensus        90 -----------------~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~v~~id~~  149 (488)
                                       +|++..-. .+...  ......++......+|+..+..+....++ .+|+++.+..+.++-.+
T Consensus        85 iv~~~~~ai~~Li~~Gv~FDr~~~g-~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~  163 (518)
T COG0029          85 IVSEAPEAIEWLIDLGVPFDRDEDG-RLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIE  163 (518)
T ss_pred             HHHhHHHHHHHHHHcCCCCcCCCCC-ceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhc
Confidence                             23322110 01110  01111122222223444333333333333 69999988777777666


Q ss_pred             Cc-EE---Ee-CC-C--cEEEeccEEeccCCCCCcCCCC---CCCCCCcEE-------EecCHHHHHHHHHhhhcCCeEE
Q 011351          150 KQ-TL---IT-NS-G--KLLKYGSLIVATGCTASRFPEK---IGGYLPGVH-------YIRDVADADALISSLEKAKKVV  211 (488)
Q Consensus       150 ~~-~v---~~-~~-g--~~i~yd~lVlAtG~~~~~~~~~---~g~~~~gv~-------~~~~~~~~~~~~~~~~~~~~vv  211 (488)
                      ++ .+   .+ .. +  ..+.++.+|||||.....+...   .+...+|+-       .+.+       .+..+...+.+
T Consensus       164 ~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~ly~~TTNp~~~~GdGIamA~rAGa~v~D-------lEFvQFHPT~l  236 (518)
T COG0029         164 DGIGVAGVLVLNRNGELGTFRAKAVVLATGGLGGLYAYTTNPKGSTGDGIAMAWRAGAAVAD-------LEFVQFHPTAL  236 (518)
T ss_pred             CCceEeEEEEecCCCeEEEEecCeEEEecCCCcccccccCCCccccccHHHHHHHcCCeecC-------ccceeecccee
Confidence            55 22   22 22 2  3578899999999854333211   111111110       0110       01112222333


Q ss_pred             EECCCHHHHHHHHHHHhCCCcEEEE-ecCCcCcccc------cCH-HHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcE
Q 011351          212 VVGGGYIGMEVAAAAVGWKLDTTII-FPENHLLQRL------FTP-SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV  283 (488)
Q Consensus       212 VvG~G~~g~e~A~~l~~~g~~v~lv-~~~~~~l~~~------~~~-~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v  283 (488)
                      -.+.+.. .-+...++-.|  -.|+ ..+.++++..      .+. -++..+...+++.|-+++++.+  .+.   +.  
T Consensus       237 ~~~~~~~-~LiSEAVRGEG--A~L~~~~GeRFm~~~~p~~ELAPRDVVARAI~~e~~~~g~~V~LD~s--~~~---~~--  306 (518)
T COG0029         237 YIPQRRA-FLISEAVRGEG--AILVNEDGERFMPDYHPRGELAPRDVVARAIDAEMKRGGADVFLDIS--HIP---GD--  306 (518)
T ss_pred             cCCCCcc-ceeehhhhcCc--cEEECCCCCccccCCCCccccchHHHHHHHHHHHHHhcCCeEEEecc--CCC---ch--
Confidence            3331111 11112222222  2222 2344555421      122 3556677778887776666532  111   00  


Q ss_pred             EEEEeCCCcEEEc-CEEEEeecCccCChhhhhcCCc-ccCCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHH
Q 011351          284 AAVKLEDGSTIDA-DTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVD  361 (488)
Q Consensus       284 ~~v~l~~g~~i~~-D~vi~a~G~~p~~~~~~~~gl~-~~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~  361 (488)
                         .++  +.+|. .......|..|..+.+.-.... ...|||.||.+.||++|++||+|.|+.....-.++.+ .++.-
T Consensus       307 ---~~~--~rFP~I~~~c~~~GiD~~r~~IPV~PaaHY~mGGI~vD~~GrTsi~gLYAiGEvA~TGlHGANRLA-SNSLL  380 (518)
T COG0029         307 ---FFE--RRFPTIYAACLKAGIDPTREPIPVVPAAHYTMGGIAVDANGRTSIPGLYAIGEVACTGLHGANRLA-SNSLL  380 (518)
T ss_pred             ---hhh--hhCcHHHHHHHHcCCCcccCccCccchhheecccEEECCCCcccCcccEEeeeecccccccchhhh-hhhHH
Confidence               000  11221 1112234544443322111111 2359999999999999999999999997665545544 33555


Q ss_pred             HHHHHHHHHHHHHhcC
Q 011351          362 HARQSAQHCIKALLSA  377 (488)
Q Consensus       362 ~A~~~g~~~a~~i~~~  377 (488)
                      .+...|+.+|++|.+.
T Consensus       381 E~vV~g~~aA~~i~~~  396 (518)
T COG0029         381 ECLVFGKRAAEDIAGR  396 (518)
T ss_pred             HHHHHHHHHHHHhhcc
Confidence            6888899999999864

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.21  E-value=4.3e-11  Score=113.84  Aligned_cols=122  Identities=25%  Similarity=0.288  Sum_probs=77.4

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-------CCCCCCCc-----cccCCCC-----------
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP-------YERPALTK-----GYLFPLD-----------  105 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~-------~~~~~l~~-----~~~~~~~-----------  105 (488)
                      ++.++|+|||||+|||+||..+.+.|.   +|+|||+.+...       -.|+...+     .|+....           
T Consensus         1 ~~~~dviIIGgGpAGlMaA~~aa~~G~---~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~   77 (408)
T COG2081           1 MERFDVIIIGGGPAGLMAAISAAKAGR---RVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALA   77 (408)
T ss_pred             CCcceEEEECCCHHHHHHHHHHhhcCC---EEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHH
Confidence            356899999999999999999999987   899999998431       01111100     0000000           


Q ss_pred             -CCCCCC------CCcccc---cCC---------CCCCCCHhHHHHCCCeEEeCCcEEEEeCCC--cEEEeCCCcEEEec
Q 011351          106 -KKPARL------PGFHTC---VGS---------GGERQTPEWYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYG  164 (488)
Q Consensus       106 -~~~~~~------~~~~~~---~~~---------~~~~~~~~~~~~~~i~~~~~~~v~~id~~~--~~v~~~~g~~i~yd  164 (488)
                       ..+.++      .+....   .|.         ...+.....+++.|++++++++|.+++.++  ..+.+.+|+++.+|
T Consensus        78 ~ft~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d  157 (408)
T COG2081          78 RFTPEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCD  157 (408)
T ss_pred             hCCHHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEcc
Confidence             000000      000000   000         001112234567899999999999999874  68889999889999


Q ss_pred             cEEeccCCC
Q 011351          165 SLIVATGCT  173 (488)
Q Consensus       165 ~lVlAtG~~  173 (488)
                      .||||||..
T Consensus       158 ~lilAtGG~  166 (408)
T COG2081         158 SLILATGGK  166 (408)
T ss_pred             EEEEecCCc
Confidence            999999954

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=99.20  E-value=2e-09  Score=105.95  Aligned_cols=126  Identities=20%  Similarity=0.292  Sum_probs=88.7

Q ss_pred             ccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCC--cEEEcCEEEEeecCccCChhhhhc------
Q 011351          244 QRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSPFERV------  315 (488)
Q Consensus       244 ~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g--~~i~~D~vi~a~G~~p~~~~~~~~------  315 (488)
                      |...+..+.+.+.+.+++.|++++.+..|.++... ++++..+.+.++  ..+.+|.+|+|+|..-...++++.      
T Consensus       258 PSv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~-~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~l~~i~Ep  336 (419)
T TIGR03378       258 PSLLGIRLEEALKHRFEQLGGVMLPGDRVLRAEFE-GNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAEFDKIYEP  336 (419)
T ss_pred             CCCcHHHHHHHHHHHHHHCCCEEEECcEEEEEEee-CCeEEEEEecCCccceEECCEEEEccCCCcCHHHHhhcCceeee
Confidence            34445677888899999999999999999998854 566667776666  479999999999988322443321      


Q ss_pred             --CCcc--------------------cCCCEEeCCCCCC-----CCCCEEEEceecccCCccCCcccccccHHHHHHHHH
Q 011351          316 --GLNS--------------------SVGGIQVDGQFRT-----RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQ  368 (488)
Q Consensus       316 --gl~~--------------------~~g~i~vd~~~~t-----~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~  368 (488)
                        ++++                    ..=||.+|+++|.     ..+|+||+|-+.+..++..-...    -..|...|.
T Consensus       337 if~L~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL~G~d~~~~gcG----~GVai~Ta~  412 (419)
T TIGR03378       337 IFGLDVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVLGGYDPIFEGCG----SGVAVSTAL  412 (419)
T ss_pred             ccCCCcCCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechhhcCCChHhcCCC----chhHHHHHH
Confidence              2221                    1136889999983     38999999999988775432211    124666777


Q ss_pred             HHHHHH
Q 011351          369 HCIKAL  374 (488)
Q Consensus       369 ~~a~~i  374 (488)
                      .+|++|
T Consensus       413 ~aa~~i  418 (419)
T TIGR03378       413 HAAEQI  418 (419)
T ss_pred             HHHHhh
Confidence            777765

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK08401 L-aspartate oxidase; Provisional

Probab=99.11  E-value=3.3e-10  Score=115.80  Aligned_cols=34  Identities=29%  Similarity=0.366  Sum_probs=31.2

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      ++||||||||.||++||..+++.|.   +|+||||.+
T Consensus         1 ~~DVvVVGaG~AGl~AAi~aae~G~---~V~liek~~   34 (466)
T PRK08401          1 MMKVGIVGGGLAGLTAAISLAKKGF---DVTIIGPGI   34 (466)
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCC---eEEEEeCCC
Confidence            3799999999999999999999887   899999975

>PRK07804 L-aspartate oxidase; Provisional

Probab=99.05  E-value=1.8e-09  Score=112.29  Aligned_cols=37  Identities=32%  Similarity=0.405  Sum_probs=33.2

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      ....||||||+|.||++||.++++.|.   +|+||||...
T Consensus        14 ~~~~DVlVIG~G~AGl~AAi~aae~G~---~VilleK~~~   50 (541)
T PRK07804         14 RDAADVVVVGSGVAGLTAALAARRAGR---RVLVVTKAAL   50 (541)
T ss_pred             ccccCEEEECccHHHHHHHHHHHHcCC---eEEEEEccCC
Confidence            446899999999999999999999876   8999999764

>PRK06175 L-aspartate oxidase; Provisional

Probab=99.04  E-value=1.1e-09  Score=110.86  Aligned_cols=55  Identities=22%  Similarity=0.290  Sum_probs=37.6

Q ss_pred             cCCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 011351          320 SVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  375 (488)
Q Consensus       320 ~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~  375 (488)
                      ..|||.||.+.||++||+||+|.|+.....-.++.. -.+...+...|+.+++++.
T Consensus       330 t~GGi~vd~~~~t~i~gLYAaGE~a~~g~hG~nrl~-gnsl~~~lvfGr~Ag~~a~  384 (433)
T PRK06175        330 FMGGIKVDLNSKTSMKNLYAFGEVSCTGVHGANRLA-SNSLLEGLVFSKRGAEKIN  384 (433)
T ss_pred             ecCCEEECCCccccCCCeEecccccccCCCccccch-hHHHHHHHHHHHHHHHHHH
Confidence            469999999999999999999999742111111111 2245556777777777764

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=99.00  E-value=7.2e-09  Score=102.02  Aligned_cols=68  Identities=21%  Similarity=0.346  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcE-EEcCEEEEeecCccCChhhhhcCCcc
Q 011351          250 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST-IDADTIVIGIGAKPTVSPFERVGLNS  319 (488)
Q Consensus       250 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~-i~~D~vi~a~G~~p~~~~~~~~gl~~  319 (488)
                      ++...+.+.++++|++++++++|+.++..++| +..+.+.+|++ ++|+.||.|.|.... .+++.+|+..
T Consensus       154 ~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg-~~~~~~~~g~~~~~ak~Vin~AGl~Ad-~la~~~g~~~  222 (429)
T COG0579         154 ELTRALAEEAQANGVELRLNTEVTGIEKQSDG-VFVLNTSNGEETLEAKFVINAAGLYAD-PLAQMAGIPE  222 (429)
T ss_pred             HHHHHHHHHHHHcCCEEEecCeeeEEEEeCCc-eEEEEecCCcEEEEeeEEEECCchhHH-HHHHHhCCCc
Confidence            45667777888889999999999999987665 55788888877 999999999998875 6677776655

>TIGR00551 nadB L-aspartate oxidase

Probab=98.98  E-value=5.1e-09  Score=107.81  Aligned_cols=56  Identities=30%  Similarity=0.415  Sum_probs=38.3

Q ss_pred             cCCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 011351          320 SVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  376 (488)
Q Consensus       320 ~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~  376 (488)
                      ..|||.||.+.+|++||+||+|+|+.....-.++.. -.+...|...|+.+++++..
T Consensus       332 t~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~-g~sl~~~~v~G~~Ag~~aa~  387 (488)
T TIGR00551       332 TCGGISVDDHGRTTVPGLYAIGEVACTGLHGANRLA-SNSLLECLVFGWSAAEDISR  387 (488)
T ss_pred             ecCCEEECCCCcccCCCEEECccccccccCcccccc-hhHHHHHHHHHHHHHHHHHh
Confidence            358999999999999999999999742211111111 22455677777777777753

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=98.96  E-value=1.1e-08  Score=94.38  Aligned_cols=107  Identities=19%  Similarity=0.275  Sum_probs=76.3

Q ss_pred             cccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcE--EEcCEEEEeecCccCChhhh-------
Q 011351          243 LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST--IDADTIVIGIGAKPTVSPFE-------  313 (488)
Q Consensus       243 l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~--i~~D~vi~a~G~~p~~~~~~-------  313 (488)
                      -|..++-.+.+.+...++..|.-+..+-.|...+- .+++|+.|.+.+...  +.+|..|+|+|.--...+..       
T Consensus       252 PPSllGiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~-~~~~v~~i~trn~~diP~~a~~~VLAsGsffskGLvae~d~I~E  330 (421)
T COG3075         252 PPSLLGIRLHNQLQRQFEQLGGLWMPGDEVKKATC-KGGRVTEIYTRNHADIPLRADFYVLASGSFFSKGLVAERDKIYE  330 (421)
T ss_pred             CcchhhhhHHHHHHHHHHHcCceEecCCceeeeee-eCCeEEEEEecccccCCCChhHeeeeccccccccchhhhhhhhc
Confidence            33344556788899999999999999999999884 478888898888765  56999999999644322211       


Q ss_pred             ---hcCCc------------------ccCCCEEeCCCCCCC-----CCCEEEEceecccCCcc
Q 011351          314 ---RVGLN------------------SSVGGIQVDGQFRTR-----MPGIFAIGDVAAFPLKM  350 (488)
Q Consensus       314 ---~~gl~------------------~~~g~i~vd~~~~t~-----~~~Ifa~GD~a~~~~~~  350 (488)
                         ++.+.                  ...=|+.+|+++|.+     ..|+||+|.+.+..++.
T Consensus       331 PIf~ldi~~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGavlgGfdpi  393 (421)
T COG3075         331 PIFDLDILQTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVLGGFDPI  393 (421)
T ss_pred             chhhcccccCcchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHHhcCCcHH
Confidence               11110                  011368888888863     67999999999877654

>PRK08071 L-aspartate oxidase; Provisional

Probab=98.94  E-value=9.1e-10  Score=113.64  Aligned_cols=55  Identities=24%  Similarity=0.401  Sum_probs=38.6

Q ss_pred             CCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 011351          321 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  376 (488)
Q Consensus       321 ~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~  376 (488)
                      .|||.||.+.+|++|++||+|+|+.......++.. -.+...+...|+.+++++..
T Consensus       332 ~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~-g~sl~~~~v~G~~Ag~~aa~  386 (510)
T PRK08071        332 MGGVKTNLDGETSIPGLYAIGEVACTGVHGANRLA-SNSLLEGLVFGKRAAEHILT  386 (510)
T ss_pred             cCCEEECCCCcccCCCeEEcccccccccCCCcccc-hHHHHHHHHHHHHHHHHHHh
Confidence            58999999999999999999999852211111111 22455677778888888754

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=98.94  E-value=5.5e-10  Score=110.93  Aligned_cols=120  Identities=27%  Similarity=0.361  Sum_probs=59.7

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-------CCCCCCCc------cccCCCCCCCCCC-------
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP-------YERPALTK------GYLFPLDKKPARL-------  111 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~-------~~~~~l~~------~~~~~~~~~~~~~-------  111 (488)
                      +||+|||||+|||+||..+++.|.   +|+|+|+++...       -.|..++.      .|..........+       
T Consensus         1 ydviIIGgGaAGl~aA~~aa~~g~---~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f   77 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAEKGA---RVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRF   77 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHHTT-----EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCC---CEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcC
Confidence            689999999999999999999987   899999998431       00111110      0111000000000       


Q ss_pred             -----------CCcccccCCC-----CCCC-------CHhHHHHCCCeEEeCCcEEEEeCCC---cEEEeCCCcEEEecc
Q 011351          112 -----------PGFHTCVGSG-----GERQ-------TPEWYKEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGS  165 (488)
Q Consensus       112 -----------~~~~~~~~~~-----~~~~-------~~~~~~~~~i~~~~~~~v~~id~~~---~~v~~~~g~~i~yd~  165 (488)
                                 .+........     ...+       +...+++.+++++++++|.+|..++   ..|.++++..+.+|+
T Consensus        78 ~~~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~  157 (409)
T PF03486_consen   78 SPEDLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADA  157 (409)
T ss_dssp             -HHHHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESE
T ss_pred             CHHHHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCE
Confidence                       0000000000     0001       1223456799999999999997644   357776778899999


Q ss_pred             EEeccCCCC
Q 011351          166 LIVATGCTA  174 (488)
Q Consensus       166 lVlAtG~~~  174 (488)
                      ||||||...
T Consensus       158 vILAtGG~S  166 (409)
T PF03486_consen  158 VILATGGKS  166 (409)
T ss_dssp             EEE----SS
T ss_pred             EEEecCCCC
Confidence            999999865

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PRK08275 putative oxidoreductase; Provisional

Probab=98.92  E-value=1.3e-08  Score=106.26  Aligned_cols=38  Identities=24%  Similarity=0.348  Sum_probs=32.6

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      ..+||||||||.||++||.++++.+. ..+|+||||.+.
T Consensus         8 ~~~DVlVIG~G~AGl~AAi~aa~~g~-g~~VilveK~~~   45 (554)
T PRK08275          8 VETDILVIGGGTAGPMAAIKAKERNP-ALRVLLLEKANV   45 (554)
T ss_pred             EecCEEEECcCHHHHHHHHHHHHhCC-CCeEEEEeCCCC
Confidence            45799999999999999999998752 348999999864

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.92  E-value=2.1e-07  Score=97.34  Aligned_cols=35  Identities=26%  Similarity=0.445  Sum_probs=32.0

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      ...||||||+|.||++||.++++.|.   +|+||||.+
T Consensus         4 ~~~DVvVVG~G~AGl~AAl~Aae~G~---~V~lveK~~   38 (566)
T PRK06452          4 IEYDAVVIGGGLAGLMSAHEIASAGF---KVAVISKVF   38 (566)
T ss_pred             ccCcEEEECccHHHHHHHHHHHHCCC---cEEEEEccC
Confidence            46799999999999999999999876   899999975

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=98.91  E-value=1.6e-08  Score=105.93  Aligned_cols=36  Identities=25%  Similarity=0.329  Sum_probs=31.5

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      ..||||||||.||++||..+++.+. ..+|+|+||..
T Consensus         4 ~~DVlVVG~G~AGl~AAi~Aa~~g~-g~~V~lleK~~   39 (582)
T PRK09231          4 QADLAIIGAGGAGLRAAIAAAEANP-NLKIALISKVY   39 (582)
T ss_pred             eeeEEEECccHHHHHHHHHHHHhCC-CCcEEEEEccC
Confidence            5799999999999999999998763 34899999985

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=98.91  E-value=7.3e-09  Score=108.32  Aligned_cols=37  Identities=22%  Similarity=0.234  Sum_probs=31.7

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      ..||+|||||.||++||..+++.+. ..+|+|+||...
T Consensus         3 ~~DVlVIG~G~AGl~AAl~aa~~g~-g~~V~lveK~~~   39 (580)
T TIGR01176         3 QHDIAVIGAGGAGLRAAIAAAEANP-HLDVALISKVYP   39 (580)
T ss_pred             ceeEEEECccHHHHHHHHHHHHhCC-CCcEEEEEccCC
Confidence            4699999999999999999998753 348999999763

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK09077 L-aspartate oxidase; Provisional

Probab=98.89  E-value=1.3e-08  Score=105.88  Aligned_cols=56  Identities=29%  Similarity=0.394  Sum_probs=38.4

Q ss_pred             cCCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 011351          320 SVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  376 (488)
Q Consensus       320 ~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~  376 (488)
                      ..|||.||.+.+|++|++||+|+|+.....-.++.. -.+...|...|+.+++++..
T Consensus       352 t~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~-gnsl~~~~vfG~~Ag~~aa~  407 (536)
T PRK09077        352 TCGGVMVDLHGRTDLDGLYAIGEVSYTGLHGANRMA-SNSLLECLVYGRSAAEDILS  407 (536)
T ss_pred             ecCCeeECCCCccccCCEEecccccccccCCCccch-hhhHHHHHHHHHHHHHHHHH
Confidence            468999999999999999999999842211111211 22455567777777777754

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.89  E-value=5.8e-09  Score=109.43  Aligned_cols=38  Identities=29%  Similarity=0.274  Sum_probs=32.5

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      ...||||||||.||++||.++++.+. ..+|+|+||...
T Consensus         2 ~~~DVlVIG~G~AGl~AAi~aa~~g~-g~~V~vleK~~~   39 (575)
T PRK05945          2 LEHDVVIVGGGLAGCRAALEIKRLDP-SLDVAVVAKTHP   39 (575)
T ss_pred             CcccEEEECccHHHHHHHHHHHHhcC-CCcEEEEeccCC
Confidence            35799999999999999999998763 348999999863

>PRK07395 L-aspartate oxidase; Provisional

Probab=98.88  E-value=1.4e-08  Score=105.58  Aligned_cols=55  Identities=24%  Similarity=0.323  Sum_probs=37.5

Q ss_pred             cCCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 011351          320 SVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  375 (488)
Q Consensus       320 ~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~  375 (488)
                      ..|||.||.+.+|++|++||+|+|+.......++.. -.+...+..-|+.+++.+.
T Consensus       346 ~~GGi~vd~~~~t~I~GLyAaGE~a~~G~hGanRL~-gnsl~e~lvfG~~a~~~~~  400 (553)
T PRK07395        346 WMGGVVTDLNNQTSIPGLYAVGETASTGVHGANRLA-SNSLLECLVFAAQLAQLEL  400 (553)
T ss_pred             cCCCeeECCCCcccCCCEEECccccccCCCcccchH-HHHHHHHHHHHHHHHHHHH
Confidence            369999999999999999999999853222222222 1234456666777777664

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=98.85  E-value=5e-08  Score=102.52  Aligned_cols=33  Identities=33%  Similarity=0.357  Sum_probs=30.4

Q ss_pred             eEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      ||||||||.||++||..+++.|.   +|+||||.+.
T Consensus         1 DVlVVG~G~AGl~AA~~aae~G~---~V~lleK~~~   33 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAKAGL---NTAVISKVYP   33 (566)
T ss_pred             CEEEECccHHHHHHHHHHHHCCC---cEEEEeccCC
Confidence            69999999999999999999887   8999999763

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=98.84  E-value=3.9e-08  Score=103.68  Aligned_cols=50  Identities=26%  Similarity=0.283  Sum_probs=38.5

Q ss_pred             cccccccccc----cccCCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           35 FQRRGFVVAY----SSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        35 ~~~~~~~~~~----~~~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      ...||++..-    +.......||||||+|.||++||.++++.|.   +|+||||..
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~DVlVIG~G~AGl~AAl~Aae~G~---~VilveK~~   83 (635)
T PLN00128         30 ALSRFFSTGGGRSSYTIVDHTYDAVVVGAGGAGLRAAIGLSEHGF---NTACITKLF   83 (635)
T ss_pred             chhhhcccccccccCcceeeecCEEEECccHHHHHHHHHHHhcCC---cEEEEEcCC
Confidence            4556666532    1112345799999999999999999999886   899999986

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.84  E-value=2.3e-08  Score=104.99  Aligned_cols=40  Identities=30%  Similarity=0.205  Sum_probs=32.9

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      ..+.||||||||.||++||.++++.|..+.+|+|+||...
T Consensus         3 ~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~   42 (577)
T PRK06069          3 VLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQP   42 (577)
T ss_pred             ceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccC
Confidence            3457999999999999999999998721138999999764

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=98.84  E-value=4.2e-09  Score=110.48  Aligned_cols=103  Identities=20%  Similarity=0.297  Sum_probs=76.6

Q ss_pred             hcCCeEEEECCCH--HHHHHHHHHHhCCCcEEEEecCCcCcccc-------------cCHHHHHHHHHHHHHcCcEEEcC
Q 011351          205 EKAKKVVVVGGGY--IGMEVAAAAVGWKLDTTIIFPENHLLQRL-------------FTPSLAQRYEQLYQQNGVKFVKG  269 (488)
Q Consensus       205 ~~~~~vvVvG~G~--~g~e~A~~l~~~g~~v~lv~~~~~~l~~~-------------~~~~~~~~~~~~l~~~GV~v~~~  269 (488)
                      ...+++.|+|++.  ++.+++..+...+.+++++.+..+++...             ....+...+.+.+++.|++++++
T Consensus       155 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~~Gv~i~~~  234 (574)
T PRK12842        155 PPLKTITFIGMMFNSSNADLKHFFNATRSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKSALDLGIPILTG  234 (574)
T ss_pred             CCcccccccceecccchHHHHHHHhhccchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHHHHhCCCEEEeC
Confidence            4567888999988  89999999988888887765554444321             12346667778888999999999


Q ss_pred             CeEEEEEeCCCCcEEEEEeCC--Cc-EEEcC-EEEEeecCccC
Q 011351          270 ASIKNLEAGSDGRVAAVKLED--GS-TIDAD-TIVIGIGAKPT  308 (488)
Q Consensus       270 ~~v~~i~~~~~~~v~~v~l~~--g~-~i~~D-~vi~a~G~~p~  308 (488)
                      +.++++..+ ++++.+|...+  ++ .+.++ .||+|+|..++
T Consensus       235 ~~v~~l~~~-~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~  276 (574)
T PRK12842        235 TPARELLTE-GGRVVGARVIDAGGERRITARRGVVLACGGFSH  276 (574)
T ss_pred             CEEEEEEee-CCEEEEEEEEcCCceEEEEeCCEEEEcCCCccc
Confidence            999999864 57777776643  33 47786 79999997764

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.83  E-value=9.3e-08  Score=100.47  Aligned_cols=35  Identities=29%  Similarity=0.283  Sum_probs=30.7

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      ....||||||||.||++||.++++. .   +|+|+||..
T Consensus         3 ~~~~DVlVIG~G~AGl~AAl~aa~~-~---~VilleK~~   37 (583)
T PRK08205          3 QHRYDVVIVGAGGAGMRAAIEAGPR-A---RTAVLTKLY   37 (583)
T ss_pred             ceeccEEEECccHHHHHHHHHHHhC-C---CEEEEeCCC
Confidence            3467999999999999999999875 4   899999975

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.83  E-value=1.5e-08  Score=111.59  Aligned_cols=36  Identities=31%  Similarity=0.510  Sum_probs=32.3

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      ..+||||||||.||++||.++++.|.   +|+|+||...
T Consensus        12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~---~V~lleK~~~   47 (897)
T PRK13800         12 LDCDVLVIGGGTAGTMAALTAAEHGA---NVLLLEKAHV   47 (897)
T ss_pred             eecCEEEECcCHHHHHHHHHHHHCCC---eEEEEecccc
Confidence            45799999999999999999999876   8999999763

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.82  E-value=6.4e-09  Score=109.88  Aligned_cols=35  Identities=26%  Similarity=0.348  Sum_probs=31.4

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      ...||||||||.||++||.++++.|.   +|+||||..
T Consensus        34 ~~~DVlVVG~G~AGl~AAi~Aae~G~---~VilieK~~   68 (640)
T PRK07573         34 RKFDVIVVGTGLAGASAAATLGELGY---NVKVFCYQD   68 (640)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCC---cEEEEecCC
Confidence            45799999999999999999999887   899999754

>PLN02815 L-aspartate oxidase

Probab=98.82  E-value=2.2e-07  Score=97.24  Aligned_cols=35  Identities=26%  Similarity=0.395  Sum_probs=30.9

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      ...||||||+|.|||+||.++++.|    +|+|+||.+.
T Consensus        28 ~~~DVlVVG~G~AGl~AAl~Aae~G----~VvlleK~~~   62 (594)
T PLN02815         28 KYFDFLVIGSGIAGLRYALEVAEYG----TVAIITKDEP   62 (594)
T ss_pred             cccCEEEECccHHHHHHHHHHhhCC----CEEEEECCCC
Confidence            3579999999999999999999875    5999999773

>PRK06847 hypothetical protein; Provisional

Probab=98.81  E-value=1.8e-08  Score=100.57  Aligned_cols=123  Identities=19%  Similarity=0.217  Sum_probs=73.8

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC---------------CCCcc------------ccC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP---------------ALTKG------------YLF  102 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~---------------~l~~~------------~~~  102 (488)
                      ++++|+|||||+||+++|..|++.|+   +|+|+|+.+.......               .+...            +..
T Consensus         3 ~~~~V~IVGaG~aGl~~A~~L~~~g~---~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~   79 (375)
T PRK06847          3 AVKKVLIVGGGIGGLSAAIALRRAGI---AVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFD   79 (375)
T ss_pred             CcceEEEECCCHHHHHHHHHHHhCCC---CEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEEC
Confidence            46799999999999999999999988   8999999864211000               00000            000


Q ss_pred             CCCCCCCCCC--C-----cc---cccCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEecc
Q 011351          103 PLDKKPARLP--G-----FH---TCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVAT  170 (488)
Q Consensus       103 ~~~~~~~~~~--~-----~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAt  170 (488)
                      ........++  .     +.   ..........+.+.+.+.+++++.+++|++++.+..  .+.+.+|+++.+|.||.|+
T Consensus        80 ~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~Ad  159 (375)
T PRK06847         80 PDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGAD  159 (375)
T ss_pred             CCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECc
Confidence            0000000000  0     00   000000001122333456899999999999876543  5667788889999999999


Q ss_pred             CCCCC
Q 011351          171 GCTAS  175 (488)
Q Consensus       171 G~~~~  175 (488)
                      |..+.
T Consensus       160 G~~s~  164 (375)
T PRK06847        160 GLYSK  164 (375)
T ss_pred             CCCcc
Confidence            98653

>PF14759 Reductase_C: Reductase C-terminal; PDB: 3FG2_P 3LXD_A 2YVG_A 2GR1_A 2GQW_A 2GR3_A 2YVF_A 1F3P_A 2GR0_A 2GR2_A

Probab=98.79  E-value=6e-08  Score=73.94  Aligned_cols=77  Identities=22%  Similarity=0.362  Sum_probs=62.2

Q ss_pred             ceeEeccccCCCCcceeeEEeeCCC--CcEEEEccCC-CcEEEEEEECCEEEEEEeecCChHHhhHHHHHHhcCCCCChh
Q 011351          387 YFYSRVFEYEGSPRKVWWQFFGDNV--GETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKA  463 (488)
Q Consensus       387 ~~~~~~~~~~g~~~~~~~~~~g~~~--~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  463 (488)
                      ||||++|+..       +|++|.+.  .+++..++.+ .++..+|+++|+++|++. +|.+.++..++++|+.+..++.+
T Consensus         1 ~FWSdQ~~~~-------iq~~G~~~~~~~~v~rg~~~~~~~~~~y~~~g~lva~~~-vn~~~~~~~~rrli~~~~~~~~~   72 (85)
T PF14759_consen    1 WFWSDQYGVR-------IQIAGLPGGADEVVVRGDPESGKFVAFYLRDGRLVAAVS-VNRPRDLRAARRLIAAGARVDPA   72 (85)
T ss_dssp             EEEEEETTEE-------EEEEE-STTSSEEEEEEETTTTEEEEEEEETTEEEEEEE-ES-HHHHHHHHHHHHTT-B--HH
T ss_pred             CeecccCCCe-------EEEEECCCCCCEEEEEccCCCCcEEEEEEcCCEEEEEEe-cCCHHHHHHHHHHHHCCCCcCHH
Confidence            7999999865       99999764  3677888876 789999999999999985 89999999999999999999999


Q ss_pred             hhcCCCcH
Q 011351          464 KLQQASSV  471 (488)
Q Consensus       464 ~~~~~~~~  471 (488)
                      .|.++..-
T Consensus        73 ~l~d~~~~   80 (85)
T PF14759_consen   73 RLADPSVD   80 (85)
T ss_dssp             HHHSTTSH
T ss_pred             HhcCCCCC
Confidence            88777543

...

>PRK07512 L-aspartate oxidase; Provisional

Probab=98.78  E-value=2.4e-07  Score=95.86  Aligned_cols=34  Identities=29%  Similarity=0.280  Sum_probs=29.5

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      ...||||||+|.||++||.+++  +.   +|+||||.+.
T Consensus         8 ~~~DVlVIG~G~AGl~AAl~Aa--~~---~V~lleK~~~   41 (513)
T PRK07512          8 LTGRPVIVGGGLAGLMAALKLA--PR---PVVVLSPAPL   41 (513)
T ss_pred             CcCCEEEECchHHHHHHHHHhC--cC---CEEEEECCCC
Confidence            4689999999999999999996  33   8999999874

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=98.77  E-value=1.1e-07  Score=100.33  Aligned_cols=35  Identities=31%  Similarity=0.431  Sum_probs=31.6

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHc--CCCCCcEEEEcCCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEH--GMADGRLCIVSKEAY   88 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~--g~~~~~V~lie~~~~   88 (488)
                      ..||||||||.||++||.++++.  |.   +|+||||.+.
T Consensus        11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~---~V~lieK~~~   47 (608)
T PRK06854         11 DTDILIIGGGMAGCGAAFEAKEWAPDL---KVLIVEKANI   47 (608)
T ss_pred             EeCEEEECcCHHHHHHHHHHHHhCCCC---eEEEEECCCc
Confidence            57999999999999999999997  65   8999999864

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=98.77  E-value=6.1e-08  Score=95.79  Aligned_cols=67  Identities=30%  Similarity=0.489  Sum_probs=52.6

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcCC
Q 011351          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL  317 (488)
Q Consensus       248 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl  317 (488)
                      +..+.+.+.+.+++.|++++.+++|+++..+ ++.+.+|.+.+|+ +.+|.||+|+|.... .++...+.
T Consensus       146 ~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~v~gv~~~~g~-i~ad~vV~a~G~~s~-~l~~~~~~  212 (358)
T PF01266_consen  146 PRRLIQALAAEAQRAGVEIRTGTEVTSIDVD-GGRVTGVRTSDGE-IRADRVVLAAGAWSP-QLLPLLGL  212 (358)
T ss_dssp             HHHHHHHHHHHHHHTT-EEEESEEEEEEEEE-TTEEEEEEETTEE-EEECEEEE--GGGHH-HHHHTTTT
T ss_pred             ccchhhhhHHHHHHhhhhccccccccchhhc-ccccccccccccc-cccceeEecccccce-eeeecccc
Confidence            4577888888899999999999999999965 5667679999998 999999999998664 45666554

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.76  E-value=4.3e-08  Score=103.00  Aligned_cols=35  Identities=26%  Similarity=0.407  Sum_probs=31.8

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      ...||||||||.||++||.++++.|.   +|+||||..
T Consensus        11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~---~V~vleK~~   45 (591)
T PRK07057         11 RKFDVVIVGAGGSGMRASLQLARAGL---SVAVLSKVF   45 (591)
T ss_pred             ccCCEEEECccHHHHHHHHHHHHCCC---cEEEEeccC
Confidence            45799999999999999999999876   899999974

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.76  E-value=4e-08  Score=102.55  Aligned_cols=34  Identities=35%  Similarity=0.438  Sum_probs=30.6

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      ...||||||+|.||++||.++ +.|.   +|+|+||.+
T Consensus         6 ~~~DVlVVG~G~AGl~AAi~A-~~G~---~VilleK~~   39 (543)
T PRK06263          6 MITDVLIIGSGGAGARAAIEA-ERGK---NVVIVSKGL   39 (543)
T ss_pred             eccCEEEECccHHHHHHHHHH-hcCC---CEEEEEccC
Confidence            457999999999999999999 8776   899999975

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=98.75  E-value=3.4e-08  Score=103.29  Aligned_cols=33  Identities=33%  Similarity=0.557  Sum_probs=29.2

Q ss_pred             eEEEEcCchHHHHHHHHHH----HcCCCCCcEEEEcCCCC
Q 011351           53 EFVIVGGGNAAGYAARTFV----EHGMADGRLCIVSKEAY   88 (488)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~----~~g~~~~~V~lie~~~~   88 (488)
                      ||||||||.||++||.+++    +.|.   +|+|+||...
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~---~VilieK~~~   37 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKGL---KIVLVEKANL   37 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCCC---eEEEEEccCC
Confidence            6999999999999999998    5565   8999999764

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=98.72  E-value=1.1e-07  Score=95.54  Aligned_cols=66  Identities=23%  Similarity=0.319  Sum_probs=50.7

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcCC
Q 011351          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL  317 (488)
Q Consensus       248 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl  317 (488)
                      ...+.+.+.+.+++.|+++++++.|.+++..+ +.+ .|.+.+| ++.+|.||+|+|.... .+++.+++
T Consensus       148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~-~~~-~V~~~~g-~i~ad~vV~A~G~~s~-~l~~~~g~  213 (393)
T PRK11728        148 YRAVAEAMAELIQARGGEIRLGAEVTALDEHA-NGV-VVRTTQG-EYEARTLINCAGLMSD-RLAKMAGL  213 (393)
T ss_pred             HHHHHHHHHHHHHhCCCEEEcCCEEEEEEecC-CeE-EEEECCC-EEEeCEEEECCCcchH-HHHHHhCC
Confidence            35677788888899999999999999998643 333 5667766 6999999999998764 45555554

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.72  E-value=1.1e-07  Score=100.02  Aligned_cols=36  Identities=25%  Similarity=0.324  Sum_probs=32.1

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      ++.||||||+|.||++||.++++.|.   +|+||||.+.
T Consensus         2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~---~V~lieK~~~   37 (589)
T PRK08641          2 AKGKVIVVGGGLAGLMATIKAAEAGV---HVDLFSLVPV   37 (589)
T ss_pred             CCccEEEECchHHHHHHHHHHHHcCC---cEEEEEccCC
Confidence            45699999999999999999999887   8999998653

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=98.72  E-value=8.3e-07  Score=90.49  Aligned_cols=90  Identities=13%  Similarity=0.156  Sum_probs=59.5

Q ss_pred             CHHHHHHHHHHHhCCCcEEEEecCCc---CcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeC-CC--CcEEEEEeC
Q 011351          216 GYIGMEVAAAAVGWKLDTTIIFPENH---LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG-SD--GRVAAVKLE  289 (488)
Q Consensus       216 G~~g~e~A~~l~~~g~~v~lv~~~~~---~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~-~~--~~v~~v~l~  289 (488)
                      -.++.|+...+.+.-.++.-+.....   .-..+ .+.+...+.+.|+++||+|+++++|+++..+ ++  ++++++...
T Consensus       191 whSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynq-yeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~  269 (576)
T PRK13977        191 WHSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQ-YESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLT  269 (576)
T ss_pred             hhHHHHHHHHHHHHHHhhccCCccccccCCCCCc-hhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEE
Confidence            45788888888655222111111111   11111 2578888999999999999999999999864 23  567788774


Q ss_pred             -CCc-----EEEcCEEEEeecCc
Q 011351          290 -DGS-----TIDADTIVIGIGAK  306 (488)
Q Consensus       290 -~g~-----~i~~D~vi~a~G~~  306 (488)
                       +|+     ..+.|.||+++|.-
T Consensus       270 ~~~~~~~I~l~~~DlVivTnGs~  292 (576)
T PRK13977        270 RNGKEETIDLTEDDLVFVTNGSI  292 (576)
T ss_pred             eCCceeEEEecCCCEEEEeCCcC
Confidence             332     35789999999964

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=98.70  E-value=7.3e-08  Score=102.17  Aligned_cols=36  Identities=17%  Similarity=0.183  Sum_probs=32.4

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      ....||||||||.||++||.++++.|.   +|+||||.+
T Consensus         3 ~~~~DVlVIG~G~AGl~AAi~Aae~G~---~VivleK~~   38 (657)
T PRK08626          3 IIYTDALVIGAGLAGLRVAIAAAQRGL---DTIVLSLVP   38 (657)
T ss_pred             ceeccEEEECccHHHHHHHHHHHHcCC---CEEEEeCCC
Confidence            446899999999999999999999887   899999865

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.69  E-value=1.7e-08  Score=105.48  Aligned_cols=108  Identities=19%  Similarity=0.208  Sum_probs=76.3

Q ss_pred             cCCeEEEECCCHHHHHHHHH-------HHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeC
Q 011351          206 KAKKVVVVGGGYIGMEVAAA-------AVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG  278 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~-------l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~  278 (488)
                      .++.++++|++.++++++..       +.+++.+|+++...+..+. .++..+...+.+.+++.|+++++++.++++..+
T Consensus       159 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~  237 (557)
T PRK07843        159 VPLNMVVMQQDYVWLNLLKRHPRGVLRALKVGARTLWAKATGKNLL-GMGQALAAGLRIGLQRAGVPVLLNTPLTDLYVE  237 (557)
T ss_pred             ccccccccHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhccCCCcc-cCcHHHHHHHHHHHHcCCCEEEeCCEEEEEEEe
Confidence            45678899999999998764       5555666666544433332 256677888888899999999999999999864


Q ss_pred             CCCcEEEEEeC-CCc--EEEcC-EEEEee-cCccCChhhhhc
Q 011351          279 SDGRVAAVKLE-DGS--TIDAD-TIVIGI-GAKPTVSPFERV  315 (488)
Q Consensus       279 ~~~~v~~v~l~-~g~--~i~~D-~vi~a~-G~~p~~~~~~~~  315 (488)
                       ++++++|... +++  .+.++ .||+|+ |+.+|.++++..
T Consensus       238 -~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m~~~~  278 (557)
T PRK07843        238 -DGRVTGVHAAESGEPQLIRARRGVILASGGFEHNEQMRAKY  278 (557)
T ss_pred             -CCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHHHHHh
Confidence             5677776653 443  47785 588855 566666655543

>PLN02463 lycopene beta cyclase

Probab=98.68  E-value=6.8e-08  Score=97.52  Aligned_cols=124  Identities=18%  Similarity=0.258  Sum_probs=73.5

Q ss_pred             CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCC-CCcccc--CCC-CCCCCCCCC--------cc
Q 011351           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA-LTKGYL--FPL-DKKPARLPG--------FH  115 (488)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~-l~~~~~--~~~-~~~~~~~~~--------~~  115 (488)
                      ....+||+|||||+||+++|..|++.|+   +|+|||+.+...+.+.. .....+  ... +......+.        ..
T Consensus        25 ~~~~~DVvIVGaGpAGLalA~~La~~Gl---~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~  101 (447)
T PLN02463         25 KSRVVDLVVVGGGPAGLAVAQQVSEAGL---SVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKK  101 (447)
T ss_pred             cccCceEEEECCCHHHHHHHHHHHHCCC---eEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCC
Confidence            4556899999999999999999999887   89999997653322110 000000  000 000000000        00


Q ss_pred             cccCCCCC--------CCCHhHHHHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCCC
Q 011351          116 TCVGSGGE--------RQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  175 (488)
Q Consensus       116 ~~~~~~~~--------~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~~  175 (488)
                      ......+.        ....+.+...+++++. ++|++++....  .|++++|+++.+|.||.|+|....
T Consensus       102 ~~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~-~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~  170 (447)
T PLN02463        102 KDLDRPYGRVNRKKLKSKMLERCIANGVQFHQ-AKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRC  170 (447)
T ss_pred             ccccCcceeEEHHHHHHHHHHHHhhcCCEEEe-eEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcC
Confidence            00000000        1112223456899874 68888876543  577888988999999999998754

>PRK06834 hypothetical protein; Provisional

Probab=98.68  E-value=1.2e-07  Score=97.55  Aligned_cols=123  Identities=22%  Similarity=0.313  Sum_probs=74.5

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC--CCC-CCC-------------ccccCCCCC-------
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY--ERP-ALT-------------KGYLFPLDK-------  106 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~--~~~-~l~-------------~~~~~~~~~-------  106 (488)
                      ..++|+||||||+|+++|..|++.|.   +|+|||+.+...+  .|. .++             ..+......       
T Consensus         2 ~~~dVlIVGaGp~Gl~lA~~La~~G~---~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~   78 (488)
T PRK06834          2 TEHAVVIAGGGPTGLMLAGELALAGV---DVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFA   78 (488)
T ss_pred             CcceEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceee
Confidence            35899999999999999999999988   8999999864321  110 000             000000000       


Q ss_pred             -CCCCCCCcccc--cC-----CCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCCC
Q 011351          107 -KPARLPGFHTC--VG-----SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  175 (488)
Q Consensus       107 -~~~~~~~~~~~--~~-----~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~~  175 (488)
                       ...+...+...  .+     ......+.+.+++.+++++.+++|+++..++.  .+++.+|+++.+|+||.|.|....
T Consensus        79 ~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~  157 (488)
T PRK06834         79 ATRLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSL  157 (488)
T ss_pred             eEecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCC
Confidence             00000000000  00     00000112334567899999999999976654  456667778999999999998764

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.68  E-value=2.6e-07  Score=89.04  Aligned_cols=99  Identities=22%  Similarity=0.317  Sum_probs=78.9

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc---Cc--------cc----ccCHHHHHHHHHHHHHcCcEEEcCCeEE
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH---LL--------QR----LFTPSLAQRYEQLYQQNGVKFVKGASIK  273 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~---~l--------~~----~~~~~~~~~~~~~l~~~GV~v~~~~~v~  273 (488)
                      +++|||+|+.|+++|..|.+.|.+|+++++.+.   +.        +.    ..+.++...+.+.+++.|+++++ .+++
T Consensus         2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~   80 (300)
T TIGR01292         2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-EEVI   80 (300)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-EEEE
Confidence            589999999999999999999999999997641   11        11    12357778888889999999999 7899


Q ss_pred             EEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCCh
Q 011351          274 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  310 (488)
Q Consensus       274 ~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~  310 (488)
                      +++..+ .. ..+.+.+++++.+|.+|+|+|..|+..
T Consensus        81 ~v~~~~-~~-~~v~~~~~~~~~~d~liiAtG~~~~~~  115 (300)
T TIGR01292        81 KVDLSD-RP-FKVKTGDGKEYTAKAVIIATGASARKL  115 (300)
T ss_pred             EEEecC-Ce-eEEEeCCCCEEEeCEEEECCCCCcccC
Confidence            998643 22 246677888999999999999988643

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=98.67  E-value=4.6e-07  Score=86.75  Aligned_cols=110  Identities=17%  Similarity=0.302  Sum_probs=86.5

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc------------------------------------------
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------------  245 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~------------------------------------------  245 (488)
                      ..|+|||+|+.|+-+|..+.+.|.+|++++..+.+-.+                                          
T Consensus         4 ~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~~d   83 (408)
T COG2081           4 FDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTPED   83 (408)
T ss_pred             ceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCHHH
Confidence            46899999999999999999999999999987332211                                          


Q ss_pred             -------------------cc-----CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEE
Q 011351          246 -------------------LF-----TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI  301 (488)
Q Consensus       246 -------------------~~-----~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~  301 (488)
                                         .|     ...+.+.+.+.+++.||+++++++|.+++.++  ....+.+.+|+++.||.+|+
T Consensus        84 ~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~--~~f~l~t~~g~~i~~d~lil  161 (408)
T COG2081          84 FIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDD--SGFRLDTSSGETVKCDSLIL  161 (408)
T ss_pred             HHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecC--ceEEEEcCCCCEEEccEEEE
Confidence                               11     12466778888999999999999999999653  33468889998999999999


Q ss_pred             eec--CccCC-------hhhhhcCCcc
Q 011351          302 GIG--AKPTV-------SPFERVGLNS  319 (488)
Q Consensus       302 a~G--~~p~~-------~~~~~~gl~~  319 (488)
                      |+|  ..|.+       .++++.|+..
T Consensus       162 AtGG~S~P~lGstg~gy~iA~~~G~~I  188 (408)
T COG2081         162 ATGGKSWPKLGSTGFGYPIARQFGHTI  188 (408)
T ss_pred             ecCCcCCCCCCCCchhhHHHHHcCCcc
Confidence            999  44532       3577777664

>PRK10015 oxidoreductase; Provisional

Probab=98.66  E-value=7.8e-08  Score=97.29  Aligned_cols=123  Identities=17%  Similarity=0.241  Sum_probs=71.4

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCC---CCc---cccCCCC--CCCC--CCC------
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA---LTK---GYLFPLD--KKPA--RLP------  112 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~---l~~---~~~~~~~--~~~~--~~~------  112 (488)
                      +.++||+||||||||++||+.|++.|+   +|+|||+.+........   ++.   ..+.+..  ..+.  ...      
T Consensus         3 ~~~~DViIVGgGpAG~~aA~~LA~~G~---~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~   79 (429)
T PRK10015          3 DDKFDAIVVGAGVAGSVAALVMARAGL---DVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISF   79 (429)
T ss_pred             ccccCEEEECcCHHHHHHHHHHHhCCC---eEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEE
Confidence            346899999999999999999999988   89999998764321100   000   0000000  0000  000      


Q ss_pred             -------Ccc--cc-----cCCCC--CC-C----CHhHHHHCCCeEEeCCcEEEEeCCCcEEE--eCCCcEEEeccEEec
Q 011351          113 -------GFH--TC-----VGSGG--ER-Q----TPEWYKEKGIEMIYQDPVTSIDIEKQTLI--TNSGKLLKYGSLIVA  169 (488)
Q Consensus       113 -------~~~--~~-----~~~~~--~~-~----~~~~~~~~~i~~~~~~~v~~id~~~~~v~--~~~g~~i~yd~lVlA  169 (488)
                             .+.  ..     ....+  .+ .    +.+..++.|++++.+++|+++..++..+.  ..++.++.+|.+|+|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~A  159 (429)
T PRK10015         80 LTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILA  159 (429)
T ss_pred             EeCCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEc
Confidence                   000  00     00000  01 1    12333557999999889998876544332  234557999999999


Q ss_pred             cCCCC
Q 011351          170 TGCTA  174 (488)
Q Consensus       170 tG~~~  174 (488)
                      +|...
T Consensus       160 dG~~s  164 (429)
T PRK10015        160 DGVNS  164 (429)
T ss_pred             cCcch
Confidence            99754

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.66  E-value=1.1e-07  Score=91.32  Aligned_cols=120  Identities=22%  Similarity=0.339  Sum_probs=69.4

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC--CCCcc---c----------------cCCCCCCCCC
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP--ALTKG---Y----------------LFPLDKKPAR  110 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~--~l~~~---~----------------~~~~~~~~~~  110 (488)
                      +||+|||||+||+++|..|++.|.   +|+|+|+.+.......  .+...   .                +.........
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~g~---~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   77 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADKGL---RVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVE   77 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEE
Confidence            589999999999999999999987   8999999875322100  00000   0                0000000000


Q ss_pred             CC--C--cccccCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCc--EEEeCC-CcEEEeccEEeccCCCC
Q 011351          111 LP--G--FHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNS-GKLLKYGSLIVATGCTA  174 (488)
Q Consensus       111 ~~--~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~-g~~i~yd~lVlAtG~~~  174 (488)
                      .+  .  ............+.+...+.+++++.+++|+++..+..  .+.+.+ +.++.+|++|+|+|...
T Consensus        78 ~~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s  148 (295)
T TIGR02032        78 IPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRS  148 (295)
T ss_pred             eccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcch
Confidence            00  0  00000000111122334567899999999988765544  344343 45799999999999754

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=98.65  E-value=8.2e-08  Score=97.19  Aligned_cols=123  Identities=20%  Similarity=0.293  Sum_probs=71.9

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC---CCCcc---ccCCC--CCCC-CCCC-------
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP---ALTKG---YLFPL--DKKP-ARLP-------  112 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~---~l~~~---~~~~~--~~~~-~~~~-------  112 (488)
                      ..++||+|||||+||++||..|+++|+   +|+|||+.+.......   .++..   .+.+.  ...+ .+..       
T Consensus         3 ~~~~DViIVGaGpAG~~aA~~La~~G~---~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~   79 (428)
T PRK10157          3 EDIFDAIIVGAGLAGSVAALVLAREGA---QVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAF   79 (428)
T ss_pred             cccCcEEEECcCHHHHHHHHHHHhCCC---eEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEE
Confidence            346999999999999999999999988   8999999865432110   00000   00000  0000 0000       


Q ss_pred             ----C---cccc-------cCCCCC-------CCCHhHHHHCCCeEEeCCcEEEEeCCCcEE--EeCCCcEEEeccEEec
Q 011351          113 ----G---FHTC-------VGSGGE-------RQTPEWYKEKGIEMIYQDPVTSIDIEKQTL--ITNSGKLLKYGSLIVA  169 (488)
Q Consensus       113 ----~---~~~~-------~~~~~~-------~~~~~~~~~~~i~~~~~~~v~~id~~~~~v--~~~~g~~i~yd~lVlA  169 (488)
                          +   +...       ....+.       ..+.+..++.|++++.+++|+++..++..+  ...++.++.+|.+|.|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A  159 (428)
T PRK10157         80 MTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILA  159 (428)
T ss_pred             EcCCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEE
Confidence                0   0000       000000       001223345799999999999987544332  3446678999999999


Q ss_pred             cCCCC
Q 011351          170 TGCTA  174 (488)
Q Consensus       170 tG~~~  174 (488)
                      +|...
T Consensus       160 ~G~~s  164 (428)
T PRK10157        160 DGVNS  164 (428)
T ss_pred             eCCCH
Confidence            99754

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.64  E-value=9.5e-08  Score=97.31  Aligned_cols=98  Identities=15%  Similarity=0.294  Sum_probs=73.1

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      ..++|+|||||++|+.+|..|++.|.   +|+|+++.+...-           ....   .+           .....+.
T Consensus       156 ~~~~vvIIGgG~~g~e~A~~l~~~g~---~Vtli~~~~~~l~-----------~~~~---~~-----------~~~~~~~  207 (438)
T PRK07251        156 LPERLGIIGGGNIGLEFAGLYNKLGS---KVTVLDAASTILP-----------REEP---SV-----------AALAKQY  207 (438)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCC---eEEEEecCCccCC-----------CCCH---HH-----------HHHHHHH
Confidence            35689999999999999999999876   8999998765310           0000   00           0123566


Q ss_pred             HHHCCCeEEeCCcEEEEeCCCcEE-EeCCCcEEEeccEEeccCCCCC
Q 011351          130 YKEKGIEMIYQDPVTSIDIEKQTL-ITNSGKLLKYGSLIVATGCTAS  175 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~~v-~~~~g~~i~yd~lVlAtG~~~~  175 (488)
                      +++.+++++.+++|++++.++..+ ...+++++.||.+++|+|..|.
T Consensus       208 l~~~GI~i~~~~~V~~i~~~~~~v~v~~~g~~i~~D~viva~G~~p~  254 (438)
T PRK07251        208 MEEDGITFLLNAHTTEVKNDGDQVLVVTEDETYRFDALLYATGRKPN  254 (438)
T ss_pred             HHHcCCEEEcCCEEEEEEecCCEEEEEECCeEEEcCEEEEeeCCCCC
Confidence            788899999999999998765443 3345678999999999998876

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=98.64  E-value=1.5e-07  Score=94.49  Aligned_cols=123  Identities=21%  Similarity=0.254  Sum_probs=73.6

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCC---CCcc----ccCCCCC-CCCCCCC-ccccc--
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA---LTKG----YLFPLDK-KPARLPG-FHTCV--  118 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~---l~~~----~~~~~~~-~~~~~~~-~~~~~--  118 (488)
                      +++||+||||||||++||+.|++.|+   +|+|+|+.+...+....   ++..    +...... ....+.+ .....  
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~G~---~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~   78 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKAGL---DVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGE   78 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHHcCC---eEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCC
Confidence            57899999999999999999999996   89999998765443211   1100    0000000 0000000 00000  


Q ss_pred             --------CCC-------CCCCCHhHHHHCCCeEEeCCcEEEEeCCCc--EEE-eCCCcEEEeccEEeccCCCCC
Q 011351          119 --------GSG-------GERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLI-TNSGKLLKYGSLIVATGCTAS  175 (488)
Q Consensus       119 --------~~~-------~~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v~-~~~g~~i~yd~lVlAtG~~~~  175 (488)
                              +..       +...+.+..++.|.+++.++.++.+..++.  .+. ..++.++.++.+|.|+|....
T Consensus        79 ~~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s~  153 (396)
T COG0644          79 KVAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSA  153 (396)
T ss_pred             ceEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcchH
Confidence                    000       011122344567999999999988876653  222 233357999999999997653

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.64  E-value=2.9e-07  Score=94.97  Aligned_cols=37  Identities=30%  Similarity=0.477  Sum_probs=33.8

Q ss_pred             CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      ...++||||||||.|||.||.++++.|.   +|+|+||.+
T Consensus         3 ~~~~~DvvVIG~G~AGl~AAi~aa~~g~---~V~l~~K~~   39 (562)
T COG1053           3 TIHEFDVVVIGGGGAGLRAAIEAAEAGL---KVALLSKAP   39 (562)
T ss_pred             ccccCCEEEECCcHHHHHHHHHHHhcCC---cEEEEEccc
Confidence            4567899999999999999999999986   899999976

>PRK07190 hypothetical protein; Provisional

Probab=98.63  E-value=1.3e-07  Score=97.07  Aligned_cols=123  Identities=22%  Similarity=0.239  Sum_probs=74.0

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-CCCC--------------CCCcccc-----------C
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP-YERP--------------ALTKGYL-----------F  102 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~-~~~~--------------~l~~~~~-----------~  102 (488)
                      +..++|+||||||+|+++|..|++.|.   +|+|||+.+... ..+.              .+...+.           +
T Consensus         3 ~~~~dVlIVGAGPaGL~lA~~Lar~Gi---~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~   79 (487)
T PRK07190          3 TQVTDVVIIGAGPVGLMCAYLGQLCGL---NTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVW   79 (487)
T ss_pred             CccceEEEECCCHHHHHHHHHHHHcCC---CEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEe
Confidence            446899999999999999999999988   799999987431 1110              0000000           0


Q ss_pred             CCCCCC-------CCCCCc-c---cccC-CCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEe
Q 011351          103 PLDKKP-------ARLPGF-H---TCVG-SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIV  168 (488)
Q Consensus       103 ~~~~~~-------~~~~~~-~---~~~~-~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVl  168 (488)
                      ......       ..+.+. .   ...+ ......+.+.+.+.|++++.+++|+++..+..  .+++.+|+++.+++||.
T Consensus        80 ~~g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVg  159 (487)
T PRK07190         80 ANGKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIG  159 (487)
T ss_pred             cCCceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEE
Confidence            000000       000000 0   0000 00000112344567999999999999876543  45667788899999999


Q ss_pred             ccCCCC
Q 011351          169 ATGCTA  174 (488)
Q Consensus       169 AtG~~~  174 (488)
                      |+|...
T Consensus       160 ADG~~S  165 (487)
T PRK07190        160 ADGSRS  165 (487)
T ss_pred             CCCCCH
Confidence            999865

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.60  E-value=9.6e-08  Score=98.04  Aligned_cols=97  Identities=20%  Similarity=0.330  Sum_probs=72.5

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (488)
                      .++++|||||++|+.+|..|++.|.   +|+|+++.+...   |.+.        .   .+           .....+.+
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~---~Vtli~~~~~~l---~~~~--------~---~~-----------~~~~~~~l  221 (461)
T TIGR01350       170 PESLVIIGGGVIGIEFASIFASLGS---KVTVIEMLDRIL---PGED--------A---EV-----------SKVVAKAL  221 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---cEEEEEcCCCCC---CCCC--------H---HH-----------HHHHHHHH
Confidence            4799999999999999999999876   899999876421   0000        0   00           01234567


Q ss_pred             HHCCCeEEeCCcEEEEeCCCcE--EEeCCC--cEEEeccEEeccCCCCC
Q 011351          131 KEKGIEMIYQDPVTSIDIEKQT--LITNSG--KLLKYGSLIVATGCTAS  175 (488)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~~--v~~~~g--~~i~yd~lVlAtG~~~~  175 (488)
                      ++.+++++.+++|.+++.+...  +.+.+|  +++.+|.||+|+|..|.
T Consensus       222 ~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~  270 (461)
T TIGR01350       222 KKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPN  270 (461)
T ss_pred             HHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCccc
Confidence            7889999999999998866543  444556  47999999999998875

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.59  E-value=1.6e-07  Score=94.75  Aligned_cols=124  Identities=19%  Similarity=0.248  Sum_probs=72.8

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---CC-CCC-------------ccc-----------cC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---RP-ALT-------------KGY-----------LF  102 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~---~~-~l~-------------~~~-----------~~  102 (488)
                      ++||+|||||++|+++|..|++.|. +.+|+|+|+.+.....   +. .++             ..+           +.
T Consensus         1 ~~dv~IvGaG~aGl~~A~~L~~~g~-g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~   79 (403)
T PRK07333          1 QCDVVIAGGGYVGLALAVALKQAAP-HLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVIT   79 (403)
T ss_pred             CCCEEEECccHHHHHHHHHHhcCCC-CCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEE
Confidence            4789999999999999999999862 2389999998642110   00 000             000           00


Q ss_pred             C-CCCCCCCC--CCccc-c-cCCC---------CCCCCHhHHHHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccE
Q 011351          103 P-LDKKPARL--PGFHT-C-VGSG---------GERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSL  166 (488)
Q Consensus       103 ~-~~~~~~~~--~~~~~-~-~~~~---------~~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~l  166 (488)
                      . ........  ..+.. . .+..         ....+.+.+.+.+++++.+++|++++.+..  .+++.+|+.+.+|.|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~v  159 (403)
T PRK07333         80 DSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLL  159 (403)
T ss_pred             eCCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEE
Confidence            0 00000000  00000 0 0000         011122334556899999999999976554  466678888999999


Q ss_pred             EeccCCCCC
Q 011351          167 IVATGCTAS  175 (488)
Q Consensus       167 VlAtG~~~~  175 (488)
                      |.|+|....
T Consensus       160 I~AdG~~S~  168 (403)
T PRK07333        160 VAADGARSK  168 (403)
T ss_pred             EEcCCCChH
Confidence            999997653

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=98.59  E-value=2.9e-07  Score=92.46  Aligned_cols=125  Identities=22%  Similarity=0.394  Sum_probs=74.6

Q ss_pred             CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC--C-----CCCc---ccc-----CCC----CCCC
Q 011351           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER--P-----ALTK---GYL-----FPL----DKKP  108 (488)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~--~-----~l~~---~~~-----~~~----~~~~  108 (488)
                      +..++||+|||||++|+++|..|+++|+   +|+|||+.+...+..  +     .++.   ..+     ...    ...+
T Consensus         3 ~~~~~dV~IvGaG~aGl~~A~~La~~G~---~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~   79 (392)
T PRK08773          3 RRSRRDAVIVGGGVVGAACALALADAGL---SVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQP   79 (392)
T ss_pred             CCCCCCEEEECcCHHHHHHHHHHhcCCC---EEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCc
Confidence            3456899999999999999999999988   899999976432210  0     0000   000     000    0000


Q ss_pred             C-CC----------CCcccc-cCCC---C-------CCCCHhHHHHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEec
Q 011351          109 A-RL----------PGFHTC-VGSG---G-------ERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYG  164 (488)
Q Consensus       109 ~-~~----------~~~~~~-~~~~---~-------~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd  164 (488)
                      . ++          ..+... .+..   +       ...+.+.+++.+++++.+++|+++..+..  ++++++|+++.+|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~  159 (392)
T PRK08773         80 YRRMRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAA  159 (392)
T ss_pred             ccEEEEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeC
Confidence            0 00          000000 0000   0       00011224456899999999999876543  4666788889999


Q ss_pred             cEEeccCCCCC
Q 011351          165 SLIVATGCTAS  175 (488)
Q Consensus       165 ~lVlAtG~~~~  175 (488)
                      .||.|+|....
T Consensus       160 ~vV~AdG~~S~  170 (392)
T PRK08773        160 LAIAADGAAST  170 (392)
T ss_pred             EEEEecCCCch
Confidence            99999998763

>PRK06184 hypothetical protein; Provisional

Probab=98.59  E-value=2e-07  Score=96.72  Aligned_cols=123  Identities=15%  Similarity=0.164  Sum_probs=72.3

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC-CC--------------CCCCccc-----------cCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY-ER--------------PALTKGY-----------LFP  103 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~-~~--------------~~l~~~~-----------~~~  103 (488)
                      .+.+|+||||||+|+++|..|+++|+   +|+|||+.+...- .+              -.+...+           .+.
T Consensus         2 ~~~dVlIVGaGpaGl~~A~~La~~Gi---~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~   78 (502)
T PRK06184          2 TTTDVLIVGAGPTGLTLAIELARRGV---SFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYR   78 (502)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC---cEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEe
Confidence            35899999999999999999999998   8999999864310 00              0000000           000


Q ss_pred             CCCCC--CCCCC-cccccCCC-----------CCCCCHhHHHHCCCeEEeCCcEEEEeCCCc--EEEe---CCCcEEEec
Q 011351          104 LDKKP--ARLPG-FHTCVGSG-----------GERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLIT---NSGKLLKYG  164 (488)
Q Consensus       104 ~~~~~--~~~~~-~~~~~~~~-----------~~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v~~---~~g~~i~yd  164 (488)
                      .....  ..+.. ........           ....+.+.+.+.+++++.++++++++.+..  ++++   .+++++.+|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~  158 (502)
T PRK06184         79 DDGSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRAR  158 (502)
T ss_pred             CCceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeC
Confidence            00000  00000 00000000           001122334556899999999999976554  3444   556789999


Q ss_pred             cEEeccCCCCC
Q 011351          165 SLIVATGCTAS  175 (488)
Q Consensus       165 ~lVlAtG~~~~  175 (488)
                      +||.|+|....
T Consensus       159 ~vVgADG~~S~  169 (502)
T PRK06184        159 YLVGADGGRSF  169 (502)
T ss_pred             EEEECCCCchH
Confidence            99999998753

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=98.58  E-value=1.6e-07  Score=87.77  Aligned_cols=121  Identities=15%  Similarity=0.150  Sum_probs=69.7

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCC-------------CCC-C-CCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDK-------------KPA-R-LPG  113 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~-------------~~~-~-~~~  113 (488)
                      ...+||+|||||+||++||.+|++.|+   +|+|+|+.+......  ...+.+++...             .+. . ..+
T Consensus        23 ~~~~DVvIVGgGpAGl~AA~~la~~G~---~V~liEk~~~~Ggg~--~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g   97 (257)
T PRK04176         23 YLEVDVAIVGAGPSGLTAAYYLAKAGL---KVAVFERKLSFGGGM--WGGGMLFNKIVVQEEADEILDEFGIRYKEVEDG   97 (257)
T ss_pred             hccCCEEEECccHHHHHHHHHHHhCCC---eEEEEecCCCCCCcc--ccCccccccccchHHHHHHHHHCCCCceeecCc
Confidence            346899999999999999999999887   899999987542210  00011111000             000 0 000


Q ss_pred             cccccCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCc-EE---EeC-----------CCcEEEeccEEeccCCCC
Q 011351          114 FHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ-TL---ITN-----------SGKLLKYGSLIVATGCTA  174 (488)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~-~v---~~~-----------~g~~i~yd~lVlAtG~~~  174 (488)
                      ............+.+...+.|++++.+++|.++..++. .+   .+.           +...+.++.+|+|||...
T Consensus        98 ~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a  173 (257)
T PRK04176         98 LYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDA  173 (257)
T ss_pred             ceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCc
Confidence            00000000011122334567999999988988864332 22   111           224689999999999754

>PRK07236 hypothetical protein; Provisional

Probab=98.57  E-value=1.4e-07  Score=94.49  Aligned_cols=124  Identities=14%  Similarity=0.082  Sum_probs=72.0

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-C--CCcc---cc-----CCCCCC--CCCCCCcc
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-A--LTKG---YL-----FPLDKK--PARLPGFH  115 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~-~--l~~~---~~-----~~~~~~--~~~~~~~~  115 (488)
                      +++++|+|||||++|+++|..|++.|+   +|+|+|+.+.....+. .  +...   .+     ......  +.....+.
T Consensus         4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~---~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~   80 (386)
T PRK07236          4 MSGPRAVVIGGSLGGLFAALLLRRAGW---DVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYL   80 (386)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCC---CEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEE
Confidence            556899999999999999999999988   8999999864311110 0  0000   00     000000  00000000


Q ss_pred             cccCCC-----C---C---CCCHhHH-HH-CCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCCC
Q 011351          116 TCVGSG-----G---E---RQTPEWY-KE-KGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  175 (488)
Q Consensus       116 ~~~~~~-----~---~---~~~~~~~-~~-~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~~  175 (488)
                      ...+..     .   .   ..+.+.+ +. .+++++.+++|+++..+..  ++++++|+++.+|.||.|-|....
T Consensus        81 ~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~  155 (386)
T PRK07236         81 DRDGRVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRST  155 (386)
T ss_pred             eCCCCEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCch
Confidence            000000     0   0   0011111 11 2467888999999976554  467788999999999999997653

>TIGR00292 thiazole biosynthesis enzyme

Probab=98.55  E-value=1.8e-07  Score=87.16  Aligned_cols=120  Identities=17%  Similarity=0.191  Sum_probs=69.7

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCC------CCCCCCCCcccc-cCC--
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLD------KKPARLPGFHTC-VGS--  120 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~------~~~~~~~~~~~~-~~~--  120 (488)
                      ..+||+|||||+||++||+.|++.|.   +|+|+|++.......  ...+.+++..      ....+..+.... .+.  
T Consensus        20 ~~~DVvIVGgGpAGL~aA~~la~~G~---~V~vlEk~~~~Ggg~--~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~   94 (254)
T TIGR00292        20 AESDVIIVGAGPSGLTAAYYLAKNGL---KVCVLERSLAFGGGS--WGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGY   94 (254)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCCCCccc--cCCCcceecccccchHHHHHHHCCCCeeeccCce
Confidence            46899999999999999999999987   899999997643210  0000111000      000000000000 000  


Q ss_pred             ------CCCCCCHhHHHHCCCeEEeCCcEEEEeCCCc--E---EEeC-----------CCcEEEeccEEeccCCCC
Q 011351          121 ------GGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--T---LITN-----------SGKLLKYGSLIVATGCTA  174 (488)
Q Consensus       121 ------~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~---v~~~-----------~g~~i~yd~lVlAtG~~~  174 (488)
                            +....+.+...+.+++++.++.|.++..++.  .   +.+.           +...+.++.+|.|||...
T Consensus        95 ~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a  170 (254)
T TIGR00292        95 VVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDA  170 (254)
T ss_pred             EEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCc
Confidence                  0011122334567999999889988875433  2   2222           124689999999999653

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=98.54  E-value=9.5e-07  Score=76.20  Aligned_cols=117  Identities=15%  Similarity=0.307  Sum_probs=64.9

Q ss_pred             EEEcCchHHHHHHHHHHHcC--CCCCcEEEEcCCCCC---CCCCCCCCccccCCCC----CCCCCC-CCcccccCCCC--
Q 011351           55 VIVGGGNAAGYAARTFVEHG--MADGRLCIVSKEAYA---PYERPALTKGYLFPLD----KKPARL-PGFHTCVGSGG--  122 (488)
Q Consensus        55 vIIGgG~AGl~aA~~L~~~g--~~~~~V~lie~~~~~---~~~~~~l~~~~~~~~~----~~~~~~-~~~~~~~~~~~--  122 (488)
                      +|||||++|++++.+|.+..  ....+|+|+|+.+..   +|.........+....    ..+.+. +.|..+.....  
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~~   80 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGAD   80 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCcc
Confidence            59999999999999999984  346699999996542   2322111100111000    000000 11111111000  


Q ss_pred             --------CCCCHh----H----H----HH--CCC--eEEeCCcEEEEeCCC--cEEEeCCCcEEEeccEEeccCC
Q 011351          123 --------ERQTPE----W----Y----KE--KGI--EMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGC  172 (488)
Q Consensus       123 --------~~~~~~----~----~----~~--~~i--~~~~~~~v~~id~~~--~~v~~~~g~~i~yd~lVlAtG~  172 (488)
                              ......    +    +    +.  .++  .++ ..+|++++...  ..+.+.+|..+.+|+||||||.
T Consensus        81 ~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~-~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh  155 (156)
T PF13454_consen   81 EAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHV-RAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH  155 (156)
T ss_pred             cccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEE-eeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence                    001111    1    1    11  233  344 36899888764  4688899999999999999995

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=98.54  E-value=9e-08  Score=100.66  Aligned_cols=31  Identities=32%  Similarity=0.463  Sum_probs=29.0

Q ss_pred             EEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           54 FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        54 vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      |||||+|.||++||.++++.|.   +|+|+||.+
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~---~VilleK~~   31 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGY---HVKLFSYVD   31 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCC---CEEEEEecC
Confidence            6999999999999999999887   899999986

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=98.54  E-value=4.4e-07  Score=95.40  Aligned_cols=102  Identities=21%  Similarity=0.258  Sum_probs=65.5

Q ss_pred             cCCeEEEECCCHHH-HHHHHHHHhCCCcEEEEecCCcCcc-------------cccCHHHHHHHHHHHHHcCcEEEcCCe
Q 011351          206 KAKKVVVVGGGYIG-MEVAAAAVGWKLDTTIIFPENHLLQ-------------RLFTPSLAQRYEQLYQQNGVKFVKGAS  271 (488)
Q Consensus       206 ~~~~vvVvG~G~~g-~e~A~~l~~~g~~v~lv~~~~~~l~-------------~~~~~~~~~~~~~~l~~~GV~v~~~~~  271 (488)
                      ...++.++|++.++ .+++..+...+..+.+..+..+++.             ...+..+...+.+.+++.|+++++++.
T Consensus       160 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~a~~~Gv~i~~~t~  239 (581)
T PRK06134        160 PLRETSFMGMPIMAGADLAAFLNPTRSFRAFLHVARRFARHLIDLARHGRGMHLVNGNALVARLLKSAEDLGVRIWESAP  239 (581)
T ss_pred             ccccccccccccccHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHhCCCEEEcCCE
Confidence            34566677777655 6666666555444333222111110             012345667788888999999999999


Q ss_pred             EEEEEeCCCCcEEEEEeC--CCc-EEEc-CEEEEeecCccC
Q 011351          272 IKNLEAGSDGRVAAVKLE--DGS-TIDA-DTIVIGIGAKPT  308 (488)
Q Consensus       272 v~~i~~~~~~~v~~v~l~--~g~-~i~~-D~vi~a~G~~p~  308 (488)
                      ++++..+ ++++.+|...  ++. ++.+ +.||+|+|--.+
T Consensus       240 v~~l~~~-~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~  279 (581)
T PRK06134        240 ARELLRE-DGRVAGAVVETPGGLQEIRARKGVVLAAGGFPH  279 (581)
T ss_pred             EEEEEEe-CCEEEEEEEEECCcEEEEEeCCEEEEcCCCccc
Confidence            9998754 5777666553  333 5788 999999987654

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=98.53  E-value=1.4e-06  Score=88.06  Aligned_cols=62  Identities=16%  Similarity=0.317  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCC-----CcEEEcCEEEEeecCccCChhhhh
Q 011351          250 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED-----GSTIDADTIVIGIGAKPTVSPFER  314 (488)
Q Consensus       250 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~-----g~~i~~D~vi~a~G~~p~~~~~~~  314 (488)
                      .+...+.+.+++.|++++.+++|++++.+ ++.+ .+.+.+     +.++.+|.||+|+|.... .++..
T Consensus       198 ~~~~~l~~~a~~~G~~i~~~~~V~~i~~~-~~~~-~v~~~~~~~~~~~~i~a~~vV~a~G~~s~-~l~~~  264 (410)
T PRK12409        198 KFTTGLAAACARLGVQFRYGQEVTSIKTD-GGGV-VLTVQPSAEHPSRTLEFDGVVVCAGVGSR-ALAAM  264 (410)
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEE-EEEEEcCCCCccceEecCEEEECCCcChH-HHHHH
Confidence            45566777888999999999999999864 3333 233322     236999999999997653 34433

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=98.52  E-value=4.3e-06  Score=84.71  Aligned_cols=64  Identities=30%  Similarity=0.493  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcC
Q 011351          250 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG  316 (488)
Q Consensus       250 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~g  316 (488)
                      .+...+.+.+++.|++++.++.|++++.. ++.+..+.+.++ ++.+|.||+|+|.... .++...+
T Consensus       202 ~~~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~v~t~~~-~~~a~~VV~a~G~~~~-~l~~~~g  265 (416)
T PRK00711        202 LFTQRLAAMAEQLGVKFRFNTPVDGLLVE-GGRITGVQTGGG-VITADAYVVALGSYST-ALLKPLG  265 (416)
T ss_pred             HHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCEEEEEEeCCc-EEeCCEEEECCCcchH-HHHHHhC
Confidence            55667777788899999999999999864 445555666655 6999999999998653 4444433

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.51  E-value=2.3e-07  Score=70.18  Aligned_cols=78  Identities=18%  Similarity=0.371  Sum_probs=58.5

Q ss_pred             eEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHHH
Q 011351           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKE  132 (488)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (488)
                      +|+|||||+.|+.+|..|++.|.   +|+||++.+...   +.+..           ..           .....+++++
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~---~vtli~~~~~~~---~~~~~-----------~~-----------~~~~~~~l~~   52 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGK---EVTLIERSDRLL---PGFDP-----------DA-----------AKILEEYLRK   52 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTS---EEEEEESSSSSS---TTSSH-----------HH-----------HHHHHHHHHH
T ss_pred             CEEEECcCHHHHHHHHHHHHhCc---EEEEEeccchhh---hhcCH-----------HH-----------HHHHHHHHHH
Confidence            68999999999999999999886   899999887632   11110           00           1234567888


Q ss_pred             CCCeEEeCCcEEEEeCCCc--EEEeCCC
Q 011351          133 KGIEMIYQDPVTSIDIEKQ--TLITNSG  158 (488)
Q Consensus       133 ~~i~~~~~~~v~~id~~~~--~v~~~~g  158 (488)
                      .|+++++++.+.+++.+..  +|+++||
T Consensus        53 ~gV~v~~~~~v~~i~~~~~~~~V~~~~g   80 (80)
T PF00070_consen   53 RGVEVHTNTKVKEIEKDGDGVEVTLEDG   80 (80)
T ss_dssp             TTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred             CCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence            9999999999999987654  3666654

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=98.50  E-value=7.1e-07  Score=88.78  Aligned_cols=57  Identities=18%  Similarity=0.254  Sum_probs=40.7

Q ss_pred             cCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecC
Q 011351          247 FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  305 (488)
Q Consensus       247 ~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~  305 (488)
                      +...+...++...++...+++++++|+++..+..+  ..+.+.+|.++.+|.||+++..
T Consensus       210 ~~gG~~~l~~al~~~l~~~i~~~~~V~~i~~~~~~--~~~~~~~g~~~~~D~VI~t~p~  266 (444)
T COG1232         210 LRGGLQSLIEALAEKLEAKIRTGTEVTKIDKKGAG--KTIVDVGGEKITADGVISTAPL  266 (444)
T ss_pred             cCccHHHHHHHHHHHhhhceeecceeeEEEEcCCc--cEEEEcCCceEEcceEEEcCCH
Confidence            34445555555555555669999999999975333  3577888989999999998654

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=98.50  E-value=4.9e-07  Score=90.78  Aligned_cols=124  Identities=17%  Similarity=0.278  Sum_probs=72.1

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCC--------CC-------c--cccCCCC---CCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA--------LT-------K--GYLFPLD---KKP  108 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~--------l~-------~--~~~~~~~---~~~  108 (488)
                      .+.+||+|||||++|+++|..|++.|+   +|+|||+.+...+....        ++       +  +++....   ..+
T Consensus         3 ~~~~dViIvGgG~aGl~~A~~La~~G~---~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~   79 (391)
T PRK08020          3 NQPTDIAIVGGGMVGAALALGLAQHGF---SVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHP   79 (391)
T ss_pred             cccccEEEECcCHHHHHHHHHHhcCCC---EEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcc
Confidence            456899999999999999999999987   89999997632221000        00       0  0000000   000


Q ss_pred             C-C-----C-CCccc-----ccCCC--CCCC---C----HhHHHHC-CCeEEeCCcEEEEeCCCc--EEEeCCCcEEEec
Q 011351          109 A-R-----L-PGFHT-----CVGSG--GERQ---T----PEWYKEK-GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYG  164 (488)
Q Consensus       109 ~-~-----~-~~~~~-----~~~~~--~~~~---~----~~~~~~~-~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd  164 (488)
                      . .     . .+...     .....  +...   +    .+.+... +++++.+++|+++..+..  .+.+++++++.+|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~  159 (391)
T PRK08020         80 YRRLETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAK  159 (391)
T ss_pred             cceEEEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeC
Confidence            0 0     0 00000     00000  0000   1    1122333 899998889998875543  4666788889999


Q ss_pred             cEEeccCCCCC
Q 011351          165 SLIVATGCTAS  175 (488)
Q Consensus       165 ~lVlAtG~~~~  175 (488)
                      .||.|.|....
T Consensus       160 ~vI~AdG~~S~  170 (391)
T PRK08020        160 LVIGADGANSQ  170 (391)
T ss_pred             EEEEeCCCCch
Confidence            99999998653

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=98.49  E-value=2.1e-06  Score=92.05  Aligned_cols=57  Identities=19%  Similarity=0.271  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351          249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  308 (488)
Q Consensus       249 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~  308 (488)
                      ..+...+.+.+++ |++++.++.|++++.. ++.+ .|.+.+|+.+.+|.||+|+|....
T Consensus       408 ~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~-~~~~-~v~t~~g~~~~ad~VV~A~G~~s~  464 (662)
T PRK01747        408 AELCRALLALAGQ-QLTIHFGHEVARLERE-DDGW-QLDFAGGTLASAPVVVLANGHDAA  464 (662)
T ss_pred             HHHHHHHHHhccc-CcEEEeCCEeeEEEEe-CCEE-EEEECCCcEEECCEEEECCCCCcc
Confidence            4566777777777 9999999999999864 3444 377788877899999999998754

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=98.49  E-value=4.1e-07  Score=91.24  Aligned_cols=118  Identities=16%  Similarity=0.194  Sum_probs=68.7

Q ss_pred             eEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-CCCccccC--C-CCCCCCCCCC--------cccccCC
Q 011351           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-ALTKGYLF--P-LDKKPARLPG--------FHTCVGS  120 (488)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~-~l~~~~~~--~-~~~~~~~~~~--------~~~~~~~  120 (488)
                      ||+|||||+||+++|..|++.|.   +|+|||+++..+..+. ......+.  . .......+.+        .......
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~---~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGL---RVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGT   77 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCC---eEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCC
Confidence            69999999999999999999887   8999999865432211 00000000  0 0000000000        0000000


Q ss_pred             --------CCCCCCHhHHHHCCCeEEeCCcEEEEeCC-C--cEEEeCCCcEEEeccEEeccCCCC
Q 011351          121 --------GGERQTPEWYKEKGIEMIYQDPVTSIDIE-K--QTLITNSGKLLKYGSLIVATGCTA  174 (488)
Q Consensus       121 --------~~~~~~~~~~~~~~i~~~~~~~v~~id~~-~--~~v~~~~g~~i~yd~lVlAtG~~~  174 (488)
                              .......+.+.+.+++++. ++|..+... .  ..+++++|+++.++.||.|+|..+
T Consensus        78 ~~~~i~~~~l~~~l~~~~~~~gv~~~~-~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s  141 (388)
T TIGR01790        78 AYGSVDSTRLHEELLQKCPEGGVLWLE-RKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP  141 (388)
T ss_pred             ceeEEcHHHHHHHHHHHHHhcCcEEEc-cEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence                    0001112333456888864 578888765 2  356777887899999999999875

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK09126 hypothetical protein; Provisional

Probab=98.49  E-value=9.2e-07  Score=88.84  Aligned_cols=123  Identities=24%  Similarity=0.332  Sum_probs=72.1

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCC-------CCc---------ccc---CCCCCCCC-
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA-------LTK---------GYL---FPLDKKPA-  109 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~-------l~~---------~~~---~~~~~~~~-  109 (488)
                      ++++|+|||||++|+++|..|++.|+   +|+|+|+.+......+.       ++.         ++.   ......+. 
T Consensus         2 ~~~dviIvGgG~aGl~~A~~L~~~G~---~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~   78 (392)
T PRK09126          2 MHSDIVVVGAGPAGLSFARSLAGSGL---KVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLR   78 (392)
T ss_pred             CcccEEEECcCHHHHHHHHHHHhCCC---cEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccc
Confidence            46899999999999999999999998   89999998652110000       000         000   00000000 


Q ss_pred             -------CCCCccccc----CC-CCC-----CCCH----hHH-HHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEecc
Q 011351          110 -------RLPGFHTCV----GS-GGE-----RQTP----EWY-KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGS  165 (488)
Q Consensus       110 -------~~~~~~~~~----~~-~~~-----~~~~----~~~-~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~  165 (488)
                             .........    .. ...     ....    +.+ +..+++++.+++|+++.....  .|++++|+++.+|.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~  158 (392)
T PRK09126         79 DAKVLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARL  158 (392)
T ss_pred             eEEEEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCE
Confidence                   000000000    00 000     0001    111 235899999999999876543  56677888899999


Q ss_pred             EEeccCCCCC
Q 011351          166 LIVATGCTAS  175 (488)
Q Consensus       166 lVlAtG~~~~  175 (488)
                      ||.|.|....
T Consensus       159 vI~AdG~~S~  168 (392)
T PRK09126        159 LVAADSRFSA  168 (392)
T ss_pred             EEEeCCCCch
Confidence            9999997654

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.48  E-value=1.1e-06  Score=88.24  Aligned_cols=39  Identities=26%  Similarity=0.449  Sum_probs=34.5

Q ss_pred             cCCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           47 FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        47 ~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      |+++.+||+|||||++|+++|..|++.|+   +|+|||+.+.
T Consensus         3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~G~---~v~liE~~~~   41 (388)
T PRK07494          3 MEKEHTDIAVIGGGPAGLAAAIALARAGA---SVALVAPEPP   41 (388)
T ss_pred             CCCCCCCEEEECcCHHHHHHHHHHhcCCC---eEEEEeCCCC
Confidence            34556899999999999999999999987   8999999864

>TIGR02734 crtI_fam phytoene desaturase

Probab=98.48  E-value=1.3e-07  Score=98.19  Aligned_cols=57  Identities=28%  Similarity=0.418  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCc
Q 011351          249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  306 (488)
Q Consensus       249 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~  306 (488)
                      ..+.+.+.+.+++.|+++++++.|++|..+ ++++..|.+++|+++.+|.||++++..
T Consensus       219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~V~~~~g~~~~ad~VI~a~~~~  275 (502)
T TIGR02734       219 GALVAAMAKLAEDLGGELRLNAEVIRIETE-GGRATAVHLADGERLDADAVVSNADLH  275 (502)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCeEEEEEee-CCEEEEEEECCCCEEECCEEEECCcHH
Confidence            467788888899999999999999999864 456668889999899999999998763

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=98.48  E-value=3.8e-07  Score=82.24  Aligned_cols=114  Identities=25%  Similarity=0.381  Sum_probs=67.8

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC------------------CCCCCCC-----------cc---
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP------------------YERPALT-----------KG---   99 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~------------------~~~~~l~-----------~~---   99 (488)
                      .+|+|||+|+||++||..|++.|.   +|||+||+....                  |-+|...           .+   
T Consensus         2 ~siaIVGaGiAGl~aA~~L~~aG~---~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~   78 (331)
T COG3380           2 PSIAIVGAGIAGLAAAYALREAGR---EVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVD   78 (331)
T ss_pred             CcEEEEccchHHHHHHHHHHhcCc---EEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCcee
Confidence            479999999999999999999998   899999987421                  1001000           00   


Q ss_pred             ------ccCCCCCCCCCCCCccc-ccCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCc--EEEeCCC-cEEEeccEEec
Q 011351          100 ------YLFPLDKKPARLPGFHT-CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSG-KLLKYGSLIVA  169 (488)
Q Consensus       100 ------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g-~~i~yd~lVlA  169 (488)
                            +.+.....+.+  +.+. .++...+..+.+ +...+.+++++++|+.+...++  ++++++| +...+|.||||
T Consensus        79 ~W~~~~~~~~~~~~~~~--~d~~pyvg~pgmsalak-~LAtdL~V~~~~rVt~v~~~~~~W~l~~~~g~~~~~~d~vvla  155 (331)
T COG3380          79 VWTPAVWTFTGDGSPPR--GDEDPYVGEPGMSALAK-FLATDLTVVLETRVTEVARTDNDWTLHTDDGTRHTQFDDVVLA  155 (331)
T ss_pred             eccccccccccCCCCCC--CCCCccccCcchHHHHH-HHhccchhhhhhhhhhheecCCeeEEEecCCCcccccceEEEe
Confidence                  00000000000  0000 122222222222 3334778888999999887655  6777555 45789999999


Q ss_pred             cC
Q 011351          170 TG  171 (488)
Q Consensus       170 tG  171 (488)
                      .=
T Consensus       156 ~P  157 (331)
T COG3380         156 IP  157 (331)
T ss_pred             cC
Confidence            64

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=98.48  E-value=2.5e-06  Score=87.26  Aligned_cols=66  Identities=14%  Similarity=0.258  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHH----cC--cEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcCCc
Q 011351          250 SLAQRYEQLYQQ----NG--VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLN  318 (488)
Q Consensus       250 ~~~~~~~~~l~~----~G--V~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~  318 (488)
                      .+...+.+.+++    .|  +++++++.|+.++..+ +....|.+.+| ++.+|.||+|+|.... .+++.+|+.
T Consensus       212 ~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~-~~~~~V~T~~G-~i~A~~VVvaAG~~S~-~La~~~Gi~  283 (497)
T PTZ00383        212 KLSESFVKHARRDALVPGKKISINLNTEVLNIERSN-DSLYKIHTNRG-EIRARFVVVSACGYSL-LFAQKMGYG  283 (497)
T ss_pred             HHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecC-CCeEEEEECCC-EEEeCEEEECcChhHH-HHHHHhCCC
Confidence            566777777777    67  8899999999998643 33446777777 5999999999997754 566666653

>PRK08244 hypothetical protein; Provisional

Probab=98.48  E-value=5.6e-07  Score=93.13  Aligned_cols=120  Identities=18%  Similarity=0.347  Sum_probs=70.2

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-CCC--------------CCCCccc-----------cCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP-YER--------------PALTKGY-----------LFPL  104 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~-~~~--------------~~l~~~~-----------~~~~  104 (488)
                      +++|+||||||+|+++|..|++.|+   +|+|||+.+... ..+              -.+...+           +...
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~G~---~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~   78 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALAGV---KTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGL   78 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecc
Confidence            4799999999999999999999988   899999986431 111              0000000           0000


Q ss_pred             CCCCCCCCCccc-------ccCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcE--EEeC--CC-cEEEeccEEeccCC
Q 011351          105 DKKPARLPGFHT-------CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQT--LITN--SG-KLLKYGSLIVATGC  172 (488)
Q Consensus       105 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~--v~~~--~g-~~i~yd~lVlAtG~  172 (488)
                      . ....+.....       .........+.+.+++.+++++.+++++++..+...  +++.  +| +++.+|+||.|.|.
T Consensus        79 ~-~~~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~  157 (493)
T PRK08244         79 D-TRLDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGA  157 (493)
T ss_pred             c-ccCCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCC
Confidence            0 0000000000       000000011122345568999999999998765543  3443  45 47999999999998


Q ss_pred             CC
Q 011351          173 TA  174 (488)
Q Consensus       173 ~~  174 (488)
                      ..
T Consensus       158 ~S  159 (493)
T PRK08244        158 GS  159 (493)
T ss_pred             Ch
Confidence            65

>TIGR02731 phytoene_desat phytoene desaturase

Probab=98.47  E-value=1.9e-06  Score=88.28  Aligned_cols=57  Identities=23%  Similarity=0.311  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCc-----EEEcCEEEEeecC
Q 011351          249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-----TIDADTIVIGIGA  305 (488)
Q Consensus       249 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~-----~i~~D~vi~a~G~  305 (488)
                      ..+.+.+.+.+++.|.+|++++.|++|...++++++++.+.+|+     ++.+|.||+++..
T Consensus       213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~  274 (453)
T TIGR02731       213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPV  274 (453)
T ss_pred             HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence            45667778888889999999999999986556767778887665     7999999999864

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=98.46  E-value=5e-06  Score=83.14  Aligned_cols=65  Identities=20%  Similarity=0.361  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcCC
Q 011351          249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL  317 (488)
Q Consensus       249 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl  317 (488)
                      ..+...+.+.+++.|++++.+++|++++.+ ++.+ .|.+.++ ++.+|.||+|+|.... .+++.+++
T Consensus       145 ~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~-~~~~-~v~~~~~-~i~a~~vV~aaG~~~~-~l~~~~g~  209 (380)
T TIGR01377       145 EKALRALQELAEAHGATVRDGTKVVEIEPT-ELLV-TVKTTKG-SYQANKLVVTAGAWTS-KLLSPLGI  209 (380)
T ss_pred             HHHHHHHHHHHHHcCCEEECCCeEEEEEec-CCeE-EEEeCCC-EEEeCEEEEecCcchH-HHhhhccc
Confidence            356667777788899999999999999864 3433 4666666 6999999999997543 45554443

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>TIGR00292 thiazole biosynthesis enzyme

Probab=98.46  E-value=1.5e-05  Score=74.33  Aligned_cols=139  Identities=19%  Similarity=0.237  Sum_probs=92.4

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc----------cc---------------------------cCH
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------RL---------------------------FTP  249 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~----------~~---------------------------~~~  249 (488)
                      .-.++|||+|+.|+-+|..|++.|.+|.++++.+.+-.          ..                           ...
T Consensus        21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~  100 (254)
T TIGR00292        21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSA  100 (254)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHH
Confidence            34699999999999999999999999999998754310          00                           012


Q ss_pred             HHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCC-cEEEEEeCC-----------CcEEEcCEEEEeecCccCC-hhh-hhc
Q 011351          250 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG-RVAAVKLED-----------GSTIDADTIVIGIGAKPTV-SPF-ERV  315 (488)
Q Consensus       250 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~-~v~~v~l~~-----------g~~i~~D~vi~a~G~~p~~-~~~-~~~  315 (488)
                      ++.+.+.+...+.|++++.++.+.++...++. ++.++.+..           ..++.++.||.|||..... .++ +..
T Consensus       101 el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l~~~~  180 (254)
T TIGR00292       101 EFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVCAKKI  180 (254)
T ss_pred             HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHHHHHc
Confidence            34455666677889999999999998865442 577776642           2478999999999976532 232 333


Q ss_pred             CCcccC------CCEEeCC--C---CCC--CCCCEEEEceecc
Q 011351          316 GLNSSV------GGIQVDG--Q---FRT--RMPGIFAIGDVAA  345 (488)
Q Consensus       316 gl~~~~------g~i~vd~--~---~~t--~~~~Ifa~GD~a~  345 (488)
                      ++....      +....+.  .   -.|  -+|++|++|=.+.
T Consensus       181 ~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~~~~g~~~~gm~~~  223 (254)
T TIGR00292       181 VLEDQVPKLGGEKSMWAEVAEVAIHENTREVVPNLYVAGMAVA  223 (254)
T ss_pred             CcccCCcccCCchhhhhhhhHHHHHhccCcccCCEEEechhhh
Confidence            322110      1111110  0   013  4899999997775

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=98.45  E-value=9.1e-06  Score=76.07  Aligned_cols=101  Identities=23%  Similarity=0.252  Sum_probs=75.8

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc-------------------------------------ccCHH
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-------------------------------------LFTPS  250 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~-------------------------------------~~~~~  250 (488)
                      ..|+|||+|+.|+-+|..|++.|.+|.++++.+.+-..                                     .....
T Consensus        26 ~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~~  105 (257)
T PRK04176         26 VDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSVE  105 (257)
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHHH
Confidence            57999999999999999999999999999987543210                                     00123


Q ss_pred             HHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC-----------CCcEEEcCEEEEeecCccC
Q 011351          251 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-----------DGSTIDADTIVIGIGAKPT  308 (488)
Q Consensus       251 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~-----------~g~~i~~D~vi~a~G~~p~  308 (488)
                      +...+.+..++.|++++.++.+..+...+++++.++...           +..++.++.||.|+|....
T Consensus       106 l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~  174 (257)
T PRK04176        106 AAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAE  174 (257)
T ss_pred             HHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcH
Confidence            445566667788999999999999876545466666543           2247999999999997653

>PRK07045 putative monooxygenase; Reviewed

Probab=98.43  E-value=5e-07  Score=90.62  Aligned_cols=122  Identities=16%  Similarity=0.220  Sum_probs=72.2

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC-CC-CCCc---ccc----------------------
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE-RP-ALTK---GYL----------------------  101 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~-~~-~l~~---~~~----------------------  101 (488)
                      +.+++|+||||||||+++|..|++.|+   +|+|+|+.+..... +. .+..   ..+                      
T Consensus         3 ~~~~~V~IiGgGpaGl~~A~~L~~~G~---~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~   79 (388)
T PRK07045          3 NNPVDVLINGSGIAGVALAHLLGARGH---SVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRL   79 (388)
T ss_pred             CceeEEEEECCcHHHHHHHHHHHhcCC---cEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEE
Confidence            456899999999999999999999998   89999998754210 00 0000   000                      


Q ss_pred             CCCCCCCCCCCCcccccCCCCCC-----CCHhHH----H-HCCCeEEeCCcEEEEeCCC-c---EEEeCCCcEEEeccEE
Q 011351          102 FPLDKKPARLPGFHTCVGSGGER-----QTPEWY----K-EKGIEMIYQDPVTSIDIEK-Q---TLITNSGKLLKYGSLI  167 (488)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~----~-~~~i~~~~~~~v~~id~~~-~---~v~~~~g~~i~yd~lV  167 (488)
                      .........+. +.......+..     .+.+.+    . ..+++++++++|+++..+. .   .|++++|+++.+|.||
T Consensus        80 ~~~g~~~~~~~-~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vI  158 (388)
T PRK07045         80 YHDKELIASLD-YRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLV  158 (388)
T ss_pred             ecCCcEEEEec-CCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEE
Confidence            00000000000 00000000000     011111    1 2478999999999987643 2   4777888899999999


Q ss_pred             eccCCCC
Q 011351          168 VATGCTA  174 (488)
Q Consensus       168 lAtG~~~  174 (488)
                      -|.|...
T Consensus       159 gADG~~S  165 (388)
T PRK07045        159 GADGARS  165 (388)
T ss_pred             ECCCCCh
Confidence            9999865

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=98.43  E-value=1.5e-06  Score=86.50  Aligned_cols=109  Identities=19%  Similarity=0.324  Sum_probs=70.5

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc-------------------------------------------
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-------------------------------------------  245 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~-------------------------------------------  245 (488)
                      +|+|||+|+.|+-+|..+++.|.+|.++++.+++..+                                           
T Consensus         2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~d   81 (409)
T PF03486_consen    2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPED   81 (409)
T ss_dssp             SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HHH
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHHH
Confidence            5899999999999999999999999999998332111                                           


Q ss_pred             -----------------------c-cCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEE
Q 011351          246 -----------------------L-FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI  301 (488)
Q Consensus       246 -----------------------~-~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~  301 (488)
                                             . -..++.+.+.+.+++.||+++++++|.+++.. ++.+..|.+++++++.||.||+
T Consensus        82 ~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~-~~~~f~v~~~~~~~~~a~~vIL  160 (409)
T PF03486_consen   82 LIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKK-EDGVFGVKTKNGGEYEADAVIL  160 (409)
T ss_dssp             HHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEE-TTEEEEEEETTTEEEEESEEEE
T ss_pred             HHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeec-CCceeEeeccCcccccCCEEEE
Confidence                                   0 01235567788889999999999999999865 4455578887788999999999


Q ss_pred             eecCccCC---------hhhhhcCCc
Q 011351          302 GIGAKPTV---------SPFERVGLN  318 (488)
Q Consensus       302 a~G~~p~~---------~~~~~~gl~  318 (488)
                      |+|-....         .+++++|..
T Consensus       161 AtGG~S~p~~GS~G~gy~~a~~lGh~  186 (409)
T PF03486_consen  161 ATGGKSYPKTGSDGSGYRIAKKLGHT  186 (409)
T ss_dssp             ----SSSGGGT-SSHHHHHHHHTT--
T ss_pred             ecCCCCccccCCCcHHHHHHHHCCCc
Confidence            99965432         246676654

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PRK07233 hypothetical protein; Provisional

Probab=98.43  E-value=8.4e-07  Score=90.40  Aligned_cols=56  Identities=18%  Similarity=0.294  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCc
Q 011351          249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  306 (488)
Q Consensus       249 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~  306 (488)
                      ..+.+.+.+.+++.|++++++++|++|+.+ ++.+..+. .+++++.+|.||+|++..
T Consensus       198 ~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~-~~~~~~~~-~~~~~~~ad~vI~a~p~~  253 (434)
T PRK07233        198 ATLIDALAEAIEARGGEIRLGTPVTSVVID-GGGVTGVE-VDGEEEDFDAVISTAPPP  253 (434)
T ss_pred             HHHHHHHHHHHHhcCceEEeCCCeeEEEEc-CCceEEEE-eCCceEECCEEEECCCHH
Confidence            456777888888899999999999999865 34443333 567789999999998753

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.43  E-value=8.4e-07  Score=88.81  Aligned_cols=122  Identities=14%  Similarity=0.258  Sum_probs=71.4

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC--------CCCc---cc-----cCCCC----CCCC-
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP--------ALTK---GY-----LFPLD----KKPA-  109 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~--------~l~~---~~-----~~~~~----~~~~-  109 (488)
                      .+||+|||||++|+++|..|++.|+   +|+|||+.+...+...        .++.   ..     +...-    ..+. 
T Consensus         3 ~~dv~IvGgG~aGl~~A~~L~~~G~---~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~   79 (384)
T PRK08849          3 KYDIAVVGGGMVGAATALGFAKQGR---SVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYK   79 (384)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCC---cEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccc
Confidence            4799999999999999999999988   8999998752221110        0100   00     00000    0000 


Q ss_pred             ------CCCC---cc--cccCCC--CC--CC-CH----hHHHH-CCCeEEeCCcEEEEeCCC--cEEEeCCCcEEEeccE
Q 011351          110 ------RLPG---FH--TCVGSG--GE--RQ-TP----EWYKE-KGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSL  166 (488)
Q Consensus       110 ------~~~~---~~--~~~~~~--~~--~~-~~----~~~~~-~~i~~~~~~~v~~id~~~--~~v~~~~g~~i~yd~l  166 (488)
                            ....   +.  ......  +.  +. +.    +.+.. .+++++.+++|++++.+.  .++++++|.++.+|.|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lv  159 (384)
T PRK08849         80 RLETWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWV  159 (384)
T ss_pred             eEEEEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEE
Confidence                  0000   00  000000  00  00 00    11122 368999999999987644  3678889999999999


Q ss_pred             EeccCCCCC
Q 011351          167 IVATGCTAS  175 (488)
Q Consensus       167 VlAtG~~~~  175 (488)
                      |.|+|....
T Consensus       160 IgADG~~S~  168 (384)
T PRK08849        160 IGADGANSQ  168 (384)
T ss_pred             EEecCCCch
Confidence            999998654

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=98.42  E-value=9.5e-07  Score=89.73  Aligned_cols=98  Identities=21%  Similarity=0.314  Sum_probs=74.7

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (488)
                      .++|+|||||++|+.+|..|++.|.   +|+++++.+....  +.+.           ..+           .....+.+
T Consensus       137 ~~~vvViGgG~~g~e~A~~l~~~g~---~Vtli~~~~~~~~--~~~~-----------~~~-----------~~~~~~~l  189 (427)
T TIGR03385       137 VENVVIIGGGYIGIEMAEALRERGK---NVTLIHRSERILN--KLFD-----------EEM-----------NQIVEEEL  189 (427)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC---cEEEEECCcccCc--cccC-----------HHH-----------HHHHHHHH
Confidence            4799999999999999999999876   7999998754200  0000           000           11235667


Q ss_pred             HHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCC
Q 011351          131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS  175 (488)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~  175 (488)
                      ++.|++++.++.+.+++.+...+.+.+|+++.+|.|++|+|..+.
T Consensus       190 ~~~gV~v~~~~~v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  234 (427)
T TIGR03385       190 KKHEINLRLNEEVDSIEGEERVKVFTSGGVYQADMVILATGIKPN  234 (427)
T ss_pred             HHcCCEEEeCCEEEEEecCCCEEEEcCCCEEEeCEEEECCCccCC
Confidence            888999999999999988766556678888999999999998765

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=98.42  E-value=7.5e-06  Score=79.53  Aligned_cols=93  Identities=18%  Similarity=0.267  Sum_probs=68.3

Q ss_pred             HHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecC
Q 011351          226 AVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  305 (488)
Q Consensus       226 l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~  305 (488)
                      ....+....++....+.+.....+.+.+-+.+.+++.|++++++++|..++.. ++.+..+.+++|+++++|.||+|+|.
T Consensus       150 ~~aa~a~~eil~~~~rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~-~~~~~~v~~~~g~~i~~~~vvlA~Gr  228 (486)
T COG2509         150 FRAAGAGEEILPIYQRHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIE-DNEVLGVKLTKGEEIEADYVVLAPGR  228 (486)
T ss_pred             HHHhCCCceeeeccccccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEec-CCceEEEEccCCcEEecCEEEEccCc
Confidence            34445555444433333333345678888999999999999999999999864 45567899999999999999999999


Q ss_pred             ccCChhh----hhcCCccc
Q 011351          306 KPTVSPF----ERVGLNSS  320 (488)
Q Consensus       306 ~p~~~~~----~~~gl~~~  320 (488)
                      ... +|+    +..|+...
T Consensus       229 sg~-dw~~~l~~K~Gv~~~  246 (486)
T COG2509         229 SGR-DWFEMLHKKLGVKMR  246 (486)
T ss_pred             chH-HHHHHHHHhcCcccc
Confidence            876 443    44455543

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=98.42  E-value=5.8e-06  Score=83.47  Aligned_cols=57  Identities=19%  Similarity=0.372  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCcc
Q 011351          250 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  307 (488)
Q Consensus       250 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p  307 (488)
                      .+...+.+.+++.|++++.+++|++++..+++.+..|.+.+| ++.+|.||+|+|...
T Consensus       184 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~  240 (407)
T TIGR01373       184 AVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHS  240 (407)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhh
Confidence            455556677889999999999999997544456666777777 599999988877644

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PLN02697 lycopene epsilon cyclase

Probab=98.41  E-value=7.3e-07  Score=91.60  Aligned_cols=119  Identities=13%  Similarity=0.191  Sum_probs=68.3

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCC-CCccccC--CCCC-CCCCCC--------Ccccc
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA-LTKGYLF--PLDK-KPARLP--------GFHTC  117 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~-l~~~~~~--~~~~-~~~~~~--------~~~~~  117 (488)
                      ..+||+|||||+||+++|..|++.|+   +|+|||+...  +.... .+...+.  .... ....++        +....
T Consensus       107 ~~~DVvIVGaGPAGLalA~~Lak~Gl---~V~LIe~~~p--~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~  181 (529)
T PLN02697        107 GTLDLVVIGCGPAGLALAAESAKLGL---NVGLIGPDLP--FTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIM  181 (529)
T ss_pred             CcccEEEECcCHHHHHHHHHHHhCCC---cEEEecCccc--CCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceee
Confidence            35899999999999999999999987   8999998532  21110 0000000  0000 000000        00000


Q ss_pred             cCCCCC--------CCCHhHHHHCCCeEEeCCcEEEEeCCCc--E-EEeCCCcEEEeccEEeccCCCC
Q 011351          118 VGSGGE--------RQTPEWYKEKGIEMIYQDPVTSIDIEKQ--T-LITNSGKLLKYGSLIVATGCTA  174 (488)
Q Consensus       118 ~~~~~~--------~~~~~~~~~~~i~~~~~~~v~~id~~~~--~-v~~~~g~~i~yd~lVlAtG~~~  174 (488)
                      .+..+.        ..+.+.+.+.+++++ +++|+++..+..  . +++.+|.++.++.||.|+|...
T Consensus       182 ~~~~Yg~V~R~~L~~~Ll~~a~~~GV~~~-~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S  248 (529)
T PLN02697        182 IGRAYGRVSRTLLHEELLRRCVESGVSYL-SSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS  248 (529)
T ss_pred             ccCcccEEcHHHHHHHHHHHHHhcCCEEE-eeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence            001110        011222345689884 578998875433  2 4557788899999999999876

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=98.41  E-value=1e-06  Score=92.13  Aligned_cols=37  Identities=22%  Similarity=0.329  Sum_probs=33.7

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      +.+++|+|||||++|+++|..|++.|+   +|+|||+.+.
T Consensus         8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~---~v~v~Er~~~   44 (538)
T PRK06183          8 AHDTDVVIVGAGPVGLTLANLLGQYGV---RVLVLERWPT   44 (538)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCC
Confidence            456899999999999999999999988   8999999864

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=98.41  E-value=1.2e-06  Score=87.76  Aligned_cols=37  Identities=24%  Similarity=0.442  Sum_probs=33.5

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   89 (488)
                      ++++|+|||||+||+++|..|++.|+   +|+|+|+.+..
T Consensus         4 ~~~dv~IvGgG~aGl~~A~~L~~~G~---~v~v~E~~~~~   40 (388)
T PRK07608          4 MKFDVVVVGGGLVGASLALALAQSGL---RVALLAPRAPP   40 (388)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCC---eEEEEecCCCc
Confidence            46799999999999999999999987   89999998763

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=98.41  E-value=1e-05  Score=83.14  Aligned_cols=64  Identities=22%  Similarity=0.338  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC--CC--cEEEcCEEEEeecC-ccCChhhh
Q 011351          249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--DG--STIDADTIVIGIGA-KPTVSPFE  313 (488)
Q Consensus       249 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~--~g--~~i~~D~vi~a~G~-~p~~~~~~  313 (488)
                      ..+...+.+.+++.|++++++++++++..+ ++++.++...  ++  ..+.++.||+|+|- ..+.++++
T Consensus       131 ~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~-~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~n~~~~~  199 (466)
T PRK08274        131 KALVNALYRSAERLGVEIRYDAPVTALELD-DGRFVGARAGSAAGGAERIRAKAVVLAAGGFESNREWLR  199 (466)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCeEEEEEEEccCCceEEEECCEEEECCCCCCCCHHHHH
Confidence            456677778888999999999999999864 5777777653  33  35899999999984 33333333

>PLN02612 phytoene desaturase

Probab=98.41  E-value=6.4e-06  Score=86.26  Aligned_cols=57  Identities=25%  Similarity=0.327  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecC
Q 011351          249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  305 (488)
Q Consensus       249 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~  305 (488)
                      ..+.+.+.+.+++.|.+|++++.|++|+.++++.+..+.+.+|+++.+|.||++++.
T Consensus       308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~  364 (567)
T PLN02612        308 ERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPV  364 (567)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCH
Confidence            456677888888899999999999999876667676788889999999999999763

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=98.40  E-value=3e-06  Score=76.67  Aligned_cols=96  Identities=21%  Similarity=0.350  Sum_probs=67.2

Q ss_pred             EEECCCHHHHHHHHHHHhCCCc-EEEEecCCcCcc--------------c----------------------------cc
Q 011351          211 VVVGGGYIGMEVAAAAVGWKLD-TTIIFPENHLLQ--------------R----------------------------LF  247 (488)
Q Consensus       211 vVvG~G~~g~e~A~~l~~~g~~-v~lv~~~~~~l~--------------~----------------------------~~  247 (488)
                      +|||+|+.|+-+|..|.+.|.+ ++++++.+.+..              .                            ..
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS   80 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence            6999999999999999999998 999998732211              0                            00


Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecC--ccC
Q 011351          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA--KPT  308 (488)
Q Consensus       248 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~--~p~  308 (488)
                      .+++.++++...++.++++.++++|++++.++++  ..|.+.+++++.||.||+|+|.  .|.
T Consensus        81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~--w~v~~~~~~~~~a~~VVlAtG~~~~p~  141 (203)
T PF13738_consen   81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDG--WTVTTRDGRTIRADRVVLATGHYSHPR  141 (203)
T ss_dssp             HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTT--EEEEETTS-EEEEEEEEE---SSCSB-
T ss_pred             HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccE--EEEEEEecceeeeeeEEEeeeccCCCC
Confidence            1235577888889999999999999999987555  4688899988999999999997  454

...

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.40  E-value=1.1e-06  Score=88.55  Aligned_cols=45  Identities=13%  Similarity=0.283  Sum_probs=36.1

Q ss_pred             HHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCCC
Q 011351          131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  175 (488)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~~  175 (488)
                      .+.+++++.++++++++.+..  .|++.+|+++.+|.||.|.|....
T Consensus       123 ~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S~  169 (405)
T PRK05714        123 HDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANSA  169 (405)
T ss_pred             hcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCch
Confidence            445899999999999876543  466788888999999999998653

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.40  E-value=2.5e-06  Score=85.75  Aligned_cols=99  Identities=25%  Similarity=0.362  Sum_probs=73.1

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC--cEEEEecCCcCcc-c-ccCHHHH---------HHHHHHHHHcCcEEEcCCeEE
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHLLQ-R-LFTPSLA---------QRYEQLYQQNGVKFVKGASIK  273 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~--~v~lv~~~~~~l~-~-~~~~~~~---------~~~~~~l~~~GV~v~~~~~v~  273 (488)
                      .++++|||+|+.|+.+|..|++.+.  +|+++.+.+.+.. + .+...+.         ..-.+.+.+.||+++.++.|.
T Consensus         3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~   82 (396)
T PRK09754          3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIK   82 (396)
T ss_pred             cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEE
Confidence            4689999999999999999999876  6899987654311 1 1111110         011244677899999999999


Q ss_pred             EEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCC
Q 011351          274 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  309 (488)
Q Consensus       274 ~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~  309 (488)
                      .++.. ..   .+.+++|+++.+|.+|+|||.+|..
T Consensus        83 ~id~~-~~---~v~~~~g~~~~yd~LViATGs~~~~  114 (396)
T PRK09754         83 TLGRD-TR---ELVLTNGESWHWDQLFIATGAAARP  114 (396)
T ss_pred             EEECC-CC---EEEECCCCEEEcCEEEEccCCCCCC
Confidence            99753 22   4677889899999999999999853

>PRK05868 hypothetical protein; Validated

Probab=98.40  E-value=1.1e-06  Score=87.47  Aligned_cols=121  Identities=17%  Similarity=0.193  Sum_probs=71.4

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC------C---------CCCCccc-----------cCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE------R---------PALTKGY-----------LFPL  104 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~------~---------~~l~~~~-----------~~~~  104 (488)
                      +++|+|||||++|+++|..|++.|+   +|+|+|+.+.....      +         ..+...+           +...
T Consensus         1 ~~~V~IvGgG~aGl~~A~~L~~~G~---~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~   77 (372)
T PRK05868          1 MKTVVVSGASVAGTAAAYWLGRHGY---SVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDR   77 (372)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC---CEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeC
Confidence            4689999999999999999999988   89999998653210      0         0000000           0000


Q ss_pred             CCCC-CCCCCcccccCCC-----CCC---CCHhHHH---HCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEecc
Q 011351          105 DKKP-ARLPGFHTCVGSG-----GER---QTPEWYK---EKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVAT  170 (488)
Q Consensus       105 ~~~~-~~~~~~~~~~~~~-----~~~---~~~~~~~---~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAt  170 (488)
                      .... ..... ....+..     ...   .+.+.+.   ..+++++++++|++++.+..  ++++++|+++.+|.||-|.
T Consensus        78 ~g~~~~~~~~-~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgAD  156 (372)
T PRK05868         78 DGNELFRDTE-STPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGAD  156 (372)
T ss_pred             CCCEEeeccc-ccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECC
Confidence            0000 00000 0000000     000   1112212   35789999999999876544  5677889899999999999


Q ss_pred             CCCCC
Q 011351          171 GCTAS  175 (488)
Q Consensus       171 G~~~~  175 (488)
                      |....
T Consensus       157 G~~S~  161 (372)
T PRK05868        157 GLHSN  161 (372)
T ss_pred             CCCch
Confidence            97653

>PRK08013 oxidoreductase; Provisional

Probab=98.39  E-value=6.2e-07  Score=90.24  Aligned_cols=123  Identities=16%  Similarity=0.196  Sum_probs=72.0

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC-------CC-CCCc---------cccCC---CCCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE-------RP-ALTK---------GYLFP---LDKKPA  109 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~-------~~-~l~~---------~~~~~---~~~~~~  109 (488)
                      +++||+||||||+|+++|..|++.|+   +|+|+|+.+...-.       |. .++.         +.+..   ....+.
T Consensus         2 ~~~dV~IvGaGpaGl~~A~~La~~G~---~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~   78 (400)
T PRK08013          2 QSVDVVIAGGGMVGLAVACGLQGSGL---RVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCY   78 (400)
T ss_pred             CcCCEEEECcCHHHHHHHHHHhhCCC---EEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccc
Confidence            35799999999999999999999988   89999998752110       00 0000         00000   000000


Q ss_pred             C-C-------CCcccc----cCCCCC---C---C----CHhHHHH-CCCeEEeCCcEEEEeCCC--cEEEeCCCcEEEec
Q 011351          110 R-L-------PGFHTC----VGSGGE---R---Q----TPEWYKE-KGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYG  164 (488)
Q Consensus       110 ~-~-------~~~~~~----~~~~~~---~---~----~~~~~~~-~~i~~~~~~~v~~id~~~--~~v~~~~g~~i~yd  164 (488)
                      + +       .+....    .+....   .   .    +.+.... .+++++.+++|++++.+.  -++++.+|+++.+|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~  158 (400)
T PRK08013         79 HGMEVWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTAR  158 (400)
T ss_pred             cEEEEEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEee
Confidence            0 0       000000    000000   0   0    0111233 279999999999986554  35667788899999


Q ss_pred             cEEeccCCCCC
Q 011351          165 SLIVATGCTAS  175 (488)
Q Consensus       165 ~lVlAtG~~~~  175 (488)
                      .||-|.|....
T Consensus       159 lvVgADG~~S~  169 (400)
T PRK08013        159 LVVGADGANSW  169 (400)
T ss_pred             EEEEeCCCCcH
Confidence            99999997653

>PRK08163 salicylate hydroxylase; Provisional

Probab=98.39  E-value=6.9e-07  Score=89.87  Aligned_cols=123  Identities=19%  Similarity=0.234  Sum_probs=71.3

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC--CCC-------------ccc-----------cCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP--ALT-------------KGY-----------LFP  103 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~--~l~-------------~~~-----------~~~  103 (488)
                      ++.+|+|||||++|+++|..|++.|+   +|+|+|+.+...-...  .+.             ...           +..
T Consensus         3 ~~~~V~IvGaGiaGl~~A~~L~~~g~---~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~   79 (396)
T PRK08163          3 KVTPVLIVGGGIGGLAAALALARQGI---KVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMD   79 (396)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhCCC---cEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEe
Confidence            45799999999999999999999988   8999999874321000  000             000           000


Q ss_pred             --CCCCCCCCC--C-cccccCCCCC--C------CCHhHHHHC-CCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEE
Q 011351          104 --LDKKPARLP--G-FHTCVGSGGE--R------QTPEWYKEK-GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLI  167 (488)
Q Consensus       104 --~~~~~~~~~--~-~~~~~~~~~~--~------~~~~~~~~~-~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lV  167 (488)
                        .......++  . +....+....  .      .+.+.+.+. +++++.++++++++.+..  .+++.+|+++.+|.||
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV  159 (396)
T PRK08163         80 AVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALI  159 (396)
T ss_pred             CCCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEE
Confidence              000000000  0 0000000000  0      011112233 488999999999986544  4666788889999999


Q ss_pred             eccCCCCC
Q 011351          168 VATGCTAS  175 (488)
Q Consensus       168 lAtG~~~~  175 (488)
                      .|.|....
T Consensus       160 ~AdG~~S~  167 (396)
T PRK08163        160 GCDGVKSV  167 (396)
T ss_pred             ECCCcChH
Confidence            99998654

>PRK06126 hypothetical protein; Provisional

Probab=98.38  E-value=1.7e-06  Score=90.85  Aligned_cols=38  Identities=21%  Similarity=0.284  Sum_probs=34.2

Q ss_pred             CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      .+..++|+|||||++|+++|..|+++|+   +|+|+|+.+.
T Consensus         4 ~~~~~~VlIVGaGpaGL~~Al~La~~G~---~v~viEr~~~   41 (545)
T PRK06126          4 NTSETPVLIVGGGPVGLALALDLGRRGV---DSILVERKDG   41 (545)
T ss_pred             CCccCCEEEECCCHHHHHHHHHHHHCCC---cEEEEeCCCC
Confidence            4456899999999999999999999998   8999999864

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.38  E-value=8.7e-07  Score=89.73  Aligned_cols=38  Identities=21%  Similarity=0.399  Sum_probs=34.0

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   89 (488)
                      ..++||+|||||+||+++|..|++.|+   +|+|+|+.+..
T Consensus        16 ~~~~dV~IvGaG~aGl~~A~~L~~~G~---~v~v~E~~~~~   53 (415)
T PRK07364         16 SLTYDVAIVGGGIVGLTLAAALKDSGL---RIALIEAQPAE   53 (415)
T ss_pred             ccccCEEEECcCHHHHHHHHHHhcCCC---EEEEEecCCcc
Confidence            346899999999999999999999988   89999998753

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=98.38  E-value=8.8e-07  Score=88.67  Aligned_cols=121  Identities=15%  Similarity=0.127  Sum_probs=71.4

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC--CCCC--------------CCC------------CccccC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA--PYER--------------PAL------------TKGYLF  102 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~--~~~~--------------~~l------------~~~~~~  102 (488)
                      +++|+|||||++|+++|..|++.|+   +|+|||+.+..  ...+              -.+            ......
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G~---~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~   78 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAGL---DVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVD   78 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCC---cEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEe
Confidence            5799999999999999999999998   89999998211  0000              000            000000


Q ss_pred             CCCC--CCCCCCCcc-----c-ccCCCCCCCCHhHHHHC-CCeEEeCCcEEEEeCCCc--EEEeC-CCcEEEeccEEecc
Q 011351          103 PLDK--KPARLPGFH-----T-CVGSGGERQTPEWYKEK-GIEMIYQDPVTSIDIEKQ--TLITN-SGKLLKYGSLIVAT  170 (488)
Q Consensus       103 ~~~~--~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~-~i~~~~~~~v~~id~~~~--~v~~~-~g~~i~yd~lVlAt  170 (488)
                      ....  ...+.....     . ..-......+.+...+. +++++.+++|+.++.+..  ++++. +|+++.+|.||-|-
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgAD  158 (387)
T COG0654          79 DGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGAD  158 (387)
T ss_pred             cCCceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECC
Confidence            0000  000000000     0 00000000111223333 489999999999987653  57777 99999999999999


Q ss_pred             CCCC
Q 011351          171 GCTA  174 (488)
Q Consensus       171 G~~~  174 (488)
                      |...
T Consensus       159 G~~S  162 (387)
T COG0654         159 GANS  162 (387)
T ss_pred             CCch
Confidence            9754

>PRK06185 hypothetical protein; Provisional

Probab=98.37  E-value=1.7e-06  Score=87.41  Aligned_cols=38  Identities=26%  Similarity=0.388  Sum_probs=34.0

Q ss_pred             CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      ..+++||+|||||++|+++|..|++.|+   +|+|||+.+.
T Consensus         3 ~~~~~dV~IvGgG~~Gl~~A~~La~~G~---~v~liE~~~~   40 (407)
T PRK06185          3 EVETTDCCIVGGGPAGMMLGLLLARAGV---DVTVLEKHAD   40 (407)
T ss_pred             ccccccEEEECCCHHHHHHHHHHHhCCC---cEEEEecCCc
Confidence            4457899999999999999999999987   8999999764

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=98.37  E-value=1.2e-06  Score=88.44  Aligned_cols=42  Identities=17%  Similarity=0.266  Sum_probs=34.7

Q ss_pred             CCeEEeCCcEEEEeCCC--cEEEeCCCcEEEeccEEeccCCCCC
Q 011351          134 GIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTAS  175 (488)
Q Consensus       134 ~i~~~~~~~v~~id~~~--~~v~~~~g~~i~yd~lVlAtG~~~~  175 (488)
                      +++++.+++|++++.++  ..+++++|+++.+|.||.|.|....
T Consensus       126 ~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S~  169 (405)
T PRK08850        126 NVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANSW  169 (405)
T ss_pred             CeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCCh
Confidence            68999999999986544  3577788989999999999997653

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.36  E-value=6.3e-07  Score=92.12  Aligned_cols=57  Identities=23%  Similarity=0.411  Sum_probs=48.0

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecC
Q 011351          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  305 (488)
Q Consensus       248 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~  305 (488)
                      ...+.+.+.+.+++.|++|+++++|++|..+ +++.+.+...+|+.+++|.||.....
T Consensus       223 ~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~-~g~g~~~~~~~g~~~~ad~vv~~~~~  279 (487)
T COG1233         223 MGALVDALAELAREHGGEIRTGAEVSQILVE-GGKGVGVRTSDGENIEADAVVSNADP  279 (487)
T ss_pred             HHHHHHHHHHHHHHcCCEEECCCceEEEEEe-CCcceEEeccccceeccceeEecCch
Confidence            3467888999999999999999999999864 55556788888878999999998776

>PRK07588 hypothetical protein; Provisional

Probab=98.36  E-value=2.3e-06  Score=85.86  Aligned_cols=121  Identities=18%  Similarity=0.230  Sum_probs=70.1

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC-C-CCC-Ccc--------c----c-----------C-CC
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE-R-PAL-TKG--------Y----L-----------F-PL  104 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~-~-~~l-~~~--------~----~-----------~-~~  104 (488)
                      .+|+|||||++|+++|..|++.|+   +|+|+|+.+...-. + ..+ ..+        .    .           . ..
T Consensus         1 ~~V~IVGgG~aGl~~A~~L~~~G~---~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~   77 (391)
T PRK07588          1 MKVAISGAGIAGPTLAYWLRRYGH---EPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPT   77 (391)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCC---ceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCC
Confidence            479999999999999999999988   89999998643100 0 000 000        0    0           0 00


Q ss_pred             CCCCCCCC--CcccccCCCCCCC----CHhHH---HHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCC
Q 011351          105 DKKPARLP--GFHTCVGSGGERQ----TPEWY---KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCT  173 (488)
Q Consensus       105 ~~~~~~~~--~~~~~~~~~~~~~----~~~~~---~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~  173 (488)
                      ......+.  .+....+..+...    +.+.+   ...+++++.+++|++++.+..  ++++++|+.+.+|.||-|.|..
T Consensus        78 g~~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~  157 (391)
T PRK07588         78 GRRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLH  157 (391)
T ss_pred             CCEEEEecHHHccccCCCceEEEEHHHHHHHHHHhhhcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCC
Confidence            00000000  0000000000000    01111   123689999999999987654  4667889889999999999976


Q ss_pred             CC
Q 011351          174 AS  175 (488)
Q Consensus       174 ~~  175 (488)
                      ..
T Consensus       158 S~  159 (391)
T PRK07588        158 SH  159 (391)
T ss_pred             cc
Confidence            54

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=98.35  E-value=9.6e-07  Score=87.84  Aligned_cols=119  Identities=16%  Similarity=0.171  Sum_probs=68.0

Q ss_pred             eEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCC-----CCCCCCCc-------ccccCC
Q 011351           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDK-----KPARLPGF-------HTCVGS  120 (488)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~-------~~~~~~  120 (488)
                      ||+|||||+||+++|.+|++... +.+|+|||+++..++...... .++.....     ....+.+.       ......
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~-g~~Vllid~~~~~~~~~~~tW-~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~   78 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARP-GLSVLLIDPKPKPPWPNDRTW-CFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILID   78 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCC-CCEEEEEcCCccccccCCccc-ccccccccchHHHHheecCceEEEeCCCceEEcc
Confidence            79999999999999999954433 459999999876533211110 01100000     00000000       000000


Q ss_pred             -CC-CCC---CH----hHHHHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCC
Q 011351          121 -GG-ERQ---TP----EWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTA  174 (488)
Q Consensus       121 -~~-~~~---~~----~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~  174 (488)
                       .+ ...   +.    +.+...++ .+.++.|.+|+....  .+++.+|+++.++.||-|+|...
T Consensus        79 ~~Y~~i~~~~f~~~l~~~~~~~~~-~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~  142 (374)
T PF05834_consen   79 YPYCMIDRADFYEFLLERAAAGGV-IRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSS  142 (374)
T ss_pred             cceEEEEHHHHHHHHHHHhhhCCe-EEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCccc
Confidence             00 000   11    11222244 455689999988765  67888999999999999999554

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=98.35  E-value=4.7e-06  Score=86.24  Aligned_cols=65  Identities=18%  Similarity=0.302  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe--CCC--cEEEcCEEEEeec-CccCChhhhh
Q 011351          249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL--EDG--STIDADTIVIGIG-AKPTVSPFER  314 (488)
Q Consensus       249 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l--~~g--~~i~~D~vi~a~G-~~p~~~~~~~  314 (488)
                      ..+...+.+.+++.|+++++++.++++..+ ++++.++..  .++  .++.+|.||+|+| +..|.+++++
T Consensus       190 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~-~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n~~m~~~  259 (506)
T PRK06481        190 GYLVDGLLKNVQERKIPLFVNADVTKITEK-DGKVTGVKVKINGKETKTISSKAVVVTTGGFGANKDMIAK  259 (506)
T ss_pred             HHHHHHHHHHHHHcCCeEEeCCeeEEEEec-CCEEEEEEEEeCCCeEEEEecCeEEEeCCCcccCHHHHHH
Confidence            345666777788999999999999999854 577766655  343  3589999999997 6666555544

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=98.34  E-value=1.5e-06  Score=88.96  Aligned_cols=97  Identities=16%  Similarity=0.241  Sum_probs=71.8

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (488)
                      .++++|||||++|+.+|..|++.|.   +|+|+++.+...           ....   ..+           .....+.+
T Consensus       170 ~~~vvIIGgG~iG~E~A~~l~~~g~---~Vtli~~~~~ll-----------~~~d---~e~-----------~~~l~~~L  221 (458)
T PRK06912        170 PSSLLIVGGGVIGCEFASIYSRLGT---KVTIVEMAPQLL-----------PGED---EDI-----------AHILREKL  221 (458)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC---eEEEEecCCCcC-----------cccc---HHH-----------HHHHHHHH
Confidence            4689999999999999999999876   899999875421           0000   000           12245667


Q ss_pred             HHCCCeEEeCCcEEEEeCCCcEEEeC-CC--cEEEeccEEeccCCCCC
Q 011351          131 KEKGIEMIYQDPVTSIDIEKQTLITN-SG--KLLKYGSLIVATGCTAS  175 (488)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~~v~~~-~g--~~i~yd~lVlAtG~~~~  175 (488)
                      ++.+++++.+++|++++.+...+.+. ++  .++.||.|++|+|..|.
T Consensus       222 ~~~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~  269 (458)
T PRK06912        222 ENDGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPR  269 (458)
T ss_pred             HHCCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccC
Confidence            78899999999999998766554442 34  36899999999998875

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.34  E-value=1.9e-06  Score=85.99  Aligned_cols=99  Identities=16%  Similarity=0.339  Sum_probs=75.1

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      ..++|+|||||+.|+.+|..|++.+.   +|+++++.+...-       ..+      +...           .....+.
T Consensus       140 ~~~~vvViGgG~~g~e~A~~L~~~g~---~Vtlv~~~~~~l~-------~~~------~~~~-----------~~~l~~~  192 (377)
T PRK04965        140 DAQRVLVVGGGLIGTELAMDLCRAGK---AVTLVDNAASLLA-------SLM------PPEV-----------SSRLQHR  192 (377)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhcCC---eEEEEecCCcccc-------hhC------CHHH-----------HHHHHHH
Confidence            35789999999999999999999876   8999998764210       000      0000           0124566


Q ss_pred             HHHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCCC
Q 011351          130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  175 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~~  175 (488)
                      +++.+++++.++.+.+++.+..  .+.+.+|+++.+|.+|+|+|..|.
T Consensus       193 l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~  240 (377)
T PRK04965        193 LTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPN  240 (377)
T ss_pred             HHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcc
Confidence            7888999999999999987643  467788989999999999998775

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=98.33  E-value=2.7e-05  Score=78.57  Aligned_cols=61  Identities=18%  Similarity=0.318  Sum_probs=52.8

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  308 (488)
Q Consensus       248 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~  308 (488)
                      ..++.+.+.+.++..|.++++++.|++|..++++++.+|.+.+|+++.|+.||......|.
T Consensus       231 ~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~  291 (443)
T PTZ00363        231 LGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPD  291 (443)
T ss_pred             HHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcccccc
Confidence            3467788888889999999999999999876567777899999999999999998888776

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.32  E-value=9.2e-07  Score=88.93  Aligned_cols=43  Identities=16%  Similarity=0.315  Sum_probs=34.5

Q ss_pred             CCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCCC
Q 011351          133 KGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  175 (488)
Q Consensus       133 ~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~~  175 (488)
                      .+++++.+++|+++..++.  .++++++..+.+|.||.|.|....
T Consensus       126 ~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~  170 (395)
T PRK05732        126 PGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHSA  170 (395)
T ss_pred             CCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCChh
Confidence            4789998899999875543  566778888999999999997653

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.32  E-value=8.3e-06  Score=84.67  Aligned_cols=101  Identities=24%  Similarity=0.339  Sum_probs=79.6

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecC--CcCc-----------ccccCHHHHHHHHHHHHHcCcEEEcCCeE
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE--NHLL-----------QRLFTPSLAQRYEQLYQQNGVKFVKGASI  272 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~--~~~l-----------~~~~~~~~~~~~~~~l~~~GV~v~~~~~v  272 (488)
                      ...+++|||||+.|+.+|..+++.|.+|+++...  ..+.           +....+++.+.+.+.+++.|++++.+++|
T Consensus       211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~~V  290 (515)
T TIGR03140       211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRA  290 (515)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCCEE
Confidence            3468999999999999999999999999998642  1111           11234567788888889999999999999


Q ss_pred             EEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351          273 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  308 (488)
Q Consensus       273 ~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~  308 (488)
                      +++...++ . ..+.+++|+.+.+|.+|+|+|..|.
T Consensus       291 ~~I~~~~~-~-~~v~~~~g~~i~~d~lIlAtGa~~~  324 (515)
T TIGR03140       291 KKIETEDG-L-IVVTLESGEVLKAKSVIVATGARWR  324 (515)
T ss_pred             EEEEecCC-e-EEEEECCCCEEEeCEEEECCCCCcC
Confidence            99975432 2 3567788888999999999999875

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK06753 hypothetical protein; Provisional

Probab=98.31  E-value=2.8e-06  Score=84.71  Aligned_cols=120  Identities=20%  Similarity=0.148  Sum_probs=68.7

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC---------------CCCccccC---CCCC-CCCCCC
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP---------------ALTKGYLF---PLDK-KPARLP  112 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~---------------~l~~~~~~---~~~~-~~~~~~  112 (488)
                      .+|+|||||+||+++|..|++.|+   +|+|+|+.+.......               .+......   .... ...+..
T Consensus         1 ~~V~IvGgG~aGl~~A~~L~~~g~---~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~   77 (373)
T PRK06753          1 MKIAIIGAGIGGLTAAALLQEQGH---EVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDK   77 (373)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC---cEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCC
Confidence            379999999999999999999988   8999999875321100               00000000   0000 000000


Q ss_pred             Ccc----cc-cCCCCCC----CCHhHHHH--CCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCC
Q 011351          113 GFH----TC-VGSGGER----QTPEWYKE--KGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTA  174 (488)
Q Consensus       113 ~~~----~~-~~~~~~~----~~~~~~~~--~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~  174 (488)
                      +..    .. .+.....    .+.+.+.+  .+.+++.+++|++++.++.  ++++++|+++.+|.||-|.|...
T Consensus        78 g~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S  152 (373)
T PRK06753         78 GTLLNKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHS  152 (373)
T ss_pred             CCEEeecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcch
Confidence            000    00 0000000    01122221  2456888999999976554  56678888899999999999754

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=98.31  E-value=1.1e-06  Score=90.39  Aligned_cols=36  Identities=25%  Similarity=0.424  Sum_probs=32.7

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      +.++||+|||||+||+.||..+++.|.   +|+|||++.
T Consensus         2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~---kV~LiE~~~   37 (618)
T PRK05192          2 PEEYDVIVVGGGHAGCEAALAAARMGA---KTLLLTHNL   37 (618)
T ss_pred             CccceEEEECchHHHHHHHHHHHHcCC---cEEEEeccc
Confidence            346899999999999999999999987   899999874

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=98.31  E-value=2.5e-06  Score=89.49  Aligned_cols=37  Identities=16%  Similarity=0.319  Sum_probs=33.7

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      +.+.+|+|||||++|+++|..|++.|+   +|+|||+.+.
T Consensus        21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~---~v~viE~~~~   57 (547)
T PRK08132         21 PARHPVVVVGAGPVGLALAIDLAQQGV---PVVLLDDDDT   57 (547)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCC---cEEEEeCCCC
Confidence            456899999999999999999999988   8999999874

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.29  E-value=1.9e-06  Score=88.45  Aligned_cols=97  Identities=20%  Similarity=0.333  Sum_probs=72.7

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (488)
                      .++++|||||+.|+.+|..|++.|.   +|+++++.+...   |..        ..   .+           .....+.+
T Consensus       172 ~~~vvVvGgG~~g~E~A~~l~~~g~---~Vtli~~~~~~l---~~~--------~~---~~-----------~~~l~~~l  223 (462)
T PRK06416        172 PKSLVVIGGGYIGVEFASAYASLGA---EVTIVEALPRIL---PGE--------DK---EI-----------SKLAERAL  223 (462)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEEcCCCcC---CcC--------CH---HH-----------HHHHHHHH
Confidence            4789999999999999999999876   899999876421   000        00   00           12245667


Q ss_pred             HHCCCeEEeCCcEEEEeCCCcE--EEeCCC---cEEEeccEEeccCCCCC
Q 011351          131 KEKGIEMIYQDPVTSIDIEKQT--LITNSG---KLLKYGSLIVATGCTAS  175 (488)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~~--v~~~~g---~~i~yd~lVlAtG~~~~  175 (488)
                      ++.+++++.+++|.+++.+...  +.+.++   +++.+|.+|+|+|..|.
T Consensus       224 ~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~  273 (462)
T PRK06416        224 KKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPN  273 (462)
T ss_pred             HHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccC
Confidence            8889999999999999876543  444555   67999999999998875

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.29  E-value=1.1e-05  Score=83.73  Aligned_cols=100  Identities=26%  Similarity=0.389  Sum_probs=80.0

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecC--CcC-----------cccccCHHHHHHHHHHHHHcCcEEEcCCeEE
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE--NHL-----------LQRLFTPSLAQRYEQLYQQNGVKFVKGASIK  273 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~--~~~-----------l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~  273 (488)
                      ...++|||||+.|+.+|..+++.|.+++++...  ..+           .+....+++.+.+.+.+++.|++++.++++.
T Consensus       211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~  290 (517)
T PRK15317        211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQRAS  290 (517)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence            357999999999999999999999999998653  111           0112345778888899999999999999999


Q ss_pred             EEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351          274 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  308 (488)
Q Consensus       274 ~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~  308 (488)
                      .+...+ + ...+.+.+|+++.+|.||+|+|.+|.
T Consensus       291 ~I~~~~-~-~~~V~~~~g~~i~a~~vViAtG~~~r  323 (517)
T PRK15317        291 KLEPAA-G-LIEVELANGAVLKAKTVILATGARWR  323 (517)
T ss_pred             EEEecC-C-eEEEEECCCCEEEcCEEEECCCCCcC
Confidence            998643 2 23567788888999999999999875

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=98.28  E-value=3.5e-06  Score=83.51  Aligned_cols=114  Identities=16%  Similarity=0.194  Sum_probs=65.0

Q ss_pred             eEEEEcCchHHHHHHHHHHHc--CCCCCcEEEEcCCCCCCCCCCCCCccccCCCCC----------CCCCCCCccccc--
Q 011351           53 EFVIVGGGNAAGYAARTFVEH--GMADGRLCIVSKEAYAPYERPALTKGYLFPLDK----------KPARLPGFHTCV--  118 (488)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~--g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~----------~~~~~~~~~~~~--  118 (488)
                      ||+|||||+||+++|..|++.  |+   +|+++|+.+...-+++-   .++.....          ...+++...-..  
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~---~V~lle~~~~~~~~~tw---~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~   74 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDF---RIRVIEAGRTIGGNHTW---SFFDSDLSDAQHAWLADLVQTDWPGYEVRFPK   74 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCC---eEEEEeCCCCCCCcccc---eecccccchhhhhhhhhhheEeCCCCEEECcc
Confidence            699999999999999999987  55   89999998743211110   01100000          000000000000  


Q ss_pred             -----CCCC-CCCCH---hH-HHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCC
Q 011351          119 -----GSGG-ERQTP---EW-YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTA  174 (488)
Q Consensus       119 -----~~~~-~~~~~---~~-~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~  174 (488)
                           +..+ .....   +. .+..+..++.+++|..++.+  .+++.+|+++.+|.||-|.|..+
T Consensus        75 ~~~~l~~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~~--~v~l~dg~~~~A~~VI~A~G~~s  138 (370)
T TIGR01789        75 YRRKLKTAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDAD--GVDLAPGTRINARSVIDCRGFKP  138 (370)
T ss_pred             hhhhcCCCceEEEHHHHHHHHHHhhcccEEecCEEEEEeCC--EEEECCCCEEEeeEEEECCCCCC
Confidence                 0000 00001   11 12223346667889988654  36678899999999999999764

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=98.28  E-value=1.8e-06  Score=75.62  Aligned_cols=38  Identities=21%  Similarity=0.339  Sum_probs=34.1

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~   90 (488)
                      ...||+||||||+||+||++|++.|.   +|+|+|++.++.
T Consensus        29 ~esDViIVGaGPsGLtAAyyLAk~g~---kV~i~E~~ls~G   66 (262)
T COG1635          29 LESDVIIVGAGPSGLTAAYYLAKAGL---KVAIFERKLSFG   66 (262)
T ss_pred             hhccEEEECcCcchHHHHHHHHhCCc---eEEEEEeecccC
Confidence            35699999999999999999999987   899999987654

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.27  E-value=2.7e-06  Score=87.53  Aligned_cols=97  Identities=22%  Similarity=0.384  Sum_probs=70.9

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (488)
                      .++|+|||||++|+.+|..|++.|.   +|+|+++.+...   |..        .   ..+           .....+.+
T Consensus       180 ~~~vvIIGgG~~G~E~A~~l~~~g~---~Vtli~~~~~il---~~~--------~---~~~-----------~~~l~~~l  231 (472)
T PRK05976        180 PKSLVIVGGGVIGLEWASMLADFGV---EVTVVEAADRIL---PTE--------D---AEL-----------SKEVARLL  231 (472)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC---eEEEEEecCccC---CcC--------C---HHH-----------HHHHHHHH
Confidence            4799999999999999999999876   899999876420   000        0   000           01234567


Q ss_pred             HHCCCeEEeCCcEEEEeC--CCcE--EEeCCC--cEEEeccEEeccCCCCC
Q 011351          131 KEKGIEMIYQDPVTSIDI--EKQT--LITNSG--KLLKYGSLIVATGCTAS  175 (488)
Q Consensus       131 ~~~~i~~~~~~~v~~id~--~~~~--v~~~~g--~~i~yd~lVlAtG~~~~  175 (488)
                      ++.|++++.++.|+.++.  +++.  +.+.+|  ++++||.+++|+|..|.
T Consensus       232 ~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~  282 (472)
T PRK05976        232 KKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPN  282 (472)
T ss_pred             HhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccC
Confidence            888999999999999974  3332  233456  36999999999998875

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.27  E-value=2.9e-06  Score=86.36  Aligned_cols=95  Identities=14%  Similarity=0.254  Sum_probs=73.5

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (488)
                      ..+++|||||+.|+.+|..|++.|.   +|+|+++.+...   +...        .   .+           .....+.+
T Consensus       148 ~~~vvViGgG~ig~E~A~~l~~~g~---~Vtli~~~~~l~---~~~d--------~---~~-----------~~~l~~~l  199 (438)
T PRK13512        148 VDKALVVGAGYISLEVLENLYERGL---HPTLIHRSDKIN---KLMD--------A---DM-----------NQPILDEL  199 (438)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC---cEEEEecccccc---hhcC--------H---HH-----------HHHHHHHH
Confidence            4689999999999999999999876   899999875421   0000        0   00           12245667


Q ss_pred             HHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCC
Q 011351          131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS  175 (488)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~  175 (488)
                      ++.|++++.++.|.+++.  ..+++++|+.+.+|.+++|+|..|.
T Consensus       200 ~~~gI~i~~~~~v~~i~~--~~v~~~~g~~~~~D~vl~a~G~~pn  242 (438)
T PRK13512        200 DKREIPYRLNEEIDAING--NEVTFKSGKVEHYDMIIEGVGTHPN  242 (438)
T ss_pred             HhcCCEEEECCeEEEEeC--CEEEECCCCEEEeCEEEECcCCCcC
Confidence            888999999999999874  4677788888999999999998775

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.27  E-value=6.7e-06  Score=84.05  Aligned_cols=101  Identities=22%  Similarity=0.408  Sum_probs=71.9

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCcCc------cccc----C--HHHHHHHHHHHHHcCcEEEcCCeEE
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLL------QRLF----T--PSLAQRYEQLYQQNGVKFVKGASIK  273 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g--~~v~lv~~~~~~l------~~~~----~--~~~~~~~~~~l~~~GV~v~~~~~v~  273 (488)
                      ++++|||+|+.|+.+|..|++++  .+|+++++.+.+.      +...    .  .++.....+.+++.||+++.++.++
T Consensus         1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~   80 (444)
T PRK09564          1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVV   80 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEE
Confidence            47999999999999999999875  4899999887531      1111    1  1122333466788899999999999


Q ss_pred             EEEeCCCCcEEEEEe-CCCcEEE--cCEEEEeecCccCCh
Q 011351          274 NLEAGSDGRVAAVKL-EDGSTID--ADTIVIGIGAKPTVS  310 (488)
Q Consensus       274 ~i~~~~~~~v~~v~l-~~g~~i~--~D~vi~a~G~~p~~~  310 (488)
                      +++.+ +..+ .+.. .+|+++.  +|.+|+|||.+|...
T Consensus        81 ~id~~-~~~v-~~~~~~~~~~~~~~yd~lviAtG~~~~~~  118 (444)
T PRK09564         81 KVDAK-NKTI-TVKNLKTGSIFNDTYDKLMIATGARPIIP  118 (444)
T ss_pred             EEECC-CCEE-EEEECCCCCEEEecCCEEEECCCCCCCCC
Confidence            99854 3322 2322 2356666  999999999998754

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=98.26  E-value=1.6e-06  Score=86.78  Aligned_cols=119  Identities=18%  Similarity=0.239  Sum_probs=69.7

Q ss_pred             eEEEEcCchHHHHHHHHHHHcC-CCCCcEEEEcCCCCCCCC-----C-CCCCcc---c-----cCCCC-CCCCCCCCc--
Q 011351           53 EFVIVGGGNAAGYAARTFVEHG-MADGRLCIVSKEAYAPYE-----R-PALTKG---Y-----LFPLD-KKPARLPGF--  114 (488)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g-~~~~~V~lie~~~~~~~~-----~-~~l~~~---~-----~~~~~-~~~~~~~~~--  114 (488)
                      ||+|||||+||+++|..|+++| +   +|+|+|+.+.....     + ..+...   .     +...- .........  
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~---~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~   77 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKI---KIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHV   77 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCc---eEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEE
Confidence            6999999999999999999999 8   89999998653221     0 000000   0     00000 000000000  


Q ss_pred             --------ccccCCC-------CCC---CCH----hHHHH-CCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEec
Q 011351          115 --------HTCVGSG-------GER---QTP----EWYKE-KGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVA  169 (488)
Q Consensus       115 --------~~~~~~~-------~~~---~~~----~~~~~-~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlA  169 (488)
                              ......+       +..   .+.    +.+.. .+++++.+++|+++..+..  ++++++|+++.+|.||.|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~A  157 (382)
T TIGR01984        78 SDQGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAA  157 (382)
T ss_pred             EcCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEe
Confidence                    0000000       000   011    22233 3899998999999875543  566778888999999999


Q ss_pred             cCCCC
Q 011351          170 TGCTA  174 (488)
Q Consensus       170 tG~~~  174 (488)
                      .|...
T Consensus       158 dG~~S  162 (382)
T TIGR01984       158 DGANS  162 (382)
T ss_pred             cCCCh
Confidence            99764

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=98.26  E-value=3.3e-06  Score=84.56  Aligned_cols=120  Identities=18%  Similarity=0.278  Sum_probs=70.3

Q ss_pred             eEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC------C-CCCCc---cc-----cCCC-CC-CCCCCCCcc
Q 011351           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE------R-PALTK---GY-----LFPL-DK-KPARLPGFH  115 (488)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~------~-~~l~~---~~-----~~~~-~~-~~~~~~~~~  115 (488)
                      ||+|||||+||+++|..|++.|+   +|+|+|+.+.....      + ..++.   ..     +... .. ......+..
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~---~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~   77 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGL---KIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIH   77 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCC---EEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEE
Confidence            69999999999999999999987   89999999753111      0 00000   00     0000 00 000000000


Q ss_pred             ----------ccc-----CCC---------CCCCCHhHHHHCC-CeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEe
Q 011351          116 ----------TCV-----GSG---------GERQTPEWYKEKG-IEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIV  168 (488)
Q Consensus       116 ----------~~~-----~~~---------~~~~~~~~~~~~~-i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVl  168 (488)
                                ...     ...         ....+.+.+.+.+ ++++.+++|++++....  .+++++|+.+.+|.+|.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~  157 (385)
T TIGR01988        78 VSDGGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVG  157 (385)
T ss_pred             EEeCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEE
Confidence                      000     000         0000112233445 89999999999976554  45667888899999999


Q ss_pred             ccCCCCC
Q 011351          169 ATGCTAS  175 (488)
Q Consensus       169 AtG~~~~  175 (488)
                      |.|....
T Consensus       158 adG~~S~  164 (385)
T TIGR01988       158 ADGANSK  164 (385)
T ss_pred             eCCCCCH
Confidence            9997643

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=98.26  E-value=1.4e-05  Score=81.82  Aligned_cols=54  Identities=26%  Similarity=0.420  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCc
Q 011351          249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  306 (488)
Q Consensus       249 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~  306 (488)
                      ..+...+.+.+++.|++++.++.|++++.+  +. ..|.+.+| ++.+|.||+|+|..
T Consensus       183 ~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~--~~-~~v~t~~g-~v~A~~VV~Atga~  236 (460)
T TIGR03329       183 GLLVRGLRRVALELGVEIHENTPMTGLEEG--QP-AVVRTPDG-QVTADKVVLALNAW  236 (460)
T ss_pred             HHHHHHHHHHHHHcCCEEECCCeEEEEeeC--Cc-eEEEeCCc-EEECCEEEEccccc
Confidence            456677778888999999999999999742  22 35677777 59999999999964

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=98.26  E-value=3.6e-06  Score=84.05  Aligned_cols=35  Identities=14%  Similarity=0.277  Sum_probs=32.1

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      +++||+|||||++|+++|++|++.|.   +|+|||++.
T Consensus         2 ~~~dv~IIGgGi~G~s~A~~L~~~g~---~V~lie~~~   36 (376)
T PRK11259          2 MRYDVIVIGLGSMGSAAGYYLARRGL---RVLGLDRFM   36 (376)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHCCC---eEEEEeccc
Confidence            45899999999999999999999987   899999875

>PRK11445 putative oxidoreductase; Provisional

Probab=98.26  E-value=4.5e-06  Score=82.42  Aligned_cols=34  Identities=24%  Similarity=0.367  Sum_probs=30.9

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      ++||+||||||||+++|..|++. +   +|+|+|+.+.
T Consensus         1 ~~dV~IvGaGpaGl~~A~~La~~-~---~V~liE~~~~   34 (351)
T PRK11445          1 HYDVAIIGLGPAGSALARLLAGK-M---KVIAIDKKHQ   34 (351)
T ss_pred             CceEEEECCCHHHHHHHHHHhcc-C---CEEEEECCCc
Confidence            47999999999999999999997 6   8999998864

>PRK06847 hypothetical protein; Provisional

Probab=98.25  E-value=1.6e-05  Score=79.27  Aligned_cols=101  Identities=25%  Similarity=0.333  Sum_probs=78.3

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc------------------------------------------
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------------------------------------  244 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~------------------------------------------  244 (488)
                      .++|+|||+|+.|+-+|..|.+.|.+|+++++.+.+..                                          
T Consensus         4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g~   83 (375)
T PRK06847          4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDGT   83 (375)
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCCC
Confidence            56899999999999999999999999999987632100                                          


Q ss_pred             ---cc----------------cCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecC
Q 011351          245 ---RL----------------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  305 (488)
Q Consensus       245 ---~~----------------~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~  305 (488)
                         ..                ..+.+.+.+.+.+++.|+++++++++++++..+ +. ..+.+.+|+++.+|.||.|.|.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~-~~-~~v~~~~g~~~~ad~vI~AdG~  161 (375)
T PRK06847         84 LLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDD-DG-VTVTFSDGTTGRYDLVVGADGL  161 (375)
T ss_pred             EEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcC-CE-EEEEEcCCCEEEcCEEEECcCC
Confidence               00                002345566677777899999999999998643 33 3577889999999999999998


Q ss_pred             ccCC
Q 011351          306 KPTV  309 (488)
Q Consensus       306 ~p~~  309 (488)
                      .+..
T Consensus       162 ~s~~  165 (375)
T PRK06847        162 YSKV  165 (375)
T ss_pred             Ccch
Confidence            7754

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=98.25  E-value=6.2e-05  Score=76.68  Aligned_cols=103  Identities=16%  Similarity=0.194  Sum_probs=75.2

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccc---------------------------------------
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL---------------------------------------  246 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~---------------------------------------  246 (488)
                      ..++|+|||+|++|+-+|..|.+.|.+++++++++.+-..+                                       
T Consensus         9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f   88 (461)
T PLN02172          9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGY   88 (461)
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccC
Confidence            35889999999999999999999999999998764221000                                       


Q ss_pred             --------------------cCHHHHHHHHHHHHHcCcE--EEcCCeEEEEEeCCCCcEEEEEeCC--Cc--EEEcCEEE
Q 011351          247 --------------------FTPSLAQRYEQLYQQNGVK--FVKGASIKNLEAGSDGRVAAVKLED--GS--TIDADTIV  300 (488)
Q Consensus       247 --------------------~~~~~~~~~~~~l~~~GV~--v~~~~~v~~i~~~~~~~v~~v~l~~--g~--~i~~D~vi  300 (488)
                                          -..++.+++++..+..|+.  +.++++|++++..+ ++. .|.+.+  +.  +..+|.||
T Consensus        89 ~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~-~~w-~V~~~~~~~~~~~~~~d~VI  166 (461)
T PLN02172         89 RDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVD-GKW-RVQSKNSGGFSKDEIFDAVV  166 (461)
T ss_pred             CCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecC-CeE-EEEEEcCCCceEEEEcCEEE
Confidence                                0034667788888888988  89999999998643 332 344433  22  46799999


Q ss_pred             Eeec--CccCCh
Q 011351          301 IGIG--AKPTVS  310 (488)
Q Consensus       301 ~a~G--~~p~~~  310 (488)
                      +|+|  ..|+..
T Consensus       167 vAtG~~~~P~~P  178 (461)
T PLN02172        167 VCNGHYTEPNVA  178 (461)
T ss_pred             EeccCCCCCcCC
Confidence            9999  456543

>PRK14694 putative mercuric reductase; Provisional

Probab=98.25  E-value=4.2e-06  Score=86.00  Aligned_cols=96  Identities=23%  Similarity=0.363  Sum_probs=70.7

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (488)
                      .++++|||+|+.|+..|..|++.|.   +|+++++...++.    .        ..   .+           .....+.+
T Consensus       178 ~~~vvViG~G~~G~E~A~~l~~~g~---~Vtlv~~~~~l~~----~--------~~---~~-----------~~~l~~~l  228 (468)
T PRK14694        178 PERLLVIGASVVALELAQAFARLGS---RVTVLARSRVLSQ----E--------DP---AV-----------GEAIEAAF  228 (468)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEECCCCCCC----C--------CH---HH-----------HHHHHHHH
Confidence            4799999999999999999999886   8999986422110    0        00   00           12345667


Q ss_pred             HHCCCeEEeCCcEEEEeCCCcE--EEeCCCcEEEeccEEeccCCCCCc
Q 011351          131 KEKGIEMIYQDPVTSIDIEKQT--LITNSGKLLKYGSLIVATGCTASR  176 (488)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~~--v~~~~g~~i~yd~lVlAtG~~~~~  176 (488)
                      ++.|++++.++.+..++.++..  +.+.+ .++.+|.|++|+|..|..
T Consensus       229 ~~~GI~v~~~~~v~~i~~~~~~~~v~~~~-~~i~~D~vi~a~G~~pn~  275 (468)
T PRK14694        229 RREGIEVLKQTQASEVDYNGREFILETNA-GTLRAEQLLVATGRTPNT  275 (468)
T ss_pred             HhCCCEEEeCCEEEEEEEcCCEEEEEECC-CEEEeCEEEEccCCCCCc
Confidence            8889999999999999876553  33334 469999999999988763

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.25  E-value=3.2e-06  Score=86.30  Aligned_cols=97  Identities=19%  Similarity=0.274  Sum_probs=73.1

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (488)
                      .++++|||||+.|+.+|..|++.|.   +|+++++.+....   .+        .   ..+           .....+.+
T Consensus       166 ~~~vvVIGgG~~g~E~A~~l~~~G~---~Vtli~~~~~~l~---~~--------d---~~~-----------~~~l~~~l  217 (446)
T TIGR01424       166 PKSILILGGGYIAVEFAGIWRGLGV---QVTLIYRGELILR---GF--------D---DDM-----------RALLARNM  217 (446)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCC---eEEEEEeCCCCCc---cc--------C---HHH-----------HHHHHHHH
Confidence            5689999999999999999999876   8999998754210   00        0   000           11234567


Q ss_pred             HHCCCeEEeCCcEEEEeCCC--cEEEeCCCcEEEeccEEeccCCCCC
Q 011351          131 KEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTAS  175 (488)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~--~~v~~~~g~~i~yd~lVlAtG~~~~  175 (488)
                      ++.+++++.++.|.+++...  ..+.+.+++++.+|.+|+|+|..|.
T Consensus       218 ~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn  264 (446)
T TIGR01424       218 EGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPN  264 (446)
T ss_pred             HHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcC
Confidence            78899999999999997533  3566677888999999999998765

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=98.24  E-value=2.2e-05  Score=80.45  Aligned_cols=38  Identities=21%  Similarity=0.341  Sum_probs=32.9

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~   90 (488)
                      ++|+|||||+|||+||+.|++.|. ..+|+|+|+++...
T Consensus         1 ~~v~IVGaGiaGL~aA~~L~~~G~-~~~V~vlEa~~~~G   38 (451)
T PRK11883          1 KKVAIIGGGITGLSAAYRLHKKGP-DADITLLEASDRLG   38 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCC-CCCEEEEEcCCCCc
Confidence            479999999999999999999873 34899999998754

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=98.24  E-value=5.7e-06  Score=84.06  Aligned_cols=39  Identities=21%  Similarity=0.463  Sum_probs=34.5

Q ss_pred             cCCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           47 FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        47 ~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      +..+++||+||||||||++||..|++.|+   +|+|+|+...
T Consensus        35 ~~~~~~DViIVGaGPAG~~aA~~LA~~G~---~VlllEr~~~   73 (450)
T PLN00093         35 LSGRKLRVAVIGGGPAGACAAETLAKGGI---ETFLIERKLD   73 (450)
T ss_pred             cCCCCCeEEEECCCHHHHHHHHHHHhCCC---cEEEEecCCC
Confidence            34567899999999999999999999998   8999999753

>TIGR00275 flavoprotein, HI0933 family

Probab=98.24  E-value=1.8e-06  Score=86.64  Aligned_cols=46  Identities=30%  Similarity=0.379  Sum_probs=35.0

Q ss_pred             hHHHHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCC
Q 011351          128 EWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTA  174 (488)
Q Consensus       128 ~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~  174 (488)
                      +.+++.+++++.++.|+++..+..  .+++ ++.++.+|+||+|||...
T Consensus       113 ~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAtG~~s  160 (400)
T TIGR00275       113 NELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILATGGLS  160 (400)
T ss_pred             HHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECCCCcc
Confidence            345667999999999999876543  3444 456799999999999754

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK06116 glutathione reductase; Validated

Probab=98.24  E-value=3.6e-06  Score=86.13  Aligned_cols=98  Identities=19%  Similarity=0.212  Sum_probs=74.3

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      ..++|+|||||+.|+.+|..|++.|.   +|+++++.+...   +..        +.   .+           .....+.
T Consensus       166 ~~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l---~~~--------~~---~~-----------~~~l~~~  217 (450)
T PRK06116        166 LPKRVAVVGAGYIAVEFAGVLNGLGS---ETHLFVRGDAPL---RGF--------DP---DI-----------RETLVEE  217 (450)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCC---eEEEEecCCCCc---ccc--------CH---HH-----------HHHHHHH
Confidence            35799999999999999999999876   899999775421   000        00   00           1234566


Q ss_pred             HHHCCCeEEeCCcEEEEeCCC---cEEEeCCCcEEEeccEEeccCCCCC
Q 011351          130 YKEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGSLIVATGCTAS  175 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~---~~v~~~~g~~i~yd~lVlAtG~~~~  175 (488)
                      +++.+++++.++.|.+++.+.   ..+.+.+|+++.+|.+|+|+|..|.
T Consensus       218 L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~  266 (450)
T PRK06116        218 MEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPN  266 (450)
T ss_pred             HHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcC
Confidence            788999999999999997642   3566778888999999999998775

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=98.23  E-value=4.2e-06  Score=83.17  Aligned_cols=33  Identities=18%  Similarity=0.376  Sum_probs=30.5

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      +||+|||||++|+++|++|++.|.   +|+|+|++.
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~~G~---~V~vle~~~   33 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAARRGL---SVTVIERSS   33 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC---eEEEEeCCC
Confidence            489999999999999999999986   899999875

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.23  E-value=4.2e-06  Score=85.96  Aligned_cols=98  Identities=19%  Similarity=0.309  Sum_probs=73.9

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      ..++++|||||+.|+.+|..|++.|.   +|+|+++.+...   +.     +   +.   .+           .....+.
T Consensus       174 ~~~~v~IiGgG~~g~E~A~~l~~~g~---~Vtli~~~~~~l---~~-----~---d~---~~-----------~~~l~~~  225 (461)
T PRK05249        174 LPRSLIIYGAGVIGCEYASIFAALGV---KVTLINTRDRLL---SF-----L---DD---EI-----------SDALSYH  225 (461)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCC---eEEEEecCCCcC---Cc-----C---CH---HH-----------HHHHHHH
Confidence            35799999999999999999999886   899999875421   00     0   00   00           1224556


Q ss_pred             HHHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCCC
Q 011351          130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  175 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~~  175 (488)
                      +++.+++++.++.|++++..+.  .+++.+|+++.+|.+++|+|..|.
T Consensus       226 l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  273 (461)
T PRK05249        226 LRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGN  273 (461)
T ss_pred             HHHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCcc
Confidence            7788999999999999875433  455677888999999999998875

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.23  E-value=2.6e-06  Score=76.87  Aligned_cols=105  Identities=21%  Similarity=0.318  Sum_probs=73.1

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc--cccCH-----------HHH--H--HHHHHHHHcCcEEEcCCe
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--RLFTP-----------SLA--Q--RYEQLYQQNGVKFVKGAS  271 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~--~~~~~-----------~~~--~--~~~~~l~~~GV~v~~~~~  271 (488)
                      +|+|||+|+.|+.+|..|...+.+++++++.+....  ..+..           ...  .  .+.+.+...+++++.+++
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   80 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNAK   80 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHHT
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeeccc
Confidence            589999999999999999999999999977653111  00000           011  1  334445778999999999


Q ss_pred             EEEEEeCCCC------cEEEEEeCCCcEEEcCEEEEeecCccCChhhh
Q 011351          272 IKNLEAGSDG------RVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE  313 (488)
Q Consensus       272 v~~i~~~~~~------~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~  313 (488)
                      +.+++.....      .+......++.++.+|.+|+|+|..|+...++
T Consensus        81 v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~  128 (201)
T PF07992_consen   81 VVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIP  128 (201)
T ss_dssp             EEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESST
T ss_pred             cccccccccccccCcccceeeccCCceEecCCeeeecCccccceeecC
Confidence            9999865331      11223445667899999999999987754333

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.23  E-value=4.6e-06  Score=83.85  Aligned_cols=99  Identities=19%  Similarity=0.339  Sum_probs=75.0

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHh
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (488)
                      ..+++++|||||+.|+..|..+++.|.   +|||||+.+..           +...+...              ......
T Consensus       171 ~lP~~lvIiGgG~IGlE~a~~~~~LG~---~VTiie~~~~i-----------Lp~~D~ei--------------~~~~~~  222 (454)
T COG1249         171 ELPKSLVIVGGGYIGLEFASVFAALGS---KVTVVERGDRI-----------LPGEDPEI--------------SKELTK  222 (454)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHcCC---cEEEEecCCCC-----------CCcCCHHH--------------HHHHHH
Confidence            456789999999999999999999987   89999988763           11111111              122455


Q ss_pred             HHHHCCCeEEeCCcEEEEeCCCc--EEEeCCCc--EEEeccEEeccCCCCC
Q 011351          129 WYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGK--LLKYGSLIVATGCTAS  175 (488)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~--~i~yd~lVlAtG~~~~  175 (488)
                      .+++.+++++.++.++.+...+.  .+.+++++  .+.+|++++|+|-.|+
T Consensus       223 ~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn  273 (454)
T COG1249         223 QLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPN  273 (454)
T ss_pred             HHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccC
Confidence            66777899999999988876553  56677776  6899999999997765

>PRK07846 mycothione reductase; Reviewed

Probab=98.22  E-value=4.6e-06  Score=85.10  Aligned_cols=96  Identities=26%  Similarity=0.367  Sum_probs=70.5

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (488)
                      .++++|||||+.|+.+|..|++.|.   +|+|+++.+...   +..        +.   .+           .....+ +
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~G~---~Vtli~~~~~ll---~~~--------d~---~~-----------~~~l~~-l  216 (451)
T PRK07846        166 PESLVIVGGGFIAAEFAHVFSALGV---RVTVVNRSGRLL---RHL--------DD---DI-----------SERFTE-L  216 (451)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEEcCCccc---ccc--------CH---HH-----------HHHHHH-H
Confidence            5799999999999999999999876   899999876421   000        00   00           001122 2


Q ss_pred             HHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCCC
Q 011351          131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  175 (488)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~~  175 (488)
                      .+.++++++++++++++.++.  .+.+.+|+++++|.+++|+|..|.
T Consensus       217 ~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn  263 (451)
T PRK07846        217 ASKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPN  263 (451)
T ss_pred             HhcCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccC
Confidence            346799999999999986543  456677888999999999998875

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=98.22  E-value=6.7e-06  Score=81.70  Aligned_cols=97  Identities=19%  Similarity=0.305  Sum_probs=72.3

Q ss_pred             eEEEECCCHHHHHHHHHHHhC---CCcEEEEecCCcCccc-cc---------CHHHHHHHHHHHHHcCcEEEcCCeEEEE
Q 011351          209 KVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPENHLLQR-LF---------TPSLAQRYEQLYQQNGVKFVKGASIKNL  275 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~---g~~v~lv~~~~~~l~~-~~---------~~~~~~~~~~~l~~~GV~v~~~~~v~~i  275 (488)
                      +|+|||||+.|+.+|..+.+.   +.+|+++++.+..... .+         ..++...+.+.+++.||+++.+ .++.+
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~i   79 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIA-EATGI   79 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEE-EEEEE
Confidence            489999999999999998643   5789999988653211 11         1123334556677889999886 78899


Q ss_pred             EeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCCh
Q 011351          276 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  310 (488)
Q Consensus       276 ~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~  310 (488)
                      +..+ .   .|.+++|+++.+|.+|+|||.+|...
T Consensus        80 d~~~-~---~V~~~~g~~~~yD~LviAtG~~~~~~  110 (364)
T TIGR03169        80 DPDR-R---KVLLANRPPLSYDVLSLDVGSTTPLS  110 (364)
T ss_pred             eccc-C---EEEECCCCcccccEEEEccCCCCCCC
Confidence            7542 2   57788998899999999999998743

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=98.22  E-value=4.8e-06  Score=83.44  Aligned_cols=32  Identities=22%  Similarity=0.526  Sum_probs=30.4

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~   86 (488)
                      +||+||||||||+++|+.|++.|+   +|+|+|+.
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~---~V~l~E~~   32 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGI---ETILLERA   32 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCC---cEEEEECC
Confidence            589999999999999999999988   89999997

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.22  E-value=1.2e-05  Score=78.62  Aligned_cols=95  Identities=24%  Similarity=0.429  Sum_probs=69.8

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecC-CcCcc-------------------------------------------
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE-NHLLQ-------------------------------------------  244 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~-~~~l~-------------------------------------------  244 (488)
                      .|+|||||..|+|.|..+++.|.+|.++... +.+..                                           
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s   80 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS   80 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence            4899999999999999999999999998433 11110                                           


Q ss_pred             ---------cccC-HHHHHHHHHHHHH-cCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecC
Q 011351          245 ---------RLFT-PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  305 (488)
Q Consensus       245 ---------~~~~-~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~  305 (488)
                               .+.| ..+...+++.+++ .+++++. .+|+++.. +++++.+|.+.+|+++.+|.||+|||.
T Consensus        81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~-~~V~~l~~-e~~~v~GV~~~~g~~~~a~~vVlaTGt  150 (392)
T PF01134_consen   81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQ-GEVTDLIV-ENGKVKGVVTKDGEEIEADAVVLATGT  150 (392)
T ss_dssp             S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEE-S-EEEEEE-CTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred             CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEE-cccceEEe-cCCeEEEEEeCCCCEEecCEEEEeccc
Confidence                     0112 2345666777777 6899874 57999975 468899999999999999999999998

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.22  E-value=4.3e-06  Score=88.14  Aligned_cols=36  Identities=25%  Similarity=0.400  Sum_probs=32.3

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      ....||||||||.||++||.++++.|.   +|+||||..
T Consensus        10 ~~~~DVvVIG~G~AGl~AAl~Aa~~G~---~V~lveK~~   45 (598)
T PRK09078         10 DHKYDVVVVGAGGAGLRATLGMAEAGL---KTACITKVF   45 (598)
T ss_pred             ccccCEEEECccHHHHHHHHHHHHcCC---cEEEEEccC
Confidence            346799999999999999999999876   899999975

>PLN02661 Putative thiazole synthesis

Probab=98.21  E-value=4.2e-06  Score=80.45  Aligned_cols=37  Identities=22%  Similarity=0.413  Sum_probs=32.2

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHc-CCCCCcEEEEcCCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKEAYA   89 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~-g~~~~~V~lie~~~~~   89 (488)
                      ...||+|||||++|++||+.|++. |.   +|+|||+....
T Consensus        91 ~~~DVlIVGaG~AGl~AA~~La~~~g~---kV~viEk~~~~  128 (357)
T PLN02661         91 ADTDVVIVGAGSAGLSCAYELSKNPNV---KVAIIEQSVSP  128 (357)
T ss_pred             ccCCEEEECCHHHHHHHHHHHHHcCCC---eEEEEecCccc
Confidence            457999999999999999999975 44   89999998654

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=98.21  E-value=2.4e-05  Score=80.40  Aligned_cols=37  Identities=24%  Similarity=0.339  Sum_probs=33.1

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHc----CCCCCcEEEEcCCCCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEH----GMADGRLCIVSKEAYAP   90 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~----g~~~~~V~lie~~~~~~   90 (488)
                      +++|+|||||+|||+||+.|.++    |+   +|+|+|+++...
T Consensus         2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~---~v~vlE~~~r~G   42 (462)
T TIGR00562         2 KKHVVIIGGGISGLCAAYYLEKEIPELPV---ELTLVEASDRVG   42 (462)
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCCCCC---cEEEEEcCCcCc
Confidence            46899999999999999999998    66   899999998653

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=98.21  E-value=2.7e-05  Score=77.97  Aligned_cols=57  Identities=28%  Similarity=0.437  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHcC-cEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351          249 PSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  308 (488)
Q Consensus       249 ~~~~~~~~~~l~~~G-V~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~  308 (488)
                      ..+...+.+.+++.| ..+..++.+..++.. . ....|.+.+|+ +.+|.||+|+|...+
T Consensus       156 ~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~g~-i~a~~vv~a~G~~~~  213 (387)
T COG0665         156 RLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDGGT-IEADKVVLAAGAWAG  213 (387)
T ss_pred             HHHHHHHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCCcc-EEeCEEEEcCchHHH
Confidence            466777888888999 556668888888754 3 55678888887 999999999997643

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=98.21  E-value=2.2e-05  Score=80.57  Aligned_cols=68  Identities=21%  Similarity=0.453  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHcC-cEEEcCCeEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEeecCccCChhhhhcCCc
Q 011351          249 PSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKPTVSPFERVGLN  318 (488)
Q Consensus       249 ~~~~~~~~~~l~~~G-V~v~~~~~v~~i~~~~~~~v~~v~l---~~g~--~i~~D~vi~a~G~~p~~~~~~~~gl~  318 (488)
                      ..+.+.+.+.+++.| +++++++.|+.++..+++.+ .+.+   .+|+  ++.+|.||+|+|.... .+++.+|+.
T Consensus       183 ~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~-~v~~~~~~~G~~~~i~A~~VVvaAGg~s~-~L~~~~Gi~  256 (494)
T PRK05257        183 GALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSW-TVTVKDLKTGEKRTVRAKFVFIGAGGGAL-PLLQKSGIP  256 (494)
T ss_pred             HHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCE-EEEEEEcCCCceEEEEcCEEEECCCcchH-HHHHHcCCC
Confidence            356777777788876 99999999999987555533 2332   3453  6999999999998764 566666654

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=98.21  E-value=1e-05  Score=81.93  Aligned_cols=41  Identities=17%  Similarity=0.199  Sum_probs=33.0

Q ss_pred             CCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCC
Q 011351          134 GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTA  174 (488)
Q Consensus       134 ~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~  174 (488)
                      +..++++++|++++....  ++++++|.++.+|.||.|.|...
T Consensus       117 ~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S  159 (414)
T TIGR03219       117 EGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKS  159 (414)
T ss_pred             CceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccH
Confidence            456778899999976543  56778888899999999999764

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK06996 hypothetical protein; Provisional

Probab=98.21  E-value=3.8e-06  Score=84.52  Aligned_cols=41  Identities=15%  Similarity=0.196  Sum_probs=34.3

Q ss_pred             cCCCCCeEEEEcCchHHHHHHHHHHHcCC-CCCcEEEEcCCC
Q 011351           47 FANENREFVIVGGGNAAGYAARTFVEHGM-ADGRLCIVSKEA   87 (488)
Q Consensus        47 ~~~~~~~vvIIGgG~AGl~aA~~L~~~g~-~~~~V~lie~~~   87 (488)
                      |.++.++|+||||||+|+++|..|++.|. ...+|+|+|+.+
T Consensus         7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~   48 (398)
T PRK06996          7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE   48 (398)
T ss_pred             ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence            45677899999999999999999999872 123799999975

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=98.20  E-value=1e-05  Score=81.95  Aligned_cols=99  Identities=23%  Similarity=0.376  Sum_probs=72.1

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccC----------HHHHHHHHHHHHHcCcEEEcCCeEEEE
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFT----------PSLAQRYEQLYQQNGVKFVKGASIKNL  275 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~----------~~~~~~~~~~l~~~GV~v~~~~~v~~i  275 (488)
                      ..++++|||||+.|+.+|..|...+.+|++|++.+.+.....-          ..+...+...++..+++++.+ +|++|
T Consensus         9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~-~V~~I   87 (424)
T PTZ00318          9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLRA-VVYDV   87 (424)
T ss_pred             CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEEE-EEEEE
Confidence            4578999999999999999987667899999988765332111          123333455666778888765 78999


Q ss_pred             EeCCCCcEEEEEe----------CCCcEEEcCEEEEeecCccCC
Q 011351          276 EAGSDGRVAAVKL----------EDGSTIDADTIVIGIGAKPTV  309 (488)
Q Consensus       276 ~~~~~~~v~~v~l----------~~g~~i~~D~vi~a~G~~p~~  309 (488)
                      +.+ +..   |.+          ++|+++++|.+|+|+|.+|..
T Consensus        88 d~~-~~~---v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~  127 (424)
T PTZ00318         88 DFE-EKR---VKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNT  127 (424)
T ss_pred             EcC-CCE---EEEecccccccccCCceEecCCEEEECCCcccCC
Confidence            854 332   333          466789999999999999764

>PLN02487 zeta-carotene desaturase

Probab=98.19  E-value=8e-06  Score=84.79  Aligned_cols=60  Identities=17%  Similarity=0.213  Sum_probs=47.6

Q ss_pred             cCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCC--CC--cEEEEEe---CCCcEEEcCEEEEeecCc
Q 011351          247 FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS--DG--RVAAVKL---EDGSTIDADTIVIGIGAK  306 (488)
Q Consensus       247 ~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~--~~--~v~~v~l---~~g~~i~~D~vi~a~G~~  306 (488)
                      +...+.+.+.+.++++|.+|++++.|.+|+.+.  ++  ++.++.+   .+++++.+|.||++++..
T Consensus       293 ~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~  359 (569)
T PLN02487        293 PDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVP  359 (569)
T ss_pred             chHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHH
Confidence            344577888899999999999999999998652  23  3677887   345579999999999864

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.19  E-value=5.5e-06  Score=85.08  Aligned_cols=97  Identities=23%  Similarity=0.321  Sum_probs=71.5

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (488)
                      .++++|||||+.|+.+|..|++.|.   +|+|++..+...   |..        +.   .+           .....+.+
T Consensus       172 ~~~vvVIGgG~ig~E~A~~l~~~G~---~Vtlv~~~~~~l---~~~--------d~---~~-----------~~~l~~~l  223 (466)
T PRK07818        172 PKSIVIAGAGAIGMEFAYVLKNYGV---DVTIVEFLDRAL---PNE--------DA---EV-----------SKEIAKQY  223 (466)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCC---eEEEEecCCCcC---Ccc--------CH---HH-----------HHHHHHHH
Confidence            4799999999999999999999886   899999765320   000        00   00           12345677


Q ss_pred             HHCCCeEEeCCcEEEEeCCCcE--EEeC--CC--cEEEeccEEeccCCCCC
Q 011351          131 KEKGIEMIYQDPVTSIDIEKQT--LITN--SG--KLLKYGSLIVATGCTAS  175 (488)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~~--v~~~--~g--~~i~yd~lVlAtG~~~~  175 (488)
                      ++.+++++.+++|.+++.++..  +.+.  +|  +++++|.|++|+|..|.
T Consensus       224 ~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn  274 (466)
T PRK07818        224 KKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPR  274 (466)
T ss_pred             HHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccC
Confidence            8899999999999999865543  3433  55  36999999999998775

>PRK06370 mercuric reductase; Validated

Probab=98.19  E-value=5.8e-06  Score=84.89  Aligned_cols=98  Identities=15%  Similarity=0.245  Sum_probs=71.8

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (488)
                      .++|+|||||+.|+.+|..|++.|.   +|+|+++.+...-   ..        ..   .+           .....+.+
T Consensus       171 ~~~vvVIGgG~~g~E~A~~l~~~G~---~Vtli~~~~~~l~---~~--------~~---~~-----------~~~l~~~l  222 (463)
T PRK06370        171 PEHLVIIGGGYIGLEFAQMFRRFGS---EVTVIERGPRLLP---RE--------DE---DV-----------AAAVREIL  222 (463)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC---eEEEEEcCCCCCc---cc--------CH---HH-----------HHHHHHHH
Confidence            4799999999999999999999886   8999998765210   00        00   00           01234567


Q ss_pred             HHCCCeEEeCCcEEEEeCCCc--EEEe---CCCcEEEeccEEeccCCCCCc
Q 011351          131 KEKGIEMIYQDPVTSIDIEKQ--TLIT---NSGKLLKYGSLIVATGCTASR  176 (488)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~--~v~~---~~g~~i~yd~lVlAtG~~~~~  176 (488)
                      ++.|++++.++.|.+++.++.  .+.+   .++.++.+|.+|+|+|..|..
T Consensus       223 ~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~  273 (463)
T PRK06370        223 EREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNT  273 (463)
T ss_pred             HhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCC
Confidence            788999999999999987543  3333   234579999999999988763

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.19  E-value=1.5e-06  Score=84.89  Aligned_cols=39  Identities=23%  Similarity=0.446  Sum_probs=31.3

Q ss_pred             CCCeEEeCCcEEEEeCCCc---EEEeCCCcEEEeccEEeccCC
Q 011351          133 KGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGC  172 (488)
Q Consensus       133 ~~i~~~~~~~v~~id~~~~---~v~~~~g~~i~yd~lVlAtG~  172 (488)
                      .+++++. ++|+++..++.   -|.+.+|+.+.+|.+|+|||.
T Consensus       109 ~nl~i~~-~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt  150 (392)
T PF01134_consen  109 PNLTIIQ-GEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT  150 (392)
T ss_dssp             TTEEEEE-S-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred             CCeEEEE-cccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence            5889875 69999988765   467889999999999999997

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=98.18  E-value=7.6e-06  Score=89.01  Aligned_cols=97  Identities=19%  Similarity=0.419  Sum_probs=73.6

Q ss_pred             EEEECCCHHHHHHHHHHHhCC---CcEEEEecCCcCc------ccccC-----HHHHHHHHHHHHHcCcEEEcCCeEEEE
Q 011351          210 VVVVGGGYIGMEVAAAAVGWK---LDTTIIFPENHLL------QRLFT-----PSLAQRYEQLYQQNGVKFVKGASIKNL  275 (488)
Q Consensus       210 vvVvG~G~~g~e~A~~l~~~g---~~v~lv~~~~~~l------~~~~~-----~~~~~~~~~~l~~~GV~v~~~~~v~~i  275 (488)
                      ++|||+|+.|+.+|..|.+++   .+|+++.+.+++.      +..+.     +++.....+.+++.||++++++.|+.+
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I   80 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI   80 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence            589999999999999988764   5899999887642      11111     112222346678899999999999999


Q ss_pred             EeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCCh
Q 011351          276 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  310 (488)
Q Consensus       276 ~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~  310 (488)
                      +..  .+  .|.+.+|+++++|.+|+|||.+|...
T Consensus        81 d~~--~k--~V~~~~g~~~~yD~LVlATGs~p~~p  111 (785)
T TIGR02374        81 DTD--QK--QVITDAGRTLSYDKLILATGSYPFIL  111 (785)
T ss_pred             ECC--CC--EEEECCCcEeeCCEEEECCCCCcCCC
Confidence            853  22  46778898999999999999998754

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.18  E-value=5.5e-06  Score=84.52  Aligned_cols=97  Identities=19%  Similarity=0.218  Sum_probs=72.8

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (488)
                      .++++|||||+.|+..|..|++.|.   +|+|+++.+...   +.+.        .   .+           .....+.+
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~g~---~Vtli~~~~~il---~~~d--------~---~~-----------~~~~~~~l  217 (450)
T TIGR01421       166 PKRVVIVGAGYIAVELAGVLHGLGS---ETHLVIRHERVL---RSFD--------S---MI-----------SETITEEY  217 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---cEEEEecCCCCC---cccC--------H---HH-----------HHHHHHHH
Confidence            5799999999999999999999886   899999775421   0000        0   00           01235667


Q ss_pred             HHCCCeEEeCCcEEEEeCCC---cEEEeCCC-cEEEeccEEeccCCCCC
Q 011351          131 KEKGIEMIYQDPVTSIDIEK---QTLITNSG-KLLKYGSLIVATGCTAS  175 (488)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~---~~v~~~~g-~~i~yd~lVlAtG~~~~  175 (488)
                      ++.+++++.++.+++++.+.   ..++++++ +.+.+|.+++|+|..|.
T Consensus       218 ~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn  266 (450)
T TIGR01421       218 EKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPN  266 (450)
T ss_pred             HHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcC
Confidence            88899999999999987542   24666677 57999999999998876

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=98.18  E-value=2.6e-05  Score=79.94  Aligned_cols=69  Identities=23%  Similarity=0.401  Sum_probs=50.0

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEE---eCCC--cEEEcCEEEEeecCccCChhhhhcCCc
Q 011351          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK---LEDG--STIDADTIVIGIGAKPTVSPFERVGLN  318 (488)
Q Consensus       248 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~---l~~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~  318 (488)
                      +..+...+.+.+++.|++++++++|++++..+++.+ .+.   +.+|  .++.+|.||+|+|.... .+++.+|+.
T Consensus       177 p~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v-~v~~~~~~~g~~~~i~A~~VV~AAG~~s~-~La~~~Gi~  250 (483)
T TIGR01320       177 FGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSW-TVTVKNTRTGGKRTLNTRFVFVGAGGGAL-PLLQKSGIP  250 (483)
T ss_pred             HHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeE-EEEEeeccCCceEEEECCEEEECCCcchH-HHHHHcCCC
Confidence            346777788888889999999999999986544433 232   2334  36899999999998764 566666654

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=98.18  E-value=8.9e-07  Score=89.63  Aligned_cols=117  Identities=22%  Similarity=0.268  Sum_probs=29.6

Q ss_pred             eEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-----CCCc---------c----ccCCCCC---CCC-C
Q 011351           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-----ALTK---------G----YLFPLDK---KPA-R  110 (488)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~-----~l~~---------~----~~~~~~~---~~~-~  110 (488)
                      ||||||||+||++||..+++.|.   +|+|||+.+.......     ....         +    +......   ... .
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~---~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~   77 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGA---KVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQED   77 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS----EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST----------
T ss_pred             CEEEECccHHHHHHHHHHHHCCC---EEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhccccccc
Confidence            79999999999999999999988   8999999986532110     0000         0    0000000   000 0


Q ss_pred             CCCc---ccccCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcE---EEeCC---CcEEEeccEEeccCC
Q 011351          111 LPGF---HTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQT---LITNS---GKLLKYGSLIVATGC  172 (488)
Q Consensus       111 ~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~---v~~~~---g~~i~yd~lVlAtG~  172 (488)
                      ..+.   ...........+.+++.+.|+++++++.|.++..++.+   |++.+   ..++.++.+|-|||-
T Consensus        78 ~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~  148 (428)
T PF12831_consen   78 RYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGD  148 (428)
T ss_dssp             -----------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            0000   00111112233456667789999999999998887643   34433   456999999999994

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=98.18  E-value=4.3e-05  Score=77.97  Aligned_cols=67  Identities=21%  Similarity=0.328  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHH-HcCcEEEcCCeEEEEEeCCCCcEEEEE---eCCCc--EEEcCEEEEeecCccCChhhhhcCCc
Q 011351          250 SLAQRYEQLYQ-QNGVKFVKGASIKNLEAGSDGRVAAVK---LEDGS--TIDADTIVIGIGAKPTVSPFERVGLN  318 (488)
Q Consensus       250 ~~~~~~~~~l~-~~GV~v~~~~~v~~i~~~~~~~v~~v~---l~~g~--~i~~D~vi~a~G~~p~~~~~~~~gl~  318 (488)
                      .+.+.+.+.+. ..|+++++++.|+.++..+++.. .+.   ..+++  ++.+|.||+|.|.... .+++.+|+.
T Consensus       185 ~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w-~v~v~~t~~g~~~~i~Ad~VV~AAGawS~-~La~~~Gi~  257 (497)
T PRK13339        185 ALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGW-EVTVKDRNTGEKREQVADYVFIGAGGGAI-PLLQKSGIP  257 (497)
T ss_pred             HHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCE-EEEEEecCCCceEEEEcCEEEECCCcchH-HHHHHcCCC
Confidence            55666666665 45999999999999986534433 232   34452  6899999999999875 677777664

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=98.17  E-value=4.8e-06  Score=84.79  Aligned_cols=42  Identities=19%  Similarity=0.308  Sum_probs=34.3

Q ss_pred             CCeEEeCCcEEEEeC---------CCcEEEeCCCcEEEeccEEeccCCCCC
Q 011351          134 GIEMIYQDPVTSIDI---------EKQTLITNSGKLLKYGSLIVATGCTAS  175 (488)
Q Consensus       134 ~i~~~~~~~v~~id~---------~~~~v~~~~g~~i~yd~lVlAtG~~~~  175 (488)
                      +++++.+++|++++.         +.-++++.+|+++.+|.||-|-|....
T Consensus       134 ~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~  184 (437)
T TIGR01989       134 NVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSN  184 (437)
T ss_pred             CeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCCh
Confidence            489999999999863         123677889999999999999998754

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=98.17  E-value=5e-06  Score=83.29  Aligned_cols=35  Identities=14%  Similarity=0.335  Sum_probs=32.6

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      +++|+|||||++|+++|..|++.|+   +|+|||+.+.
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~---~v~viE~~~~   36 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKAGI---DNVILERQSR   36 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHCCC---CEEEEECCCC
Confidence            5799999999999999999999998   8999999874

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>TIGR02053 MerA mercuric reductase

Probab=98.17  E-value=5.5e-06  Score=85.05  Aligned_cols=98  Identities=19%  Similarity=0.337  Sum_probs=71.6

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (488)
                      .++++|||||+.|+.+|..|++.|.   +|+|+++.+...   +..        +.   .+           .....+.+
T Consensus       166 ~~~vvIIGgG~~g~E~A~~l~~~g~---~Vtli~~~~~~l---~~~--------d~---~~-----------~~~l~~~l  217 (463)
T TIGR02053       166 PESLAVIGGGAIGVELAQAFARLGS---EVTILQRSDRLL---PRE--------EP---EI-----------SAAVEEAL  217 (463)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---cEEEEEcCCcCC---Ccc--------CH---HH-----------HHHHHHHH
Confidence            4799999999999999999999886   899999875421   000        00   00           01235567


Q ss_pred             HHCCCeEEeCCcEEEEeCCCc--EEEeC---CCcEEEeccEEeccCCCCCc
Q 011351          131 KEKGIEMIYQDPVTSIDIEKQ--TLITN---SGKLLKYGSLIVATGCTASR  176 (488)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~--~v~~~---~g~~i~yd~lVlAtG~~~~~  176 (488)
                      ++.+++++.+++|+.++.++.  .+++.   +++++.+|.+++|+|..|..
T Consensus       218 ~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~  268 (463)
T TIGR02053       218 AEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNT  268 (463)
T ss_pred             HHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCC
Confidence            788999999988999876543  34443   23579999999999988763

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=98.16  E-value=6.8e-06  Score=84.29  Aligned_cols=98  Identities=15%  Similarity=0.295  Sum_probs=73.4

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (488)
                      .++++|||+|..|+.+|..|++.|.   +|+++++.+...           ......   .           .....+.+
T Consensus       177 ~~~vvVIGgG~ig~E~A~~l~~~g~---~Vtli~~~~~~l-----------~~~d~~---~-----------~~~l~~~L  228 (466)
T PRK07845        177 PEHLIVVGSGVTGAEFASAYTELGV---KVTLVSSRDRVL-----------PGEDAD---A-----------AEVLEEVF  228 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEEcCCcCC-----------CCCCHH---H-----------HHHHHHHH
Confidence            4689999999999999999999876   899999765421           000000   0           01245667


Q ss_pred             HHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCCCc
Q 011351          131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR  176 (488)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~~~  176 (488)
                      ++.+++++.++++.+++.+..  .+.+.+|+++++|.+++|+|..|..
T Consensus       229 ~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~  276 (466)
T PRK07845        229 ARRGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNT  276 (466)
T ss_pred             HHCCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCC
Confidence            889999999989999865433  4566788889999999999988763

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=98.16  E-value=1.1e-05  Score=79.15  Aligned_cols=99  Identities=23%  Similarity=0.433  Sum_probs=77.2

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCcCccccc----------CHHHHHHHHHHHHHcC-cEEEcCCeEE
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQRLF----------TPSLAQRYEQLYQQNG-VKFVKGASIK  273 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g--~~v~lv~~~~~~l~~~~----------~~~~~~~~~~~l~~~G-V~v~~~~~v~  273 (488)
                      .+++||+|||+.|+.++..|.+.-  .++++|++.+..+-..+          ..++...+.+.+++.+ |+++.+ +|+
T Consensus         3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~-~V~   81 (405)
T COG1252           3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQG-EVT   81 (405)
T ss_pred             CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEE-EEE
Confidence            578999999999999999999874  88999999976543221          1234455777788666 999877 688


Q ss_pred             EEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCCh
Q 011351          274 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  310 (488)
Q Consensus       274 ~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~  310 (488)
                      .|+.+ ..   .|.+.++.++++|.+|+++|..++..
T Consensus        82 ~ID~~-~k---~V~~~~~~~i~YD~LVvalGs~~~~f  114 (405)
T COG1252          82 DIDRD-AK---KVTLADLGEISYDYLVVALGSETNYF  114 (405)
T ss_pred             EEccc-CC---EEEeCCCccccccEEEEecCCcCCcC
Confidence            98754 22   57788877899999999999998753

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=98.15  E-value=7.3e-06  Score=82.28  Aligned_cols=35  Identities=14%  Similarity=0.292  Sum_probs=32.5

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      +.||+|||||++|+++|..|++.|+   +|+|+|+.+.
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~G~---~v~v~E~~~~   36 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLAGI---DSVVLERRSR   36 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhcCC---CEEEEEcCCc
Confidence            5789999999999999999999988   8999999874

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=98.14  E-value=2.2e-05  Score=80.66  Aligned_cols=50  Identities=22%  Similarity=0.388  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeec
Q 011351          251 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG  304 (488)
Q Consensus       251 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G  304 (488)
                      +.+.+.+.+.+  .++++++.|++|+..++ .+ .|.+.+|+++.+|.||+++.
T Consensus       228 l~~~l~~~l~~--~~i~~~~~V~~I~~~~~-~~-~v~~~~g~~~~ad~VI~a~p  277 (463)
T PRK12416        228 IIDRLEEVLTE--TVVKKGAVTTAVSKQGD-RY-EISFANHESIQADYVVLAAP  277 (463)
T ss_pred             HHHHHHHhccc--ccEEcCCEEEEEEEcCC-EE-EEEECCCCEEEeCEEEECCC
Confidence            34444444433  57999999999987544 33 57778888899999999975

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.14  E-value=7.3e-06  Score=84.33  Aligned_cols=98  Identities=14%  Similarity=0.276  Sum_probs=71.5

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      ..++|+|||||+.|+.+|..|++.|.   +|+|+++.+...   +..        +   ..+           .....+.
T Consensus       182 ~~~~vvVvGgG~~g~E~A~~l~~~g~---~Vtli~~~~~~l---~~~--------d---~~~-----------~~~~~~~  233 (475)
T PRK06327        182 VPKKLAVIGAGVIGLELGSVWRRLGA---EVTILEALPAFL---AAA--------D---EQV-----------AKEAAKA  233 (475)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCC---eEEEEeCCCccC---CcC--------C---HHH-----------HHHHHHH
Confidence            34799999999999999999999876   899999876421   000        0   000           0123456


Q ss_pred             HHHCCCeEEeCCcEEEEeCCCc--EEEeCC--C--cEEEeccEEeccCCCCC
Q 011351          130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNS--G--KLLKYGSLIVATGCTAS  175 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~~--g--~~i~yd~lVlAtG~~~~  175 (488)
                      +++.+++++.+++|++++.+..  .+.+.+  |  +.+++|.|++|+|..|.
T Consensus       234 l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~  285 (475)
T PRK06327        234 FTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPN  285 (475)
T ss_pred             HHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccC
Confidence            7788999999999999986644  344333  3  46999999999998876

>TIGR02028 ChlP geranylgeranyl reductase

Probab=98.13  E-value=6e-06  Score=82.86  Aligned_cols=34  Identities=26%  Similarity=0.483  Sum_probs=31.2

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      +||+||||||||++||..|++.|+   +|+|+|+.+.
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~---~V~llE~~~~   34 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGI---QTFLLERKPD   34 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCC---cEEEEecCCC
Confidence            489999999999999999999988   8999998753

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.12  E-value=5.5e-06  Score=82.60  Aligned_cols=34  Identities=24%  Similarity=0.395  Sum_probs=31.1

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      +.||+|||||++|+++|..|++.|+   +|+|+|+.+
T Consensus         1 ~~dV~IvGgG~~Gl~~A~~L~~~G~---~v~l~E~~~   34 (374)
T PRK06617          1 MSNTVILGCGLSGMLTALSFAQKGI---KTTIFESKS   34 (374)
T ss_pred             CccEEEECCCHHHHHHHHHHHcCCC---eEEEecCCC
Confidence            3689999999999999999999988   899999863

>PLN02507 glutathione reductase

Probab=98.12  E-value=9.2e-06  Score=83.85  Aligned_cols=98  Identities=19%  Similarity=0.292  Sum_probs=73.2

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (488)
                      .++++|||||+.|+..|..|++.|.   +|+|+++.+..      +.  . +  +.   .+           .....+.+
T Consensus       203 ~k~vvVIGgG~ig~E~A~~l~~~G~---~Vtli~~~~~~------l~--~-~--d~---~~-----------~~~l~~~l  254 (499)
T PLN02507        203 PKRAVVLGGGYIAVEFASIWRGMGA---TVDLFFRKELP------LR--G-F--DD---EM-----------RAVVARNL  254 (499)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCC---eEEEEEecCCc------Cc--c-c--CH---HH-----------HHHHHHHH
Confidence            4799999999999999999999876   89999976531      00  0 0  00   00           01234567


Q ss_pred             HHCCCeEEeCCcEEEEeCCC--cEEEeCCCcEEEeccEEeccCCCCCc
Q 011351          131 KEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASR  176 (488)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~--~~v~~~~g~~i~yd~lVlAtG~~~~~  176 (488)
                      ++.+++++.++.|.+++.+.  ..+.+.+|+++++|.+++|+|..|..
T Consensus       255 ~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~  302 (499)
T PLN02507        255 EGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNT  302 (499)
T ss_pred             HhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCC
Confidence            88899999999999997543  34666678889999999999988753

>PRK06475 salicylate hydroxylase; Provisional

Probab=98.12  E-value=8.4e-06  Score=82.07  Aligned_cols=34  Identities=26%  Similarity=0.281  Sum_probs=31.7

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      .+|+|||||+||+++|..|++.|+   +|+|+|+.+.
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~---~V~i~E~~~~   36 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGW---AVTIIEKAQE   36 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCC---cEEEEecCCc
Confidence            689999999999999999999988   8999999864

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=98.12  E-value=1.6e-05  Score=86.67  Aligned_cols=100  Identities=19%  Similarity=0.438  Sum_probs=74.9

Q ss_pred             CeEEEECCCHHHHHHHHHHHhC----CCcEEEEecCCcCc------ccccC----HHHHHHHHHHHHHcCcEEEcCCeEE
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGW----KLDTTIIFPENHLL------QRLFT----PSLAQRYEQLYQQNGVKFVKGASIK  273 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~----g~~v~lv~~~~~~l------~~~~~----~~~~~~~~~~l~~~GV~v~~~~~v~  273 (488)
                      ++++|||+|+.|+.+|..|.+.    +.+|+++.+.+++.      +..+.    .++.....+.+++.||+++.++.+.
T Consensus         4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V~   83 (847)
T PRK14989          4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERAI   83 (847)
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEEE
Confidence            5899999999999999999764    36899998887643      11111    1222223456788899999999999


Q ss_pred             EEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChh
Q 011351          274 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP  311 (488)
Q Consensus       274 ~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~  311 (488)
                      .++..  .+  .|.+.+|+++.+|.+|+|||.+|....
T Consensus        84 ~Id~~--~~--~V~~~~G~~i~yD~LVIATGs~p~~p~  117 (847)
T PRK14989         84 TINRQ--EK--VIHSSAGRTVFYDKLIMATGSYPWIPP  117 (847)
T ss_pred             EEeCC--Cc--EEEECCCcEEECCEEEECCCCCcCCCC
Confidence            99753  22  467788889999999999999987543

>PRK07236 hypothetical protein; Provisional

Probab=98.12  E-value=2.4e-05  Score=78.38  Aligned_cols=102  Identities=22%  Similarity=0.321  Sum_probs=73.3

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc-----ccCHHHHHHHH------------------------
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----LFTPSLAQRYE------------------------  256 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~-----~~~~~~~~~~~------------------------  256 (488)
                      ...+|+|||+|+.|+.+|..|++.|.+|+++++.+.....     .+.+...+.+.                        
T Consensus         5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g   84 (386)
T PRK07236          5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDG   84 (386)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCC
Confidence            3478999999999999999999999999999988643321     01222222221                        


Q ss_pred             -------------------HHHHH--cCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCC
Q 011351          257 -------------------QLYQQ--NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  309 (488)
Q Consensus       257 -------------------~~l~~--~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~  309 (488)
                                         +.|.+  .++++++++++++++..+ +.+ .+.+++|+++.+|+||.|-|.....
T Consensus        85 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~-~~v-~v~~~~g~~~~ad~vIgADG~~S~v  156 (386)
T PRK07236         85 RVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDG-DRV-TARFADGRRETADLLVGADGGRSTV  156 (386)
T ss_pred             CEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecC-CeE-EEEECCCCEEEeCEEEECCCCCchH
Confidence                               11111  135689999999998653 333 5788999999999999999987643

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=98.12  E-value=6.6e-07  Score=88.32  Aligned_cols=35  Identities=26%  Similarity=0.390  Sum_probs=30.4

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   89 (488)
                      ++|+|||||+||+++|..|+++|+   +|+|||+.+..
T Consensus         2 ~dV~IvGaG~aGl~~A~~L~~~G~---~v~i~E~~~~~   36 (356)
T PF01494_consen    2 YDVAIVGAGPAGLAAALALARAGI---DVTIIERRPDP   36 (356)
T ss_dssp             EEEEEE--SHHHHHHHHHHHHTTC---EEEEEESSSSC
T ss_pred             ceEEEECCCHHHHHHHHHHHhccc---ccccchhcccc
Confidence            589999999999999999999998   89999998753

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.10  E-value=1.1e-05  Score=82.85  Aligned_cols=98  Identities=15%  Similarity=0.221  Sum_probs=70.5

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      ..++++|||||+.|+..|..|++.|.   +|+||++.+...   +..        +.   .+           .....+.
T Consensus       173 ~~~~vvIIGgG~ig~E~A~~l~~~G~---~Vtlie~~~~il---~~~--------d~---~~-----------~~~l~~~  224 (466)
T PRK06115        173 VPKHLVVIGAGVIGLELGSVWRRLGA---QVTVVEYLDRIC---PGT--------DT---ET-----------AKTLQKA  224 (466)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCC---eEEEEeCCCCCC---CCC--------CH---HH-----------HHHHHHH
Confidence            35799999999999999999999886   899999765421   000        00   00           0124566


Q ss_pred             HHHCCCeEEeCCcEEEEeCCCc--EEEeC---C--CcEEEeccEEeccCCCCC
Q 011351          130 YKEKGIEMIYQDPVTSIDIEKQ--TLITN---S--GKLLKYGSLIVATGCTAS  175 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~---~--g~~i~yd~lVlAtG~~~~  175 (488)
                      +++.+++++.++.|.++..+..  .+.+.   +  ++.+++|.|++|+|..|.
T Consensus       225 l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn  277 (466)
T PRK06115        225 LTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPY  277 (466)
T ss_pred             HHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccc
Confidence            7788999999999999976433  23332   2  357999999999998765

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=98.10  E-value=7.1e-06  Score=85.65  Aligned_cols=36  Identities=25%  Similarity=0.533  Sum_probs=32.9

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      +.++||+|||||+.|+++|+.|+++|.   +|+|||+++
T Consensus         4 ~~~~DVvIIGGGi~G~~iA~~La~rG~---~V~LlEk~d   39 (546)
T PRK11101          4 SQETDVIIIGGGATGAGIARDCALRGL---RCILVERHD   39 (546)
T ss_pred             CccccEEEECcCHHHHHHHHHHHHcCC---eEEEEECCC
Confidence            346899999999999999999999987   899999975

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=98.09  E-value=1.1e-05  Score=85.35  Aligned_cols=37  Identities=32%  Similarity=0.348  Sum_probs=32.9

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      ....||||||||.||++||.++++.|.   +|+||||...
T Consensus        27 ~~~~DVlVIG~G~AGl~AAi~Aa~~G~---~V~lveK~~~   63 (617)
T PTZ00139         27 DHTYDAVVVGAGGAGLRAALGLVELGY---KTACISKLFP   63 (617)
T ss_pred             ccccCEEEECccHHHHHHHHHHHHcCC---cEEEEeccCC
Confidence            346799999999999999999999876   8999999863

>TIGR03452 mycothione_red mycothione reductase

Probab=98.09  E-value=1.3e-05  Score=81.85  Aligned_cols=96  Identities=27%  Similarity=0.379  Sum_probs=69.9

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (488)
                      .++++|||||+.|+..|..|++.|.   +|+||++.+...   +.+.        .   .+           .....+ +
T Consensus       169 ~k~vvVIGgG~ig~E~A~~l~~~G~---~Vtli~~~~~ll---~~~d--------~---~~-----------~~~l~~-~  219 (452)
T TIGR03452       169 PESLVIVGGGYIAAEFAHVFSALGT---RVTIVNRSTKLL---RHLD--------E---DI-----------SDRFTE-I  219 (452)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC---cEEEEEccCccc---cccC--------H---HH-----------HHHHHH-H
Confidence            4799999999999999999999876   899999875421   0000        0   00           001122 2


Q ss_pred             HHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCCC
Q 011351          131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  175 (488)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~~  175 (488)
                      .+.+++++.++.|.+++.+..  .+++.+|+++.+|.+++|+|..|.
T Consensus       220 ~~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn  266 (452)
T TIGR03452       220 AKKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPN  266 (452)
T ss_pred             HhcCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcC
Confidence            346899999999999986543  455667888999999999998875

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=98.08  E-value=1.8e-05  Score=81.20  Aligned_cols=59  Identities=20%  Similarity=0.300  Sum_probs=44.9

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCC--CC--cEEEEEeCCC---cEEEcCEEEEeecCc
Q 011351          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS--DG--RVAAVKLEDG---STIDADTIVIGIGAK  306 (488)
Q Consensus       248 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~--~~--~v~~v~l~~g---~~i~~D~vi~a~G~~  306 (488)
                      +..+.+.+.+.|++.|.+|+++++|++|+.++  ++  +++++.+.+|   +++.+|.||+|++..
T Consensus       218 ~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~  283 (474)
T TIGR02732       218 DKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVP  283 (474)
T ss_pred             chhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChH
Confidence            33456667888899999999999999998643  22  3666667554   569999999998854

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=98.07  E-value=1.5e-05  Score=78.69  Aligned_cols=101  Identities=17%  Similarity=0.159  Sum_probs=69.2

Q ss_pred             hcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccc--------cCHHHHHHHHHHHHHcCcEEEcCCeEEEEE
Q 011351          205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL--------FTPSLAQRYEQLYQQNGVKFVKGASIKNLE  276 (488)
Q Consensus       205 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~--------~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~  276 (488)
                      ..+++++|||+|+.|+++|..|++.|.+|+++++.+.+....        .+.+......+.+.+.|++++.++.+..+.
T Consensus        16 ~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v~~~~   95 (352)
T PRK12770         16 PTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAGVVFHTRTKVCCGE   95 (352)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCCeEEecCcEEeecc
Confidence            357899999999999999999999999999999987654211        122333334456677799999998876553


Q ss_pred             e---CCCCcEE--EEEeCCCcEEEcCEEEEeecCc
Q 011351          277 A---GSDGRVA--AVKLEDGSTIDADTIVIGIGAK  306 (488)
Q Consensus       277 ~---~~~~~v~--~v~l~~g~~i~~D~vi~a~G~~  306 (488)
                      .   ...+...  .+..+ +..+.+|.||+|||..
T Consensus        96 ~~~~~~~~~~~~~~~~~~-~~~~~~d~lviAtGs~  129 (352)
T PRK12770         96 PLHEEEGDEFVERIVSLE-ELVKKYDAVLIATGTW  129 (352)
T ss_pred             ccccccccccccccCCHH-HHHhhCCEEEEEeCCC
Confidence            2   1111110  01111 2247899999999984

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=98.07  E-value=4.7e-06  Score=60.47  Aligned_cols=31  Identities=26%  Similarity=0.358  Sum_probs=28.0

Q ss_pred             EEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351           56 IVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (488)
Q Consensus        56 IIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   89 (488)
                      |||||++||++|..|++.|+   +|+|+|+++..
T Consensus         1 IiGaG~sGl~aA~~L~~~g~---~v~v~E~~~~~   31 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGY---RVTVFEKNDRL   31 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTS---EEEEEESSSSS
T ss_pred             CEeeCHHHHHHHHHHHHCCC---cEEEEecCccc
Confidence            89999999999999999987   89999999875

...

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.06  E-value=5.7e-05  Score=72.43  Aligned_cols=97  Identities=21%  Similarity=0.295  Sum_probs=73.4

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc-------------------------------------------
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-------------------------------------------  245 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~-------------------------------------------  245 (488)
                      .|+|||+|+.|+-+|..|++.|.+|+++++.+.....                                           
T Consensus         2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (295)
T TIGR02032         2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPIE   81 (295)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEeccC
Confidence            4899999999999999999999999999987532110                                           


Q ss_pred             ------ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC-CCcEEEcCEEEEeecCcc
Q 011351          246 ------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DGSTIDADTIVIGIGAKP  307 (488)
Q Consensus       246 ------~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~-~g~~i~~D~vi~a~G~~p  307 (488)
                            .....+.+.+.+.+++.|++++.+++++++...++ .+ .+.+. ++.++.+|.||.|+|...
T Consensus        82 ~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~-~~-~~~~~~~~~~~~a~~vv~a~G~~s  148 (295)
T TIGR02032        82 TELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDD-RV-VVIVRGGEGTVTAKIVIGADGSRS  148 (295)
T ss_pred             CCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCC-EE-EEEEcCccEEEEeCEEEECCCcch
Confidence                  01123556677778888999999999999875433 33 33333 345799999999999875

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=98.06  E-value=2.5e-05  Score=85.05  Aligned_cols=91  Identities=27%  Similarity=0.294  Sum_probs=68.4

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc--------ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  277 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~--------~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~  277 (488)
                      .+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...        .++.+....-.+.+++.||++++++.+ .+. 
T Consensus       538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~V-di~-  615 (1019)
T PRK09853        538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSP-DLT-  615 (1019)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCcee-EEE-
Confidence            4689999999999999999999999999999987654221        123344455556778889999999866 222 


Q ss_pred             CCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351          278 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  308 (488)
Q Consensus       278 ~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~  308 (488)
                                +++.+...+|.||+|||..+.
T Consensus       616 ----------le~L~~~gYDaVILATGA~~~  636 (1019)
T PRK09853        616 ----------VEQLKNEGYDYVVVAIGADKN  636 (1019)
T ss_pred             ----------hhhheeccCCEEEECcCCCCC
Confidence                      222334568999999999864

>PTZ00052 thioredoxin reductase; Provisional

Probab=98.06  E-value=1.6e-05  Score=82.12  Aligned_cols=96  Identities=16%  Similarity=0.213  Sum_probs=71.1

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (488)
                      .++++|||||+.|+..|..|++.|.   +|+|++....  .  +.+..        .   +           .....+.+
T Consensus       182 ~~~vvIIGgG~iG~E~A~~l~~~G~---~Vtli~~~~~--l--~~~d~--------~---~-----------~~~l~~~l  232 (499)
T PTZ00052        182 PGKTLIVGASYIGLETAGFLNELGF---DVTVAVRSIP--L--RGFDR--------Q---C-----------SEKVVEYM  232 (499)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---cEEEEEcCcc--c--ccCCH--------H---H-----------HHHHHHHH
Confidence            4689999999999999999999886   8999975311  1  10100        0   0           12345677


Q ss_pred             HHCCCeEEeCCcEEEEeCCC--cEEEeCCCcEEEeccEEeccCCCCC
Q 011351          131 KEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTAS  175 (488)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~--~~v~~~~g~~i~yd~lVlAtG~~~~  175 (488)
                      ++.+++++.++.+..+....  ..+.+.+|+++.+|.+++|+|..|.
T Consensus       233 ~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn  279 (499)
T PTZ00052        233 KEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPD  279 (499)
T ss_pred             HHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCC
Confidence            88899999998888776533  3466677888999999999998875

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=98.05  E-value=1.3e-05  Score=81.03  Aligned_cols=98  Identities=17%  Similarity=0.299  Sum_probs=77.2

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (488)
                      .++++|||+|+.|+.+|..|++.|.   +|+++|..+...-.       .+.      ..+           .....+.+
T Consensus       136 ~~~v~vvG~G~~gle~A~~~~~~G~---~v~l~e~~~~~~~~-------~~~------~~~-----------~~~~~~~l  188 (415)
T COG0446         136 PKDVVVVGAGPIGLEAAEAAAKRGK---KVTLIEAADRLGGQ-------LLD------PEV-----------AEELAELL  188 (415)
T ss_pred             cCeEEEECCcHHHHHHHHHHHHcCC---eEEEEEcccccchh-------hhh------HHH-----------HHHHHHHH
Confidence            5799999999999999999999997   89999988763211       000      000           12356778


Q ss_pred             HHCCCeEEeCCcEEEEeCCCcE-----EEeCCCcEEEeccEEeccCCCCC
Q 011351          131 KEKGIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTAS  175 (488)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~~-----v~~~~g~~i~yd~lVlAtG~~~~  175 (488)
                      +.++++++++..+..++...+.     +...++..+++|.+++++|..|.
T Consensus       189 ~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~  238 (415)
T COG0446         189 EKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPN  238 (415)
T ss_pred             HHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeeccccc
Confidence            8899999999999999987543     56778888999999999998874

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.05  E-value=1.6e-05  Score=81.20  Aligned_cols=98  Identities=18%  Similarity=0.341  Sum_probs=71.6

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      ..++++|||||+.|+..|..|++.|.   +|+|+++.+...   |..        ..   .+           .....+.
T Consensus       157 ~~~~v~ViGgG~~g~E~A~~l~~~g~---~Vtli~~~~~~l---~~~--------~~---~~-----------~~~l~~~  208 (441)
T PRK08010        157 LPGHLGILGGGYIGVEFASMFANFGS---KVTILEAASLFL---PRE--------DR---DI-----------ADNIATI  208 (441)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHCCC---eEEEEecCCCCC---CCc--------CH---HH-----------HHHHHHH
Confidence            34699999999999999999999876   899999865421   000        00   00           0123566


Q ss_pred             HHHCCCeEEeCCcEEEEeCCCcE--EEeCCCcEEEeccEEeccCCCCCc
Q 011351          130 YKEKGIEMIYQDPVTSIDIEKQT--LITNSGKLLKYGSLIVATGCTASR  176 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~~--v~~~~g~~i~yd~lVlAtG~~~~~  176 (488)
                      +++.|++++.++.+.+++.++..  +.++++ ++.+|.+++|+|..|..
T Consensus       209 l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~~pn~  256 (441)
T PRK08010        209 LRDQGVDIILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGRQPAT  256 (441)
T ss_pred             HHhCCCEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecCCcCC
Confidence            78899999999999999865543  333444 48999999999988753

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=98.05  E-value=1.4e-05  Score=82.11  Aligned_cols=101  Identities=18%  Similarity=0.307  Sum_probs=71.3

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      ..++++|||||+.|+..|..+........+|+|+++.+...   +..        +.   .+           .....+.
T Consensus       186 ~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il---~~~--------d~---~~-----------~~~l~~~  240 (486)
T TIGR01423       186 PPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL---RGF--------DS---TL-----------RKELTKQ  240 (486)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc---ccc--------CH---HH-----------HHHHHHH
Confidence            35789999999999999987765411123899999775421   000        00   00           1234566


Q ss_pred             HHHCCCeEEeCCcEEEEeCCC---cEEEeCCCcEEEeccEEeccCCCCC
Q 011351          130 YKEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGSLIVATGCTAS  175 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~---~~v~~~~g~~i~yd~lVlAtG~~~~  175 (488)
                      +++.+++++.++.+.++....   ..+++.+++++++|.+++|+|..|.
T Consensus       241 L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn  289 (486)
T TIGR01423       241 LRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPR  289 (486)
T ss_pred             HHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcC
Confidence            788999999999999987532   3566677888999999999998765

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=98.04  E-value=4.6e-06  Score=84.52  Aligned_cols=33  Identities=33%  Similarity=0.452  Sum_probs=29.3

Q ss_pred             eEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      ||||||+|.||++||.+++++|.   +|+||||.+.
T Consensus         1 DVvVIG~G~AGl~AA~~Aae~G~---~V~lvek~~~   33 (417)
T PF00890_consen    1 DVVVIGGGLAGLAAAIEAAEAGA---KVLLVEKGPR   33 (417)
T ss_dssp             SEEEE-SSHHHHHHHHHHHHTTT----EEEEESSSG
T ss_pred             CEEEECCCHHHHHHHHHHhhhcC---eEEEEEeecc
Confidence            79999999999999999999987   8999999884

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK07121 hypothetical protein; Validated

Probab=98.04  E-value=0.00014  Score=75.21  Aligned_cols=59  Identities=24%  Similarity=0.309  Sum_probs=45.9

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCC-Cc--EEEc-CEEEEeecCc
Q 011351          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED-GS--TIDA-DTIVIGIGAK  306 (488)
Q Consensus       248 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~-g~--~i~~-D~vi~a~G~~  306 (488)
                      ...+...+.+.+++.|+++++++.++++..++++++.+|...+ ++  .+.+ +.||+|+|--
T Consensus       176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~  238 (492)
T PRK07121        176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGF  238 (492)
T ss_pred             hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCc
Confidence            3456777888888999999999999999865557777776543 32  4778 9999999954

>PRK13748 putative mercuric reductase; Provisional

Probab=98.03  E-value=1.9e-05  Score=83.30  Aligned_cols=96  Identities=20%  Similarity=0.324  Sum_probs=70.3

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (488)
                      .++++|||||+.|+.+|..|++.|.   +|+||++...+       .     ..+.   .+           .....+.+
T Consensus       270 ~~~vvViGgG~ig~E~A~~l~~~g~---~Vtli~~~~~l-------~-----~~d~---~~-----------~~~l~~~l  320 (561)
T PRK13748        270 PERLAVIGSSVVALELAQAFARLGS---KVTILARSTLF-------F-----REDP---AI-----------GEAVTAAF  320 (561)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---EEEEEecCccc-------c-----ccCH---HH-----------HHHHHHHH
Confidence            4799999999999999999999886   89999864211       0     0000   00           02245667


Q ss_pred             HHCCCeEEeCCcEEEEeCCCcE--EEeCCCcEEEeccEEeccCCCCCc
Q 011351          131 KEKGIEMIYQDPVTSIDIEKQT--LITNSGKLLKYGSLIVATGCTASR  176 (488)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~~--v~~~~g~~i~yd~lVlAtG~~~~~  176 (488)
                      ++.|++++.++.+..++.++..  +.+.++ ++.+|.+++|+|..|..
T Consensus       321 ~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~  367 (561)
T PRK13748        321 RAEGIEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGRAPNT  367 (561)
T ss_pred             HHCCCEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCCCcCC
Confidence            8899999999999998765443  344444 59999999999988763

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.02  E-value=1.6e-05  Score=84.30  Aligned_cols=36  Identities=31%  Similarity=0.512  Sum_probs=32.4

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      ...||||||+|.||++||..+++.|.   +|+||||...
T Consensus         7 ~~~DVvVIG~G~AGl~AAl~Aae~G~---~V~lieK~~~   42 (626)
T PRK07803          7 HSYDVVVIGAGGAGLRAAIEARERGL---RVAVVCKSLF   42 (626)
T ss_pred             eeecEEEECcCHHHHHHHHHHHHCCC---CEEEEeccCC
Confidence            35799999999999999999999887   8999999753

>PRK06834 hypothetical protein; Provisional

Probab=98.01  E-value=8.8e-05  Score=76.41  Aligned_cols=107  Identities=23%  Similarity=0.360  Sum_probs=78.8

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc---ccc--cC----------------------------------
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL---QRL--FT----------------------------------  248 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l---~~~--~~----------------------------------  248 (488)
                      ..|+|||+|+.|+-+|..|++.|.+|+++++.+...   ++.  +.                                  
T Consensus         4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~   83 (488)
T PRK06834          4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRLD   83 (488)
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEecc
Confidence            469999999999999999999999999999763211   000  00                                  


Q ss_pred             ----------------HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhh
Q 011351          249 ----------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF  312 (488)
Q Consensus       249 ----------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~  312 (488)
                                      ..+.+.+.+.+++.|++++++++++.++.++++ + .+.+.+|+++.+|+||.|.|..+..  -
T Consensus        84 ~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~-v-~v~~~~g~~i~a~~vVgADG~~S~v--R  159 (488)
T PRK06834         84 ISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTG-V-DVELSDGRTLRAQYLVGCDGGRSLV--R  159 (488)
T ss_pred             cccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCe-E-EEEECCCCEEEeCEEEEecCCCCCc--H
Confidence                            122344556667789999999999999865443 3 4667788889999999999998753  2


Q ss_pred             hhcCCc
Q 011351          313 ERVGLN  318 (488)
Q Consensus       313 ~~~gl~  318 (488)
                      +.+|+.
T Consensus       160 ~~lgi~  165 (488)
T PRK06834        160 KAAGID  165 (488)
T ss_pred             hhcCCC
Confidence            444444

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=98.01  E-value=2e-05  Score=80.66  Aligned_cols=90  Identities=22%  Similarity=0.293  Sum_probs=70.0

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc--------ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  277 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~--------~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~  277 (488)
                      .+++++|||+|+.|+++|..|.+.|.+|+++++.+.+...        ..+.++.....+.+++.||++++++.+..   
T Consensus       139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~---  215 (457)
T PRK11749        139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGR---  215 (457)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCEECC---
Confidence            4689999999999999999999999999999988765211        13556777777888999999999876521   


Q ss_pred             CCCCcEEEEEeCCCcEEEcCEEEEeecCc
Q 011351          278 GSDGRVAAVKLEDGSTIDADTIVIGIGAK  306 (488)
Q Consensus       278 ~~~~~v~~v~l~~g~~i~~D~vi~a~G~~  306 (488)
                             .+.+++.. +.+|.||+|||..
T Consensus       216 -------~v~~~~~~-~~~d~vvlAtGa~  236 (457)
T PRK11749        216 -------DITLDELR-AGYDAVFIGTGAG  236 (457)
T ss_pred             -------ccCHHHHH-hhCCEEEEccCCC
Confidence                   12233333 7899999999986

>PLN02463 lycopene beta cyclase

Probab=98.01  E-value=7e-05  Score=75.86  Aligned_cols=98  Identities=26%  Similarity=0.299  Sum_probs=72.9

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc-ccc----------------------------------------
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-QRL----------------------------------------  246 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l-~~~----------------------------------------  246 (488)
                      -.|+|||+|+.|+-+|..|++.|.+|.++++.+... ++.                                        
T Consensus        29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~~y  108 (447)
T PLN02463         29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDRPY  108 (447)
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccCcc
Confidence            369999999999999999999999999998764211 100                                        


Q ss_pred             ---cCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351          247 ---FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  308 (488)
Q Consensus       247 ---~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~  308 (488)
                         ....+.+.+.+.+.+.|++++ ..+|++++..+++  ..|.+++|+++++|.||.|+|..+.
T Consensus       109 ~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~--~~V~~~dG~~i~A~lVI~AdG~~s~  170 (447)
T PLN02463        109 GRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESK--SLVVCDDGVKIQASLVLDATGFSRC  170 (447)
T ss_pred             eeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCe--EEEEECCCCEEEcCEEEECcCCCcC
Confidence               001233445555667899997 4689999865333  3678899989999999999998764

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=98.00  E-value=2.3e-05  Score=80.57  Aligned_cols=96  Identities=14%  Similarity=0.191  Sum_probs=68.9

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (488)
                      ..+++|||||+.|+.+|..|++.|.   +|+|+++....    +.+.        ..   +           .....+.+
T Consensus       180 ~~~vvIIGgG~iG~E~A~~l~~~G~---~Vtli~~~~~l----~~~d--------~~---~-----------~~~l~~~L  230 (484)
T TIGR01438       180 PGKTLVVGASYVALECAGFLAGIGL---DVTVMVRSILL----RGFD--------QD---C-----------ANKVGEHM  230 (484)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCC---cEEEEEecccc----cccC--------HH---H-----------HHHHHHHH
Confidence            4689999999999999999999886   89999853111    1000        00   0           01235667


Q ss_pred             HHCCCeEEeCCcEEEEeCCCc--EEEeCCC---cEEEeccEEeccCCCCC
Q 011351          131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSG---KLLKYGSLIVATGCTAS  175 (488)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~--~v~~~~g---~~i~yd~lVlAtG~~~~  175 (488)
                      ++.|++++.++.+..+.....  .+++.++   +++++|.+++|+|..|.
T Consensus       231 ~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn  280 (484)
T TIGR01438       231 EEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDAC  280 (484)
T ss_pred             HHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcC
Confidence            888999999988888765432  4555554   37999999999998765

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK14727 putative mercuric reductase; Provisional

Probab=97.99  E-value=2.4e-05  Score=80.61  Aligned_cols=96  Identities=20%  Similarity=0.363  Sum_probs=69.5

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (488)
                      .++++|||||+.|+..|..|++.|.   +|+|+++....+    ..        +.   .+           .....+.+
T Consensus       188 ~k~vvVIGgG~iG~E~A~~l~~~G~---~Vtlv~~~~~l~----~~--------d~---~~-----------~~~l~~~L  238 (479)
T PRK14727        188 PASLTVIGSSVVAAEIAQAYARLGS---RVTILARSTLLF----RE--------DP---LL-----------GETLTACF  238 (479)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---EEEEEEcCCCCC----cc--------hH---HH-----------HHHHHHHH
Confidence            4789999999999999999999876   899998642110    00        00   00           12245567


Q ss_pred             HHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCCCc
Q 011351          131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR  176 (488)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~~~  176 (488)
                      ++.+++++.++.|..++.+..  .+.+.++ ++.+|.+++|+|..|..
T Consensus       239 ~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~  285 (479)
T PRK14727        239 EKEGIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHANT  285 (479)
T ss_pred             HhCCCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCCCc
Confidence            888999999999988875443  3444444 58999999999988753

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=97.98  E-value=3e-05  Score=79.14  Aligned_cols=33  Identities=27%  Similarity=0.340  Sum_probs=30.7

Q ss_pred             eEEEEcCchHHHHHHHHHHHcC-CCCCcEEEEcCCCC
Q 011351           53 EFVIVGGGNAAGYAARTFVEHG-MADGRLCIVSKEAY   88 (488)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g-~~~~~V~lie~~~~   88 (488)
                      ||||||||.||++||.++++.| .   +|+||||.+.
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~G~~---~V~vlEk~~~   34 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAGAA---NVVLLEKMPV   34 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCc---cEEEEecCCC
Confidence            6999999999999999999998 6   8999999875

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK07045 putative monooxygenase; Reviewed

Probab=97.98  E-value=0.00011  Score=73.75  Aligned_cols=101  Identities=22%  Similarity=0.280  Sum_probs=76.0

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc---------c--------------------------c------
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ---------R--------------------------L------  246 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~---------~--------------------------~------  246 (488)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.+.+..         .                          .      
T Consensus         6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~   85 (388)
T PRK07045          6 VDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDKEL   85 (388)
T ss_pred             eEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCCcE
Confidence            4799999999999999999999999999987643210         0                          0      


Q ss_pred             -----------cC-------HHHHHHHHHHHH-HcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCcc
Q 011351          247 -----------FT-------PSLAQRYEQLYQ-QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  307 (488)
Q Consensus       247 -----------~~-------~~~~~~~~~~l~-~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p  307 (488)
                                 .+       ..+.+.+.+.+. ..|++++++++++.++.++++.+..|.+++|+++.+|+||-|.|...
T Consensus        86 ~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S  165 (388)
T PRK07045         86 IASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARS  165 (388)
T ss_pred             EEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCCh
Confidence                       00       012233334443 35799999999999987766655578889999999999999999876


Q ss_pred             C
Q 011351          308 T  308 (488)
Q Consensus       308 ~  308 (488)
                      .
T Consensus       166 ~  166 (388)
T PRK07045        166 M  166 (388)
T ss_pred             H
Confidence            4

>PRK07538 hypothetical protein; Provisional

Probab=97.98  E-value=2.1e-05  Score=79.52  Aligned_cols=34  Identities=21%  Similarity=0.324  Sum_probs=31.3

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      +||+|||||+||+++|..|++.|+   +|+|+|+.+.
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~G~---~v~v~E~~~~   34 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQRGI---EVVVFEAAPE   34 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCC---cEEEEEcCCc
Confidence            379999999999999999999988   8999999864

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=97.96  E-value=3e-05  Score=85.39  Aligned_cols=93  Identities=24%  Similarity=0.201  Sum_probs=72.3

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc--------ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  277 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~--------~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~  277 (488)
                      .+++|+|||+|+.|+.+|..|++.|++|+++++.+.+-..        .++.++.+...+.+++.||+|++++.+-.   
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG~---  381 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGK---  381 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEecc---
Confidence            4799999999999999999999999999999987643321        13456666667788999999998864311   


Q ss_pred             CCCCcEEEEEeCCCcEEEcCEEEEeecCc-cC
Q 011351          278 GSDGRVAAVKLEDGSTIDADTIVIGIGAK-PT  308 (488)
Q Consensus       278 ~~~~~v~~v~l~~g~~i~~D~vi~a~G~~-p~  308 (488)
                             .+.+++.....+|.|++|||.. |.
T Consensus       382 -------dit~~~l~~~~yDAV~LAtGA~~pr  406 (944)
T PRK12779        382 -------TATLEDLKAAGFWKIFVGTGAGLPT  406 (944)
T ss_pred             -------EEeHHHhccccCCEEEEeCCCCCCC
Confidence                   3555665556799999999995 53

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=97.96  E-value=0.00011  Score=73.81  Aligned_cols=108  Identities=27%  Similarity=0.367  Sum_probs=79.1

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcC-------------c-cc---------------------------
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL-------------L-QR---------------------------  245 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~-------------l-~~---------------------------  245 (488)
                      ...|+|||+|+.|+-+|..|++.|.+|+++++.+..             + +.                           
T Consensus         6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~   85 (392)
T PRK08773          6 RRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRMRV   85 (392)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEEEE
Confidence            357999999999999999999999999999975311             0 00                           


Q ss_pred             ---------cc---------------CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEE
Q 011351          246 ---------LF---------------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI  301 (488)
Q Consensus       246 ---------~~---------------~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~  301 (488)
                               .+               ...+.+.+.+.+++.|++++.++++++++.++ +.+ .+.+++|+++.+|.||.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~-~~v-~v~~~~g~~~~a~~vV~  163 (392)
T PRK08773         86 WDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDA-DRV-RLRLDDGRRLEAALAIA  163 (392)
T ss_pred             EeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecC-CeE-EEEECCCCEEEeCEEEE
Confidence                     00               01233445556677899999999999998643 333 47778888999999999


Q ss_pred             eecCccCChhhhhcCCc
Q 011351          302 GIGAKPTVSPFERVGLN  318 (488)
Q Consensus       302 a~G~~p~~~~~~~~gl~  318 (488)
                      |.|..+.  +.+.+++.
T Consensus       164 AdG~~S~--vr~~~g~~  178 (392)
T PRK08773        164 ADGAAST--LRELAGLP  178 (392)
T ss_pred             ecCCCch--HHHhhcCC
Confidence            9999874  33444443

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=97.96  E-value=2.5e-05  Score=80.26  Aligned_cols=98  Identities=15%  Similarity=0.294  Sum_probs=70.0

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      ..++++|||||+.|+..|..|++.|.   +|+++++.+...   +.+        +.   .+           .....+.
T Consensus       168 ~~k~v~VIGgG~~g~E~A~~l~~~g~---~Vtli~~~~~~l---~~~--------d~---~~-----------~~~~~~~  219 (460)
T PRK06292        168 LPKSLAVIGGGVIGLELGQALSRLGV---KVTVFERGDRIL---PLE--------DP---EV-----------SKQAQKI  219 (460)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCC---cEEEEecCCCcC---cch--------hH---HH-----------HHHHHHH
Confidence            35799999999999999999999876   899999875421   000        00   00           1123455


Q ss_pred             HHHCCCeEEeCCcEEEEeCCCc-EEEe--CCC--cEEEeccEEeccCCCCCc
Q 011351          130 YKEKGIEMIYQDPVTSIDIEKQ-TLIT--NSG--KLLKYGSLIVATGCTASR  176 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~-~v~~--~~g--~~i~yd~lVlAtG~~~~~  176 (488)
                      +++. +++++++++.+++.... .+++  .++  +++++|.+++|+|..|..
T Consensus       220 l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~  270 (460)
T PRK06292        220 LSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNT  270 (460)
T ss_pred             Hhhc-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCC
Confidence            6777 99999999999976543 3442  233  469999999999988763

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.96  E-value=3.4e-05  Score=81.16  Aligned_cols=35  Identities=26%  Similarity=0.326  Sum_probs=31.9

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      ...||||||+|.||++||.++++.|.   +|+|+||..
T Consensus         6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~---~V~lleK~~   40 (588)
T PRK08958          6 REFDAVVIGAGGAGMRAALQISQSGQ---SCALLSKVF   40 (588)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCC---cEEEEEccC
Confidence            35799999999999999999999876   899999985

>PTZ00058 glutathione reductase; Provisional

Probab=97.96  E-value=2.9e-05  Score=80.75  Aligned_cols=97  Identities=18%  Similarity=0.211  Sum_probs=70.4

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (488)
                      .++|+|||||+.|+..|..|++.|.   +|+|+++.+...   +..        +.   .+           .....+.+
T Consensus       237 pk~VvIIGgG~iGlE~A~~l~~~G~---~Vtli~~~~~il---~~~--------d~---~i-----------~~~l~~~L  288 (561)
T PTZ00058        237 AKRIGIAGSGYIAVELINVVNRLGA---ESYIFARGNRLL---RKF--------DE---TI-----------INELENDM  288 (561)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCC---cEEEEEeccccc---ccC--------CH---HH-----------HHHHHHHH
Confidence            5799999999999999999999886   899999875420   000        00   00           01234567


Q ss_pred             HHCCCeEEeCCcEEEEeCCCc---EEEeCC-CcEEEeccEEeccCCCCC
Q 011351          131 KEKGIEMIYQDPVTSIDIEKQ---TLITNS-GKLLKYGSLIVATGCTAS  175 (488)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~---~v~~~~-g~~i~yd~lVlAtG~~~~  175 (488)
                      ++.+++++.+..+.+++.+..   .+...+ ++++.+|.|++|+|..|.
T Consensus       289 ~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn  337 (561)
T PTZ00058        289 KKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPN  337 (561)
T ss_pred             HHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCC
Confidence            788999999999999986432   233334 457999999999997765

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=97.95  E-value=0.00015  Score=68.15  Aligned_cols=59  Identities=15%  Similarity=0.138  Sum_probs=41.5

Q ss_pred             cCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCcc
Q 011351          247 FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  307 (488)
Q Consensus       247 ~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p  307 (488)
                      .......++++.-..-+=++.+++.|..+..-.+|.  .++-.+|++-.+|.||+|+-...
T Consensus       215 V~ggS~~yvq~laa~~~~~i~t~~~V~~l~rlPdGv--~l~~~~G~s~rFD~vViAth~dq  273 (447)
T COG2907         215 VAGGSRAYVQRLAADIRGRIETRTPVCRLRRLPDGV--VLVNADGESRRFDAVVIATHPDQ  273 (447)
T ss_pred             cccchHHHHHHHhccccceeecCCceeeeeeCCCce--EEecCCCCccccceeeeecChHH
Confidence            444445566665554444589999999998777764  35556798899999999976543

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=97.94  E-value=2.8e-05  Score=72.61  Aligned_cols=50  Identities=16%  Similarity=0.233  Sum_probs=38.9

Q ss_pred             HhHHHHCCCeEEeCCcEEEEeCC-----CcEEEeCCCcEEEeccEEeccCCCCCc
Q 011351          127 PEWYKEKGIEMIYQDPVTSIDIE-----KQTLITNSGKLLKYGSLIVATGCTASR  176 (488)
Q Consensus       127 ~~~~~~~~i~~~~~~~v~~id~~-----~~~v~~~~g~~i~yd~lVlAtG~~~~~  176 (488)
                      ...+++.|+.++.+..|+.+...     ...|.+.+|..+.++++|+++|+....
T Consensus       160 ~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~k  214 (399)
T KOG2820|consen  160 QDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINK  214 (399)
T ss_pred             HHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHh
Confidence            34556789999999888877632     236788899999999999999986543

>PRK10262 thioredoxin reductase; Provisional

Probab=97.91  E-value=0.00019  Score=69.98  Aligned_cols=100  Identities=19%  Similarity=0.285  Sum_probs=69.8

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC---cC--------cc----cccCHHHHHHHHHHHHHcCcEEEcCC
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN---HL--------LQ----RLFTPSLAQRYEQLYQQNGVKFVKGA  270 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~---~~--------l~----~~~~~~~~~~~~~~l~~~GV~v~~~~  270 (488)
                      +.++++|||+|+.|+.+|..+.++|.++++++...   .+        ++    ....+.+.+.+.+.....++++..+ 
T Consensus         5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   83 (321)
T PRK10262          5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD-   83 (321)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEee-
Confidence            46789999999999999999999999998886321   10        01    0112345667777777788888776 


Q ss_pred             eEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCC
Q 011351          271 SIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  309 (488)
Q Consensus       271 ~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~  309 (488)
                      .+..++.. ++.. .+..++ .++.+|.||+|||..|..
T Consensus        84 ~v~~v~~~-~~~~-~v~~~~-~~~~~d~vilAtG~~~~~  119 (321)
T PRK10262         84 HINKVDLQ-NRPF-RLTGDS-GEYTCDALIIATGASARY  119 (321)
T ss_pred             EEEEEEec-CCeE-EEEecC-CEEEECEEEECCCCCCCC
Confidence            46677643 3322 343333 368999999999999863

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=97.91  E-value=0.0002  Score=63.12  Aligned_cols=137  Identities=23%  Similarity=0.345  Sum_probs=88.7

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccc------c-------------------------------CHH
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL------F-------------------------------TPS  250 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~------~-------------------------------~~~  250 (488)
                      ..|+|||+|++|+-.|.+|++.|.+|.+++++-.+-...      |                               +..
T Consensus        31 sDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~e  110 (262)
T COG1635          31 SDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSAE  110 (262)
T ss_pred             ccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHHH
Confidence            569999999999999999999999999999873322110      0                               112


Q ss_pred             HHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC-----------CCcEEEcCEEEEeecCccCCh-hh-hhc--
Q 011351          251 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-----------DGSTIDADTIVIGIGAKPTVS-PF-ERV--  315 (488)
Q Consensus       251 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~-----------~g~~i~~D~vi~a~G~~p~~~-~~-~~~--  315 (488)
                      +...+....-+.|.++.....++.+.-.++.++.++..+           |--.+++++||-+||.....- ++ +..  
T Consensus       111 ~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~~kr~~~  190 (262)
T COG1635         111 FASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFLAKRIPE  190 (262)
T ss_pred             HHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHHHHhccc
Confidence            223333344566899999999998875544477777654           224689999999999876432 22 221  


Q ss_pred             -CCccc-CCC--------EEeCCCCCCCCCCEEEEceecc
Q 011351          316 -GLNSS-VGG--------IQVDGQFRTRMPGIFAIGDVAA  345 (488)
Q Consensus       316 -gl~~~-~g~--------i~vd~~~~t~~~~Ifa~GD~a~  345 (488)
                       ++... .+.        ..|+.+. --+||+|++|=.+.
T Consensus       191 l~~~~~Ge~~mw~e~~E~lvV~~T~-eV~pgL~vaGMa~~  229 (262)
T COG1635         191 LGIEVPGEKSMWAERGEDLVVENTG-EVYPGLYVAGMAVN  229 (262)
T ss_pred             cccccCCCcchhhhHHHHHHHhccc-cccCCeEeehhhHH
Confidence             22211 111        2222222 24799999997664

>PRK08163 salicylate hydroxylase; Provisional

Probab=97.90  E-value=0.00016  Score=72.73  Aligned_cols=100  Identities=17%  Similarity=0.238  Sum_probs=73.4

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc----------------------------------cc-----
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------------------------------LF-----  247 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~----------------------------------~~-----  247 (488)
                      ..+|+|||+|+.|+-+|..|.+.|.+|+++++.+.+...                                  ..     
T Consensus         4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~   83 (396)
T PRK08163          4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVDA   83 (396)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCCC
Confidence            468999999999999999999999999999877432110                                  00     


Q ss_pred             --------C----------------HHHHHHHHHHHHHc-CcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEe
Q 011351          248 --------T----------------PSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG  302 (488)
Q Consensus       248 --------~----------------~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a  302 (488)
                              +                ..+.+.+.+.+.+. ++++++++++++++.++ +.+ .+.+.+|+++.+|.||.|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~-~~v-~v~~~~g~~~~ad~vV~A  161 (396)
T PRK08163         84 EEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDG-DGV-TVFDQQGNRWTGDALIGC  161 (396)
T ss_pred             CEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCC-Cce-EEEEcCCCEEecCEEEEC
Confidence                    0                01222334444444 49999999999998543 333 477888989999999999


Q ss_pred             ecCccC
Q 011351          303 IGAKPT  308 (488)
Q Consensus       303 ~G~~p~  308 (488)
                      .|....
T Consensus       162 dG~~S~  167 (396)
T PRK08163        162 DGVKSV  167 (396)
T ss_pred             CCcChH
Confidence            998764

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=97.90  E-value=0.00022  Score=72.35  Aligned_cols=107  Identities=21%  Similarity=0.371  Sum_probs=76.7

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc--------------cc--------------------------
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------------LF--------------------------  247 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~--------------~~--------------------------  247 (488)
                      -.|+|||+|+.|+-+|..|++.|.+|.++++.+.+..+              .+                          
T Consensus         6 ~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (428)
T PRK10157          6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKSA   85 (428)
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCCCc
Confidence            46999999999999999999999999999876321100              00                          


Q ss_pred             ---------------------CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCc
Q 011351          248 ---------------------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  306 (488)
Q Consensus       248 ---------------------~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~  306 (488)
                                           ...+.+.+.+..++.|++++.+++|+++... ++.+..+. .+|.++.+|.||.|+|..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~-~g~v~~v~-~~g~~i~A~~VI~A~G~~  163 (428)
T PRK10157         86 MTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQR-DGKVVGVE-ADGDVIEAKTVILADGVN  163 (428)
T ss_pred             eeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEe-CCEEEEEE-cCCcEEECCEEEEEeCCC
Confidence                                 0012234556667789999999999998754 45554444 567789999999999985


Q ss_pred             cCChhhhhcCCc
Q 011351          307 PTVSPFERVGLN  318 (488)
Q Consensus       307 p~~~~~~~~gl~  318 (488)
                      .  .+.+.+++.
T Consensus       164 s--~l~~~lgl~  173 (428)
T PRK10157        164 S--ILAEKLGMA  173 (428)
T ss_pred             H--HHHHHcCCC
Confidence            3  455555553

>PRK07190 hypothetical protein; Provisional

Probab=97.89  E-value=0.00035  Score=71.96  Aligned_cols=107  Identities=18%  Similarity=0.314  Sum_probs=77.0

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc----------------------------------------cc-
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------------------------RL-  246 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~----------------------------------------~~-  246 (488)
                      ..|+|||+|++|+-+|..|++.|.+|.++++.+.+..                                        +. 
T Consensus         6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~~i   85 (487)
T PRK07190          6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGKFI   85 (487)
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCceE
Confidence            4699999999999999999999999999987632100                                        00 


Q ss_pred             ---------cC------------HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecC
Q 011351          247 ---------FT------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  305 (488)
Q Consensus       247 ---------~~------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~  305 (488)
                               +.            ..+...+.+.+++.|++++.++++++++.++++ + .+.+.+|+++.|++||.|.|.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~-v-~v~~~~g~~v~a~~vVgADG~  163 (487)
T PRK07190         86 SRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAG-C-LTTLSNGERIQSRYVIGADGS  163 (487)
T ss_pred             eeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe-e-EEEECCCcEEEeCEEEECCCC
Confidence                     00            012234455667789999999999999876444 3 355677888999999999998


Q ss_pred             ccCChhhhhcCCc
Q 011351          306 KPTVSPFERVGLN  318 (488)
Q Consensus       306 ~p~~~~~~~~gl~  318 (488)
                      +..  .-+.+|+.
T Consensus       164 ~S~--vR~~lgi~  174 (487)
T PRK07190        164 RSF--VRNHFNVP  174 (487)
T ss_pred             CHH--HHHHcCCC
Confidence            652  23445554

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=97.89  E-value=4.2e-05  Score=78.02  Aligned_cols=92  Identities=22%  Similarity=0.235  Sum_probs=69.2

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc-------c-cccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------Q-RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  277 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l-------~-~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~  277 (488)
                      .+++++|||+|+.|+.+|..|++.|.+|+++++.+.+.       + ..++.++.....+.+++.||+++++..+..   
T Consensus       132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~---  208 (449)
T TIGR01316       132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLVGK---  208 (449)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEeCCccCC---
Confidence            45789999999999999999999999999999876541       1 014556666667778899999999874410   


Q ss_pred             CCCCcEEEEEeCCCcEEEcCEEEEeecC-ccC
Q 011351          278 GSDGRVAAVKLEDGSTIDADTIVIGIGA-KPT  308 (488)
Q Consensus       278 ~~~~~v~~v~l~~g~~i~~D~vi~a~G~-~p~  308 (488)
                             .+.+.+. ...+|.||+|||. .|.
T Consensus       209 -------~v~~~~~-~~~yd~viiAtGa~~p~  232 (449)
T TIGR01316       209 -------TATLEEL-FSQYDAVFIGTGAGLPK  232 (449)
T ss_pred             -------cCCHHHH-HhhCCEEEEeCCCCCCC
Confidence                   2333333 2579999999998 554

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=97.89  E-value=6e-05  Score=79.99  Aligned_cols=37  Identities=22%  Similarity=0.252  Sum_probs=33.0

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHc-CCCCCcEEEEcCCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKEAY   88 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~-g~~~~~V~lie~~~~   88 (488)
                      +.+.+|+||||||+||++|..|++. |.   +|+|||+.+.
T Consensus        30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi---~v~IiE~~~~   67 (634)
T PRK08294         30 PDEVDVLIVGCGPAGLTLAAQLSAFPDI---TTRIVERKPG   67 (634)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHhcCCCC---cEEEEEcCCC
Confidence            4468999999999999999999995 87   8999999864

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=97.89  E-value=1e-05  Score=71.37  Aligned_cols=37  Identities=22%  Similarity=0.375  Sum_probs=30.3

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   89 (488)
                      ..+||+|||||||||+||++|++.|+   +|+++|++...
T Consensus        16 ~~~DV~IVGaGpaGl~aA~~La~~g~---kV~v~E~~~~~   52 (230)
T PF01946_consen   16 LEYDVAIVGAGPAGLTAAYYLAKAGL---KVAVIERKLSP   52 (230)
T ss_dssp             TEESEEEE--SHHHHHHHHHHHHHTS----EEEEESSSS-
T ss_pred             ccCCEEEECCChhHHHHHHHHHHCCC---eEEEEecCCCC
Confidence            46899999999999999999999988   89999998653

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.88  E-value=3.8e-05  Score=78.90  Aligned_cols=96  Identities=17%  Similarity=0.323  Sum_probs=68.0

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (488)
                      .++++|||||+.|+.+|..|++.|.   +|+||++.+...   |..        +.   .+           .....+.+
T Consensus       174 ~~~vvIiGgG~iG~E~A~~l~~~G~---~Vtlv~~~~~il---~~~--------d~---~~-----------~~~~~~~l  225 (471)
T PRK06467        174 PKRLLVMGGGIIGLEMGTVYHRLGS---EVDVVEMFDQVI---PAA--------DK---DI-----------VKVFTKRI  225 (471)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC---CEEEEecCCCCC---CcC--------CH---HH-----------HHHHHHHH
Confidence            4799999999999999999999987   899999876421   000        00   00           01234455


Q ss_pred             HHCCCeEEeCCcEEEEeCCCc--EEEeCC--C--cEEEeccEEeccCCCCC
Q 011351          131 KEKGIEMIYQDPVTSIDIEKQ--TLITNS--G--KLLKYGSLIVATGCTAS  175 (488)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~--~v~~~~--g--~~i~yd~lVlAtG~~~~  175 (488)
                      ++. ++++.++.|+.+.....  .+.+.+  +  +++++|.+|+|+|..|.
T Consensus       226 ~~~-v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn  275 (471)
T PRK06467        226 KKQ-FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPN  275 (471)
T ss_pred             hhc-eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeeccccc
Confidence            566 99999999998875433  344433  2  36999999999998876

>PRK08244 hypothetical protein; Provisional

Probab=97.88  E-value=0.00016  Score=74.85  Aligned_cols=101  Identities=22%  Similarity=0.343  Sum_probs=73.1

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc--c----------------------------------------
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--R----------------------------------------  245 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~--~----------------------------------------  245 (488)
                      ..|+|||+|+.|+-+|..|.+.|.+|+++++.+....  +                                        
T Consensus         3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~   82 (493)
T PRK08244          3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTRL   82 (493)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccccC
Confidence            3599999999999999999999999999997622110  0                                        


Q ss_pred             -------------ccC-HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCC-cEEEcCEEEEeecCccC
Q 011351          246 -------------LFT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-STIDADTIVIGIGAKPT  308 (488)
Q Consensus       246 -------------~~~-~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g-~~i~~D~vi~a~G~~p~  308 (488)
                                   .++ ..+.+.+.+.+++.|++++.++++++++..+++....+...+| +++.+|+||.|.|....
T Consensus        83 ~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~  160 (493)
T PRK08244         83 DFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSI  160 (493)
T ss_pred             CcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChH
Confidence                         000 1244556666777899999999999998654432222222356 47999999999999764

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=97.88  E-value=0.00017  Score=73.53  Aligned_cols=57  Identities=32%  Similarity=0.588  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351          251 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  308 (488)
Q Consensus       251 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~  308 (488)
                      +.+.+.+...+.||+++.++ |+.+...+++.+..|.+++|+++.+|++|=|+|++..
T Consensus       156 fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~  212 (454)
T PF04820_consen  156 FDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSL  212 (454)
T ss_dssp             HHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred             HHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccch
Confidence            45667777788999999884 7777777788888999999999999999999999753

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PRK07588 hypothetical protein; Provisional

Probab=97.88  E-value=0.00017  Score=72.46  Aligned_cols=98  Identities=22%  Similarity=0.230  Sum_probs=71.4

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc---------cc---------------------------------
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ---------RL---------------------------------  246 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~---------~~---------------------------------  246 (488)
                      +|+|||+|+.|+-+|..|++.|.+|+++++.+.+-.         +.                                 
T Consensus         2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~~   81 (391)
T PRK07588          2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRRK   81 (391)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCEE
Confidence            689999999999999999999999999987643210         00                                 


Q ss_pred             --cC-----------------HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCcc
Q 011351          247 --FT-----------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  307 (488)
Q Consensus       247 --~~-----------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p  307 (488)
                        ++                 ..+.+.+.+.+ ..|+++++++++++++..+ +.+ .+.+++|+++.+|+||-|-|...
T Consensus        82 ~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~-~~~v~i~~~~~v~~i~~~~-~~v-~v~~~~g~~~~~d~vIgADG~~S  158 (391)
T PRK07588         82 ADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAI-DGQVETIFDDSIATIDEHR-DGV-RVTFERGTPRDFDLVIGADGLHS  158 (391)
T ss_pred             EEecHHHccccCCCceEEEEHHHHHHHHHHhh-hcCeEEEeCCEEeEEEECC-CeE-EEEECCCCEEEeCEEEECCCCCc
Confidence              00                 00112222222 3479999999999998653 333 57889999999999999999876


Q ss_pred             CC
Q 011351          308 TV  309 (488)
Q Consensus       308 ~~  309 (488)
                      ..
T Consensus       159 ~v  160 (391)
T PRK07588        159 HV  160 (391)
T ss_pred             cc
Confidence            54

>TIGR00136 gidA glucose-inhibited division protein A

Probab=97.88  E-value=4.1e-05  Score=78.97  Aligned_cols=34  Identities=21%  Similarity=0.344  Sum_probs=30.8

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      +||+|||||+||+.+|..+++.|.   +|+|+++...
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G~---~v~Lie~~~~   34 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMGA---KTLLLTLNLD   34 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCC---CEEEEecccc
Confidence            589999999999999999999987   8999998743

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=97.87  E-value=4.9e-05  Score=80.51  Aligned_cols=65  Identities=15%  Similarity=0.166  Sum_probs=48.4

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCC-CCcEEEEEe---CCCc--EEEcCEEEEeecCccCChhhh
Q 011351          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS-DGRVAAVKL---EDGS--TIDADTIVIGIGAKPTVSPFE  313 (488)
Q Consensus       248 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~-~~~v~~v~l---~~g~--~i~~D~vi~a~G~~p~~~~~~  313 (488)
                      +..+...+.+..++.|++++.++.|+++..++ ++.+..|..   .+++  ++.+|.||+|+|.... .+++
T Consensus       231 p~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~-~l~~  301 (627)
T PLN02464        231 DSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCD-EVRK  301 (627)
T ss_pred             HHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHH-HHHH
Confidence            44677778888899999999999999998653 456666554   2343  5899999999997654 3444

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=97.87  E-value=3.5e-05  Score=75.45  Aligned_cols=100  Identities=21%  Similarity=0.347  Sum_probs=78.1

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      ...+||++|+|+.|+.+|..|+....   +||+|++++.. ..     .  ++..     .+           .....++
T Consensus       212 ~~~~vV~vG~G~ig~Evaa~l~~~~~---~VT~V~~e~~~-~~-----~--lf~~-----~i-----------~~~~~~y  264 (478)
T KOG1336|consen  212 LGGKVVCVGGGFIGMEVAAALVSKAK---SVTVVFPEPWL-LP-----R--LFGP-----SI-----------GQFYEDY  264 (478)
T ss_pred             cCceEEEECchHHHHHHHHHHHhcCc---eEEEEccCccc-hh-----h--hhhH-----HH-----------HHHHHHH
Confidence            36789999999999999999999865   89999998763 11     0  1110     00           1235678


Q ss_pred             HHHCCCeEEeCCcEEEEeCCC--c--EEEeCCCcEEEeccEEeccCCCCCc
Q 011351          130 YKEKGIEMIYQDPVTSIDIEK--Q--TLITNSGKLLKYGSLIVATGCTASR  176 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~--~--~v~~~~g~~i~yd~lVlAtG~~~~~  176 (488)
                      +++.++++++++.+.+++...  +  .|.+.+|+++++|.||+.+|+.|..
T Consensus       265 ~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t  315 (478)
T KOG1336|consen  265 YENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNT  315 (478)
T ss_pred             HHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccccc
Confidence            899999999999888887544  2  5778899999999999999998864

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=97.87  E-value=0.00018  Score=72.51  Aligned_cols=106  Identities=26%  Similarity=0.381  Sum_probs=77.9

Q ss_pred             eEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCcCcc----c-------------------------------------
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQ----R-------------------------------------  245 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g--~~v~lv~~~~~~l~----~-------------------------------------  245 (488)
                      .|+|||+|+.|+-+|..|++.|  .+|+++++.+...+    +                                     
T Consensus         3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~   82 (403)
T PRK07333          3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDSR   82 (403)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeCC
Confidence            5899999999999999999985  89999987532100    0                                     


Q ss_pred             ----------c---------------cCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEE
Q 011351          246 ----------L---------------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV  300 (488)
Q Consensus       246 ----------~---------------~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi  300 (488)
                                .               ....+.+.+.+.+++.|++++.++++++++.++ +.+ .+.+++|+++.+|+||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~-~~v-~v~~~~g~~~~ad~vI  160 (403)
T PRK07333         83 TSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRD-EGV-TVTLSDGSVLEARLLV  160 (403)
T ss_pred             CCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcC-CEE-EEEECCCCEEEeCEEE
Confidence                      0               001234556666777899999999999998643 333 5778889899999999


Q ss_pred             EeecCccCChhhhhcCCc
Q 011351          301 IGIGAKPTVSPFERVGLN  318 (488)
Q Consensus       301 ~a~G~~p~~~~~~~~gl~  318 (488)
                      .|.|....  +.+.+++.
T Consensus       161 ~AdG~~S~--vr~~~g~~  176 (403)
T PRK07333        161 AADGARSK--LRELAGIK  176 (403)
T ss_pred             EcCCCChH--HHHHcCCC
Confidence            99998764  44455554

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=97.85  E-value=0.00024  Score=71.19  Aligned_cols=98  Identities=31%  Similarity=0.364  Sum_probs=75.9

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecC-CcCcccc----------------------------------------
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE-NHLLQRL----------------------------------------  246 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~-~~~l~~~----------------------------------------  246 (488)
                      ..|+|||+|+.|+-+|..|++.|.+|+++++. ..+.+..                                        
T Consensus         3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~~   82 (387)
T COG0654           3 LDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGGR   82 (387)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCCc
Confidence            56999999999999999999999999999986 1111100                                        


Q ss_pred             -------------------cCHHHHHHHHHHHHHcC-cEEEcCCeEEEEEeCCCCcEEEEEeC-CCcEEEcCEEEEeecC
Q 011351          247 -------------------FTPSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAVKLE-DGSTIDADTIVIGIGA  305 (488)
Q Consensus       247 -------------------~~~~~~~~~~~~l~~~G-V~v~~~~~v~~i~~~~~~~v~~v~l~-~g~~i~~D~vi~a~G~  305 (488)
                                         --..+.+.+.+.+.+.+ |+++.+++|+.++.++ +.+. ++++ ||+++.||+||-|-|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~-~~v~-v~l~~dG~~~~a~llVgADG~  160 (387)
T COG0654          83 RLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDG-DGVT-VTLSFDGETLDADLLVGADGA  160 (387)
T ss_pred             eeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcC-CceE-EEEcCCCcEEecCEEEECCCC
Confidence                               00224555666676665 9999999999999754 4444 7777 9999999999999997


Q ss_pred             cc
Q 011351          306 KP  307 (488)
Q Consensus       306 ~p  307 (488)
                      ..
T Consensus       161 ~S  162 (387)
T COG0654         161 NS  162 (387)
T ss_pred             ch
Confidence            64

>PRK05868 hypothetical protein; Validated

Probab=97.84  E-value=0.00021  Score=71.12  Aligned_cols=100  Identities=23%  Similarity=0.217  Sum_probs=72.0

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc------------------------------------------
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------------  245 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~------------------------------------------  245 (488)
                      ++|+|||+|+.|+-+|..|++.|.+|+++++.+.+...                                          
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~   81 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE   81 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCCE
Confidence            47999999999999999999999999999977322110                                          


Q ss_pred             --ccC--H----H--------HHHHHHHHHH---HcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCc
Q 011351          246 --LFT--P----S--------LAQRYEQLYQ---QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  306 (488)
Q Consensus       246 --~~~--~----~--------~~~~~~~~l~---~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~  306 (488)
                        ...  .    .        ....+.+.|.   ..|++++++++++.++.+ ++.+ .+.+++|+++.+|+||-|-|.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~-~~~v-~v~~~dg~~~~adlvIgADG~~  159 (372)
T PRK05868         82 LFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDD-GDSV-RVTFERAAAREFDLVIGADGLH  159 (372)
T ss_pred             EeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEec-CCeE-EEEECCCCeEEeCEEEECCCCC
Confidence              000  0    0        0112223332   358999999999999854 3333 5888999999999999999987


Q ss_pred             cCC
Q 011351          307 PTV  309 (488)
Q Consensus       307 p~~  309 (488)
                      ...
T Consensus       160 S~v  162 (372)
T PRK05868        160 SNV  162 (372)
T ss_pred             chH
Confidence            643

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=97.84  E-value=0.00026  Score=74.62  Aligned_cols=66  Identities=21%  Similarity=0.315  Sum_probs=48.5

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCC-Cc--EEEc-CEEEEeecCcc-CChhhhh
Q 011351          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED-GS--TIDA-DTIVIGIGAKP-TVSPFER  314 (488)
Q Consensus       248 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~-g~--~i~~-D~vi~a~G~~p-~~~~~~~  314 (488)
                      +..+...+.+.+++.||+++.++.++++..+ ++++.+|...+ |+  .+.+ +.||+|+|--. |.+++++
T Consensus       220 G~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n~em~~~  290 (578)
T PRK12843        220 GNALIGRLLYSLRARGVRILTQTDVESLETD-HGRVIGATVVQGGVRRRIRARGGVVLATGGFNRHPQLRRE  290 (578)
T ss_pred             cHHHHHHHHHHHHhCCCEEEeCCEEEEEEee-CCEEEEEEEecCCeEEEEEccceEEECCCCcccCHHHHHH
Confidence            4567778888899999999999999998754 67787776644 33  4676 78999988654 3344444

>PRK12831 putative oxidoreductase; Provisional

Probab=97.83  E-value=5.9e-05  Score=77.16  Aligned_cols=93  Identities=24%  Similarity=0.312  Sum_probs=67.7

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc-------c-ccCH-HHHHHHHHHHHHcCcEEEcCCeEEEEE
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------R-LFTP-SLAQRYEQLYQQNGVKFVKGASIKNLE  276 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~-------~-~~~~-~~~~~~~~~l~~~GV~v~~~~~v~~i~  276 (488)
                      .+++++|||+|+.|+.+|..|++.|.+|+++++.+.+-.       . .++. .+.....+.+++.||++++++.+..  
T Consensus       139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~~--  216 (464)
T PRK12831        139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIETNVVVGK--  216 (464)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHHcCCEEEcCCEECC--
Confidence            568899999999999999999999999999997654311       1 0122 2555566778889999999985521  


Q ss_pred             eCCCCcEEEEEeCCC-cEEEcCEEEEeecC-ccC
Q 011351          277 AGSDGRVAAVKLEDG-STIDADTIVIGIGA-KPT  308 (488)
Q Consensus       277 ~~~~~~v~~v~l~~g-~~i~~D~vi~a~G~-~p~  308 (488)
                              .+.+++. +.+.+|.||+|||. .|.
T Consensus       217 --------~v~~~~~~~~~~~d~viiAtGa~~~~  242 (464)
T PRK12831        217 --------TVTIDELLEEEGFDAVFIGSGAGLPK  242 (464)
T ss_pred             --------cCCHHHHHhccCCCEEEEeCCCCCCC
Confidence                    1223332 24579999999998 454

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=97.82  E-value=0.00024  Score=74.54  Aligned_cols=97  Identities=29%  Similarity=0.427  Sum_probs=73.1

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc------------c---ccCHHHHHHHHHHHHHcCcEEEcCCeE
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------R---LFTPSLAQRYEQLYQQNGVKFVKGASI  272 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~------------~---~~~~~~~~~~~~~l~~~GV~v~~~~~v  272 (488)
                      ..|+|||||+.|+.+|..+++.|.+|+++++.. +..            .   ...+.+.+.+.+.+++.|++++ +..+
T Consensus         5 yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~-~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~-~~~V   82 (555)
T TIGR03143         5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD-FGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFL-QAEV   82 (555)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEe-ccEE
Confidence            469999999999999999999999999998753 110            0   0124566777778888899986 5678


Q ss_pred             EEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCC
Q 011351          273 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  309 (488)
Q Consensus       273 ~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~  309 (488)
                      ..++..  +....+.+.++ ++.+|.+|+|||.+|..
T Consensus        83 ~~i~~~--~~~~~V~~~~g-~~~a~~lVlATGa~p~~  116 (555)
T TIGR03143        83 LDVDFD--GDIKTIKTARG-DYKTLAVLIATGASPRK  116 (555)
T ss_pred             EEEEec--CCEEEEEecCC-EEEEeEEEECCCCccCC
Confidence            888753  23334666565 58999999999998864

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=97.82  E-value=0.00033  Score=72.50  Aligned_cols=137  Identities=22%  Similarity=0.294  Sum_probs=82.6

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccc------------------------------c---------
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL------------------------------F---------  247 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~------------------------------~---------  247 (488)
                      .|+|+|||+|.+|+-.+..|.+.|.+++++++.+.+-.-+                              +         
T Consensus         1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f   80 (531)
T PF00743_consen    1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDF   80 (531)
T ss_dssp             --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCC
Confidence            3799999999999999999999999999999884322110                              0         


Q ss_pred             --CHHHHHHHHHHHHHcCc--EEEcCCeEEEEEeCCCC---cEEEEEeC-CCc--EEEcCEEEEeecCc--cCChhhhhc
Q 011351          248 --TPSLAQRYEQLYQQNGV--KFVKGASIKNLEAGSDG---RVAAVKLE-DGS--TIDADTIVIGIGAK--PTVSPFERV  315 (488)
Q Consensus       248 --~~~~~~~~~~~l~~~GV--~v~~~~~v~~i~~~~~~---~v~~v~l~-~g~--~i~~D~vi~a~G~~--p~~~~~~~~  315 (488)
                        ..++.++++...+..++  .+.++++|++++..++.   .--.|++. +|+  +..+|.||+|+|..  |+.+.-.--
T Consensus        81 ~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~~  160 (531)
T PF00743_consen   81 PSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSFP  160 (531)
T ss_dssp             EBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-----C
T ss_pred             CCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhhh
Confidence              14577888888887776  58899999999875432   11245554 343  35689999999974  433210012


Q ss_pred             CCcccCCCEEeCCCCCC----CCCCEEEEcee
Q 011351          316 GLNSSVGGIQVDGQFRT----RMPGIFAIGDV  343 (488)
Q Consensus       316 gl~~~~g~i~vd~~~~t----~~~~Ifa~GD~  343 (488)
                      |++.-.|.+.=-.+++.    ..++|-++|-.
T Consensus       161 G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g  192 (531)
T PF00743_consen  161 GLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGG  192 (531)
T ss_dssp             TGGGHCSEEEEGGG--TGGGGTTSEEEEESSS
T ss_pred             hhhcCCeeEEccccCcChhhcCCCEEEEEeCC
Confidence            33322344433334443    24567777743

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.82  E-value=2.3e-05  Score=79.99  Aligned_cols=40  Identities=20%  Similarity=0.399  Sum_probs=36.3

Q ss_pred             CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011351           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (488)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~   90 (488)
                      ..++++|+|||||+|||+||++|.+.|+   +|+|+|..+...
T Consensus        12 ~~~~~~VIVIGAGiaGLsAArqL~~~G~---~V~VLEARdRvG   51 (501)
T KOG0029|consen   12 AGKKKKVIVIGAGLAGLSAARQLQDFGF---DVLVLEARDRVG   51 (501)
T ss_pred             ccCCCcEEEECCcHHHHHHHHHHHHcCC---ceEEEeccCCcC
Confidence            5667899999999999999999999998   799999998654

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=97.81  E-value=7.1e-05  Score=76.67  Aligned_cols=92  Identities=17%  Similarity=0.324  Sum_probs=69.6

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc-------c-cccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------Q-RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  277 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l-------~-~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~  277 (488)
                      .+++++|||+|+.|+.+|..|++.|.+|+++++.+.+.       + ..++.++.....+.+++.|++++.++.+..-  
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~--  217 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRD--  217 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCc--
Confidence            46889999999999999999999999999999887542       1 1135566666677889999999999866221  


Q ss_pred             CCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351          278 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  308 (488)
Q Consensus       278 ~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~  308 (488)
                              +.+++ ....+|.||+|+|..+.
T Consensus       218 --------~~~~~-~~~~~D~vilAtGa~~~  239 (467)
T TIGR01318       218 --------ISLDD-LLEDYDAVFLGVGTYRS  239 (467)
T ss_pred             --------cCHHH-HHhcCCEEEEEeCCCCC
Confidence                    11111 12479999999999875

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.81  E-value=0.00034  Score=66.89  Aligned_cols=98  Identities=22%  Similarity=0.370  Sum_probs=74.1

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCc-EEEEecC---------------CcCcccccCHHHHHHHHHHHHHcCcEEEcCCe
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPE---------------NHLLQRLFTPSLAQRYEQLYQQNGVKFVKGAS  271 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~-v~lv~~~---------------~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~  271 (488)
                      -.++|||+|+.|+-.|-++.+.+.+ +.+++..               +.+-.....+++.+.+.+..+..|+++.. ..
T Consensus         4 ~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~-~~   82 (305)
T COG0492           4 YDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE-DE   82 (305)
T ss_pred             eeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE-EE
Confidence            3689999999999999999999988 4444442               11111134567788888888888999988 66


Q ss_pred             EEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCC
Q 011351          272 IKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  309 (488)
Q Consensus       272 v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~  309 (488)
                      +.+++..++  ...|.+++|+ +.++.||+|||..+..
T Consensus        83 v~~v~~~~~--~F~v~t~~~~-~~ak~vIiAtG~~~~~  117 (305)
T COG0492          83 VEKVELEGG--PFKVKTDKGT-YEAKAVIIATGAGARK  117 (305)
T ss_pred             EEEEeecCc--eEEEEECCCe-EEEeEEEECcCCcccC
Confidence            777775422  4578888887 9999999999998753

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=97.80  E-value=0.00027  Score=71.34  Aligned_cols=98  Identities=18%  Similarity=0.323  Sum_probs=73.1

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc----------Cccc--ccC----------------------------
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH----------LLQR--LFT----------------------------  248 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~----------~l~~--~~~----------------------------  248 (488)
                      .|+|||+|+.|+-+|..|.+.|.+|+++++.+.          ..++  .+.                            
T Consensus         4 dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~   83 (405)
T PRK05714          4 DLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSEMQ   83 (405)
T ss_pred             cEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccceeEE
Confidence            599999999999999999999999999987641          0000  000                            


Q ss_pred             ----------------------------HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEE
Q 011351          249 ----------------------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV  300 (488)
Q Consensus       249 ----------------------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi  300 (488)
                                                  ..+.+.+.+.+++.|++++.++++++++..+++ + .|.+++|+++.+|+||
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v-~v~~~~g~~~~a~~vV  161 (405)
T PRK05714         84 VWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDD-W-LLTLADGRQLRAPLVV  161 (405)
T ss_pred             EEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCe-E-EEEECCCCEEEeCEEE
Confidence                                        012233445556679999999999999865443 3 5778899899999999


Q ss_pred             EeecCccC
Q 011351          301 IGIGAKPT  308 (488)
Q Consensus       301 ~a~G~~p~  308 (488)
                      .|.|....
T Consensus       162 gAdG~~S~  169 (405)
T PRK05714        162 AADGANSA  169 (405)
T ss_pred             EecCCCch
Confidence            99998764

>PLN02852 ferredoxin-NADP+ reductase

Probab=97.80  E-value=7.3e-05  Score=76.14  Aligned_cols=92  Identities=18%  Similarity=0.210  Sum_probs=67.0

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCcCcccc---------cCHHHHHHHHHHHHHcCcEEEcCCeEEE
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVG--WKLDTTIIFPENHLLQRL---------FTPSLAQRYEQLYQQNGVKFVKGASIKN  274 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~--~g~~v~lv~~~~~~l~~~---------~~~~~~~~~~~~l~~~GV~v~~~~~v~~  274 (488)
                      .+++|+|||+|+.|+.+|..|++  .|.+|+++++.+.+....         ....+...+.+.+++.+|+++.+..+-.
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~vg~  104 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLGR  104 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEECc
Confidence            46789999999999999999986  799999999988654211         1123445566777888999988755411


Q ss_pred             EEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351          275 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  308 (488)
Q Consensus       275 i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~  308 (488)
                                .+.+++-+ ..+|.||+|+|..+.
T Consensus       105 ----------dvtl~~L~-~~yDaVIlAtGa~~~  127 (491)
T PLN02852        105 ----------DVSLSELR-DLYHVVVLAYGAESD  127 (491)
T ss_pred             ----------cccHHHHh-hhCCEEEEecCCCCC
Confidence                      23344333 469999999999864

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=97.80  E-value=0.00025  Score=68.09  Aligned_cols=60  Identities=18%  Similarity=0.313  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCC---------------CcEEEcCEEEEeecCccCC
Q 011351          250 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---------------GSTIDADTIVIGIGAKPTV  309 (488)
Q Consensus       250 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~---------------g~~i~~D~vi~a~G~~p~~  309 (488)
                      .+..++-+..++.||+++.+....++.-++++.|.+|.++|               |-++.+..-|+|-|.+...
T Consensus       184 ~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~L  258 (621)
T KOG2415|consen  184 QLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSL  258 (621)
T ss_pred             HHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEeccccchh
Confidence            34556666778899999999988888888888888887754               2367888999999987653

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.79  E-value=0.00012  Score=75.60  Aligned_cols=82  Identities=20%  Similarity=0.251  Sum_probs=64.9

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEE
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  285 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~  285 (488)
                      .+++++|+|+|.+|+++|..|.++|.+|+++++.+.        .....+.+.+++.||+++++..+.            
T Consensus        15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~--------~~~~~~~~~l~~~gv~~~~~~~~~------------   74 (480)
T PRK01438         15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD--------ERHRALAAILEALGATVRLGPGPT------------   74 (480)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch--------hhhHHHHHHHHHcCCEEEECCCcc------------
Confidence            478999999999999999999999999999986642        223345566888899998875432            


Q ss_pred             EEeCCCcEEEcCEEEEeecCccCChhhh
Q 011351          286 VKLEDGSTIDADTIVIGIGAKPTVSPFE  313 (488)
Q Consensus       286 v~l~~g~~i~~D~vi~a~G~~p~~~~~~  313 (488)
                            ....+|.||+++|..|+.+++.
T Consensus        75 ------~~~~~D~Vv~s~Gi~~~~~~~~   96 (480)
T PRK01438         75 ------LPEDTDLVVTSPGWRPDAPLLA   96 (480)
T ss_pred             ------ccCCCCEEEECCCcCCCCHHHH
Confidence                  1245899999999999988643

>PRK06184 hypothetical protein; Provisional

Probab=97.79  E-value=0.00032  Score=72.83  Aligned_cols=98  Identities=17%  Similarity=0.258  Sum_probs=73.0

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc------------------------------------------
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------------  245 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~------------------------------------------  245 (488)
                      ..|+|||+|+.|+-+|..|++.|.+|+++++.+.+...                                          
T Consensus         4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~   83 (502)
T PRK06184          4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGSV   83 (502)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCceE
Confidence            46999999999999999999999999999976221100                                          


Q ss_pred             ---------------------ccC-HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe---CCCcEEEcCEEE
Q 011351          246 ---------------------LFT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGSTIDADTIV  300 (488)
Q Consensus       246 ---------------------~~~-~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l---~~g~~i~~D~vi  300 (488)
                                           .++ ..+.+.+.+.+++.|+++++++++++++.++++ + .+.+   .+++++.+|+||
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~-v-~v~~~~~~~~~~i~a~~vV  161 (502)
T PRK06184         84 AESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADG-V-TARVAGPAGEETVRARYLV  161 (502)
T ss_pred             EEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCc-E-EEEEEeCCCeEEEEeCEEE
Confidence                                 000 112345566677789999999999999865444 3 3444   556789999999


Q ss_pred             EeecCcc
Q 011351          301 IGIGAKP  307 (488)
Q Consensus       301 ~a~G~~p  307 (488)
                      .|.|...
T Consensus       162 gADG~~S  168 (502)
T PRK06184        162 GADGGRS  168 (502)
T ss_pred             ECCCCch
Confidence            9999875

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=97.79  E-value=3e-05  Score=78.96  Aligned_cols=35  Identities=29%  Similarity=0.428  Sum_probs=28.6

Q ss_pred             eEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      ||||||||+||..+|..|++.+.+..+|+|||++.
T Consensus         1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~   35 (454)
T PF04820_consen    1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPD   35 (454)
T ss_dssp             EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SS
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCC
Confidence            79999999999999999999985336999999987

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PLN02546 glutathione reductase

Probab=97.77  E-value=7.9e-05  Score=77.62  Aligned_cols=99  Identities=21%  Similarity=0.268  Sum_probs=69.7

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      ..++|+|||||+.|+..|..|++.+.   +|+|+++.+...   +.+        +.   .+           .....+.
T Consensus       251 ~~k~V~VIGgG~iGvE~A~~L~~~g~---~Vtlv~~~~~il---~~~--------d~---~~-----------~~~l~~~  302 (558)
T PLN02546        251 KPEKIAIVGGGYIALEFAGIFNGLKS---DVHVFIRQKKVL---RGF--------DE---EV-----------RDFVAEQ  302 (558)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhcCC---eEEEEEeccccc---ccc--------CH---HH-----------HHHHHHH
Confidence            35799999999999999999998876   899999765420   000        00   00           0123466


Q ss_pred             HHHCCCeEEeCCcEEEEeCC-Cc--EEEeCCCcEEEeccEEeccCCCCCc
Q 011351          130 YKEKGIEMIYQDPVTSIDIE-KQ--TLITNSGKLLKYGSLIVATGCTASR  176 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~-~~--~v~~~~g~~i~yd~lVlAtG~~~~~  176 (488)
                      +++.||+++.++.+.++... +.  .+.+.+++...+|.+++|+|..|..
T Consensus       303 L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt  352 (558)
T PLN02546        303 MSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNT  352 (558)
T ss_pred             HHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCC
Confidence            78899999999999888642 22  3344455545589999999988763

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=97.77  E-value=7.3e-05  Score=75.36  Aligned_cols=122  Identities=25%  Similarity=0.279  Sum_probs=83.4

Q ss_pred             CCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEE
Q 011351          157 SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTII  236 (488)
Q Consensus       157 ~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv  236 (488)
                      .+..+.++.|..+.|........+++. .++                ...+++|+|||+|+.|+..|..|.+.|+.|+++
T Consensus        90 ~~~~v~i~~le~~i~d~~~~~g~i~~~-~~~----------------~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~  152 (457)
T COG0493          90 EELPVNIGALERAIGDKADREGWIPGE-LPG----------------SRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVF  152 (457)
T ss_pred             CCCchhhhhHHHHHhhHHHHhCCCCCC-CCC----------------CCCCCEEEEECCCchHhhhHHHHHhCCCeEEEe
Confidence            344567777777777554322222211 111                124689999999999999999999999999999


Q ss_pred             ecCCcCccc--------ccCHHHHHHHHHHHHHcCcEEEcCCeEE-EEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCcc
Q 011351          237 FPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIK-NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  307 (488)
Q Consensus       237 ~~~~~~l~~--------~~~~~~~~~~~~~l~~~GV~v~~~~~v~-~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p  307 (488)
                      ++.+..-..        .++.++.+...+.|++.|++|+.++.+- .+           .++. -.-++|.|++++|..-
T Consensus       153 e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~~i-----------t~~~-L~~e~Dav~l~~G~~~  220 (457)
T COG0493         153 ERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGRDI-----------TLEE-LLKEYDAVFLATGAGK  220 (457)
T ss_pred             CCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECCcC-----------CHHH-HHHhhCEEEEeccccC
Confidence            887654321        2455788888899999999999987653 11           1111 1134599999999753

>PRK09126 hypothetical protein; Provisional

Probab=97.76  E-value=0.00035  Score=70.14  Aligned_cols=100  Identities=22%  Similarity=0.341  Sum_probs=72.1

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc-------cc-----------------------------------
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------QR-----------------------------------  245 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l-------~~-----------------------------------  245 (488)
                      -.|+|||+|+.|+-+|..|++.|.+|+++++.+.+-       .+                                   
T Consensus         4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~   83 (392)
T PRK09126          4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKVL   83 (392)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEEE
Confidence            359999999999999999999999999999764310       00                                   


Q ss_pred             --------ccCH---------------HHHHHHHHHH-HHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEE
Q 011351          246 --------LFTP---------------SLAQRYEQLY-QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI  301 (488)
Q Consensus       246 --------~~~~---------------~~~~~~~~~l-~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~  301 (488)
                              .++.               .+.+.+.+.+ +..|++++.++++++++..+ +.+ .|.+++|+++.+|+||.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~-~~~-~v~~~~g~~~~a~~vI~  161 (392)
T PRK09126         84 NGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDD-DGA-QVTLANGRRLTARLLVA  161 (392)
T ss_pred             cCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcC-CeE-EEEEcCCCEEEeCEEEE
Confidence                    0000               0111222222 34689999999999998643 333 57788999999999999


Q ss_pred             eecCccCC
Q 011351          302 GIGAKPTV  309 (488)
Q Consensus       302 a~G~~p~~  309 (488)
                      |.|..+..
T Consensus       162 AdG~~S~v  169 (392)
T PRK09126        162 ADSRFSAT  169 (392)
T ss_pred             eCCCCchh
Confidence            99987653

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.75  E-value=7.3e-05  Score=79.01  Aligned_cols=97  Identities=20%  Similarity=0.156  Sum_probs=67.1

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH-
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW-  129 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  129 (488)
                      .++|+|||||+.|+..|..|++.|.   +|+||+..+...   +.     +   +...              .....+. 
T Consensus       312 pk~VvIVGgG~iGvE~A~~l~~~G~---eVTLIe~~~~ll---~~-----~---d~ei--------------s~~l~~~l  363 (659)
T PTZ00153        312 QNYMGIVGMGIIGLEFMDIYTALGS---EVVSFEYSPQLL---PL-----L---DADV--------------AKYFERVF  363 (659)
T ss_pred             CCceEEECCCHHHHHHHHHHHhCCC---eEEEEeccCccc---cc-----C---CHHH--------------HHHHHHHH
Confidence            4689999999999999999999886   899999876521   00     0   0000              0112222 


Q ss_pred             HHHCCCeEEeCCcEEEEeCCC--c--EEEeC-------CC--------cEEEeccEEeccCCCCC
Q 011351          130 YKEKGIEMIYQDPVTSIDIEK--Q--TLITN-------SG--------KLLKYGSLIVATGCTAS  175 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~--~--~v~~~-------~g--------~~i~yd~lVlAtG~~~~  175 (488)
                      .++.+|+++.++.|.+++..+  .  .+.+.       ++        +++.+|.+++|||..|.
T Consensus       364 l~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pn  428 (659)
T PTZ00153        364 LKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPN  428 (659)
T ss_pred             hhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccC
Confidence            356789999999999997653  2  23222       11        26999999999998876

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=97.75  E-value=0.00038  Score=69.61  Aligned_cols=97  Identities=22%  Similarity=0.349  Sum_probs=72.0

Q ss_pred             eEEEECCCHHHHHHHHHHHhCC-CcEEEEecCCcCccc--------ccC-------------------------------
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHLLQR--------LFT-------------------------------  248 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g-~~v~lv~~~~~~l~~--------~~~-------------------------------  248 (488)
                      .|+|||+|+.|+-+|..|++.| .+|+++++.+.+-..        .+.                               
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~   80 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ   80 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence            3799999999999999999999 999999876422110        000                               


Q ss_pred             ------------------------HHHHHHHHHHHHH-cCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEee
Q 011351          249 ------------------------PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGI  303 (488)
Q Consensus       249 ------------------------~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~  303 (488)
                                              ..+.+.+.+.+.+ .|++++.++++++++.++++ + .+.+++|+++.+|.||.|.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~-~-~v~~~~g~~~~ad~vV~Ad  158 (382)
T TIGR01984        81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDY-V-RVTLDNGQQLRAKLLIAAD  158 (382)
T ss_pred             CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe-E-EEEECCCCEEEeeEEEEec
Confidence                                    1123334444555 49999999999999865433 3 5777888889999999999


Q ss_pred             cCcc
Q 011351          304 GAKP  307 (488)
Q Consensus       304 G~~p  307 (488)
                      |...
T Consensus       159 G~~S  162 (382)
T TIGR01984       159 GANS  162 (382)
T ss_pred             CCCh
Confidence            9764

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=97.75  E-value=9.6e-05  Score=76.08  Aligned_cols=90  Identities=24%  Similarity=0.295  Sum_probs=68.1

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc-------cc-ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------QR-LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  277 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l-------~~-~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~  277 (488)
                      .+++++|||+|+.|+.+|..|++.|.+|+++++.+++.       +. .+++++.....+.+++.||++++++.+..-  
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~--  219 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGVD--  219 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCCc--
Confidence            45799999999999999999999999999999887642       11 134566666667788999999999876311  


Q ss_pred             CCCCcEEEEEeCCCcEEEcCEEEEeecCc
Q 011351          278 GSDGRVAAVKLEDGSTIDADTIVIGIGAK  306 (488)
Q Consensus       278 ~~~~~v~~v~l~~g~~i~~D~vi~a~G~~  306 (488)
                              +. .++....+|.|++|+|..
T Consensus       220 --------~~-~~~~~~~~d~VilAtGa~  239 (485)
T TIGR01317       220 --------IS-ADELKEQFDAVVLAGGAT  239 (485)
T ss_pred             --------cC-HHHHHhhCCEEEEccCCC
Confidence                    10 011235799999999998

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PLN02697 lycopene epsilon cyclase

Probab=97.74  E-value=0.00037  Score=71.93  Aligned_cols=98  Identities=22%  Similarity=0.351  Sum_probs=70.9

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccc-----------------------------------------
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-----------------------------------------  246 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~-----------------------------------------  246 (488)
                      -.|+|||+|+.|+-+|..+++.|.+|.++++...+....                                         
T Consensus       109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Yg~  188 (529)
T PLN02697        109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAYGR  188 (529)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCcccE
Confidence            359999999999999999999999999998642211000                                         


Q ss_pred             c-CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCcc
Q 011351          247 F-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  307 (488)
Q Consensus       247 ~-~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p  307 (488)
                      + ...+.+.+.+.+.+.|+++ .+++|+++...++ .+..+.+.+|.++.+|.||.|+|..+
T Consensus       189 V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~-~~~vv~~~dG~~i~A~lVI~AdG~~S  248 (529)
T PLN02697        189 VSRTLLHEELLRRCVESGVSY-LSSKVDRITEASD-GLRLVACEDGRVIPCRLATVASGAAS  248 (529)
T ss_pred             EcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCC-cEEEEEEcCCcEEECCEEEECCCcCh
Confidence            0 0122344555567779998 5678999875433 33335667888999999999999876

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=97.74  E-value=0.0003  Score=72.87  Aligned_cols=95  Identities=23%  Similarity=0.370  Sum_probs=68.6

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCC-cCc--c-----------------ccc---------------------
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN-HLL--Q-----------------RLF---------------------  247 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~-~~l--~-----------------~~~---------------------  247 (488)
                      .|+|||||+.|+++|..+++.|.+|.++++.. .+-  +                 ..+                     
T Consensus         6 DVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~ln~s   85 (618)
T PRK05192          6 DVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRMLNTS   85 (618)
T ss_pred             eEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeecccC
Confidence            59999999999999999999999999998762 110  0                 000                     


Q ss_pred             ------------CH-HHHHHHHHHHHHc-CcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecC
Q 011351          248 ------------TP-SLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  305 (488)
Q Consensus       248 ------------~~-~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~  305 (488)
                                  +. .+...+.+.+++. |++++ ...++++..+ ++++.+|.+.+|..+.|+.||+|+|.
T Consensus        86 kGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e-~grV~GV~t~dG~~I~Ak~VIlATGT  155 (618)
T PRK05192         86 KGPAVRALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIVE-NGRVVGVVTQDGLEFRAKAVVLTTGT  155 (618)
T ss_pred             CCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEec-CCEEEEEEECCCCEEECCEEEEeeCc
Confidence                        00 0123333444444 78886 4567777643 56788899999999999999999994

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=97.72  E-value=0.00046  Score=69.05  Aligned_cols=98  Identities=27%  Similarity=0.345  Sum_probs=72.9

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc-------c--ccC-------------------------------
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------R--LFT-------------------------------  248 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~-------~--~~~-------------------------------  248 (488)
                      .|+|||+|+.|+-+|..|++.|.+|+++++.+.+-.       +  .+.                               
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~   80 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD   80 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence            389999999999999999999999999998753200       0  000                               


Q ss_pred             -------------------------HHHHHHHHHHHHHcC-cEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEe
Q 011351          249 -------------------------PSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG  302 (488)
Q Consensus       249 -------------------------~~~~~~~~~~l~~~G-V~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a  302 (488)
                                               ..+.+.+.+.+.+.| ++++.++++++++..+ +.+ .+.+++|+++.+|+||.|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~-~~~-~v~~~~g~~~~~~~vi~a  158 (385)
T TIGR01988        81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHS-DHV-ELTLDDGQQLRARLLVGA  158 (385)
T ss_pred             CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecC-Cee-EEEECCCCEEEeeEEEEe
Confidence                                     112233445556666 9999999999998643 333 577889989999999999


Q ss_pred             ecCccC
Q 011351          303 IGAKPT  308 (488)
Q Consensus       303 ~G~~p~  308 (488)
                      .|....
T Consensus       159 dG~~S~  164 (385)
T TIGR01988       159 DGANSK  164 (385)
T ss_pred             CCCCCH
Confidence            998653

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PTZ00188 adrenodoxin reductase; Provisional

Probab=97.71  E-value=0.00027  Score=71.14  Aligned_cols=129  Identities=13%  Similarity=0.159  Sum_probs=75.8

Q ss_pred             cCCeEEEECCCHHHHHHHHHH-HhCCCcEEEEecCCcCcccc---cC------HHHHHHHHHHHHHcCcEEEcCCeEEEE
Q 011351          206 KAKKVVVVGGGYIGMEVAAAA-VGWKLDTTIIFPENHLLQRL---FT------PSLAQRYEQLYQQNGVKFVKGASIKNL  275 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l-~~~g~~v~lv~~~~~~l~~~---~~------~~~~~~~~~~l~~~GV~v~~~~~v~~i  275 (488)
                      .+++|+|||+|+.|+.+|..| ++.|.+|+++++.+.+....   ..      ..+...+.+.+...+++++.+..+-. 
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~VG~-  116 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVGV-  116 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEecC-
Confidence            468999999999999999976 46799999999998764310   11      23455555556667888875433211 


Q ss_pred             EeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeCCCCCCCCCCEEEEceecccCC
Q 011351          276 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPL  348 (488)
Q Consensus       276 ~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~  348 (488)
                               .+..++= .-.+|.||+|+|..+....+  .+- +-+..+.-.+.+.+-.+++|.+.|...+.+
T Consensus       117 ---------Dvt~eeL-~~~YDAVIlAtGA~~l~ipi--~~~-~~~~~~~GGe~~~~~l~Gvf~A~dfV~WYN  176 (506)
T PTZ00188        117 ---------DLKMEEL-RNHYNCVIFCCGASEVSIPI--GQQ-DEDKAVSGGETNPRKQNGIFHARDLIYFYN  176 (506)
T ss_pred             ---------ccCHHHH-HhcCCEEEEEcCCCCCCCCc--ccc-cceeeeccccccccccCcEEehheEEEeec
Confidence                     1111111 23689999999988542111  000 001111111111122568888888765544

>PRK08013 oxidoreductase; Provisional

Probab=97.70  E-value=0.00046  Score=69.50  Aligned_cols=99  Identities=25%  Similarity=0.326  Sum_probs=72.3

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc--------c--ccC-----------------------------
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------R--LFT-----------------------------  248 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~--------~--~~~-----------------------------  248 (488)
                      ..|+|||+|+.|+-+|..|++.|.+|+++++.+.+-.        +  .+.                             
T Consensus         4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~~   83 (400)
T PRK08013          4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGMEV   83 (400)
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEEE
Confidence            4699999999999999999999999999997643110        0  000                             


Q ss_pred             ---------------------------HHHHHHHHHHHHHc-CcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEE
Q 011351          249 ---------------------------PSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV  300 (488)
Q Consensus       249 ---------------------------~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi  300 (488)
                                                 ..+.+.+.+.+.+. ||++++++++++++.++++  +.+.+.+|+++.+|+||
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~--v~v~~~~g~~i~a~lvV  161 (400)
T PRK08013         84 WDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENE--AFLTLKDGSMLTARLVV  161 (400)
T ss_pred             EeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe--EEEEEcCCCEEEeeEEE
Confidence                                       01122233334443 7999999999999865433  35778899999999999


Q ss_pred             EeecCccC
Q 011351          301 IGIGAKPT  308 (488)
Q Consensus       301 ~a~G~~p~  308 (488)
                      -|-|....
T Consensus       162 gADG~~S~  169 (400)
T PRK08013        162 GADGANSW  169 (400)
T ss_pred             EeCCCCcH
Confidence            99998764

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=97.70  E-value=0.00051  Score=68.84  Aligned_cols=105  Identities=24%  Similarity=0.321  Sum_probs=76.0

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc--------------------cc--------------------
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------------------LF--------------------  247 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~--------------------~~--------------------  247 (488)
                      ..|+|||+|+.|+-+|..|.+.|.+|+++++.+.+...                    .+                    
T Consensus         6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~   85 (388)
T PRK07608          6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRVF   85 (388)
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEEE
Confidence            36999999999999999999999999999977543110                    00                    


Q ss_pred             ------------------------CHHHHHHHHHHHHHcC-cEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEe
Q 011351          248 ------------------------TPSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG  302 (488)
Q Consensus       248 ------------------------~~~~~~~~~~~l~~~G-V~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a  302 (488)
                                              ...+.+.+.+.+++.| ++++ +.++++++..++ .+ .+.+.+|+++.+|.||.|
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~-~~-~v~~~~g~~~~a~~vI~a  162 (388)
T PRK07608         86 GDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPD-AA-TLTLADGQVLRADLVVGA  162 (388)
T ss_pred             ECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCC-eE-EEEECCCCEEEeeEEEEe
Confidence                                    0123334555566776 9998 889999875433 33 577888888999999999


Q ss_pred             ecCccCChhhhhcCC
Q 011351          303 IGAKPTVSPFERVGL  317 (488)
Q Consensus       303 ~G~~p~~~~~~~~gl  317 (488)
                      .|....  +.+.+++
T Consensus       163 dG~~S~--vr~~~~~  175 (388)
T PRK07608        163 DGAHSW--VRSQAGI  175 (388)
T ss_pred             CCCCch--HHHhcCC
Confidence            998753  3344444

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.70  E-value=0.00043  Score=70.05  Aligned_cols=100  Identities=24%  Similarity=0.371  Sum_probs=69.7

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc----cc--cc----------------------------------
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL----QR--LF----------------------------------  247 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l----~~--~~----------------------------------  247 (488)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.+.+-    ++  .+                                  
T Consensus        19 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~   98 (415)
T PRK07364         19 YDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDADY   98 (415)
T ss_pred             cCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeCCC
Confidence            469999999999999999999999999998764221    00  00                                  


Q ss_pred             ---------------------CHHHHHHHHHHHHHc-CcEEEcCCeEEEEEeCCCCcEEEEEeCC-C--cEEEcCEEEEe
Q 011351          248 ---------------------TPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLED-G--STIDADTIVIG  302 (488)
Q Consensus       248 ---------------------~~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~~~v~~v~l~~-g--~~i~~D~vi~a  302 (488)
                                           ...+.+.+.+.+.+. |+++++++++++++.++++ + .+.+.+ +  .++.+|+||.|
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~-~-~v~~~~~~~~~~i~adlvIgA  176 (415)
T PRK07364         99 PGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDA-A-TVTLEIEGKQQTLQSKLVVAA  176 (415)
T ss_pred             CceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe-e-EEEEccCCcceEEeeeEEEEe
Confidence                                 011222333334443 7999999999999865433 3 355553 2  36999999999


Q ss_pred             ecCccCC
Q 011351          303 IGAKPTV  309 (488)
Q Consensus       303 ~G~~p~~  309 (488)
                      .|.....
T Consensus       177 DG~~S~v  183 (415)
T PRK07364        177 DGARSPI  183 (415)
T ss_pred             CCCCchh
Confidence            9987643

>PRK07208 hypothetical protein; Provisional

Probab=97.69  E-value=4.8e-05  Score=78.56  Aligned_cols=57  Identities=28%  Similarity=0.399  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe--CCCc--EEEcCEEEEeecC
Q 011351          249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL--EDGS--TIDADTIVIGIGA  305 (488)
Q Consensus       249 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l--~~g~--~i~~D~vi~a~G~  305 (488)
                      ..+.+.+.+.+++.|++++++++|++|..++++.+..+..  .+|+  ++.+|.||+++..
T Consensus       218 ~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~  278 (479)
T PRK07208        218 GQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPL  278 (479)
T ss_pred             chHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCH
Confidence            3567788888888999999999999998765554444443  2453  5899999999775

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=97.69  E-value=0.00039  Score=68.46  Aligned_cols=100  Identities=29%  Similarity=0.388  Sum_probs=70.6

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc-------------------------------------------
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-------------------------------------------  245 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~-------------------------------------------  245 (488)
                      .|+|||+|+.|+-+|..|++.|.+|+++++.+.+...                                           
T Consensus         3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~~   82 (356)
T PF01494_consen    3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGISD   82 (356)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETTT
T ss_pred             eEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccCC
Confidence            5899999999999999999999999999987221110                                           


Q ss_pred             ------------c------------c-CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC-CCc--EEEcC
Q 011351          246 ------------L------------F-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DGS--TIDAD  297 (488)
Q Consensus       246 ------------~------------~-~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~-~g~--~i~~D  297 (488)
                                  .            + -..+.+.+.+.+++.|++++++++++.++.+.++....+... +|+  ++.+|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~ad  162 (356)
T PF01494_consen   83 SRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEAD  162 (356)
T ss_dssp             SEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEES
T ss_pred             ccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEe
Confidence                        0            0 124566777777888999999999999886654422223332 343  68999


Q ss_pred             EEEEeecCccC
Q 011351          298 TIVIGIGAKPT  308 (488)
Q Consensus       298 ~vi~a~G~~p~  308 (488)
                      +||-|-|....
T Consensus       163 lvVgADG~~S~  173 (356)
T PF01494_consen  163 LVVGADGAHSK  173 (356)
T ss_dssp             EEEE-SGTT-H
T ss_pred             eeecccCcccc
Confidence            99999999763

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=97.69  E-value=0.00013  Score=79.39  Aligned_cols=93  Identities=22%  Similarity=0.282  Sum_probs=68.9

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc-------c-ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------R-LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  277 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~-------~-~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~  277 (488)
                      .+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+-.       . .++.++.+...+.+++.||++++++.+..   
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~~---  506 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVGK---  506 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECC---
Confidence            357899999999999999999999999999998643211       0 12445556666778889999999875411   


Q ss_pred             CCCCcEEEEEeCCCcEEEcCEEEEeecC-ccC
Q 011351          278 GSDGRVAAVKLEDGSTIDADTIVIGIGA-KPT  308 (488)
Q Consensus       278 ~~~~~v~~v~l~~g~~i~~D~vi~a~G~-~p~  308 (488)
                             .+.+++.....+|.||+|+|. .|.
T Consensus       507 -------~v~~~~l~~~~ydavvlAtGa~~~~  531 (752)
T PRK12778        507 -------TITIEELEEEGFKGIFIASGAGLPN  531 (752)
T ss_pred             -------cCCHHHHhhcCCCEEEEeCCCCCCC
Confidence                   233444445679999999998 454

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=97.67  E-value=0.00023  Score=65.90  Aligned_cols=69  Identities=9%  Similarity=0.127  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCc---EEEEEeCCCcEEEcCEEEEeecCccCChhhhhcCCccc
Q 011351          251 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR---VAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS  320 (488)
Q Consensus       251 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~---v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~  320 (488)
                      +...+-+.++..|-+++++-+++.+..+.++.   ...|.-..++++++..+|-|+|...+ ...+.+|++.+
T Consensus       198 v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sd-r~aa~sgc~~d  269 (453)
T KOG2665|consen  198 VTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSD-RCAALSGCELD  269 (453)
T ss_pred             HHHHHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHh-HHHHHhCCCCC
Confidence            33344455888899999999999988654431   22333344688999999999999875 34455555543

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=97.67  E-value=0.00019  Score=78.77  Aligned_cols=90  Identities=20%  Similarity=0.209  Sum_probs=65.3

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc--------ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeC
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG  278 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~--------~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~  278 (488)
                      +++|+|||||+.|+.+|..|++.|.+|+++++.+.+-..        .++.+..+...+.+.+.||+++++...      
T Consensus       537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~~------  610 (1012)
T TIGR03315       537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGCSP------  610 (1012)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEEEeccc------
Confidence            478999999999999999999999999999987643221        123344445556678889999987421      


Q ss_pred             CCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351          279 SDGRVAAVKLEDGSTIDADTIVIGIGAKPT  308 (488)
Q Consensus       279 ~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~  308 (488)
                            .+.+.+.+...+|.||+|||..+.
T Consensus       611 ------d~~ve~l~~~gYDaVIIATGA~~~  634 (1012)
T TIGR03315       611 ------DLTVAELKNQGYKYVILAIGAWKH  634 (1012)
T ss_pred             ------ceEhhhhhcccccEEEECCCCCCC
Confidence                  012223334669999999999864

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK06753 hypothetical protein; Provisional

Probab=97.66  E-value=0.00044  Score=68.89  Aligned_cols=98  Identities=14%  Similarity=0.221  Sum_probs=69.9

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc----ccCHH----------------------------------
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----LFTPS----------------------------------  250 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~----~~~~~----------------------------------  250 (488)
                      +|+|||+|+.|+-+|..|++.|.+|+++++.+.+...    .+.+.                                  
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~~   81 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTLL   81 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCEE
Confidence            6899999999999999999999999999987432110    00000                                  


Q ss_pred             --------------HHHHHHHHHHH--cCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351          251 --------------LAQRYEQLYQQ--NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  308 (488)
Q Consensus       251 --------------~~~~~~~~l~~--~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~  308 (488)
                                    -...+.+.|.+  .+.++++++++++++.+ ++.+ .+.+++|+++.+|+||-|-|....
T Consensus        82 ~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~-~~~v-~v~~~~g~~~~~~~vigadG~~S~  153 (373)
T PRK06753         82 NKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENE-TDKV-TIHFADGESEAFDLCIGADGIHSK  153 (373)
T ss_pred             eecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEec-CCcE-EEEECCCCEEecCEEEECCCcchH
Confidence                          01112333322  24678999999999854 3443 577889999999999999997754

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.66  E-value=0.00076  Score=68.49  Aligned_cols=65  Identities=20%  Similarity=0.254  Sum_probs=48.7

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCc-----EEEcCEEEEeecCccCChhhhhc
Q 011351          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-----TIDADTIVIGIGAKPTVSPFERV  315 (488)
Q Consensus       248 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~-----~i~~D~vi~a~G~~p~~~~~~~~  315 (488)
                      +..+.-.......++|-++...++|+.+..+ ++ +.+|...|.+     ++.++.||.|+|.-.. ++++..
T Consensus       163 daRLv~~~a~~A~~~Ga~il~~~~v~~~~re-~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d-~i~~~~  232 (532)
T COG0578         163 DARLVAANARDAAEHGAEILTYTRVESLRRE-GG-VWGVEVEDRETGETYEIRARAVVNAAGPWVD-EILEMA  232 (532)
T ss_pred             hHHHHHHHHHHHHhcccchhhcceeeeeeec-CC-EEEEEEEecCCCcEEEEEcCEEEECCCccHH-HHHHhh
Confidence            3455556667778899999999999999865 34 7788876543     5899999999998765 444443

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=97.64  E-value=0.00069  Score=68.00  Aligned_cols=99  Identities=22%  Similarity=0.337  Sum_probs=72.5

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc---------------c-------------cc-------------
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL---------------Q-------------RL-------------  246 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l---------------~-------------~~-------------  246 (488)
                      -.|+|||+|+.|+-+|..|++.|.+|+++++.+...               +             ..             
T Consensus         6 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~   85 (391)
T PRK08020          6 TDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRLET   85 (391)
T ss_pred             ccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceEEE
Confidence            469999999999999999999999999998763100               0             00             


Q ss_pred             ---------c---------------CHHHHHHHHHHHHHc-CcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEE
Q 011351          247 ---------F---------------TPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI  301 (488)
Q Consensus       247 ---------~---------------~~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~  301 (488)
                               +               ...+.+.+.+.+++. |++++.++++++++..+++  ..+.+++|+++.+|+||.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~~vI~  163 (391)
T PRK08020         86 WEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDG--WELTLADGEEIQAKLVIG  163 (391)
T ss_pred             EeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe--EEEEECCCCEEEeCEEEE
Confidence                     0               011223344444555 9999999999999755333  357778888999999999


Q ss_pred             eecCccC
Q 011351          302 GIGAKPT  308 (488)
Q Consensus       302 a~G~~p~  308 (488)
                      |.|....
T Consensus       164 AdG~~S~  170 (391)
T PRK08020        164 ADGANSQ  170 (391)
T ss_pred             eCCCCch
Confidence            9999874

>PLN02661 Putative thiazole synthesis

Probab=97.64  E-value=0.0013  Score=63.47  Aligned_cols=99  Identities=19%  Similarity=0.273  Sum_probs=69.2

Q ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCcCcc----------cc----------------cC-----------H
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGW-KLDTTIIFPENHLLQ----------RL----------------FT-----------P  249 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~-g~~v~lv~~~~~~l~----------~~----------------~~-----------~  249 (488)
                      -.|+|||+|..|+-+|..|++. +.+|+++++...+-.          ..                ++           .
T Consensus        93 ~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~ha~  172 (357)
T PLN02661         93 TDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKHAA  172 (357)
T ss_pred             CCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEecchH
Confidence            4799999999999999999975 789999998743211          00                00           0


Q ss_pred             HHHHHHH-HHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC------C--C------cEEEcCEEEEeecCcc
Q 011351          250 SLAQRYE-QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE------D--G------STIDADTIVIGIGAKP  307 (488)
Q Consensus       250 ~~~~~~~-~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~------~--g------~~i~~D~vi~a~G~~p  307 (488)
                      .+...+. +.+++.||+++.++.+.++..+ ++++.++.+.      +  +      ..+.++.||+|||...
T Consensus       173 e~~stLi~ka~~~~gVkI~~~t~V~DLI~~-~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g  244 (357)
T PLN02661        173 LFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDG  244 (357)
T ss_pred             HHHHHHHHHHHhcCCCEEEeCeEeeeEEec-CCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCC
Confidence            1111222 3344578999999999998864 5677777631      1  1      2689999999999765

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=97.63  E-value=0.00072  Score=67.69  Aligned_cols=100  Identities=23%  Similarity=0.315  Sum_probs=71.2

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc--Cc---c---c--ccCH----------------------------
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH--LL---Q---R--LFTP----------------------------  249 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~--~l---~---~--~~~~----------------------------  249 (488)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.+.  +.   +   +  .+.+                            
T Consensus         4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~~   83 (384)
T PRK08849          4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLET   83 (384)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEEE
Confidence            3699999999999999999999999999996531  00   0   0  0000                            


Q ss_pred             ---------------------------HHHHHHHHHHHH-cCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEE
Q 011351          250 ---------------------------SLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI  301 (488)
Q Consensus       250 ---------------------------~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~  301 (488)
                                                 .+...+.+.+++ .|++++.++++++++.++++ + .+.+++|+++.+|+||.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~-~-~v~~~~g~~~~~~lvIg  161 (384)
T PRK08849         84 WEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEG-N-RVTLESGAEIEAKWVIG  161 (384)
T ss_pred             EeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCe-E-EEEECCCCEEEeeEEEE
Confidence                                       000111122223 37999999999999865443 3 57889999999999999


Q ss_pred             eecCccCC
Q 011351          302 GIGAKPTV  309 (488)
Q Consensus       302 a~G~~p~~  309 (488)
                      |.|.....
T Consensus       162 ADG~~S~v  169 (384)
T PRK08849        162 ADGANSQV  169 (384)
T ss_pred             ecCCCchh
Confidence            99998754

>TIGR00136 gidA glucose-inhibited division protein A

Probab=97.63  E-value=0.00065  Score=70.32  Aligned_cols=98  Identities=19%  Similarity=0.329  Sum_probs=70.6

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc------------------cc-------------------------
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL------------------QR-------------------------  245 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l------------------~~-------------------------  245 (488)
                      .|+|||+|+.|+++|..+++.|.+|.++++.....                  ..                         
T Consensus         2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~s   81 (617)
T TIGR00136         2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNSS   81 (617)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheecccC
Confidence            48999999999999999999999999998652110                  00                         


Q ss_pred             ----------ccCH-HHHHHHHHHHHHc-CcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCcc
Q 011351          246 ----------LFTP-SLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  307 (488)
Q Consensus       246 ----------~~~~-~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p  307 (488)
                                .+|+ .+...+.+.+++. |+.++.+ .++.+...+++.+.+|.+.+|..+.||.||+|+|.-.
T Consensus        82 kgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL  154 (617)
T TIGR00136        82 KGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL  154 (617)
T ss_pred             CCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence                      0000 1123444555555 7888765 5667654435678889999999999999999999874

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=97.63  E-value=0.00065  Score=68.09  Aligned_cols=97  Identities=22%  Similarity=0.302  Sum_probs=70.4

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc----------------------------c--------------
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------------------------L--------------  246 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~----------------------------~--------------  246 (488)
                      .|+|||+|+.|+-+|..|.+.|.+|+++++.+.+...                            .              
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG   80 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence            3799999999999999999999999999976422100                            0              


Q ss_pred             -c-CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCcc
Q 011351          247 -F-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  307 (488)
Q Consensus       247 -~-~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p  307 (488)
                       + ...+.+.+.+.+.+.|++++ ..++..++..+ +....+.+++|+++.+|.||.|+|..+
T Consensus        81 ~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~-~~~~~v~~~~g~~~~a~~VI~A~G~~s  141 (388)
T TIGR01790        81 SVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADG-VALSTVYCAGGQRIQARLVIDARGFGP  141 (388)
T ss_pred             EEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecC-CceeEEEeCCCCEEEeCEEEECCCCch
Confidence             0 01233455555677789886 45788887542 333457778888899999999999876

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=97.63  E-value=0.00078  Score=67.66  Aligned_cols=107  Identities=17%  Similarity=0.267  Sum_probs=78.6

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc------------------c------------------------
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------L------------------------  246 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~------------------~------------------------  246 (488)
                      .|+|||+|+.|.-+|..|++.|.+|.++++.+.+-.+                  .                        
T Consensus         5 DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~~~~   84 (396)
T COG0644           5 DVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVAIEV   84 (396)
T ss_pred             eEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceEEec
Confidence            5899999999999999999999999999986221110                  0                        


Q ss_pred             -------c-CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcCCc
Q 011351          247 -------F-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLN  318 (488)
Q Consensus       247 -------~-~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~  318 (488)
                             + ...+.+++.+..++.|.+++.+++++.+..++++.+.. ...++.++.++.||.|.|...  .+.+.+++.
T Consensus        85 ~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~a~~vI~AdG~~s--~l~~~lg~~  161 (396)
T COG0644          85 PVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVG-VRAGDDEVRAKVVIDADGVNS--ALARKLGLK  161 (396)
T ss_pred             CCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEE-EEcCCEEEEcCEEEECCCcch--HHHHHhCCC
Confidence                   0 11234556777788999999999999999765565543 344447899999999999865  344444443

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=97.62  E-value=5.4e-05  Score=75.35  Aligned_cols=35  Identities=20%  Similarity=0.381  Sum_probs=30.4

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      ..+||+|||||.||..||...++.|.   ++.|+.-+.
T Consensus         3 ~~~DVIVIGgGHAG~EAA~AaARmG~---ktlLlT~~~   37 (621)
T COG0445           3 KEYDVIVIGGGHAGVEAALAAARMGA---KTLLLTLNL   37 (621)
T ss_pred             CCCceEEECCCccchHHHHhhhccCC---eEEEEEcCC
Confidence            35899999999999999999999987   677777654

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=97.60  E-value=0.00073  Score=68.15  Aligned_cols=107  Identities=21%  Similarity=0.302  Sum_probs=74.1

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecC-CcCc------cc--ccC------------------------------
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE-NHLL------QR--LFT------------------------------  248 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~-~~~l------~~--~~~------------------------------  248 (488)
                      ..|+|||+|+.|+-+|..|.+.|.+|+++++. +...      .+  .+.                              
T Consensus         5 ~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~   84 (405)
T PRK08850          5 VDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEVW   84 (405)
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEEE
Confidence            46999999999999999999999999999974 1100      00  000                              


Q ss_pred             --------------------------HHHHHHHHHHHHH-cCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEE
Q 011351          249 --------------------------PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI  301 (488)
Q Consensus       249 --------------------------~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~  301 (488)
                                                ..+...+.+.+.+ .|++++.++++++++.++++  ..+.+++|+++.+|+||.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~lvIg  162 (405)
T PRK08850         85 EQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESE--AWLTLDNGQALTAKLVVG  162 (405)
T ss_pred             eCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCe--EEEEECCCCEEEeCEEEE
Confidence                                      0011223333333 47999999999999764333  367888999999999999


Q ss_pred             eecCccCChhhhhcCCc
Q 011351          302 GIGAKPTVSPFERVGLN  318 (488)
Q Consensus       302 a~G~~p~~~~~~~~gl~  318 (488)
                      |.|....  +-+.+++.
T Consensus       163 ADG~~S~--vR~~~~~~  177 (405)
T PRK08850        163 ADGANSW--LRRQMDIP  177 (405)
T ss_pred             eCCCCCh--hHHHcCCC
Confidence            9997653  33444443

>PLN02529 lysine-specific histone demethylase 1

Probab=97.60  E-value=7.5e-05  Score=79.49  Aligned_cols=39  Identities=23%  Similarity=0.387  Sum_probs=34.8

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~   90 (488)
                      ...++|+|||||+|||+||..|++.|+   +|+|+|+.+...
T Consensus       158 ~~~~~v~viGaG~aGl~aA~~l~~~g~---~v~v~E~~~~~G  196 (738)
T PLN02529        158 GTEGSVIIVGAGLAGLAAARQLLSFGF---KVVVLEGRNRPG  196 (738)
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHcCC---cEEEEecCccCc
Confidence            456899999999999999999999998   799999987643

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=97.60  E-value=5.2e-05  Score=76.83  Aligned_cols=106  Identities=25%  Similarity=0.326  Sum_probs=26.7

Q ss_pred             EEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc--------------------------------------------
Q 011351          210 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------------------------------------------  245 (488)
Q Consensus       210 vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~--------------------------------------------  245 (488)
                      |+|||||+.|+-.|..+++.|.+|.|+++.+.+-..                                            
T Consensus         2 VVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~~   81 (428)
T PF12831_consen    2 VVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYGW   81 (428)
T ss_dssp             EEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST--------------
T ss_pred             EEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhccccccccccc
Confidence            899999999999999999999999999988432110                                            


Q ss_pred             ----ccCHH-HHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCC---CcEEEcCEEEEeecCccCChhhhhcCC
Q 011351          246 ----LFTPS-LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---GSTIDADTIVIGIGAKPTVSPFERVGL  317 (488)
Q Consensus       246 ----~~~~~-~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~---g~~i~~D~vi~a~G~~p~~~~~~~~gl  317 (488)
                          .+++. ....+.+.+++.|+++++++.+.++..+ ++++.+|.+.+   ..++.++.+|-|||-   -+++..+|.
T Consensus        82 ~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~-~~~i~~V~~~~~~g~~~i~A~~~IDaTG~---g~l~~~aG~  157 (428)
T PF12831_consen   82 VSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRD-GGRITGVIVETKSGRKEIRAKVFIDATGD---GDLAALAGA  157 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccc---ccccccccc
Confidence                01111 1223556677889999999999999864 67788888865   457999999999994   245555555


Q ss_pred             cc
Q 011351          318 NS  319 (488)
Q Consensus       318 ~~  319 (488)
                      +.
T Consensus       158 ~~  159 (428)
T PF12831_consen  158 PY  159 (428)
T ss_dssp             --
T ss_pred             cc
Confidence            44

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.59  E-value=0.0002  Score=76.45  Aligned_cols=92  Identities=17%  Similarity=0.319  Sum_probs=69.7

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc--------ccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--------QRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  277 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l--------~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~  277 (488)
                      .+++|+|||+|+.|+..|..|++.|.+|+++++.+.+.        +..++..+.+...+.+++.||++++++.+..   
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~---  385 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGR---  385 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCC---
Confidence            46899999999999999999999999999999887542        1124566666666788999999999976521   


Q ss_pred             CCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351          278 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  308 (488)
Q Consensus       278 ~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~  308 (488)
                             .+.+.+ ....+|.|++|+|..+.
T Consensus       386 -------~~~~~~-l~~~~DaV~latGa~~~  408 (639)
T PRK12809        386 -------DITFSD-LTSEYDAVFIGVGTYGM  408 (639)
T ss_pred             -------cCCHHH-HHhcCCEEEEeCCCCCC
Confidence                   112222 12468999999998754

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=97.58  E-value=0.00081  Score=70.47  Aligned_cols=100  Identities=26%  Similarity=0.338  Sum_probs=71.2

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc--c---------------------------------------
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--R---------------------------------------  245 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~--~---------------------------------------  245 (488)
                      ..+|+|||+|+.|+-+|..|.+.|.+|+++++.+.+..  +                                       
T Consensus        10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~g~   89 (538)
T PRK06183         10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAKGR   89 (538)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCCCC
Confidence            35799999999999999999999999999997732110  0                                       


Q ss_pred             ---ccC-----------------HHHHHHHHHHHHH-cCcEEEcCCeEEEEEeCCCCcEEEEEeC--CC--cEEEcCEEE
Q 011351          246 ---LFT-----------------PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLE--DG--STIDADTIV  300 (488)
Q Consensus       246 ---~~~-----------------~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~~~v~~v~l~--~g--~~i~~D~vi  300 (488)
                         .++                 +.+.+.+.+.+.+ .|+++++++++++++.++++ + .+.++  +|  +++.+|+||
T Consensus        90 ~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~-v-~v~~~~~~G~~~~i~ad~vV  167 (538)
T PRK06183         90 CLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDG-V-TVTLTDADGQRETVRARYVV  167 (538)
T ss_pred             EEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCe-E-EEEEEcCCCCEEEEEEEEEE
Confidence               000                 1122334444444 38999999999999876544 3 34454  56  479999999


Q ss_pred             EeecCccC
Q 011351          301 IGIGAKPT  308 (488)
Q Consensus       301 ~a~G~~p~  308 (488)
                      -|.|....
T Consensus       168 gADG~~S~  175 (538)
T PRK06183        168 GCDGANSF  175 (538)
T ss_pred             ecCCCchh
Confidence            99998654

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=97.58  E-value=0.00023  Score=73.15  Aligned_cols=91  Identities=20%  Similarity=0.314  Sum_probs=67.5

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc--------ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  277 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~--------~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~  277 (488)
                      .+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...        .++.++.....+.+++.||++++++.+.. + 
T Consensus       142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~-~-  219 (471)
T PRK12810        142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGK-D-  219 (471)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECC-c-
Confidence            4579999999999999999999999999999988655211        13445555666778889999999976531 1 


Q ss_pred             CCCCcEEEEEeCCCcEEEcCEEEEeecCcc
Q 011351          278 GSDGRVAAVKLEDGSTIDADTIVIGIGAKP  307 (488)
Q Consensus       278 ~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p  307 (488)
                              +.. +.....+|.||+|+|..+
T Consensus       220 --------~~~-~~~~~~~d~vvlAtGa~~  240 (471)
T PRK12810        220 --------ITA-EELLAEYDAVFLGTGAYK  240 (471)
T ss_pred             --------CCH-HHHHhhCCEEEEecCCCC
Confidence                    000 111257999999999973

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=97.57  E-value=0.00092  Score=70.23  Aligned_cols=102  Identities=22%  Similarity=0.292  Sum_probs=71.4

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc----------------------------------c------
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------------------------------L------  246 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~----------------------------------~------  246 (488)
                      ...|+|||+|+.|+-+|..|.+.|.+|+++++.+.+...                                  .      
T Consensus        23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~  102 (547)
T PRK08132         23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRDEE  102 (547)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCCCe
Confidence            357999999999999999999999999999877321100                                  0      


Q ss_pred             -------------------c-CHHHHHHHHHHHHHc-CcEEEcCCeEEEEEeCCCCcEEEEEeCCCc-EEEcCEEEEeec
Q 011351          247 -------------------F-TPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIG  304 (488)
Q Consensus       247 -------------------~-~~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~-~i~~D~vi~a~G  304 (488)
                                         + ...+.+.+.+.+++. ++++++++++++++.++++....+...+|+ ++.+|+||.|.|
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG  182 (547)
T PRK08132        103 VYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDG  182 (547)
T ss_pred             EEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCC
Confidence                               0 001223344445554 799999999999986544422233334554 699999999999


Q ss_pred             CccC
Q 011351          305 AKPT  308 (488)
Q Consensus       305 ~~p~  308 (488)
                      ....
T Consensus       183 ~~S~  186 (547)
T PRK08132        183 ARSP  186 (547)
T ss_pred             CCcH
Confidence            8764

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.57  E-value=0.0018  Score=65.18  Aligned_cols=135  Identities=16%  Similarity=0.267  Sum_probs=87.0

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc----------------------------------------c
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------------------------R  245 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~----------------------------------------~  245 (488)
                      ..++++|||+|++|+-.|..|.+.|.++++++|.+.+-.                                        +
T Consensus         5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~   84 (448)
T KOG1399|consen    5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPR   84 (448)
T ss_pred             CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCcc
Confidence            367899999999999999999999999999998843211                                        0


Q ss_pred             cc-C-HHHHHHHHHHHHHcCc--EEEcCCeEEEEEeCCCCcEEEEEeCCC----cEEEcCEEEEeecCc--cCChhhhhc
Q 011351          246 LF-T-PSLAQRYEQLYQQNGV--KFVKGASIKNLEAGSDGRVAAVKLEDG----STIDADTIVIGIGAK--PTVSPFERV  315 (488)
Q Consensus       246 ~~-~-~~~~~~~~~~l~~~GV--~v~~~~~v~~i~~~~~~~v~~v~l~~g----~~i~~D~vi~a~G~~--p~~~~~~~~  315 (488)
                      .+ + .++.++++...+..++  .+.+++.+.+++...+|+- .|.+.++    ++.-+|.|++|+|.-  |+.......
T Consensus        85 ~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW-~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g~  163 (448)
T KOG1399|consen   85 YFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKW-RVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPGP  163 (448)
T ss_pred             cCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCce-eEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCCC
Confidence            10 1 1466777777777775  5788888888886542332 3444332    467899999999987  554433333


Q ss_pred             CCcccCCCEEeCCCCCC----CCCCEEEEc
Q 011351          316 GLNSSVGGIQVDGQFRT----RMPGIFAIG  341 (488)
Q Consensus       316 gl~~~~g~i~vd~~~~t----~~~~Ifa~G  341 (488)
                      +++.=.|.+.--..++.    ....|.++|
T Consensus       164 ~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG  193 (448)
T KOG1399|consen  164 GIESFKGKIIHSHDYKSPEKFRDKVVLVVG  193 (448)
T ss_pred             chhhcCCcceehhhccCcccccCceEEEEC
Confidence            32222333332222332    235677888

>PRK06475 salicylate hydroxylase; Provisional

Probab=97.56  E-value=0.0011  Score=66.83  Aligned_cols=99  Identities=16%  Similarity=0.236  Sum_probs=69.5

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc------------------------------------------
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------------  245 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~------------------------------------------  245 (488)
                      ++|+|||+|+.|+-+|..|++.|.+|+++++.+.+...                                          
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~   82 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR   82 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence            68999999999999999999999999999977321000                                          


Q ss_pred             -cc-------------------C-HHHHHHHHHHHHH-cCcEEEcCCeEEEEEeCCCCcEEEEEe---CCCcEEEcCEEE
Q 011351          246 -LF-------------------T-PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKL---EDGSTIDADTIV  300 (488)
Q Consensus       246 -~~-------------------~-~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~~~v~~v~l---~~g~~i~~D~vi  300 (488)
                       .+                   . ..+.+.+.+.+.+ .|+++++++++++++..+ +.+ .+++   .+++++.+|+||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~-~~v-~v~~~~~~~~~~~~adlvI  160 (400)
T PRK06475         83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTG-NSI-TATIIRTNSVETVSAAYLI  160 (400)
T ss_pred             eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCC-Cce-EEEEEeCCCCcEEecCEEE
Confidence             00                   0 1122334444444 479999999999998643 333 3443   344679999999


Q ss_pred             EeecCccC
Q 011351          301 IGIGAKPT  308 (488)
Q Consensus       301 ~a~G~~p~  308 (488)
                      -|-|....
T Consensus       161 gADG~~S~  168 (400)
T PRK06475        161 ACDGVWSM  168 (400)
T ss_pred             ECCCccHh
Confidence            99998754

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=97.56  E-value=0.00025  Score=79.00  Aligned_cols=92  Identities=24%  Similarity=0.302  Sum_probs=67.8

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc--------ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeC
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG  278 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~--------~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~  278 (488)
                      +++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...        .++.++.+...+.+++.||++++++.+..    
T Consensus       430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg~----  505 (1006)
T PRK12775        430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVIGK----  505 (1006)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCccCC----
Confidence            578999999999999999999999999999987654211        13556777777888999999999864310    


Q ss_pred             CCCcEEEEEeCCC-cEEEcCEEEEeecCc-cC
Q 011351          279 SDGRVAAVKLEDG-STIDADTIVIGIGAK-PT  308 (488)
Q Consensus       279 ~~~~v~~v~l~~g-~~i~~D~vi~a~G~~-p~  308 (488)
                            .+.+.+- +...+|.||+|||.. |.
T Consensus       506 ------~~~~~~l~~~~~yDaViIATGa~~pr  531 (1006)
T PRK12775        506 ------TFTVPQLMNDKGFDAVFLGVGAGAPT  531 (1006)
T ss_pred             ------ccCHHHHhhccCCCEEEEecCCCCCC
Confidence                  1122111 124589999999985 44

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.56  E-value=0.00038  Score=71.87  Aligned_cols=77  Identities=17%  Similarity=0.167  Sum_probs=56.7

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      ..++|+|||+|.+|+++|..|+++|.   +|+++|..+...                                .....+.
T Consensus        15 ~~~~v~viG~G~~G~~~A~~L~~~G~---~V~~~d~~~~~~--------------------------------~~~~~~~   59 (480)
T PRK01438         15 QGLRVVVAGLGVSGFAAADALLELGA---RVTVVDDGDDER--------------------------------HRALAAI   59 (480)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCchhh--------------------------------hHHHHHH
Confidence            35689999999999999999999987   799998653210                                0112345


Q ss_pred             HHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCC
Q 011351          130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS  175 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~  175 (488)
                      +++.|++++.+..+.              ....+|.+|+++|..+.
T Consensus        60 l~~~gv~~~~~~~~~--------------~~~~~D~Vv~s~Gi~~~   91 (480)
T PRK01438         60 LEALGATVRLGPGPT--------------LPEDTDLVVTSPGWRPD   91 (480)
T ss_pred             HHHcCCEEEECCCcc--------------ccCCCCEEEECCCcCCC
Confidence            677899998875432              01458999999998765

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=97.56  E-value=0.0049  Score=62.59  Aligned_cols=100  Identities=18%  Similarity=0.272  Sum_probs=73.1

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCc-EEEEecCCcCccc-----------------------cc------C--HHHHH
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPENHLLQR-----------------------LF------T--PSLAQ  253 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~-v~lv~~~~~~l~~-----------------------~~------~--~~~~~  253 (488)
                      ...+++|||+|++|+-+|..|.+.|.. +.++++++.+-..                       .+      .  ..+.+
T Consensus         7 ~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~   86 (443)
T COG2072           7 THTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKD   86 (443)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHHH
Confidence            346799999999999999999999998 9999887421110                       01      0  12577


Q ss_pred             HHHHHHHHcCcE--EEcCCeEEEEEeCCCCcEEEEEeCCCcE--EEcCEEEEeecC
Q 011351          254 RYEQLYQQNGVK--FVKGASIKNLEAGSDGRVAAVKLEDGST--IDADTIVIGIGA  305 (488)
Q Consensus       254 ~~~~~l~~~GV~--v~~~~~v~~i~~~~~~~v~~v~l~~g~~--i~~D~vi~a~G~  305 (488)
                      ++...+++.++.  +..++.|+.+..++++..-.|++++|.+  +.+|.||+|||.
T Consensus        87 y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~  142 (443)
T COG2072          87 YIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGH  142 (443)
T ss_pred             HHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecC
Confidence            788888877654  4455666666666666666788888765  459999999998

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.54  E-value=0.0011  Score=66.21  Aligned_cols=98  Identities=19%  Similarity=0.292  Sum_probs=70.7

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCC----cCc--cc--cc---------------------------------
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN----HLL--QR--LF---------------------------------  247 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~----~~l--~~--~~---------------------------------  247 (488)
                      +|+|||+|+.|+-+|..|++.|.+|+++++.+    .+.  .+  .+                                 
T Consensus         3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~   82 (374)
T PRK06617          3 NTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDNK   82 (374)
T ss_pred             cEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEECC
Confidence            58999999999999999999999999999641    100  00  00                                 


Q ss_pred             --------------------CHHHHHHHHHHHHHc-CcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCc
Q 011351          248 --------------------TPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  306 (488)
Q Consensus       248 --------------------~~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~  306 (488)
                                          ...+.+.+.+.+.+. +++++.+++++++...+++ + .+.++++ ++.+|+||-|-|..
T Consensus        83 g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~-v-~v~~~~~-~~~adlvIgADG~~  159 (374)
T PRK06617         83 ASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDY-S-IIKFDDK-QIKCNLLIICDGAN  159 (374)
T ss_pred             CceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCe-E-EEEEcCC-EEeeCEEEEeCCCC
Confidence                                012334444555555 4899999999999865433 3 4777776 89999999999987


Q ss_pred             cCC
Q 011351          307 PTV  309 (488)
Q Consensus       307 p~~  309 (488)
                      ...
T Consensus       160 S~v  162 (374)
T PRK06617        160 SKV  162 (374)
T ss_pred             chh
Confidence            653

>PRK09897 hypothetical protein; Provisional

Probab=97.53  E-value=0.0015  Score=67.46  Aligned_cols=99  Identities=18%  Similarity=0.220  Sum_probs=65.8

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCcCcc-----------------------------------------
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQ-----------------------------------------  244 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g--~~v~lv~~~~~~l~-----------------------------------------  244 (488)
                      ++|+|||+|+.|+-++..|.+.+  .+|++++++..+-.                                         
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~   81 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL   81 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence            57999999999999999998764  37899887522110                                         


Q ss_pred             -----------------cc-cCHHHHHH---HHHHHHHcC--cEEEcCCeEEEEEeCCCCcEEEEEeCC-CcEEEcCEEE
Q 011351          245 -----------------RL-FTPSLAQR---YEQLYQQNG--VKFVKGASIKNLEAGSDGRVAAVKLED-GSTIDADTIV  300 (488)
Q Consensus       245 -----------------~~-~~~~~~~~---~~~~l~~~G--V~v~~~~~v~~i~~~~~~~v~~v~l~~-g~~i~~D~vi  300 (488)
                                       +. ++..+...   +.+.+.+.|  +.++.+++|+.++..+++ + .+.+.+ |..+.+|.||
T Consensus        82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g-~-~V~t~~gg~~i~aD~VV  159 (534)
T PRK09897         82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAG-V-MLATNQDLPSETFDLAV  159 (534)
T ss_pred             HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCE-E-EEEECCCCeEEEcCEEE
Confidence                             00 00011122   222334555  788889899999865433 3 466655 4679999999


Q ss_pred             EeecCccC
Q 011351          301 IGIGAKPT  308 (488)
Q Consensus       301 ~a~G~~p~  308 (488)
                      +|+|..++
T Consensus       160 LAtGh~~p  167 (534)
T PRK09897        160 IATGHVWP  167 (534)
T ss_pred             ECCCCCCC
Confidence            99997543

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=97.53  E-value=0.00027  Score=75.52  Aligned_cols=92  Identities=21%  Similarity=0.265  Sum_probs=67.9

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc-------cc-ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------QR-LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  277 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l-------~~-~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~  277 (488)
                      .+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.       +. .++.++.+...+.+++.|+++++++.+. .  
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~-~--  268 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFG-R--  268 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCccc-C--
Confidence            46799999999999999999999999999999887641       11 1345566666677888999999887541 1  


Q ss_pred             CCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351          278 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  308 (488)
Q Consensus       278 ~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~  308 (488)
                             .+.+.+.+ ..+|.|++|+|..+.
T Consensus       269 -------dv~~~~~~-~~~DaVilAtGa~~~  291 (652)
T PRK12814        269 -------DITLEELQ-KEFDAVLLAVGAQKA  291 (652)
T ss_pred             -------ccCHHHHH-hhcCEEEEEcCCCCC
Confidence                   11222222 359999999998754

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=97.53  E-value=0.0038  Score=71.07  Aligned_cols=37  Identities=30%  Similarity=0.356  Sum_probs=33.3

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   89 (488)
                      ...||||||+|.||++||.++++.|.   +|+|+||.+..
T Consensus       408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga---~VivlEK~~~~  444 (1167)
T PTZ00306        408 LPARVIVVGGGLAGCSAAIEAASCGA---QVILLEKEAKL  444 (1167)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEEccCCC
Confidence            35799999999999999999999887   89999998753

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=97.53  E-value=0.00058  Score=67.77  Aligned_cols=93  Identities=23%  Similarity=0.309  Sum_probs=64.0

Q ss_pred             EEEECCCHHHHHHHHHHHhC--CCcEEEEecCCcCccc--------ccCHHHH---------------------------
Q 011351          210 VVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQR--------LFTPSLA---------------------------  252 (488)
Q Consensus       210 vvVvG~G~~g~e~A~~l~~~--g~~v~lv~~~~~~l~~--------~~~~~~~---------------------------  252 (488)
                      ++|||+|+.|+.+|..|.+.  |.+|.++++.+.+.+.        .+++...                           
T Consensus         2 viIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~~   81 (370)
T TIGR01789         2 CIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLKT   81 (370)
T ss_pred             EEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcCC
Confidence            78999999999999999987  8999999987633221        0111110                           


Q ss_pred             -------HHHHHH-HHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351          253 -------QRYEQL-YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  308 (488)
Q Consensus       253 -------~~~~~~-l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~  308 (488)
                             ..+.+. +++.+..++++.+|++++.  +    .+++.+|+++.+|.||.|.|..+.
T Consensus        82 ~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~--~----~v~l~dg~~~~A~~VI~A~G~~s~  139 (370)
T TIGR01789        82 AYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDA--D----GVDLAPGTRINARSVIDCRGFKPS  139 (370)
T ss_pred             CceEEEHHHHHHHHHHhhcccEEecCEEEEEeC--C----EEEECCCCEEEeeEEEECCCCCCC
Confidence                   011112 2333444777888988853  2    355688999999999999998864

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PRK10015 oxidoreductase; Provisional

Probab=97.52  E-value=0.0013  Score=66.69  Aligned_cols=98  Identities=19%  Similarity=0.306  Sum_probs=71.3

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc------------------ccc-----------------------
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL------------------QRL-----------------------  246 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l------------------~~~-----------------------  246 (488)
                      -.|+|||+|+.|+-+|..|++.|.+|.++++.+.+-                  +..                       
T Consensus         6 ~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~   85 (429)
T PRK10015          6 FDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEESA   85 (429)
T ss_pred             cCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCCCc
Confidence            369999999999999999999999999998763210                  000                       


Q ss_pred             --c------------------CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCc
Q 011351          247 --F------------------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  306 (488)
Q Consensus       247 --~------------------~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~  306 (488)
                        +                  ...+.+.+.+.+++.|++++.+++|+.+... ++.+..+.. ++.++.+|.||.|.|..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~-~~~v~~v~~-~~~~i~A~~VI~AdG~~  163 (429)
T PRK10015         86 VTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVRE-GNKVTGVQA-GDDILEANVVILADGVN  163 (429)
T ss_pred             eEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEe-CCEEEEEEe-CCeEEECCEEEEccCcc
Confidence              0                  0012234556667889999999999998754 455544543 44579999999999975


Q ss_pred             c
Q 011351          307 P  307 (488)
Q Consensus       307 p  307 (488)
                      .
T Consensus       164 s  164 (429)
T PRK10015        164 S  164 (429)
T ss_pred             h
Confidence            4

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.51  E-value=0.0013  Score=66.04  Aligned_cols=106  Identities=28%  Similarity=0.409  Sum_probs=73.8

Q ss_pred             CeEEEECCCHHHHHHHHHHHhC---CCcEEEEecCC-c-------------Cccc---------c---------------
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPEN-H-------------LLQR---------L---------------  246 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~---g~~v~lv~~~~-~-------------~l~~---------~---------------  246 (488)
                      -+|+|||+|+.|+-+|..|++.   |.+|+++++.. .             +.+.         .               
T Consensus         4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~   83 (395)
T PRK05732          4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHIH   83 (395)
T ss_pred             CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEEE
Confidence            4689999999999999999998   99999999831 1             0000         0               


Q ss_pred             -----------cC---------------HHHHHHHHHHHHH-cCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEE
Q 011351          247 -----------FT---------------PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTI  299 (488)
Q Consensus       247 -----------~~---------------~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~v  299 (488)
                                 +.               ..+.+.+.+.+.+ .|++++.+++++++...+ +.+ .+.+++|+++.+|.|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~-~~~-~v~~~~g~~~~a~~v  161 (395)
T PRK05732         84 VSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQ-GSV-RVTLDDGETLTGRLL  161 (395)
T ss_pred             EecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcC-CeE-EEEECCCCEEEeCEE
Confidence                       00               0112233444444 479999999999997543 333 477788888999999


Q ss_pred             EEeecCccCChhhhhcCC
Q 011351          300 VIGIGAKPTVSPFERVGL  317 (488)
Q Consensus       300 i~a~G~~p~~~~~~~~gl  317 (488)
                      |.|.|....  +.+.+++
T Consensus       162 I~AdG~~S~--vr~~~~~  177 (395)
T PRK05732        162 VAADGSHSA--LREALGI  177 (395)
T ss_pred             EEecCCChh--hHHhhCC
Confidence            999998764  3444444

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=97.50  E-value=0.0012  Score=66.07  Aligned_cols=106  Identities=25%  Similarity=0.344  Sum_probs=73.7

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc-c-----------------------------------------
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-R-----------------------------------------  245 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~-~-----------------------------------------  245 (488)
                      ..|+|||+|+.|+-+|..|++.|.+|+++++.+.... +                                         
T Consensus         8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~~~   87 (388)
T PRK07494          8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGRLI   87 (388)
T ss_pred             CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCCCC
Confidence            4699999999999999999999999999998632100 0                                         


Q ss_pred             -----cc---------------CHHHHHHHHHHHHHc-CcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeec
Q 011351          246 -----LF---------------TPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG  304 (488)
Q Consensus       246 -----~~---------------~~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G  304 (488)
                           .+               ...+.+.+.+.+.+. ++. ++++++++++..++ .+ .+.+++|+++.+|.||.|.|
T Consensus        88 ~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~-~~-~v~~~~g~~~~a~~vI~AdG  164 (388)
T PRK07494         88 RAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRPRED-EV-TVTLADGTTLSARLVVGADG  164 (388)
T ss_pred             CCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEEcCC-eE-EEEECCCCEEEEeEEEEecC
Confidence                 00               011233344445554 466 77999999976533 33 47788898999999999999


Q ss_pred             CccCChhhhhcCCc
Q 011351          305 AKPTVSPFERVGLN  318 (488)
Q Consensus       305 ~~p~~~~~~~~gl~  318 (488)
                      ....  +-+.+++.
T Consensus       165 ~~S~--vr~~~g~~  176 (388)
T PRK07494        165 RNSP--VREAAGIG  176 (388)
T ss_pred             CCch--hHHhcCCC
Confidence            9763  33444443

>PRK06185 hypothetical protein; Provisional

Probab=97.48  E-value=0.0016  Score=65.77  Aligned_cols=109  Identities=25%  Similarity=0.332  Sum_probs=74.5

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc-----------------------------------------
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----------------------------------------  245 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~-----------------------------------------  245 (488)
                      ...|+|||+|+.|+-+|..|++.|.+|+++++.+.+...                                         
T Consensus         6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~~   85 (407)
T PRK06185          6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGGR   85 (407)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECCe
Confidence            356999999999999999999999999999976321000                                         


Q ss_pred             ---c--c--------------CHHHHHHHHHHHHH-cCcEEEcCCeEEEEEeCCCCcEEEEE--eCCCc-EEEcCEEEEe
Q 011351          246 ---L--F--------------TPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVK--LEDGS-TIDADTIVIG  302 (488)
Q Consensus       246 ---~--~--------------~~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~~~v~~v~--l~~g~-~i~~D~vi~a  302 (488)
                         .  +              ...+.+.+.+.+++ .|++++.+++++++..+ ++.+..+.  ..+|+ ++.+|.||.|
T Consensus        86 ~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~-~~~v~~v~~~~~~g~~~i~a~~vI~A  164 (407)
T PRK06185         86 TVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEE-GGRVTGVRARTPDGPGEIRADLVVGA  164 (407)
T ss_pred             EEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEe-CCEEEEEEEEcCCCcEEEEeCEEEEC
Confidence               0  0              01122334444444 48999999999999865 44444343  34664 7999999999


Q ss_pred             ecCccCChhhhhcCCc
Q 011351          303 IGAKPTVSPFERVGLN  318 (488)
Q Consensus       303 ~G~~p~~~~~~~~gl~  318 (488)
                      .|....  +-+.+++.
T Consensus       165 dG~~S~--vr~~~gi~  178 (407)
T PRK06185        165 DGRHSR--VRALAGLE  178 (407)
T ss_pred             CCCchH--HHHHcCCC
Confidence            998753  33444544

>PLN02785 Protein HOTHEAD

Probab=97.48  E-value=0.0024  Score=67.08  Aligned_cols=62  Identities=15%  Similarity=0.235  Sum_probs=42.9

Q ss_pred             HHHHHHcCcEEEcCCeEEEEEeCCC---CcEEEEEeC--CCcEE-------EcCEEEEeecCccCChhhhhcCC
Q 011351          256 EQLYQQNGVKFVKGASIKNLEAGSD---GRVAAVKLE--DGSTI-------DADTIVIGIGAKPTVSPFERVGL  317 (488)
Q Consensus       256 ~~~l~~~GV~v~~~~~v~~i~~~~~---~~v~~v~l~--~g~~i-------~~D~vi~a~G~~p~~~~~~~~gl  317 (488)
                      .......++++.+++.|++|.-++.   +++++|++.  +|.+.       ....||+|.|.-....+|..+|+
T Consensus       227 ~~~~~~~nl~Vl~~a~V~rIl~~~~~~~~ra~GV~~~~~~g~~~~~~~~~~~~~eVILsAGai~sP~lL~~SGI  300 (587)
T PLN02785        227 LAAGNPNKLRVLLHATVQKIVFDTSGKRPRATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGI  300 (587)
T ss_pred             HhhcCCCCeEEEeCCEEEEEEEcCCCCCceEEEEEEEECCCceEEEEeecccCceEEecccccCCHHHHHHcCC
Confidence            3345567899999999999876532   367788874  45432       24689999998665566665554

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=97.48  E-value=0.00013  Score=72.85  Aligned_cols=37  Identities=19%  Similarity=0.158  Sum_probs=33.8

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY   91 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~   91 (488)
                      +||+|+|||+|||+||++|+++|+   +|||+|.++....
T Consensus         1 ~rVai~GaG~AgL~~a~~La~~g~---~vt~~ea~~~~GG   37 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELADAGY---DVTLYEARDRLGG   37 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCC---ceEEEeccCccCc
Confidence            489999999999999999999998   8999999987643

>PLN02568 polyamine oxidase

Probab=97.48  E-value=0.00014  Score=75.42  Aligned_cols=43  Identities=21%  Similarity=0.173  Sum_probs=35.5

Q ss_pred             CCCCCeEEEEcCchHHHHHHHHHHHcCC--CCCcEEEEcCCCCCC
Q 011351           48 ANENREFVIVGGGNAAGYAARTFVEHGM--ADGRLCIVSKEAYAP   90 (488)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~--~~~~V~lie~~~~~~   90 (488)
                      +++.++|+|||||+|||+||..|.+.|.  +..+|+|+|++....
T Consensus         2 ~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~G   46 (539)
T PLN02568          2 VAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIG   46 (539)
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcC
Confidence            4556899999999999999999999871  123899999988753

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.46  E-value=0.00036  Score=74.71  Aligned_cols=92  Identities=21%  Similarity=0.345  Sum_probs=67.2

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc--------cccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  277 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~--------~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~  277 (488)
                      .+++|+|||+|+.|+..|..|++.|.+|+++++.+.+-.        ..++.++.....+.+++.|++++.++.+..   
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~---  402 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGK---  402 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCC---
Confidence            468999999999999999999999999999998765321        113455656566778889999999976521   


Q ss_pred             CCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351          278 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  308 (488)
Q Consensus       278 ~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~  308 (488)
                        +     +.+.+- ...+|.|++|+|....
T Consensus       403 --~-----i~~~~~-~~~~DavilAtGa~~~  425 (654)
T PRK12769        403 --D-----ISLESL-LEDYDAVFVGVGTYRS  425 (654)
T ss_pred             --c-----CCHHHH-HhcCCEEEEeCCCCCC
Confidence              0     111111 2469999999998643

>PLN02268 probable polyamine oxidase

Probab=97.44  E-value=0.00014  Score=74.04  Aligned_cols=37  Identities=19%  Similarity=0.332  Sum_probs=33.3

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY   91 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~   91 (488)
                      ++|+|||||+|||+||+.|.+.|+   +|+|+|+++....
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~g~---~v~vlEa~~r~GG   37 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDASF---KVTLLESRDRIGG   37 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCC---eEEEEeCCCCCCc
Confidence            479999999999999999999887   8999999987643

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=97.44  E-value=0.00032  Score=71.40  Aligned_cols=30  Identities=23%  Similarity=0.307  Sum_probs=27.8

Q ss_pred             EEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           56 IVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        56 IIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      |||+|.||++||.++++.|.   +|+||||.+.
T Consensus         1 VVG~G~AGl~AA~~Aa~~Ga---~V~vlEK~~~   30 (432)
T TIGR02485         1 VIGGGLAGLCAAIEARRAGA---SVLLLEAAPR   30 (432)
T ss_pred             CCcccHHHHHHHHHHHhCCC---cEEEEeCCCC
Confidence            79999999999999999987   8999999874

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=97.42  E-value=0.0011  Score=67.15  Aligned_cols=98  Identities=16%  Similarity=0.258  Sum_probs=68.1

Q ss_pred             eEEEECCCHHHHHHHHHHHhCC-CcEEEEecCCcCcccc----cCHH---------------------------------
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHLLQRL----FTPS---------------------------------  250 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g-~~v~lv~~~~~~l~~~----~~~~---------------------------------  250 (488)
                      +|+|||+|+.|+-+|..|.+.| .+|+++++.+.+....    +.+.                                 
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~   81 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR   81 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence            6899999999999999999998 5999999874421100    0000                                 


Q ss_pred             --------------------H-HHHHHHHHHHc--CcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCcc
Q 011351          251 --------------------L-AQRYEQLYQQN--GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  307 (488)
Q Consensus       251 --------------------~-~~~~~~~l~~~--GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p  307 (488)
                                          + ...+.+.|.+.  ++.+++++++++++..+++  ..+.+++|+++.+|.||.|.|...
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vVgADG~~S  159 (414)
T TIGR03219        82 NGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPEGIASFGKRATQIEEQAEE--VQVLFTDGTEYRCDLLIGADGIKS  159 (414)
T ss_pred             ecCccceeeeeccccCCcccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecCCc--EEEEEcCCCEEEeeEEEECCCccH
Confidence                                0 01112222221  4567889999999865443  367888999999999999999875


Q ss_pred             C
Q 011351          308 T  308 (488)
Q Consensus       308 ~  308 (488)
                      .
T Consensus       160 ~  160 (414)
T TIGR03219       160 A  160 (414)
T ss_pred             H
Confidence            3

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=97.42  E-value=0.00017  Score=71.37  Aligned_cols=35  Identities=17%  Similarity=0.275  Sum_probs=31.8

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      +++|+|||||++|+.+|..|++.|+   +|+|+|+.+.
T Consensus         2 ~~dVvVIGGGlAGleAAlaLAr~Gl---~V~LiE~rp~   36 (436)
T PRK05335          2 MKPVNVIGAGLAGSEAAWQLAKRGV---PVELYEMRPV   36 (436)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC---cEEEEEccCc
Confidence            4699999999999999999999988   8999997654

>TIGR00275 flavoprotein, HI0933 family

Probab=97.41  E-value=0.0013  Score=66.07  Aligned_cols=94  Identities=17%  Similarity=0.352  Sum_probs=67.7

Q ss_pred             EEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc----------------------c----------------------
Q 011351          211 VVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------------------L----------------------  246 (488)
Q Consensus       211 vVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~----------------------~----------------------  246 (488)
                      +|||+|+.|+-+|..+++.|.+|+++++.+.+...                      .                      
T Consensus         1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~   80 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID   80 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence            58999999999999999999999988876432110                      0                      


Q ss_pred             ----------------------cCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeec
Q 011351          247 ----------------------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG  304 (488)
Q Consensus       247 ----------------------~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G  304 (488)
                                            ....+.+.+.+.+++.|+++++++.+++++.. ++. ..+.+ +++++.+|.||+|+|
T Consensus        81 ~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~-~~~-~~v~~-~~~~i~ad~VIlAtG  157 (400)
T TIGR00275        81 FFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKD-DNG-FGVET-SGGEYEADKVILATG  157 (400)
T ss_pred             HHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEec-CCe-EEEEE-CCcEEEcCEEEECCC
Confidence                                  00123344556677889999999999999754 332 34555 456799999999999


Q ss_pred             Ccc
Q 011351          305 AKP  307 (488)
Q Consensus       305 ~~p  307 (488)
                      ...
T Consensus       158 ~~s  160 (400)
T TIGR00275       158 GLS  160 (400)
T ss_pred             Ccc
Confidence            753

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PLN02576 protoporphyrinogen oxidase

Probab=97.39  E-value=0.00021  Score=74.21  Aligned_cols=39  Identities=15%  Similarity=0.296  Sum_probs=34.4

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHc-CCCCCcEEEEcCCCCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKEAYAP   90 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~-g~~~~~V~lie~~~~~~   90 (488)
                      ..+++|+|||||++||+||+.|.+. |.   +|+|+|+++...
T Consensus        10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~---~v~vlEa~~rvG   49 (496)
T PLN02576         10 ASSKDVAVVGAGVSGLAAAYALASKHGV---NVLVTEARDRVG   49 (496)
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHhcCC---CEEEEecCCCCC
Confidence            3456899999999999999999998 77   899999998754

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=97.39  E-value=0.0034  Score=55.78  Aligned_cols=103  Identities=22%  Similarity=0.263  Sum_probs=68.8

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccc------c-------------------------------CH
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL------F-------------------------------TP  249 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~------~-------------------------------~~  249 (488)
                      ...++|||+|++|+-+|..|++.|.+|.++++...+-...      |                               ..
T Consensus        17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d~~   96 (230)
T PF01946_consen   17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVADSV   96 (230)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-HH
T ss_pred             cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEcHH
Confidence            3569999999999999999999999999999874322110      0                               01


Q ss_pred             HHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC-----------CCcEEEcCEEEEeecCccCC
Q 011351          250 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-----------DGSTIDADTIVIGIGAKPTV  309 (488)
Q Consensus       250 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~-----------~g~~i~~D~vi~a~G~~p~~  309 (488)
                      ++...+....-+.|+++.....++.+--.+++++.++...           |--.+.+..||-+||.....
T Consensus        97 ~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~v  167 (230)
T PF01946_consen   97 EFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAEV  167 (230)
T ss_dssp             HHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSSS
T ss_pred             HHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchHH
Confidence            1222333334458999999999999876555788888764           22379999999999998654

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=97.37  E-value=0.00024  Score=69.75  Aligned_cols=40  Identities=28%  Similarity=0.370  Sum_probs=34.9

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~   90 (488)
                      ....+|||||||+|||+||.+|.++|+.  +++|+|.++...
T Consensus        19 ~~~~kIvIIGAG~AGLaAA~rLle~gf~--~~~IlEa~dRIG   58 (498)
T KOG0685|consen   19 RGNAKIVIIGAGIAGLAAATRLLENGFI--DVLILEASDRIG   58 (498)
T ss_pred             cCCceEEEECCchHHHHHHHHHHHhCCc--eEEEEEeccccC
Confidence            3456999999999999999999998875  899999988653

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=97.37  E-value=0.0025  Score=65.06  Aligned_cols=64  Identities=14%  Similarity=0.274  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC--CCc--EEEcCEEEEeecC-ccCChhhhh
Q 011351          251 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--DGS--TIDADTIVIGIGA-KPTVSPFER  314 (488)
Q Consensus       251 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~--~g~--~i~~D~vi~a~G~-~p~~~~~~~  314 (488)
                      +...+.+.+++.|+++++++.++++..++++++.++...  +++  .+.++.||+|+|- ..|.++++.
T Consensus       132 l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~n~~m~~~  200 (439)
T TIGR01813       132 IVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGSNKEMIAK  200 (439)
T ss_pred             HHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCCCHHHHHH
Confidence            334555667788999999999999987656777666553  343  4789999999994 455444443

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.37  E-value=0.00021  Score=74.02  Aligned_cols=59  Identities=17%  Similarity=0.151  Sum_probs=43.4

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCC----cEEEcCEEEEeecCccC
Q 011351          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG----STIDADTIVIGIGAKPT  308 (488)
Q Consensus       248 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g----~~i~~D~vi~a~G~~p~  308 (488)
                      +..+...+....++.|++++.++.|+++..+ ++ ...+.+.++    .++.++.||.|+|...+
T Consensus       154 ~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~-~~-~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~  216 (502)
T PRK13369        154 DARLVVLNALDAAERGATILTRTRCVSARRE-GG-LWRVETRDADGETRTVRARALVNAAGPWVT  216 (502)
T ss_pred             HHHHHHHHHHHHHHCCCEEecCcEEEEEEEc-CC-EEEEEEEeCCCCEEEEEecEEEECCCccHH
Confidence            3455556667778899999999999999864 33 234555554    35899999999997654

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=97.36  E-value=0.0023  Score=71.75  Aligned_cols=101  Identities=20%  Similarity=0.197  Sum_probs=69.2

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccccc----------CHHHHHHHHHHHHHc-CcEEEcCCeEEEE
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLF----------TPSLAQRYEQLYQQN-GVKFVKGASIKNL  275 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~----------~~~~~~~~~~~l~~~-GV~v~~~~~v~~i  275 (488)
                      ...|+|||+|+.|+..|..+++.|.+|++++..+.+-....          ..+....+.+.+++. +|+++.+++|..+
T Consensus       163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i  242 (985)
T TIGR01372       163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTAFGY  242 (985)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEEEEE
Confidence            46799999999999999999999999999998765432111          112323344555555 5999999999887


Q ss_pred             EeCCCCcEEEEE-eC-------CC------cEEEcCEEEEeecCccCC
Q 011351          276 EAGSDGRVAAVK-LE-------DG------STIDADTIVIGIGAKPTV  309 (488)
Q Consensus       276 ~~~~~~~v~~v~-l~-------~g------~~i~~D~vi~a~G~~p~~  309 (488)
                      ..  ++.+..+. ..       ++      .++.+|.||+|||..+..
T Consensus       243 ~~--~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~  288 (985)
T TIGR01372       243 YD--HNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERP  288 (985)
T ss_pred             ec--CCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcC
Confidence            53  22221111 00       11      158999999999998753

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=97.35  E-value=0.00023  Score=73.74  Aligned_cols=58  Identities=21%  Similarity=0.255  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCC---Cc--EEEcCEEEEeecCccC
Q 011351          249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---GS--TIDADTIVIGIGAKPT  308 (488)
Q Consensus       249 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~---g~--~i~~D~vi~a~G~~p~  308 (488)
                      ..+...+.+..++.|++++.+++|+++..+ ++. ..+.+.+   |+  ++.++.||.|+|...+
T Consensus       155 ~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~-~~~-~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~  217 (508)
T PRK12266        155 ARLVVLNARDAAERGAEILTRTRVVSARRE-NGL-WHVTLEDTATGKRYTVRARALVNAAGPWVK  217 (508)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCcEEEEEEEe-CCE-EEEEEEEcCCCCEEEEEcCEEEECCCccHH
Confidence            445555666678889999999999999754 333 2454443   43  6899999999998654

>PLN02985 squalene monooxygenase

Probab=97.35  E-value=0.00026  Score=73.29  Aligned_cols=38  Identities=18%  Similarity=0.414  Sum_probs=33.9

Q ss_pred             CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      .+.++||+|||||++|+++|..|++.|+   +|+|+|+.+.
T Consensus        40 ~~~~~DViIVGAG~aGlalA~aLa~~G~---~V~vlEr~~~   77 (514)
T PLN02985         40 KDGATDVIIVGAGVGGSALAYALAKDGR---RVHVIERDLR   77 (514)
T ss_pred             cCCCceEEEECCCHHHHHHHHHHHHcCC---eEEEEECcCC
Confidence            4556899999999999999999999987   8999999753

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=97.35  E-value=0.0029  Score=54.48  Aligned_cols=41  Identities=29%  Similarity=0.512  Sum_probs=32.0

Q ss_pred             CcEEE-cCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecC
Q 011351          263 GVKFV-KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  305 (488)
Q Consensus       263 GV~v~-~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~  305 (488)
                      |+++. ...+|+.+...+++  ..+.+.+|..+.+|.||+|+|.
T Consensus       114 ~i~v~~~~~~V~~i~~~~~~--~~v~~~~g~~~~~d~VvLa~Gh  155 (156)
T PF13454_consen  114 GITVRHVRAEVVDIRRDDDG--YRVVTADGQSIRADAVVLATGH  155 (156)
T ss_pred             CcEEEEEeeEEEEEEEcCCc--EEEEECCCCEEEeCEEEECCCC
Confidence            55553 35588999876555  3678899999999999999996

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=97.33  E-value=0.0034  Score=63.03  Aligned_cols=101  Identities=17%  Similarity=0.153  Sum_probs=71.2

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc--c----cc-----------------------------------
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--Q----RL-----------------------------------  246 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l--~----~~-----------------------------------  246 (488)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.+...  .    ..                                   
T Consensus         3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g~   82 (392)
T PRK08243          3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDGR   82 (392)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECCE
Confidence            469999999999999999999999999999775310  0    00                                   


Q ss_pred             -----c-------------CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe-CCCc--EEEcCEEEEeecC
Q 011351          247 -----F-------------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL-EDGS--TIDADTIVIGIGA  305 (488)
Q Consensus       247 -----~-------------~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l-~~g~--~i~~D~vi~a~G~  305 (488)
                           +             .+.+.+.+.+...+.|+++++++++++++..++.. ..|.+ .+|+  ++.+|+||-|-|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~-~~V~~~~~G~~~~i~ad~vVgADG~  161 (392)
T PRK08243         83 RHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDR-PYVTYEKDGEEHRLDCDFIAGCDGF  161 (392)
T ss_pred             EEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCc-eEEEEEcCCeEEEEEeCEEEECCCC
Confidence                 0             01122334444466799999999999987522222 24555 4664  6899999999998


Q ss_pred             ccCC
Q 011351          306 KPTV  309 (488)
Q Consensus       306 ~p~~  309 (488)
                      ....
T Consensus       162 ~S~v  165 (392)
T PRK08243        162 HGVS  165 (392)
T ss_pred             CCch
Confidence            7653

>PRK06126 hypothetical protein; Provisional

Probab=97.33  E-value=0.0027  Score=66.68  Aligned_cols=100  Identities=25%  Similarity=0.366  Sum_probs=69.2

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc------------------------------------------
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------------------------------------  244 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~------------------------------------------  244 (488)
                      ..+|+|||+|+.|+-+|..|++.|.+|+++++.+....                                          
T Consensus         7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~~~   86 (545)
T PRK06126          7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYFTR   86 (545)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEEec
Confidence            35799999999999999999999999999987621000                                          


Q ss_pred             -------c-----c----------------------cC-HHHHHHHHHHHHH-cCcEEEcCCeEEEEEeCCCCcEEEEEe
Q 011351          245 -------R-----L----------------------FT-PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKL  288 (488)
Q Consensus       245 -------~-----~----------------------~~-~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~~~v~~v~l  288 (488)
                             +     .                      .+ ..+.+.+.+.+++ .|+++++++++++++.++++ +. +.+
T Consensus        87 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~-v~-v~~  164 (545)
T PRK06126         87 LTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADG-VT-ATV  164 (545)
T ss_pred             CCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCe-EE-EEE
Confidence                   0     0                      00 0122233444444 48999999999999865433 32 333


Q ss_pred             ---CCCc--EEEcCEEEEeecCccC
Q 011351          289 ---EDGS--TIDADTIVIGIGAKPT  308 (488)
Q Consensus       289 ---~~g~--~i~~D~vi~a~G~~p~  308 (488)
                         .+|+  ++.+|+||.|.|....
T Consensus       165 ~~~~~g~~~~i~ad~vVgADG~~S~  189 (545)
T PRK06126        165 EDLDGGESLTIRADYLVGCDGARSA  189 (545)
T ss_pred             EECCCCcEEEEEEEEEEecCCcchH
Confidence               3454  6899999999998653

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=97.33  E-value=0.00031  Score=75.34  Aligned_cols=39  Identities=28%  Similarity=0.407  Sum_probs=34.7

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~   90 (488)
                      ...++|+|||||++|++||..|.+.|+   +|+|+|+++...
T Consensus       236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~---~v~v~E~~~r~G  274 (808)
T PLN02328        236 VEPANVVVVGAGLAGLVAARQLLSMGF---KVVVLEGRARPG  274 (808)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCC---cEEEEeccccCC
Confidence            456899999999999999999999987   899999987653

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=97.32  E-value=0.00024  Score=74.82  Aligned_cols=36  Identities=17%  Similarity=0.309  Sum_probs=32.8

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      .++.+|+|||||++|+++|..|++.|+   +|+|+|+.+
T Consensus        79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi---~V~V~Er~~  114 (668)
T PLN02927         79 KKKSRVLVAGGGIGGLVFALAAKKKGF---DVLVFEKDL  114 (668)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHhcCC---eEEEEeccc
Confidence            345899999999999999999999998   899999975

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=97.30  E-value=0.0027  Score=63.26  Aligned_cols=96  Identities=23%  Similarity=0.268  Sum_probs=69.5

Q ss_pred             EEEECCCHHHHHHHHHH--HhCCCcEEEEecCCcC--ccc----------------------------------------
Q 011351          210 VVVVGGGYIGMEVAAAA--VGWKLDTTIIFPENHL--LQR----------------------------------------  245 (488)
Q Consensus       210 vvVvG~G~~g~e~A~~l--~~~g~~v~lv~~~~~~--l~~----------------------------------------  245 (488)
                      |+|||+|+.|+-+|..|  ...|.+|.++++.+..  -..                                        
T Consensus         2 viIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~Y   81 (374)
T PF05834_consen    2 VIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYPY   81 (374)
T ss_pred             EEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccce
Confidence            78999999999999999  7788999999876433  100                                        


Q ss_pred             --ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351          246 --LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  308 (488)
Q Consensus       246 --~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~  308 (488)
                        .-...+.+.+.+.++..| .+..+++|++++..++  ...+.+++|+++.++.||-|.|..+.
T Consensus        82 ~~i~~~~f~~~l~~~~~~~~-~~~~~~~V~~i~~~~~--~~~v~~~~g~~i~a~~VvDa~g~~~~  143 (374)
T PF05834_consen   82 CMIDRADFYEFLLERAAAGG-VIRLNARVTSIEETGD--GVLVVLADGRTIRARVVVDARGPSSP  143 (374)
T ss_pred             EEEEHHHHHHHHHHHhhhCC-eEEEccEEEEEEecCc--eEEEEECCCCEEEeeEEEECCCcccc
Confidence              001123444555556444 5667789999986544  24678899999999999999996554

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=97.30  E-value=0.0003  Score=69.30  Aligned_cols=36  Identities=22%  Similarity=0.316  Sum_probs=32.1

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~   90 (488)
                      .||+|||||+||+++|..|++.|.   +|+|+|+++...
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G~---~V~viEk~~~iG   37 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLNK---RVLVVEKRNHIG   37 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCC---eEEEEecCCCCC
Confidence            689999999999999999998876   899999986543

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.30  E-value=0.002  Score=56.91  Aligned_cols=99  Identities=15%  Similarity=0.264  Sum_probs=72.9

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEec--------------------CCcCcccccCHHHHHHHHHHHHHcCcEE
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFP--------------------ENHLLQRLFTPSLAQRYEQLYQQNGVKF  266 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~--------------------~~~~l~~~~~~~~~~~~~~~l~~~GV~v  266 (488)
                      ..+++|||+|+.+.-.|.++++...+..+++.                    -+.+.....++++.+.+++.-++.|-++
T Consensus         8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i   87 (322)
T KOG0404|consen    8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTEI   87 (322)
T ss_pred             eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhccee
Confidence            46899999999999999998877655554432                    2344444567889999999999999999


Q ss_pred             EcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCC
Q 011351          267 VKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  309 (488)
Q Consensus       267 ~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~  309 (488)
                      +.. .|.+++..  ++...+.+ |.+.+.+|.||++||.....
T Consensus        88 ~tE-tVskv~~s--skpF~l~t-d~~~v~~~avI~atGAsAkR  126 (322)
T KOG0404|consen   88 ITE-TVSKVDLS--SKPFKLWT-DARPVTADAVILATGASAKR  126 (322)
T ss_pred             eee-ehhhcccc--CCCeEEEe-cCCceeeeeEEEecccceee
Confidence            876 47777632  33334444 55679999999999987653

>PRK06996 hypothetical protein; Provisional

Probab=97.30  E-value=0.0027  Score=63.93  Aligned_cols=99  Identities=19%  Similarity=0.269  Sum_probs=72.4

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCC----CcEEEEecCCcCcc----c--------------------------------
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWK----LDTTIIFPENHLLQ----R--------------------------------  245 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g----~~v~lv~~~~~~l~----~--------------------------------  245 (488)
                      ....|+|||+|+.|+-+|..|++.|    .+|+++++.+..-.    +                                
T Consensus        10 ~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~   89 (398)
T PRK06996         10 PDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVSQ   89 (398)
T ss_pred             CCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEec
Confidence            3457999999999999999999886    46999987521000    0                                


Q ss_pred             ---------------------cc-CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCC---cEEEcCEEE
Q 011351          246 ---------------------LF-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG---STIDADTIV  300 (488)
Q Consensus       246 ---------------------~~-~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g---~~i~~D~vi  300 (488)
                                           .. -..+.+.+.+.+++.|++++.++++++++...++ + .+.+.++   +++.+|+||
T Consensus        90 ~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~-v-~v~~~~~~g~~~i~a~lvI  167 (398)
T PRK06996         90 RGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADG-V-TLALGTPQGARTLRARIAV  167 (398)
T ss_pred             CCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCe-E-EEEECCCCcceEEeeeEEE
Confidence                                 00 0234566777778889999999999999765433 2 4666654   589999999


Q ss_pred             EeecCc
Q 011351          301 IGIGAK  306 (488)
Q Consensus       301 ~a~G~~  306 (488)
                      -|-|..
T Consensus       168 gADG~~  173 (398)
T PRK06996        168 QAEGGL  173 (398)
T ss_pred             ECCCCC
Confidence            999964

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=97.29  E-value=0.0037  Score=62.30  Aligned_cols=52  Identities=25%  Similarity=0.403  Sum_probs=38.5

Q ss_pred             HHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhh
Q 011351          258 LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE  313 (488)
Q Consensus       258 ~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~  313 (488)
                      .+.+.|++++.+++|+++...+ +.+ .+.+++| ++.+|.||+|+|.... .++.
T Consensus       158 ~~~~~gv~i~~~~~v~~i~~~~-~~~-~v~~~~g-~~~a~~vV~A~G~~~~-~l~~  209 (376)
T PRK11259        158 LAREAGAELLFNEPVTAIEADG-DGV-TVTTADG-TYEAKKLVVSAGAWVK-DLLP  209 (376)
T ss_pred             HHHHCCCEEECCCEEEEEEeeC-CeE-EEEeCCC-EEEeeEEEEecCcchh-hhcc
Confidence            3456789999999999998643 333 5777777 6999999999998643 3443

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=97.28  E-value=0.0004  Score=69.21  Aligned_cols=34  Identities=24%  Similarity=0.209  Sum_probs=31.3

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcC
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  242 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~  242 (488)
                      +|+|||+|..|+|+|..|++.|.+|+++++.+..
T Consensus         2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~   35 (433)
T TIGR00137         2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK   35 (433)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence            6899999999999999999999999999977654

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=97.27  E-value=0.004  Score=63.48  Aligned_cols=101  Identities=23%  Similarity=0.366  Sum_probs=72.1

Q ss_pred             eEEEECCCHHHHHHHHHHHh----CCCcEEEEecCC--cCc------------ccc------------------------
Q 011351          209 KVVVVGGGYIGMEVAAAAVG----WKLDTTIIFPEN--HLL------------QRL------------------------  246 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~----~g~~v~lv~~~~--~~l------------~~~------------------------  246 (488)
                      .|+|||+|+.|+-+|..|++    .|.+|+++++.+  ...            .+.                        
T Consensus         2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~~   81 (437)
T TIGR01989         2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSDR   81 (437)
T ss_pred             cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhhc
Confidence            48999999999999999998    799999999832  110            000                        


Q ss_pred             -------------------cC--------------HHHHHHHHHHHHHcC---cEEEcCCeEEEEEeC-----CCCcEEE
Q 011351          247 -------------------FT--------------PSLAQRYEQLYQQNG---VKFVKGASIKNLEAG-----SDGRVAA  285 (488)
Q Consensus       247 -------------------~~--------------~~~~~~~~~~l~~~G---V~v~~~~~v~~i~~~-----~~~~v~~  285 (488)
                                         ++              ..+...+.+.+++.+   +++++++++++++..     +++.-+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~  161 (437)
T TIGR01989        82 IQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVH  161 (437)
T ss_pred             CCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceE
Confidence                               00              112333445556654   999999999999742     1222246


Q ss_pred             EEeCCCcEEEcCEEEEeecCccCC
Q 011351          286 VKLEDGSTIDADTIVIGIGAKPTV  309 (488)
Q Consensus       286 v~l~~g~~i~~D~vi~a~G~~p~~  309 (488)
                      +.+.+|+++.+|+||-|-|.....
T Consensus       162 v~~~~g~~i~a~llVgADG~~S~v  185 (437)
T TIGR01989       162 ITLSDGQVLYTKLLIGADGSNSNV  185 (437)
T ss_pred             EEEcCCCEEEeeEEEEecCCCChh
Confidence            788999999999999999997643

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK13984 putative oxidoreductase; Provisional

Probab=97.27  E-value=0.00085  Score=71.32  Aligned_cols=91  Identities=19%  Similarity=0.188  Sum_probs=66.9

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc--------cccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  277 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~--------~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~  277 (488)
                      .+++++|||+|+.|+.+|..|.+.|.+|+++++.+.+..        ..+..++.....+.+++.|++++.++.+..-  
T Consensus       282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~--  359 (604)
T PRK13984        282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGKD--  359 (604)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCCEeCCc--
Confidence            578899999999999999999999999999988765421        0123445455556788899999999776320  


Q ss_pred             CCCCcEEEEEeCCCcEEEcCEEEEeecCcc
Q 011351          278 GSDGRVAAVKLEDGSTIDADTIVIGIGAKP  307 (488)
Q Consensus       278 ~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p  307 (488)
                              +.+++ ....+|.||+|+|..+
T Consensus       360 --------~~~~~-~~~~yD~vilAtGa~~  380 (604)
T PRK13984        360 --------IPLEE-LREKHDAVFLSTGFTL  380 (604)
T ss_pred             --------CCHHH-HHhcCCEEEEEcCcCC
Confidence                    11111 1357999999999864

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=97.26  E-value=0.00032  Score=72.65  Aligned_cols=57  Identities=19%  Similarity=0.392  Sum_probs=45.4

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCC-----cEEEcCEEEEeecC
Q 011351          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-----STIDADTIVIGIGA  305 (488)
Q Consensus       248 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g-----~~i~~D~vi~a~G~  305 (488)
                      ...+.+.+.+.+++.|.+|++++.|++|..+ ++++..+.+.++     +++.+|.||+++..
T Consensus       231 ~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~  292 (492)
T TIGR02733       231 MQTLSDRLVEALKRDGGNLLTGQRVTAIHTK-GGRAGWVVVVDSRKQEDLNVKADDVVANLPP  292 (492)
T ss_pred             HHHHHHHHHHHHHhcCCEEeCCceEEEEEEe-CCeEEEEEEecCCCCceEEEECCEEEECCCH
Confidence            3467888888899999999999999999865 344456666554     57899999999775

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.26  E-value=0.00097  Score=70.23  Aligned_cols=92  Identities=22%  Similarity=0.261  Sum_probs=65.7

Q ss_pred             hcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc--------cccCHHHHHHHHHHHHHcCcEEEcCCeE-EEE
Q 011351          205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------RLFTPSLAQRYEQLYQQNGVKFVKGASI-KNL  275 (488)
Q Consensus       205 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~--------~~~~~~~~~~~~~~l~~~GV~v~~~~~v-~~i  275 (488)
                      ..+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+..        ..++.+..+.-.+.+++.|++++.++.+ ..+
T Consensus       135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~  214 (564)
T PRK12771        135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDI  214 (564)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcC
Confidence            4678999999999999999999999999999987765421        1123344444455677899999988755 222


Q ss_pred             EeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351          276 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  308 (488)
Q Consensus       276 ~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~  308 (488)
                      ...        .+    ...+|.|++|+|..+.
T Consensus       215 ~~~--------~~----~~~~D~Vi~AtG~~~~  235 (564)
T PRK12771        215 TLE--------QL----EGEFDAVFVAIGAQLG  235 (564)
T ss_pred             CHH--------HH----HhhCCEEEEeeCCCCC
Confidence            110        01    1248999999998754

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=97.23  E-value=0.00096  Score=64.94  Aligned_cols=55  Identities=15%  Similarity=0.322  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeec
Q 011351          249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG  304 (488)
Q Consensus       249 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G  304 (488)
                      ..++..+.+-+++.|-++.+.++|++|.-+ ++++.+|.+.||+++.+..|+.-++
T Consensus       264 Gavs~aia~~~~~~GaeI~tka~Vq~Illd-~gka~GV~L~dG~ev~sk~VvSNAt  318 (561)
T KOG4254|consen  264 GAVSFAIAEGAKRAGAEIFTKATVQSILLD-SGKAVGVRLADGTEVRSKIVVSNAT  318 (561)
T ss_pred             hHHHHHHHHHHHhccceeeehhhhhheecc-CCeEEEEEecCCcEEEeeeeecCCc
Confidence            457788888899999999999999999865 5889999999999999977776554

>PTZ00367 squalene epoxidase; Provisional

Probab=97.23  E-value=0.00035  Score=72.88  Aligned_cols=36  Identities=22%  Similarity=0.467  Sum_probs=33.0

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      +..+||+|||||++|+++|..|++.|+   +|+|+|+.+
T Consensus        31 ~~~~dViIVGaGiaGlalA~aLar~G~---~V~VlEr~~   66 (567)
T PTZ00367         31 NYDYDVIIVGGSIAGPVLAKALSKQGR---KVLMLERDL   66 (567)
T ss_pred             ccCccEEEECCCHHHHHHHHHHHhcCC---EEEEEcccc
Confidence            456899999999999999999999987   899999875

>PRK07538 hypothetical protein; Provisional

Probab=97.22  E-value=0.004  Score=63.01  Aligned_cols=98  Identities=20%  Similarity=0.248  Sum_probs=67.1

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccc----------------------------------c-------
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL----------------------------------F-------  247 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~----------------------------------~-------  247 (488)
                      +|+|||+|+.|+-+|..|.+.|.+|+++++.+.+.+..                                  +       
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~~   81 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQRI   81 (413)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCEE
Confidence            58999999999999999999999999999874221100                                  0       


Q ss_pred             -------------------CHHHHHHHHHHHHH-cC-cEEEcCCeEEEEEeCCCCcEEEEEeCC-----CcEEEcCEEEE
Q 011351          248 -------------------TPSLAQRYEQLYQQ-NG-VKFVKGASIKNLEAGSDGRVAAVKLED-----GSTIDADTIVI  301 (488)
Q Consensus       248 -------------------~~~~~~~~~~~l~~-~G-V~v~~~~~v~~i~~~~~~~v~~v~l~~-----g~~i~~D~vi~  301 (488)
                                         -..+.+.+.+.+.+ .| +.+++++++++++.++++.+  +.+.+     ++++.+|+||-
T Consensus        82 ~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~--~~~~~~~~g~~~~~~adlvIg  159 (413)
T PRK07538         82 WSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTV--VFLGDRAGGDLVSVRGDVLIG  159 (413)
T ss_pred             eeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceE--EEEeccCCCccceEEeeEEEE
Confidence                               00112223333333 35 57999999999986655533  33333     24799999999


Q ss_pred             eecCccC
Q 011351          302 GIGAKPT  308 (488)
Q Consensus       302 a~G~~p~  308 (488)
                      |-|....
T Consensus       160 ADG~~S~  166 (413)
T PRK07538        160 ADGIHSA  166 (413)
T ss_pred             CCCCCHH
Confidence            9998653

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=97.20  E-value=0.0015  Score=64.44  Aligned_cols=85  Identities=20%  Similarity=0.456  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHc-CcEEEcCCeEEEEEeCCCCcE-EEE-EeC--CCcEEEcCEEEEeecCccCChhhhhcCCcc--cCC
Q 011351          250 SLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRV-AAV-KLE--DGSTIDADTIVIGIGAKPTVSPFERVGLNS--SVG  322 (488)
Q Consensus       250 ~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~~~v-~~v-~l~--~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~--~~g  322 (488)
                      .+.+.+.+.+++. |++++++++|+.++..+++.- +.+ .+.  +.+++.++.|+++.|-.. ..+++.+|+.-  .-|
T Consensus       182 ~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~a-L~LLqksgi~e~~gyg  260 (488)
T PF06039_consen  182 ALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGA-LPLLQKSGIPEGKGYG  260 (488)
T ss_pred             HHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHh-HHHHHHcCChhhcccC
Confidence            4555566667666 999999999999998877732 122 122  335799999999999875 47888888853  234


Q ss_pred             CEEeC-CCCCCCCC
Q 011351          323 GIQVD-GQFRTRMP  335 (488)
Q Consensus       323 ~i~vd-~~~~t~~~  335 (488)
                      +.+|. ..+++..|
T Consensus       261 gfPVsG~fl~~~n~  274 (488)
T PF06039_consen  261 GFPVSGQFLRCKNP  274 (488)
T ss_pred             CCcccceEEecCCH
Confidence            45554 34555433

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=97.17  E-value=0.0012  Score=66.08  Aligned_cols=97  Identities=24%  Similarity=0.397  Sum_probs=65.8

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC------------------------------------------cCccc
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN------------------------------------------HLLQR  245 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~------------------------------------------~~l~~  245 (488)
                      -.|+|||||..|+|.|.+.++.|.++.++....                                          +++..
T Consensus         5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN~   84 (621)
T COG0445           5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLNS   84 (621)
T ss_pred             CceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhccC
Confidence            368999999999999999999999887765441                                          11111


Q ss_pred             ccCHH------------HHHHHHHHHHH-cCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecC
Q 011351          246 LFTPS------------LAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  305 (488)
Q Consensus       246 ~~~~~------------~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~  305 (488)
                      .-+|.            ....+++.++. .++.++.+ .|+.+...++.++.+|.+.+|..+.|+.||++||.
T Consensus        85 sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGT  156 (621)
T COG0445          85 SKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGT  156 (621)
T ss_pred             CCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeecc
Confidence            11111            12233333333 46776655 35565543344688999999999999999999994

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=97.17  E-value=0.0041  Score=62.97  Aligned_cols=58  Identities=26%  Similarity=0.426  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC---CCc--EEEcCEEEEeecCccC
Q 011351          250 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGAKPT  308 (488)
Q Consensus       250 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~---~g~--~i~~D~vi~a~G~~p~  308 (488)
                      .+...+.+.+++.|+++++++.++++..+ +++|+++...   +|+  ++.++.||+|+|-...
T Consensus       142 ~~~~~l~~~~~~~gv~i~~~~~~~~Li~e-~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~  204 (417)
T PF00890_consen  142 ALIEALAKAAEEAGVDIRFNTRVTDLITE-DGRVTGVVAENPADGEFVRIKAKAVILATGGFGG  204 (417)
T ss_dssp             HHHHHHHHHHHHTTEEEEESEEEEEEEEE-TTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred             HHHHHHHHHHhhcCeeeeccceeeeEEEe-CCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence            45667788889999999999999999874 6788888776   454  5789999999997664

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=97.16  E-value=0.00061  Score=64.89  Aligned_cols=99  Identities=15%  Similarity=0.222  Sum_probs=71.7

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHh
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (488)
                      .-+++++|||||.-||..+.-..+.|-   +||++|--+...-   .      .  +.   .+           ....+.
T Consensus       209 ~vPk~~~viG~G~IGLE~gsV~~rLGs---eVT~VEf~~~i~~---~------m--D~---Ei-----------sk~~qr  260 (506)
T KOG1335|consen  209 EVPKKLTVIGAGYIGLEMGSVWSRLGS---EVTVVEFLDQIGG---V------M--DG---EI-----------SKAFQR  260 (506)
T ss_pred             hCcceEEEEcCceeeeehhhHHHhcCC---eEEEEEehhhhcc---c------c--CH---HH-----------HHHHHH
Confidence            446799999999999999999999886   9999995543210   0      0  00   00           122456


Q ss_pred             HHHHCCCeEEeCCcEEEEeCCCc---EEEeCC---C--cEEEeccEEeccCCCCC
Q 011351          129 WYKEKGIEMIYQDPVTSIDIEKQ---TLITNS---G--KLLKYGSLIVATGCTAS  175 (488)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~~---~v~~~~---g--~~i~yd~lVlAtG~~~~  175 (488)
                      .+.+.+++|.++++|+..++...   .|.+++   +  +++.+|.|++++|-+|.
T Consensus       261 ~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~  315 (506)
T KOG1335|consen  261 VLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPF  315 (506)
T ss_pred             HHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCccc
Confidence            67889999999999999987654   344433   2  46899999999997764

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=97.16  E-value=0.0023  Score=65.36  Aligned_cols=71  Identities=15%  Similarity=0.282  Sum_probs=54.4

Q ss_pred             cEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCcc
Q 011351          232 DTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  307 (488)
Q Consensus       232 ~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p  307 (488)
                      .-.+..+.+..+.   +..+-..+....++.|..++.++.|+++... +++..+|.+..|. +++..||-|+|+-.
T Consensus       173 ~g~Ly~P~DG~~D---P~~lC~ala~~A~~~GA~viE~cpV~~i~~~-~~~~~gVeT~~G~-iet~~~VNaaGvWA  243 (856)
T KOG2844|consen  173 YGGLYSPGDGVMD---PAGLCQALARAASALGALVIENCPVTGLHVE-TDKFGGVETPHGS-IETECVVNAAGVWA  243 (856)
T ss_pred             eeeeecCCCcccC---HHHHHHHHHHHHHhcCcEEEecCCcceEEee-cCCccceeccCcc-eecceEEechhHHH
Confidence            3456667765543   2345677778889999999999999999865 3444488888885 99999999999865

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=97.15  E-value=0.0096  Score=56.09  Aligned_cols=53  Identities=19%  Similarity=0.259  Sum_probs=39.3

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCC-CCcEEEEcCCCCCCCCCCCCCccccC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMA-DGRLCIVSKEAYAPYERPALTKGYLF  102 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~-~~~V~lie~~~~~~~~~~~l~~~~~~  102 (488)
                      .+.+|||||||-.|.+.|..|+++-.. +.+|.++|+++...-....++-+.+.
T Consensus        85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~  138 (509)
T KOG2853|consen   85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGIC  138 (509)
T ss_pred             cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeeccee
Confidence            367999999999999999999875432 24899999998754444555544443

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=97.15  E-value=0.0056  Score=61.40  Aligned_cols=100  Identities=19%  Similarity=0.227  Sum_probs=69.6

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc--c----ccc----------------------------------
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--Q----RLF----------------------------------  247 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l--~----~~~----------------------------------  247 (488)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.+...  .    ..+                                  
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~   82 (390)
T TIGR02360         3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDGQ   82 (390)
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCCE
Confidence            569999999999999999999999999999875310  0    000                                  


Q ss_pred             ------------------C-HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC-CCc--EEEcCEEEEeecC
Q 011351          248 ------------------T-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DGS--TIDADTIVIGIGA  305 (488)
Q Consensus       248 ------------------~-~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~-~g~--~i~~D~vi~a~G~  305 (488)
                                        . ..+...+.+.+.+.|+.++++.+++.+...++.. ..|.+. +|+  ++.+|+||-|-|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~-~~V~~~~~g~~~~i~adlvIGADG~  161 (390)
T TIGR02360        83 RFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDR-PYVTFERDGERHRLDCDFIAGCDGF  161 (390)
T ss_pred             EEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCc-cEEEEEECCeEEEEEeCEEEECCCC
Confidence                              0 1122334455566788898888877775422222 246664 775  6899999999998


Q ss_pred             ccC
Q 011351          306 KPT  308 (488)
Q Consensus       306 ~p~  308 (488)
                      ...
T Consensus       162 ~S~  164 (390)
T TIGR02360       162 HGV  164 (390)
T ss_pred             chh
Confidence            764

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PF14721 AIF_C: Apoptosis-inducing factor, mitochondrion-associated, C-term; PDB: 3GD4_A 1GV4_A 3GD3_A 1M6I_A

Probab=97.14  E-value=0.0017  Score=51.48  Aligned_cols=33  Identities=12%  Similarity=0.273  Sum_probs=24.6

Q ss_pred             CcEEEEEEECCEEEEEEeecCChHHhhHHHHHHh
Q 011351          422 PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLAR  455 (488)
Q Consensus       422 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  455 (488)
                      .|-++||+++++|+|+++ .+--..+...|++|+
T Consensus        99 ~kGVVfYLrd~~VvGill-WNvf~~~~~AR~ii~  131 (133)
T PF14721_consen   99 GKGVVFYLRDDRVVGILL-WNVFNRMPIARKIIA  131 (133)
T ss_dssp             SEEEEEEEETTEEEEEEE-ES--S-HHHHHHHHH
T ss_pred             CceEEEEEcCCeEEEEEE-eeccCccHHHHHHhh
Confidence            356889999999999997 455567888888874

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=97.13  E-value=0.0054  Score=64.23  Aligned_cols=54  Identities=19%  Similarity=0.226  Sum_probs=39.5

Q ss_pred             HHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC---CC--cEEEcCEEEEeecCccCChhhh
Q 011351          258 LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DG--STIDADTIVIGIGAKPTVSPFE  313 (488)
Q Consensus       258 ~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~---~g--~~i~~D~vi~a~G~~p~~~~~~  313 (488)
                      ..++.|++++++++|+++... ++++.+|.+.   ++  .++.+|.||.|+|.... .+.+
T Consensus       158 ~A~~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~-~l~~  216 (546)
T PRK11101        158 DAKEHGAQILTYHEVTGLIRE-GDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQ-HIAE  216 (546)
T ss_pred             HHHhCCCEEEeccEEEEEEEc-CCeEEEEEEEEcCCCcEEEEECCEEEECCChhHH-HHHH
Confidence            346789999999999999864 4566666652   23  36999999999997654 3444

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=97.13  E-value=0.00069  Score=63.01  Aligned_cols=32  Identities=25%  Similarity=0.438  Sum_probs=29.1

Q ss_pred             eEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      .|||||+|.|||+|+..+...+-   .|+|+|++.
T Consensus        11 pvvVIGgGLAGLsasn~iin~gg---~V~llek~~   42 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIINKGG---IVILLEKAG   42 (477)
T ss_pred             cEEEECCchhhhhhHHHHHhcCC---eEEEEeccC
Confidence            69999999999999999998764   699999987

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=97.09  E-value=0.0015  Score=70.09  Aligned_cols=94  Identities=22%  Similarity=0.310  Sum_probs=71.9

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc--------cccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  277 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~--------~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~  277 (488)
                      .+++|.|||+|+.|+-.|..|.+.|+.|++++|++++-.        -.+|..+.++-.++|.+.||+|++|+.|-+-  
T Consensus      1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~-- 1861 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKH-- 1861 (2142)
T ss_pred             cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeecccccc--
Confidence            578999999999999999999999999999999987532        1246667777778899999999998754221  


Q ss_pred             CCCCcEEEEEeCCCcEEEcCEEEEeecCccCCh
Q 011351          278 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  310 (488)
Q Consensus       278 ~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~  310 (488)
                              +. -|+-.-+.|.||+|+|..-..+
T Consensus      1862 --------vs-~d~l~~~~daiv~a~gst~prd 1885 (2142)
T KOG0399|consen 1862 --------VS-LDELKKENDAIVLATGSTTPRD 1885 (2142)
T ss_pred             --------cc-HHHHhhccCeEEEEeCCCCCcC
Confidence                    11 2332356799999999864433

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=97.09  E-value=0.00064  Score=66.69  Aligned_cols=39  Identities=23%  Similarity=0.293  Sum_probs=35.6

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~   90 (488)
                      ++..+|+|||+|++||+||.+|.+.|+   +|+|+|..+...
T Consensus         5 ~~~~~viivGaGlaGL~AA~eL~kaG~---~v~ilEar~r~G   43 (450)
T COG1231           5 PKTADVIIVGAGLAGLSAAYELKKAGY---QVQILEARDRVG   43 (450)
T ss_pred             CCCCcEEEECCchHHHHHHHHHhhcCc---EEEEEeccCCcC
Confidence            567899999999999999999999999   899999988754

>TIGR02028 ChlP geranylgeranyl reductase

Probab=97.09  E-value=0.0084  Score=60.26  Aligned_cols=99  Identities=19%  Similarity=0.290  Sum_probs=64.9

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc---ccc---------------------------------------
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL---QRL---------------------------------------  246 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l---~~~---------------------------------------  246 (488)
                      +|+|||+|+.|+-+|..|++.|.+|.++++.+...   ...                                       
T Consensus         2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~~~   81 (398)
T TIGR02028         2 RVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGRTL   81 (398)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEeccCC
Confidence            58999999999999999999999999998763210   000                                       


Q ss_pred             --------cC-HHHHHHHHHHHHHcCcEEEcCCeEEEEEeC-CCCcEEEEEe--CC-----C--cEEEcCEEEEeecCcc
Q 011351          247 --------FT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAG-SDGRVAAVKL--ED-----G--STIDADTIVIGIGAKP  307 (488)
Q Consensus       247 --------~~-~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~-~~~~v~~v~l--~~-----g--~~i~~D~vi~a~G~~p  307 (488)
                              ++ ..+.+.+.+...+.|++++.++ +..+... ..+....+.+  .+     |  .++.+|+||.|.|..+
T Consensus        82 ~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S  160 (398)
T TIGR02028        82 KEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANS  160 (398)
T ss_pred             CCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcch
Confidence                    00 1122334555677899998774 6666421 1122223332  22     3  3799999999999876


Q ss_pred             C
Q 011351          308 T  308 (488)
Q Consensus       308 ~  308 (488)
                      .
T Consensus       161 ~  161 (398)
T TIGR02028       161 R  161 (398)
T ss_pred             H
Confidence            3

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=97.07  E-value=0.0082  Score=56.56  Aligned_cols=62  Identities=23%  Similarity=0.335  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHcCcEEEcCCeEEEEEe-CCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhh
Q 011351          251 LAQRYEQLYQQNGVKFVKGASIKNLEA-GSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE  313 (488)
Q Consensus       251 ~~~~~~~~l~~~GV~v~~~~~v~~i~~-~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~  313 (488)
                      ..+.++..+++.|+.++.+..++.+.- ++++..+.|.+.+|..+.++.+|+++|.--+ .++.
T Consensus       155 slk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~-klL~  217 (399)
T KOG2820|consen  155 SLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWIN-KLLP  217 (399)
T ss_pred             HHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHH-hhcC
Confidence            345677788999999999999888762 2345566899999999999999999998765 4444

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=97.06  E-value=0.0077  Score=60.34  Aligned_cols=104  Identities=21%  Similarity=0.369  Sum_probs=69.5

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecC-CcCc-----------c---------------------c----------
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE-NHLL-----------Q---------------------R----------  245 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~-~~~l-----------~---------------------~----------  245 (488)
                      .|+|||+|+.|+-+|..|++.|.+|.++++. +...           .                     .          
T Consensus         2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (388)
T TIGR02023         2 DVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIPS   81 (388)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccCC
Confidence            4899999999999999999999999999876 2100           0                     0          


Q ss_pred             ---c---cC-HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCC------C--cEEEcCEEEEeecCccCCh
Q 011351          246 ---L---FT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED------G--STIDADTIVIGIGAKPTVS  310 (488)
Q Consensus       246 ---~---~~-~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~------g--~~i~~D~vi~a~G~~p~~~  310 (488)
                         .   ++ ..+.+.+.+...+.|++++.+ +++++..+++ .+ .+.+.+      |  .++.+|+||.|.|....  
T Consensus        82 ~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~-~~-~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~--  156 (388)
T TIGR02023        82 EDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRD-GV-TLTYRTPKKGAGGEKGSVEADVVIGADGANSP--  156 (388)
T ss_pred             CCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCC-eE-EEEEEeccccCCCcceEEEeCEEEECCCCCcH--
Confidence               0   00 012234555567779999765 5888876533 33 344442      2  36999999999998653  


Q ss_pred             hhhhcCC
Q 011351          311 PFERVGL  317 (488)
Q Consensus       311 ~~~~~gl  317 (488)
                      +.+.+++
T Consensus       157 v~r~lg~  163 (388)
T TIGR02023       157 VAKELGL  163 (388)
T ss_pred             HHHHcCC
Confidence            3344444

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>TIGR02730 carot_isom carotene isomerase

Probab=97.05  E-value=0.00068  Score=70.21  Aligned_cols=57  Identities=23%  Similarity=0.284  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCc
Q 011351          249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  306 (488)
Q Consensus       249 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~  306 (488)
                      ..+.+.+.+.+++.|++|++++.|++|..+ ++++.+|.+.+|+++.+|.||+++|..
T Consensus       229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~g~~~~ad~vV~a~~~~  285 (493)
T TIGR02730       229 GQIAESLVKGLEKHGGQIRYRARVTKIILE-NGKAVGVKLADGEKIYAKRIVSNATRW  285 (493)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCeeeEEEec-CCcEEEEEeCCCCEEEcCEEEECCChH
Confidence            457778888899999999999999999864 567778999999999999999998854

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PRK07804 L-aspartate oxidase; Provisional

Probab=97.05  E-value=0.0071  Score=63.30  Aligned_cols=55  Identities=22%  Similarity=0.378  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC-------CC-cEEEcCEEEEeecC
Q 011351          251 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-------DG-STIDADTIVIGIGA  305 (488)
Q Consensus       251 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~-------~g-~~i~~D~vi~a~G~  305 (488)
                      +...+.+.+++.||+++.++.++++..++++++.++...       ++ ..+.++.||+|+|-
T Consensus       146 i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG  208 (541)
T PRK07804        146 VQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGG  208 (541)
T ss_pred             HHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCC
Confidence            444555666777899999999999976545677776553       23 36899999999985

>PRK11445 putative oxidoreductase; Provisional

Probab=97.04  E-value=0.011  Score=58.39  Aligned_cols=96  Identities=21%  Similarity=0.245  Sum_probs=66.4

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc--------ccccCHH------------------------------
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--------QRLFTPS------------------------------  250 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l--------~~~~~~~------------------------------  250 (488)
                      .|+|||+|+.|+-+|..|++. .+|+++++.+.+.        ...+.+.                              
T Consensus         3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~~~   81 (351)
T PRK11445          3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTIDL   81 (351)
T ss_pred             eEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEecc
Confidence            589999999999999999998 9999999775320        0000000                              


Q ss_pred             -------------------HHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe-CCCc--EEEcCEEEEeecCccC
Q 011351          251 -------------------LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL-EDGS--TIDADTIVIGIGAKPT  308 (488)
Q Consensus       251 -------------------~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l-~~g~--~i~~D~vi~a~G~~p~  308 (488)
                                         +.+.+.+ ..+.|++++.++.++.++..+++ + .+.+ .+|+  ++.+|.||.|.|....
T Consensus        82 ~~~~~~~~~~~~~~i~R~~~~~~L~~-~~~~gv~v~~~~~v~~i~~~~~~-~-~v~~~~~g~~~~i~a~~vV~AdG~~S~  158 (351)
T PRK11445         82 ANSLTRNYQRSYINIDRHKFDLWLKS-LIPASVEVYHNSLCRKIWREDDG-Y-HVIFRADGWEQHITARYLVGADGANSM  158 (351)
T ss_pred             cccchhhcCCCcccccHHHHHHHHHH-HHhcCCEEEcCCEEEEEEEcCCE-E-EEEEecCCcEEEEEeCEEEECCCCCcH
Confidence                               0111112 23468999999999999865443 2 3443 5664  6899999999998754

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=97.03  E-value=0.0016  Score=70.68  Aligned_cols=35  Identities=17%  Similarity=0.101  Sum_probs=32.5

Q ss_pred             hcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 011351          205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  239 (488)
Q Consensus       205 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~  239 (488)
                      ..+++|+|||+|+.|+.+|..|+..|.+|+++++.
T Consensus       381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~  415 (1028)
T PRK06567        381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL  415 (1028)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence            36789999999999999999999999999999975

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=97.01  E-value=0.00093  Score=64.69  Aligned_cols=40  Identities=20%  Similarity=0.239  Sum_probs=35.4

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~   90 (488)
                      ..++|+|+|||++||++|++|++.+. +..|+|+|+.+...
T Consensus        10 ~~~~vaVvGGGiSGL~aay~L~r~~p-~~~i~l~Ea~~RvG   49 (491)
T KOG1276|consen   10 SGMTVAVVGGGISGLCAAYYLARLGP-DVTITLFEASPRVG   49 (491)
T ss_pred             ecceEEEECCchhHHHHHHHHHhcCC-CceEEEEecCCccc
Confidence            45799999999999999999999986 67799999998764

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=97.01  E-value=0.0074  Score=59.92  Aligned_cols=47  Identities=23%  Similarity=0.454  Sum_probs=34.8

Q ss_pred             HHHHHHHc-CcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351          255 YEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  308 (488)
Q Consensus       255 ~~~~l~~~-GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~  308 (488)
                      +.+.+.+. |++++.++.|++++..      .|.+.+|+ +.+|.||+|+|...+
T Consensus       151 l~~~~~~~~Gv~i~~~t~V~~i~~~------~v~t~~g~-i~a~~VV~A~G~~s~  198 (365)
T TIGR03364       151 LAAYLAEQHGVEFHWNTAVTSVETG------TVRTSRGD-VHADQVFVCPGADFE  198 (365)
T ss_pred             HHHHHHhcCCCEEEeCCeEEEEecC------eEEeCCCc-EEeCEEEECCCCChh
Confidence            33444554 9999999999998632      46677775 789999999998653

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=97.00  E-value=0.00085  Score=64.94  Aligned_cols=35  Identities=23%  Similarity=0.372  Sum_probs=32.3

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      +.+|+|||||++|+++|..|.+.|+   +|+|+|+...
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~G~---~v~VlE~~e~   36 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRKGI---DVVVLESRED   36 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCC---eEEEEeeccc
Confidence            5789999999999999999999999   8999999654

>PLN02676 polyamine oxidase

Probab=96.98  E-value=0.0011  Score=68.33  Aligned_cols=41  Identities=27%  Similarity=0.368  Sum_probs=34.9

Q ss_pred             CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011351           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (488)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~   90 (488)
                      ...+++|+|||||++||+||++|++.|..  +|+|+|+++...
T Consensus        23 ~~~~~~v~IIGaG~sGL~aa~~L~~~g~~--~v~vlE~~~~~G   63 (487)
T PLN02676         23 AKPSPSVIIVGAGMSGISAAKTLSEAGIE--DILILEATDRIG   63 (487)
T ss_pred             ccCCCCEEEECCCHHHHHHHHHHHHcCCC--cEEEecCCCCCC
Confidence            34568999999999999999999999862  699999987653

>PRK08401 L-aspartate oxidase; Provisional

Probab=96.98  E-value=0.0093  Score=61.24  Aligned_cols=96  Identities=29%  Similarity=0.392  Sum_probs=67.1

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc-------------------------------------------
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------------------------------------------  244 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~-------------------------------------------  244 (488)
                      ..|+|||+|..|+-.|..+++.|.+|.+++..+..-.                                           
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~~   81 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVIS   81 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            4689999999999999999999999999876421000                                           


Q ss_pred             ----------------------------c------ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCC
Q 011351          245 ----------------------------R------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED  290 (488)
Q Consensus       245 ----------------------------~------~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~  290 (488)
                                                  +      .....+.+.+.+.+++.||+++.+ .++.+.. +++++.++.. +
T Consensus        82 ~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~-~~g~v~Gv~~-~  158 (466)
T PRK08401         82 KSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRG-FAEELAI-KNGKAYGVFL-D  158 (466)
T ss_pred             HHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEe-EeEEEEe-eCCEEEEEEE-C
Confidence                                        0      001123444555566778888775 6777764 3566666665 5


Q ss_pred             CcEEEcCEEEEeecCc
Q 011351          291 GSTIDADTIVIGIGAK  306 (488)
Q Consensus       291 g~~i~~D~vi~a~G~~  306 (488)
                      ++.+.++.||+|||-.
T Consensus       159 g~~i~a~~VVLATGG~  174 (466)
T PRK08401        159 GELLKFDATVIATGGF  174 (466)
T ss_pred             CEEEEeCeEEECCCcC
Confidence            6679999999999953

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=96.95  E-value=0.0029  Score=59.25  Aligned_cols=35  Identities=29%  Similarity=0.456  Sum_probs=32.5

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      ...+|+|||+|.|||.||.+|+..|.   +|+|+|++.
T Consensus         4 ~~~dvivvgaglaglvaa~elA~aG~---~V~ildQEg   38 (552)
T COG3573           4 LTADVIVVGAGLAGLVAAAELADAGK---RVLILDQEG   38 (552)
T ss_pred             ccccEEEECccHHHHHHHHHHHhcCc---eEEEEcccc
Confidence            46799999999999999999999998   899999987

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=96.94  E-value=0.0099  Score=60.49  Aligned_cols=64  Identities=14%  Similarity=0.198  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHcCcEEEcCCeEEEEEeCC-CCcEEEEEeCC-CcEEEcCEEEEeec-CccCChhhhh
Q 011351          251 LAQRYEQLYQQNGVKFVKGASIKNLEAGS-DGRVAAVKLED-GSTIDADTIVIGIG-AKPTVSPFER  314 (488)
Q Consensus       251 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~-~~~v~~v~l~~-g~~i~~D~vi~a~G-~~p~~~~~~~  314 (488)
                      +.+.+.+.+++.|+++++++.++++..++ ++++.++...+ +.++.++.||+|+| +..|.+++++
T Consensus       125 l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n~~~~~~  191 (432)
T TIGR02485       125 LTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGANRDWLRK  191 (432)
T ss_pred             HHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccCHHHHHh
Confidence            44556666788899999999999998653 46676666543 35799999999999 4555555544

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=96.92  E-value=0.0049  Score=63.95  Aligned_cols=103  Identities=20%  Similarity=0.439  Sum_probs=76.2

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhC---CCcEEEEecCCcC------cccccCH-----HHHHHHHHHHHHcCcEEEcCCeE
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPENHL------LQRLFTP-----SLAQRYEQLYQQNGVKFVKGASI  272 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~---g~~v~lv~~~~~~------l~~~~~~-----~~~~~~~~~l~~~GV~v~~~~~v  272 (488)
                      ..+++|||.|..|..+..++.+.   -.++|++...+++      +.+.+.+     ++.-.-..+.+++||+++.+.++
T Consensus         3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v   82 (793)
T COG1251           3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKV   82 (793)
T ss_pred             ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCee
Confidence            35799999999999998888874   3468887655432      1222222     23333457789999999999999


Q ss_pred             EEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhh
Q 011351          273 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE  313 (488)
Q Consensus       273 ~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~  313 (488)
                      ..+..+  .+  .|+.++|.++.+|-+|+|||..|......
T Consensus        83 ~~idr~--~k--~V~t~~g~~~~YDkLilATGS~pfi~PiP  119 (793)
T COG1251          83 IQIDRA--NK--VVTTDAGRTVSYDKLIIATGSYPFILPIP  119 (793)
T ss_pred             EEeccC--cc--eEEccCCcEeecceeEEecCccccccCCC
Confidence            999854  22  57889999999999999999999765433

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=96.90  E-value=0.0011  Score=69.67  Aligned_cols=35  Identities=26%  Similarity=0.461  Sum_probs=32.6

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      .+.||||||+|.|||+||.++++.|.   +|+||||.+
T Consensus         3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~---~VivlEK~~   37 (549)
T PRK12834          3 MDADVIVVGAGLAGLVAAAELADAGK---RVLLLDQEN   37 (549)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCC---eEEEEeCCC
Confidence            46899999999999999999999987   899999987

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=96.90  E-value=0.014  Score=58.51  Aligned_cols=87  Identities=14%  Similarity=0.186  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHhCCCcE------EEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCC--C-CcEEEEE
Q 011351          217 YIGMEVAAAAVGWKLDT------TIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS--D-GRVAAVK  287 (488)
Q Consensus       217 ~~g~e~A~~l~~~g~~v------~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~--~-~~v~~v~  287 (488)
                      .+++|+-.+|.+.-.++      .-+.+...   . .-+.+...+.+.|+++||+|.++++|+.++-+.  + ..+..+.
T Consensus       173 hSa~E~rRyl~Rf~h~~~~l~~l~~l~~T~Y---N-QyeSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~  248 (500)
T PF06100_consen  173 HSAVEFRRYLHRFIHEIPGLNDLSGLDRTKY---N-QYESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIH  248 (500)
T ss_pred             hhHHHHHHHHHHHHHhcCCCCCccccccCcc---c-cHHHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEE
Confidence            46778877776652222      11212111   1 124677788999999999999999999987532  2 2233444


Q ss_pred             e-CCCc--EE---EcCEEEEeecCcc
Q 011351          288 L-EDGS--TI---DADTIVIGIGAKP  307 (488)
Q Consensus       288 l-~~g~--~i---~~D~vi~a~G~~p  307 (488)
                      + .+|+  ++   +-|+|++..|..-
T Consensus       249 ~~~~g~~~~i~l~~~DlV~vT~GS~t  274 (500)
T PF06100_consen  249 IEQDGKEETIDLGPDDLVFVTNGSMT  274 (500)
T ss_pred             EEcCCCeeEEEeCCCCEEEEECCccc
Confidence            3 3443  22   4789999888643

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=96.89  E-value=0.0011  Score=66.08  Aligned_cols=34  Identities=21%  Similarity=0.332  Sum_probs=31.0

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      .+|+|||||.||+.+|..|++.|.   +|+|+|+.+.
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~G~---~V~LiE~rp~   34 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQAGV---PVILYEMRPE   34 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCC---cEEEEecccc
Confidence            379999999999999999999988   8999997654

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=96.84  E-value=0.0012  Score=68.51  Aligned_cols=36  Identities=19%  Similarity=0.319  Sum_probs=32.5

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   89 (488)
                      .+.||||||+| ||++||.++++.|.   +|+||||.+..
T Consensus         6 ~~~DVvVVG~G-aGl~aA~~aa~~G~---~V~vlEk~~~~   41 (513)
T PRK12837          6 EEVDVLVAGSG-GGVAGAYTAAREGL---SVALVEATDKF   41 (513)
T ss_pred             CccCEEEECch-HHHHHHHHHHHCCC---cEEEEecCCCC
Confidence            46899999999 99999999999987   89999998753

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=96.82  E-value=0.015  Score=61.40  Aligned_cols=51  Identities=25%  Similarity=0.328  Sum_probs=38.2

Q ss_pred             HHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEeecCc
Q 011351          255 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAK  306 (488)
Q Consensus       255 ~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l---~~g~--~i~~D~vi~a~G~~  306 (488)
                      +.+.+++.||+++.++.++++..+ ++++.++..   .+|+  .+.++.||+|+|-.
T Consensus       135 L~~~~~~~gv~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~  190 (566)
T TIGR01812       135 LYEQCLKLGVSFFNEYFALDLIHD-DGRVRGVVAYDLKTGEIVFFRAKAVVLATGGY  190 (566)
T ss_pred             HHHHHHHcCCEEEeccEEEEEEEe-CCEEEEEEEEECCCCcEEEEECCeEEECCCcc
Confidence            344456679999999999998754 577766653   4564  58999999999954

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=96.80  E-value=0.0013  Score=71.71  Aligned_cols=36  Identities=22%  Similarity=0.246  Sum_probs=30.7

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      .+|+|||||+||+++|..|++.+. ..+|+|+|+.+.
T Consensus         1 m~V~IIGaGpAGLaaAi~L~~~~~-G~~V~vlEr~~~   36 (765)
T PRK08255          1 MRIVCIGGGPAGLYFALLMKLLDP-AHEVTVVERNRP   36 (765)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCC-CCeEEEEecCCC
Confidence            379999999999999999999831 238999999874

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=96.80  E-value=0.0082  Score=58.38  Aligned_cols=103  Identities=24%  Similarity=0.380  Sum_probs=70.4

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccccc----------CHHHHHHHHHHHHHc--CcEEEcCCeEE
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLF----------TPSLAQRYEQLYQQN--GVKFVKGASIK  273 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~----------~~~~~~~~~~~l~~~--GV~v~~~~~v~  273 (488)
                      +.|+|+|+|+|..|+-+...|-..-.+|++|.+++.++-..+          -..+.+.+....++.  +++++. +.-.
T Consensus        54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~e-Aec~  132 (491)
T KOG2495|consen   54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYLE-AECT  132 (491)
T ss_pred             CCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEEe-cccE
Confidence            568999999999999999988888889999999876543222          234566666666655  455543 3445


Q ss_pred             EEEeCCCCcEE-EEEeCCC----cEEEcCEEEEeecCccCCh
Q 011351          274 NLEAGSDGRVA-AVKLEDG----STIDADTIVIGIGAKPTVS  310 (488)
Q Consensus       274 ~i~~~~~~~v~-~v~l~~g----~~i~~D~vi~a~G~~p~~~  310 (488)
                      .++++ ..++. ...++++    ..+.+|++|+|+|..+++-
T Consensus       133 ~iDp~-~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TF  173 (491)
T KOG2495|consen  133 KIDPD-NKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTF  173 (491)
T ss_pred             eeccc-ccEEEEeeeccCCCcceeeecccEEEEeccCCCCCC
Confidence            55543 22221 2233444    3689999999999998863

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=96.79  E-value=0.001  Score=63.89  Aligned_cols=67  Identities=19%  Similarity=0.357  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHcCcEEEcCCeEEEEEe-CCCCcEEEEEeCC--Cc----EEEcCEEEEeecCccCChhhhhcCC
Q 011351          251 LAQRYEQLYQQNGVKFVKGASIKNLEA-GSDGRVAAVKLED--GS----TIDADTIVIGIGAKPTVSPFERVGL  317 (488)
Q Consensus       251 ~~~~~~~~l~~~GV~v~~~~~v~~i~~-~~~~~v~~v~l~~--g~----~i~~D~vi~a~G~~p~~~~~~~~gl  317 (488)
                      ...++...++..|+++++++.|++|.. .+++++++|.+.+  +.    .+.++.||+|.|.--...+|..+|+
T Consensus       195 ~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~SGi  268 (296)
T PF00732_consen  195 ATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRSGI  268 (296)
T ss_dssp             HHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHTTE
T ss_pred             hhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhccccc
Confidence            345566666666999999999999944 2466777776643  33    4678999999998666577777777

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=96.79  E-value=0.019  Score=58.59  Aligned_cols=106  Identities=19%  Similarity=0.281  Sum_probs=68.6

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc---ccc--------------------------------------
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL---QRL--------------------------------------  246 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l---~~~--------------------------------------  246 (488)
                      -.|+|||+|+.|.-+|..|++.|.+|.++++.....   ...                                      
T Consensus        40 ~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~~~~  119 (450)
T PLN00093         40 LRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGKT  119 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEeccc
Confidence            469999999999999999999999999998763210   000                                      


Q ss_pred             ---------cC-HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCC--CCcEEEEEeCC-------C--cEEEcCEEEEeecC
Q 011351          247 ---------FT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGS--DGRVAAVKLED-------G--STIDADTIVIGIGA  305 (488)
Q Consensus       247 ---------~~-~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~--~~~v~~v~l~~-------g--~~i~~D~vi~a~G~  305 (488)
                               ++ ..+.+.+.+..++.|++++.+ .+++++...  ++.+ .+.+.+       |  .++.+|+||-|.|.
T Consensus       120 ~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~-~v~~~~~~~~~~~g~~~~v~a~~VIgADG~  197 (450)
T PLN00093        120 LKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPY-VIHYTSYDSGSGAGTPKTLEVDAVIGADGA  197 (450)
T ss_pred             CCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcE-EEEEEeccccccCCCccEEEeCEEEEcCCc
Confidence                     00 012234555567789999876 476775321  2222 344321       3  47999999999998


Q ss_pred             ccCChhhhhcCC
Q 011351          306 KPTVSPFERVGL  317 (488)
Q Consensus       306 ~p~~~~~~~~gl  317 (488)
                      ..  .+.+.+++
T Consensus       198 ~S--~vrr~lg~  207 (450)
T PLN00093        198 NS--RVAKDIDA  207 (450)
T ss_pred             ch--HHHHHhCC
Confidence            65  33444443

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.77  E-value=0.018  Score=60.96  Aligned_cols=54  Identities=19%  Similarity=0.233  Sum_probs=40.5

Q ss_pred             HHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEeecCc
Q 011351          253 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAK  306 (488)
Q Consensus       253 ~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l---~~g~--~i~~D~vi~a~G~~  306 (488)
                      ..+.+.+++.||+++.++.++++..++++++.++..   .+|+  .+.++.||+|||--
T Consensus       153 ~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~  211 (598)
T PRK09078        153 HTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGY  211 (598)
T ss_pred             HHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCC
Confidence            344555667899999999999987654577887764   3564  67899999999954

>PRK08275 putative oxidoreductase; Provisional

Probab=96.77  E-value=0.021  Score=60.04  Aligned_cols=56  Identities=21%  Similarity=0.262  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEeecCcc
Q 011351          252 AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKP  307 (488)
Q Consensus       252 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l---~~g~--~i~~D~vi~a~G~~p  307 (488)
                      .+.+.+.+++.||+++.++.++++..++++++.++..   .+|+  .+.++.||+|||-..
T Consensus       140 ~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~  200 (554)
T PRK08275        140 KKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAG  200 (554)
T ss_pred             HHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence            3455555677899999999999998654567776653   3564  478999999999753

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=96.76  E-value=0.002  Score=60.11  Aligned_cols=38  Identities=26%  Similarity=0.312  Sum_probs=34.1

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY   91 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~   91 (488)
                      ++|++|||+|.+|+..|..|++.|.   +|.|||+.++...
T Consensus         1 ~fd~lIVGaGlsG~V~A~~a~~~gk---~VLIvekR~HIGG   38 (374)
T COG0562           1 MFDYLIVGAGLSGAVIAEVAAQLGK---RVLIVEKRNHIGG   38 (374)
T ss_pred             CCcEEEECCchhHHHHHHHHHHcCC---EEEEEeccccCCC
Confidence            4789999999999999999999887   8999999988653

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=96.76  E-value=0.017  Score=61.28  Aligned_cols=44  Identities=18%  Similarity=0.284  Sum_probs=34.7

Q ss_pred             cCcEEEcCCeEEEEEeCCCCcEEEEEeC---CCc--EEEcCEEEEeecC
Q 011351          262 NGVKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGA  305 (488)
Q Consensus       262 ~GV~v~~~~~v~~i~~~~~~~v~~v~l~---~g~--~i~~D~vi~a~G~  305 (488)
                      .||+++.++.++++..++++++.+|...   +|+  .+.++.||+|||-
T Consensus       146 ~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG  194 (603)
T TIGR01811       146 GLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGG  194 (603)
T ss_pred             CCcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCC
Confidence            3799999999999876555678787653   453  5789999999986

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=96.73  E-value=0.021  Score=60.65  Aligned_cols=53  Identities=25%  Similarity=0.232  Sum_probs=39.1

Q ss_pred             HHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEeecC
Q 011351          253 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGA  305 (488)
Q Consensus       253 ~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l---~~g~--~i~~D~vi~a~G~  305 (488)
                      ..+.+..++.||+++.++.++++..++++++.++..   .+|+  .+.++.||+|||-
T Consensus       170 ~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG  227 (617)
T PTZ00139        170 HTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGG  227 (617)
T ss_pred             HHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCC
Confidence            444455566789999999999977544677877754   3564  5789999999974

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=96.69  E-value=0.0062  Score=59.86  Aligned_cols=32  Identities=41%  Similarity=0.498  Sum_probs=28.2

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  239 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~  239 (488)
                      -.|+|||||..|+|.|.+.++.|.+.+++..+
T Consensus        29 ~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~   60 (679)
T KOG2311|consen   29 YDVVVIGGGHAGCEAAAAAARLGARTLLLTHN   60 (679)
T ss_pred             ccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence            46999999999999999999999888777654

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=96.67  E-value=0.002  Score=67.87  Aligned_cols=67  Identities=21%  Similarity=0.320  Sum_probs=45.0

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC-CCc--EEEcC-EEEEeec-CccCChhhhh
Q 011351          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DGS--TIDAD-TIVIGIG-AKPTVSPFER  314 (488)
Q Consensus       248 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~-~g~--~i~~D-~vi~a~G-~~p~~~~~~~  314 (488)
                      ...+...+.+..++.|++|++++.++++..+++++|++|... +|+  .+.++ .||+|+| +..|.+++++
T Consensus       212 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~N~em~~~  283 (584)
T PRK12835        212 GQSLVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFDHDMDWRKE  283 (584)
T ss_pred             cHHHHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCcccCCHHHHHH
Confidence            345556667777888999999999999887656778777553 333  36676 4777765 4445455544

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=96.62  E-value=0.0028  Score=62.21  Aligned_cols=36  Identities=25%  Similarity=0.430  Sum_probs=31.0

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      ..+++|||||||.||..||.+.++.|.   +-+|+..+-
T Consensus        26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga---~TlLlT~~l   61 (679)
T KOG2311|consen   26 TSTYDVVVIGGGHAGCEAAAAAARLGA---RTLLLTHNL   61 (679)
T ss_pred             CCcccEEEECCCccchHHHHHHHhcCC---ceEEeeccc
Confidence            457999999999999999999999986   677777654

>PRK02106 choline dehydrogenase; Validated

Probab=96.61  E-value=0.0025  Score=67.14  Aligned_cols=65  Identities=14%  Similarity=0.222  Sum_probs=47.7

Q ss_pred             HHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCC--c--EEEcCEEEEeecCccCChhhhhcCCcc
Q 011351          254 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--S--TIDADTIVIGIGAKPTVSPFERVGLNS  319 (488)
Q Consensus       254 ~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g--~--~i~~D~vi~a~G~~p~~~~~~~~gl~~  319 (488)
                      ++....+..+++++.++.|++|.-+ ++++++|+..+.  +  .+.++.||+|.|.--...+|..+|+-.
T Consensus       206 ~l~~a~~~~nl~i~~~a~V~rI~~~-~~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LLl~SGIG~  274 (560)
T PRK02106        206 YLDPALKRPNLTIVTHALTDRILFE-GKRAVGVEYERGGGRETARARREVILSAGAINSPQLLQLSGIGP  274 (560)
T ss_pred             hhccccCCCCcEEEcCCEEEEEEEe-CCeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHHhhcCCCC
Confidence            3444445678999999999999865 566778776443  2  468999999999876667777777643

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=96.61  E-value=0.0088  Score=54.67  Aligned_cols=100  Identities=18%  Similarity=0.286  Sum_probs=67.4

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccc------------------------------------------
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL------------------------------------------  246 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~------------------------------------------  246 (488)
                      +|+|||+|..|+-+|..|+..|.+|++++++..+-.|.                                          
T Consensus         3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~~   82 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWTP   82 (331)
T ss_pred             cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeeccc
Confidence            58999999999999999999999999999872211110                                          


Q ss_pred             -------------------c-CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCC-cEEEcCEEEEeecC
Q 011351          247 -------------------F-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-STIDADTIVIGIGA  305 (488)
Q Consensus       247 -------------------~-~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g-~~i~~D~vi~a~G~  305 (488)
                                         . .+.++ .+.+.|. ...+++++++|+++...++  .-.+..++| +...+|.|++++..
T Consensus        83 ~~~~~~~~~~~~~~d~~pyvg~pgms-alak~LA-tdL~V~~~~rVt~v~~~~~--~W~l~~~~g~~~~~~d~vvla~PA  158 (331)
T COG3380          83 AVWTFTGDGSPPRGDEDPYVGEPGMS-ALAKFLA-TDLTVVLETRVTEVARTDN--DWTLHTDDGTRHTQFDDVVLAIPA  158 (331)
T ss_pred             cccccccCCCCCCCCCCccccCcchH-HHHHHHh-ccchhhhhhhhhhheecCC--eeEEEecCCCcccccceEEEecCC
Confidence                               0 01112 2223332 2467888888888876522  236777665 46789999999876


Q ss_pred             ccCChhh
Q 011351          306 KPTVSPF  312 (488)
Q Consensus       306 ~p~~~~~  312 (488)
                      -....++
T Consensus       159 PQ~~~LL  165 (331)
T COG3380         159 PQTATLL  165 (331)
T ss_pred             Ccchhhc
Confidence            5444444

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=96.61  E-value=0.0025  Score=66.91  Aligned_cols=65  Identities=23%  Similarity=0.304  Sum_probs=44.5

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC-CCc--EEEc-CEEEEeecC-ccCChhhh
Q 011351          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DGS--TIDA-DTIVIGIGA-KPTVSPFE  313 (488)
Q Consensus       248 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~-~g~--~i~~-D~vi~a~G~-~p~~~~~~  313 (488)
                      +..+...+.+.+++.|+++++++.++++..+ +++|.+|... +|+  .+.+ +.||+|+|- ..|.++++
T Consensus       207 G~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~N~em~~  276 (557)
T PRK12844        207 GAALIGRMLEAALAAGVPLWTNTPLTELIVE-DGRVVGVVVVRDGREVLIRARRGVLLASGGFGHNAEMRK  276 (557)
T ss_pred             cHHHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEEEEEEEECCeEEEEEecceEEEecCCccCCHHHHH
Confidence            4566677777788889999999999998854 5777776553 343  4667 467777764 34444443

>PRK12839 hypothetical protein; Provisional

Probab=96.60  E-value=0.0026  Score=66.80  Aligned_cols=66  Identities=26%  Similarity=0.399  Sum_probs=46.6

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC--CCc-E-EEcCEEEEeecCcc-CChhhh
Q 011351          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--DGS-T-IDADTIVIGIGAKP-TVSPFE  313 (488)
Q Consensus       248 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~--~g~-~-i~~D~vi~a~G~~p-~~~~~~  313 (488)
                      +..+...+.+..++.|++++.++.++++..++++++.+|...  +|+ . +.++.||+|+|--. |.++++
T Consensus       213 g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~n~~~~~  283 (572)
T PRK12839        213 GTALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPNDVDRRK  283 (572)
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCcccCHHHHH
Confidence            445666777778889999999999999976556788887653  444 2 34588999986543 444433

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.59  E-value=0.03  Score=59.17  Aligned_cols=54  Identities=20%  Similarity=0.220  Sum_probs=39.7

Q ss_pred             HHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEeecCc
Q 011351          253 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAK  306 (488)
Q Consensus       253 ~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l---~~g~--~i~~D~vi~a~G~~  306 (488)
                      ..+.+...+.||+++.++.++++..++++++.++..   .+|+  .+.++.||+|||--
T Consensus       147 ~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~  205 (588)
T PRK08958        147 HTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGA  205 (588)
T ss_pred             HHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCc
Confidence            334444556789999999999987655678887764   3554  57899999999953

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.57  E-value=0.024  Score=59.74  Aligned_cols=52  Identities=12%  Similarity=0.106  Sum_probs=39.0

Q ss_pred             HHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC---CCc--EEEcCEEEEeecC
Q 011351          253 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGA  305 (488)
Q Consensus       253 ~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~---~g~--~i~~D~vi~a~G~  305 (488)
                      ..+.+.+++.||+++.++.++++..+ ++++.++...   +|+  .+.++.||+|||-
T Consensus       140 ~~L~~~~~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG  196 (566)
T PRK06452        140 HTLFERTSGLNVDFYNEWFSLDLVTD-NKKVVGIVAMQMKTLTPFFFKTKAVVLATGG  196 (566)
T ss_pred             HHHHHHHHhCCCEEEeCcEEEEEEEE-CCEEEEEEEEECCCCeEEEEEeCeEEECCCc
Confidence            34445556678999999999998864 6788887654   333  5789999999993

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.56  E-value=0.028  Score=60.01  Aligned_cols=49  Identities=22%  Similarity=0.354  Sum_probs=38.0

Q ss_pred             HHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC---CCc--EEEcCEEEEeecC
Q 011351          256 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGA  305 (488)
Q Consensus       256 ~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~---~g~--~i~~D~vi~a~G~  305 (488)
                      .+.+++.||++++++.++++..+ ++++.+|...   +|+  .+.++.||+|||-
T Consensus       177 ~~~~~~~gV~i~~~t~v~~Li~d-~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG  230 (640)
T PRK07573        177 SRQIAAGTVKMYTRTEMLDLVVV-DGRARGIVARNLVTGEIERHTADAVVLATGG  230 (640)
T ss_pred             HHHHHhcCCEEEeceEEEEEEEe-CCEEEEEEEEECCCCcEEEEECCEEEECCCC
Confidence            33456789999999999998754 5777777654   454  5899999999996

>PRK06175 L-aspartate oxidase; Provisional

Probab=96.55  E-value=0.028  Score=57.08  Aligned_cols=55  Identities=9%  Similarity=0.234  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHH-cCcEEEcCCeEEEEEeCCCCcEEEEE-eCCCc--EEEcCEEEEeecCc
Q 011351          251 LAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVK-LEDGS--TIDADTIVIGIGAK  306 (488)
Q Consensus       251 ~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~~~v~~v~-l~~g~--~i~~D~vi~a~G~~  306 (488)
                      +.+.+.+.+++ .||++++++.++++..+ ++++.++. ..+++  .+.++.||+|+|--
T Consensus       130 l~~~L~~~~~~~~gV~i~~~t~v~~Li~~-~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~  188 (433)
T PRK06175        130 VEKILLKKVKKRKNITIIENCYLVDIIEN-DNTCIGAICLKDNKQINIYSKVTILATGGI  188 (433)
T ss_pred             HHHHHHHHHHhcCCCEEEECcEeeeeEec-CCEEEEEEEEECCcEEEEEcCeEEEccCcc
Confidence            34445555554 59999999999998754 56666654 33454  58999999999963

>TIGR00551 nadB L-aspartate oxidase

Probab=96.52  E-value=0.024  Score=58.60  Aligned_cols=57  Identities=19%  Similarity=0.296  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHH-cCcEEEcCCeEEEEEeCCCCcEEEEEeCC-C--cEEEcCEEEEeecCccC
Q 011351          251 LAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLED-G--STIDADTIVIGIGAKPT  308 (488)
Q Consensus       251 ~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~~~v~~v~l~~-g--~~i~~D~vi~a~G~~p~  308 (488)
                      +...+.+.+++ .||+++.++.++++..+ ++.+.++...+ +  ..+.++.||+|+|-...
T Consensus       130 l~~~L~~~~~~~~gi~i~~~~~v~~l~~~-~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~  190 (488)
T TIGR00551       130 VITTLVKKALNHPNIRIIEGENALDLLIE-TGRVVGVWVWNRETVETCHADAVVLATGGAGK  190 (488)
T ss_pred             HHHHHHHHHHhcCCcEEEECeEeeeeecc-CCEEEEEEEEECCcEEEEEcCEEEECCCcccC
Confidence            34445555665 68999999999999754 56666665543 3  36899999999997543

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.50  E-value=0.033  Score=58.41  Aligned_cols=54  Identities=13%  Similarity=0.223  Sum_probs=39.2

Q ss_pred             HHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEeecCc
Q 011351          253 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAK  306 (488)
Q Consensus       253 ~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l---~~g~--~i~~D~vi~a~G~~  306 (488)
                      ..+.+.+++.||++++++.++++..++++++.++..   .+|+  .+.++.||+|||-.
T Consensus       138 ~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~  196 (543)
T PRK06263        138 MGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGA  196 (543)
T ss_pred             HHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCC
Confidence            334555666799999999999987654444766653   4564  58899999999953

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.50  E-value=0.027  Score=58.53  Aligned_cols=33  Identities=27%  Similarity=0.451  Sum_probs=30.7

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  240 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~  240 (488)
                      -.|+|||||.+|+-+|..|+++|.+|.++++.+
T Consensus         7 ~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d   39 (502)
T PRK13369          7 YDLFVIGGGINGAGIARDAAGRGLKVLLCEKDD   39 (502)
T ss_pred             cCEEEECCCHHHHHHHHHHHhCCCcEEEEECCC
Confidence            369999999999999999999999999999874

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=96.50  E-value=0.036  Score=59.16  Aligned_cols=102  Identities=22%  Similarity=0.333  Sum_probs=69.7

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCcCccc----------------------------------------
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGW-KLDTTIIFPENHLLQR----------------------------------------  245 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~-g~~v~lv~~~~~~l~~----------------------------------------  245 (488)
                      .-.|+|||+|+.|+-+|..|+++ |.+|+++++.+.....                                        
T Consensus        32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~~  111 (634)
T PRK08294         32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPDP  111 (634)
T ss_pred             CCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCCC
Confidence            45799999999999999999995 9999999877211100                                        


Q ss_pred             -------------------------ccC-HHHHHHHHHHHHHcC--cEEEcCCeEEEEEeCCCC-cEEEEEeC------C
Q 011351          246 -------------------------LFT-PSLAQRYEQLYQQNG--VKFVKGASIKNLEAGSDG-RVAAVKLE------D  290 (488)
Q Consensus       246 -------------------------~~~-~~~~~~~~~~l~~~G--V~v~~~~~v~~i~~~~~~-~v~~v~l~------~  290 (488)
                                               .+. ..+.+.+.+.+.+.|  +++.+++++++++.++++ ..+.+.+.      +
T Consensus       112 ~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~  191 (634)
T PRK08294        112 ADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHE  191 (634)
T ss_pred             ccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCC
Confidence                                     000 013344555566655  578889999999865322 21245553      3


Q ss_pred             C--cEEEcCEEEEeecCccC
Q 011351          291 G--STIDADTIVIGIGAKPT  308 (488)
Q Consensus       291 g--~~i~~D~vi~a~G~~p~  308 (488)
                      |  +++.||+||-|-|.+..
T Consensus       192 g~~~tv~A~~lVGaDGa~S~  211 (634)
T PRK08294        192 GEEETVRAKYVVGCDGARSR  211 (634)
T ss_pred             CceEEEEeCEEEECCCCchH
Confidence            5  57999999999997653

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=96.46  E-value=0.032  Score=59.10  Aligned_cols=36  Identities=31%  Similarity=0.381  Sum_probs=32.9

Q ss_pred             hcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 011351          205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  240 (488)
Q Consensus       205 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~  240 (488)
                      .+..+|+|||||+.|+-+|..|++.|.+|+++++.+
T Consensus        79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~  114 (668)
T PLN02927         79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL  114 (668)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence            456789999999999999999999999999999864

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.44  E-value=0.04  Score=58.33  Aligned_cols=52  Identities=23%  Similarity=0.261  Sum_probs=36.9

Q ss_pred             HHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEeecCcc
Q 011351          256 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKP  307 (488)
Q Consensus       256 ~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l---~~g~--~i~~D~vi~a~G~~p  307 (488)
                      .+...+.|++++.++.++++..++++++.++..   .+|+  .+.++.||+|+|-..
T Consensus       155 ~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~  211 (591)
T PRK07057        155 YQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAG  211 (591)
T ss_pred             HHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcc
Confidence            333455688888888888877554577777754   3454  578999999999643

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.44  E-value=0.033  Score=55.50  Aligned_cols=101  Identities=24%  Similarity=0.335  Sum_probs=62.2

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCC---cEEEEecCCcCccc---------------------------------------
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKL---DTTIIFPENHLLQR---------------------------------------  245 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~---~v~lv~~~~~~l~~---------------------------------------  245 (488)
                      ++|+|||+|++|+.+|..|.+.-.   .++++++.+.+-..                                       
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~   81 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ   81 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence            479999999999999999987521   37777766221100                                       


Q ss_pred             -------------------ccCHHHHHHHHHHHHHcC---cEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEee
Q 011351          246 -------------------LFTPSLAQRYEQLYQQNG---VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGI  303 (488)
Q Consensus       246 -------------------~~~~~~~~~~~~~l~~~G---V~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~  303 (488)
                                         .++..+.+.+..++++.-   |.++. ++.+.+...+++....+...+|.+..||.+|++|
T Consensus        82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~-~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlat  160 (474)
T COG4529          82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIR-EEATSVRQDTNAGGYLVTTADGPSEIADIIVLAT  160 (474)
T ss_pred             ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEe-eeeecceeccCCceEEEecCCCCeeeeeEEEEec
Confidence                               011112333333333333   33332 3344444443455556778899999999999999


Q ss_pred             cCccCC
Q 011351          304 GAKPTV  309 (488)
Q Consensus       304 G~~p~~  309 (488)
                      |..+..
T Consensus       161 gh~~~~  166 (474)
T COG4529         161 GHSAPP  166 (474)
T ss_pred             cCCCCC
Confidence            987654

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=96.44  E-value=0.045  Score=58.12  Aligned_cols=96  Identities=20%  Similarity=0.329  Sum_probs=65.7

Q ss_pred             eEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCcCcccc-----------c----C-----------------------
Q 011351          209 KVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQRL-----------F----T-----------------------  248 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~--g~~v~lv~~~~~~l~~~-----------~----~-----------------------  248 (488)
                      .|+|||+|..|+-.|..+++.  |.+|.++++.+......           +    +                       
T Consensus        13 DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~lv~~   92 (608)
T PRK06854         13 DILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDLVYD   92 (608)
T ss_pred             CEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccCCCCHHHHHH
Confidence            599999999999999999998  89999988653110000           0    0                       


Q ss_pred             ---------------------------------------HHHHHHHHHHHHHcC-cEEEcCCeEEEEEeCCCCcEEEEE-
Q 011351          249 ---------------------------------------PSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAVK-  287 (488)
Q Consensus       249 ---------------------------------------~~~~~~~~~~l~~~G-V~v~~~~~v~~i~~~~~~~v~~v~-  287 (488)
                                                             ..+...+.+.+++.+ |+++.++.+.++..+ ++++.++. 
T Consensus        93 ~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~-~g~v~Gv~~  171 (608)
T PRK06854         93 IARHVDSVVHLFEEWGLPIWKDENGKYVRRGRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDLLVD-DNRIAGAVG  171 (608)
T ss_pred             HHHhHHHHHHHHHHcCCeeeecCCCCccccCCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEEe-CCEEEEEEE
Confidence                                                   011122333444555 999999999998753 46666653 


Q ss_pred             --eCCCc--EEEcCEEEEeecC
Q 011351          288 --LEDGS--TIDADTIVIGIGA  305 (488)
Q Consensus       288 --l~~g~--~i~~D~vi~a~G~  305 (488)
                        ..+|+  .+.++.||+|+|-
T Consensus       172 ~~~~~g~~~~i~AkaVILATGG  193 (608)
T PRK06854        172 FSVRENKFYVFKAKAVIVATGG  193 (608)
T ss_pred             EEccCCcEEEEECCEEEECCCc
Confidence              24554  6899999999994

>PLN02985 squalene monooxygenase

Probab=96.44  E-value=0.04  Score=57.22  Aligned_cols=99  Identities=23%  Similarity=0.260  Sum_probs=65.5

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc------------------------------------------
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------------  245 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~------------------------------------------  245 (488)
                      ..|+|||+|..|+-+|..|++.|.+|+++++.+....+                                          
T Consensus        44 ~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~~g~~  123 (514)
T PLN02985         44 TDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYKDGKE  123 (514)
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEECCEE
Confidence            46999999999999999999999999999976210000                                          


Q ss_pred             ---cc-----------------CHHHHHHHHHHHHHc-CcEEEcCCeEEEEEeCCCCcEEEEEe--CCCcE--EEcCEEE
Q 011351          246 ---LF-----------------TPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKL--EDGST--IDADTIV  300 (488)
Q Consensus       246 ---~~-----------------~~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~~~v~~v~l--~~g~~--i~~D~vi  300 (488)
                         .+                 ...+.+.+.+.+++. ||+++.+ +++++..+ ++.+.+|.+  .+|++  +.+|+||
T Consensus       124 ~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~-~~~v~gV~~~~~dG~~~~~~AdLVV  201 (514)
T PLN02985        124 AVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEE-KGVIKGVTYKNSAGEETTALAPLTV  201 (514)
T ss_pred             EEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEc-CCEEEEEEEEcCCCCEEEEECCEEE
Confidence               00                 011233344444444 7888866 46665533 444445554  46654  5699999


Q ss_pred             EeecCccC
Q 011351          301 IGIGAKPT  308 (488)
Q Consensus       301 ~a~G~~p~  308 (488)
                      .|.|....
T Consensus       202 gADG~~S~  209 (514)
T PLN02985        202 VCDGCYSN  209 (514)
T ss_pred             ECCCCchH
Confidence            99998764

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=96.38  E-value=0.04  Score=58.63  Aligned_cols=54  Identities=20%  Similarity=0.257  Sum_probs=39.1

Q ss_pred             HHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEeecCc
Q 011351          253 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAK  306 (488)
Q Consensus       253 ~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l---~~g~--~i~~D~vi~a~G~~  306 (488)
                      ..+.+...+.||+++.++.++++..++++++.++..   .+|+  .+.++.||+|||--
T Consensus       191 ~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~  249 (635)
T PLN00128        191 HTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGY  249 (635)
T ss_pred             HHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCC
Confidence            344444556789999999999977554577777754   3454  57899999999953

>PLN03000 amine oxidase

Probab=96.35  E-value=0.005  Score=66.43  Aligned_cols=39  Identities=23%  Similarity=0.386  Sum_probs=34.7

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~   90 (488)
                      ...++|+|||||++|+.||..|.+.|+   +|+|+|+.+...
T Consensus       182 ~~~~~VvIIGaG~aGL~aA~~L~~~G~---~V~VlE~~~riG  220 (881)
T PLN03000        182 SSKSSVVIVGAGLSGLAAARQLMRFGF---KVTVLEGRKRPG  220 (881)
T ss_pred             CCCCCEEEECccHHHHHHHHHHHHCCC---cEEEEEccCcCC
Confidence            356899999999999999999999987   899999987653

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.35  E-value=0.06  Score=56.96  Aligned_cols=57  Identities=21%  Similarity=0.252  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHcCcEEEcCCeEEEEEeCCC---CcEEEEEe---CCCc--EEEcCEEEEeecCcc
Q 011351          251 LAQRYEQLYQQNGVKFVKGASIKNLEAGSD---GRVAAVKL---EDGS--TIDADTIVIGIGAKP  307 (488)
Q Consensus       251 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~---~~v~~v~l---~~g~--~i~~D~vi~a~G~~p  307 (488)
                      +...+.+.+++.||+++.++.++++..+++   +++.++..   .+|+  .+.++.||+|||-..
T Consensus       142 i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  206 (583)
T PRK08205        142 ILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG  206 (583)
T ss_pred             HHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence            344566667778999999999999875432   67777754   3554  578999999999754

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.31  E-value=0.048  Score=57.59  Aligned_cols=55  Identities=16%  Similarity=0.250  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEE---eCCCc--EEEcCEEEEeecCcc
Q 011351          252 AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK---LEDGS--TIDADTIVIGIGAKP  307 (488)
Q Consensus       252 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~---l~~g~--~i~~D~vi~a~G~~p  307 (488)
                      ...+.+.+++.||+++.++.++++..+ ++++.++.   +.+|+  .+.++.||+|||-..
T Consensus       138 ~~~L~~~~~~~gi~i~~~t~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~  197 (575)
T PRK05945        138 LHELVNNLRRYGVTIYDEWYVMRLILE-DNQAKGVVMYHIADGRLEVVRAKAVMFATGGYG  197 (575)
T ss_pred             HHHHHHHHhhCCCEEEeCcEEEEEEEE-CCEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence            344556667789999999999998753 56666654   34564  589999999999743

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.28  E-value=0.012  Score=55.49  Aligned_cols=100  Identities=27%  Similarity=0.400  Sum_probs=76.6

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecC--CcC-----------cccccCHHHHHHHHHHHHHcCcEEEcCCeEE
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE--NHL-----------LQRLFTPSLAQRYEQLYQQNGVKFVKGASIK  273 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~--~~~-----------l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~  273 (488)
                      +-.|+|||+|+.|.-.|-+.++.|.+.-++..+  ..+           .+..-++++...+++..++..|++....+.+
T Consensus       211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~qra~  290 (520)
T COG3634         211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQRAS  290 (520)
T ss_pred             CceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhhhhhhh
Confidence            447999999999999999988887664332211  011           1123467889999999999999999888888


Q ss_pred             EEEeC-CCCcEEEEEeCCCcEEEcCEEEEeecCc
Q 011351          274 NLEAG-SDGRVAAVKLEDGSTIDADTIVIGIGAK  306 (488)
Q Consensus       274 ~i~~~-~~~~v~~v~l~~g~~i~~D~vi~a~G~~  306 (488)
                      .+++. ..+....|++++|-.+++..+|++||.+
T Consensus       291 ~l~~a~~~~~l~ev~l~nGavLkaktvIlstGAr  324 (520)
T COG3634         291 KLEPAAVEGGLIEVELANGAVLKARTVILATGAR  324 (520)
T ss_pred             cceecCCCCccEEEEecCCceeccceEEEecCcc
Confidence            88763 2344568999999999999999999986

>PLN02976 amine oxidase

Probab=96.26  E-value=0.0062  Score=68.40  Aligned_cols=38  Identities=21%  Similarity=0.430  Sum_probs=33.8

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   89 (488)
                      ...++|+|||||++|+++|..|.+.|+   +|+|+|+++..
T Consensus       691 ~~~~dV~IIGAG~AGLaAA~~L~~~G~---~V~VlEa~~~v  728 (1713)
T PLN02976        691 VDRKKIIVVGAGPAGLTAARHLQRQGF---SVTVLEARSRI  728 (1713)
T ss_pred             CCCCcEEEECchHHHHHHHHHHHHCCC---cEEEEeeccCC
Confidence            345899999999999999999999987   89999998764

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.22  E-value=0.062  Score=57.30  Aligned_cols=31  Identities=29%  Similarity=0.436  Sum_probs=28.2

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  239 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~  239 (488)
                      .|+|||+|..|+-.|..+++.|.+|.+++..
T Consensus        10 DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~   40 (626)
T PRK07803         10 DVVVIGAGGAGLRAAIEARERGLRVAVVCKS   40 (626)
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCCEEEEecc
Confidence            5999999999999999999999999998765

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=96.20  E-value=0.0062  Score=63.86  Aligned_cols=66  Identities=20%  Similarity=0.242  Sum_probs=46.9

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC-CCc--EEEc-CEEEEeecCc-cCChhhhh
Q 011351          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DGS--TIDA-DTIVIGIGAK-PTVSPFER  314 (488)
Q Consensus       248 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~-~g~--~i~~-D~vi~a~G~~-p~~~~~~~  314 (488)
                      +..+...+.+.+++.||++++++.++++..+ +++|.+|... +|+  .+.+ ..||+|+|-- .|.+++++
T Consensus       216 G~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~n~em~~~  286 (564)
T PRK12845        216 GQALAAGLFAGVLRAGIPIWTETSLVRLTDD-GGRVTGAVVDHRGREVTVTARRGVVLAAGGFDHDMEMRWK  286 (564)
T ss_pred             hHHHHHHHHHHHHHCCCEEEecCEeeEEEec-CCEEEEEEEEECCcEEEEEcCCEEEEecCCccccHHHHHH
Confidence            5677788888888999999999999998753 6788877543 343  3555 5788887754 34344443

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=96.16  E-value=0.016  Score=53.38  Aligned_cols=34  Identities=41%  Similarity=0.564  Sum_probs=28.9

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCC------CcEEEEecC
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWK------LDTTIIFPE  239 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g------~~v~lv~~~  239 (488)
                      ..++++|||||.+|+-.|..|.+.+      ..||+++..
T Consensus         9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~   48 (380)
T KOG2852|consen    9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESK   48 (380)
T ss_pred             CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeec
Confidence            3488999999999999999999876      578888765

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=96.16  E-value=0.0072  Score=58.34  Aligned_cols=103  Identities=21%  Similarity=0.253  Sum_probs=67.7

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCC-CCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCH
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGM-ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP  127 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~-~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (488)
                      ..++.|.|||+|+-|-..|..|.+.-. .+.+|.-+=.+.+.      ..+  .     .|..+           .+...
T Consensus       345 aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~n------m~k--i-----LPeyl-----------s~wt~  400 (659)
T KOG1346|consen  345 AEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYN------MEK--I-----LPEYL-----------SQWTI  400 (659)
T ss_pred             hhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCC------hhh--h-----hHHHH-----------HHHHH
Confidence            346899999999999999999987532 12233322222110      000  0     01000           11234


Q ss_pred             hHHHHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCCC
Q 011351          128 EWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  175 (488)
Q Consensus       128 ~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~~  175 (488)
                      +-.++.|++++.+..|.++....+  .+.+.||.++..|.+|+|+|..|+
T Consensus       401 ekir~~GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN  450 (659)
T KOG1346|consen  401 EKIRKGGVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPN  450 (659)
T ss_pred             HHHHhcCceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCc
Confidence            455778999999888887766543  567899999999999999999876

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=96.14  E-value=0.045  Score=51.35  Aligned_cols=52  Identities=23%  Similarity=0.356  Sum_probs=37.8

Q ss_pred             CcEEEcCCeEEEEEeCCCCcEEEEEeCC--C--cEEEcCEEEEeecCccC--Chhhhhc
Q 011351          263 GVKFVKGASIKNLEAGSDGRVAAVKLED--G--STIDADTIVIGIGAKPT--VSPFERV  315 (488)
Q Consensus       263 GV~v~~~~~v~~i~~~~~~~v~~v~l~~--g--~~i~~D~vi~a~G~~p~--~~~~~~~  315 (488)
                      -+++.++++|+.+.+ ++++|.+|+..|  |  ..+.+|.||+|+|--..  .++++..
T Consensus       159 ~~ki~~nskvv~il~-n~gkVsgVeymd~sgek~~~~~~~VVlatGGf~ysd~~lLKey  216 (477)
T KOG2404|consen  159 LVKILLNSKVVDILR-NNGKVSGVEYMDASGEKSKIIGDAVVLATGGFGYSDKELLKEY  216 (477)
T ss_pred             HHhhhhcceeeeeec-CCCeEEEEEEEcCCCCccceecCceEEecCCcCcChHHHHHHh
Confidence            478999999999994 578888887754  3  35789999999875443  3455543

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=96.14  E-value=0.015  Score=57.40  Aligned_cols=70  Identities=20%  Similarity=0.400  Sum_probs=53.5

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccc------cCHH------HHHHHHHHHHHcCcEEEcCCeEEE
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL------FTPS------LAQRYEQLYQQNGVKFVKGASIKN  274 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~------~~~~------~~~~~~~~l~~~GV~v~~~~~v~~  274 (488)
                      .++++|||||..|++.|..|++.|.+|++++..+.+-.+.      |+..      +...+.+.-..-+|++++.++|++
T Consensus       124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~TyaeV~e  203 (622)
T COG1148         124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYAEVEE  203 (622)
T ss_pred             ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceeeeeeeeeee
Confidence            5689999999999999999999999999999998765431      1111      122233334456899999999999


Q ss_pred             EE
Q 011351          275 LE  276 (488)
Q Consensus       275 i~  276 (488)
                      +.
T Consensus       204 v~  205 (622)
T COG1148         204 VS  205 (622)
T ss_pred             ec
Confidence            86

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=96.12  E-value=0.071  Score=55.42  Aligned_cols=33  Identities=27%  Similarity=0.472  Sum_probs=30.5

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  240 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~  240 (488)
                      -.|+|||||.+|+-+|..++.+|.+|.++++.+
T Consensus         7 ~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d   39 (508)
T PRK12266          7 YDLLVIGGGINGAGIARDAAGRGLSVLLCEQDD   39 (508)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            469999999999999999999999999999863

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=96.11  E-value=0.011  Score=42.72  Aligned_cols=33  Identities=18%  Similarity=0.225  Sum_probs=29.6

Q ss_pred             EECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc
Q 011351          212 VVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ  244 (488)
Q Consensus       212 VvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~  244 (488)
                      |||+|.+|+-+|..|.+.+.+|+++++.+++-.
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG   33 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGG   33 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSG
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCc
Confidence            799999999999999999999999999987654

...

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=96.11  E-value=0.0075  Score=57.78  Aligned_cols=38  Identities=21%  Similarity=0.427  Sum_probs=33.5

Q ss_pred             CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      .....||+|||||.+|-+.|+.|.+.|.   +|.+||++-.
T Consensus        42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGR---rVhVIERDl~   79 (509)
T KOG1298|consen   42 NDGAADVIIVGAGVAGSALAYALAKDGR---RVHVIERDLS   79 (509)
T ss_pred             cCCcccEEEECCcchHHHHHHHHhhCCc---EEEEEecccc
Confidence            3456799999999999999999999987   8999998854

>TIGR02462 pyranose_ox pyranose oxidase

Probab=96.05  E-value=0.0068  Score=62.68  Aligned_cols=62  Identities=16%  Similarity=0.222  Sum_probs=44.9

Q ss_pred             HHHHHcCcEEEcCCeEEEEEeCCC--CcEEEEEeC---CCc--EEEcCEEEEeecCccCChhhhhcCCc
Q 011351          257 QLYQQNGVKFVKGASIKNLEAGSD--GRVAAVKLE---DGS--TIDADTIVIGIGAKPTVSPFERVGLN  318 (488)
Q Consensus       257 ~~l~~~GV~v~~~~~v~~i~~~~~--~~v~~v~l~---~g~--~i~~D~vi~a~G~~p~~~~~~~~gl~  318 (488)
                      +.++..+++++.++.|.+|..+++  +++++|...   +|+  ++.|+.||+|.|..-+..+|-.++..
T Consensus       222 ~~~~~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLLL~S~~~  290 (544)
T TIGR02462       222 DDAPSERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQILVNSGFG  290 (544)
T ss_pred             hhccCCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHHHhCCCC
Confidence            334455699999999999986644  356666443   343  58999999999988777777665543

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.05  E-value=0.077  Score=56.13  Aligned_cols=51  Identities=16%  Similarity=0.247  Sum_probs=35.8

Q ss_pred             HHHHHHH-cCcEEEcCCeEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEeecCc
Q 011351          255 YEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAK  306 (488)
Q Consensus       255 ~~~~l~~-~GV~v~~~~~v~~i~~~~~~~v~~v~l---~~g~--~i~~D~vi~a~G~~  306 (488)
                      +.+.+.+ .||+++.++.++++..+ ++++.++..   .+|+  .+.++.||+|||-.
T Consensus       143 L~~~~~~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~  199 (577)
T PRK06069        143 LYSRALRFDNIHFYDEHFVTSLIVE-NGVFKGVTAIDLKRGEFKVFQAKAGIIATGGA  199 (577)
T ss_pred             HHHHHHhcCCCEEEECCEEEEEEEE-CCEEEEEEEEEcCCCeEEEEECCcEEEcCchh
Confidence            3333434 58999999888888753 566666543   4564  58999999999965

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.04  E-value=0.07  Score=56.47  Aligned_cols=31  Identities=29%  Similarity=0.414  Sum_probs=28.1

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  239 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~  239 (488)
                      .|+|||+|..|+-.|..+++.|.+|.+++..
T Consensus         5 DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~   35 (589)
T PRK08641          5 KVIVVGGGLAGLMATIKAAEAGVHVDLFSLV   35 (589)
T ss_pred             cEEEECchHHHHHHHHHHHHcCCcEEEEEcc
Confidence            6999999999999999999999999998743

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=96.04  E-value=0.018  Score=62.80  Aligned_cols=33  Identities=21%  Similarity=0.324  Sum_probs=30.1

Q ss_pred             eEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCc
Q 011351          209 KVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENH  241 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~--g~~v~lv~~~~~  241 (488)
                      +|+|||+|+.|+-+|..|++.  |.+|+++++.+.
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~   36 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP   36 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence            689999999999999999998  889999998754

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=95.99  E-value=0.067  Score=56.50  Aligned_cols=34  Identities=38%  Similarity=0.456  Sum_probs=30.5

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  241 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~  241 (488)
                      -.|+|||+|..|+-.|..+++.|.+|.++++.+.
T Consensus        12 ~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~   45 (584)
T PRK12835         12 VDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAH   45 (584)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence            4699999999999999999999999999987643

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.96  E-value=0.032  Score=57.12  Aligned_cols=82  Identities=22%  Similarity=0.266  Sum_probs=58.7

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEE
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  285 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~  285 (488)
                      .+++++|+|+|.+|..+|..|.+.|.+|+++++...       +.+. ...+.+.+.|++++.+....+           
T Consensus         4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~-------~~~~-~~~~~l~~~~~~~~~~~~~~~-----------   64 (450)
T PRK14106          4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEE-------DQLK-EALEELGELGIELVLGEYPEE-----------   64 (450)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch-------HHHH-HHHHHHHhcCCEEEeCCcchh-----------
Confidence            468999999999999999999999999999877541       1222 222345677887765432210           


Q ss_pred             EEeCCCcEEEcCEEEEeecCccCChhh
Q 011351          286 VKLEDGSTIDADTIVIGIGAKPTVSPF  312 (488)
Q Consensus       286 v~l~~g~~i~~D~vi~a~G~~p~~~~~  312 (488)
                            ..-.+|.||.++|..++.+.+
T Consensus        65 ------~~~~~d~vv~~~g~~~~~~~~   85 (450)
T PRK14106         65 ------FLEGVDLVVVSPGVPLDSPPV   85 (450)
T ss_pred             ------HhhcCCEEEECCCCCCCCHHH
Confidence                  012479999999998887654

>PRK07395 L-aspartate oxidase; Provisional

Probab=95.96  E-value=0.046  Score=57.31  Aligned_cols=53  Identities=17%  Similarity=0.285  Sum_probs=36.6

Q ss_pred             HHHHHHHHH-cCcEEEcCCeEEEEEeCC-CCcEEEEEe-CCCc--EEEcCEEEEeecC
Q 011351          253 QRYEQLYQQ-NGVKFVKGASIKNLEAGS-DGRVAAVKL-EDGS--TIDADTIVIGIGA  305 (488)
Q Consensus       253 ~~~~~~l~~-~GV~v~~~~~v~~i~~~~-~~~v~~v~l-~~g~--~i~~D~vi~a~G~  305 (488)
                      ..+.+.+++ .||+++.++.++++..++ ++++.++.. .+|+  .+.++.||+|||-
T Consensus       138 ~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG  195 (553)
T PRK07395        138 TTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGG  195 (553)
T ss_pred             HHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCC
Confidence            334444444 489999998888887543 367777654 3454  3789999999996

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=95.86  E-value=0.002  Score=56.36  Aligned_cols=37  Identities=27%  Similarity=0.356  Sum_probs=32.3

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      ..||||||+|.|||+||+.+.+... +.+|+|||..-.
T Consensus        76 esDvviVGAGSaGLsAAY~I~~~rP-dlkvaIIE~SVa  112 (328)
T KOG2960|consen   76 ESDVVIVGAGSAGLSAAYVIAKNRP-DLKVAIIESSVA  112 (328)
T ss_pred             ccceEEECCCccccceeeeeeccCC-CceEEEEEeeec
Confidence            3599999999999999999997764 889999998754

>PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ]

Probab=95.84  E-value=0.019  Score=46.09  Aligned_cols=58  Identities=14%  Similarity=0.184  Sum_probs=44.5

Q ss_pred             CcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCCh--hhhcCCCcHHHHHHHHH
Q 011351          422 PKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDK--AKLQQASSVEEALEIAR  479 (488)
Q Consensus       422 ~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  479 (488)
                      ..+.|+.++  +++|+|+++++.++.++... ..+|+++.+++.  ..+..||+++|+++.|+
T Consensus        48 ~g~~Kli~d~~t~~IlGa~~vg~~a~e~I~~~~~ai~~~~t~~~l~~~~~~~Pt~se~~~~a~  110 (110)
T PF02852_consen   48 EGFVKLIFDKKTGRILGAQIVGPNASELINELALAIQNGLTVEDLADDIFYHPTFSEAIQEAA  110 (110)
T ss_dssp             EEEEEEEEETTTTBEEEEEEEETTHHHHHHHHHHHHHTTSBHHHHHTSBSSSTSTGHHHHHHH
T ss_pred             ceeeEEEEEeeccceeeeeeecCchHHHHHHHHHHHHcCCCHHHHhCCeeeCCChhHHHHHhC
Confidence            346677664  59999999988888776655 556788888873  33588999999999886

; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B ....

>PRK08071 L-aspartate oxidase; Provisional

Probab=95.82  E-value=0.068  Score=55.57  Aligned_cols=45  Identities=27%  Similarity=0.330  Sum_probs=33.0

Q ss_pred             cCcEEEcCCeEEEEEeCCCCcEEEEEeCC--Cc--EEEcCEEEEeecCcc
Q 011351          262 NGVKFVKGASIKNLEAGSDGRVAAVKLED--GS--TIDADTIVIGIGAKP  307 (488)
Q Consensus       262 ~GV~v~~~~~v~~i~~~~~~~v~~v~l~~--g~--~i~~D~vi~a~G~~p  307 (488)
                      .||+++.++.++++..+ ++++.++...+  |+  .+.++.||+|+|-..
T Consensus       142 ~gV~i~~~~~v~~Li~~-~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~  190 (510)
T PRK08071        142 PHVTVVEQEMVIDLIIE-NGRCIGVLTKDSEGKLKRYYADYVVLASGGCG  190 (510)
T ss_pred             cCCEEEECeEhhheeec-CCEEEEEEEEECCCcEEEEEcCeEEEecCCCc
Confidence            47888888888888643 56666665543  33  588999999998754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	488
3fg2_P	404	Crystal Structure Of Ferredoxin Reductase For The C		5e-35
3lxd_A	415	Crystal Structure Of Ferredoxin Reductase Arr From		2e-33
3lb8_A	436	Crystal Structure Of The Covalent Putidaredoxin Red		2e-33
1q1r_A	431	Crystal Structure Of Putidaredoxin Reductase From P		2e-33
3ef6_A	410	Crystal Structure Of Toluene 2,3-Dioxygenase Reduct		1e-24
2gr3_A	408	Crystal Structure Of Ferredoxin Reductase, Bpha4 (O		3e-22
1d7y_A	408	Crystal Structure Of Nadh-Dependent Ferredoxin Redu		3e-22
4fdc_B	514	Crystal Structure Of The E493v Mutant Of Human Apop		5e-18
1gv4_A	528	Murine Apoptosis-Inducing Factor (Aif) Length = 528		5e-18
3gd3_A	535	Crystal Structure Of A Naturally Folded Murine Apop		6e-18
3gd4_A	511	Crystal Structure Of The Reduced, Nad-Bound Form Of		6e-18
1m6i_A	493	Crystal Structure Of Apoptosis Inducing Factor (Aif		1e-17
3iwa_A	472	Crystal Structure Of A Fad-Dependent Pyridine Nucle		5e-17
1xhc_A	367	Nadh Oxidase /nitrite Reductase From Pyrococcus Fur		8e-12
2cdu_A	452	The Crystal Structure Of Water-Forming Nad(P)h Oxid		4e-11
3cgc_A	480	Pyridine Nucleotide Complexes With Bacillus Anthrac		5e-11
1ebd_A	455	Dihydrolipoamide Dehydrogenase Complexed With The B		3e-10
2eq7_A	455	Crystal Structure Of Lipoamide Dehydrogenase From T		1e-09
3cgb_A	480	Pyridine Nucleotide Complexes With Bacillus Anthrac		4e-09
3ntd_A	565	Structure Of The Shewanella Loihica Pv-4 Nadh-Depen		3e-08
4gcm_A	312	Crystal Structure Of A Thioredoxine Reductase (Trxb		3e-08
1nhr_A	447	An L40c Mutation Converts The Cysteine-Sulfenic Aci		5e-08
1joa_A	447	Nadh Peroxidase With Cysteine-Sulfenic Acid Length		6e-08
1nhq_A	447	Crystallographic Analyses Of Nadh Peroxidase Cys42a		6e-08
1nhs_A	447	An L40c Mutation Converts The Cysteine-Sulfenic Aci		6e-08
1nhp_A	447	Crystallographic Analyses Of Nadh Peroxidase Cys42a		6e-08
2woi_A	495	Trypanothione Reductase From Trypanosoma Brucei Len		7e-08
2wba_A	492	Properties Of Trypanothione Reductase From T. Bruce		8e-08
4dna_A	463	Crystal Structure Of Putative Glutathione Reductase		1e-07
1h6v_A	499	Mammalian Thioredoxin Reductase Length = 499		1e-07
3ean_A	499	Crystal Structure Of Recombinant Rat Selenoprotein		1e-07
2bc1_A	490	Structural Analysis Of Streptococcus Pyogenes Nadh		2e-07
2bc0_A	490	Structural Analysis Of Streptococcus Pyogenes Nadh		2e-07
2v3a_A	384	Crystal Structure Of Rubredoxin Reductase From Pseu		3e-07
1f8w_A	447	Crystal Structure Of Nadh Peroxidase Mutant: R303m		4e-07
2hqm_A	479	Crystal Structure Of Glutathione Reductase Glr1 Fro		4e-07
1zy8_A	474	The Crystal Structure Of Dihydrolipoamide Dehydroge		5e-07
2zz0_A	513	Crystal Structure Of Human Thioredoxin Reductase I		5e-07
2cfy_A	521	Crystal Structure Of Human Thioredoxin Reductase 1		5e-07
1zmc_A	474	Crystal Structure Of Human Dihydrolipoamide Dehydro		5e-07
3rnm_A	495	The Crystal Structure Of The Subunit Binding Of Hum		5e-07
2j3n_A	519	X-Ray Structure Of Human Thioredoxin Reductase 1 Le		5e-07
3qfa_A	519	Crystal Structure Of The Human Thioredoxin Reductas		5e-07
3nta_A	574	Structure Of The Shewanella Loihica Pv-4 Nadh-Depen		7e-07
3nt6_A	574	Structure Of The Shewanella Loihica Pv-4 Nadh-Depen		8e-07
3klj_A	385	Crystal Structure Of Nadh:rubredoxin Oxidoreductase		1e-06
1nda_A	491	The Structure Of Trypanosoma Cruzi Trypanothione Re		1e-06
1gxf_A	492	Crystal Structure Of Trypanosoma Cruzi Trypanothion		1e-06
1aog_A	485	Trypanosoma Cruzi Trypanothione Reductase (Oxidized		1e-06
1bzl_A	486	Crystal Structure Of Trypanosoma Cruzi Trypanothion		2e-06
1ger_A	450	The Structure Of Glutathione Reductase From Escheri		2e-06
1dxl_A	470	Dihydrolipoamide Dehydrogenase Of Glycine Decarboxy		1e-05
4eqw_A	437	Crystal Structure Of The Y361f, Y419f Mutant Of Sta		1e-05
4eqs_A	437	Crystal Structure Of The Y419f Mutant Of Staphyloco		1e-05
4eqr_A	437	Crystal Structure Of The Y361f Mutant Of Staphyloco		1e-05
4emw_A	436	Crystal Structure Of Staphylococcus Aureus Bound Wi		1e-05
4em3_A	437	Crystal Structure Of Staphylococcus Aureus Bound Wi		1e-05
1yqz_A	438	Structure Of Coenzyme A-Disulfide Reductase From St		1e-05
4eqx_A	437	Crystal Structure Of The C43s Mutant Of Staphylococ		2e-05
3dgz_A	488	Crystal Structure Of Mouse Mitochondrial Thioredoxi		2e-05
1zdl_A	517	Crystal Structure Of Mouse Thioredoxin Reductase Ty		2e-05
3icr_A	588	Crystal Structure Of Oxidized Bacillus Anthracis Co		3e-05
1ges_A	450	Anatomy Of An Engineered Nad-Binding Site Length =		8e-05
3ab1_A	360	Crystal Structure Of Ferredoxin Nadp+ Oxidoreductas		8e-05
3oc4_A	452	Crystal Structure Of A Pyridine Nucleotide-Disulfid		1e-04
3urh_A	491	Crystal Structure Of A Dihydrolipoamide Dehydrogena		1e-04
3l8k_A	466	Crystal Structure Of A Dihydrolipoyl Dehydrogenase		1e-04
1onf_A	500	Crystal Structure Of Plasmodium Falciparum Glutathi		1e-04
1lvl_A	458	The Refined Structure Of Pseudomonas Putida Lipoami		2e-04
4b1b_A	542	Crystal Structure Of Plasmodium Falciparum Oxidised		7e-04
2r9z_A	463	Glutathione Amide Reductase From Chromatium Gracile		7e-04

>pdb|3FG2|P Chain P, Crystal Structure Of Ferredoxin Reductase For The Cyp199a2 System From Rhodopseudomonas Palustris Length = 404

Iteration: 1
 Score =  145 bits (366), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 101/343 (29%), Positives = 164/343 (47%), Gaps = 27/343 (7%)
Query: 53  EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLP 112
           + V++ G   AG+     +      GR+ +++ E + PY+RP L+K YL           
Sbjct: 2   DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYL----------- 50
Query: 113 GFHTCVGSGGERQT----PE-WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLI 167
                  SGG+  +    PE +++++ IE+I  D + SID E + L+  SG  ++YG L+
Sbjct: 51  ------KSGGDPNSLMFRPEKFFQDQAIELI-SDRMVSIDREGRKLLLASGTAIEYGHLV 103
Query: 168 VATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAV 227
           +ATG   +R  +     LP V Y+R + +++ L   +   K        +IG+E AA A 
Sbjct: 104 LATGAR-NRMLDVPNASLPDVLYLRTLDESEVLRQRMPDKKHVVVIGAGFIGLEFAATAR 162
Query: 228 GWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK 287
              L+  ++     ++ R+ TP ++  +   +   G++   G     + A  D RV  V 
Sbjct: 163 AKGLEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAAEGD-RVTGVV 221
Query: 288 LEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFP 347
           L DG+T+  D +V+G+G  P V          +  GI VD Q  T  P I AIGD A F 
Sbjct: 222 LSDGNTLPCDLVVVGVGVIPNVE-IAAAAGLPTAAGIIVDQQLLTSDPHISAIGDCALFE 280
Query: 348 LKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYS 390
              +  T RVE V +A   A+ C+ A L+     YD  P+F+S
Sbjct: 281 SVRFGETMRVESVQNATDQAR-CVAARLTGDAKPYDGYPWFWS 322

>pdb|3LXD|A Chain A, Crystal Structure Of Ferredoxin Reductase Arr From Novosphingobium Aromaticivorans Length = 415

Iteration: 1
 Score =  140 bits (353), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 105/356 (29%), Positives = 170/356 (47%), Gaps = 27/356 (7%)
Query: 77  DGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFH-TCVGSGGERQTPEWYKEKGI 135
           +GR+ ++ +E   PYERP L+K YL       AR   F   C+      +  +++++K +
Sbjct: 34  EGRVLVIGREPEIPYERPPLSKEYL-------AREKTFERICI------RPAQFWEDKAV 80
Query: 136 EMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVA 195
           EM     V S+D    T+    G  ++YG LI ATG    R    +G  L GVH +R   
Sbjct: 81  EMKLGAEVVSLDPAAHTVKLGDGSAIEYGKLIWATGGDPRRL-SCVGADLAGVHAVRTKE 139
Query: 196 DADALISSLEK-AKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR 254
           DAD L++ L+  AK        YIG+E AA    + ++ T++     +L R+   +L++ 
Sbjct: 140 DADRLMAELDAGAKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARVAGEALSEF 199
Query: 255 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER 314
           Y+  ++ +GV    GA++  +E G   +V  V+++DGS I AD +++GIG  P V     
Sbjct: 200 YQAEHRAHGVDLRTGAAMDCIE-GDGTKVTGVRMQDGSVIPADIVIVGIGIVPCVGALIS 258
Query: 315 VGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA-RVEHVDHARQSAQHCIKA 373
            G +    G+ VD   RT +  ++AIGD AA      D    R+E V +A   A    K 
Sbjct: 259 AGASGG-NGVDVDEFCRTSLTDVYAIGDCAAHANDFADGAVIRLESVQNANDMATAAAKD 317
Query: 374 LLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWI 429
           +  A    Y   P+F+S  ++ +        Q  G + G    +   DP   +F +
Sbjct: 318 ICGAPV-PYKATPWFWSNQYDLK-------LQTVGLSTGHDNAVLRGDPATRSFSV 365

>pdb|3LB8|A Chain A, Crystal Structure Of The Covalent Putidaredoxin Reductase- Putidaredoxin Complex Length = 436

Iteration: 1
 Score =  140 bits (352), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/349 (29%), Positives = 164/349 (46%), Gaps = 18/349 (5%)
Query: 49  NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKP 108
           N N   VIVG G A    A      G  +G + +V      P+  P L+K YL       
Sbjct: 1   NANDNVVIVGTGLAGVEVAFGLRASGW-EGNIRLVGDATVIPHHLPPLSKAYL----AGK 55
Query: 109 ARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIV 168
           A     +         +TP+ Y  + I+++    VT+I+ ++Q +I + G+ L Y  L++
Sbjct: 56  ATAESLYL--------RTPDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVL 107
Query: 169 ATGCTASRFPEKIG--GYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAA 226
           ATG      P   G  G      Y+R + DA+ +   L    +       YIG+EVAA A
Sbjct: 108 ATGGRPRPLPVASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATA 167
Query: 227 VGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD-GRVAA 285
           +   +  T++     +L+R+  P ++  YE L+++ GV    G  +   E  +D  +V A
Sbjct: 168 IKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTA 227
Query: 286 VKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 345
           V  EDG+ + AD ++ GIG  P        GL     GI ++   +T  P I A+GD A 
Sbjct: 228 VLCEDGTRLPADLVIAGIGLIPNCELASAAGLQVD-NGIVINEHMQTSDPLIMAVGDCAR 286
Query: 346 FPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFE 394
           F  ++YDR  R+E V +A + A+  I A+L  +    +  P+F+S  +E
Sbjct: 287 FHSQLYDRWVRIESVPNALEQARK-IAAILCGKVPRDEAAPWFWSDQYE 334

>pdb|1Q1R|A Chain A, Crystal Structure Of Putidaredoxin Reductase From Pseudomonas Putida Length = 431

Iteration: 1
 Score =  139 bits (351), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/349 (29%), Positives = 164/349 (46%), Gaps = 18/349 (5%)
Query: 49  NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKP 108
           N N   VIVG G A    A      G  +G + +V      P+  P L+K YL       
Sbjct: 2   NANDNVVIVGTGLAGVEVAFGLRASGW-EGNIRLVGDATVIPHHLPPLSKAYL----AGK 56
Query: 109 ARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIV 168
           A     +         +TP+ Y  + I+++    VT+I+ ++Q +I + G+ L Y  L++
Sbjct: 57  ATAESLYL--------RTPDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVL 108
Query: 169 ATGCTASRFPEKIG--GYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAA 226
           ATG      P   G  G      Y+R + DA+ +   L    +       YIG+EVAA A
Sbjct: 109 ATGGRPRPLPVASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATA 168
Query: 227 VGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD-GRVAA 285
           +   +  T++     +L+R+  P ++  YE L+++ GV    G  +   E  +D  +V A
Sbjct: 169 IKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTA 228
Query: 286 VKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 345
           V  EDG+ + AD ++ GIG  P        GL     GI ++   +T  P I A+GD A 
Sbjct: 229 VLCEDGTRLPADLVIAGIGLIPNCELASAAGLQVD-NGIVINEHMQTSDPLIMAVGDCAR 287
Query: 346 FPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFE 394
           F  ++YDR  R+E V +A + A+  I A+L  +    +  P+F+S  +E
Sbjct: 288 FHSQLYDRWVRIESVPNALEQARK-IAAILCGKVPRDEAAPWFWSDQYE 335

>pdb|3EF6|A Chain A, Crystal Structure Of Toluene 2,3-Dioxygenase Reductase Length = 410

Iteration: 1
 Score =  110 bits (276), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/298 (28%), Positives = 135/298 (45%), Gaps = 18/298 (6%)
Query: 56  IVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFH 115
           I+G G      A+     G  +GR+ ++  E + PY+RP+L+K  L    ++P  L    
Sbjct: 7   IIGNGVGGFTTAQALRAEGF-EGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPIL---- 61
Query: 116 TCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS 175
                       +WY E  I+M+    VT++D++ +T+  + G  L   ++++ATG  A 
Sbjct: 62  ---------AEADWYGEARIDMLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSRA- 111
Query: 176 RFPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTI 235
           R     G  LPGV  +R   D   L  S   A +        IG EVA  A    L  TI
Sbjct: 112 RTMALPGSQLPGVVTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVATTARKLGLSVTI 171
Query: 236 IFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTID 295
           +   + LL R+    +      L  + GV+   G  +       +G++  V   DG +  
Sbjct: 172 LEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSG--EGQLEQVMASDGRSFV 229
Query: 296 ADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR 353
           AD+ +I +GA+P      + GL    G I VD    T   G+FA+GDVA++PL+   R
Sbjct: 230 ADSALICVGAEPADQLARQAGLACDRGVI-VDHCGATLAKGVFAVGDVASWPLRAGGR 286

>pdb|2GR3|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized Form) Length = 408

Iteration: 1
 Score =  103 bits (256), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 144/332 (43%), Gaps = 29/332 (8%)
Query: 63  AGYAARTFV---EHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVG 119
           AG A+ +FV         G + +V  EA  PY+RP L+K ++   D +  RL     C  
Sbjct: 15  AGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRL----DC-- 68
Query: 120 SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPE 179
               ++ PE      +E +      S D +  T+  + G+ L YG+L++ATG      P 
Sbjct: 69  ----KRAPE------VEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRALPT 118
Query: 180 KIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPE 239
             G  +P VH +R + DA  + + L    +        IG+E+AA A    +  +++  +
Sbjct: 119 LQGATMP-VHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQ 177
Query: 240 NHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV-AAVKLEDGSTIDADT 298
             L+ R    +LA    + +   GV           E    G V   V L+DG+ I AD 
Sbjct: 178 PRLMSRAAPATLADFVARYHAAQGVDL-------RFERSVTGSVDGVVLLDDGTRIAADM 230
Query: 299 IVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVE 358
           +V+GIG     +     GL     GI VD   RT  P ++A+GDV      +  R  R+E
Sbjct: 231 VVVGIGVLANDALARAAGLACD-DGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIE 289
Query: 359 HVDHARQSAQHCIKALLSAQTHTYDYLPYFYS 390
              +A+       + L+      Y  LP+++S
Sbjct: 290 TWSNAQNQGIAVARHLVDPTAPGYAELPWYFS 321

>pdb|1D7Y|A Chain A, Crystal Structure Of Nadh-Dependent Ferredoxin Reductase, Bpha4 Length = 408

Iteration: 1
 Score =  103 bits (256), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 144/332 (43%), Gaps = 29/332 (8%)
Query: 63  AGYAARTFV---EHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVG 119
           AG A+ +FV         G + +V  EA  PY+RP L+K ++   D +  RL     C  
Sbjct: 15  AGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRL----DC-- 68
Query: 120 SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPE 179
               ++ PE      +E +      S D +  T+  + G+ L YG+L++ATG      P 
Sbjct: 69  ----KRAPE------VEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRALPT 118
Query: 180 KIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPE 239
             G  +P VH +R + DA  + + L    +        IG+E+AA A    +  +++  +
Sbjct: 119 LQGATMP-VHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQ 177
Query: 240 NHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV-AAVKLEDGSTIDADT 298
             L+ R    +LA    + +   GV           E    G V   V L+DG+ I AD 
Sbjct: 178 PRLMSRAAPATLADFVARYHAAQGVDL-------RFERSVTGSVDGVVLLDDGTRIAADM 230
Query: 299 IVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVE 358
           +V+GIG     +     GL     GI VD   RT  P ++A+GDV      +  R  R+E
Sbjct: 231 VVVGIGVLANDALARAAGLACD-DGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIE 289
Query: 359 HVDHARQSAQHCIKALLSAQTHTYDYLPYFYS 390
              +A+       + L+      Y  LP+++S
Sbjct: 290 TWSNAQNQGIAVARHLVDPTAPGYAELPWYWS 321

>pdb|4FDC|B Chain B, Crystal Structure Of The E493v Mutant Of Human Apoptosis Inducing Factor (Aif) Length = 514

Iteration: 1
 Score = 89.0 bits (219), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 163/372 (43%), Gaps = 49/372 (13%)
Query: 79  RLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGER----QTPEWY---- 130
           R+ IVS++   PY RP L+K   F  D    +   F     +G ER    Q P +Y    
Sbjct: 56  RVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQW--NGKERSIYFQPPSFYVSAQ 113
Query: 131 -----KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGG 183
                +  G+ ++    V  +D+    +  N G  + Y   ++ATG T       ++ G 
Sbjct: 114 DLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGA 173
Query: 184 YLPG-VHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWK---LDTTII--F 237
            +       R + D  +L     + K        ++G E+ A A+G K   L T +I  F
Sbjct: 174 EVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSEL-ACALGRKARALGTEVIQLF 232
Query: 238 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 297
           PE   + ++    L+    +  ++ GVK +  A ++++   S G++  +KL+DG  ++ D
Sbjct: 233 PEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGV-SSGKL-LIKLKDGRKVETD 290
Query: 298 TIVIGIGAKPTVSPFERVGL--NSSVGGIQVDGQFRTRMPGIFAIGDVAAF-PLKMYDRT 354
            IV  +G +P V   +  GL  +S  GG +V+ + + R   I+  GD A F  +K+  R 
Sbjct: 291 HIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQARS-NIWVAGDAACFYDIKLGRR- 348
Query: 355 ARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGET 414
            RVEH DHA       +   L+ +  T    PY++  +F          W   G +VG  
Sbjct: 349 -RVEHHDHA------VVSGRLAGENMTGAAKPYWHQSMF----------WSDLGPDVG-Y 390
Query: 415 IEIGNFDPKIAT 426
           + IG  D  + T
Sbjct: 391 VAIGLVDSSLPT 402

>pdb|1GV4|A Chain A, Murine Apoptosis-Inducing Factor (Aif) Length = 528

Iteration: 1
 Score = 89.0 bits (219), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 154/358 (43%), Gaps = 48/358 (13%)
Query: 79  RLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGER----QTPEWY---- 130
           R+ IVS++   PY RP L+K   F  D    +   F     +G ER    Q P +Y    
Sbjct: 75  RVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLQFRQW--NGKERSIYFQPPSFYVSAQ 132
Query: 131 -----KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGG 183
                +  G+ ++    V  +D+    +  N G  + +   ++ATG T       ++ G 
Sbjct: 133 DLPNIENGGVAVLTGKKVVHLDVRGNMVKLNDGSQITFEKCLIATGGTPRSLSAIDRAGA 192
Query: 184 YLPG-VHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWK-----LDTTIIF 237
            +       R + D  AL     + K        ++G E+ A A+G K     ++   +F
Sbjct: 193 EVKSRTTLFRKIGDFRALEKISREVKSITVIGGGFLGSEL-ACALGRKSQASGIEVIQLF 251
Query: 238 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 297
           PE   + ++    L+    +  ++ GVK +  A ++++  G  G    +KL+DG  ++ D
Sbjct: 252 PEKGNMGKILPQYLSNWTMEKVKREGVKVMPNAIVQSV--GVSGGRLLIKLKDGRKVETD 309
Query: 298 TIVIGIGAKPTVSPFERVGL--NSSVGGIQVDGQFRTRMPGIFAIGDVAAF-PLKMYDRT 354
            IV  +G +P V   +  GL  +S  GG +V+ + + R   I+  GD A F  +K+  R 
Sbjct: 310 HIVTAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQAR-SNIWVAGDAACFYDIKLGRR- 367
Query: 355 ARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG 412
            RVEH DHA       +   L+ +  T    PY++  +F          W   G +VG
Sbjct: 368 -RVEHHDHA------VVSGRLAGENMTGAAKPYWHQSMF----------WSDLGPDVG 408

>pdb|3GD3|A Chain A, Crystal Structure Of A Naturally Folded Murine Apoptosis Inducing Factor Length = 535

Iteration: 1
 Score = 89.0 bits (219), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 154/358 (43%), Gaps = 48/358 (13%)
Query: 79  RLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGER----QTPEWY---- 130
           R+ IVS++   PY RP L+K   F  D    +   F     +G ER    Q P +Y    
Sbjct: 80  RVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLQFRQW--NGKERSIYFQPPSFYVSAQ 137
Query: 131 -----KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGG 183
                +  G+ ++    V  +D+    +  N G  + +   ++ATG T       ++ G 
Sbjct: 138 DLPNIENGGVAVLTGKKVVHLDVRGNMVKLNDGSQITFEKCLIATGGTPRSLSAIDRAGA 197
Query: 184 YLPG-VHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWK-----LDTTIIF 237
            +       R + D  AL     + K        ++G E+ A A+G K     ++   +F
Sbjct: 198 EVKSRTTLFRKIGDFRALEKISREVKSITVIGGGFLGSEL-ACALGRKSQASGIEVIQLF 256
Query: 238 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 297
           PE   + ++    L+    +  ++ GVK +  A ++++  G  G    +KL+DG  ++ D
Sbjct: 257 PEKGNMGKILPQYLSNWTMEKVKREGVKVMPNAIVQSV--GVSGGRLLIKLKDGRKVETD 314
Query: 298 TIVIGIGAKPTVSPFERVGL--NSSVGGIQVDGQFRTRMPGIFAIGDVAAF-PLKMYDRT 354
            IV  +G +P V   +  GL  +S  GG +V+ + + R   I+  GD A F  +K+  R 
Sbjct: 315 HIVTAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQAR-SNIWVAGDAACFYDIKLGRR- 372
Query: 355 ARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG 412
            RVEH DHA       +   L+ +  T    PY++  +F          W   G +VG
Sbjct: 373 -RVEHHDHA------VVSGRLAGENMTGAAKPYWHQSMF----------WSDLGPDVG 413

>pdb|3GD4|A Chain A, Crystal Structure Of The Reduced, Nad-Bound Form Of Murine Apoptosis Inducing Factor Length = 511

Iteration: 1
 Score = 88.6 bits (218), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 154/358 (43%), Gaps = 48/358 (13%)
Query: 79  RLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGER----QTPEWY---- 130
           R+ IVS++   PY RP L+K   F  D    +   F     +G ER    Q P +Y    
Sbjct: 56  RVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLQFRQW--NGKERSIYFQPPSFYVSAQ 113
Query: 131 -----KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGG 183
                +  G+ ++    V  +D+    +  N G  + +   ++ATG T       ++ G 
Sbjct: 114 DLPNIENGGVAVLTGKKVVHLDVRGNMVKLNDGSQITFEKCLIATGGTPRSLSAIDRAGA 173
Query: 184 YLPG-VHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWK-----LDTTIIF 237
            +       R + D  AL     + K        ++G E+ A A+G K     ++   +F
Sbjct: 174 EVKSRTTLFRKIGDFRALEKISREVKSITVIGGGFLGSEL-ACALGRKSQASGIEVIQLF 232
Query: 238 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 297
           PE   + ++    L+    +  ++ GVK +  A ++++  G  G    +KL+DG  ++ D
Sbjct: 233 PEKGNMGKILPQYLSNWTMEKVKREGVKVMPNAIVQSV--GVSGGRLLIKLKDGRKVETD 290
Query: 298 TIVIGIGAKPTVSPFERVGL--NSSVGGIQVDGQFRTRMPGIFAIGDVAAF-PLKMYDRT 354
            IV  +G +P V   +  GL  +S  GG +V+ + + R   I+  GD A F  +K+  R 
Sbjct: 291 HIVTAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQAR-SNIWVAGDAACFYDIKLGRR- 348
Query: 355 ARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG 412
            RVEH DHA       +   L+ +  T    PY++  +F          W   G +VG
Sbjct: 349 -RVEHHDHA------VVSGRLAGENMTGAAKPYWHQSMF----------WSDLGPDVG 389

>pdb|1M6I|A Chain A, Crystal Structure Of Apoptosis Inducing Factor (Aif) Length = 493

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 93/358 (25%), Positives = 157/358 (43%), Gaps = 48/358 (13%)
Query: 79  RLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGER----QTPEWY---- 130
           R+ IVS++   PY RP L+K   F  D    +   F     +G ER    Q P +Y    
Sbjct: 38  RVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQW--NGKERSIYFQPPSFYVSAQ 95
Query: 131 -----KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGG 183
                +  G+ ++    V  +D+    +  N G  + Y   ++ATG T       ++ G 
Sbjct: 96  DLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGA 155
Query: 184 YLPG-VHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWK---LDTTII--F 237
            +       R + D  +L     + K        ++G E+ A A+G K   L T +I  F
Sbjct: 156 EVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSEL-ACALGRKARALGTEVIQLF 214
Query: 238 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 297
           PE   + ++    L+    +  ++ GVK +  A ++++   S G++  +KL+DG  ++ D
Sbjct: 215 PEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGV-SSGKL-LIKLKDGRKVETD 272
Query: 298 TIVIGIGAKPTVSPFERVGL--NSSVGGIQVDGQFRTRMPGIFAIGDVAAF-PLKMYDRT 354
            IV  +G +P V   +  GL  +S  GG +V+ + + R   I+  GD A F  +K+  R 
Sbjct: 273 HIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQAR-SNIWVAGDAACFYDIKLGRR- 330
Query: 355 ARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG 412
            RVEH DHA       +   L+ +  T    PY++  +F          W   G +VG
Sbjct: 331 -RVEHHDHA------VVSGRLAGENMTGAAKPYWHQSMF----------WSDLGPDVG 371

>pdb|3IWA|A Chain A, Crystal Structure Of A Fad-Dependent Pyridine Nucleotide-Disulphide Oxidoreductase From Desulfovibrio Vulgaris Length = 472

Iteration: 1
 Score = 85.9 bits (211), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 115/233 (49%), Gaps = 13/233 (5%)
Query: 125 QTPEWYK-EKGIEMIYQDPVTSID-----IEKQTLITNSGKLLKYGSLIVATGCTASRFP 178
           + PE+++  K +E + +    +ID     +E + L T   + LKY  L++A G  A+R P
Sbjct: 70  RDPEFFRINKDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKANRPP 129
Query: 179 EKIGGYLPGVHYIRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAA-AVGWKLDTTI 235
            + G  L GV  + ++ +A+ +  ++   +  K       +IG+E+A + A  W +DTT+
Sbjct: 130 VE-GMDLAGVTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTV 188
Query: 236 IFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTID 295
           +   + ++    + SL+Q      ++N V    G  +  LE G +G+VA V + D  T+D
Sbjct: 189 VELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLE-GENGKVARV-ITDKRTLD 246
Query: 296 ADTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFP 347
           AD +++  G  P        GL     G I VD + RT  P IFA GD    P
Sbjct: 247 ADLVILAAGVSPNTQLARDAGLELDPRGAIIVDTRMRTSDPDIFAGGDCVTIP 299

>pdb|1XHC|A Chain A, Nadh Oxidase /nitrite Reductase From Pyrococcus Furiosus Pfu-1140779- 001 Length = 367

Iteration: 1
 Score = 68.6 bits (166), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 137/315 (43%), Gaps = 37/315 (11%)
Query: 128 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG 187
           +WY+++GIE+   +    ID  ++ +IT  G+ + Y +L++ATG  A R P+     + G
Sbjct: 68  DWYRKRGIEIRLAEEAKLIDRGRKVVITEKGE-VPYDTLVLATGARA-REPQ-----IKG 120
Query: 188 VHY---IRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQ 244
             Y   +R + DAD +  S+E + +       +IG+E+A           +I      L 
Sbjct: 121 KEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG 180
Query: 245 RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 304
                 L+   + + ++ GVKF   + +  LEA  +G      L +   I+    +  IG
Sbjct: 181 --LDEELSNMIKDMLEETGVKFFLNSEL--LEANEEG-----VLTNSGFIEGKVKICAIG 231
Query: 305 AKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHAR 364
             P V    R G+++   GI +D  FRT    ++AIGD A +       +  +     A 
Sbjct: 232 IVPNVDLARRSGIHTG-RGILIDDNFRTSAKDVYAIGDCAEY-------SGIIAGTAKAA 283
Query: 365 QSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKI 424
                 +  +L  +   Y++   F S VF++     K+     G+  GE    G +    
Sbjct: 284 MEQARVLADILKGEPRRYNF--KFRSTVFKF----GKLQIAIIGNTKGE----GKWIEDN 333
Query: 425 ATFWIDSGKLKGVLV 439
              + ++GK+ G +V
Sbjct: 334 TKVFYENGKIIGAVV 348

>pdb|2CDU|A Chain A, The Crystal Structure Of Water-Forming Nad(P)h Oxidase From Lactobacillus Sanfranciscensis Length = 452

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 95/231 (41%), Gaps = 20/231 (8%)
Query: 126 TPEWYKEKGIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASRFPEK 180
           +PE     G  +  +  VT++D E +T     LITN  K   Y  LI+ TG   +  P  
Sbjct: 64  SPEELSNLGANVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTVPP-- 121
Query: 181 IGGYLPG-----VHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTI 235
               +PG     V+  ++  DA  L     KAK        YIG E+A A      +  +
Sbjct: 122 ----IPGIDSSRVYLCKNYNDAKKLFEEAPKAKTITIIGSGYIGAELAEAYSNQNYNVNL 177
Query: 236 IFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTID 295
           I     +L + F         + Y+ +GV  V G+ +   E   D  +   K  DG  I 
Sbjct: 178 IDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFEEVDDEIIT--KTLDGKEIK 235
Query: 296 ADTIVIGIGAKPTVSPFE-RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 345
           +D  ++ IG +P     + +V +  + G I  D    +    IFA GD AA
Sbjct: 236 SDIAILCIGFRPNTELLKGKVAMLDN-GAIITDEYMHSSNRDIFAAGDSAA 285

>pdb|3CGC|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis Coenzyme A- Disulfide Reductase: A Structural Analysis Of Dual Nad(p)h Specificity Length = 480

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 72/305 (23%), Positives = 131/305 (42%), Gaps = 35/305 (11%)
Query: 54  FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE-----AYAPYERPALTKGYLFPLDKKP 108
           +VI+GG  A   AA   V +   D    +V+ E     +YA    P +  G +   +K  
Sbjct: 39  YVIIGGDAAGMSAAMQIVRN---DENANVVTLEKGEIYSYAQCGLPYVISGAIASTEKLI 95
Query: 109 ARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKL-----LKY 163
           AR                  +  + GI+   +  VT +D EK+ +     K        Y
Sbjct: 96  AR--------------NVKTFRDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSY 141
Query: 164 GSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE--KAKKXXXXXXXYIGME 221
             L++ATG      PE  G  L GVH ++ + DA+ ++ +LE  K +         IG+E
Sbjct: 142 DRLLIATGVRPV-MPEWEGRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLE 200
Query: 222 VAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG 281
           +A   V       +I   +H +  ++   +A+   +   ++ ++ +   ++K  +     
Sbjct: 201 MAETFVELGKKVRMIERNDH-IGTIYDGDMAEYIYKEADKHHIEILTNENVKAFKGNE-- 257
Query: 282 RVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAI 340
           RV AV+ + G T  AD +++ +G KP     E   + ++  G I+V+   +T +  ++A 
Sbjct: 258 RVEAVETDKG-TYKADLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYMQTNVQDVYAA 316
Query: 341 GDVAA 345
           GD A 
Sbjct: 317 GDCAT 321

>pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding Domain Of The Dihydrolipoamide Acetylase Length = 455

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 91/196 (46%), Gaps = 13/196 (6%)
Query: 156 NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXX 215
           +S +   + + I+ATG   SR  E     LP   +   + D+   ++  E  K       
Sbjct: 127 DSAQTYTFKNAIIATG---SRPIE-----LPNFKFSNRILDSTGALNLGEVPKSLVVIGG 178
Query: 216 XYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNL 275
            YIG+E+  A   +    TI+     +L   F   +A   ++  ++ GV+ V  A  K  
Sbjct: 179 GYIGIELGTAYANFGTKVTILEGAGEILSG-FEKQMAAIIKKRLKKKGVEVVTNALAKGA 237
Query: 276 EAGSDGRVAAVKLE-DGSTIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQVDGQFR 331
           E   DG     +   +  TIDAD +++ +G +P       E++G+  ++ G I+VD Q R
Sbjct: 238 EEREDGVTVTYEANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCR 297
Query: 332 TRMPGIFAIGDVAAFP 347
           T +P IFAIGD+   P
Sbjct: 298 TSVPNIFAIGDIVPGP 313

>pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus Thermophilus Hb8 With Psbdo Length = 455

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 110/224 (49%), Gaps = 27/224 (12%)
Query: 149 EKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAK 208
           E++ L+  +G+ L+   +++ATG +A   P         V Y R V   +AL S  E  K
Sbjct: 116 ERKVLVEETGEELEARYILIATG-SAPLIPP-----WAQVDYERVVTSTEAL-SFPEVPK 168
Query: 209 KXXXXXXXYIGMEVAAAAVGW-KLDTTIIFPENHLLQRLFTPSL----AQRYEQLYQQNG 263
           +        IG+E+    V W +L   +I  E   + R+  P++    ++  E+++++ G
Sbjct: 169 RLIVVGGGVIGLELG---VVWHRLGAEVIVLE--YMDRIL-PTMDLEVSRAAERVFKKQG 222
Query: 264 VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS--PFERVGLNS-S 320
           +    G  +  +   + G  A V+LE G  ++AD +++ +G +P       E  GL++  
Sbjct: 223 LTIRTGVRVTAVVPEAKG--ARVELEGGEVLEADRVLVAVGRRPYTEGLSLENAGLSTDE 280
Query: 321 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRT----ARVEHV 360
            G I VD   RTR+P I+AIGDV   P+  +  +    A VEH+
Sbjct: 281 RGRIPVDEHLRTRVPHIYAIGDVVRGPMLAHKASEEGIAAVEHM 324

>pdb|3CGB|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis Coenzyme A- Disulfide Reductase: A Structural Analysis Of Dual Nad(P)h Specificity Length = 480

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 102/230 (44%), Gaps = 13/230 (5%)
Query: 124 RQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKL-----LKYGSLIVATGCTASRFP 178
           R    +  + GI+   +  VT +D EK+ +     K        Y  L++ATG      P
Sbjct: 97  RNVKTFRDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPV-XP 155
Query: 179 EKIGGYLPGVHYIRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 236
           E  G  L GVH ++ + DA+ ++ +LE  K +         IG+E A   V        I
Sbjct: 156 EWEGRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEXAETFVELGKKVRXI 215
Query: 237 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 296
              +H +  ++    A+   +   ++ ++ +   ++K  +     RV AV+ + G T  A
Sbjct: 216 ERNDH-IGTIYDGDXAEYIYKEADKHHIEILTNENVKAFKGNE--RVEAVETDKG-TYKA 271
Query: 297 DTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAA 345
           D +++ +G KP     E   + ++  G I+V+   +T +  ++A GD A 
Sbjct: 272 DLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYXQTNVQDVYAAGDCAT 321

>pdb|3NTD|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent Persulfide Reductase C531s Mutant Length = 565

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 107/247 (43%), Gaps = 34/247 (13%)
Query: 125 QTPEWYKEK-GIEMIYQDPVTSID-----IEKQTLITNSGKLLKYGSLIVATGCTASRFP 178
           QTPE +K +  +E+  +  V +ID     +  + L+  S     Y +L+++ G  A   P
Sbjct: 62  QTPESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGA-APIVP 120
Query: 179 EKIGGYLPGVHYIRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 236
              G   P  H +R++ D D ++ +++    +        +IG+E+  +     + TT++
Sbjct: 121 PIPGVDNPLTHSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGIKTTLL 180
Query: 237 FPENHLLQRLFTP---SLAQRYEQLYQQNGVKFVKGASIKNLE-----------AGSDGR 282
                L  ++ TP    +A    Q  +  GV    G ++  +            AG D  
Sbjct: 181 ----ELADQVMTPVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTA 236
Query: 283 VAAVK------LEDGSTIDADTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMP 335
              +K      L +G  ++ D +++ IG +P        GL    +GGI+V+   +T  P
Sbjct: 237 HQHIKGHLSLTLSNGELLETDLLIMAIGVRPETQLARDAGLAIGELGGIKVNAMMQTSDP 296
Query: 336 GIFAIGD 342
            I+A+GD
Sbjct: 297 AIYAVGD 303

>pdb|4GCM|A Chain A, Crystal Structure Of A Thioredoxine Reductase (Trxb) From Staphylococcus Aureus Subsp. Aureus Mu50 At 1.80 A Resolution Length = 312

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 106/242 (43%), Gaps = 22/242 (9%)
Query: 110 RLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVA 169
             PGF    G     +  E  K+ G    Y D  +  D  +  +I    K L   ++I+A
Sbjct: 52  NFPGFEXITGPDLSTKXFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIA 111
Query: 170 TGCTASRFPEKIGGYLPGVHYI--RDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAV 227
           TG       +KIG  +PG   +  R V+       +  K K+          +E      
Sbjct: 112 TGAEY----KKIG--VPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLT 165
Query: 228 GWKLDTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV 286
            +    TI+   + L  QR+         ++ ++ + + F+   ++K++    DG+V +V
Sbjct: 166 KFADKVTIVHRRDELRAQRILQ-------DRAFKNDKIDFIWSHTLKSINE-KDGKVGSV 217
Query: 287 KL---EDGS--TIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIG 341
            L   +DGS  T +AD + I IG KP  +PF+ +G+ + VG I       T +PGIFA G
Sbjct: 218 TLTSTKDGSEETHEADGVFIYIGXKPLTAPFKDLGITNDVGYIVTKDDXTTSVPGIFAAG 277
Query: 342 DV 343
           DV
Sbjct: 278 DV 279

>pdb|1NHR|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox Centre In Enterococcal Nadh Peroxidase To A Disulfide Length = 447

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 69/162 (42%), Gaps = 11/162 (6%)
Query: 217 YIGMEVAAA--AVGWKLDTTIIF--PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI 272
           YIG+E A A    G K+    I   P    L + FT  L +  E     N +    G ++
Sbjct: 159 YIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEA----NNITIATGETV 214
Query: 273 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRT 332
           +  E   DGRV  V + D +  DAD +V+ +G +P  +  +        G I+ D   RT
Sbjct: 215 ERYEG--DGRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRT 271
Query: 333 RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 374
             P +FA+GD         D    +    +AR+  +  +K L
Sbjct: 272 SEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNL 313

>pdb|1JOA|A Chain A, Nadh Peroxidase With Cysteine-Sulfenic Acid Length = 447

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 69/162 (42%), Gaps = 11/162 (6%)
Query: 217 YIGMEVAAA--AVGWKLDTTIIF--PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI 272
           YIG+E A A    G K+    I   P    L + FT  L +  E     N +    G ++
Sbjct: 159 YIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEA----NNITIATGETV 214
Query: 273 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRT 332
           +  E   DGRV  V + D +  DAD +V+ +G +P  +  +        G I+ D   RT
Sbjct: 215 ERYEG--DGRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRT 271
Query: 333 RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 374
             P +FA+GD         D    +    +AR+  +  +K L
Sbjct: 272 SEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNL 313

>pdb|1NHQ|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And Cys42ser Mutants: Active Site Structure, Mechanistic Implications, And An Unusual Environment Of Arg303 Length = 447

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 69/162 (42%), Gaps = 11/162 (6%)
Query: 217 YIGMEVAAA--AVGWKLDTTIIF--PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI 272
           YIG+E A A    G K+    I   P    L + FT  L +  E     N +    G ++
Sbjct: 159 YIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEA----NNITIATGETV 214
Query: 273 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRT 332
           +  E   DGRV  V + D +  DAD +V+ +G +P  +  +        G I+ D   RT
Sbjct: 215 ERYEG--DGRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRT 271
Query: 333 RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 374
             P +FA+GD         D    +    +AR+  +  +K L
Sbjct: 272 SEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNL 313

>pdb|1NHS|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox Centre In Enterococcal Nadh Peroxidase To A Disulfide Length = 447

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 69/162 (42%), Gaps = 11/162 (6%)
Query: 217 YIGMEVAAA--AVGWKLDTTIIF--PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI 272
           YIG+E A A    G K+    I   P    L + FT  L +  E     N +    G ++
Sbjct: 159 YIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEA----NNITIATGETV 214
Query: 273 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRT 332
           +  E   DGRV  V + D +  DAD +V+ +G +P  +  +        G I+ D   RT
Sbjct: 215 ERYEG--DGRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRT 271
Query: 333 RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 374
             P +FA+GD         D    +    +AR+  +  +K L
Sbjct: 272 SEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNL 313

>pdb|1NHP|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And Cys42ser Mutants: Active Site Structure, Mechanistic Implications, And An Unusual Environment Of Arg303 Length = 447

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 69/162 (42%), Gaps = 11/162 (6%)
Query: 217 YIGMEVAAA--AVGWKLDTTIIF--PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI 272
           YIG+E A A    G K+    I   P    L + FT  L +  E     N +    G ++
Sbjct: 159 YIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEA----NNITIATGETV 214
Query: 273 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRT 332
           +  E   DGRV  V + D +  DAD +V+ +G +P  +  +        G I+ D   RT
Sbjct: 215 ERYEG--DGRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRT 271
Query: 333 RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 374
             P +FA+GD         D    +    +AR+  +  +K L
Sbjct: 272 SEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNL 313

>pdb|2WOI|A Chain A, Trypanothione Reductase From Trypanosoma Brucei Length = 495

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 16/140 (11%)
Query: 240 NHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTI 299
           N+L+ R F  ++ +   +    NG++ +   +   +   +DG    V  E G T+D D +
Sbjct: 226 NNLILRGFDETIREEVTKQLTANGIEIMTNENPAKVSLNTDGS-KHVTFESGKTLDVDVV 284
Query: 300 VIGIGAKPTVSPFE--RVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVA----AFPLKMYD 352
           ++ IG  P  +  +   VG+  +  GG+QVD   RT +P I+AIGD+       P+ + +
Sbjct: 285 MMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTNVPNIYAIGDITDRLMLTPVAINE 344
Query: 353 RTARVEHV--------DHAR 364
             A V+ V        DH R
Sbjct: 345 GAALVDTVFGNKPRKTDHTR 364

>pdb|2WBA|A Chain A, Properties Of Trypanothione Reductase From T. Brucei Length = 492

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 16/140 (11%)
Query: 240 NHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTI 299
           N+L+ R F  ++ +   +    NG++ +   +   +   +DG    V  E G T+D D +
Sbjct: 223 NNLILRGFDETIREEVTKQLTANGIEIMTNENPAKVSLNTDGS-KHVTFESGKTLDVDVV 281
Query: 300 VIGIGAKPTVSPFE--RVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVA----AFPLKMYD 352
           ++ IG  P  +  +   VG+  +  GG+QVD   RT +P I+AIGD+       P+ + +
Sbjct: 282 MMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTNVPNIYAIGDITDRLMLTPVAINE 341
Query: 353 RTARVEHV--------DHAR 364
             A V+ V        DH R
Sbjct: 342 GAALVDTVFGNKPRKTDHTR 361

>pdb|4DNA|A Chain A, Crystal Structure Of Putative Glutathione Reductase From Sinorhizobium Meliloti 1021 Length = 463

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 89/200 (44%), Gaps = 25/200 (12%)
Query: 156 NSGKLLKYGSLIVATGCTASRFPEKIGGY------LPGVHYI---RDVADADALISSLEK 206
           N+ KLL  G  +     TA R    +GG+      LPG        +  D  AL  S+  
Sbjct: 121 NTVKLLASGKTV-----TAERIVIAVGGHPSPHDALPGHELCITSNEAFDLPALPESILI 175
Query: 207 AKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF 266
           A         YI +E A    G  + TT+I+    +L R F     +      ++ G++ 
Sbjct: 176 A------GGGYIAVEFANIFHGLGVKTTLIYRGKEILSR-FDQDXRRGLHAAXEEKGIRI 228
Query: 267 VKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLNSS-VGG 323
           +    I+++ A +DGR  A   + G  + AD + + +G  P  +    E  G+ ++ +G 
Sbjct: 229 LCEDIIQSVSADADGRRVATTXKHGEIV-ADQVXLALGRXPNTNGLGLEAAGVRTNELGA 287
Query: 324 IQVDGQFRTRMPGIFAIGDV 343
           I VD   RT  PGI+A+GDV
Sbjct: 288 IIVDAFSRTSTPGIYALGDV 307

>pdb|1H6V|A Chain A, Mammalian Thioredoxin Reductase Length = 499

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 72/145 (49%), Gaps = 13/145 (8%)
Query: 217 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG---ASIK 273
           Y+ +E A    G  LD T++     +L R F   +A +  +  +++G+KF++      I+
Sbjct: 200 YVALECAGFLAGIGLDVTVMV--RSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPTKIE 257
Query: 274 NLEAGSDGR--VAAVKLEDGSTIDA--DTIVIGIGAKPTVSP--FERVG--LNSSVGGIQ 325
            +EAG+ GR  V A       TI+   +T+++ +G          E VG  +N   G I 
Sbjct: 258 QIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVGRDSCTRTIGLETVGVKINEKTGKIP 317
Query: 326 VDGQFRTRMPGIFAIGDVAAFPLKM 350
           V  + +T +P I+AIGD+    L++
Sbjct: 318 VTDEEQTNVPYIYAIGDILEGKLEL 342

>pdb|3EAN|A Chain A, Crystal Structure Of Recombinant Rat Selenoprotein Thioredoxin Reductase 1 With Reduced C-Terminal Tail Length = 499

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 72/145 (49%), Gaps = 13/145 (8%)
Query: 217 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG---ASIK 273
           Y+ +E A    G  LD T++     +L R F   +A +  +  +++G+KF++      I+
Sbjct: 200 YVALECAGFLAGIGLDVTVMV--RSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPTKIE 257
Query: 274 NLEAGSDGR--VAAVKLEDGSTIDA--DTIVIGIGAKPTVSP--FERVG--LNSSVGGIQ 325
            +EAG+ GR  V A       TI+   +T+++ +G          E VG  +N   G I 
Sbjct: 258 QIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVGRDSCTRTIGLETVGVKINEKTGKIP 317
Query: 326 VDGQFRTRMPGIFAIGDVAAFPLKM 350
           V  + +T +P I+AIGD+    L++
Sbjct: 318 VTDEEQTNVPYIYAIGDILEGKLEL 342

>pdb|2BC1|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh Oxidase: C44s Nox Length = 490

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 107/245 (43%), Gaps = 24/245 (9%)
Query: 128 EWYKEKGIEMIYQDPVTSIDIEKQT---LITNSGKLLKYGSLIVATGCTASRFPEK---- 180
           E  +  G ++  + PV SID + +T   L+     +  Y  LI ATG      P K    
Sbjct: 100 EELESLGAKVYMESPVQSIDYDAKTVTALVDGKNHVETYDKLIFATGSQPILPPIKGAEI 159
Query: 181 ------IGGYLPGVHYIRDVADADALISSLEKA--KKXXXXXXXYIGMEVAAAAVGWKLD 232
                     L  + +++   ++  +I+ LE    K+       YIG+E+A A      +
Sbjct: 160 KEGSLEFEATLENLQFVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVELAEAFQRKGKE 219
Query: 233 TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS 292
             +I   +  L   +   L     +  +++G++   G ++K  E   +G+V  + + D +
Sbjct: 220 VVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGETVK--EVAGNGKVEKI-ITDKN 276
Query: 293 TIDADTIVIGIGAKPTVSPFE-RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMY 351
             D D +++ +G +P  +    ++ L  + G   V+ +  T +PG++AIGD A     +Y
Sbjct: 277 EYDVDMVILAVGFRPNTTLGNGKIDLFRN-GAFLVNKRQETSIPGVYAIGDCAT----IY 331
Query: 352 DRTAR 356
           D   R
Sbjct: 332 DNATR 336

>pdb|2BC0|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh Oxidase: Wild-Type Nox Length = 490

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 107/245 (43%), Gaps = 24/245 (9%)
Query: 128 EWYKEKGIEMIYQDPVTSIDIEKQT---LITNSGKLLKYGSLIVATGCTASRFPEK---- 180
           E  +  G ++  + PV SID + +T   L+     +  Y  LI ATG      P K    
Sbjct: 100 EELESLGAKVYMESPVQSIDYDAKTVTALVDGKNHVETYDKLIFATGSQPILPPIKGAEI 159
Query: 181 ------IGGYLPGVHYIRDVADADALISSLEKA--KKXXXXXXXYIGMEVAAAAVGWKLD 232
                     L  + +++   ++  +I+ LE    K+       YIG+E+A A      +
Sbjct: 160 KEGSLEFEATLENLQFVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVELAEAFQRKGKE 219
Query: 233 TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS 292
             +I   +  L   +   L     +  +++G++   G ++K  E   +G+V  + + D +
Sbjct: 220 VVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGETVK--EVAGNGKVEKI-ITDKN 276
Query: 293 TIDADTIVIGIGAKPTVSPFE-RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMY 351
             D D +++ +G +P  +    ++ L  + G   V+ +  T +PG++AIGD A     +Y
Sbjct: 277 EYDVDMVILAVGFRPNTTLGNGKIDLFRN-GAFLVNKRQETSIPGVYAIGDCAT----IY 331
Query: 352 DRTAR 356
           D   R
Sbjct: 332 DNATR 336

>pdb|2V3A|A Chain A, Crystal Structure Of Rubredoxin Reductase From Pseudomonas Aeruginosa. Length = 384

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 123/301 (40%), Gaps = 28/301 (9%)
Query: 49  NENREFVIVGGGNAAGYAARTFVEHGMADGR--LCIVSKEAYAPYERPALTKGYLFPLDK 106
           +E    VI+G G A    AR + +    DG   L +++ +    Y +P L+ G+    D 
Sbjct: 2   SERAPLVIIGTGLAGYNLAREWRK---LDGETPLLMITADDGRSYSKPMLSTGFSKNKDA 58
Query: 107 KPARLPGFHTCVGSGGERQTPEWYKEK-GIEMIYQDPVTSIDIEKQTLITNSGKLLKYGS 165
                         G     P    E+    ++    VT ID   Q +     ++ +Y  
Sbjct: 59  -------------DGLAMAEPGAMAEQLNARILTHTRVTGIDPGHQRIWIGEEEV-RYRD 104
Query: 166 LIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVA-- 223
           L++A G    R P + G     ++ I D+ D      +    ++        IG E A  
Sbjct: 105 LVLAWGAEPIRVPVE-GDAQDALYPINDLEDYARFRQAAAGKRRVLLLGAGLIGCEFAND 163
Query: 224 AAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV 283
            ++ G++LD  ++ P   ++  L  P+ A+  +   +  GV+F  G  + +L+   +G  
Sbjct: 164 LSSGGYQLD--VVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKAGEGLE 221
Query: 284 AAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDV 343
           A   L DG  I  D +V  +G +P        GL  + G I VD   RT    I+A+GD 
Sbjct: 222 A--HLSDGEVIPCDLVVSAVGLRPRTELAFAAGLAVNRG-IVVDRSLRTSHANIYALGDC 278
Query: 344 A 344
           A
Sbjct: 279 A 279

>pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mutant: R303m Length = 447

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 68/162 (41%), Gaps = 11/162 (6%)
Query: 217 YIGMEVAAA--AVGWKLDTTIIF--PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI 272
           YIG+E A A    G K+    I   P    L + FT  L +  E     N +    G ++
Sbjct: 159 YIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEA----NNITIATGETV 214
Query: 273 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRT 332
           +  E   DGRV  V + D +  DAD +V+ +G +P  +  +        G I+ D   RT
Sbjct: 215 ERYEG--DGRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRT 271
Query: 333 RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 374
             P +FA+GD         D    +    +A +  +  +K L
Sbjct: 272 SEPDVFAVGDATLIKYNPADTEVNIALATNAMKQGRFAVKNL 313

>pdb|2HQM|A Chain A, Crystal Structure Of Glutathione Reductase Glr1 From The Yeast Saccharomyces Cerevisiae Length = 479

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 90/204 (44%), Gaps = 15/204 (7%)
Query: 145 SIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL 204
           +++++K+    N+ ++     ++VATG  A  FPE I G+  G        D+D      
Sbjct: 134 NVEVQKRD---NTTEVYSANHILVATGGKAI-FPENIPGFELG-------TDSDGFFRLE 182
Query: 205 EKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGV 264
           E+ KK       YIG+E+A    G   +T ++     +L R F   +       Y + G+
Sbjct: 183 EQPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVL-RKFDECIQNTITDHYVKEGI 241
Query: 265 KFVKGASIKNLEAGSDGRVAAVKLEDGSTI-DADTIVIGIGAKPTVSP-FERVGLN-SSV 321
              K + I  +E   +     + + D  +I D D ++  IG K  +    E VG+  +S 
Sbjct: 242 NVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHLGMGSENVGIKLNSH 301
Query: 322 GGIQVDGQFRTRMPGIFAIGDVAA 345
             I  D    T +P I+++GDV  
Sbjct: 302 DQIIADEYQNTNVPNIYSLGDVVG 325

>pdb|1ZY8|A Chain A, The Crystal Structure Of Dihydrolipoamide Dehydrogenase And Dihydrolipoamide Dehydrogenase-Binding Protein (Didomain) Subcomplex Of Human Pyruvate Dehydrogenase Complex. Length = 474

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 101/238 (42%), Gaps = 29/238 (12%)
Query: 159 KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA-KKXXXXXXXY 217
           +++   ++++ATG   + FP        G+    D   +     SL+K  +K        
Sbjct: 137 QVIDTKNILIATGSEVTPFP--------GITIDEDTIVSSTGALSLKKVPEKMVVIGAGV 188
Query: 218 IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 277
           IG+E+ +       D T +    H+        +++ ++++ Q+ G KF     +     
Sbjct: 189 IGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATK 248
Query: 278 GSDGRVAAVKLEDGS-----TIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQVDGQ 329
            SDG++  V +E  S      I  D +++ IG +P       E +G+     G I V+ +
Sbjct: 249 KSDGKID-VSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTR 307
Query: 330 FRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT-YDYLP 386
           F+T++P I+AIGDV A P+  +           A      C++ +     H  Y+ +P
Sbjct: 308 FQTKIPNIYAIGDVVAGPMLAH----------KAEDEGIICVEGMAGGAVHIDYNCVP 355

>pdb|2ZZ0|A Chain A, Crystal Structure Of Human Thioredoxin Reductase I (Secys 498 Cys) Length = 513

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 13/138 (9%)
Query: 217 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG---ASIK 273
           Y+ +E A    G  LD T++     +L R F   +A +  +  +++G+KF++      ++
Sbjct: 214 YVALECAGFLAGIGLDVTVMV--RSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVE 271
Query: 274 NLEAGSDGRVAAVKLEDGSTI----DADTIVIGIGAKPTVSP--FERVG--LNSSVGGIQ 325
            +EAG+ GR+  V     S      + +T+++ IG          E VG  +N   G I 
Sbjct: 272 QIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIP 331
Query: 326 VDGQFRTRMPGIFAIGDV 343
           V  + +T +P I+AIGD+
Sbjct: 332 VTDEEQTNVPYIYAIGDI 349

>pdb|2CFY|A Chain A, Crystal Structure Of Human Thioredoxin Reductase 1 Length = 521

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 13/138 (9%)
Query: 217 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG---ASIK 273
           Y+ +E A    G  LD T++     +L R F   +A +  +  +++G+KF++      ++
Sbjct: 222 YVALECAGFLAGIGLDVTVMV--RSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVE 279
Query: 274 NLEAGSDGRVAAVKLEDGSTI----DADTIVIGIGAKPTVSP--FERVG--LNSSVGGIQ 325
            +EAG+ GR+  V     S      + +T+++ IG          E VG  +N   G I 
Sbjct: 280 QIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIP 339
Query: 326 VDGQFRTRMPGIFAIGDV 343
           V  + +T +P I+AIGD+
Sbjct: 340 VTDEEQTNVPYIYAIGDI 357

>pdb|1ZMC|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase Complexed To Nad+ Length = 474

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 101/238 (42%), Gaps = 29/238 (12%)
Query: 159 KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA-KKXXXXXXXY 217
           +++   ++++ATG   + FP        G+    D   +     SL+K  +K        
Sbjct: 137 QVIDTKNILIATGSEVTPFP--------GITIDEDTIVSSTGALSLKKVPEKMVVIGAGV 188
Query: 218 IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 277
           IG+E+ +       D T +    H+        +++ ++++ Q+ G KF     +     
Sbjct: 189 IGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATK 248
Query: 278 GSDGRVAAVKLEDGS-----TIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQVDGQ 329
            SDG++  V +E  S      I  D +++ IG +P       E +G+     G I V+ +
Sbjct: 249 KSDGKID-VSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTR 307
Query: 330 FRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT-YDYLP 386
           F+T++P I+AIGDV A P+  +           A      C++ +     H  Y+ +P
Sbjct: 308 FQTKIPNIYAIGDVVAGPMLAH----------KAEDEGIICVEGMAGGAVHIDYNCVP 355

>pdb|3RNM|A Chain A, The Crystal Structure Of The Subunit Binding Of Human Dihydrolipoamide Transacylase (E2b) Bound To Human Dihydrolipoamide Dehydrogenase (E3) Length = 495

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 101/238 (42%), Gaps = 29/238 (12%)
Query: 159 KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA-KKXXXXXXXY 217
           +++   ++++ATG   + FP        G+    D   +     SL+K  +K        
Sbjct: 158 QVIDTKNILIATGSEVTPFP--------GITIDEDTIVSSTGALSLKKVPEKMVVIGAGV 209
Query: 218 IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 277
           IG+E+ +       D T +    H+        +++ ++++ Q+ G KF     +     
Sbjct: 210 IGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATK 269
Query: 278 GSDGRVAAVKLEDGS-----TIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQVDGQ 329
            SDG++  V +E  S      I  D +++ IG +P       E +G+     G I V+ +
Sbjct: 270 KSDGKID-VSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTR 328
Query: 330 FRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT-YDYLP 386
           F+T++P I+AIGDV A P+  +           A      C++ +     H  Y+ +P
Sbjct: 329 FQTKIPNIYAIGDVVAGPMLAH----------KAEDEGIICVEGMAGGAVHIDYNCVP 376

>pdb|2J3N|A Chain A, X-Ray Structure Of Human Thioredoxin Reductase 1 Length = 519

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 13/138 (9%)
Query: 217 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG---ASIK 273
           Y+ +E A    G  LD T++     +L R F   +A +  +  +++G+KF++      ++
Sbjct: 220 YVALECAGFLAGIGLDVTVMV--RSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVE 277
Query: 274 NLEAGSDGRVAAVKLEDGSTI----DADTIVIGIGAKPTVSP--FERVG--LNSSVGGIQ 325
            +EAG+ GR+  V     S      + +T+++ IG          E VG  +N   G I 
Sbjct: 278 QIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIP 337
Query: 326 VDGQFRTRMPGIFAIGDV 343
           V  + +T +P I+AIGD+
Sbjct: 338 VTDEEQTNVPYIYAIGDI 355

>pdb|3QFA|A Chain A, Crystal Structure Of The Human Thioredoxin Reductase-Thioredoxin Complex Length = 519

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 13/138 (9%)
Query: 217 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG---ASIK 273
           Y+ +E A    G  LD T++     +L R F   +A +  +  +++G+KF++      ++
Sbjct: 220 YVALECAGFLAGIGLDVTVMV--RSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVE 277
Query: 274 NLEAGSDGRVAAVKLEDGSTI----DADTIVIGIGAKPTVSP--FERVG--LNSSVGGIQ 325
            +EAG+ GR+  V     S      + +T+++ IG          E VG  +N   G I 
Sbjct: 278 QIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIP 337
Query: 326 VDGQFRTRMPGIFAIGDV 343
           V  + +T +P I+AIGD+
Sbjct: 338 VTDEEQTNVPYIYAIGDI 355

>pdb|3NTA|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent Persulfide Reductase Length = 574

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 104/247 (42%), Gaps = 34/247 (13%)
Query: 125 QTPEWYKEK-GIEMIYQDPVTSID-----IEKQTLITNSGKLLKYGSLIVATGCTASRFP 178
           QTPE +K +  +E+  +  V +ID     +  + L+  S     Y +L+++ G  A   P
Sbjct: 62  QTPESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGA-APIVP 120
Query: 179 EKIGGYLPGVHYIRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 236
              G   P  H +R++ D D ++ +++    +        +IG+E   +     + TT++
Sbjct: 121 PIPGVDNPLTHSLRNIPDXDRILQTIQXNNVEHATVVGGGFIGLEXXESLHHLGIKTTLL 180
Query: 237 FPENHLLQRLFTP---SLAQRYEQLYQQNGVKFVKGASIKNLE-----------AGSDGR 282
                L  ++ TP     A    Q  +  GV    G ++  +            AG D  
Sbjct: 181 ----ELADQVXTPVDREXAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTA 236
Query: 283 VAAVK------LEDGSTIDADTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMP 335
              +K      L +G  ++ D ++  IG +P        GL    +GGI+V+   +T  P
Sbjct: 237 HQHIKGHLSLTLSNGELLETDLLIXAIGVRPETQLARDAGLAIGELGGIKVNAXXQTSDP 296
Query: 336 GIFAIGD 342
            I+A+GD
Sbjct: 297 AIYAVGD 303

>pdb|3NT6|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent Persulfide Reductase C43sC531S DOUBLE MUTANT Length = 574

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 104/247 (42%), Gaps = 34/247 (13%)
Query: 125 QTPEWYKEK-GIEMIYQDPVTSID-----IEKQTLITNSGKLLKYGSLIVATGCTASRFP 178
           QTPE +K +  +E+  +  V +ID     +  + L+  S     Y +L+++ G  A   P
Sbjct: 62  QTPESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGA-APIVP 120
Query: 179 EKIGGYLPGVHYIRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 236
              G   P  H +R++ D D ++ +++    +        +IG+E   +     + TT++
Sbjct: 121 PIPGVDNPLTHSLRNIPDXDRILQTIQXNNVEHATVVGGGFIGLEXXESLHHLGIKTTLL 180
Query: 237 FPENHLLQRLFTP---SLAQRYEQLYQQNGVKFVKGASIKNLE-----------AGSDGR 282
                L  ++ TP     A    Q  +  GV    G ++  +            AG D  
Sbjct: 181 ----ELADQVXTPVDREXAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTA 236
Query: 283 VAAVK------LEDGSTIDADTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMP 335
              +K      L +G  ++ D ++  IG +P        GL    +GGI+V+   +T  P
Sbjct: 237 HQHIKGHLSLTLSNGELLETDLLIXAIGVRPETQLARDAGLAIGELGGIKVNAXXQTSDP 296
Query: 336 GIFAIGD 342
            I+A+GD
Sbjct: 297 AIYAVGD 303

>pdb|3KLJ|A Chain A, Crystal Structure Of Nadh:rubredoxin Oxidoreductase From Clostridium Acetobutylicum Length = 385

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 69/301 (22%), Positives = 125/301 (41%), Gaps = 49/301 (16%)
Query: 53  EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLP 112
           + +I+G G A   AA+  +  G  D  + +++ E Y PY RP L +     +  K   + 
Sbjct: 11  KILILGAGPAGFSAAKAAL--GKCDD-ITMINSEKYLPYYRPRLNE-----IIAKNKSID 62
Query: 113 GFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGC 172
                       +  +WY++  I++I  +  TSID   + +   SG+ +KY  LI+A+G 
Sbjct: 63  DILI--------KKNDWYEKNNIKVITSEFATSIDPNNKLVTLKSGEKIKYEKLIIASGS 114
Query: 173 TASRFPEKIGGYLPGVHYIRDVADADALISSLEKAK---KXXXXXXXYIGMEVAAAAV-- 227
            A++        +P    I  +   D  +   ++ K   K        +G+E+A A +  
Sbjct: 115 IANKIK------VPHADEIFSLYSYDDALKIKDECKNKGKAFIIGGGILGIELAQAIIDS 168
Query: 228 GWKLDTTII--FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 285
           G      II  +P    L R     L  + ++L    G+K    ++ + +          
Sbjct: 169 GTPASIGIILEYPLERQLDRDGGLFLKDKLDRL----GIKIYTNSNFEEM---------- 214
Query: 286 VKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 345
                G  I +  ++  +G KP +   +   + +S  GI V+    T +  I+A GDVA 
Sbjct: 215 -----GDLIRSSCVITAVGVKPNLDFIKDTEI-ASKRGILVNDHMETSIKDIYACGDVAE 268
Query: 346 F 346
           F
Sbjct: 269 F 269

>pdb|1NDA|A Chain A, The Structure Of Trypanosoma Cruzi Trypanothione Reductase In The Oxidized And Nadph Reduced State Length = 491

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 15/138 (10%)
Query: 241 HLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV 300
            ++ R F  +L +   +    NG++ +   +   +E  +DG   +V  E G  +D D ++
Sbjct: 224 EMILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGS-KSVTFESGKKMDFDLVM 282
Query: 301 IGIGAKPTVSPFE--RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA----FPLKMYDRT 354
           + IG  P     +    G+    GG+QVD   RT +  I+AIGDV       P+ + +  
Sbjct: 283 MAIGRSPRTKDLQLQNAGVMIKNGGVQVDEYSRTNVSNIYAIGDVTNRVMLTPVAINEAA 342
Query: 355 ARVEHV--------DHAR 364
           A V+ V        DH R
Sbjct: 343 ALVDTVFGTNPRKTDHTR 360

>pdb|1GXF|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With The Inhibitor Quinacrine Mustard Length = 492

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 15/137 (10%)
Query: 242 LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 301
           ++ R F  +L +   +    NG++ +   +   +E  +DG   +V  E G  +D D +++
Sbjct: 226 MILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGS-KSVTFESGKKMDFDLVMM 284
Query: 302 GIGAKPTVSPFE--RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVA----AFPLKMYDRTA 355
            IG  P     +    G+    GG+QVD   RT +  I+AIGDV       P+ + +  A
Sbjct: 285 AIGRSPRTKDLQLQNAGVMIKNGGVQVDEYSRTNVSNIYAIGDVTNRVMLTPVAINEAAA 344
Query: 356 RVEHV--------DHAR 364
            V+ V        DH R
Sbjct: 345 LVDTVFGTTPRKTDHTR 361

>pdb|1AOG|A Chain A, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form) Length = 485

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 15/137 (10%)
Query: 242 LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 301
           ++ R F  +L +   +    NG++ +   +   +E  +DG   +V  E G  +D D +++
Sbjct: 224 MILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGS-KSVTFESGKKMDFDLVMM 282
Query: 302 GIGAKPTVSPFE--RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVA----AFPLKMYDRTA 355
            IG  P     +    G+    GG+QVD   RT +  I+AIGDV       P+ + +  A
Sbjct: 283 AIGRSPRTKDLQLQNAGVMIKNGGVQVDEYSRTNVSNIYAIGDVTNRVMLTPVAINEAAA 342
Query: 356 RVEHV--------DHAR 364
            V+ V        DH R
Sbjct: 343 LVDTVFGTTPRKTDHTR 359

>pdb|1BZL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With Trypanothione, And The Structure- Based Discovery Of New Natural Product Inhibitors Length = 486

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 15/137 (10%)
Query: 242 LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 301
           ++ R F  +L +   +    NG++ +   +   +E  +DG   +V  E G  +D D +++
Sbjct: 225 MILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGS-KSVTFESGKKMDFDLVMM 283
Query: 302 GIGAKPTVSPFE--RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVA----AFPLKMYDRTA 355
            IG  P     +    G+    GG+QVD   RT +  I+AIGDV       P+ + +  A
Sbjct: 284 AIGRSPRTKDLQLQNAGVMIKNGGVQVDEYSRTNVSNIYAIGDVTNRVMLTPVAINEAAA 343
Query: 356 RVEHV--------DHAR 364
            V+ V        DH R
Sbjct: 344 LVDTVFGTTPRKTDHTR 360

>pdb|1GER|A Chain A, The Structure Of Glutathione Reductase From Escherichia Coli At 1.86 Angstroms Resolution: Comparison With The Enzyme From Human Erythrocytes Length = 450

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 89/198 (44%), Gaps = 15/198 (7%)
Query: 148 IEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA 207
           ++ +TL  N G+ +    +++ATG   S  P+     +PGV Y     D+D   +     
Sbjct: 118 VDAKTLEVN-GETITADHILIATGGRPSH-PD-----IPGVEY---GIDSDGFFALPALP 167
Query: 208 KKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 267
           ++       YI +E+A    G    T + F   H   R F P +++   ++    G +  
Sbjct: 168 ERVAVVGAGYIAVELAGVINGLGAKTHL-FVRKHAPLRSFDPMISETLVEVMNAEGPQLH 226
Query: 268 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSSVGG-I 324
             A  K +   +DG +  ++LEDG +   D ++  IG +P       E  G+ ++  G I
Sbjct: 227 TNAIPKAVVKNTDGSLT-LELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYI 285
Query: 325 QVDGQFRTRMPGIFAIGD 342
            VD    T + GI+A+GD
Sbjct: 286 VVDKYQNTNIEGIYAVGD 303

>pdb|1DXL|A Chain A, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase From Pisum Sativum Length = 470

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 105/241 (43%), Gaps = 27/241 (11%)
Query: 154 ITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYI-RDVADADALISSLEKAKKXXX 212
           I     ++K   +I+ATG             LPGV    + +  +   ++  E  KK   
Sbjct: 131 IEGENTVVKGKHIIIATGSDVKS--------LPGVTIDEKKIVSSTGALALSEIPKKLVV 182
Query: 213 XXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI 272
               YIG+E+ +       + T++   + ++  +    + +++++  ++ G+KF     +
Sbjct: 183 IGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTM-DAEIRKQFQRSLEKQGMKFKLKTKV 241
Query: 273 KNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVS--PFERVGLNSS-VGGIQV 326
             ++   DG    V+   G   + I+AD +++  G  P  S    +++G+ +  +G I V
Sbjct: 242 VGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGRILV 301
Query: 327 DGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT-YDYL 385
           + +F T + G++AIGDV   P+  +           A +    C++ L     H  YD +
Sbjct: 302 NERFSTNVSGVYAIGDVIPGPMLAH----------KAEEDGVACVEYLAGKVGHVDYDKV 351
Query: 386 P 386
           P
Sbjct: 352 P 352

>pdb|4EQW|A Chain A, Crystal Structure Of The Y361f, Y419f Mutant Of Staphylococcus Aureus Coadr Length = 437

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 97/242 (40%), Gaps = 22/242 (9%)
Query: 126 TPE-WYKEKGIEMIYQDPVTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFPE 179
           TPE +Y  K I +     V +I+ E+QT+      TN      Y  LI++ G +A+    
Sbjct: 62  TPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-- 119
Query: 180 KIGGYLPGVHY-IRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 236
              G+   + + +R++ D DA+   ++  +  K       Y+ +EV        L  T+I
Sbjct: 120 ---GFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLI 176
Query: 237 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 296
              + +  +L    + Q       +  + +     I  +          +  + G     
Sbjct: 177 HRSDKI-NKLMDADMNQPILDELDKREIPYRLNEEINAINGNE------ITFKSGKVEHY 229
Query: 297 DTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA 355
           D I+ G+G  P     E   +     G I V+ +F T +P I+AIGD+A    +  D  A
Sbjct: 230 DMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPA 289
Query: 356 RV 357
            V
Sbjct: 290 SV 291

>pdb|4EQS|A Chain A, Crystal Structure Of The Y419f Mutant Of Staphylococcus Aureus Coadr Length = 437

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 97/242 (40%), Gaps = 22/242 (9%)
Query: 126 TPE-WYKEKGIEMIYQDPVTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFPE 179
           TPE +Y  K I +     V +I+ E+QT+      TN      Y  LI++ G +A+    
Sbjct: 62  TPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-- 119
Query: 180 KIGGYLPGVHY-IRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 236
              G+   + + +R++ D DA+   ++  +  K       Y+ +EV        L  T+I
Sbjct: 120 ---GFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLI 176
Query: 237 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 296
              + +  +L    + Q       +  + +     I  +          +  + G     
Sbjct: 177 HRSDKI-NKLMDADMNQPILDELDKREIPYRLNEEINAINGNE------ITFKSGKVEHY 229
Query: 297 DTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA 355
           D I+ G+G  P     E   +     G I V+ +F T +P I+AIGD+A    +  D  A
Sbjct: 230 DMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPA 289
Query: 356 RV 357
            V
Sbjct: 290 SV 291

>pdb|4EQR|A Chain A, Crystal Structure Of The Y361f Mutant Of Staphylococcus Aureus Coadr Length = 437

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 97/242 (40%), Gaps = 22/242 (9%)
Query: 126 TPE-WYKEKGIEMIYQDPVTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFPE 179
           TPE +Y  K I +     V +I+ E+QT+      TN      Y  LI++ G +A+    
Sbjct: 62  TPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-- 119
Query: 180 KIGGYLPGVHY-IRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 236
              G+   + + +R++ D DA+   ++  +  K       Y+ +EV        L  T+I
Sbjct: 120 ---GFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLI 176
Query: 237 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 296
              + +  +L    + Q       +  + +     I  +          +  + G     
Sbjct: 177 HRSDKI-NKLMDADMNQPILDELDKREIPYRLNEEINAINGNE------ITFKSGKVEHY 229
Query: 297 DTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA 355
           D I+ G+G  P     E   +     G I V+ +F T +P I+AIGD+A    +  D  A
Sbjct: 230 DMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPA 289
Query: 356 RV 357
            V
Sbjct: 290 SV 291

>pdb|4EMW|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The Covalent Inhibitor Etvc-Coa Length = 436

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 97/242 (40%), Gaps = 22/242 (9%)
Query: 126 TPE-WYKEKGIEMIYQDPVTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFPE 179
           TPE +Y  K I +     V +I+ E+QT+      TN      Y  LI++ G +A+    
Sbjct: 62  TPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-- 119
Query: 180 KIGGYLPGVHY-IRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 236
              G+   + + +R++ D DA+   ++  +  K       Y+ +EV        L  T+I
Sbjct: 120 ---GFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLI 176
Query: 237 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 296
              + +  +L    + Q       +  + +     I  +          +  + G     
Sbjct: 177 HRSDKI-NKLMDADMNQPILDELDKREIPYRLNEEINAINGNE------ITFKSGKVEHY 229
Query: 297 DTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA 355
           D I+ G+G  P     E   +     G I V+ +F T +P I+AIGD+A    +  D  A
Sbjct: 230 DMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPA 289
Query: 356 RV 357
            V
Sbjct: 290 SV 291

>pdb|4EM3|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The Covalent Inhibitor Mevs-Coa Length = 437

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 97/242 (40%), Gaps = 22/242 (9%)
Query: 126 TPE-WYKEKGIEMIYQDPVTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFPE 179
           TPE +Y  K I +     V +I+ E+QT+      TN      Y  LI++ G +A+    
Sbjct: 62  TPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-- 119
Query: 180 KIGGYLPGVHY-IRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 236
              G+   + + +R++ D DA+   ++  +  K       Y+ +EV        L  T+I
Sbjct: 120 ---GFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLI 176
Query: 237 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 296
              + +  +L    + Q       +  + +     I  +          +  + G     
Sbjct: 177 HRSDKI-NKLMDADMNQPILDELDKREIPYRLNEEINAINGNE------ITFKSGKVEHY 229
Query: 297 DTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA 355
           D I+ G+G  P     E   +     G I V+ +F T +P I+AIGD+A    +  D  A
Sbjct: 230 DMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPA 289
Query: 356 RV 357
            V
Sbjct: 290 SV 291

>pdb|1YQZ|A Chain A, Structure Of Coenzyme A-Disulfide Reductase From Staphylococcus Aureus Refined At 1.54 Angstrom Resolution Length = 438

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 97/242 (40%), Gaps = 22/242 (9%)
Query: 126 TPE-WYKEKGIEMIYQDPVTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFPE 179
           TPE +Y  K I +     V +I+ E+QT+      TN      Y  LI++ G +A+    
Sbjct: 63  TPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-- 120
Query: 180 KIGGYLPGVHY-IRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 236
              G+   + + +R++ D DA+   ++  +  K       Y+ +EV        L  T+I
Sbjct: 121 ---GFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLI 177
Query: 237 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 296
              + +  +L    + Q       +  + +     I  +          +  + G     
Sbjct: 178 HRSDKI-NKLMDADMNQPILDELDKREIPYRLNEEINAINGNE------ITFKSGKVEHY 230
Query: 297 DTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA 355
           D I+ G+G  P     E   +     G I V+ +F T +P I+AIGD+A    +  D  A
Sbjct: 231 DMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPA 290
Query: 356 RV 357
            V
Sbjct: 291 SV 292

>pdb|4EQX|A Chain A, Crystal Structure Of The C43s Mutant Of Staphylococcus Aureus Coadr Length = 437

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 97/242 (40%), Gaps = 22/242 (9%)
Query: 126 TPE-WYKEKGIEMIYQDPVTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFPE 179
           TPE +Y  K I +     V +I+ E+QT+      TN      Y  LI++ G +A+    
Sbjct: 62  TPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-- 119
Query: 180 KIGGYLPGVHY-IRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 236
              G+   + + +R++ D DA+   ++  +  K       Y+ +EV        L  T+I
Sbjct: 120 ---GFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLI 176
Query: 237 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 296
              + +  +L    + Q       +  + +     I  +          +  + G     
Sbjct: 177 HRSDKI-NKLMDADMNQPILDELDKREIPYRLNEEINAINGNE------ITFKSGKVEHY 229
Query: 297 DTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA 355
           D I+ G+G  P     E   +     G I V+ +F T +P I+AIGD+A    +  D  A
Sbjct: 230 DMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPA 289
Query: 356 RV 357
            V
Sbjct: 290 SV 291

>pdb|3DGZ|A Chain A, Crystal Structure Of Mouse Mitochondrial Thioredoxin Reductase, C- Terminal 3-Residue Truncation Length = 488

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 85/195 (43%), Gaps = 21/195 (10%)
Query: 160 LLKYGSLIVATGCTASRFPEKIGGYLP-GVHYIRDVADADALISSLEKAKKXXXXXXXYI 218
           LL    +++ATG    R+P ++ G L  G+        +D +    E   K       Y+
Sbjct: 145 LLSAEHIVIATG-GRPRYPTQVKGALEYGI-------TSDDIFWLKESPGKTLVVGASYV 196
Query: 219 GMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG 278
            +E A    G  LDTT++     L  R F   ++    +  + +G +F+KG    +++  
Sbjct: 197 ALECAGFLTGIGLDTTVMMRSIPL--RGFDQQMSSLVTEHMESHGTQFLKGCVPSHIKKL 254
Query: 279 SDGRVAAVKLEDGS-----TIDADTIVIGIGAKPTVSPF--ERVGL--NSSVGGIQVDGQ 329
              ++  V  ED +     T   DT++  IG  P       E+ G+  N     I VD Q
Sbjct: 255 PTNQLQ-VTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQ 313
Query: 330 FRTRMPGIFAIGDVA 344
             T +P I+AIGDVA
Sbjct: 314 EATSVPHIYAIGDVA 328

>pdb|1ZDL|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2 Length = 517

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 85/195 (43%), Gaps = 21/195 (10%)
Query: 160 LLKYGSLIVATGCTASRFPEKIGGYLP-GVHYIRDVADADALISSLEKAKKXXXXXXXYI 218
           LL    +++ATG    R+P ++ G L  G+        +D +    E   K       Y+
Sbjct: 171 LLSAEHIVIATG-GRPRYPTQVKGALEYGI-------TSDDIFWLKESPGKTLVVGASYV 222
Query: 219 GMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG 278
            +E A    G  LDTT++     L  R F   ++    +  + +G +F+KG    +++  
Sbjct: 223 ALECAGFLTGIGLDTTVMMRSIPL--RGFDQQMSSLVTEHMESHGTQFLKGCVPSHIKKL 280
Query: 279 SDGRVAAVKLEDGS-----TIDADTIVIGIGAKPTVSPF--ERVGL--NSSVGGIQVDGQ 329
              ++  V  ED +     T   DT++  IG  P       E+ G+  N     I VD Q
Sbjct: 281 PTNQLQ-VTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQ 339
Query: 330 FRTRMPGIFAIGDVA 344
             T +P I+AIGDVA
Sbjct: 340 EATSVPHIYAIGDVA 354

>pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd Length = 588

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 95/214 (44%), Gaps = 25/214 (11%)
Query: 143 VTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVH------YI 191
           V  I+ E++T+      TN      Y  LI++ G       + I   +PG+        +
Sbjct: 116 VVKINKEEKTITIKNVTTNETYNEAYDVLILSPGA------KPIVPSIPGIEEAKALFTL 169
Query: 192 RDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTP 249
           R+V D D + + ++  K +        +IG+E         ++ T++   N +   +   
Sbjct: 170 RNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEXVENLRERGIEVTLVEXANQVXPPIDYE 229
Query: 250 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV 309
             A  +E   + + V+ V    +  LE       A V+L+ GS I  D +++ IG +P  
Sbjct: 230 XAAYVHEHX-KNHDVELVFEDGVDALEENG----AVVRLKSGSVIQTDXLILAIGVQPES 284
Query: 310 SPFERVGLNSSV-GGIQVDGQFRTRMPGIFAIGD 342
           S  +  GL   V G I+V+ +F+T  P I+AIGD
Sbjct: 285 SLAKGAGLALGVRGTIKVNEKFQTSDPHIYAIGD 318

>pdb|1GES|A Chain A, Anatomy Of An Engineered Nad-Binding Site Length = 450

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 88/204 (43%), Gaps = 27/204 (13%)
Query: 148 IEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA 207
           ++ +TL  N G+ +    +++ATG   S  P+     +PGV Y     D+D   +     
Sbjct: 118 VDAKTLEVN-GETITADHILIATGGRPSH-PD-----IPGVEY---GIDSDGFFALPALP 167
Query: 208 KKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRL------FTPSLAQRYEQLYQQ 261
           ++       YIG+E+     G    T       HL +        F P +++   ++   
Sbjct: 168 ERVAVVGAGYIGVELGGVINGLGAKT-------HLFEMFDAPLPSFDPMISETLVEVMNA 220
Query: 262 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNS 319
            G +    A  K +   +DG +  ++LEDG +   D ++  IG +P       E  G+ +
Sbjct: 221 EGPQLHTNAIPKAVVKNTDGSLT-LELEDGRSETVDCLIWAIGREPANDNINLEAAGVKT 279
Query: 320 SVGG-IQVDGQFRTRMPGIFAIGD 342
           +  G I VD    T + GI+A+GD
Sbjct: 280 NEKGYIVVDKYQNTNIEGIYAVGD 303

>pdb|3AB1|A Chain A, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase Length = 360

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 279 SDGRVAAVKLE--DGS--TIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRM 334
           S+G +  V L   DGS  T++AD ++I IG K  + P  R  L      + VD   +T +
Sbjct: 231 SNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPLARWDLELYENALVVDSHMKTSV 290
Query: 335 PGIFAIGDVAAFPLKM 350
            G++A GD+A +P K+
Sbjct: 291 DGLYAAGDIAYYPGKL 306

>pdb|3OC4|A Chain A, Crystal Structure Of A Pyridine Nucleotide-Disulfide Family Oxidoreductase From The Enterococcus Faecalis V583 Length = 452

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/221 (21%), Positives = 92/221 (41%), Gaps = 9/221 (4%)
Query: 126 TPEWYKEKGIEMIYQDPVTSIDIEKQTLI---TNSGKLLKYGSLIVATGCTASRFPEKI- 181
           T E  + + I+++    V + D+E Q +        +   Y  LI+ATG  AS+F  +I 
Sbjct: 64  TEEELRRQKIQLLLNREVVAXDVENQLIAWTRKEEQQWYSYDKLILATG--ASQFSTQIR 121
Query: 182 GGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENH 241
           G     +   + ++ A A +  LE ++         IG E     V  K    +     +
Sbjct: 122 GSQTEKLLKYKFLSGALAAVPLLENSQTVAVIGAGPIGXEAIDFLVKXKKTVHVFESLEN 181
Query: 242 LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 301
           LL + F        ++  ++  V F    ++  +E  ++G V     ++   I  D+ + 
Sbjct: 182 LLPKYFDKEXVAEVQKSLEKQAVIFHFEETVLGIEETANGIVLETSEQE---ISCDSGIF 238
Query: 302 GIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGD 342
            +   P ++  ++    +    I VD   +T +P +FAIGD
Sbjct: 239 ALNLHPQLAYLDKKIQRNLDQTIAVDAYLQTSVPNVFAIGD 279

>pdb|3URH|A Chain A, Crystal Structure Of A Dihydrolipoamide Dehydrogenase From Sinorhizobium Meliloti 1021 Length = 491

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 53/103 (51%), Gaps = 6/103 (5%)
Query: 251 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA---VKLEDGSTIDADTIVIGIGAKP 307
           +A++ ++   + G+ F  GA +       DG       VK  + +T+DA+ ++I  G KP
Sbjct: 241 VAKQLQRXLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKP 300
Query: 308 TVSPF--ERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFP 347
           +       + G+   S G +++D  F+T + G++AIGDV   P
Sbjct: 301 STDGLGLAKAGVVLDSRGRVEIDRHFQTSIAGVYAIGDVVRGP 343

>pdb|3L8K|A Chain A, Crystal Structure Of A Dihydrolipoyl Dehydrogenase From Sulfolobus Solfataricus Length = 466

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 80/182 (43%), Gaps = 14/182 (7%)
Query: 166 LIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA-KKXXXXXXXYIGMEVAA 224
           +I+A+G   ++        LPGV Y     D     +S  K  +        YIG+E+A+
Sbjct: 136 MIIASGAETAKLR------LPGVEYCLTSDDIFGYKTSFRKLPQDMVIIGAGYIGLEIAS 189
Query: 225 AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA 284
                 + T II   +  L  L    +      + + N +KF   + +  ++   D    
Sbjct: 190 IFRLMGVQTHIIEMLDRALITLEDQDIVNTLLSILKLN-IKF--NSPVTEVKKIKDDEYE 246
Query: 285 AV-KLEDGS--TIDADTIVIGIGAKPTVSPFER-VGLNSSVGGIQVDGQFRTRMPGIFAI 340
            +   +DGS  +I  +++V+  G +P +    R +GL+ S  GI VD   +T +P +FA 
Sbjct: 247 VIYSTKDGSKKSIFTNSVVLAAGRRPVIPEGAREIGLSISKTGIVVDETMKTNIPNVFAT 306
Query: 341 GD 342
           GD
Sbjct: 307 GD 308

>pdb|1ONF|A Chain A, Crystal Structure Of Plasmodium Falciparum Glutathione Reductase Length = 500

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/180 (21%), Positives = 80/180 (44%), Gaps = 11/180 (6%)
Query: 185 LPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQ 244
            P V  I +   +D   + ++++KK       YI +E+        +D+ I    N +L+
Sbjct: 155 FPPVKGIENTISSDEFFN-IKESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILR 213
Query: 245 RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA-DTIVIGI 303
           + F  S+    E   ++N +  V  A +  ++  SD  ++ + L DG   +  D ++  +
Sbjct: 214 K-FDESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLS-IHLSDGRIYEHFDHVIYCV 271
Query: 304 GAKPTVS--PFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVD 361
           G  P       E++ + ++   I VD   RT +  I+A+GD       M  ++  +E ++
Sbjct: 272 GRSPDTENLKLEKLNVETNNNYIVVDENQRTSVNNIYAVGDCC-----MVKKSKEIEDLN 326

>pdb|1LVL|A Chain A, The Refined Structure Of Pseudomonas Putida Lipoamide Dehydrogenase Complexed With Nad+ At 2.45 Angstroms Resolution Length = 458

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 69/150 (46%), Gaps = 13/150 (8%)
Query: 217 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLE 276
           YIG+E+  A        +++     +L   +   L     +  ++ G+    G S++  E
Sbjct: 181 YIGLELGIAYRKLGAQVSVVEARERILPT-YDSELTAPVAESLKKLGIALHLGHSVEGYE 239
Query: 277 AG----SDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGG--IQVDGQF 330
            G    +DG+   ++LE      AD +++ +G +P    F    L+  + G  I +D + 
Sbjct: 240 NGCLLANDGKGGQLRLE------ADRVLVAVGRRPRTKGFNLECLDLKMNGAAIAIDERC 293
Query: 331 RTRMPGIFAIGDVAAFPLKMYDRTARVEHV 360
           +T M  ++AIGDVA  P+  +   A+ E V
Sbjct: 294 QTSMHNVWAIGDVAGEPMLAHRAMAQGEMV 323

>pdb|4B1B|A Chain A, Crystal Structure Of Plasmodium Falciparum Oxidised Thioredoxin Reductase At 2.9 Angstrom Length = 542

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 84/203 (41%), Gaps = 24/203 (11%)
Query: 147 DIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK 206
           D+ K+  +T      KY  +++ATGC     P+ + G        ++++     I SL+K
Sbjct: 177 DLSKEETVTG-----KY--ILIATGCRP-HIPDDVEG-------AKELSITSDDIFSLKK 221
Query: 207 AK-KXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK 265
              K       Y+ +E +        D T+      ++ R F    A + +   ++ GV 
Sbjct: 222 DPGKTLVVGASYVALECSGFLNSLGYDVTVAVRS--IVLRGFDQQCAVKVKLYMEEQGVM 279
Query: 266 FVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE----RVGLNSSV 321
           F  G   K L    D  +  V+  D ++   DT++  IG K  +         + +N S 
Sbjct: 280 FKNGILPKKLTKMDDKIL--VEFSDKTSELYDTVLYAIGRKGDIDGLNLESLNMNVNKSN 337
Query: 322 GGIQVDGQFRTRMPGIFAIGDVA 344
             I  D    T +P IFA+GDVA
Sbjct: 338 NKIIADHLSCTNIPSIFAVGDVA 360

>pdb|2R9Z|A Chain A, Glutathione Amide Reductase From Chromatium Gracile Length = 463

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/151 (22%), Positives = 70/151 (46%), Gaps = 7/151 (4%)
Query: 197 ADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE 256
           +D   +  ++ K+       YIG+E+A     +  + T++  E+ LL + F P L+    
Sbjct: 156 SDGFFALQQQPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQ-FDPLLSATLA 214
Query: 257 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA-DTIVIGIGAKPTVSPF--E 313
           +     G++     ++  LE   D +   +  +DG+ ++  D+++  +G  P       E
Sbjct: 215 ENMHAQGIETHLEFAVAALE--RDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNTRDLGLE 272
Query: 314 RVGLN-SSVGGIQVDGQFRTRMPGIFAIGDV 343
             G+   S G +  D    T +PG++A+GD+
Sbjct: 273 AAGIEVQSNGMVPTDAYQNTNVPGVYALGDI 303

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	488
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	1e-108
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	1e-104
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	1e-102
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	1e-101
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	1e-101
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	1e-101
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	7e-67
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	2e-61
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	7e-05
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	1e-53
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	4e-48
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	2e-47
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	9e-46
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	3e-45
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	9e-45
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	7e-44
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	7e-44
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	1e-43
1yqz_A	438	Coenzyme A disulfide reductase; oxidoreductase; HE	3e-42
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	2e-40
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	1e-26
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	1e-26
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	2e-26
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	5e-26
4dna_A	463	Probable glutathione reductase; structural genomic	1e-25
1fec_A	490	Trypanothione reductase; redox-active center, oxid	2e-25
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	1e-24
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	9e-24
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	2e-23
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	3e-05
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	5e-23
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	1e-07
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	2e-22
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	2e-22
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	4e-22
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	9e-22
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	1e-21
4fk1_A	304	Putative thioredoxin reductase; structural genomic	2e-21
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	4e-21
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	4e-07
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	8e-21
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	2e-20
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	2e-20
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	4e-20
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	5e-19
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	7e-19
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	1e-18
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	7e-18
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	1e-17
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	2e-17
1ojt_A	482	Surface protein; redox-active center, glycolysis,	3e-17
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	3e-17
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	7e-17
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	1e-16
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	2e-16
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	3e-16
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	3e-16
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	7e-16
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	2e-15
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	2e-15
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	3e-15
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	7e-15
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	1e-14
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	3e-14
1fcd_A	401	Flavocytochrome C sulfide dehydrogenase (flavin- b	1e-13
1fcd_A	401	Flavocytochrome C sulfide dehydrogenase (flavin- b	9e-04
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	5e-13
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	1e-11
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	4e-11
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	1e-10
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	9e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
3r9u_A	315	Thioredoxin reductase; structural genomics, center	1e-08
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	4e-08
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	4e-07
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	1e-06
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	1e-06
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	5e-06
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	5e-06
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	3e-04
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	3e-04
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	4e-04

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* Length = 493

 Score =  328 bits (843), Expect = e-108
 Identities = 103/436 (23%), Positives = 177/436 (40%), Gaps = 41/436 (9%)

Query: 50  ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPA 109
            +  F+++GGG AA  AAR+         R+ IVS++   PY RP L+K         P 
Sbjct: 10  SHVPFLLIGGGTAAFAAARSIRARD-PGARVLIVSEDPELPYMRPPLSKELW--FSDDPN 66

Query: 110 RLPGFHTCVGSGGER----QTPEWY---------KEKGIEMIYQDPVTSIDIEKQTLITN 156
                     +G ER    Q P +Y         +  G+ ++    V  +D+    +  N
Sbjct: 67  VTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLN 126

Query: 157 SGKLLKYGSLIVATGCTASRFP--EKIGGYLPG-VHYIRDVADADALISSLEKAKKVVVV 213
            G  + Y   ++ATG T       ++ G  +       R + D  +L     + K + ++
Sbjct: 127 DGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISREVKSITII 186

Query: 214 GGGYIGMEVAAA----AVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG 269
           GGG++G E+A A    A     +   +FPE   + ++    L+    +  ++ GVK +  
Sbjct: 187 GGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPN 246

Query: 270 ASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL--NSSVGGIQVD 327
           A ++++          +KL+DG  ++ D IV  +G +P V   +  GL  +S  GG +V+
Sbjct: 247 AIVQSVGV--SSGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVN 304

Query: 328 GQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPY 387
            + + R   I+  GD A F      R  RVEH DHA  S +   + +  A    Y +   
Sbjct: 305 AELQAR-SNIWVAGDAACFYDIKLGRR-RVEHHDHAVVSGRLAGENMTGAAKP-YWHQSM 361

Query: 388 FYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIA-----TFWIDSGKLKGVLVESG 442
           F+S +   +     V ++  G        +G F    A     +    SG       E+ 
Sbjct: 362 FWSDLG-PD-----VGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETE 415

Query: 443 SPEEFQLLPTLARSQP 458
           S      +P    + P
Sbjct: 416 SEASEITIPPSTPAVP 431

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* Length = 431

 Score =  318 bits (816), Expect = e-104
 Identities = 123/446 (27%), Positives = 199/446 (44%), Gaps = 30/446 (6%)

Query: 49  NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKP 108
           N N   VIVG G A    A      G  +G + +V      P+  P L+K YL    K  
Sbjct: 2   NANDNVVIVGTGLAGVEVAFGLRASG-WEGNIRLVGDATVIPHHLPPLSKAYL--AGKAT 58

Query: 109 ARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIV 168
           A      T          P+ Y  + I+++    VT+I+ ++Q +I + G+ L Y  L++
Sbjct: 59  AESLYLRT----------PDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVL 108

Query: 169 ATGCTASRFPEKIG--GYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAA 226
           ATG      P   G  G      Y+R + DA+ +   L    ++VV+GGGYIG+EVAA A
Sbjct: 109 ATGGRPRPLPVASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATA 168

Query: 227 VGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLE-AGSDGRVAA 285
           +   +  T++     +L+R+  P ++  YE L+++ GV    G  +   E +    +V A
Sbjct: 169 IKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTA 228

Query: 286 VKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 345
           V  EDG+ + AD ++ GIG  P        GL     GI ++   +T  P I A+GD A 
Sbjct: 229 VLCEDGTRLPADLVIAGIGLIPNCELASAAGLQVD-NGIVINEHMQTSDPLIMAVGDCAR 287

Query: 346 FPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQ 405
           F  ++YDR  R+E V +A + A+     L        +  P+F+S  +E       +  +
Sbjct: 288 FHSQLYDRWVRIESVPNALEQARKIAAILCGKVP-RDEAAPWFWSDQYE-----IGL--K 339

Query: 406 FFGDNVG--ETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDK 462
             G + G    I  G+   P  + F++   ++  V      P EF     +   +  V+ 
Sbjct: 340 MVGLSEGYDRIIVRGSLAQPDFSVFYLQGDRVLAV-DTVNRPVEFNQSKQIITDRLPVEP 398

Query: 463 AKLQQAS-SVEEALEIARAALPVEAA 487
             L   S  ++E +  A+A L    A
Sbjct: 399 NLLGDESVPLKEIIAAAKAELSSAPA 424

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} Length = 404

 Score =  311 bits (798), Expect = e-102
 Identities = 112/418 (26%), Positives = 182/418 (43%), Gaps = 29/418 (6%)

Query: 51  NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPAR 110
           N   +I G G+A    A +  +     GR+ +++ E + PY+RP L+K YL         
Sbjct: 1   NDTVLIAGAGHAGFQVAVSLRQAK-YPGRIALINDEKHLPYQRPPLSKAYL--KSGGDPN 57

Query: 111 LPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVAT 170
              F             ++++++ IE+I  D + SID E + L+  SG  ++YG L++AT
Sbjct: 58  SLMFRP----------EKFFQDQAIELI-SDRMVSIDREGRKLLLASGTAIEYGHLVLAT 106

Query: 171 GCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWK 230
           G             LP V Y+R + +++ L   +   K VVV+G G+IG+E AA A    
Sbjct: 107 GARNRMLDVP-NASLPDVLYLRTLDESEVLRQRMPDKKHVVVIGAGFIGLEFAATARAKG 165

Query: 231 LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED 290
           L+  ++     ++ R+ TP ++  +   +   G++   G     +      RV  V L D
Sbjct: 166 LEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIA-AEGDRVTGVVLSD 224

Query: 291 GSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKM 350
           G+T+  D +V+G+G  P V      GL ++  GI VD Q  T  P I AIGD A F    
Sbjct: 225 GNTLPCDLVVVGVGVIPNVEIAAAAGLPTA-AGIIVDQQLLTSDPHISAIGDCALFESVR 283

Query: 351 YDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDN 410
           +  T RVE V +A   A+     L       YD  P+F+S   +      K+  Q  G  
Sbjct: 284 FGETMRVESVQNATDQARCVAARLT-GDAKPYDGYPWFWSDQGD-----DKL--QIVGLT 335

Query: 411 VG--ETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKL 465
            G  + +  G+      + F   +GKL G+        +      +      V   + 
Sbjct: 336 AGFDQVVIRGSVAERSFSAFCYKAGKLIGI-ESVNRAADHVFGRKILPLDKSVTPEQA 392

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* Length = 408

 Score =  307 bits (789), Expect = e-101
 Identities = 102/435 (23%), Positives = 174/435 (40%), Gaps = 38/435 (8%)

Query: 51  NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPAR 110
               V++G G A+        + G   G + +V  EA  PY+RP L+K ++         
Sbjct: 7   KAPVVVLGAGLASVSFVAELRQAG-YQGLITVVGDEAERPYDRPPLSKDFM--------- 56

Query: 111 LPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVAT 170
                       E+   +  +   +E +      S D +  T+  + G+ L YG+L++AT
Sbjct: 57  -------AHGDAEKIRLDCKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLAT 109

Query: 171 GCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWK 230
           G      P  + G    VH +R + DA  + + L    ++++VGGG IG+E+AA A    
Sbjct: 110 GAAPRALPT-LQGATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAG 168

Query: 231 LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED 290
           +  +++  +  L+ R    +LA    + +   GV      S+      +      V L+D
Sbjct: 169 VHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSV------TGSVDGVVLLDD 222

Query: 291 GSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKM 350
           G+ I AD +V+GIG     +     GL     GI VD   RT  P ++A+GDV      +
Sbjct: 223 GTRIAADMVVVGIGVLANDALARAAGLACD-DGIFVDAYGRTTCPDVYALGDVTRQRNPL 281

Query: 351 YDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDN 410
             R  R+E   +A+       + L+      Y  LP+++S          ++  Q  G  
Sbjct: 282 SGRFERIETWSNAQNQGIAVARHLVDPTAPGYAELPWYWSDQGA-----LRI--QVAGLA 334

Query: 411 VG-ETIEIGNFDP---KIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQ 466
            G E I  G       K     +  G++ G      +  +F  L  L       D+A L 
Sbjct: 335 SGDEEIVRGEVSLDAPKFTLIELQKGRIVGA-TCVNNARDFAPLRRLLAVGAKPDRAALA 393

Query: 467 QAS-SVEEALEIARA 480
             +  + +      A
Sbjct: 394 DPATDLRKLAAAVAA 408

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} Length = 415

 Score =  307 bits (789), Expect = e-101
 Identities = 120/426 (28%), Positives = 200/426 (46%), Gaps = 30/426 (7%)

Query: 45  SSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPL 104
           S    E  + VIVG G+    AA    ++G  +GR+ ++ +E   PYERP L+K YL   
Sbjct: 3   SEVQAERADVVIVGAGHGGAQAAIALRQNG-FEGRVLVIGREPEIPYERPPLSKEYL--A 59

Query: 105 DKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYG 164
            +K                    +++++K +EM     V S+D    T+    G  ++YG
Sbjct: 60  REKTFERICIRP----------AQFWEDKAVEMKLGAEVVSLDPAAHTVKLGDGSAIEYG 109

Query: 165 SLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK-AKKVVVVGGGYIGMEVA 223
            LI ATG    R    +G  L GVH +R   DAD L++ L+  AK  VV+GGGYIG+E A
Sbjct: 110 KLIWATGGDPRRLSC-VGADLAGVHAVRTKEDADRLMAELDAGAKNAVVIGGGYIGLEAA 168

Query: 224 AAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV 283
           A    + ++ T++     +L R+   +L++ Y+  ++ +GV    GA++  +E G   +V
Sbjct: 169 AVLTKFGVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIE-GDGTKV 227

Query: 284 AAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDV 343
             V+++DGS I AD +++GIG  P V      G +    G+ VD   RT +  ++AIGD 
Sbjct: 228 TGVRMQDGSVIPADIVIVGIGIVPCVGALISAGASGG-NGVDVDEFCRTSLTDVYAIGDC 286

Query: 344 AAFPLKMYD-RTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKV 402
           AA      D    R+E V +A   A    K +  A    Y   P+F+S  ++      K+
Sbjct: 287 AAHANDFADGAVIRLESVQNANDMATAAAKDICGAPV-PYKATPWFWSNQYD-----LKL 340

Query: 403 WWQFFGDNVG--ETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPF 459
             Q  G + G    +  G+      +  ++  GK+  +       +++     L  ++  
Sbjct: 341 --QTVGLSTGHDNAVLRGDPATRSFSVVYLKGGKVVAL-DCVNMVKDYVQGKKLVEARAQ 397

Query: 460 VDKAKL 465
           +   +L
Sbjct: 398 IAPEQL 403

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} Length = 410

 Score =  307 bits (789), Expect = e-101
 Identities = 109/415 (26%), Positives = 185/415 (44%), Gaps = 31/415 (7%)

Query: 54  FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPG 113
             I+G G      A+     G  +GR+ ++  E + PY+RP+L+K  L    ++P  L  
Sbjct: 5   VAIIGNGVGGFTTAQALRAEG-FEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPIL-- 61

Query: 114 FHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCT 173
                         +WY E  I+M+    VT++D++ +T+  + G  L   ++++ATG  
Sbjct: 62  -----------AEADWYGEARIDMLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSR 110

Query: 174 ASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDT 233
           A       G  LPGV  +R   D   L  S   A ++++VGGG IG EVA  A    L  
Sbjct: 111 ARTMALP-GSQLPGVVTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVATTARKLGLSV 169

Query: 234 TIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST 293
           TI+   + LL R+    +      L  + GV+   G  +       +G++  V   DG +
Sbjct: 170 TILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSG--EGQLEQVMASDGRS 227

Query: 294 IDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR 353
             AD+ +I +GA+P      + GL     G+ VD    T   G+FA+GDVA++PL+   R
Sbjct: 228 FVADSALICVGAEPADQLARQAGLACD-RGVIVDHCGATLAKGVFAVGDVASWPLRAGGR 286

Query: 354 TARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG- 412
              +E   +A++ A     A+L         LP  ++ +        ++  Q  GD  G 
Sbjct: 287 R-SLETYMNAQRQAAAVAAAILGKNVS-APQLPVSWTEIAG-----HRM--QMAGDIEGP 337

Query: 413 -ETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKL 465
            + +  G         F +   +++ V V   +P +F L   L  ++  ++ A+L
Sbjct: 338 GDFVSRGMPGSGAALLFRLQERRIQAV-VAVDAPRDFALATRLVEARAAIEPARL 391

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* Length = 384

 Score =  218 bits (559), Expect = 7e-67
 Identities = 75/340 (22%), Positives = 130/340 (38%), Gaps = 29/340 (8%)

Query: 49  NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKP 108
           +E    VI+G G A    AR + +    +  L +++ +    Y +P L+ G+    +K  
Sbjct: 2   SERAPLVIIGTGLAGYNLAREWRKLD-GETPLLMITADDGRSYSKPMLSTGFS--KNKDA 58

Query: 109 ARLPGFHTCVGSGGERQTPE-WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLI 167
             L               P    ++    ++    VT ID   Q +     ++ +Y  L+
Sbjct: 59  DGL-----------AMAEPGAMAEQLNARILTHTRVTGIDPGHQRIWIGEEEV-RYRDLV 106

Query: 168 VATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAV 227
           +A G    R P + G     ++ I D+ D      +    ++V+++G G IG E A    
Sbjct: 107 LAWGAEPIRVPVE-GDAQDALYPINDLEDYARFRQAAAGKRRVLLLGAGLIGCEFANDLS 165

Query: 228 GWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK 287
                  ++ P   ++  L  P+ A+  +   +  GV+F  G  + +L+    G      
Sbjct: 166 SGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKK--AGEGLEAH 223

Query: 288 LEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVG-GIQVDGQFRTRMPGIFAIGDVAAF 346
           L DG  I  D +V  +G +P        GL  +V  GI VD   RT    I+A+GD A  
Sbjct: 224 LSDGEVIPCDLVVSAVGLRPRTELAFAAGL--AVNRGIVVDRSLRTSHANIYALGDCAEV 281

Query: 347 PLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLP 386
                       +V      A+   + L    +    Y P
Sbjct: 282 DGLNL------LYVMPLMACARALAQTLAGNPS-QVAYGP 314

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} Length = 385

 Score =  204 bits (522), Expect = 2e-61
 Identities = 76/424 (17%), Positives = 147/424 (34%), Gaps = 58/424 (13%)

Query: 48  ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKK 107
            +++ + +I+G G A   AA+  +        + +++ E Y PY RP L    +   +K 
Sbjct: 6   HHKSTKILILGAGPAGFSAAKAALGK---CDDITMINSEKYLPYYRPRLN--EIIAKNKS 60

Query: 108 PARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLI 167
              +                +WY++  I++I  +  TSID   + +   SG+ +KY  LI
Sbjct: 61  IDDIL-IKK----------NDWYEKNNIKVITSEFATSIDPNNKLVTLKSGEKIKYEKLI 109

Query: 168 VATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAV 227
           +A+G  A++    +      +  +    DA  +    +   K  ++GGG +G+E+A A +
Sbjct: 110 IASGSIANKIK--VPH-ADEIFSLYSYDDALKIKDECKNKGKAFIIGGGILGIELAQAII 166

Query: 228 GWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK 287
                 +I     + L+R          +    + G+K    ++ +              
Sbjct: 167 DSGTPASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNFE-------------- 212

Query: 288 LEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFP 347
            E G  I +  ++  +G KP +   +   + S   GI V+    T +  I+A GDVA F 
Sbjct: 213 -EMGDLIRSSCVITAVGVKPNLDFIKDTEIASK-RGILVNDHMETSIKDIYACGDVAEFY 270

Query: 348 LKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYD-YLPYFYSRVFEYE-GSPRKVWWQ 405
            K                +  +        +  +Y   +P    +V      S       
Sbjct: 271 GKNPGLINIA--NKQGEVAGLN-----ACGEDASYSEIIPSPILKVSGISIIS------- 316

Query: 406 FFGDNVGETIEIGNFDPKIATF---WIDSGKLKG-VLVESGSPEEFQLLPTLARSQPFVD 461
             GD             +   +    +   K+    ++  G       L     S    D
Sbjct: 317 -CGDIENNKPSKVFRSTQEDKYIVCMLKENKIDAAAVI--GDVSLGTKLKKAIDSSKSFD 373

Query: 462 KAKL 465
               
Sbjct: 374 NISS 377

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} Length = 385

 Score = 43.7 bits (104), Expect = 7e-05
 Identities = 23/123 (18%), Positives = 49/123 (39%), Gaps = 15/123 (12%)

Query: 202 SSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH------LLQRLFT-----PS 250
               K+ K++++G G  G   A AA+G   D T+I  E +       L  +         
Sbjct: 4   HHHHKSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKSIDD 63

Query: 251 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 310
           +  +    Y++N +K +      +++   + ++  V L+ G  I  + ++I  G+     
Sbjct: 64  ILIKKNDWYEKNNIKVITSEFATSIDP--NNKL--VTLKSGEKIKYEKLIIASGSIANKI 119

Query: 311 PFE 313
              
Sbjct: 120 KVP 122

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 367

 Score =  183 bits (467), Expect = 1e-53
 Identities = 74/298 (24%), Positives = 128/298 (42%), Gaps = 33/298 (11%)

Query: 55  VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGF 114
           VIVG G      A+   +       + ++ KE    Y +P L+  +         RL   
Sbjct: 12  VIVGNGPGGFELAKQLSQ----TYEVTVIDKEPVPYYSKPMLS--HYIAGFIPRNRL--- 62

Query: 115 HTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTA 174
                      + +WY+++GIE+   +    ID  ++ +IT  G++  Y +L++ATG  A
Sbjct: 63  --------FPYSLDWYRKRGIEIRLAEEAKLIDRGRKVVITEKGEV-PYDTLVLATGARA 113

Query: 175 SRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT 234
                 I G    +  +R + DAD +  S+E + + +++GGG+IG+E+A           
Sbjct: 114 REPQ--IKG-KEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVK 170

Query: 235 IIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTI 294
           +I      L       L+   + + ++ GVKF   + +   EA  +G      L +   I
Sbjct: 171 LIHRGAMFLG--LDEELSNMIKDMLEETGVKFFLNSELL--EANEEGV-----LTNSGFI 221

Query: 295 DADTIVIGIGAKPTVSPFERVGLNSSVG-GIQVDGQFRTRMPGIFAIGDVAAFPLKMY 351
           +    +  IG  P V    R G+    G GI +D  FRT    ++AIGD A +   + 
Sbjct: 222 EGKVKICAIGIVPNVDLARRSGI--HTGRGILIDDNFRTSAKDVYAIGDCAEYSGIIA 277

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} Length = 452

 Score =  171 bits (435), Expect = 4e-48
 Identities = 63/229 (27%), Positives = 95/229 (41%), Gaps = 14/229 (6%)

Query: 125 QTPEWYKEKGIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASRFPE 179
            +PE     G  +  +  VT++D E +T     LITN  K   Y  LI+ TG   +  P 
Sbjct: 63  SSPEELSNLGANVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTV-PP 121

Query: 180 KIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 239
             G     V+  ++  DA  L     KAK + ++G GYIG E+A A      +  +I   
Sbjct: 122 IPGIDSSRVYLCKNYNDAKKLFEEAPKAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGH 181

Query: 240 NHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTI 299
             +L + F         + Y+ +GV  V G+ +   E   D  +      DG  I +D  
Sbjct: 182 ERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFE-EVDDEIITK-TLDGKEIKSDIA 239

Query: 300 VIGIGAKPTVSPFE---RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 345
           ++ IG +P     +    +  N   G I  D    +    IFA GD AA
Sbjct: 240 ILCIGFRPNTELLKGKVAMLDN---GAIITDEYMHSSNRDIFAAGDSAA 285

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} Length = 452

 Score =  169 bits (430), Expect = 2e-47
 Identities = 48/227 (21%), Positives = 93/227 (40%), Gaps = 13/227 (5%)

Query: 125 QTPEWYKEKGIEMIYQDPVTSIDIEKQTLI---TNSGKLLKYGSLIVATGCTASRFPEKI 181
            T E  + + I+++    V ++D+E Q +        +   Y  LI+ATG +      + 
Sbjct: 63  ITEEELRRQKIQLLLNREVVAMDVENQLIAWTRKEEQQWYSYDKLILATGASQFSTQIR- 121

Query: 182 GGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH 241
           G     +   + ++ A A +  LE ++ V V+G G IGME     V  K    +     +
Sbjct: 122 GSQTEKLLKYKFLSGALAAVPLLENSQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLEN 181

Query: 242 LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 301
           LL + F   +    ++  ++  V F    ++  +E         +       I  D+ + 
Sbjct: 182 LLPKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIE--ETANGIVL-ETSEQEISCDSGIF 238

Query: 302 GIGAKPTVSPFE---RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 345
            +   P ++  +   +  L+     I VD   +T +P +FAIGD  +
Sbjct: 239 ALNLHPQLAYLDKKIQRNLD---QTIAVDAYLQTSVPNVFAIGDCIS 282

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* Length = 447

 Score =  164 bits (418), Expect = 9e-46
 Identities = 55/231 (23%), Positives = 95/231 (41%), Gaps = 17/231 (7%)

Query: 125 QTPEWYKEKGIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASRFPE 179
            T E  + +G+ +     +T+I  ++       L++   ++  Y  LI++ G        
Sbjct: 61  MTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDI 120

Query: 180 KIGGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIF 237
             G  L  ++ +R    A  L       +   VVV+G GYIG+E A A        T+I 
Sbjct: 121 P-GKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVID 179

Query: 238 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 297
             +  L             +  + N +    G +++  E   DGRV  V + D +  DAD
Sbjct: 180 ILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYE--GDGRVQKV-VTDKNAYDAD 236

Query: 298 TIVIGIGAKPTVSPFE---RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 345
            +V+ +G +P  +  +    +  N   G I+ D   RT  P +FA+GD   
Sbjct: 237 LVVVAVGVRPNTAWLKGTLELHPN---GLIKTDEYMRTSEPDVFAVGDATL 284

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} Length = 472

 Score =  163 bits (415), Expect = 3e-45
 Identities = 70/232 (30%), Positives = 116/232 (50%), Gaps = 15/232 (6%)

Query: 125 QTPEWYKEK-GIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASRFP 178
           + PE+++    +E + +    +ID    T     L T   + LKY  L++A G  A+R P
Sbjct: 70  RDPEFFRINKDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKANRPP 129

Query: 179 EKIGGY-LPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVG-WKLDTT 234
             + G  L GV  + ++ +A+ +  ++   +  K V+VGGG+IG+E+A +    W +DTT
Sbjct: 130 --VEGMDLAGVTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTT 187

Query: 235 IIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTI 294
           ++   + ++    + SL+Q      ++N V    G  +  LE G +G+VA V + D  T+
Sbjct: 188 VVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLE-GENGKVARV-ITDKRTL 245

Query: 295 DADTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAA 345
           DAD +++  G  P        GL     G I VD + RT  P IFA GD   
Sbjct: 246 DADLVILAAGVSPNTQLARDAGLELDPRGAIIVDTRMRTSDPDIFAGGDCVT 297

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A* Length = 490

 Score =  162 bits (413), Expect = 9e-45
 Identities = 56/239 (23%), Positives = 106/239 (44%), Gaps = 24/239 (10%)

Query: 125 QTPEWYKEKGIEMIYQDPVTSIDIEKQT---LITNSGKLLKYGSLIVATGCTASRFP--- 178
              E  +  G ++  + PV SID + +T   L+     +  Y  LI ATG      P   
Sbjct: 97  SDKEELESLGAKVYMESPVQSIDYDAKTVTALVDGKNHVETYDKLIFATGSQPILPPIKG 156

Query: 179 -------EKIGGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGW 229
                   +    L  + +++   ++  +I+ LE    K+V VVG GYIG+E+A A    
Sbjct: 157 AEIKEGSLEFEATLENLQFVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVELAEAFQRK 216

Query: 230 KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE 289
             +  +I   +  L   +   L     +  +++G++   G ++K +    +G+V  + + 
Sbjct: 217 GKEVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGETVKEVA--GNGKVEKI-IT 273

Query: 290 DGSTIDADTIVIGIGAKPTVSPFE---RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 345
           D +  D D +++ +G +P  +       +  N   G   V+ +  T +PG++AIGD A 
Sbjct: 274 DKNEYDVDMVILAVGFRPNTTLGNGKIDLFRN---GAFLVNKRQETSIPGVYAIGDCAT 329

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588

 Score =  162 bits (411), Expect = 7e-44
 Identities = 57/229 (24%), Positives = 105/229 (45%), Gaps = 14/229 (6%)

Query: 125 QTPEWYKEK-GIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASRFP 178
           QT E   ++  +++     V  I+ E++T     + TN      Y  LI++ G       
Sbjct: 97  QTVERMSKRFNLDIRVLSEVVKINKEEKTITIKNVTTNETYNEAYDVLILSPGAKPIVPS 156

Query: 179 EKIGGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTII 236
                    +  +R+V D D + + ++  K +   V+GGG+IG+E+        ++ T++
Sbjct: 157 IPGIEEAKALFTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEMVENLRERGIEVTLV 216

Query: 237 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 296
              N ++       +A    +  + + V+ V    +  LE   +G V  V+L+ GS I  
Sbjct: 217 EMANQVMPP-IDYEMAAYVHEHMKNHDVELVFEDGVDALE--ENGAV--VRLKSGSVIQT 271

Query: 297 DTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVA 344
           D +++ IG +P  S  +  GL     G I+V+ +F+T  P I+AIGD  
Sbjct: 272 DMLILAIGVQPESSLAKGAGLALGVRGTIKVNEKFQTSDPHIYAIGDAI 320

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} Length = 449

 Score =  159 bits (405), Expect = 7e-44
 Identities = 57/226 (25%), Positives = 98/226 (43%), Gaps = 10/226 (4%)

Query: 125 QTPEWYKEK-GIEMIYQDPVTSIDIEKQT-LITNSGKLLKYGSLIVATGCTASRFPEKIG 182
             PE + +K GI++     V  +D            K  ++  L+ A G +    P   G
Sbjct: 63  YPPEVFIKKRGIDLHLNAEVIEVDTGYVRVRENGGEKSYEWDYLVFANGASPQV-PAIEG 121

Query: 183 GYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240
             L GV       DA A+   +E  K + VV++GGGYIG+E+A A      + T+I    
Sbjct: 122 VNLKGVFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGE 181

Query: 241 HLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV 300
            +L+R F   +    E+   +  V          +E   + RV  V + D     A+ ++
Sbjct: 182 RVLRRSFDKEVTDILEEKL-KKHVNLRLQEITMKIE--GEERVEKV-VTDAGEYKAELVI 237

Query: 301 IGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAA 345
           +  G KP +   +++G+     G I  + + +T +  ++A GDVA 
Sbjct: 238 LATGIKPNIELAKQLGVRIGETGAIWTNEKMQTSVENVYAAGDVAE 283

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* Length = 480

 Score =  159 bits (404), Expect = 1e-43
 Identities = 57/230 (24%), Positives = 111/230 (48%), Gaps = 14/230 (6%)

Query: 125 QTPEWYKEK-GIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASRFP 178
           +  + +++K GI+   +  VT +D EK+        T       Y  L++ATG       
Sbjct: 97  RNVKTFRDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPVMPE 156

Query: 179 EKIGGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTII 236
            + G  L GVH ++ + DA+ ++ +LE  K + V ++GGG IG+E+A   V       +I
Sbjct: 157 WE-GRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEMAETFVELGKKVRMI 215

Query: 237 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 296
              +H+   ++   +A+   +   ++ ++ +   ++K  +   + RV AV+  D  T  A
Sbjct: 216 ERNDHIG-TIYDGDMAEYIYKEADKHHIEILTNENVKAFK--GNERVEAVET-DKGTYKA 271

Query: 297 DTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAA 345
           D +++ +G KP     E   +  +  G I+V+   +T +  ++A GD A 
Sbjct: 272 DLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYMQTNVQDVYAAGDCAT 321

>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A {Staphylococcus aureus} Length = 438

 Score =  154 bits (393), Expect = 3e-42
 Identities = 55/230 (23%), Positives = 97/230 (42%), Gaps = 20/230 (8%)

Query: 125 QTPEWYKEK-GIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASRFP 178
            TPE + ++  I +     V +I+ E+QT       TN      Y  LI++ G +     
Sbjct: 62  YTPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGAS----A 117

Query: 179 EKIGGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTII 236
             +G        +R++ D DA+   ++  +  KV+VVG GY+ +EV        L  T+I
Sbjct: 118 NSLGFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLI 177

Query: 237 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 296
              + +  +L    + Q       +  + +     I  +  G++     +  + G     
Sbjct: 178 HRSDKIN-KLMDADMNQPILDELDKREIPYRLNEEINAIN-GNE-----ITFKSGKVEHY 230

Query: 297 DTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAA 345
           D I+ G+G  P     E   +     G I V+ +F T +P I+AIGD+A 
Sbjct: 231 DMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIAT 280

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Length = 565

 Score =  152 bits (386), Expect = 2e-40
 Identities = 56/249 (22%), Positives = 107/249 (42%), Gaps = 32/249 (12%)

Query: 125 QTPEWYKEK-GIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASRFP 178
           QTPE +K +  +E+  +  V +ID   +      L+  S     Y +L+++ G      P
Sbjct: 62  QTPESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVPP 121

Query: 179 EKIGGY-LPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTI 235
             I G   P  H +R++ D D ++ +++    +   VVGGG+IG+E+  +     + TT+
Sbjct: 122 --IPGVDNPLTHSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGIKTTL 179

Query: 236 IFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLE------------------A 277
           +   + ++       +A    Q  +  GV    G ++  +                    
Sbjct: 180 LELADQVMTP-VDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQ 238

Query: 278 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPG 336
              G ++   L +G  ++ D +++ IG +P        GL    +GGI+V+   +T  P 
Sbjct: 239 HIKGHLSLT-LSNGELLETDLLIMAIGVRPETQLARDAGLAIGELGGIKVNAMMQTSDPA 297

Query: 337 IFAIGDVAA 345
           I+A+GD   
Sbjct: 298 IYAVGDAVE 306

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 500

 Score =  111 bits (281), Expect = 1e-26
 Identities = 44/211 (20%), Positives = 84/211 (39%), Gaps = 25/211 (11%)

Query: 167 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKAKKVVVVGGGYIGME 221
           ++A G      P      + G+            ISS     ++++KK+ +VG GYI +E
Sbjct: 146 LIAVGNKPVFPP------VKGIENT---------ISSDEFFNIKESKKIGIVGSGYIAVE 190

Query: 222 VAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG 281
           +        +D+ I    N +L R F  S+    E   ++N +  V  A +  ++  SD 
Sbjct: 191 LINVIKRLGIDSYIFARGNRIL-RKFDESVINVLENDMKKNNINIVTFADVVEIKKVSDK 249

Query: 282 RVAAVKLEDGSTI-DADTIVIGIGAKPTVSPF--ERVGLNSSVGGIQVDGQFRTRMPGIF 338
            ++ + L DG      D ++  +G  P       E++ + ++   I VD   RT +  I+
Sbjct: 250 NLS-IHLSDGRIYEHFDHVIYCVGRSPDTENLKLEKLNVETNNNYIVVDENQRTSVNNIY 308

Query: 339 AIGDVAAFPLKMYDRTARVEHVDHARQSAQH 369
           A+GD              +  + +  +    
Sbjct: 309 AVGDCCMVKKSKEIEDLNLLKLYNEERYLNK 339

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} Length = 484

 Score =  111 bits (280), Expect = 1e-26
 Identities = 52/200 (26%), Positives = 90/200 (45%), Gaps = 28/200 (14%)

Query: 154 ITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA- 207
           ++ +G+ +    +++ATG             + G             ++S     LEK  
Sbjct: 146 LSVTGERISAEKILIATGAKIVSNSA-----IKGSDLC---------LTSNEIFDLEKLP 191

Query: 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 267
           K +V+VGGGYIG+E A    G  + TT++   + +L R F   L Q         G+  +
Sbjct: 192 KSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLIL-RNFDYDLRQLLNDAMVAKGISII 250

Query: 268 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVG--LNSSVGG 323
             A++  +++  +     V L +G TI AD +++  G  P  +    ER G  +N   G 
Sbjct: 251 YEATVSQVQSTENCYN--VVLTNGQTICADRVMLATGRVPNTTGLGLERAGVKVNEF-GA 307

Query: 324 IQVDGQFRTRMPGIFAIGDV 343
           + VD +  T +  I+A+GDV
Sbjct: 308 VVVDEKMTTNVSHIWAVGDV 327

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* Length = 450

 Score =  110 bits (277), Expect = 2e-26
 Identities = 52/187 (27%), Positives = 80/187 (42%), Gaps = 28/187 (14%)

Query: 167 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA-KKVVVVGGGYIGM 220
           ++ATG   S  P+     +PGV Y          I S     L    ++V VVG GYIG+
Sbjct: 136 LIATGGRPSH-PD-----IPGVEYG---------IDSDGFFALPALPERVAVVGAGYIGV 180

Query: 221 EVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD 280
           E+     G    T +    +  L   F P +++   ++    G +    A  K +   +D
Sbjct: 181 ELGGVINGLGAKTHLFEMFDAPL-PSFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTD 239

Query: 281 GRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVG--LNSSVGGIQVDGQFRTRMPG 336
           G +  ++LEDG +   D ++  IG +P       E  G   N   G I VD    T + G
Sbjct: 240 GSLT-LELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEK-GYIVVDKYQNTNIEG 297

Query: 337 IFAIGDV 343
           I+A+GD 
Sbjct: 298 IYAVGDN 304

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* Length = 495

 Score =  109 bits (275), Expect = 5e-26
 Identities = 53/190 (27%), Positives = 86/190 (45%), Gaps = 31/190 (16%)

Query: 167 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA-KKVVVVGGGYIGM 220
           ++ATG      P      +PG+ +          ISS     L +  ++V+ VGGG+I +
Sbjct: 160 LLATGSWPQM-PA-----IPGIEHC---------ISSNEAFYLPEPPRRVLTVGGGFISV 204

Query: 221 EVA---AAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 277
           E A    A        T+ +  N +L R F  ++ +   +    NG++ +   +   +  
Sbjct: 205 EFAGIFNAYKPPGGKVTLCYRNNLIL-RGFDETIREEVTKQLTANGIEIMTNENPAKVSL 263

Query: 278 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVG--LNSSVGGIQVDGQFRTR 333
            +DG    V  E G T+D D +++ IG  P  +      VG  L    GG+QVD   RT 
Sbjct: 264 NTDGSKH-VTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPK-GGVQVDEFSRTN 321

Query: 334 MPGIFAIGDV 343
           +P I+AIGD+
Sbjct: 322 VPNIYAIGDI 331

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} Length = 463

 Score =  107 bits (271), Expect = 1e-25
 Identities = 51/200 (25%), Positives = 86/200 (43%), Gaps = 27/200 (13%)

Query: 154 ITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA- 207
           +  SGK +    +++A G   S   + +    PG             I+S     L    
Sbjct: 125 LLASGKTVTAERIVIAVGGHPSP-HDAL----PGHELC---------ITSNEAFDLPALP 170

Query: 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 267
           + +++ GGGYI +E A    G  + TT+I+    +L   F   + +      ++ G++ +
Sbjct: 171 ESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEIL-SRFDQDMRRGLHAAMEEKGIRIL 229

Query: 268 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVG--LNSSVGG 323
               I+++ A +DGR           I AD +++ +G  P  +    E  G   N   G 
Sbjct: 230 CEDIIQSVSADADGRRV-ATTMKHGEIVADQVMLALGRMPNTNGLGLEAAGVRTNEL-GA 287

Query: 324 IQVDGQFRTRMPGIFAIGDV 343
           I VD   RT  PGI+A+GDV
Sbjct: 288 IIVDAFSRTSTPGIYALGDV 307

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* Length = 490

 Score =  108 bits (272), Expect = 2e-25
 Identities = 47/190 (24%), Positives = 79/190 (41%), Gaps = 31/190 (16%)

Query: 167 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA-KKVVVVGGGYIGM 220
           ++ATG             + G             I+S     L++A K+ + VGGGYI +
Sbjct: 156 LLATGSWPQH-LG-----IEGDDLC---------ITSNEAFYLDEAPKRALCVGGGYISI 200

Query: 221 EVA---AAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 277
           E A    A         + +  + +L R F   L ++  +  + NG+      +   +  
Sbjct: 201 EFAGIFNAYKARGGQVDLAYRGDMIL-RGFDSELRKQLTEQLRANGINVRTHENPAKVTK 259

Query: 278 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVG--LNSSVGGIQVDGQFRTR 333
            +DG    V  E G+  D D +++ IG  P       E+ G  +  + G I+VD   +T 
Sbjct: 260 NADGTRH-VVFESGAEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKN-GAIKVDAYSKTN 317

Query: 334 MPGIFAIGDV 343
           +  I+AIGDV
Sbjct: 318 VDNIYAIGDV 327

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} Length = 479

 Score =  105 bits (264), Expect = 1e-24
 Identities = 57/187 (30%), Positives = 81/187 (43%), Gaps = 26/187 (13%)

Query: 167 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA-KKVVVVGGGYIGM 220
           +VATG  A   PE I    PG               S     LE+  KKVVVVG GYIG+
Sbjct: 153 LVATGGKAIF-PENI----PGFELG---------TDSDGFFRLEEQPKKVVVVGAGYIGI 198

Query: 221 EVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD 280
           E+A    G   +T ++     +L R F   +       Y + G+   K + I  +E   +
Sbjct: 199 ELAGVFHGLGSETHLVIRGETVL-RKFDECIQNTITDHYVKEGINVHKLSKIVKVEKNVE 257

Query: 281 GRVAAVKLEDGSTI-DADTIVIGIGAKPTVS-PFERVG--LNSSVGGIQVDGQFRTRMPG 336
                + + D  +I D D ++  IG K  +    E VG  LNS    I  D    T +P 
Sbjct: 258 TDKLKIHMNDSKSIDDVDELIWTIGRKSHLGMGSENVGIKLNSH-DQIIADEYQNTNVPN 316

Query: 337 IFAIGDV 343
           I+++GDV
Sbjct: 317 IYSLGDV 323

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* Length = 463

 Score =  102 bits (257), Expect = 9e-24
 Identities = 45/187 (24%), Positives = 80/187 (42%), Gaps = 28/187 (14%)

Query: 167 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA-KKVVVVGGGYIGM 220
           ++ATG      P      LPG             I+S     L++  K+V ++G GYIG+
Sbjct: 135 VIATGGRPIV-PR-----LPGAELG---------ITSDGFFALQQQPKRVAIIGAGYIGI 179

Query: 221 EVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD 280
           E+A     +  + T++  E+ LL   F P L+    +     G++     ++  LE  + 
Sbjct: 180 ELAGLLRSFGSEVTVVALEDRLL-FQFDPLLSATLAENMHAQGIETHLEFAVAALERDAQ 238

Query: 281 GRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVG--LNSSVGGIQVDGQFRTRMPG 336
           G    V  +       D+++  +G  P       E  G  + S+ G +  D    T +PG
Sbjct: 239 GTTL-VAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSN-GMVPTDAYQNTNVPG 296

Query: 337 IFAIGDV 343
           ++A+GD+
Sbjct: 297 VYALGDI 303

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* Length = 409

 Score =  100 bits (252), Expect = 2e-23
 Identities = 62/379 (16%), Positives = 113/379 (29%), Gaps = 82/379 (21%)

Query: 55  VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGF 114
           +++GG   A  AA T      +   + +++K  ++ Y RPAL                  
Sbjct: 5   LVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFS-YFRPALP-------------HVAI 50

Query: 115 HTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLIT----NSGKLLKYGSLIVAT 170
                   +    E   EKGI+   +  V  ID +   +       S    +Y  +IV  
Sbjct: 51  GVRDVDELKVDLSEALPEKGIQFQ-EGTVEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGI 109

Query: 171 GCTASRFPEKIGGYLPGVHYIRDVADADAL---ISSLEKAKKVV--------------VV 213
           G       E + G+    + + +   A  L   + S +     +              V 
Sbjct: 110 GAHL--ATELVKGWDKYGYSVCEPEFATKLREKLESFQGGNIAIGSGPFYQGHNPKPKVP 167

Query: 214 GGGYIGMEVAAAAVGWKL---------------DTTIIF--PENHLLQRLFTPSLAQRYE 256
                  + A     +++                  +    P  +L     +P+  +   
Sbjct: 168 ENFVPNADSACEGPVFEMSLMLHGYFKKKGMLDKVHVTVFSPGEYLSD--LSPNSRKAVA 225

Query: 257 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI--GIGAKPTV--SPF 312
            +Y Q G+K V    IK +          +  E G+TI AD  ++       P +  S  
Sbjct: 226 SIYNQLGIKLVHNFKIKEIREH------EIVDEKGNTIPADITILLPPYTGNPALKNSTP 279

Query: 313 ERVGLNSSVGGIQVDGQFR-TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHC- 370
               L    G I  D      +   ++A+GD  +       +         A  + +   
Sbjct: 280 ---DLVDDGGFIPTDLNMVSIKYDNVYAVGDANSMT---VPKLGY-----LAVMTGRIAA 328

Query: 371 --IKALLSAQTHTYDYLPY 387
             +   L   T    Y P 
Sbjct: 329 QHLANRLGVPTKVDKYYPT 347

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* Length = 409

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 24/120 (20%), Positives = 45/120 (37%), Gaps = 28/120 (23%)

Query: 208 KKVVVVGGGYIGMEVAAAA---VGWKLDTTIIFPENHLLQRLFTPSL------------- 251
            KV+V+GG +  +  A      VG K D  +I          F P+L             
Sbjct: 2   TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFS---YFRPALPHVAIGVRDVDEL 58

Query: 252 AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED----GSTIDADTIVIGIGAKP 307
                +   + G++F +G  ++ ++A     +  V         +  + D +++GIGA  
Sbjct: 59  KVDLSEALPEKGIQFQEGT-VEKIDA--KSSM--VYYTKPDGSMAEEEYDYVIVGIGAHL 113

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* Length = 483

 Score = 99.2 bits (248), Expect = 2e-22
 Identities = 48/191 (25%), Positives = 83/191 (43%), Gaps = 32/191 (16%)

Query: 167 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA-KKVVVVGGGYIGM 220
           ++A G    R+P+  G    G             I+S     L++   K +VVG GYIG+
Sbjct: 155 VIAVGGRP-RYPDIPGAVEYG-------------ITSDDLFSLDREPGKTLVVGAGYIGL 200

Query: 221 EVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG 278
           E A     +G   + T++   + +L R F   +A+      ++ G+ F++     ++E  
Sbjct: 201 ECAGFLKGLG--YEPTVMV-RSIVL-RGFDQQMAELVAASMEERGIPFLRKTVPLSVEKQ 256

Query: 279 SDGRVAA----VKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLNSSVGGIQVDGQFRT 332
            DG++      V+  + S    DT++  IG K  V        G+      I VD Q  T
Sbjct: 257 DDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQKDKIPVDSQEAT 316

Query: 333 RMPGIFAIGDV 343
            +  I+A+GD+
Sbjct: 317 NVANIYAVGDI 327

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* Length = 488

 Score = 99.2 bits (248), Expect = 2e-22
 Identities = 50/192 (26%), Positives = 82/192 (42%), Gaps = 31/192 (16%)

Query: 167 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA-KKVVVVGGGYIGM 220
           ++ATG       +     + G          +  I+S     L+++  K +VVG  Y+ +
Sbjct: 152 VIATGGRPRYPTQ-----VKG--------ALEYGITSDDIFWLKESPGKTLVVGASYVAL 198

Query: 221 EVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD 280
           E A    G  LDTT++     L  R F   ++    +  + +G +F+KG    +++    
Sbjct: 199 ECAGFLTGIGLDTTVMMRSIPL--RGFDQQMSSLVTEHMESHGTQFLKGCVPSHIKKLPT 256

Query: 281 GRVAAVKLEDGS-----TIDADTIVIGIGAKPTVSPF--ERVG--LNSSVGGIQVDGQFR 331
            ++  V  ED +     T   DT++  IG  P       E+ G   N     I VD Q  
Sbjct: 257 NQLQ-VTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQEA 315

Query: 332 TRMPGIFAIGDV 343
           T +P I+AIGDV
Sbjct: 316 TSVPHIYAIGDV 327

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... Length = 478

 Score = 98.0 bits (245), Expect = 4e-22
 Identities = 51/209 (24%), Positives = 89/209 (42%), Gaps = 35/209 (16%)

Query: 154 ITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA- 207
           I  SGK      +++ATG   S  P +    +PG             I+S     LE+  
Sbjct: 140 IEVSGKKYTAPHILIATGGMPST-PHESQ--IPGASLG---------ITSDGFFQLEELP 187

Query: 208 KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK 265
            + V+VG GYI +E+A   +A+G    T+++   + +L R F   ++    +  +  GV+
Sbjct: 188 GRSVIVGAGYIAVEMAGILSALG--SKTSLMIRHDKVL-RSFDSMISTNCTEELENAGVE 244

Query: 266 FVKGASIKNLEAGSDGRVAAV-------KLEDGSTIDADTIVIGIGAKPTVSPF--ERVG 316
            +K + +K ++    G   ++               D D ++  IG  P        ++G
Sbjct: 245 VLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLG 304

Query: 317 --LNSSVGGIQVDGQFRTRMPGIFAIGDV 343
              +   G I VD    T + GI+A+GDV
Sbjct: 305 IQTDDK-GHIIVDEFQNTNVKGIYAVGDV 332

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* Length = 523

 Score = 97.4 bits (243), Expect = 9e-22
 Identities = 46/200 (23%), Positives = 87/200 (43%), Gaps = 19/200 (9%)

Query: 157 SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK--AKKVVVVG 214
           +GK+ K  +LI+A G             +PGV+       A  +   L+      VVVVG
Sbjct: 169 AGKVFKAKNLILAVGAGPGTLD------VPGVNAKGVFDHATLVEE-LDYEPGSTVVVVG 221

Query: 215 GGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI 272
           G    +E      A G +  T ++     L   +             ++ G++ + G+++
Sbjct: 222 GSKTAVEYGCFFNATGRR--TVMLVRTEPLK-LIKDNETRAYVLDRMKEQGMEIISGSNV 278

Query: 273 KNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVSPF-ERVGLN-SSVGGIQVD 327
             +E  ++GRV AV          I+ D + +G+G +P  +   + +GL+    G + V+
Sbjct: 279 TRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSAELAKILGLDLGPKGEVLVN 338

Query: 328 GQFRTRMPGIFAIGDVAAFP 347
              +T +P ++A+GD+   P
Sbjct: 339 EYLQTSVPNVYAVGDLIGGP 358

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 Length = 499

 Score = 96.5 bits (241), Expect = 1e-21
 Identities = 50/220 (22%), Positives = 84/220 (38%), Gaps = 45/220 (20%)

Query: 143 VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 202
            T+ D        +         ++VATG +           LP         D + +++
Sbjct: 133 ATAADGSTSEHEADV--------VLVATGASPRI--------LPSAQP-----DGERILT 171

Query: 203 S-----LEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPS---- 250
                 L+     ++VVG G  G E       +G  +  T++  ++H+L     P     
Sbjct: 172 WRQLYDLDALPDHLIVVGSGVTGAEFVDAYTELG--VPVTVVASQDHVL-----PYEDAD 224

Query: 251 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 310
            A   E+ + + GV+  K A   ++     G    V + DG T++    ++ IG+ P  S
Sbjct: 225 AALVLEESFAERGVRLFKNARAASVTRTGAG--VLVTMTDGRTVEGSHALMTIGSVPNTS 282

Query: 311 PF--ERVGLNSSVGG-IQVDGQFRTRMPGIFAIGDVAAFP 347
               ERVG+    G  + VD   RT   GI+A GD     
Sbjct: 283 GLGLERVGIQLGRGNYLTVDRVSRTLATGIYAAGDCTGLL 322

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* Length = 304

 Score = 93.4 bits (233), Expect = 2e-21
 Identities = 50/317 (15%), Positives = 90/317 (28%), Gaps = 69/317 (21%)

Query: 55  VIVGGG----NAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPAR 110
            ++G G    NA+    R       A  ++ +          R  +T+            
Sbjct: 10  AVIGAGPAGLNASLVLGR-------ARKQIALFDNNTN----RNRVTQNS---------- 48

Query: 111 LPGFHTCVG-SGGE-----RQTPEWYKEKGIEMIYQDPVTSIDIEKQ---TLITNSGKLL 161
             GF T  G    E           Y        Y+  V  I  +      ++T      
Sbjct: 49  -HGFITRDGIKPEEFKEIGLNEVMKY---PSVHYYEKTVVMITKQSTGLFEIVTKDHTKY 104

Query: 162 KYGSLIVATGCTASRFPEKIGGYLPGV--HYIRDVA-----DADALISSLEKAKKVVVVG 214
               +++ATG     FP      +P V  +Y + +      D         K + ++++ 
Sbjct: 105 LAERVLLATGMQE-EFPS-----IPNVREYYGKSLFSCPYCDGW-----ELKDQPLIIIS 153

Query: 215 GGYIG-MEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIK 273
                 + +      W  D  I               L+Q          +  +  + I+
Sbjct: 154 ENEDHTLHMTKLVYNWSTDLVIATN---------GNELSQTIMDELSNKNIPVITES-IR 203

Query: 274 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRT 332
            L+ G  G +  V+   G  I+     I           E++G    S G   +D   RT
Sbjct: 204 TLQ-GEGGYLKKVEFHSGLRIERAGGFIVPTFFRPNQFIEQLGCELQSNGTFVIDDFGRT 262

Query: 333 RMPGIFAIGDVAAFPLK 349
               I+  G+       
Sbjct: 263 SEKNIYLAGETTTQGPS 279

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* Length = 437

 Score = 94.4 bits (235), Expect = 4e-21
 Identities = 56/329 (17%), Positives = 95/329 (28%), Gaps = 62/329 (18%)

Query: 55  VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGF 114
           VI+G G     AA    E   +   + ++S   Y     P+                   
Sbjct: 8   VILGAGTGGMPAAYEMKEALGSGHEVTLISANDYF-QFVPSNPW---------------- 50

Query: 115 HTCVGSGG------ERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIV 168
              VG G             + + KGI  I       ID E Q +    G  + Y  L++
Sbjct: 51  ---VGVGWKERDDIAFPIRHYVERKGIHFI-AQSAEQIDAEAQNITLADGNTVHYDYLMI 106

Query: 169 ATGCTASRFPEKIGG---YLPGVHYIRDVADADALISSLEKAKK----VVVVGGGYIGME 221
           ATG   +   E + G   +   V  I  V  A+   +  +   +    +V+         
Sbjct: 107 ATGPKLA--FENVPGSDPHEGPVQSICTVDHAERAFAEYQALLREPGPIVIGAMAGASCF 164

Query: 222 VAAAAVGWKLDT--------------TIIFPENHLLQRL--FTPSLAQRYEQLYQQNGVK 265
             A      + +              T I  E ++                +  ++ G++
Sbjct: 165 GPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTKGLKEEGIE 224

Query: 266 FVKGASIKNLEAGSDGRVAAVKLEDGS-----TIDADTIVIGIGAKPTVSPFERVGLNSS 320
                 +  +E   +        E G       +     ++    K  V     V    +
Sbjct: 225 AYTNCKVTKVED--NKMYVTQVDEKGETIKEMVLPVKFGMMIPAFKG-VPAVAGVEGLCN 281

Query: 321 VGG-IQVDGQFR-TRMPGIFAIGDVAAFP 347
            GG + VD   R  +   IFA G   A P
Sbjct: 282 PGGFVLVDEHQRSKKYANIFAAGIAIAIP 310

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* Length = 437

 Score = 51.3 bits (123), Expect = 4e-07
 Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 24/120 (20%)

Query: 204 LEKAKKVVVVGGGYIGMEVAAA---AVGWKLDTTIIFPENHLLQRLFTPSL--------- 251
           +  +  VV++G G  GM  A     A+G   + T+I   ++     F PS          
Sbjct: 1   MRGSAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYF---QFVPSNPWVGVGWKE 57

Query: 252 ----AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 307
               A       ++ G+ F+   S + ++A  + +   + L DG+T+  D ++I  G K 
Sbjct: 58  RDDIAFPIRHYVERKGIHFIA-QSAEQIDA--EAQ--NITLADGNTVHYDYLMIATGPKL 112

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* Length = 519

 Score = 94.2 bits (235), Expect = 8e-21
 Identities = 53/197 (26%), Positives = 92/197 (46%), Gaps = 39/197 (19%)

Query: 167 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA-KKVVVVGGGYIGM 220
           ++ATG             +PG        D +  ISS     L     K +VVG  Y+ +
Sbjct: 178 LIATGERPRY-LG-----IPG--------DKEYCISSDDLFSLPYCPGKTLVVGASYVAL 223

Query: 221 EVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGA---SIKNL 275
           E A   A +G  LD T++   + LL R F   +A +  +  +++G+KF++      ++ +
Sbjct: 224 ECAGFLAGIG--LDVTVMV-RSILL-RGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQI 279

Query: 276 EAGSDGRVAAVKLEDGST-----IDADTIVIGIGAKPTVSPF--ERVG--LNSSVGGIQV 326
           EAG+ GR+  V  +  ++      + +T+++ IG          E VG  +N   G I V
Sbjct: 280 EAGTPGRLR-VVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPV 338

Query: 327 DGQFRTRMPGIFAIGDV 343
             + +T +P I+AIGD+
Sbjct: 339 TDEEQTNVPYIYAIGDI 355

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} Length = 335

 Score = 91.5 bits (228), Expect = 2e-20
 Identities = 50/235 (21%), Positives = 92/235 (39%), Gaps = 38/235 (16%)

Query: 134 GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG---- 187
                  +   +++ E     + T+ G      ++I+A G  A   P +IG   PG    
Sbjct: 79  NPVYSLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVGAFE-PRRIG--APGEREF 135

Query: 188 ----VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL 243
               V+Y   V           + K+V++VGGG        +AV W L+         L+
Sbjct: 136 EGRGVYYA--VKSKAEF-----QGKRVLIVGGG-------DSAVDWALNLLDTARRITLI 181

Query: 244 QR--LF--TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST-----I 294
            R   F    +  +   + +++  ++ +    ++ +E   D RV    +    T     +
Sbjct: 182 HRRPQFRAHEASVKELMKAHEEGRLEVLTPYELRRVEG--DERVRWAVVFHNQTQEELAL 239

Query: 295 DADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 349
           + D ++I  G    + P    GL      I+VD    T +PG++A GD+  +P K
Sbjct: 240 EVDAVLILAGYITKLGPLANWGLALEKNKIKVDTTMATSIPGVYACGDIVTYPGK 294

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} Length = 466

 Score = 92.6 bits (231), Expect = 2e-20
 Identities = 45/212 (21%), Positives = 83/212 (39%), Gaps = 26/212 (12%)

Query: 143 VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 202
           V + + ++    T          +I+A+G   ++        LPGV Y     D     +
Sbjct: 121 VKTDEGKEIEAETRY--------MIIASGAETAKLR------LPGVEYCLTSDDIFGYKT 166

Query: 203 SLEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY 259
           S  K  + +V++G GYIG+E+A+    +G +    II   +  L  L    +      L 
Sbjct: 167 SFRKLPQDMVIIGAGYIGLEIASIFRLMGVQT--HIIEMLDRALITLEDQDIVN---TLL 221

Query: 260 QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKP-TVSPFERV 315
               +     + +  ++   D     +         +I  +++V+  G +P        +
Sbjct: 222 SILKLNIKFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAAGRRPVIPEGAREI 281

Query: 316 GLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFP 347
           GL+ S  GI VD   +T +P +FA GD     
Sbjct: 282 GLSISKTGIVVDETMKTNIPNVFATGDANGLA 313

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} Length = 360

 Score = 90.8 bits (226), Expect = 4e-20
 Identities = 52/223 (23%), Positives = 88/223 (39%), Gaps = 34/223 (15%)

Query: 146 IDIEKQ-----TLITNSGKLLKYGSLIVATGCTA--SRFPEKIGGY----LPGVHYIRDV 194
               K         TN+G + +  ++++A G  A   R   ++G         V+Y   V
Sbjct: 98  TKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYYA--V 155

Query: 195 ADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--LFT--PS 250
              +       K K+VV+VGGG        +A+ W +          L+ R   F     
Sbjct: 156 KSVEDF-----KGKRVVIVGGG-------DSALDWTVGLIKNAASVTLVHRGHEFQGHGK 203

Query: 251 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS----TIDADTIVIGIGAK 306
            A   E+      +       + ++E  S+G +  V L        T++AD ++I IG K
Sbjct: 204 TAHEVERARANGTIDVYLETEVASIE-ESNGVLTRVHLRSSDGSKWTVEADRLLILIGFK 262

Query: 307 PTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 349
             + P  R  L      + VD   +T + G++A GD+A +P K
Sbjct: 263 SNLGPLARWDLELYENALVVDSHMKTSVDGLYAAGDIAYYPGK 305

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* Length = 598

 Score = 88.9 bits (221), Expect = 5e-19
 Identities = 38/157 (24%), Positives = 66/157 (42%), Gaps = 19/157 (12%)

Query: 203 SLEKA-KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ 261
           SL     K +V+G  Y+ +E A        D T++   + LL R F   +A++     + 
Sbjct: 281 SLPYFPGKTLVIGASYVALECAGFLASLGGDVTVMV-RSILL-RGFDQQMAEKVGDYMEN 338

Query: 262 NGVKFVKGASIKN--------LEAGSDGR-VAAVKLEDGST--IDADTIVIGIGAKPTVS 310
           +GVKF K               E    G  +      DG     + +T++  +G +P +S
Sbjct: 339 HGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLS 398

Query: 311 PF--ERVG--LNSSVGGIQVDGQFRTRMPGIFAIGDV 343
               E VG  L+ + G +      +T +  ++AIGD+
Sbjct: 399 KVLCETVGVKLDKN-GRVVCTDDEQTTVSNVYAIGDI 434

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* Length = 455

 Score = 87.9 bits (219), Expect = 7e-19
 Identities = 52/214 (24%), Positives = 101/214 (47%), Gaps = 29/214 (13%)

Query: 145 SIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS- 203
               E++ L+  +G+ L+   +++ATG              P         D + +++S 
Sbjct: 112 RFLSERKVLVEETGEELEARYILIATGSAPLI--------PPWAQV-----DYERVVTST 158

Query: 204 ----LEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE 256
                 +  K+++VVGGG IG+E+      +G +    ++   + +L       +++  E
Sbjct: 159 EALSFPEVPKRLIVVGGGVIGLELGVVWHRLGAE--VIVLEYMDRILP-TMDLEVSRAAE 215

Query: 257 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FER 314
           +++++ G+    G  +  +   + G  A V+LE G  ++AD +++ +G +P       E 
Sbjct: 216 RVFKKQGLTIRTGVRVTAVVPEAKG--ARVELEGGEVLEADRVLVAVGRRPYTEGLSLEN 273

Query: 315 VGLNSSVGG-IQVDGQFRTRMPGIFAIGDVAAFP 347
            GL++   G I VD   RTR+P I+AIGDV   P
Sbjct: 274 AGLSTDERGRIPVDEHLRTRVPHIYAIGDVVRGP 307

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 458

 Score = 87.2 bits (217), Expect = 1e-18
 Identities = 49/198 (24%), Positives = 92/198 (46%), Gaps = 23/198 (11%)

Query: 157 SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA-DALISSLEKA-KKVVVVG 214
            G+ ++   L++ATG ++          LP +     V  + +AL  + +   + +VVVG
Sbjct: 129 DGQRIQCEHLLLATGSSSVE--------LPMLPLGGPVISSTEAL--APKALPQHLVVVG 178

Query: 215 GGYIGMEVAAAAVGW-KL--DTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGAS 271
           GGYIG+E+  A   + KL    +++     +L   +   L     +  ++ G+    G S
Sbjct: 179 GGYIGLELGIA---YRKLGAQVSVVEARERILP-TYDSELTAPVAESLKKLGIALHLGHS 234

Query: 272 IKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLNSSVGGIQVDGQ 329
           ++  E G    +A         ++AD +++ +G +P    F  E + L  +   I +D +
Sbjct: 235 VEGYENG--CLLANDGKGGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGAAIAIDER 292

Query: 330 FRTRMPGIFAIGDVAAFP 347
            +T M  ++AIGDVA  P
Sbjct: 293 CQTSMHNVWAIGDVAGEP 310

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* Length = 464

 Score = 84.9 bits (211), Expect = 7e-18
 Identities = 49/215 (22%), Positives = 90/215 (41%), Gaps = 33/215 (15%)

Query: 143 VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 202
           V   D   +++  ++         I+ATG +           +PG     +V   +  I 
Sbjct: 123 VDLNDGGTESVTFDN--------AIIATGSSTRL--------VPGTSLSANVVTYEEQIL 166

Query: 203 SLEKAKKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPS----LAQRYE 256
           S E  K +++ G G IGME        G  +D TI+  E   L R   P+    +++  E
Sbjct: 167 SRELPKSIIIAGAGAIGMEFGYVLKNYG--VDVTIV--E--FLPR-ALPNEDADVSKEIE 219

Query: 257 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIGAKPTVSPF--E 313
           + +++ GV  +    ++++  G       V  +  +  + A+ ++  IG  P V  +  +
Sbjct: 220 KQFKKLGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGLD 279

Query: 314 RVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFP 347
           + G+  +    I VD   RT +  I+AIGDV    
Sbjct: 280 KAGVALTDRKAIGVDDYMRTNVGHIYAIGDVNGLL 314

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* Length = 467

 Score = 84.1 bits (209), Expect = 1e-17
 Identities = 41/203 (20%), Positives = 85/203 (41%), Gaps = 23/203 (11%)

Query: 152 TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA-KKV 210
            L     +++ +   +VATG + +  P      +PG+         +AL  + +   +++
Sbjct: 128 RLNEGGERVVMFDRCLVATGASPAVPP------IPGLKESPYWTSTEAL--ASDTIPERL 179

Query: 211 VVVGGGYIGMEVAA--AAVGWKLDTTIIFPE-NHLLQRLFTPSLAQRYEQLYQQNGVKFV 267
            V+G   + +E+A   A +G K+  T++    N L  R   P++ +     ++  G++ +
Sbjct: 180 AVIGSSVVALELAQAFARLGSKV--TVL--ARNTLFFR-EDPAIGEAVTAAFRAEGIEVL 234

Query: 268 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGI 324
           +      +       V  +    G  + AD +++  G  P       +  G+  ++ G I
Sbjct: 235 EHTQASQVAHMDGEFV--LTTTHG-ELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAI 291

Query: 325 QVDGQFRTRMPGIFAIGDVAAFP 347
            +D   RT  P I+A GD    P
Sbjct: 292 VIDQGMRTSNPNIYAAGDCTDQP 314

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 455

 Score = 83.3 bits (207), Expect = 2e-17
 Identities = 62/206 (30%), Positives = 97/206 (47%), Gaps = 33/206 (16%)

Query: 156 NSGKLLKYGSLIVATGCTASRFP-----EKIGGYLPGVHYIRDVADADALISSLEKA-KK 209
           +S +   + + I+ATG      P      +I            +    AL  +L +  K 
Sbjct: 127 DSAQTYTFKNAIIATGSRPIELPNFKFSNRI------------LDSTGAL--NLGEVPKS 172

Query: 210 VVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 267
           +VV+GGGYIG+E+    A  G K+  TI+     +L   F   +A   ++  ++ GV+ V
Sbjct: 173 LVVIGGGYIGIELGTAYANFGTKV--TILEGAGEILS-GFEKQMAAIIKKRLKKKGVEVV 229

Query: 268 KGASIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVSP--FERVGLN-SSV 321
             A  K  E   DG    V  E      TIDAD +++ +G +P       E++G+  ++ 
Sbjct: 230 TNALAKGAEEREDG--VTVTYEANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNR 287

Query: 322 GGIQVDGQFRTRMPGIFAIGDVAAFP 347
           G I+VD Q RT +P IFAIGD+   P
Sbjct: 288 GLIEVDQQCRTSVPNIFAIGDIVPGP 313

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* Length = 482

 Score = 83.4 bits (207), Expect = 3e-17
 Identities = 44/220 (20%), Positives = 93/220 (42%), Gaps = 32/220 (14%)

Query: 143 VTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFP-----EKIGGYLPGVHYIRDVA 195
           V+    +       +G+  ++ + + I+A G   ++ P      +I            + 
Sbjct: 127 VSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVTKLPFIPEDPRI------------ID 174

Query: 196 DADALISSLEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLA 252
            + AL  +L++   K++++GGG IG+E+    + +G +L   ++   + L+Q      L 
Sbjct: 175 SSGAL--ALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRL--DVVEMMDGLMQ-GADRDLV 229

Query: 253 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVS 310
           + +++  +      +       +E   DG     +  +        D +++  G  P   
Sbjct: 230 KVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNGK 289

Query: 311 P--FERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFP 347
               E+ G+  +  G I+VD Q RT +P I+AIGD+   P
Sbjct: 290 LISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQP 329

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* Length = 464

 Score = 82.9 bits (206), Expect = 3e-17
 Identities = 47/206 (22%), Positives = 85/206 (41%), Gaps = 32/206 (15%)

Query: 157 SGKLLKYGSLIVATGCTASRFP-----EKIGGYLPGVHYIRDVADADALISSLEKA--KK 209
            G+     SLI+ATG            E +                 AL   +E+   K+
Sbjct: 126 GGERYGAKSLILATGSEPLELKGFPFGEDV------------WDSTRAL--KVEEGLPKR 171

Query: 210 VVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 267
           ++V+GGG +G+E+      +G ++  T+I     +L     P  A    +  ++ G++  
Sbjct: 172 LLVIGGGAVGLELGQVYRRLGAEV--TLIEYMPEILP-QGDPETAALLRRALEKEGIRVR 228

Query: 268 KGASIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVSP--FERVGLNSSVG 322
                   E   DG    ++  +G     +  D +++ +G KP       E+ G+     
Sbjct: 229 TKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEGLGLEKAGVKVDER 288

Query: 323 G-IQVDGQFRTRMPGIFAIGDVAAFP 347
           G I+V+ +  T +PG++AIGD A  P
Sbjct: 289 GFIRVNARMETSVPGVYAIGDAARPP 314

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* Length = 474

 Score = 81.8 bits (203), Expect = 7e-17
 Identities = 57/221 (25%), Positives = 101/221 (45%), Gaps = 40/221 (18%)

Query: 143 VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 202
            T  D   Q + T +        +++ATG   +          PG+       D D ++S
Sbjct: 129 ATKADGGTQVIDTKN--------ILIATGSEVTP--------FPGITI-----DEDTIVS 167

Query: 203 S-----LEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQR 254
           S     L+K  +K+VV+G G IG+E+ +    +G  +  T +    H+        +++ 
Sbjct: 168 STGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADV--TAVEFLGHVGGVGIDMEISKN 225

Query: 255 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-----TIDADTIVIGIGAKPTV 309
           ++++ Q+ G KF     +      SDG++  V +E  S      I  D +++ IG +P  
Sbjct: 226 FQRILQKQGFKFKLNTKVTGATKKSDGKID-VSIEAASGGKAEVITCDVLLVCIGRRPFT 284

Query: 310 SP--FERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFP 347
                E +G+     G I V+ +F+T++P I+AIGDV A P
Sbjct: 285 KNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDVVAGP 325

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* Length = 332

 Score = 80.3 bits (199), Expect = 1e-16
 Identities = 42/220 (19%), Positives = 80/220 (36%), Gaps = 36/220 (16%)

Query: 147 DIEKQT----LITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG--------VHYIRDV 194
            +EKQ      +  + +     ++I+  G  A + P K+   L          +HY   V
Sbjct: 92  SVEKQADGVFKLVTNEETHYSKTVIITAGNGAFK-PRKLE--LENAEQYEGKNLHYF--V 146

Query: 195 ADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR 254
            D           ++V ++GGG        +AV W L    I  E  ++ R       + 
Sbjct: 147 DDLQKF-----AGRRVAILGGG-------DSAVDWALMLEPIAKEVSIIHRRDKFRAHEH 194

Query: 255 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-----STIDADTIVIGIGAKPTV 309
             +    + V  +       L    + ++  + LE+        ++ D +++  G   ++
Sbjct: 195 SVENLHASKVNVLTPFVPAELIG--EDKIEQLVLEEVKGDRKEILEIDDLIVNYGFVSSL 252

Query: 310 SPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 349
            P +  GL+     I V     T + G FA GD+  +  K
Sbjct: 253 GPIKNWGLDIEKNSIVVKSTMETNIEGFFAAGDICTYEGK 292

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} Length = 491

 Score = 80.7 bits (200), Expect = 2e-16
 Identities = 58/218 (26%), Positives = 103/218 (47%), Gaps = 34/218 (15%)

Query: 143 VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRD----VADAD 198
           VT+   E+Q L   +        +++ATG   +         +PGV    D    V+   
Sbjct: 147 VTNEKGEEQVLEAKN--------VVIATGSDVAG--------IPGVEVAFDEKTIVSSTG 190

Query: 199 ALISSLEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRY 255
           AL  +LEK    ++VVGGG IG+E+ +  A +G K+  T++   + +L       +A++ 
Sbjct: 191 AL--ALEKVPASMIVVGGGVIGLELGSVWARLGAKV--TVVEFLDTILG-GMDGEVAKQL 245

Query: 256 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS---TIDADTIVIGIGAKPTVSP- 311
           +++  + G+ F  GA +       DG     +   G    T+DA+ ++I  G KP+    
Sbjct: 246 QRMLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPSTDGL 305

Query: 312 -FERVGLNSSVGG-IQVDGQFRTRMPGIFAIGDVAAFP 347
              + G+     G +++D  F+T + G++AIGDV   P
Sbjct: 306 GLAKAGVVLDSRGRVEIDRHFQTSIAGVYAIGDVVRGP 343

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 470

 Score = 79.9 bits (198), Expect = 3e-16
 Identities = 53/219 (24%), Positives = 101/219 (46%), Gaps = 38/219 (17%)

Query: 143 VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 202
           V +I+ E   +            +I+ATG             LPGV       D   ++S
Sbjct: 128 VDTIEGENTVVKGKH--------IIIATGSDVKS--------LPGVTI-----DEKKIVS 166

Query: 203 S-----LEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQR 254
           S     L +  KK+VV+G GYIG+E+ +    +G +   T++   + ++       + ++
Sbjct: 167 STGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSE--VTVVEFASEIVP-TMDAEIRKQ 223

Query: 255 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVSP 311
           +++  ++ G+KF     +  ++   DG    V+   G   + I+AD +++  G  P  S 
Sbjct: 224 FQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFTSG 283

Query: 312 --FERVGLNSSVGG-IQVDGQFRTRMPGIFAIGDVAAFP 347
              +++G+ +   G I V+ +F T + G++AIGDV   P
Sbjct: 284 LNLDKIGVETDKLGRILVNERFSTNVSGVYAIGDVIPGP 322

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* Length = 478

 Score = 79.9 bits (198), Expect = 3e-16
 Identities = 52/218 (23%), Positives = 104/218 (47%), Gaps = 36/218 (16%)

Query: 143 VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP------EKIGGYLPGVHYIRDVAD 196
           VT +D  + T       +L   ++IVATG   + FP      EKI            V+ 
Sbjct: 128 VTPVDGLEGT--VKEDHILDVKNIIVATGSEVTPFPGIEIDEEKI------------VSS 173

Query: 197 ADALISSLEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQ 253
             AL  SL++  K++ ++GGG IG+E+ +  + +G K+  T++  +  +        +A+
Sbjct: 174 TGAL--SLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKV--TVVEFQPQIGA-SMDGEVAK 228

Query: 254 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-----TIDADTIVIGIGAKPT 308
             ++  ++ G+ F     + + +   D  V  + +ED        ++A+ +++ +G +P 
Sbjct: 229 ATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPY 288

Query: 309 VSPF--ERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDV 343
           ++    E++GL     G + +D QF ++ P I  +GDV
Sbjct: 289 IAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDV 326

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* Length = 476

 Score = 78.7 bits (195), Expect = 7e-16
 Identities = 49/217 (22%), Positives = 90/217 (41%), Gaps = 36/217 (16%)

Query: 143 VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 202
           VT+ D   Q L T +        +I+A+G             +P         D D ++ 
Sbjct: 131 VTAADGSSQVLDTEN--------VILASGSKPVE--------IPPAPV-----DQDVIVD 169

Query: 203 S-----LEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQR 254
           S      +    K+ V+G G IG+E+ +  A +G ++  T++   +  L       +A+ 
Sbjct: 170 STGALDFQNVPGKLGVIGAGVIGLELGSVWARLGAEV--TVLEAMDKFLP-AVDEQVAKE 226

Query: 255 YEQLYQQNGVKFVKGASIKNLEAGSDG-RVAAVKLEDGSTIDADTIVIGIGAKPTVSP-- 311
            +++  + G+K + GA +   E  +    V  V  E   +   D +++ +G +P  +   
Sbjct: 227 AQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVTTDLL 286

Query: 312 FERVGLNSSVGG-IQVDGQFRTRMPGIFAIGDVAAFP 347
               G+     G I VD    T +PG++AIGDV    
Sbjct: 287 AADSGVTLDERGFIYVDDYCATSVPGVYAIGDVVRGA 323

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} Length = 468

 Score = 77.5 bits (192), Expect = 2e-15
 Identities = 44/215 (20%), Positives = 91/215 (42%), Gaps = 38/215 (17%)

Query: 143 VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 202
           V  +D +++ L T           I+ATG   +         LP + +     D   ++S
Sbjct: 125 VNGLDGKQEMLETKK--------TIIATGSEPTE--------LPFLPF-----DEKVVLS 163

Query: 203 S-----LEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQR 254
           S     L +  K +VV+GGG IG+E+ +  A +G ++  T++              +   
Sbjct: 164 STGALALPRVPKTMVVIGGGVIGLELGSVWARLGAEV--TVVEFAPRCAP-TLDEDVTNA 220

Query: 255 YE-QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVSP 311
               L +   +KF+    +       D     V+ ++G   T+  + +++ +G +P    
Sbjct: 221 LVGALAKNEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRPFTGG 280

Query: 312 F--ERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDV 343
              +++ +  +  G +++   F T +P ++AIGDV
Sbjct: 281 LGLDKINVAKNERGFVKIGDHFETSIPDVYAIGDV 315

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} Length = 297

 Score = 76.0 bits (188), Expect = 2e-15
 Identities = 48/229 (20%), Positives = 69/229 (30%), Gaps = 50/229 (21%)

Query: 134 GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP----G 187
            I  +    VT          +  + G+    G LI+A G T    PE I G        
Sbjct: 71  TIHWVEGR-VTDAKGSFGEFIVEIDGGRRETAGRLILAMGVTD-ELPE-IAGLRERWGSA 127

Query: 188 VHY--------IRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 239
           V +        +                 K+ V+    + +  A     W   T      
Sbjct: 128 VFHCPYCHGYELDQ--------------GKIGVIAASPMAIHHALMLPDWGETTFFT--- 170

Query: 240 NHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTI 299
                 +  P   Q    L    GV  V+   I+ +  G       V L DG +I    +
Sbjct: 171 ----NGIVEPDADQH-ALL-AARGV-RVETTRIREIA-GHAD----VVLADGRSIALAGL 218

Query: 300 VIGIGAKPTVSPFERVGL----NSSVGGIQVDGQFRTRMPGIFAIGDVA 344
                 + TV   E++G           I  D   +T   GIFA GDVA
Sbjct: 219 FTQPKLRITVDWIEKLGCAVEEGPMGSTIVTDPMKQTTARGIFACGDVA 267

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A Length = 521

 Score = 77.0 bits (190), Expect = 3e-15
 Identities = 51/234 (21%), Positives = 87/234 (37%), Gaps = 37/234 (15%)

Query: 134 GIEMIYQDPVTSIDIEKQ-----TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP-- 186
            +++I     + +           + T SG +LK  S+I+ATG         +   +P  
Sbjct: 281 DVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAK----WRNMN--VPGE 334

Query: 187 ------GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240
                 GV Y       D     L K K+V V+GGG  G+E A    G     T++    
Sbjct: 335 DQYRTKGVTY---CPHCDG---PLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLL---- 384

Query: 241 HLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST-----ID 295
                +    + Q  +++     V  +  A    ++ G   +V  ++  D  +     + 
Sbjct: 385 EFAPEMKADQVLQ--DKVRSLKNVDIILNAQTTEVK-GDGSKVVGLEYRDRVSGDIHSVA 441

Query: 296 ADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 349
              I + IG  P     E     + +G I +D +  T + G+FA GD    P K
Sbjct: 442 LAGIFVQIGLLPNTHWLEGALERNRMGEIIIDAKCETSVKGVFAAGDCTTVPYK 495

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} Length = 492

 Score = 75.7 bits (187), Expect = 7e-15
 Identities = 37/218 (16%), Positives = 72/218 (33%), Gaps = 39/218 (17%)

Query: 148 IEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS---- 203
           +++ TL  +    +    +++ATG   +        Y   +           L+++    
Sbjct: 122 LDEHTLQVDDHSQVIAKRIVIATGSRPN--------YPEFLAA-----AGSRLLTNDNLF 168

Query: 204 -LEKA-KKVVVVGGGYIGMEVAAAAVGWK---LDTTIIFPENHLLQRLFTPSLAQRYEQL 258
            L    K V V G G IG+E+  A        +   +      +   L    + +  E+ 
Sbjct: 169 ELNDLPKSVAVFGPGVIGLELGQA---LSRLGVIVKVFGRSGSVAN-LQDEEMKRYAEKT 224

Query: 259 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVSPFERVG 316
           + +    F   A + +     D        + G   T     ++   G K  V   +++G
Sbjct: 225 FNEEF-YFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGRKANV---DKLG 280

Query: 317 L-NSSV-----GGIQVD-GQFRTRMPGIFAIGDVAAFP 347
           L N+S+          D    +T +  IF  GD     
Sbjct: 281 LENTSIELDKKNSPLFDELTLQTSVDHIFVAGDANNTL 318

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} Length = 319

 Score = 73.3 bits (181), Expect = 1e-14
 Identities = 55/241 (22%), Positives = 86/241 (35%), Gaps = 56/241 (23%)

Query: 134 GIEMIYQDPVTSIDIEKQT-LITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP------ 186
                  + V SI   +    I  +        +I+ TG T     + +G  +       
Sbjct: 86  AKIREGVE-VRSIKKTQGGFDIETNDDTYHAKYVIITTGTT----HKHLG--VKGESEYF 138

Query: 187 --GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVA------AAAVGWKLDTTIIFP 238
             G  Y    +  D     L K K+VV +GGG  G   A         V      TII  
Sbjct: 139 GKGTSY---CSTCDG---YLFKGKRVVTIGGGNSGAIAAISMSEYVKNV------TII-- 184

Query: 239 ENHLLQRLFTPSLAQRYEQLYQQ----NGVKFVKGASIKNLEAGSDGRVAAVKLEDGST- 293
               + +          E  Y Q      + ++  A +  +  G   +V  VK +D +T 
Sbjct: 185 --EYMPKY-------MCENAYVQEIKKRNIPYIMNAQVTEIV-GDGKKVTGVKYKDRTTG 234

Query: 294 ----IDADTIVIGIGAKPTVSPFERVGLNSSVGG-IQVDGQFRTRMPGIFAIGDVAAFPL 348
               I+ D + I +G  P  S  +  G+     G I VD + RT +PG++A GDV +   
Sbjct: 235 EEKLIETDGVFIYVGLIPQTSFLKDSGVKLDERGYIVVDSRQRTSVPGVYAAGDVTSGNF 294

Query: 349 K 349
            
Sbjct: 295 A 295

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 Length = 310

 Score = 72.5 bits (179), Expect = 3e-14
 Identities = 58/237 (24%), Positives = 93/237 (39%), Gaps = 43/237 (18%)

Query: 134 GIEMIYQDP---VTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP-- 186
            +++I       +    +E     + T SG +LK  S+IVATG         +   +P  
Sbjct: 70  DVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAK----WRNMN--VPGE 123

Query: 187 ------GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240
                 GV Y       D     L K K+V V+GGG  G+E A       +D   I    
Sbjct: 124 DQYRTKGVTY---CPHCDG---PLFKGKRVAVIGGGNSGVEAA-------IDLAGIVEHV 170

Query: 241 HLLQRLFTPSL-AQRY--EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST---- 293
            LL+    P + A +   ++L     V  +  A    ++ G   +V  ++  D  +    
Sbjct: 171 TLLEFA--PEMKADQVLQDKLRSLKNVDIILNAQTTEVK-GDGSKVVGLEYRDRVSGDIH 227

Query: 294 -IDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 349
            I+   I + IG  P  +  E     + +G I +D +  T + G+FA GD    P K
Sbjct: 228 NIELAGIFVQIGLLPNTNWLEGAVERNRMGEIIIDAKCETNVKGVFAAGDCTTVPYK 284

>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit); electron transport(flavocytochrome); HET: FAD HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 401

 Score = 71.7 bits (176), Expect = 1e-13
 Identities = 61/323 (18%), Positives = 100/323 (30%), Gaps = 65/323 (20%)

Query: 55  VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGF 114
           V+VGGG     AA+           + ++                              +
Sbjct: 6   VVVGGGTGGATAAKYIKLAD-PSIEVTLIEPNTD-------------------------Y 39

Query: 115 HTCVGS----GGERQTPEWYKE------KGIEMIYQDPVTSIDIEKQTLITNSGKLLKYG 164
           +TC  S    GG+R+              GI+++  D  T ID +K+ + T  G    Y 
Sbjct: 40  YTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVV-HDSATGIDPDKKLVKTAGGAEFGYD 98

Query: 165 SLIVATGCTASRFPEKIGGYLP-----GVHYIRDVADADAL---ISSLEKAKKVVVV--- 213
             +VA G       +KI GY         H  +       L   +  +     VV+    
Sbjct: 99  RCVVAPGIELI--YDKIEGYSEEAAAKLPHAWKAGEQTAILRKQLEDMADGGTVVIAPPA 156

Query: 214 ------GGGYIGMEVAAAAV---GWKLDTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNG 263
                  G Y      A  +          I+        Q  F+    + Y    +   
Sbjct: 157 APFRCPPGPYERASQVAYYLKAHKPMSKVIILDSSQTFSKQSQFSKGWERLYGFGTENAM 216

Query: 264 VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGG 323
           +++  G     ++   DG    V+   G    AD I + I  +      +  GL +  G 
Sbjct: 217 IEWHPGPDSAVVKV--DGGEMMVETAFGDEFKADVINL-IPPQRAGKIAQIAGLTNDAGW 273

Query: 324 IQVDGQ-FR-TRMPGIFAIGDVA 344
             VD + F  +   GI  IGD +
Sbjct: 274 CPVDIKTFESSIHKGIHVIGDAS 296

>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit); electron transport(flavocytochrome); HET: FAD HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 401

 Score = 40.5 bits (95), Expect = 9e-04
 Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 16/112 (14%)

Query: 207 AKKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFP-ENHLLQ--------RLFTPSLAQRY 255
            +KVVVVGGG  G   A         ++ T+I P  ++                   +  
Sbjct: 2   GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHG 61

Query: 256 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 307
               + +G++ V   S   ++   D ++  VK   G+    D  V+  G + 
Sbjct: 62  YDGLRAHGIQVVH-DSATGIDP--DKKL--VKTAGGAEFGYDRCVVAPGIEL 108

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Length = 1025

 Score = 70.6 bits (173), Expect = 5e-13
 Identities = 57/323 (17%), Positives = 112/323 (34%), Gaps = 60/323 (18%)

Query: 128 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRF------PEKI 181
           E  K+ G+++I    ++  +I   TL         Y +  +  G    +         + 
Sbjct: 246 ELMKDLGVKIICGKSLSENEITLNTLKEEG-----YKAAFIGIGLPEPKTDDIFQGLTQD 300

Query: 182 GGYLPGVHYIRDVADADALISSLEKA------KKVVVVGGGYIGMEVAAAAV--GWKLDT 233
            G+     ++  VA +         +        V+V+G G    + A +A+  G +   
Sbjct: 301 QGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCATSALRCGAR-RV 359

Query: 234 TIIFPENHLLQRLFTPSLAQRYE-QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--- 289
            ++F      ++ F    A   E +L ++   +F+   S + +     GR+ AV+     
Sbjct: 360 FLVF------RKGFVNIRAVPEEVELAKEEKCEFLPFLSPRKVI-VKGGRIVAVQFVRTE 412

Query: 290 ----------DGS--TIDADTIVIGIGAKPTVSP--FERVGLN-SSVGGIQVDGQ-FRTR 333
                     +     + AD ++   G+             +  +     +VD +  +T 
Sbjct: 413 QDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTS 472

Query: 334 MPGIFAIGDVAAFPLKMYDRTAR--VEHVDHARQSAQ--HC-IKALLSAQTHTYDYLPYF 388
            P +FA GD+           A   VE V+  +Q++   H  I+A   A       LP F
Sbjct: 473 EPWVFAGGDIV--------GMANTTVESVNDGKQASWYIHKYIQAQYGASVSAKPELPLF 524

Query: 389 YSRVFEYEGSPRKVWWQFFGDNV 411
           Y+ V   + S      +F     
Sbjct: 525 YTPVDLVDISVEMAGLKFINPFG 547

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* Length = 323

 Score = 64.5 bits (158), Expect = 1e-11
 Identities = 53/233 (22%), Positives = 90/233 (38%), Gaps = 51/233 (21%)

Query: 134 GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR--FP--EKIGGYLPG 187
            + ++  D V  I+       + T      K  S+I+  G    +   P  ++  G   G
Sbjct: 84  EVPVLL-DIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKRRKLGVPGEQEFAGR--G 140

Query: 188 VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVA------AAAVGWKLDTTIIFPENH 241
           + Y    + ADA    L K + V V+GGG   +E A      +  V       +I   + 
Sbjct: 141 ISY---CSVADA---PLFKNRVVAVIGGGDSALEGAEILSSYSTKV------YLIHRRDT 188

Query: 242 LLQRLFTPSLAQRYEQLYQQ-----NGVKFVKGASIKNLEAGSDGRVAAVKLED-----G 291
                       + + +Y +       V+FV  + +K  E   D  V  V +E+      
Sbjct: 189 F-----------KAQPIYVETVKKKPNVEFVLNSVVK--EIKGDKVVKQVVVENLKTGEI 235

Query: 292 STIDADTIVIGIGAKPTVSPFERVGLNSSVGG-IQVDGQFRTRMPGIFAIGDV 343
             ++ + + I IG  P     +  G+ +   G I+VD   RT +PG+FA GD 
Sbjct: 236 KELNVNGVFIEIGFDPPTDFAKSNGIETDTNGYIKVDEWMRTSVPGVFAAGDC 288

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Length = 690

 Score = 64.6 bits (158), Expect = 4e-11
 Identities = 43/233 (18%), Positives = 73/233 (31%), Gaps = 34/233 (14%)

Query: 124 RQTPEWY-----KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCT--ASR 176
            +  E+      +   +E+  + P+T  DI +            +  +I ATG T     
Sbjct: 443 GRVKEYREAVLAELPNVEIYRESPMTGDDIVE----------FGFEHVITATGATWRTDG 492

Query: 177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGG--YIGMEVAAAAVGWKLDTT 234
                   LP    ++ +   D     L   KKVVV      Y+G  VA        + +
Sbjct: 493 VARFHTTALPIAEGMQVLGPDDLFAGRLPDGKKVVVYDDDHYYLGGVVAELLAQKGYEVS 552

Query: 235 IIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--S 292
           I+ P   +           R ++   +NGV  V   +   + A   G V           
Sbjct: 553 IVTPGAQVSSWTNNTFEVNRIQRRLIENGVARVTDHA---VVAVGAGGVTVRDTYASIER 609

Query: 293 TIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 345
            ++ D +V+     P    +  +      G I            +  IGD  A
Sbjct: 610 ELECDAVVMVTARLPREELYLDLVARRDAGEI----------ASVRGIGDAWA 652

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* Length = 311

 Score = 61.4 bits (150), Expect = 1e-10
 Identities = 41/252 (16%), Positives = 82/252 (32%), Gaps = 82/252 (32%)

Query: 134 GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR--FP--EKIGGYLPG 187
           G++      V  +  +     ++   GK  +  S+I+ATG +  R       +  G   G
Sbjct: 73  GLKHEM-TAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPKRTGIKGESEYWGK--G 129

Query: 188 VHY--------IRDVADADALISSLEKAKKVVVVGGGYIGMEVA------AAAVGWKLDT 233
           V           ++              K+V V+GGG   +E A         V      
Sbjct: 130 VSTCATCDGFFYKN--------------KEVAVLGGGDTAVEEAIYLANICKKV------ 169

Query: 234 TIIFPENH----------LLQRLFTPSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGR 282
            +I    H           L+                 N  ++F+    ++ ++ G    
Sbjct: 170 YLI----HRRDGFRCAPITLEHAK-------------NNDKIEFLTPYVVEEIK-GDASG 211

Query: 283 VAAVKLED-----GSTIDADTIVIGIGAKPTVSPFERVGLNSSV-----GGIQVDGQFRT 332
           V+++ +++        +      I +G     +  ++   +        G I VD   +T
Sbjct: 212 VSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLCKCDEYGSIVVDFSMKT 271

Query: 333 RMPGIFAIGDVA 344
            + G+FA GD+ 
Sbjct: 272 NVQGLFAAGDIR 283

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357

 Score = 59.3 bits (144), Expect = 9e-10
 Identities = 38/228 (16%), Positives = 77/228 (33%), Gaps = 34/228 (14%)

Query: 143 VTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS-RFPEKIGGYLPGVHYI--RDVADA 197
           V  +    +   ++   G+     ++I ATG       PE  G        +     +  
Sbjct: 99  VQRVSHFGERLRVVARDGRQWLARAVISATGTWGEAYTPEYQGLESFAGIQLHSAHYSTP 158

Query: 198 DALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIF-PENHLLQRLFTPSLAQRYE 256
                      +V ++GGG  G ++ A        T I       L   +    L +R  
Sbjct: 159 APF-----AGMRVAIIGGGNSGAQILAEVSTVAETTWITQHEPAFLADDVDGRVLFERAT 213

Query: 257 QLYQQN--------GVKFVKGASIKN--LEAGSDGRVAA-----------VKLEDGSTID 295
           + ++                   +    L+A + G +AA           ++  DG+   
Sbjct: 214 ERWKAQQEGREPDLPPGGFGDIVMVPPVLDARARGVLAAVPPPARFSPTGMQWADGTERA 273

Query: 296 ADTIVIGIGAKPTVSPFERVGLNSSVGGIQVD--GQFRTRMPGIFAIG 341
            D ++   G +P +S  + + L +  G ++VD  G     +P ++ +G
Sbjct: 274 FDAVIWCTGFRPALSHLKGLDLVTPQGQVEVDGSGLRALAVPSVWLLG 321

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.9 bits (139), Expect = 4e-09
 Identities = 64/393 (16%), Positives = 111/393 (28%), Gaps = 113/393 (28%)

Query: 91  YERPALTKG----------------YLF-PLDKKPARLPGFHTCVGSGGERQTPEWYKEK 133
             +  L+K                  LF  L  K          V     R   ++    
Sbjct: 41  MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE--MVQKFVE-EVLRINYKFLMSP 97

Query: 134 GIEMIYQDP--VTSIDIEKQTLITNSGKLL-KYGSLIVATGCTASRFPEKIGGYLPGVHY 190
            I+   + P  +T + IE++  + N  ++  KY           SR  +           
Sbjct: 98  -IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY---------NVSR-LQP-------YLK 139

Query: 191 IRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTI-------IF------ 237
           +R      AL   L  AK V++ G    G    A  V   L   +       IF      
Sbjct: 140 LRQ-----AL-LELRPAKNVLIDGVLGSGKTWVALDV--CLSYKVQCKMDFKIFWLNLKN 191

Query: 238 ---PENHL--LQRL---FTPSLAQRYEQL----YQQNGVK-----FVKGASIKN----LE 276
              PE  L  LQ+L     P+   R +       + + ++      +K    +N    L 
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251

Query: 277 AGSDGRVA-AVKLE--------DGSTIDA-----DTIVIGIGAKPTVSPFERVGLNSSVG 322
              + +   A  L              D       T +       T++P E   L     
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311

Query: 323 GIQVDG---QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT 379
             +      +  T  P    +  +A             +HV+  + +    I++ L+   
Sbjct: 312 DCRPQDLPREVLTTNP--RRLSIIAESIRDGLATWDNWKHVNCDKLT--TIIESSLNVLE 367

Query: 380 HTYDYLPYFYS-RVFEYEGS--PRKV----WWQ 405
              +Y   F    VF    +  P  +    W+ 
Sbjct: 368 -PAEYRKMFDRLSVFP-PSAHIPTILLSLIWFD 398

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} Length = 315

 Score = 55.6 bits (135), Expect = 1e-08
 Identities = 46/252 (18%), Positives = 85/252 (33%), Gaps = 82/252 (32%)

Query: 134 GIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCTASR--FP--EKIGGYLP 186
           G++      V  I        T+    GK     ++IV TG    +  F   ++  G   
Sbjct: 76  GLKHEM-VGVEQILKNSDGSFTIKLEGGKTELAKAVIVCTGSAPKKAGFKGEDEFFGK-- 132

Query: 187 GVHY--------IRDVADADALISSLEKAKKVVVVGGGYIGMEVA------AAAVGWKLD 232
           GV           ++              K+V V+GGG   +E A       + +     
Sbjct: 133 GVSTCATCDGFFYKN--------------KEVAVLGGGDTALEEALYLANICSKI----- 173

Query: 233 TTIIFPENH----------LLQRLFTPSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDG 281
             +I    H           ++++              +N  ++ +  AS+  +  G   
Sbjct: 174 -YLI----HRRDEFRAAPSTVEKVK-------------KNEKIELITSASVDEVY-GDKM 214

Query: 282 RVAAVKL--EDGST--IDADTIVIGIGAKPTVSPFERVGLNSSV-----GGIQVDGQFRT 332
            VA VK+  +DGS   ++   I   +G        ++            G + VD + +T
Sbjct: 215 GVAGVKVKLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDLKMQT 274

Query: 333 RMPGIFAIGDVA 344
            + G+FA GD+ 
Sbjct: 275 SVAGLFAAGDLR 286

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} Length = 325

 Score = 53.7 bits (130), Expect = 4e-08
 Identities = 52/251 (20%), Positives = 85/251 (33%), Gaps = 83/251 (33%)

Query: 134 GIEMIYQDPVTSIDIEKQ------TLITNSGKLLKYGSLIVATGCTASR--FP--EKIGG 183
           G ++   D V  +  +        T+   +G+  +  ++I+ATG    +   P  +   G
Sbjct: 79  GAKVEM-DEVQGVQHDATSHPYPFTVRGYNGEY-RAKAVILATGADPRKLGIPGEDNFWG 136

Query: 184 YLPGVHY--------IRDVADADALISSLEKAKKVVVVGGGYIGMEVA------AAAVGW 229
              GV           +               KKVVV+GGG   +E        A  V  
Sbjct: 137 K--GVSTCATCDGFFYKG--------------KKVVVIGGGDAAVEEGMFLTKFADEV-- 178

Query: 230 KLDTTIIFPENH----------LLQRLFTPSLAQRYEQLYQQNG-VKFVKGASIKNLEAG 278
               T+I    H             R F              N  +KF+   +++  E  
Sbjct: 179 ----TVI----HRRDTLRANKVAQARAF-------------ANPKMKFIWDTAVE--EIQ 215

Query: 279 SDGRVAAVKLED-----GSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTR 333
               V+ VKL +      S +  D + I IG  P  +  +        G + V  +  T 
Sbjct: 216 GADSVSGVKLRNLKTGEVSELATDGVFIFIGHVPNTAFVKDTVSLRDDGYVDVRDEIYTN 275

Query: 334 MPGIFAIGDVA 344
           +P +FA GDV+
Sbjct: 276 IPMLFAAGDVS 286

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671

 Score = 51.6 bits (124), Expect = 4e-07
 Identities = 48/307 (15%), Positives = 93/307 (30%), Gaps = 95/307 (30%)

Query: 48  ANENREFVIVGGGNAAGYAARTFVEHGM------ADGRLCIVSKEAYAPYERPALTKGYL 101
           A + +   +VG G A    A      G       A   +                  G  
Sbjct: 370 AVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEI------------------GGQ 411

Query: 102 FPLDKKPARLPGFHTCVGSGGERQTPEWY----KEKGIEMIYQDPVTSIDIEKQTLITNS 157
           F + K+      F+         +T  +Y    +  G+ +     VT+  ++        
Sbjct: 412 FNIAKQIPGKEEFY---------ETLRYYRRMIEVTGVTLKLNHTVTADQLQA------- 455

Query: 158 GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGY 217
                +   I+A+G      P      + G+ + + ++  D L        KV ++G G 
Sbjct: 456 -----FDETILASGIVPRTPP------IDGIDHPKVLSYLDVLRDKAPVGNKVAIIGCGG 504

Query: 218 IGMEVA---------------AAAVGWKLDTTIIFP---------------ENHLLQRLF 247
           IG + A                    W +D+++                  +  +LQR  
Sbjct: 505 IGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKA 564

Query: 248 T-------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV 300
           +        +    +       GVK + G S + ++   D  +  V   +   +  D +V
Sbjct: 565 SKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKID---DDGLHVVINGETQVLAVDNVV 621

Query: 301 IGIGAKP 307
           I  G +P
Sbjct: 622 ICAGQEP 628

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} Length = 456

 Score = 49.8 bits (120), Expect = 1e-06
 Identities = 48/213 (22%), Positives = 79/213 (37%), Gaps = 32/213 (15%)

Query: 162 KYGSLIVATGCTASRFPEKIGGYLPGVHY--------IRDVADADALISSLE----KAKK 209
           K+ +++VATG   +R  +  G  L  +           +                   K 
Sbjct: 207 KHVAVLVATGVYKARDIKAPGSGLGNIVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKH 266

Query: 210 VVVVGGGYIGMEVAAAAV--GWKLDTTI-IFPENHLLQRLFTPSLAQR--YEQLYQQNGV 264
           VVV+GGG   M+    A+  G      +      ++       + A+    E ++Q    
Sbjct: 267 VVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRKNMPGSQREVAHAEEEGVEFIWQAAPE 326

Query: 265 KF--------VKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVSP--F 312
            F        V+   I    A + GR     +E GS  T+ AD ++  +G +P   P  F
Sbjct: 327 GFTGDTVVTGVRAVRIHLGVADATGRQTPQVIE-GSEFTVQADLVIKALGFEPEDLPNAF 385

Query: 313 ERVGLNSSV-GGIQVD-GQFRTRMPGIFAIGDV 343
           +   L  +  G + VD     T M G+FA GD+
Sbjct: 386 DEPELKVTRWGTLLVDHRTKMTNMDGVFAAGDI 418

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* Length = 729

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 24/164 (14%), Positives = 50/164 (30%), Gaps = 24/164 (14%)

Query: 167 IVATGCTASRFPEKIGGY--LPGV-HYIRDVADA-DALISSLEKAKKVVVVGGG--YIGM 220
           I+ATG   +        +  +PG    + D       +    +  K+VV++     ++  
Sbjct: 484 IIATGARWNTDGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAP 543

Query: 221 EVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS- 279
            +A        + TI+   +      FT        +L+ +  V+ +       +E G  
Sbjct: 544 SLAEKLATAGHEVTIVSGVHLANYMHFTLEYPNMMRRLH-ELHVEELGDHFCSRIEPGRM 602

Query: 280 ----------------DGRVAAVKLEDGSTIDADTIVIGIGAKP 307
                            G            I+ D++V+  G   
Sbjct: 603 EIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHS 646

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} Length = 335

 Score = 47.5 bits (114), Expect = 5e-06
 Identities = 47/237 (19%), Positives = 92/237 (38%), Gaps = 57/237 (24%)

Query: 134 GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR--FP--EKIGGYLPG 187
           G ++  +D V S+ +     +++T  G+  +  ++I+A G  A     P  +++ G   G
Sbjct: 85  GADLRMED-VESVSLHGPLKSVVTADGQTHRARAVILAMGAAARYLQVPGEQELLGR--G 141

Query: 188 VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVA------AAAVGWKLDTTIIFPENH 241
           V      A  D       + + + V+GGG   ME A      A +V      T++    H
Sbjct: 142 VSS---CATCDGFFF---RDQDIAVIGGGDSAMEEATFLTRFARSV------TLV----H 185

Query: 242 ----------LLQRLF-TPSLAQRYE-QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE 289
                     +L R      +       +   +G   V G  +++   G++         
Sbjct: 186 RRDEFRASKIMLDRARNNDKIRFLTNHTVVAVDGDTTVTGLRVRDTNTGAE--------- 236

Query: 290 DGSTIDADTIVIGIGAKPTVSPFE-RVGLNSSVGGIQVDGQF-RTRMPGIFAIGDVA 344
             +T+    + + IG +P        + ++   G + V G+   T +PG+FA GD+ 
Sbjct: 237 --TTLPVTGVFVAIGHEPRSGLVREAIDVDPD-GYVLVQGRTTSTSLPGVFAAGDLV 290

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Length = 369

 Score = 47.5 bits (113), Expect = 5e-06
 Identities = 38/213 (17%), Positives = 71/213 (33%), Gaps = 22/213 (10%)

Query: 143 VTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADAL 200
           VT+I  +    T+ T +        + VATG               G+HY  ++ D D  
Sbjct: 111 VTNISADDAYYTIATTTETY-HADYIFVATGDYNFPKKPFK----YGIHY-SEIEDFDNF 164

Query: 201 ISSLEKAKKVVVVGGGYIGMEVA------AAAVGWKLDTTIIFPENHLLQRLFTPSLAQR 254
                   + VV+GG   G + A       + +     TT +   +       +P   QR
Sbjct: 165 -----NKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQR 219

Query: 255 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTID-ADTIVIGIGAKPTVSPFE 313
              +  + G +          +   +     +  + G ++      ++  G   T +P  
Sbjct: 220 LGNVI-KQGARIEMNVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPILATGFDATKNPIV 278

Query: 314 RVGLNSSVGGIQVDGQFR-TRMPGIFAIGDVAA 345
           +    ++   I++      TR P IF IG    
Sbjct: 279 QQLFVTTNQDIKLTTHDESTRYPNIFMIGATVE 311

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* Length = 456

 Score = 42.5 bits (100), Expect = 3e-04
 Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 2/70 (2%)

Query: 275 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRM 334
           L +   GRVAA    +   + A  +V  +G +    P   +  +   G I   G      
Sbjct: 294 LVSDGSGRVAAKDTGEREELPAQLVVRSVGYRG--VPTPGLPFDDQSGTIPNVGGRINGS 351

Query: 335 PGIFAIGDVA 344
           P  + +G + 
Sbjct: 352 PNEYVVGWIK 361

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* Length = 333

 Score = 42.2 bits (100), Expect = 3e-04
 Identities = 54/242 (22%), Positives = 86/242 (35%), Gaps = 59/242 (24%)

Query: 134 GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR--FP-EKIGGYLPGV 188
           G  +  +  VT +D   +   L T+S  +L   ++I+A G  A R  F        + G 
Sbjct: 84  GTTIFTET-VTKVDFSSKPFKLFTDSKAILAD-AVILAIGAVAKRLSFVGSG---EVLGG 138

Query: 189 HYIRDV---ADADALISSLEKAKKVVVVGGGYIGMEVA------AAAVGWKLDTTIIFPE 239
            + R +   A  D   + + + K + V+GGG   ME A       + V       II   
Sbjct: 139 FWNRGISACAVCDGA-APIFRNKPLAVIGGGDSAMEEANFLTKYGSKV------YII--- 188

Query: 240 NH----------LLQRLF-----TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA 284
            H          + QR                + Y       + G  +KN+  G      
Sbjct: 189 -HRRDAFRASKIMQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDV---- 243

Query: 285 AVKLEDGSTIDADTIVIGIGAKPTVSPFE-RVGLNSSVGGIQVD-GQFRTRMPGIFAIGD 342
                  S +    +   IG +P     +  V L+S  G +    G  +T +PG+FA GD
Sbjct: 244 -------SDLKVSGLFFAIGHEPATKFLDGGVELDSD-GYVVTKPGTTQTSVPGVFAAGD 295

Query: 343 VA 344
           V 
Sbjct: 296 VQ 297

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* Length = 320

 Score = 41.3 bits (98), Expect = 4e-04
 Identities = 53/251 (21%), Positives = 91/251 (36%), Gaps = 78/251 (31%)

Query: 134 GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR--FP--EKIGGYLPG 187
             E+I+ D +  +D++ +   L  ++G+     +LI+ATG +A     P  E   G   G
Sbjct: 76  ETEIIF-DHINKVDLQNRPFRLNGDNGEYTC-DALIIATGASARYLGLPSEEAFKGR--G 131

Query: 188 VHYIRDVADADALISS-------LEKAKKVVVVGGGYIGMEVA------AAAVGWKLDTT 234
           V             S+         + +KV V+GGG   +E A      A+ V       
Sbjct: 132 V-------------SACATSDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEV------H 172

Query: 235 IIFPENH----------LLQRLFTPSLAQRYEQLYQQNGV------KFVKGASIKNLEAG 278
           +I    H          L++RL              +           V G  +++ +  
Sbjct: 173 LI----HRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNS 228

Query: 279 SDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQF-----RTR 333
                     ++  ++D   + + IG  P  + FE   L    G I+V         +T 
Sbjct: 229 ----------DNIESLDVAGLFVAIGHSPNTAIFEGQ-LELENGYIKVQSGIHGNATQTS 277

Query: 334 MPGIFAIGDVA 344
           +PG+FA GDV 
Sbjct: 278 IPGVFAAGDVM 288

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	488
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	100.0
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	100.0
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	100.0
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	100.0
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	100.0
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	100.0
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	100.0
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	100.0
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	100.0
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	100.0
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	100.0
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	100.0
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	100.0
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	100.0
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	100.0
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	100.0
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	100.0
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	100.0
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	100.0
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	100.0
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	100.0
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	100.0
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	100.0
1ojt_A	482	Surface protein; redox-active center, glycolysis,	100.0
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	100.0
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	100.0
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	100.0
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	100.0
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	100.0
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	100.0
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	100.0
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	100.0
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	100.0
1fec_A	490	Trypanothione reductase; redox-active center, oxid	100.0
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	100.0
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	100.0
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	100.0
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	100.0
4dna_A	463	Probable glutathione reductase; structural genomic	100.0
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	100.0
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	100.0
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	100.0
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	100.0
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	100.0
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	100.0
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	100.0
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	100.0
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	100.0
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	100.0
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	100.0
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	100.0
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	100.0
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	100.0
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	100.0
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	100.0
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	100.0
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	100.0
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	100.0
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	100.0
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	100.0
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	100.0
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	100.0
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	100.0
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	100.0
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	100.0
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	100.0
3r9u_A	315	Thioredoxin reductase; structural genomics, center	100.0
4fk1_A	304	Putative thioredoxin reductase; structural genomic	100.0
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	100.0
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	100.0
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	100.0
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	100.0
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	100.0
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	100.0
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	100.0
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	99.97
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	99.97
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	99.97
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	99.97
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	99.97
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	99.97
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	99.97
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	99.97
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	99.96
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	99.96
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.95
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	99.93
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	99.93
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	99.92
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.88
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	99.81
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	99.71
2cul_A	232	Glucose-inhibited division protein A-related PROT	99.61
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	99.55
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.48
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.23
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.18
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	99.12
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.12
2bry_A	497	NEDD9 interacting protein with calponin homology a	99.07
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	99.04
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	98.98
3dme_A	369	Conserved exported protein; structural genomics, P	98.98
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	98.96
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	98.92
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.91
2bry_A	497	NEDD9 interacting protein with calponin homology a	98.9
2cul_A	232	Glucose-inhibited division protein A-related PROT	98.89
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	98.88
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.84
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	98.83
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	98.81
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.8
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	98.79
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	98.77
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	98.77
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	98.77
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	98.77
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.75
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.74
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	98.74
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	98.72
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	98.71
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.7
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	98.7
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	98.7
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	98.68
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	98.67
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	98.66
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	98.62
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	98.62
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	98.62
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	98.62
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	98.59
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	98.58
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	98.58
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	98.57
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	98.56
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.55
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	98.54
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	98.54
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	98.54
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	98.53
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	98.53
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	98.5
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	98.5
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	98.5
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.49
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.49
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	98.49
3atr_A	453	Conserved archaeal protein; saturating double bond	98.49
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.49
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.48
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	98.48
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.47
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.46
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	98.45
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.45
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	98.44
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.44
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	98.43
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	98.43
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.42
4hb9_A	412	Similarities with probable monooxygenase; flavin,	98.39
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.39
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.39
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	98.38
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.38
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.37
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.36
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.35
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.35
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.34
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.34
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	98.34
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.33
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	98.33
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.33
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	98.33
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	98.32
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.32
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	98.32
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.31
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.31
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	98.31
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.31
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.3
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.3
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.3
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.3
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.3
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.29
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.29
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	98.29
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	98.28
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.28
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.28
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.27
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.26
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.26
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.24
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	98.24
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.24
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.24
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.23
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.23
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	98.22
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.22
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.21
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.21
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.2
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	98.2
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	98.19
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.18
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.18
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.18
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	98.18
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	98.17
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.16
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.16
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.16
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.15
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.15
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.15
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	98.15
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.15
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	98.14
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.14
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	98.14
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.13
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.12
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	98.12
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.11
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	98.1
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	98.1
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	98.1
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.1
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.1
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	98.1
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	98.09
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	98.09
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.09
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	98.08
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.08
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.08
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.07
4hb9_A	412	Similarities with probable monooxygenase; flavin,	98.07
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	98.06
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.06
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.05
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.05
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.05
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	98.05
3atr_A	453	Conserved archaeal protein; saturating double bond	98.05
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	98.04
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.02
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.01
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.01
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.0
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	97.99
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	97.99
4dna_A	463	Probable glutathione reductase; structural genomic	97.98
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	97.98
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.98
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	97.97
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	97.97
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	97.95
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.94
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	97.93
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	97.93
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	97.92
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	97.91
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	97.9
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	97.9
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	97.88
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	97.88
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	97.86
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	97.86
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	97.86
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	97.85
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	97.82
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	97.81
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	97.81
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	97.79
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	97.78
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	97.76
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	97.76
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	97.75
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	97.75
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	97.7
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	97.7
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	97.7
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	97.68
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	97.68
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	97.68
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	97.65
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	97.64
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	97.63
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	97.63
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	97.63
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	97.62
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	97.61
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	97.61
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	97.6
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	97.6
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	97.6
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.59
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.59
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	97.59
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	97.58
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.58
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.58
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	97.54
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	97.52
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.52
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	97.49
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	97.48
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.46
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	97.45
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	97.45
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	97.43
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	97.42
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	97.41
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	97.39
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	97.39
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	97.38
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	97.37
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	97.34
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	97.33
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	97.33
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	97.3
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	97.26
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.24
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	97.23
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	97.21
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	97.13
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	97.13
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	97.1
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	97.07
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	97.03
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	97.03
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	96.97
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	96.97
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	96.96
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	96.95
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	96.92
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	96.87
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	96.8
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	96.76
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	96.66
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	96.59
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	96.56
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	96.55
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	96.5
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	96.46
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	96.4
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	96.25
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	96.23
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	96.1
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	95.98
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	95.96
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	95.95
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	95.84
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	95.8
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	95.78
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	95.75
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	95.68
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	95.67
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	95.64
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	95.5
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	95.42
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	95.21
1id1_A	153	Putative potassium channel protein; RCK domain, E.	95.12
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	95.1
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	95.03
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	94.98
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	94.44
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	94.26
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	93.9
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	93.88
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	93.62
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	93.54
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	93.38
3c85_A	183	Putative glutathione-regulated potassium-efflux S	93.27
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	93.19
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	92.89
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	92.89
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	92.75
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	92.71
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	92.68
3dme_A	369	Conserved exported protein; structural genomics, P	92.64
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	92.6
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	92.57
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	92.56
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	92.54
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	92.5
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	92.48
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	92.39
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	92.33
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	92.29
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	92.25
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	92.23
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	92.07
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	92.02
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	91.99
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	91.96
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	91.91
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	91.78
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	91.71
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	91.67
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	91.63
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	91.56
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	91.47
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	91.45
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	91.45
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	91.39
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	91.38
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	91.36
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	91.29
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	91.28
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	91.24
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	91.18
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	91.09
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	91.07
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	91.07
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	90.88
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	90.74
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	90.73
3tl2_A	315	Malate dehydrogenase; center for structural genomi	90.72
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	90.67
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	90.63
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	90.63
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	90.52
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	90.42
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	90.28
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	90.26
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	90.26
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	90.25
1id1_A	153	Putative potassium channel protein; RCK domain, E.	90.16
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	90.12
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	90.05
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	90.04
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	89.88
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	89.82
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	89.81
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	89.78
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	89.59
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	89.55
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	89.54
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	89.43
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	89.43
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	89.39
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	89.27
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	89.23
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	89.17
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	89.16
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	89.07
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	89.04
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	88.94
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	88.89
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	88.83
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	88.73
4g65_A	461	TRK system potassium uptake protein TRKA; structur	88.66
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	88.65
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	88.62
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	88.55
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	88.49
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	88.42
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	88.41
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	88.38
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	88.2
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	88.15
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	87.9
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	87.88
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	87.84
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	87.81
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	87.81
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	87.69
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	87.68
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	87.53
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	87.48
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	87.39
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	87.35
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	87.33
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	87.33
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	87.3
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	87.26
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	87.25
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	87.23
1kjq_A	391	GART 2, phosphoribosylglycinamide formyltransferas	87.23
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	87.22
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	87.07
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	87.07
3qha_A	296	Putative oxidoreductase; seattle structural genomi	87.06
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	86.87
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	86.85
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	86.8

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=100.00  E-value=2.8e-58  Score=463.98  Aligned_cols=396  Identities=29%  Similarity=0.506  Sum_probs=349.3

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHh
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (488)
                      +++++|||||||+||++||.+|++.|+ +.+|+|||++++.+|.+|++++.++.... ....+           .....+
T Consensus         7 ~~~~~vvIIGaG~aGl~aA~~L~~~g~-~~~V~lie~~~~~~y~~~~l~~~~~~~~~-~~~~~-----------~~~~~~   73 (415)
T 3lxd_A            7 AERADVVIVGAGHGGAQAAIALRQNGF-EGRVLVIGREPEIPYERPPLSKEYLAREK-TFERI-----------CIRPAQ   73 (415)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTC-CSCEEEEESSSSCCBCSGGGGTTTTTTSS-CSGGG-----------BSSCHH
T ss_pred             CCCCcEEEECChHHHHHHHHHHHccCc-CCCEEEEecCCCCCcCcccCCHHHHcCCC-CHHHh-----------ccCCHH
Confidence            346899999999999999999999997 56799999999999999988875554321 11111           245678


Q ss_pred             HHHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhc-C
Q 011351          129 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK-A  207 (488)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~-~  207 (488)
                      ++.+.+++++.+++|+.++++.+.+.+.+++.+.||+||+|||+.+. .++++|.+.++++++++..++..+...+.. +
T Consensus        74 ~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~~~-~~~i~g~~~~~v~~~~~~~d~~~l~~~~~~~~  152 (415)
T 3lxd_A           74 FWEDKAVEMKLGAEVVSLDPAAHTVKLGDGSAIEYGKLIWATGGDPR-RLSCVGADLAGVHAVRTKEDADRLMAELDAGA  152 (415)
T ss_dssp             HHHHTTEEEEETCCEEEEETTTTEEEETTSCEEEEEEEEECCCEECC-CCBTTSSCCBTEECCCSHHHHHHHHHHHHTTC
T ss_pred             HHHHCCcEEEeCCEEEEEECCCCEEEECCCCEEEeeEEEEccCCccC-CCCCCCccccCEEEEcCHHHHHHHHHHhhhcC
Confidence            89999999999989999999999999999999999999999999886 456677777889999999999888887777 9


Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEE
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK  287 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~  287 (488)
                      ++++|||+|.+|+|+|..+.+.|.+|+++++.++++++.+++.+.+.+.+.+++.||++++++.|++++.+ ++++..|.
T Consensus       153 ~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~v~~v~  231 (415)
T 3lxd_A          153 KNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEGD-GTKVTGVR  231 (415)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEES-SSBEEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhhhhcCHHHHHHHHHHHHhCCCEEEECCEEEEEEec-CCcEEEEE
Confidence            99999999999999999999999999999999999998889999999999999999999999999999864 56777899


Q ss_pred             eCCCcEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeCCCCCCCCCCEEEEceecccCCccC-CcccccccHHHHHHH
Q 011351          288 LEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMY-DRTARVEHVDHARQS  366 (488)
Q Consensus       288 l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~-~~~~~~~~~~~A~~~  366 (488)
                      +++|++++||.||+|+|.+|++++++.+|+..+ ++|.||++++|+.|+|||+|||+..+.... |...+.++|..|..|
T Consensus       232 l~dG~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~-~gi~vd~~~~t~~~~iyA~GD~a~~~~~~~~g~~~~~~~~~~A~~q  310 (415)
T 3lxd_A          232 MQDGSVIPADIVIVGIGIVPCVGALISAGASGG-NGVDVDEFCRTSLTDVYAIGDCAAHANDFADGAVIRLESVQNANDM  310 (415)
T ss_dssp             ESSSCEEECSEEEECSCCEESCHHHHHTTCCCS-SSEECCTTCBCSSTTEEECGGGEEEECGGGTTCEECCCSHHHHHHH
T ss_pred             eCCCCEEEcCEEEECCCCccChHHHHhCCCCcC-CCEEECCCCCcCCCCEEEEEeeeeecCcccCCcceeechHHHHHHH
Confidence            999999999999999999999999999999887 469999999999999999999999887666 777778899999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCceeEeccccCCCCcceeeEEeeCCCC--cEEEEccCC-CcEEEEEEECCEEEEEEeecCC
Q 011351          367 AQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--ETIEIGNFD-PKIATFWIDSGKLKGVLVESGS  443 (488)
Q Consensus       367 g~~~a~~i~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~--~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~  443 (488)
                      |+.+|+||++. ..+|..+||||+++|+..       ++++|...+  +++..++.+ .+|.++|+++|+|+|+++ .|+
T Consensus       311 g~~aa~~i~g~-~~~~~~~p~~~~~~~~~~-------~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~  381 (415)
T 3lxd_A          311 ATAAAKDICGA-PVPYKATPWFWSNQYDLK-------LQTVGLSTGHDNAVLRGDPATRSFSVVYLKGGKVVALDC-VNM  381 (415)
T ss_dssp             HHHHHHHHTTC-CCCCCCCCEEEEEETTEE-------EEEEECCTTCSEEEEEEEGGGTEEEEEEEETTEEEEEEE-ESC
T ss_pred             HHHHHHHhcCC-CCCCCCCCeeEeeeCCcE-------EEEEeCCCCCCEEEEEecCCCCeEEEEEEECCEEEEEEE-ECC
Confidence            99999999975 457999999999999864       888997643  566666664 679999999999999986 899


Q ss_pred             hHHhhHHHHHHhcCCCCChhhhcCCC
Q 011351          444 PEEFQLLPTLARSQPFVDKAKLQQAS  469 (488)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (488)
                      +.....+++||.++..+++..|.++.
T Consensus       382 ~~~~~~~~~~~~~~~~~~~~~l~~~~  407 (415)
T 3lxd_A          382 VKDYVQGKKLVEARAQIAPEQLADAG  407 (415)
T ss_dssp             HHHHHHHHHHHHHTCCCCHHHHTCTT
T ss_pred             hHHHHHHHHHHHCCCCCCHHHhcCCC
Confidence            99999999999999999988887764

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=100.00  E-value=6.9e-58  Score=459.37  Aligned_cols=394  Identities=29%  Similarity=0.476  Sum_probs=348.7

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (488)
                      +++|||||||+||++||.+|++.|+ +.+|+|||++++.+|.+|++++.++.... .+..+           .....+++
T Consensus         1 ~k~vvIIGaG~aGl~aA~~L~~~g~-~~~V~lie~~~~~~y~~~~l~~~~l~~~~-~~~~~-----------~~~~~~~~   67 (404)
T 3fg2_P            1 NDTVLIAGAGHAGFQVAVSLRQAKY-PGRIALINDEKHLPYQRPPLSKAYLKSGG-DPNSL-----------MFRPEKFF   67 (404)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTC-CSCEEEECCSSSSSBCSGGGGTGGGGSCC-CTTSS-----------BSSCHHHH
T ss_pred             CCCEEEEcChHHHHHHHHHHHhhCc-CCCEEEEeCCCCCCCCCccCCHHHHCCCC-CHHHc-----------cCCCHHHH
Confidence            3689999999999999999999997 67899999999999999999876654322 12221           24567889


Q ss_pred             HHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeE
Q 011351          131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKV  210 (488)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~v  210 (488)
                      .+.+++++. ++|+.++++.+.+++.+++.+.||+||+|||+.+. .+++++.+.++++++++..+...+...+..++++
T Consensus        68 ~~~~i~~~~-~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~p~-~~~i~g~~~~~v~~~~~~~d~~~l~~~~~~~~~v  145 (404)
T 3fg2_P           68 QDQAIELIS-DRMVSIDREGRKLLLASGTAIEYGHLVLATGARNR-MLDVPNASLPDVLYLRTLDESEVLRQRMPDKKHV  145 (404)
T ss_dssp             HHTTEEEEC-CCEEEEETTTTEEEESSSCEEECSEEEECCCEEEC-CCCSTTTTSTTEECCSSHHHHHHHHHHGGGCSEE
T ss_pred             HhCCCEEEE-EEEEEEECCCCEEEECCCCEEECCEEEEeeCCCcc-CCCCCCCCCCcEEEECCHHHHHHHHHHhhcCCeE
Confidence            999999998 89999999999999999999999999999999876 4566777778999999999999988888889999


Q ss_pred             EEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCC
Q 011351          211 VVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED  290 (488)
Q Consensus       211 vVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~  290 (488)
                      +|||+|.+|+|+|..+.+.|.+|+++++.++++++.+++.+.+.+.+.+++.||++++++.|++++.+ ++++..|.+++
T Consensus       146 vViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~v~~V~~~d  224 (404)
T 3fg2_P          146 VVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAAE-GDRVTGVVLSD  224 (404)
T ss_dssp             EEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETT
T ss_pred             EEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchhhccCHHHHHHHHHHHHhCCcEEEECCEEEEEEec-CCcEEEEEeCC
Confidence            99999999999999999999999999999999988889999999999999999999999999999854 56777899999


Q ss_pred             CcEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHH
Q 011351          291 GSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHC  370 (488)
Q Consensus       291 g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~  370 (488)
                      |++++||.||+|+|++|+.++++.+|+..++ +|.||++++|+.|+|||+|||+..+....|...+.++|..|..||+.+
T Consensus       225 G~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~-Gi~vd~~~~t~~~~iya~GD~a~~~~~~~g~~~~~~~~~~A~~qg~~a  303 (404)
T 3fg2_P          225 GNTLPCDLVVVGVGVIPNVEIAAAAGLPTAA-GIIVDQQLLTSDPHISAIGDCALFESVRFGETMRVESVQNATDQARCV  303 (404)
T ss_dssp             SCEEECSEEEECCCEEECCHHHHHTTCCBSS-SEEECTTSBCSSTTEEECGGGEEEEETTTTEEECCCSHHHHHHHHHHH
T ss_pred             CCEEEcCEEEECcCCccCHHHHHhCCCCCCC-CEEECCCcccCCCCEEEeecceeecCccCCceeeehHHHHHHHHHHHH
Confidence            9999999999999999999999999999885 599999999999999999999998877777777788999999999999


Q ss_pred             HHHHhcCCCCCCCCCCceeEeccccCCCCcceeeEEeeCCCC--cEEEEccCC-CcEEEEEEECCEEEEEEeecCChHHh
Q 011351          371 IKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--ETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEF  447 (488)
Q Consensus       371 a~~i~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~--~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~  447 (488)
                      |++|++. ..+|..+||||+++|+..       +++.|...+  +.+..++.+ .+|.++|+++|+|+|+++ .|++...
T Consensus       304 a~~i~g~-~~~~~~~p~~~~~~~~~~-------~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~  374 (404)
T 3fg2_P          304 AARLTGD-AKPYDGYPWFWSDQGDDK-------LQIVGLTAGFDQVVIRGSVAERSFSAFCYKAGKLIGIES-VNRAADH  374 (404)
T ss_dssp             HHHTTTC-CCCCCCCCEEEEEETTEE-------EEEEECCTTCCEEEEEEETTTTEEEEEEEETTEEEEEEE-ESCHHHH
T ss_pred             HHHhCCC-CCCCCCCCceEeEECCcE-------EEEEeCCCCCCEEEEEecCCCCcEEEEEEECCEEEEEEE-eCCHHHH
Confidence            9999975 467899999999999864       888897643  566677664 679999999999999986 8999999


Q ss_pred             hHHHHHHhcCCCCChhhhcCCCc
Q 011351          448 QLLPTLARSQPFVDKAKLQQASS  470 (488)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~~~~~  470 (488)
                      ..+++||.++..+++..|.++..
T Consensus       375 ~~~~~~~~~~~~~~~~~l~~~~~  397 (404)
T 3fg2_P          375 VFGRKILPLDKSVTPEQAADLSF  397 (404)
T ss_dssp             HHHHHHTTTTCCCCHHHHHCTTS
T ss_pred             HHHHHHHHcCCCCCHHHhcCCCC
Confidence            99999999999999988877643

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=100.00  E-value=5.9e-58  Score=460.34  Aligned_cols=391  Identities=27%  Similarity=0.447  Sum_probs=342.7

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (488)
                      +++|||||||+||++||.+|++.|+ +.+|+|||++++++|.+|++++.++..... ...+            ....+++
T Consensus         2 ~~~vvIIGaG~AGl~aA~~L~~~g~-~~~V~li~~~~~~~y~~~~l~~~~~~g~~~-~~~~------------~~~~~~~   67 (410)
T 3ef6_A            2 ATHVAIIGNGVGGFTTAQALRAEGF-EGRISLIGDEPHLPYDRPSLSKAVLDGSLE-RPPI------------LAEADWY   67 (410)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTC-CSEEEEEECSSSSSBCSGGGGTHHHHTSSS-SCCB------------SSCTTHH
T ss_pred             CCCEEEEcccHHHHHHHHHHHccCc-CCeEEEEECCCCCCcCCccccHHHhCCCCC-HHHh------------cCCHHHH
Confidence            4599999999999999999999997 667999999999999999998755432211 1111            2356788


Q ss_pred             HHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeE
Q 011351          131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKV  210 (488)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~v  210 (488)
                      ++.+++++.+++|+.+++..++|.+.+|+++.||+||||||+.++ .|+++|.+.++++++++..+...+.+.+..++++
T Consensus        68 ~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~p~-~~~ipG~~~~~v~~~~~~~d~~~l~~~~~~~~~v  146 (410)
T 3ef6_A           68 GEARIDMLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSRAR-TMALPGSQLPGVVTLRTYGDVQVLRDSWTSATRL  146 (410)
T ss_dssp             HHTTCEEEESCCEEEEETTTTEEEETTSCEEECSEEEECCCEEEC-CCCCTTTTSTTEECCCSHHHHHHHHHHCCTTCEE
T ss_pred             HHCCCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEccCCccc-CCCCCCccccceEEeccHHHHHHHHHHhccCCeE
Confidence            899999999999999999999999999999999999999999986 4567787788999999999998888877789999


Q ss_pred             EEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCC
Q 011351          211 VVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED  290 (488)
Q Consensus       211 vVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~  290 (488)
                      +|||+|++|+|+|..+.+.|.+|+++++.++++++.+++.+.+.+.+.+++.||++++++.|++++.+  +.+..+.+++
T Consensus       147 vViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~--~~~~~v~~~d  224 (410)
T 3ef6_A          147 LIVGGGLIGCEVATTARKLGLSVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSGE--GQLEQVMASD  224 (410)
T ss_dssp             EEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSHHHHCHHHHHHHHHHHHHHTCEEECSCCEEEEECS--SSCCEEEETT
T ss_pred             EEECCCHHHHHHHHHHHhCCCeEEEEecCCccchhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEecc--CcEEEEEECC
Confidence            99999999999999999999999999999999988789999999999999999999999999999853  3555789999


Q ss_pred             CcEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHH
Q 011351          291 GSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHC  370 (488)
Q Consensus       291 g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~  370 (488)
                      |++++||.||+|+|.+|++++++++|+..+ ++|.||++++|+.|+|||+|||+..+... |...+.++|..|..||+.+
T Consensus       225 g~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~-~gi~vd~~~~t~~~~IyA~GD~a~~~~~~-g~~~~~~~~~~A~~qg~~a  302 (410)
T 3ef6_A          225 GRSFVADSALICVGAEPADQLARQAGLACD-RGVIVDHCGATLAKGVFAVGDVASWPLRA-GGRRSLETYMNAQRQAAAV  302 (410)
T ss_dssp             SCEEECSEEEECSCEEECCHHHHHTTCCBS-SSEECCTTSBCSSTTEEECGGGEEEEBTT-SSEECCCCHHHHHHHHHHH
T ss_pred             CCEEEcCEEEEeeCCeecHHHHHhCCCccC-CeEEEccCeeECCCCEEEEEcceeccCCC-CCeeeechHHHHHHHHHHH
Confidence            999999999999999999999999999987 56999999999999999999999987755 6666678999999999999


Q ss_pred             HHHHhcCCCCCCCCCCceeEeccccCCCCcceeeEEeeCCCC--cEEEEccCC-CcEEEEEEECCEEEEEEeecCChHHh
Q 011351          371 IKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--ETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEF  447 (488)
Q Consensus       371 a~~i~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~--~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~  447 (488)
                      |++|++. ..+|..+||||+++|++.       +++.|...+  +.+..++.+ ..|.++|+++|+|+|+++ .|++...
T Consensus       303 a~~i~g~-~~~~~~~p~~~~~~~~~~-------~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~-~~~~~~~  373 (410)
T 3ef6_A          303 AAAILGK-NVSAPQLPVSWTEIAGHR-------MQMAGDIEGPGDFVSRGMPGSGAALLFRLQERRIQAVVA-VDAPRDF  373 (410)
T ss_dssp             HHHHTTC-CCCCCBCCEEEEEETTEE-------EEEESCSSSSSEEEEESCTTSSSEEEEEEETTEEEEEEE-ESCHHHH
T ss_pred             HHHHcCC-CCCCCCCCeeEEEECCce-------EEEEcCCCCCCEEEEEeeCCCCeEEEEEEECCEEEEEEE-ECChHHH
Confidence            9999975 467889999999999865       888887643  566677765 579999999999999996 8999999


Q ss_pred             hHHHHHHhcCCCCChhhhcCCC
Q 011351          448 QLLPTLARSQPFVDKAKLQQAS  469 (488)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~~~~  469 (488)
                      ..+++||.++..+++..|.++.
T Consensus       374 ~~~~~~i~~~~~~~~~~l~~~~  395 (410)
T 3ef6_A          374 ALATRLVEARAAIEPARLADLS  395 (410)
T ss_dssp             HHHHHHHHHTCBCCHHHHHCTT
T ss_pred             HHHHHHHhCCCCCCHHHhcCCC
Confidence            9999999999999998887664

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=100.00  E-value=6.7e-54  Score=433.23  Aligned_cols=405  Identities=28%  Similarity=0.470  Sum_probs=340.2

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      ++++|||||||+||+++|..|++.|+ +.+|+|||+++..+|.++++++.++.... ....+           .....++
T Consensus         3 ~~~~vvIIGgG~aGl~aA~~l~~~g~-~~~V~lie~~~~~~~~~~~l~~~~~~~~~-~~~~~-----------~~~~~~~   69 (431)
T 1q1r_A            3 ANDNVVIVGTGLAGVEVAFGLRASGW-EGNIRLVGDATVIPHHLPPLSKAYLAGKA-TAESL-----------YLRTPDA   69 (431)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSCCSCCBCSGGGGTTTTTTCS-CSGGG-----------BSSCHHH
T ss_pred             CCCcEEEEcCHHHHHHHHHHHHccCc-CCCEEEEECCCCCCCcCCCCcHHHhCCCC-ChHHh-----------cccCHHH
Confidence            45899999999999999999999987 56899999999999998888765543211 11111           1245678


Q ss_pred             HHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCc---EEEecCHHHHHHHHHhhhc
Q 011351          130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG---VHYIRDVADADALISSLEK  206 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~g---v~~~~~~~~~~~~~~~~~~  206 (488)
                      +++.+++++.+++|+.++++.++|++++|+++.||+||+|||+.+. .|+++|.+.++   ++++++..+...+.+.+..
T Consensus        70 ~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~p~-~~~i~G~~~~~~~~v~~~~~~~d~~~l~~~l~~  148 (431)
T 1q1r_A           70 YAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPR-PLPVASGAVGKANNFRYLRTLEDAECIRRQLIA  148 (431)
T ss_dssp             HHHTTEEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEEC-CCGGGTTHHHHSTTEEESSSHHHHHHHHHTCCT
T ss_pred             HHhCCCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEcCCCCcc-CCCCCCcccCCCceEEEECCHHHHHHHHHHhhc
Confidence            8899999999999999999989999999989999999999999886 45566655556   8888998888888777777


Q ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeC-CCCcEEE
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG-SDGRVAA  285 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~-~~~~v~~  285 (488)
                      +++++|||+|.+|+|+|..|.+.|.+|+++++.++++++.+++++.+.+.+.+++.||++++++++++++.. +++++..
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~  228 (431)
T 1q1r_A          149 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTA  228 (431)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccchhhHHHHHHHHHHHHhCCeEEEeCCEEEEEEeccCCCcEEE
Confidence            999999999999999999999999999999999999987789999999999999999999999999999852 3456667


Q ss_pred             EEeCCCcEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHH
Q 011351          286 VKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQ  365 (488)
Q Consensus       286 v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~  365 (488)
                      +.+++|+++++|.||+|+|.+|++++++++++..+ ++|.||++++|+.|+|||+|||+..+....|...+.++|..|..
T Consensus       229 v~~~~G~~i~~D~Vv~a~G~~p~~~l~~~~gl~~~-~gi~Vd~~~~ts~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~  307 (431)
T 1q1r_A          229 VLCEDGTRLPADLVIAGIGLIPNCELASAAGLQVD-NGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALE  307 (431)
T ss_dssp             EEETTSCEEECSEEEECCCEEECCHHHHHTTCCBS-SSEECCTTSBCSSTTEEECGGGEEEEETTTTEEEECCSHHHHHH
T ss_pred             EEeCCCCEEEcCEEEECCCCCcCcchhhccCCCCC-CCEEECCCcccCCCCEEEEEeEEEEccccCCceEeeCHHHHHHH
Confidence            88999999999999999999999999999999887 46999999999999999999999987665666666778999999


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCceeEeccccCCCCcceeeEEeeCCCC--cEEEEccCC-CcEEEEEEECCEEEEEEeecC
Q 011351          366 SAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--ETIEIGNFD-PKIATFWIDSGKLKGVLVESG  442 (488)
Q Consensus       366 ~g~~~a~~i~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~--~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~  442 (488)
                      ||+.+|++|++.. .+|..+|++|+++|+..       ++++|....  +....++.+ ..|.++|.++|+|+|+++ .+
T Consensus       308 qg~~aa~~i~g~~-~~~~~~p~~~~~~~~~~-------~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~-~g  378 (431)
T 1q1r_A          308 QARKIAAILCGKV-PRDEAAPWFWSDQYEIG-------LKMVGLSEGYDRIIVRGSLAQPDFSVFYLQGDRVLAVDT-VN  378 (431)
T ss_dssp             HHHHHHHHHTTCC-CCCCCCCEEEEEETTEE-------EEEEECCTTCSEEEEEEETTTTEEEEEEEETTEEEEEEE-ES
T ss_pred             HHHHHHHHhcCCC-CCCCCCCeEEEEECCce-------EEEEeCCCCCCEEEEEccCCCCeEEEEEEeCCEEEEEEE-EC
Confidence            9999999999744 57888999999988754       677776543  445555554 458888999999999996 78


Q ss_pred             ChHHhhHHHHHHhcCCCCChhhhcCC-CcHHHHHHHH
Q 011351          443 SPEEFQLLPTLARSQPFVDKAKLQQA-SSVEEALEIA  478 (488)
Q Consensus       443 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  478 (488)
                      +......++.++..+..++...|.++ ..+.+.++.+
T Consensus       379 ~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~  415 (431)
T 1q1r_A          379 RPVEFNQSKQIITDRLPVEPNLLGDESVPLKEIIAAA  415 (431)
T ss_dssp             CHHHHHHHHHHHHTTCCCCHHHHTCTTSCHHHHHHHH
T ss_pred             ChHHHHHHHHHHHCCCCCCHHHhhCCCCCHHHHHHHH
Confidence            88888889999999999998887665 3455554433

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=100.00  E-value=2.4e-55  Score=436.17  Aligned_cols=375  Identities=21%  Similarity=0.293  Sum_probs=317.2

Q ss_pred             CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCH
Q 011351           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP  127 (488)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (488)
                      ..++++|||||||+||++||.+|++.   +.+|+|||++++.+|.+|++++. +... ....++           ..+..
T Consensus         6 ~~~~~~~vIvGgG~AGl~aA~~L~~~---~~~itlie~~~~~~y~~~~l~~~-l~g~-~~~~~l-----------~~~~~   69 (385)
T 3klj_A            6 HHKSTKILILGAGPAGFSAAKAALGK---CDDITMINSEKYLPYYRPRLNEI-IAKN-KSIDDI-----------LIKKN   69 (385)
T ss_dssp             --CBCSEEEECCSHHHHHHHHHHTTT---CSCEEEECSSSSCCBCGGGHHHH-HHSC-CCGGGT-----------BSSCH
T ss_pred             ccCCCCEEEEcCcHHHHHHHHHHhCC---CCEEEEEECCCCCCcccChhhHH-HcCC-CCHHHc-----------cCCCH
Confidence            34578999999999999999999443   45999999999999999998863 3221 111111           24678


Q ss_pred             hHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcC
Q 011351          128 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA  207 (488)
Q Consensus       128 ~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~  207 (488)
                      +++++.+++++++++|+++|+++++|++++|+++.||+||||||+.|+ .|+++|.+  +++++++..+...+.+.+..+
T Consensus        70 ~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~~~yd~lvlAtG~~p~-~p~i~G~~--~v~~~~~~~d~~~l~~~l~~~  146 (385)
T 3klj_A           70 DWYEKNNIKVITSEFATSIDPNNKLVTLKSGEKIKYEKLIIASGSIAN-KIKVPHAD--EIFSLYSYDDALKIKDECKNK  146 (385)
T ss_dssp             HHHHHTTCEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEEC-CCCCTTCS--CEECCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEecCCCcC-CCCCCCCC--CeEEeCCHHHHHHHHHHhhcC
Confidence            899999999999999999999999999999999999999999999887 45567754  888999999998888877788


Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEE
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK  287 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~  287 (488)
                      ++++|||+|.+|+|+|..|++.|.+|+++++.++++++.+++.+.+.+.+.+++.||++++++.++++            
T Consensus       147 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i------------  214 (385)
T 3klj_A          147 GKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNFEEM------------  214 (385)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTTSCHHHHHHHHHHHHTTTCEEECSCCGGGC------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhCCCEEEeCCEEEEc------------
Confidence            99999999999999999999999999999999999998889999999999999999999999877665            


Q ss_pred             eCCCcEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHH
Q 011351          288 LEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSA  367 (488)
Q Consensus       288 l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g  367 (488)
                         |+++++|.||+|+|++|++++++++++..++ +|.||++++|+.|+|||+|||+.++...      ..+|..|..||
T Consensus       215 ---g~~~~~D~vv~a~G~~p~~~~~~~~gl~~~~-gi~vd~~~~t~~~~IyA~GD~a~~~~~~------~~~~~~A~~qg  284 (385)
T 3klj_A          215 ---GDLIRSSCVITAVGVKPNLDFIKDTEIASKR-GILVNDHMETSIKDIYACGDVAEFYGKN------PGLINIANKQG  284 (385)
T ss_dssp             ---HHHHHHSEEEECCCEEECCGGGTTSCCCBSS-SEEECTTCBCSSTTEEECGGGEEETTBC------CCCHHHHHHHH
T ss_pred             ---CeEEecCeEEECcCcccChhhhhhcCCCcCC-CEEECCCcccCCCCEEEEEeeEecCCCc------ccHHHHHHHHH
Confidence               5679999999999999999999999998874 5999999999999999999999976532      23788899999


Q ss_pred             HHHHHHHhcCCCCCCCC-CCceeEeccccCCCCcceeeEEeeCCCC---cEEEEccCCCcEEEEEEECCEEEEEEeecCC
Q 011351          368 QHCIKALLSAQTHTYDY-LPYFYSRVFEYEGSPRKVWWQFFGDNVG---ETIEIGNFDPKIATFWIDSGKLKGVLVESGS  443 (488)
Q Consensus       368 ~~~a~~i~~~~~~~~~~-~p~~~~~~~~~~g~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  443 (488)
                      +.+|++|++.. .+|.. +|++|+++|+..       ++++|....   +.+.....+..|.++|+++|+|+|+++ .|+
T Consensus       285 ~~aa~~i~g~~-~~~~~~~~~~~~~~~~~~-------~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~-~g~  355 (385)
T 3klj_A          285 EVAGLNACGED-ASYSEIIPSPILKVSGIS-------IISCGDIENNKPSKVFRSTQEDKYIVCMLKENKIDAAAV-IGD  355 (385)
T ss_dssp             HHHHHHHTTCC-CCCCCCCCCCEEEETTEE-------EEEESCCTTCCCSEEEEEECSSCEEEEEEETTEEEEEEE-ESC
T ss_pred             HHHHHHhcCCC-cCCCCCCCcEEEEeCCCc-------EEEEcCCCCCCCeEEEEECCCCeEEEEEEECCEEEEEEE-ECC
Confidence            99999999744 46665 699999999865       778887643   334342224679999999999999996 788


Q ss_pred             hHHhhHHHHHHhcCCCCChhhhcCCCcHHHHHHH
Q 011351          444 PEEFQLLPTLARSQPFVDKAKLQQASSVEEALEI  477 (488)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (488)
                      ......++.+|+++.+++..     ++++|.+..
T Consensus       356 ~~~~~~~~~~i~~~~~~~~~-----~~~~E~~~~  384 (385)
T 3klj_A          356 VSLGTKLKKAIDSSKSFDNI-----SSLDAILNN  384 (385)
T ss_dssp             HHHHHHHHHHHHTTCBCSCC-----SCHHHHHTT
T ss_pred             cHHHHHHHHHHHcCCCcccc-----cCHHHHHhh
Confidence            88888999999999877643     899998863

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=100.00  E-value=4.6e-54  Score=431.57  Aligned_cols=392  Identities=26%  Similarity=0.401  Sum_probs=328.6

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      ++++|+|||||+||+++|..|++.|+ +.+|+|||+++..+|.++.+++.++....  ..++             ... +
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~-~~~V~lie~~~~~~~~~~~~~~~~~~~~~--~~~~-------------~~~-~   68 (408)
T 2gqw_A            6 LKAPVVVLGAGLASVSFVAELRQAGY-QGLITVVGDEAERPYDRPPLSKDFMAHGD--AEKI-------------RLD-C   68 (408)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTC-CSCEEEEESSCSCCBCSGGGGTHHHHHCC--GGGS-------------BCC-C
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCC-CCeEEEEECCCCCcccCCCCCHHHhCCCc--hhhh-------------hHH-H
Confidence            46799999999999999999999987 56799999999999998887764442211  1111             011 4


Q ss_pred             HHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCC-CCCCCCcEEEecCHHHHHHHHHhhhcCC
Q 011351          130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEK-IGGYLPGVHYIRDVADADALISSLEKAK  208 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~-~g~~~~gv~~~~~~~~~~~~~~~~~~~~  208 (488)
                      +++.+++++.+++|+.++++.++|++.+|+++.||+||+|||+.+.. |++ +|.+ ++++++++..+...+.+.+..++
T Consensus        69 ~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~-~~i~~G~~-~~v~~~~~~~~~~~l~~~~~~~~  146 (408)
T 2gqw_A           69 KRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRA-LPTLQGAT-MPVHTLRTLEDARRIQAGLRPQS  146 (408)
T ss_dssp             TTSCSCEEEETCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECC-CGGGTTCS-SCEEECCSHHHHHHHHTTCCTTC
T ss_pred             HHHCCCEEEcCCEEEEEECCCCEEEECCCCEEECCEEEECCCCCCCC-CCccCCCC-CcEEEECCHHHHHHHHHHhhcCC
Confidence            56779999999889999999999999999899999999999998864 555 6765 78888899888888877666789


Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL  288 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l  288 (488)
                      +++|||+|.+|+|+|..|.+.|.+|+++++.++++++.+++++.+.+.+.+++.||++++++++++++ +  +   .|.+
T Consensus       147 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~-~--~---~v~~  220 (408)
T 2gqw_A          147 RLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSV-D--G---VVLL  220 (408)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEE-T--T---EEEE
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcccccccCHHHHHHHHHHHHHcCcEEEeCCEEEEEE-C--C---EEEE
Confidence            99999999999999999999999999999999999877899999999999999999999999999998 3  2   5778


Q ss_pred             CCCcEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHH
Q 011351          289 EDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQ  368 (488)
Q Consensus       289 ~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~  368 (488)
                      ++|+++++|.||+|+|.+|++++++++|+..++ +|.||++++|+.|+|||+|||+..+....|...+.++|..|..||+
T Consensus       221 ~~g~~i~~D~vi~a~G~~p~~~l~~~~gl~~~~-gi~Vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~  299 (408)
T 2gqw_A          221 DDGTRIAADMVVVGIGVLANDALARAAGLACDD-GIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGI  299 (408)
T ss_dssp             TTSCEEECSEEEECSCEEECCHHHHHHTCCBSS-SEECCTTCBCSSTTEEECGGGEEEEETTTTEEECCCCHHHHHHHHH
T ss_pred             CCCCEEEcCEEEECcCCCccHHHHHhCCCCCCC-CEEECCCCccCCCCEEEEEEEEEecCccCCceeeccHHHHHHHHHH
Confidence            899999999999999999999999999998874 5999999999999999999999987655565555678999999999


Q ss_pred             HHHHHHhcCCCCCCCCCCceeEeccccCCCCcceeeEEeeC-CCCcEEEEccCC---CcEEEEEEECCEEEEEEeecCCh
Q 011351          369 HCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGD-NVGETIEIGNFD---PKIATFWIDSGKLKGVLVESGSP  444 (488)
Q Consensus       369 ~~a~~i~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~-~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~  444 (488)
                      .+|+||++....+|..+|++|+++|+..       +.++|. ...+....++.+   ..|.++|.++|+|+|+++ .+..
T Consensus       300 ~aa~~i~g~~~~~~~~~p~~~~~~~~~~-------~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~-~g~~  371 (408)
T 2gqw_A          300 AVARHLVDPTAPGYAELPWYWSDQGALR-------IQVAGLASGDEEIVRGEVSLDAPKFTLIELQKGRIVGATC-VNNA  371 (408)
T ss_dssp             HHHHHHHCTTSCCCCCCCEEEEEETTEE-------EEEEECSCCSEEEEESCCCSSSCCEEEEEEETTEEEEEEE-ESCH
T ss_pred             HHHHHhcCCCCCcCCCCCeEEEEECCce-------EEEECCCCCCEEEEEccCCCCCCeEEEEEEeCCEEEEEEE-ECCh
Confidence            9999999754327888999999998764       677886 223445555543   568899999999999997 6777


Q ss_pred             HHhhHHHHHHhcCCCCChhhhcCCC-cHHHHH
Q 011351          445 EEFQLLPTLARSQPFVDKAKLQQAS-SVEEAL  475 (488)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  475 (488)
                      .....++.+|+++..++...+.++. .+.+.+
T Consensus       372 ~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~  403 (408)
T 2gqw_A          372 RDFAPLRRLLAVGAKPDRAALADPATDLRKLA  403 (408)
T ss_dssp             HHHHHHHHHHHTTCCCCHHHHHCTTCCHHHHH
T ss_pred             HHHHHHHHHHHCCCCCChHHhcCCCCCHHHHh
Confidence            8888999999999999988776664 444444

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=100.00  E-value=1.5e-51  Score=422.59  Aligned_cols=406  Identities=23%  Similarity=0.360  Sum_probs=309.0

Q ss_pred             CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCC--CCCC
Q 011351           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSG--GERQ  125 (488)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  125 (488)
                      ++.+++|||||||+||++||..|++.+. +.+|+|||++++++|.+|++++.++............+..+.+..  ....
T Consensus         8 ~~~~~~vvIIGgG~AGl~aA~~L~~~~~-g~~V~lie~~~~~~y~r~~lsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (493)
T 1m6i_A            8 APSHVPFLLIGGGTAAFAAARSIRARDP-GARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQ   86 (493)
T ss_dssp             CCSEEEEEEESCSHHHHHHHHHHHHHST-TCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSS
T ss_pred             CCCcCCEEEECChHHHHHHHHHHHhcCC-CCeEEEEeCCCCCCCCCCCCCHHhhcCCccchhhccccccccccccccccc
Confidence            3456899999999999999999999864 569999999999999999888766543221000000000000000  0000


Q ss_pred             CHhH---------HHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCC----CCcEEEec
Q 011351          126 TPEW---------YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY----LPGVHYIR  192 (488)
Q Consensus       126 ~~~~---------~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~----~~gv~~~~  192 (488)
                      ..++         +.+.+++++++++|+.+|++.++|++.+|+++.||+||||||+.++.+| .++..    .+++++++
T Consensus        87 ~~~~~~~~~~l~~~~~~gv~~~~g~~v~~id~~~~~V~~~~g~~i~yd~lviATGs~p~~~~-~~~~~~~~~~~~v~~~~  165 (493)
T 1m6i_A           87 PPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLS-AIDRAGAEVKSRTTLFR  165 (493)
T ss_dssp             CGGGSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEEECCCH-HHHTSCHHHHHTEEECC
T ss_pred             chHhhcchhhhhhhhcCCeEEEcCCEEEEEECCCCEEEECCCCEEECCEEEECCCCCCCCCC-CcccccccccCceEEEc
Confidence            1111         1356899999999999999999999999999999999999999886433 33321    35788889


Q ss_pred             CHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHh----CCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEc
Q 011351          193 DVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVG----WKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVK  268 (488)
Q Consensus       193 ~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~----~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~  268 (488)
                      +..++..+...+..+++++|||+|++|+|+|..|.+    .|.+|+++++.+.++.+.+++.+.+.+.+.+++.||++++
T Consensus       166 ~~~d~~~l~~~~~~~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~~~l~~~~~~~~~~~l~~~GV~v~~  245 (493)
T 1m6i_A          166 KIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMP  245 (493)
T ss_dssp             SHHHHHHHHHHHHHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEEC
T ss_pred             CHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcccccccCCHHHHHHHHHHHHhcCCEEEe
Confidence            998888888777789999999999999999999976    4788999999888888888999999999999999999999


Q ss_pred             CCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcCCccc--CCCEEeCCCCCCCCCCEEEEceeccc
Q 011351          269 GASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS--VGGIQVDGQFRTRMPGIFAIGDVAAF  346 (488)
Q Consensus       269 ~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~--~g~i~vd~~~~t~~~~Ifa~GD~a~~  346 (488)
                      ++.|++++.+ ++.+ .+.+.+|++++||.||+|+|.+|++++++.+|+..+  +|+|.||+++|| .|||||+|||+..
T Consensus       246 ~~~V~~i~~~-~~~~-~v~l~dG~~i~aD~Vv~a~G~~pn~~l~~~~gl~~~~~~ggi~Vd~~l~t-~~~IyA~GD~a~~  322 (493)
T 1m6i_A          246 NAIVQSVGVS-SGKL-LIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQA-RSNIWVAGDAACF  322 (493)
T ss_dssp             SCCEEEEEEE-TTEE-EEEETTSCEEEESEEEECCCEEECCTTHHHHTCCBCTTTCSEECCTTCEE-ETTEEECGGGEEE
T ss_pred             CCEEEEEEec-CCeE-EEEECCCCEEECCEEEECCCCCccHHHHHHcCCccccCCCcEEECCCccc-CCCeeEeeeeEec
Confidence            9999999853 3333 688899999999999999999999999999998876  479999999998 6999999999997


Q ss_pred             CCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCCCCceeEeccccCCCCc----ceeeEEeeCCCC-----c----
Q 011351          347 PLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPR----KVWWQFFGDNVG-----E----  413 (488)
Q Consensus       347 ~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~~~~~~p~~~~~~~~~~g~~~----~~~~~~~g~~~~-----~----  413 (488)
                      +....|.. ++++|+.|..||+.+|+||++ ...+|...|+||++++...+...    ...++++|....     +    
T Consensus       323 ~~~~~g~~-~~~~~~~A~~qg~~aa~ni~g-~~~~~~~~~~~~s~~~~~~~~~~~g~~~~~~~~~G~~~~~~~~~~~~~~  400 (493)
T 1m6i_A          323 YDIKLGRR-RVEHHDHAVVSGRLAGENMTG-AAKPYWHQSMFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSA  400 (493)
T ss_dssp             EETTTEEE-CCCCHHHHHHHHHHHHHHHTS-CCCCCCCCCEEEEESSTTCEEEEEECCCTTSCEEEEEECCCTTCSHHHH
T ss_pred             cCcccCcc-ccchHHHHHHHHHHHHHHhcC-CCCCcCCcCceeeeeccCcceEEEeccCCCcceEEeecccccccccccc
Confidence            76554543 467899999999999999996 45689999999999873211000    001223332100     0    


Q ss_pred             --------------------EEEE----c-------c-CCCcEEEEEEECCEEEEEEeecCChHHhhHHHHHHhcCCCCC
Q 011351          414 --------------------TIEI----G-------N-FDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVD  461 (488)
Q Consensus       414 --------------------~~~~----~-------~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  461 (488)
                                          ....    +       + ...+|.+||+++|+|+|+++ .|++..++.+++||+.+..++
T Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~li~~~~~~~  479 (493)
T 1m6i_A          401 TEQSGTGIRSESETESEASEITIPPSTPAVPQAPVQGEDYGKGVIFYLRDKVVVGIVL-WNIFNRMPIARKIIKDGEQHE  479 (493)
T ss_dssp             HHHHSCSCHHHHSCSCCCC--------------------CCEEEEEEEETTEEEEEEE-ESCCSCHHHHHHHHHHCCBCS
T ss_pred             cccccccccccccccccccccccccccccccccccccccCCcEEEEEEeCCEEEEEEE-ecCcchHHHHHHHHhCCCCCC
Confidence                                0000    0       1 12567889999999999986 888999999999998887665

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=100.00  E-value=1.3e-49  Score=402.10  Aligned_cols=393  Identities=20%  Similarity=0.271  Sum_probs=303.3

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHH
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYK  131 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (488)
                      +||||||||+||++||.+|++.|. +.+|+|||++++.+|.++.++. ++..........          ......++++
T Consensus         1 PKVvIIG~G~AGl~aA~~l~~~g~-~~~V~lie~~~~~~~~~~~l~~-~~~~~~~~~~~~----------~~~~~~~~~~   68 (437)
T 4eqs_A            1 PKIVVVGAVAGGATCASQIRRLDK-ESDIIIFEKDRDMSFANCALPY-VIGEVVEDRRYA----------LAYTPEKFYD   68 (437)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHCS-SSCEEEEESSSCSSBCGGGHHH-HHTTSSCCGGGT----------BCCCHHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCC-CCcEEEEeCCCCCCCCcchhHH-HHcCCccchhhh----------hhcCHHHHHH
Confidence            479999999999999999999986 6789999999999998877654 221111100000          0123457788


Q ss_pred             HCCCeEEeCCcEEEEeCCCcEEEeCCC-----cEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhh-
Q 011351          132 EKGIEMIYQDPVTSIDIEKQTLITNSG-----KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE-  205 (488)
Q Consensus       132 ~~~i~~~~~~~v~~id~~~~~v~~~~g-----~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~-  205 (488)
                      +.+++++.+++|+.+|++.+.+.+.++     .++.||+||||||++|+. |.++   .++++.+++..++..+.+.+. 
T Consensus        69 ~~~i~~~~~~~V~~id~~~~~~~~~~~~~~~~~~~~yd~lVIATGs~p~~-p~i~---g~~~~~~~~~~~~~~l~~~~~~  144 (437)
T 4eqs_A           69 RKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANS-LGFE---SDITFTLRNLEDTDAIDQFIKA  144 (437)
T ss_dssp             HHCCEEEETEEEEEEETTTTEEEEEETTTTEEEEEECSEEEECCCEEECC-CCCC---CTTEECCSSHHHHHHHHHHHHH
T ss_pred             hcCCEEEeCCeEEEEEccCcEEEEEeccCCceEEEEcCEEEECCCCcccc-cccc---CceEEeeccHHHHHHHHHhhhc
Confidence            999999999999999999988776432     368999999999998764 4333   356788888888887766543 


Q ss_pred             -cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEE
Q 011351          206 -KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA  284 (488)
Q Consensus       206 -~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~  284 (488)
                       .+++++|||+|.+|+|+|..+.++|.+|+++++.+++++. +++++.+.+.+.++++||++++++++++++..      
T Consensus       145 ~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~-~d~~~~~~~~~~l~~~gV~i~~~~~v~~~~~~------  217 (437)
T 4eqs_A          145 NQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKL-MDADMNQPILDELDKREIPYRLNEEINAINGN------  217 (437)
T ss_dssp             HTCCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTT-SCGGGGHHHHHHHHHTTCCEEESCCEEEEETT------
T ss_pred             cCCcEEEEECCccchhhhHHHHHhcCCcceeeeeecccccc-ccchhHHHHHHHhhccceEEEeccEEEEecCC------
Confidence             5789999999999999999999999999999999999974 79999999999999999999999999998743      


Q ss_pred             EEEeCCCcEEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHH
Q 011351          285 AVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHA  363 (488)
Q Consensus       285 ~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A  363 (488)
                      .+.+++|+++++|.|++|+|++||+++++..|+..+ +|+|.||+++||++|||||+|||+..+....+.......+..|
T Consensus       218 ~v~~~~g~~~~~D~vl~a~G~~Pn~~~~~~~gl~~~~~G~I~vd~~~~Ts~p~IyA~GDva~~~~~~~~~~~~~~~a~~A  297 (437)
T 4eqs_A          218 EITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPASVPLAWGA  297 (437)
T ss_dssp             EEEETTSCEEECSEEEECCCEEESCGGGTTSSCCCCTTSCEECCTTCBCSSTTEEECGGGEEEEBSSSSSEECCCSHHHH
T ss_pred             eeeecCCeEEeeeeEEEEeceecCcHHHHhhhhhhccCCcEecCCCccCCCCCEEEEEEccCcccccCCccccchhHHHH
Confidence            578899999999999999999999999999999876 6779999999999999999999999988777777767788899


Q ss_pred             HHHHHHHHHHHhcCCCCCC-CCCCceeEeccccCCCCcceeeEEeeCCCCc-------EEE--Ecc-------CCCcEEE
Q 011351          364 RQSAQHCIKALLSAQTHTY-DYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TIE--IGN-------FDPKIAT  426 (488)
Q Consensus       364 ~~~g~~~a~~i~~~~~~~~-~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~-------~~~--~~~-------~~~~~~~  426 (488)
                      .+||+.+|+||++.....+ ...+..+...++.+       +..+|....+       ...  ...       -...+.|
T Consensus       298 ~~~g~~~a~ni~g~~~~~~~~~~~~~~~~~~~p~-------ia~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~K  370 (437)
T 4eqs_A          298 HRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYT-------FASVGVKPNELKQFDYKMVEVTQGAHANYYPGNSPLHLR  370 (437)
T ss_dssp             HHHHHHHHHHHHSCTTCCCCCBCCCEEEEETTEE-------EEEEESCGGGGGGSCEEEEEEEEESSCTTSSSCCEEEEE
T ss_pred             HHHHHHHHHHHcCCCCcccccceeEEeeeeccce-------EEEeeCCHHHHHhCCceEEEEecCCchhhcCCCCcEEEE
Confidence            9999999999998654443 23333333333322       4445543321       111  111       0124677


Q ss_pred             EEEE--CCEEEEEEeecCC-hHHhhHH-HHHHhcCCCCCh-hhh--cCCCcHHHH
Q 011351          427 FWID--SGKLKGVLVESGS-PEEFQLL-PTLARSQPFVDK-AKL--QQASSVEEA  474 (488)
Q Consensus       427 ~~~~--~~~~~g~~~~~~~-~~~~~~~-~~~~~~~~~~~~-~~~--~~~~~~~~~  474 (488)
                      +.++  +++|+|+++++.+ ++++... ..+|+++.+++. ..+  ..||+++++
T Consensus       371 li~d~~~~~ilGa~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~yhP~~s~~  425 (437)
T 4eqs_A          371 VYYDTSNRQILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEFEVAFAPPYSHP  425 (437)
T ss_dssp             EEEETTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBGGGGGGCCCCCCTTTCCS
T ss_pred             EEEECCCCEEEEEEEECcCCHHHHHHHHHHHHHcCCcHHHHhcCccccCCCCCch
Confidence            7774  5899999987764 6666554 556788888763 332  446877765

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=2.4e-48  Score=384.17  Aligned_cols=354  Identities=23%  Similarity=0.388  Sum_probs=280.9

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (488)
                      ..||+|||||+||++||..|++.|    +|+|||+++..+|.++.+++ ++.. ......+           .....+++
T Consensus         8 ~~~vvIIGgG~AGl~aA~~l~~~g----~V~lie~~~~~~~~~~~l~~-~~~g-~~~~~~~-----------~~~~~~~~   70 (367)
T 1xhc_A            8 GSKVVIVGNGPGGFELAKQLSQTY----EVTVIDKEPVPYYSKPMLSH-YIAG-FIPRNRL-----------FPYSLDWY   70 (367)
T ss_dssp             -CEEEEECCSHHHHHHHHHHTTTS----EEEEECSSSSCCCCSTTHHH-HHTT-SSCGGGG-----------CSSCHHHH
T ss_pred             CCcEEEECCcHHHHHHHHHHhhcC----CEEEEECCCCCccccchhHH-HHhC-CCCHHHh-----------ccCCHHHH
Confidence            469999999999999999998875    89999999988888777664 2221 1111111           23457788


Q ss_pred             HHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeE
Q 011351          131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKV  210 (488)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~v  210 (488)
                      ++.+++++.+++|+.+|++.++|+ .+++++.||+||||||+.|. .|+++|  .++++++++..+...+.+.+..++++
T Consensus        71 ~~~~v~~~~g~~v~~id~~~~~V~-~~g~~~~~d~lViATGs~p~-~p~i~G--~~~v~~~~~~~~~~~l~~~~~~~~~v  146 (367)
T 1xhc_A           71 RKRGIEIRLAEEAKLIDRGRKVVI-TEKGEVPYDTLVLATGARAR-EPQIKG--KEYLLTLRTIFDADRIKESIENSGEA  146 (367)
T ss_dssp             HHHTEEEECSCCEEEEETTTTEEE-ESSCEEECSEEEECCCEEEC-CCCSBT--GGGEECCCSHHHHHHHHHHHHHHSEE
T ss_pred             HhCCcEEEECCEEEEEECCCCEEE-ECCcEEECCEEEECCCCCCC-CCCCCC--cCCEEEEcCHHHHHHHHHHhhcCCcE
Confidence            899999999888999999988888 77888999999999999887 455566  56788888888888877766667999


Q ss_pred             EEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCC
Q 011351          211 VVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED  290 (488)
Q Consensus       211 vVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~  290 (488)
                      +|||+|++|+|+|..|.++|.+|+++++.+++++  +++++.+.+.+.+++.||++++++++++++.   .   .+.+++
T Consensus       147 vViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~--~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~---~---~v~~~~  218 (367)
T 1xhc_A          147 IIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG--LDEELSNMIKDMLEETGVKFFLNSELLEANE---E---GVLTNS  218 (367)
T ss_dssp             EEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT--CCHHHHHHHHHHHHHTTEEEECSCCEEEECS---S---EEEETT
T ss_pred             EEECCCHHHHHHHHHHHhCCCEEEEEeCCCeecc--CCHHHHHHHHHHHHHCCCEEEcCCEEEEEEe---e---EEEECC
Confidence            9999999999999999999999999999999987  8999999999999999999999999999972   1   477888


Q ss_pred             CcEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHH
Q 011351          291 GSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHC  370 (488)
Q Consensus       291 g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~  370 (488)
                      |+ +++|.|++|+|++|+++++++++++.+ ++|.||+++||+.|||||+|||+......      ...+..|..||+.+
T Consensus       219 g~-i~~D~vi~a~G~~p~~~ll~~~gl~~~-~gi~Vd~~~~t~~~~IyA~GD~a~~~~~~------~~~~~~A~~qg~~a  290 (367)
T 1xhc_A          219 GF-IEGKVKICAIGIVPNVDLARRSGIHTG-RGILIDDNFRTSAKDVYAIGDCAEYSGII------AGTAKAAMEQARVL  290 (367)
T ss_dssp             EE-EECSCEEEECCEEECCHHHHHTTCCBS-SSEECCTTSBCSSTTEEECGGGEEBTTBC------CCSHHHHHHHHHHH
T ss_pred             CE-EEcCEEEECcCCCcCHHHHHhCCCCCC-CCEEECCCcccCCCCEEEeEeeeecCCCC------ccHHHHHHHHHHHH
Confidence            88 999999999999999999999999887 56999999999999999999999764321      23677899999999


Q ss_pred             HHHHhcCCCCCCCCCCcee-EeccccCCCCcceeeEEeeCCCCcEEEEccCCCcEEEEEEECCEEEEEEeecCChHHhhH
Q 011351          371 IKALLSAQTHTYDYLPYFY-SRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQL  449 (488)
Q Consensus       371 a~~i~~~~~~~~~~~p~~~-~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  449 (488)
                      |+||++. ..+|...+.+| ..+++..       +..+|....+....    ..|.++++++++|+|+++ .+.......
T Consensus       291 a~~i~g~-~~~~~~~~~~~~~~~~~~~-------~~~vG~~~~~~~~~----~~~~k~~~~~~~ilG~~~-~g~~~~~~~  357 (367)
T 1xhc_A          291 ADILKGE-PRRYNFKFRSTVFKFGKLQ-------IAIIGNTKGEGKWI----EDNTKVFYENGKIIGAVV-FNDIRKATK  357 (367)
T ss_dssp             HHHHTTC-CCCCCSSCCEEEEEETTEE-------EEEEECCSSCEEEE----ETTEEEEC-----CEEEE-ESCHHHHHH
T ss_pred             HHHhcCC-CccCCCCCCceEEEECCce-------EEEECCCCCCCccc----ceEEEEEEECCEEEEEEE-ECChHHHHH
Confidence            9999974 35566654444 3555432       66778765432211    447888888999999997 677777888


Q ss_pred             HHHHH
Q 011351          450 LPTLA  454 (488)
Q Consensus       450 ~~~~~  454 (488)
                      +++++
T Consensus       358 ~~~~i  362 (367)
T 1xhc_A          358 LEKEI  362 (367)
T ss_dssp             HC---
T ss_pred             HHHHH
Confidence            88876

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=100.00  E-value=3.4e-48  Score=396.78  Aligned_cols=411  Identities=22%  Similarity=0.320  Sum_probs=289.4

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (488)
                      +++|+|||||+||++||..|++.+. +.+|+|||+++..+|.++.++. ++.........+....    .. .....+++
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~-g~~Vtvie~~~~~~~~~~gl~~-~~~g~~~~~~~~~~~~----~~-~~~~~~~~   75 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDP-EAHVTMIDQASRISYGGCGIPY-YVSGEVSNIESLQATP----YN-VVRDPEFF   75 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCT-TSEEEEECCC--------------------------------------------
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCc-CCCEEEEECCCcccccccccch-hhcCCCCchHHhcccc----ch-hccCHHHH
Confidence            5799999999999999999999843 4499999999998888765553 2211111111110000    00 01223344


Q ss_pred             H-HCCCeEEeCCcEEEEeCCCcEEEeCC---Cc--EEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhh
Q 011351          131 K-EKGIEMIYQDPVTSIDIEKQTLITNS---GK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL  204 (488)
Q Consensus       131 ~-~~~i~~~~~~~v~~id~~~~~v~~~~---g~--~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~  204 (488)
                      . +.+++++.+++|+.++++.+.+.+.+   |+  .+.||+||+|||+.+. .|+++|.+.++++++++..+...+.+.+
T Consensus        76 ~~~~gi~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~-~p~i~G~~~~~v~~~~~~~~~~~l~~~l  154 (472)
T 3iwa_A           76 RINKDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKAN-RPPVEGMDLAGVTPVTNLDEAEFVQHAI  154 (472)
T ss_dssp             -----CEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEEC-CCSCTTTTSBTEEECCSHHHHHHHHHHC
T ss_pred             hhhcCcEEEECCEEEEEECCCCEEEEeecCCCCEEEEECCEEEEeCCCCcC-CCCCCCCCCCCEEEeCCHHHHHHHHHHh
Confidence            4 57999999999999999998888764   65  7899999999999876 4667777678888888888887777655


Q ss_pred             h--cCCeEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCC
Q 011351          205 E--KAKKVVVVGGGYIGMEVAAAAVGW-KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG  281 (488)
Q Consensus       205 ~--~~~~vvVvG~G~~g~e~A~~l~~~-g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~  281 (488)
                      .  .+++++|||+|.+|+|+|..+.+. |.+|+++++.++++++.+++++.+.+.+.+++.||+++++++|++++.. ++
T Consensus       155 ~~~~~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~  233 (472)
T 3iwa_A          155 SAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLEGE-NG  233 (472)
T ss_dssp             CTTSCSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSSTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEES-SS
T ss_pred             hcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcccccccCHHHHHHHHHHHHhcCCEEEeCCEEEEEEcc-CC
Confidence            3  478999999999999999999999 9999999999999986789999999999999999999999999999863 45


Q ss_pred             cEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccH
Q 011351          282 RVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHV  360 (488)
Q Consensus       282 ~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~  360 (488)
                      .+ .+.+.+|+++++|.||+|+|++|++++++++|+..+ +|+|.||++++|+.|||||+|||+..+....|......++
T Consensus       234 ~v-~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~g~~~~~~~~  312 (472)
T 3iwa_A          234 KV-ARVITDKRTLDADLVILAAGVSPNTQLARDAGLELDPRGAIIVDTRMRTSDPDIFAGGDCVTIPNLVTGKPGFFPLG  312 (472)
T ss_dssp             BE-EEEEESSCEEECSEEEECSCEEECCHHHHHHTCCBCTTCCEECCTTCBCSSTTEEECGGGEEEEBTTTSSEECCCCT
T ss_pred             eE-EEEEeCCCEEEcCEEEECCCCCcCHHHHHhCCccCCCCCCEEECCCcccCCCCEEEeccceecccccCCceeecchH
Confidence            55 377889999999999999999999999988899875 6889999999999999999999998777655654445577


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCCCCceeEeccccCCCCcceeeEEeeCCCCc-------E--EEEc---------cCCC
Q 011351          361 DHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------T--IEIG---------NFDP  422 (488)
Q Consensus       361 ~~A~~~g~~~a~~i~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~-------~--~~~~---------~~~~  422 (488)
                      ..|..||+.+|+||++........+|++|+.+++..       +..+|....+       .  ....         ....
T Consensus       313 ~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~-------~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~  385 (472)
T 3iwa_A          313 SMANRQGRVIGTNLADGDATFPGAVGSWAVKLFEGS-------ASGAGLTVEGALREGYDAVNVHVEQFDRAHFYPEKTI  385 (472)
T ss_dssp             THHHHHHHHHHHHHTTCCCCCCCBCCCEEEECSSCE-------EEEEECCHHHHHHTTCCEEEEEEEC-----------C
T ss_pred             HHHHHHHHHHHHHhcCCCccCCCCCcceEEEECCce-------eEEEECCHHHHHHcCCceEEEEEecCCccCccCCCce
Confidence            789999999999999755433335677887777643       5556654321       1  1110         1123


Q ss_pred             cEEEEEEE--CCEEEEEEeecC---ChHH-hhHHHHHHhcCCCCC-hhh-hcCC-CcHHHHHHHH
Q 011351          423 KIATFWID--SGKLKGVLVESG---SPEE-FQLLPTLARSQPFVD-KAK-LQQA-SSVEEALEIA  478 (488)
Q Consensus       423 ~~~~~~~~--~~~~~g~~~~~~---~~~~-~~~~~~~~~~~~~~~-~~~-~~~~-~~~~~~~~~~  478 (488)
                      .+.|+.++  +++|+|+++++.   .+.+ +..+..+|+++.+++ ... .+.+ |+++|++...
T Consensus       386 ~~~kli~~~~~~~ilG~~~~g~~~~~~~~~i~~~~~ai~~~~t~~~l~~~~~~~~P~~~~~~~~~  450 (472)
T 3iwa_A          386 MTLQLVVDRPTRRVLGIQGFSTLGDALTARINAVATMLASKPTVEDISNAEVVYSPPFASAMDIV  450 (472)
T ss_dssp             EEEEEEEETTTCBEEEEEEEESCHHHHHHHHHHHHHHHTTCCBHHHHHTCCCC--------CCHH
T ss_pred             EEEEEEEECCCCEEEEEEEECCCcccHHHHHHHHHHHHHcCCCHHHHhcccccCCCCCCCcccHH
Confidence            47788774  699999998666   2234 445566678888876 333 3444 8888876544

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=100.00  E-value=5.5e-48  Score=392.96  Aligned_cols=397  Identities=19%  Similarity=0.223  Sum_probs=300.8

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHH
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYK  131 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (488)
                      +||+|||||+||++||.+|++.+. +.+|+|||+++...|.++.+.. ++.........+           .....+++.
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~-g~~V~vie~~~~~g~~~~~~~~-~~~~~~~~~~~~-----------~~~~~~~~~   69 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYP-QAEISLIDKQATVGYLSGGLSA-YFNHTINELHEA-----------RYITEEELR   69 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCS-SSEEEEECSSSCCSSCCC----------------------------CCCCHHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCc-CCcEEEEECCCCCcccCccchh-hhcCCCCCHHHh-----------hcCCHHHHH
Confidence            699999999999999999999843 4499999999988876554432 221111111111           134678889


Q ss_pred             HCCCeEEeCCcEEEEeCCCcEEEeC---CCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCC
Q 011351          132 EKGIEMIYQDPVTSIDIEKQTLITN---SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAK  208 (488)
Q Consensus       132 ~~~i~~~~~~~v~~id~~~~~v~~~---~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~  208 (488)
                      +.+++++.+++|+.++++.+.+.+.   ++.++.||+||||||+.|. .|+++|.+.+++++.++..+...+.+....++
T Consensus        70 ~~gi~~~~~~~V~~id~~~~~v~v~~~~~~~~~~~d~lviAtG~~p~-~p~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~  148 (452)
T 3oc4_A           70 RQKIQLLLNREVVAMDVENQLIAWTRKEEQQWYSYDKLILATGASQF-STQIRGSQTEKLLKYKFLSGALAAVPLLENSQ  148 (452)
T ss_dssp             HTTEEEECSCEEEEEETTTTEEEEEETTEEEEEECSEEEECCCCCBC-CCCCBTTTCTTEEEGGGCC----CCHHHHTCS
T ss_pred             HCCCEEEECCEEEEEECCCCEEEEEecCceEEEEcCEEEECCCcccC-CCCCCCCCCCCEEEeCCHHHHHHHHHHHhcCC
Confidence            9999999999999999999888763   5567999999999999887 46677877788888887777777666667899


Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL  288 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l  288 (488)
                      +++|||+|.+|+|+|..|.+.|.+|+++++.++++++.+++++.+.+.+.+++.||+++++++|++++.. ++.+ .+.+
T Consensus       149 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~v-~v~~  226 (452)
T 3oc4_A          149 TVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIEET-ANGI-VLET  226 (452)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTCCHHHHHHHHHHHHTTTEEEEETCCEEEEEEC-SSCE-EEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccccccCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEcc-CCeE-EEEE
Confidence            9999999999999999999999999999999999987789999999999999999999999999999854 4455 6777


Q ss_pred             CCCcEEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHH
Q 011351          289 EDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSA  367 (488)
Q Consensus       289 ~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g  367 (488)
                      ++| ++++|.||+|+|++|++++++.. +..+ +|+|.||+++||+.|+|||+|||+..+....+.......+..|..||
T Consensus       227 ~~g-~i~aD~Vv~A~G~~p~~~~l~~~-~~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~~g  304 (452)
T 3oc4_A          227 SEQ-EISCDSGIFALNLHPQLAYLDKK-IQRNLDQTIAVDAYLQTSVPNVFAIGDCISVMNEPVAETFYAPLVNNAVRTG  304 (452)
T ss_dssp             SSC-EEEESEEEECSCCBCCCSSCCTT-SCBCTTSCBCCCTTCBCSSTTEEECGGGBCEEEGGGTEEECCCCHHHHHHHH
T ss_pred             CCC-EEEeCEEEECcCCCCChHHHHhh-hccCCCCCEEECcCccCCCCCEEEEEeeEEeccccCCceeecchHHHHHHHH
Confidence            777 89999999999999999887654 5554 67899999999999999999999987655445444445788899999


Q ss_pred             HHHHHHHhcCCCCCCC-CCCceeEeccccCCCCcceeeEEeeCCCCc-------E--EEEc-------cCCCcEEEEEEE
Q 011351          368 QHCIKALLSAQTHTYD-YLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------T--IEIG-------NFDPKIATFWID  430 (488)
Q Consensus       368 ~~~a~~i~~~~~~~~~-~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~-------~--~~~~-------~~~~~~~~~~~~  430 (488)
                      +.+|.||++.. ..+. ..+..++.+|+..       +..+|....+       .  ....       .....+.|+.++
T Consensus       305 ~~aa~~i~g~~-~~~~~~~~~~~~~~~~~~-------~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~kli~~  376 (452)
T 3oc4_A          305 LVVANNLEEKT-HRFIGSLRTMGTKVGDYY-------LASTGLTETEGLFFPQTLASIIVRQPAPPLQHGTEILGKLIYD  376 (452)
T ss_dssp             HHHTTSSSSCC-CCCCCCCCCEEEEETTEE-------EEEEECCSGGGGGSSSCEEEEEEEEECTTTTCSCEEEEEEEEE
T ss_pred             HHHHHHhcCCC-ccCCCccccEEEEEcCee-------EEEecCCHHHHHHCCCceEEEEEecCCccCCCCCeEEEEEEEE
Confidence            99999999753 3333 2345566777642       5556654321       1  1110       112357888876


Q ss_pred             C--CEEEEEEeecC-ChHHhh-HHHHHHhcCCCCC-hhh--hcCCCcHHHH
Q 011351          431 S--GKLKGVLVESG-SPEEFQ-LLPTLARSQPFVD-KAK--LQQASSVEEA  474 (488)
Q Consensus       431 ~--~~~~g~~~~~~-~~~~~~-~~~~~~~~~~~~~-~~~--~~~~~~~~~~  474 (488)
                      .  ++|+|+++++. ++.++. .+..+|+++.+++ ...  +..||+++|+
T Consensus       377 ~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~P~~~~~  427 (452)
T 3oc4_A          377 KVTQRVLGAQLCSKNNCLEKINTLALSIQTGQTLTDLLQKDYFYQPSLTNI  427 (452)
T ss_dssp             TTTCBEEEEEEEESSCCTHHHHHHHHHHHTTCBHHHHHTCCCCCCTTTSCS
T ss_pred             CCCCEEEEEEEEeCCCHHHHHHHHHHHHHcCCCHHHHHhhHhccCCCCCCc
Confidence            4  99999998776 566644 5566788888876 332  4678888873

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=100.00  E-value=1.8e-48  Score=396.73  Aligned_cols=403  Identities=20%  Similarity=0.262  Sum_probs=310.8

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCC--CCCCCCCcccccCCCCCCCCHhH
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDK--KPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      +||+|||||+||+++|..|++.+. +.+|+|||+++..+|....+.. ++.....  .+..           ......++
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~-g~~V~lie~~~~~~~~~~~~~~-~~~g~~~~~~~~~-----------~~~~~~~~   67 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHP-DADVTAYEMNDNISFLSCGIAL-YLGKEIKNNDPRG-----------LFYSSPEE   67 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCT-TCEEEEEESSSCCCBCGGGHHH-HHTTCBGGGCGGG-----------GBSCCHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCc-CCcEEEEECCCCCCcccccchh-hhcCCcccCCHHH-----------hhhcCHHH
Confidence            489999999999999999999832 3499999999876665332211 1111000  0111           12345677


Q ss_pred             HHHCCCeEEeCCcEEEEeCCCcEEEeCC-----CcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhh
Q 011351          130 YKEKGIEMIYQDPVTSIDIEKQTLITNS-----GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL  204 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~~v~~~~-----g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~  204 (488)
                      +++.+++++.+++|+.++.+.+++.+.+     ++++.||+||+|||+.+. .|+++|.+.++++++++..+...+.+..
T Consensus        68 ~~~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtGs~p~-~p~i~g~~~~~v~~~~~~~~~~~~~~~~  146 (452)
T 2cdu_A           68 LSNLGANVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPT-VPPIPGIDSSRVYLCKNYNDAKKLFEEA  146 (452)
T ss_dssp             HHHTTCEEEESEEEEEEEGGGTEEEEEETTTCCEEEEECSEEEECCCEEEC-CCCCTTTTSTTEEECSSHHHHHHHHHHG
T ss_pred             HHHcCCEEEeCCEEEEEEcCCCEEEEEecCCCceEEEECCEEEEccCCCcC-CCCCCCCCCCCEEEeCcHHHHHHHHHHh
Confidence            8889999988888999998888887754     467999999999999886 4566776667899999999998888888


Q ss_pred             hcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEE
Q 011351          205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA  284 (488)
Q Consensus       205 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~  284 (488)
                      ..+++++|||+|.+|+|+|..|.+.|.+|+++++.++++++.+++++.+.+.+.+++.||+++++++|++++.. ++++.
T Consensus       147 ~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~~v~  225 (452)
T 2cdu_A          147 PKAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFEEV-DDEII  225 (452)
T ss_dssp             GGCSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEESSCEEEEEEE-TTEEE
T ss_pred             ccCCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhhhhhhhhHHHHHHHHHHHCCCEEEcCCeeEEEEcC-CCeEE
Confidence            88999999999999999999999999999999999999987789999999999999999999999999999853 45554


Q ss_pred             EEEeCCCcEEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHH
Q 011351          285 AVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHA  363 (488)
Q Consensus       285 ~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A  363 (488)
                      .+.+ +|+++++|.||+|+|++|++++++.. +..+ +|+|.||+++||+.|||||+|||+..+....+......++..|
T Consensus       226 ~v~~-~g~~i~~D~vv~a~G~~p~~~ll~~~-l~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A  303 (452)
T 2cdu_A          226 TKTL-DGKEIKSDIAILCIGFRPNTELLKGK-VAMLDNGAIITDEYMHSSNRDIFAAGDSAAVHYNPTNSNAYIPLATNA  303 (452)
T ss_dssp             EEET-TSCEEEESEEEECCCEEECCGGGTTT-SCBCTTSCBCCCTTSBCSSTTEEECSTTBCEEETTTTEEECCCCHHHH
T ss_pred             EEEe-CCCEEECCEEEECcCCCCCHHHHHHh-hhcCCCCCEEECCCcCcCCCCEEEcceEEEeccccCCCeeecchHHHH
Confidence            5555 78889999999999999999988877 7764 6779999999999999999999999766555554445688899


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCceeEeccccCCCCcceeeEEeeCCCC-------cEE---E--Ec------cCCCcEE
Q 011351          364 RQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETI---E--IG------NFDPKIA  425 (488)
Q Consensus       364 ~~~g~~~a~~i~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~-------~~~---~--~~------~~~~~~~  425 (488)
                      ..||+.+|+||++.........|++|+.+|+..       +..+|....       +..   .  ..      .....+.
T Consensus       304 ~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~-------~~~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  376 (452)
T 2cdu_A          304 VRQGRLVGLNLTEDKVKDMGTQSSSGLKLYGRT-------YVSTGINTALAKANNLKVSEVIIADNYRPEFMLSTDEVLM  376 (452)
T ss_dssp             HHHHHHHHHTSSSCCCCCCCBCCCEEEEETTEE-------EEEEECCHHHHHHTTCCCEEEEEEEESSCTTBSCCCEEEE
T ss_pred             HHHHHHHHHHhCCCCCcCCCccceEEEEECCee-------eEeecCCHHHHHHcCCceEEEEEecCCccccCCCCceEEE
Confidence            999999999999743222334678888888643       556665431       111   0  00      1112467


Q ss_pred             EEEEE--CCEEEEEEeecC-ChHHh-hHHHHHHhcCCCCCh-hh--hcCCCcHHHHHHHH
Q 011351          426 TFWID--SGKLKGVLVESG-SPEEF-QLLPTLARSQPFVDK-AK--LQQASSVEEALEIA  478 (488)
Q Consensus       426 ~~~~~--~~~~~g~~~~~~-~~~~~-~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~  478 (488)
                      +++++  +++|+|+++++. +..++ ..+..+|+++.+++. ..  +..||+++|++..+
T Consensus       377 k~~~~~~~~~ilG~~~~g~~~~~~~i~~~~~ai~~~~~~~~l~~~~~~~~Pt~~e~~~~~  436 (452)
T 2cdu_A          377 SLVYDPKTRVILGGALSSMHDVSQSANVLSVCIQNKNTIDDLAMVDMLFQPQFDRPFNYL  436 (452)
T ss_dssp             EEEECTTTCBEEEEEEEESSCCHHHHHHHHHHHHTTCBHHHHHHSCCCCCTTTCCSSCHH
T ss_pred             EEEEECCCCEEEEEEEEcCccHHHHHHHHHHHHHcCCCHHHHhhhhhccCCCCCchHHHH
Confidence            77774  599999998776 56554 455677888888763 32  47789998875544

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=100.00  E-value=2.3e-47  Score=388.25  Aligned_cols=399  Identities=21%  Similarity=0.259  Sum_probs=301.9

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      ++++|+|||||+||+++|..|++.+. +.+|+|||+++...|....++. ++... .....+           .....++
T Consensus         2 ~~~~VvIIGgG~aGl~aA~~L~~~~~-~~~V~vie~~~~~~~~~~~~p~-~~~~~-~~~~~~-----------~~~~~~~   67 (449)
T 3kd9_A            2 SLKKVVIIGGGAAGMSAASRVKRLKP-EWDVKVFEATEWVSHAPCGIPY-VVEGL-STPDKL-----------MYYPPEV   67 (449)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCT-TSEEEEECSSSCCC-------------------------------------CT
T ss_pred             CcCcEEEECCcHHHHHHHHHHHHhCc-CCCEEEEECCCccccCCcCCcc-ccCCC-CCHHHh-----------hhcCHHH
Confidence            35799999999999999999999853 4599999999987665433332 11111 111111           1223344


Q ss_pred             H-HHCCCeEEeCCcEEEEeCCCcEEEeCCC-cEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhh--
Q 011351          130 Y-KEKGIEMIYQDPVTSIDIEKQTLITNSG-KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE--  205 (488)
Q Consensus       130 ~-~~~~i~~~~~~~v~~id~~~~~v~~~~g-~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~--  205 (488)
                      + ++.+++++.+++|+.++++.+.+.+.++ .++.||+||||||+.+. .|+++|.+.+++++.++..+...+.+...  
T Consensus        68 ~~~~~gi~v~~~~~v~~i~~~~~~v~~~~g~~~~~~d~lviAtG~~p~-~p~i~G~~~~~v~~~~~~~~~~~~~~~~~~~  146 (449)
T 3kd9_A           68 FIKKRGIDLHLNAEVIEVDTGYVRVRENGGEKSYEWDYLVFANGASPQ-VPAIEGVNLKGVFTADLPPDALAIREYMEKY  146 (449)
T ss_dssp             HHHHTTCEEETTCEEEEECSSEEEEECSSSEEEEECSEEEECCCEEEC-CCSCBTTTSTTEECSCSTHHHHHHHHHHSSS
T ss_pred             HHHhcCcEEEecCEEEEEecCCCEEEECCceEEEEcCEEEECCCCCCC-CCCCCCCCCCCEEEeCCHHHHHHHHHHHHhc
Confidence            4 6889999999899999998888888877 47999999999999886 56677877788888888888877777665  


Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEE
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  285 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~  285 (488)
                      .+++++|||+|.+|+|+|..|.+.|.+|+++++.++++++.+++++.+.+.+.+++. |++++++.+++++.+  +.+..
T Consensus       147 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~-v~i~~~~~v~~i~~~--~~v~~  223 (449)
T 3kd9_A          147 KVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRRSFDKEVTDILEEKLKKH-VNLRLQEITMKIEGE--ERVEK  223 (449)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHTTT-SEEEESCCEEEEECS--SSCCE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhC-cEEEeCCeEEEEecc--CcEEE
Confidence            789999999999999999999999999999999999998768999999999999999 999999999999853  23333


Q ss_pred             EEeCCCcEEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHH
Q 011351          286 VKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHAR  364 (488)
Q Consensus       286 v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~  364 (488)
                      + +.+++++++|.||+|+|++|++++++.+|++.+ +|+|.||++++|+.|||||+|||+..+....|.......+..|.
T Consensus       224 v-~~~g~~i~~D~Vv~a~G~~p~~~l~~~~gl~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~l~~~A~  302 (449)
T 3kd9_A          224 V-VTDAGEYKAELVILATGIKPNIELAKQLGVRIGETGAIWTNEKMQTSVENVYAAGDVAETRHVITGRRVWVPLAPAGN  302 (449)
T ss_dssp             E-EETTEEEECSEEEECSCEEECCHHHHHTTCCBCTTSSBCCCTTCBCSSTTEEECSTTBCEEBTTTCSEECCCCHHHHH
T ss_pred             E-EeCCCEEECCEEEEeeCCccCHHHHHhCCccCCCCCCEEECCCCccCCCCEEEeeeeeeeccccCCceEEeccHHHHH
Confidence            3 457788999999999999999999999999876 57799999999999999999999987765555544456888999


Q ss_pred             HHHHHHHHHHhcCCCCCC-CCCCceeEeccccCCCCcceeeEEeeCCCC-------cEEE-----Ec------cCCCcEE
Q 011351          365 QSAQHCIKALLSAQTHTY-DYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETIE-----IG------NFDPKIA  425 (488)
Q Consensus       365 ~~g~~~a~~i~~~~~~~~-~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~-------~~~~-----~~------~~~~~~~  425 (488)
                      .||+.+|+||++... .+ ...|++|+.+++..       +..+|....       +...     .+      +....|.
T Consensus       303 ~~g~~aa~~i~g~~~-~~~~~~~~~~~~~~~~~-------~~~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  374 (449)
T 3kd9_A          303 KMGYVAGSNIAGKEL-HFPGVLGTAVTKFMDVE-------IGKTGLTEMEALKEGYDVRTAFIKASTRPHYYPGGREIWL  374 (449)
T ss_dssp             HHHHHHHHHHTTCCC-CCCCBCCCEEEEETTEE-------EEEEECCHHHHHHTTCCEEEEEEEEESSCTTSTTCCEEEE
T ss_pred             HHHHHHHHHhcCCCc-cCCCcccceEEEEcCcE-------EEEecCCHHHHHHCCCceEEEEEecCCccccCCCCceEEE
Confidence            999999999997543 44 34577788777654       566665432       1110     11      0113477


Q ss_pred             EEEEEC--CEEEEEEeecCChHHhhHH-HHHHhcCCCCC-hhh--hcCCCcHHHHH
Q 011351          426 TFWIDS--GKLKGVLVESGSPEEFQLL-PTLARSQPFVD-KAK--LQQASSVEEAL  475 (488)
Q Consensus       426 ~~~~~~--~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~--~~~~~~~~~~~  475 (488)
                      |+.++.  ++|+|+++++.++.++... ..+|+.+.+++ ...  +..+|+++++.
T Consensus       375 kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~p~~~~~~  430 (449)
T 3kd9_A          375 KGVVDNETNRLLGVQVVGSDILPRIDTAAAMLMAGFTTKDAFFTDLAYAPPFAPVW  430 (449)
T ss_dssp             EEEEETTTCBEEEEEEEESSCHHHHHHHHHHHHTTCBHHHHHTCCCCCBTTTBCSS
T ss_pred             EEEEECCCCEEEEEEEEChHHHHHHHHHHHHHHcCCcHHHHhhcccccCCCCCCch
Confidence            887764  9999999988887776644 55678888775 332  35567776544

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=100.00  E-value=2.1e-46  Score=373.46  Aligned_cols=369  Identities=21%  Similarity=0.272  Sum_probs=289.4

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCC-CCHh
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGER-QTPE  128 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  128 (488)
                      +++||+|||||+||++||..|++.|. +.+|+|+|+++...|.++.++..+..  ......+           .. ....
T Consensus         3 ~~~dvvIIG~G~aGl~aA~~l~~~g~-~~~V~lie~~~g~~~~~~~l~~~~~~--~~~~~~~-----------~~~~~~~   68 (384)
T 2v3a_A            3 ERAPLVIIGTGLAGYNLAREWRKLDG-ETPLLMITADDGRSYSKPMLSTGFSK--NKDADGL-----------AMAEPGA   68 (384)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHTTCS-SSCEEEECSSCCCEECGGGGGGTTTT--TCCHHHH-----------EEECHHH
T ss_pred             CCCcEEEECChHHHHHHHHHHHhhCC-CCCEEEEECCCCCccCcccccHHHhC--CCCHHHh-----------hccCHHH
Confidence            35899999999999999999999986 56899999998777777666542211  1111110           01 2345


Q ss_pred             HHHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCC
Q 011351          129 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAK  208 (488)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~  208 (488)
                      ++++.+++++.+++|+.++++.++|.+.+ .++.||+||+|||+.+. .|++++.+.+++++.+++.+...+...+..++
T Consensus        69 ~~~~~~v~~~~~~~v~~i~~~~~~v~~~~-~~~~~d~lviAtG~~p~-~p~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~  146 (384)
T 2v3a_A           69 MAEQLNARILTHTRVTGIDPGHQRIWIGE-EEVRYRDLVLAWGAEPI-RVPVEGDAQDALYPINDLEDYARFRQAAAGKR  146 (384)
T ss_dssp             HHHHTTCEEECSCCCCEEEGGGTEEEETT-EEEECSEEEECCCEEEC-CCCCBSTTTTCEEECSSHHHHHHHHHHHTTCC
T ss_pred             HHHhCCcEEEeCCEEEEEECCCCEEEECC-cEEECCEEEEeCCCCcC-CCCCCCcCcCCEEEECCHHHHHHHHHhhccCC
Confidence            66788999998888999999888898865 46999999999999886 45667765678899999998888877777899


Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL  288 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l  288 (488)
                      +++|||+|.+|+|+|..|.+.|.+|+++++.++++++.+++.+.+.+.+.+++.||++++++++++++.++ +. ..+.+
T Consensus       147 ~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~-~~-~~v~~  224 (384)
T 2v3a_A          147 RVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKAG-EG-LEAHL  224 (384)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHTTTCEEEESCCEEEEEEET-TE-EEEEE
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhhcccCHHHHHHHHHHHHHcCCEEEeCCEEEEEEecC-CE-EEEEE
Confidence            99999999999999999999999999999999999876799999999999999999999999999998643 33 36788


Q ss_pred             CCCcEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHH
Q 011351          289 EDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQ  368 (488)
Q Consensus       289 ~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~  368 (488)
                      ++|+++++|.||+|+|.+|++++++++|+..++| |.||++++|+.|+|||+|||+..+...      ..++..|..||+
T Consensus       225 ~~g~~i~~d~vv~a~G~~p~~~l~~~~g~~~~~g-i~vd~~~~t~~~~IyA~GD~~~~~~~~------~~~~~~a~~~g~  297 (384)
T 2v3a_A          225 SDGEVIPCDLVVSAVGLRPRTELAFAAGLAVNRG-IVVDRSLRTSHANIYALGDCAEVDGLN------LLYVMPLMACAR  297 (384)
T ss_dssp             TTSCEEEESEEEECSCEEECCHHHHHTTCCBSSS-EEECTTCBCSSTTEEECGGGEEETTBC------CCSHHHHHHHHH
T ss_pred             CCCCEEECCEEEECcCCCcCHHHHHHCCCCCCCC-EEECCCCCCCCCCEEEeeeeeeECCCC------cchHHHHHHHHH
Confidence            8999999999999999999998999999988765 999999999999999999999754321      236778999999


Q ss_pred             HHHHHHhcCCCCCCC--CCCceeEeccccCCCCcceeeEEeeCCCC---cEEEEccCCCcEEEEEEE-CCEEEEEEeecC
Q 011351          369 HCIKALLSAQTHTYD--YLPYFYSRVFEYEGSPRKVWWQFFGDNVG---ETIEIGNFDPKIATFWID-SGKLKGVLVESG  442 (488)
Q Consensus       369 ~~a~~i~~~~~~~~~--~~p~~~~~~~~~~g~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~  442 (488)
                      .+|+||++.. .++.  .+|+++   |.. +    ..++..|....   .....++ ...+.+++++ +|+|+|+++++.
T Consensus       298 ~~a~~i~g~~-~~~~~~~~p~~~---~~~-~----~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~~i~G~~~~g~  367 (384)
T 2v3a_A          298 ALAQTLAGNP-SQVAYGPMPVTV---KTP-A----CPLVVSPPPRGMDGQWLVEGS-GTDLKVLCRDTAGRVIGYALTGA  367 (384)
T ss_dssp             HHHHHHTTCC-CCCCCCCCCEEE---CCT-T----SCEEEECCCTTCCCEEEEEEE-TTEEEEEEECTTSCEEEEEEEGG
T ss_pred             HHHHHhcCCC-ccCCCCCcceEE---EEC-C----eeEEEecCCCCCCceEEEEec-CCcEEEEEEccCCEEEEEEEECc
Confidence            9999999743 4444  466532   111 1    12555665422   2222333 3457788775 799999998777


Q ss_pred             ChHHhhHHHHH
Q 011351          443 SPEEFQLLPTL  453 (488)
Q Consensus       443 ~~~~~~~~~~~  453 (488)
                      .+.++..+.+.
T Consensus       368 ~a~e~~~~~~~  378 (384)
T 2v3a_A          368 AVNEKLALNKE  378 (384)
T ss_dssp             GGGGHHHHHTT
T ss_pred             chHHHHHHHHh
Confidence            77776555443

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=100.00  E-value=1.2e-46  Score=385.76  Aligned_cols=403  Identities=20%  Similarity=0.309  Sum_probs=306.3

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (488)
                      ++||+|||||+||++||..|++.+. ..+|+|||+++..+|.++.++. ++.........+           .....+++
T Consensus        36 ~~dvvIIG~G~aGl~aA~~l~~~~~-g~~V~lie~~~~~~~~~~~~~~-~~~~~~~~~~~l-----------~~~~~~~~  102 (480)
T 3cgb_A           36 SMNYVIIGGDAAGMSAAMQIVRNDE-NANVVTLEKGEIYSYAQCGLPY-VISGAIASTEKL-----------IARNVKTF  102 (480)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHCT-TCEEEEECSSSCCSBCGGGHHH-HHTTSSSCGGGG-----------BSSCHHHH
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCc-CCcEEEEECCCCCCCCCCCcch-hhcCCcCCHHHh-----------hhcCHHHH
Confidence            4699999999999999999999742 3489999999887776544332 111110111111           12345566


Q ss_pred             -HHCCCeEEeCCcEEEEeCCCcEEEeCC---Cc--EEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhh
Q 011351          131 -KEKGIEMIYQDPVTSIDIEKQTLITNS---GK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL  204 (488)
Q Consensus       131 -~~~~i~~~~~~~v~~id~~~~~v~~~~---g~--~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~  204 (488)
                       +..+++++.+++|+.++.+.+.+.+.+   |+  ++.||+||+|||+.+. .|+++|.+.++++++++..+...+.+.+
T Consensus       103 ~~~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~-~p~i~G~~~~~v~~~~~~~~~~~l~~~~  181 (480)
T 3cgb_A          103 RDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPV-MPEWEGRDLQGVHLLKTIPDAERILKTL  181 (480)
T ss_dssp             HHTTCCEEESSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEEC-CCCCBTTTSBTEECCSSHHHHHHHHHHH
T ss_pred             HhhcCCEEEeCCEEEEEECCCCEEEEEEcCCCceEEEEcCEEEECCCCccc-CCCCCCccCCCEEEeCCHHHHHHHHHHh
Confidence             445999999889999999888887753   66  7999999999999886 4566776667888888888887777666


Q ss_pred             h--cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCc
Q 011351          205 E--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR  282 (488)
Q Consensus       205 ~--~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~  282 (488)
                      .  .+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++ .+++++.+.+.+.+++.||++++++++++++.+  +.
T Consensus       182 ~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~--~~  258 (480)
T 3cgb_A          182 ETNKVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGT-IYDGDMAEYIYKEADKHHIEILTNENVKAFKGN--ER  258 (480)
T ss_dssp             HSSCCCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTS-SSCHHHHHHHHHHHHHTTCEEECSCCEEEEEES--SB
T ss_pred             hhcCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhh-cCCHHHHHHHHHHHHHcCcEEEcCCEEEEEEcC--Cc
Confidence            5  789999999999999999999999999999999999887 479999999999999999999999999999853  44


Q ss_pred             EEEEEeCCCcEEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHH
Q 011351          283 VAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVD  361 (488)
Q Consensus       283 v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~  361 (488)
                      +..+.++ +.++++|.||+|+|++|+.++++.+|+..+ +|+|.||++++|+.|+|||+|||+..+....|....+.++.
T Consensus       259 v~~v~~~-~~~i~~D~vi~a~G~~p~~~~l~~~g~~~~~~G~I~Vd~~~~ts~p~IyA~GD~~~~~~~~~g~~~~~~~~~  337 (480)
T 3cgb_A          259 VEAVETD-KGTYKADLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYMQTNVQDVYAAGDCATHYHVIKEIHDHIPIGT  337 (480)
T ss_dssp             EEEEEET-TEEEECSEEEECSCEEESCGGGTTSCCCBCTTSCBCCCTTSBCSSTTEEECGGGBCEEBTTTCSEECCCCHH
T ss_pred             EEEEEEC-CCEEEcCEEEECcCCCcChHHHHhCCcccCCCCCEEECCCccCCCCCEEEeeeEEEecCCCCCcceecchHH
Confidence            5456665 457999999999999999999999998875 67899999999999999999999987665445443445788


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCC-CCCceeEeccccCCCCcceeeEEeeCCCC-------c--E-EEEccC--------CC
Q 011351          362 HARQSAQHCIKALLSAQTHTYD-YLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------E--T-IEIGNF--------DP  422 (488)
Q Consensus       362 ~A~~~g~~~a~~i~~~~~~~~~-~~p~~~~~~~~~~g~~~~~~~~~~g~~~~-------~--~-~~~~~~--------~~  422 (488)
                      .|..||+.+|.+|++.. .++. ..+++|+.+++..       +..+|....       +  . ......        ..
T Consensus       338 ~A~~qg~~aa~~i~g~~-~~~~~~~~~~~~~~~~~~-------~~~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~  409 (480)
T 3cgb_A          338 TANKQGRLAGLNMLDKR-RAFKGTLGTGIIKFMNLT-------LARTGLNEKEAKGLHIPYKTVKVDSTNMAGYYPNAKP  409 (480)
T ss_dssp             HHHHHHHHHHHHHTTCC-CCCCCBCCCEEEEETTEE-------EEEEECCHHHHHHTTCCEEEEEEEEESSCTTSTTCCE
T ss_pred             HHHHHHHHHHHHhcCCC-ccCCCccceeEEEECCcE-------EEEeCCCHHHHHHcCCceEEEEEecCCcccccCCCce
Confidence            99999999999999743 3443 3456677777643       556665422       1  1 111110        12


Q ss_pred             cEEEEEEE--CCEEEEEEeecCC-hHH-hhHHHHHHhcCCCCCh-hh--hcCCCcHHHHHHHHH
Q 011351          423 KIATFWID--SGKLKGVLVESGS-PEE-FQLLPTLARSQPFVDK-AK--LQQASSVEEALEIAR  479 (488)
Q Consensus       423 ~~~~~~~~--~~~~~g~~~~~~~-~~~-~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~  479 (488)
                      .+.+++++  +|+|+|+++++.. +.+ +..+..+|+++.+++. ..  +..||+++|++..+.
T Consensus       410 ~~~kl~~~~~~~~ilG~~~vg~~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~~Pt~~e~~~~~~  473 (480)
T 3cgb_A          410 LYLKLLYRSDTKQLLGGQVIGEEGVDKRIDVIAMALFNKMSIHDLEDVDLSYAPPYNSVWDPIQ  473 (480)
T ss_dssp             EEEEEEEETTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBGGGGGGCCCCCCTTTCCSSCHHH
T ss_pred             EEEEEEEECCCCEEEEEEEECCccHHHHHHHHHHHHHcCCCHHHHhhcccccCCCCCCchhHHH
Confidence            36777774  6999999987776 555 4456777899988863 33  357899998765543

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=100.00  E-value=3.4e-47  Score=386.74  Aligned_cols=402  Identities=19%  Similarity=0.257  Sum_probs=305.6

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHH
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYK  131 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (488)
                      +||||||||+||++||..|++.+. +.+|+|||+++..+|....+.. ++.........+           .....++++
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~-g~~V~lie~~~~~~~~~~~~~~-~~~~~~~~~~~~-----------~~~~~~~~~   67 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHP-DAEIQWYEKGDFISFLSAGMQL-YLEGKVKDVNSV-----------RYMTGEKME   67 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCT-TSEEEEEESSSSSSBCGGGHHH-HHTTSSCCGGGS-----------BSCCHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCc-CCeEEEEECCCccCcccccchh-hhcCccCCHHHh-----------hcCCHHHHH
Confidence            489999999999999999999842 3489999999876664332211 111110011111           234567888


Q ss_pred             HCCCeEEeCCcEEEEeCCCcEEEeCC---Cc--EEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhh-
Q 011351          132 EKGIEMIYQDPVTSIDIEKQTLITNS---GK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE-  205 (488)
Q Consensus       132 ~~~i~~~~~~~v~~id~~~~~v~~~~---g~--~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~-  205 (488)
                      +.+++++.+++|+.++++.++|.+.+   |+  ++.||+||||||+.+. .|+++|.+.++++++++..+...+.+.+. 
T Consensus        68 ~~gv~~~~~~~v~~i~~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~-~p~i~G~~~~~v~~~~~~~~~~~l~~~~~~  146 (447)
T 1nhp_A           68 SRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPF-ELDIPGKDLDNIYLMRGRQWAIKLKQKTVD  146 (447)
T ss_dssp             HTTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEEC-CCCSTTTTSBSEECCCHHHHHHHHHHHHTC
T ss_pred             HCCCEEEECCEEEEEeCCCCEEEEEecCCCceEEEeCCEEEEcCCCCcC-CCCCCCCCCCCeEEECCHHHHHHHHHHhhh
Confidence            89999988999999999888888754   65  4899999999999886 45677766678888888888877777666 


Q ss_pred             -cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEE
Q 011351          206 -KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA  284 (488)
Q Consensus       206 -~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~  284 (488)
                       .+++++|||+|++|+|+|..|.+.|.+|+++++.++++++.+++++.+.+.+.+++.||+++++++|++++.+  +.+.
T Consensus       147 ~~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~--~~v~  224 (447)
T 1nhp_A          147 PEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGD--GRVQ  224 (447)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEESCCEEEEECS--SBCC
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcccccccCCHHHHHHHHHHHHhCCCEEEcCCEEEEEEcc--CcEE
Confidence             7899999999999999999999999999999999999886789999999999999999999999999999853  4443


Q ss_pred             EEEeCCCcEEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHH
Q 011351          285 AVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHA  363 (488)
Q Consensus       285 ~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A  363 (488)
                      .+.+ +++++++|.||+|+|.+|+.++++.. ++.+ +|+|.||++++|+.|+|||+|||+..+....+......++..|
T Consensus       225 ~v~~-~~~~i~~d~vi~a~G~~p~~~~~~~~-~~~~~~G~i~Vd~~~~t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A  302 (447)
T 1nhp_A          225 KVVT-DKNAYDADLVVVAVGVRPNTAWLKGT-LELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNA  302 (447)
T ss_dssp             EEEE-SSCEEECSEEEECSCEEESCGGGTTT-SCBCTTSCBCCCTTCBCSSTTEEECGGGSCEEEGGGTEEECCCCHHHH
T ss_pred             EEEE-CCCEEECCEEEECcCCCCChHHHHhh-hhhcCCCcEEECccccCCCCCEEEeeeEEEeeccCCCCceechhHHHH
Confidence            4555 56789999999999999999988877 7664 5779999999999999999999998765444544445688899


Q ss_pred             HHHHHHHHHHHhcCCCCCCC-CCCceeEeccccCCCCcceeeEEeeCCCCc-------EE---E--Ecc------CCCcE
Q 011351          364 RQSAQHCIKALLSAQTHTYD-YLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TI---E--IGN------FDPKI  424 (488)
Q Consensus       364 ~~~g~~~a~~i~~~~~~~~~-~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~-------~~---~--~~~------~~~~~  424 (488)
                      ..||+.+|.||++.. .++. ..+++|+.+++..       +..+|....+       ..   .  ...      ....+
T Consensus       303 ~~qg~~aa~~i~g~~-~~~~~~~~~~~~~~~~~~-------~~~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~  374 (447)
T 1nhp_A          303 RKQGRFAVKNLEEPV-KPFPGVQGSSGLAVFDYK-------FASTGINEVMAQKLGKETKAVTVVEDYLMDFNPDKQKAW  374 (447)
T ss_dssp             HHHHHHHHHTSSSCC-CCCCCBCCCEEEEETTEE-------EEEEECCHHHHHHHTCCCEEEEEEEESSCTTCTTCCEEE
T ss_pred             HHHHHHHHHhhcCCC-CCCCCccccEEEEECCee-------eEEecCCHHHHHHcCCceEEEEEEcCCccccCCCCceEE
Confidence            999999999999743 3333 4577888777643       5556644210       10   1  110      11236


Q ss_pred             EEEEEE--CCEEEEEEeecCC-hHHh-hHHHHHHhcCCCCCh-hh--hcCCCcHHHHHHHHH
Q 011351          425 ATFWID--SGKLKGVLVESGS-PEEF-QLLPTLARSQPFVDK-AK--LQQASSVEEALEIAR  479 (488)
Q Consensus       425 ~~~~~~--~~~~~g~~~~~~~-~~~~-~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~  479 (488)
                      .+++++  +++|+|+++++.. +.++ ..+..+|+++.+++. ..  +..|||++|++..+.
T Consensus       375 ~k~~~~~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~~Pt~~e~~~~~~  436 (447)
T 1nhp_A          375 FKLVYDPETTQILGAQLMSKADLTANINAISLAIQAKMTIEDLAYADFFFQPAFDKPWNIIN  436 (447)
T ss_dssp             EEEEECTTTCBEEEEEEEESSCCTTHHHHHHHHHHTTCBHHHHHTCCCCCCTTTCCSSCHHH
T ss_pred             EEEEEECCCCEEEEEEEEcCccHHHHHHHHHHHHHcCCCHHHHhhcceecCCCCCCcccHHH
Confidence            777775  5999999987776 5554 456677899988873 32  467899988765553

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=100.00  E-value=4.7e-46  Score=389.89  Aligned_cols=386  Identities=19%  Similarity=0.335  Sum_probs=300.3

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHH
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYK  131 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (488)
                      ++|+|||||+||++||.+|++.+. +.+|+|||+++..+|.++.++. ++..........           .....+++.
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~-~~~V~lie~~~~~~~~~~~l~~-~~~~~~~~~~~~-----------~~~~~~~~~   68 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSE-TAEIIMFERGEYVSFANCGLPY-HISGEIAQRSAL-----------VLQTPESFK   68 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCS-SSEEEEECSSSCSSBCGGGHHH-HHTSSSCCGGGG-----------BCCCHHHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCc-CCCEEEEECCCCccccccCchH-HhcCCcCChHHh-----------hccCHHHHH
Confidence            689999999999999999999854 5599999999998887655542 221111111100           123445554


Q ss_pred             -HCCCeEEeCCcEEEEeCCCcEEEeCC---Cc--EEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhh-
Q 011351          132 -EKGIEMIYQDPVTSIDIEKQTLITNS---GK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL-  204 (488)
Q Consensus       132 -~~~i~~~~~~~v~~id~~~~~v~~~~---g~--~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~-  204 (488)
                       +.+++++++++|++++++.+.+++.+   |+  ++.||+||||||+.+. .|+++|.+.++++++++..+.+.+.+.+ 
T Consensus        69 ~~~~i~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~-~p~ipG~~~~~v~~~~~~~~~~~l~~~~~  147 (565)
T 3ntd_A           69 ARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPI-VPPIPGVDNPLTHSLRNIPDMDRILQTIQ  147 (565)
T ss_dssp             HHHCCEEETTEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEEC-CCCCTTCCSTTEECCSSHHHHHHHHHHHH
T ss_pred             HhcCcEEEECCEEEEEECCCCEEEEEecCCCCeEEEECCEEEECCCCCCC-CCCCCCCCCCCEEEeCCHHHHHHHHHHHh
Confidence             58999999999999999998887753   44  6899999999999886 4667787778888888888887776544 


Q ss_pred             -hcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeC-----
Q 011351          205 -EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG-----  278 (488)
Q Consensus       205 -~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~-----  278 (488)
                       ..+++++|||+|.+|+|+|..|.+.|.+|+++++.+++++ .+++++.+.+.+.+++.||++++++.+++++.+     
T Consensus       148 ~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~  226 (565)
T 3ntd_A          148 MNNVEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMT-PVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHV  226 (565)
T ss_dssp             HTTCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSCT-TSCHHHHHHHHHHHHHTTCEEEETCCEEEEEEECCCCC
T ss_pred             hCCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccch-hcCHHHHHHHHHHHHHCCCEEEeCCeEEEEeccccccc
Confidence             3568999999999999999999999999999999999998 589999999999999999999999999999862     


Q ss_pred             -------------CCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCCCCCCCCCCEEEEceec
Q 011351          279 -------------SDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVA  344 (488)
Q Consensus       279 -------------~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a  344 (488)
                                   +++.+ .+.+.+|+++++|.||+|+|++|++++++.+|+..+ +|+|.||++++|+.|||||+|||+
T Consensus       227 ~~~~~~~~~~~~~~~~~~-~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~g~~~~~~g~i~vd~~~~t~~~~IyA~GD~~  305 (565)
T 3ntd_A          227 ASDAAGEDTAHQHIKGHL-SLTLSNGELLETDLLIMAIGVRPETQLARDAGLAIGELGGIKVNAMMQTSDPAIYAVGDAV  305 (565)
T ss_dssp             CCGGGTCCCTTCCTTCEE-EEEETTSCEEEESEEEECSCEEECCHHHHHHTCCBCTTSSBCCCTTCBCSSTTEEECGGGB
T ss_pred             cccccccccccccCCCcE-EEEEcCCCEEEcCEEEECcCCccchHHHHhCCcccCCCCCEEECCCcccCCCCEEEeeeeE
Confidence                         23443 567789999999999999999999999998898875 688999999999999999999999


Q ss_pred             ccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCCC-CceeEeccccCCCCcceeeEEeeCCCCc---------E
Q 011351          345 AFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYL-PYFYSRVFEYEGSPRKVWWQFFGDNVGE---------T  414 (488)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~~~~~~-p~~~~~~~~~~g~~~~~~~~~~g~~~~~---------~  414 (488)
                      ..+....|......++..|..||+.+|+||++.. ..+... |++|+.+|+..       +..+|....+         .
T Consensus       306 ~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~-~~~~~~~~~~~~~~~~~~-------~~~vG~~e~~a~~~g~~~~~  377 (565)
T 3ntd_A          306 EEQDFVTGQACLVPLAGPANRQGRMAADNMFGRE-ERYQGTQGTAICKVFDLA-------VGATGKNEKQLKQAGIAFEK  377 (565)
T ss_dssp             CEEBTTTCCEECCCCHHHHHHHHHHHHHHHTTCC-CCCCCBCCCEEEEETTEE-------EEEEECCHHHHHHTTCCCEE
T ss_pred             eeccccCCceeecccHHHHHHHHHHHHHHhcCCC-ccCCCcccceEEEEcCcE-------EEEecCCHHHHHHcCCCeEE
Confidence            8777666665556688899999999999999754 345544 45556677543       5566654321         1


Q ss_pred             EEEcc-----C----CCcEEEEEE--ECCEEEEEEeecCCh-HH-hhHHHHHHhcCCCCC
Q 011351          415 IEIGN-----F----DPKIATFWI--DSGKLKGVLVESGSP-EE-FQLLPTLARSQPFVD  461 (488)
Q Consensus       415 ~~~~~-----~----~~~~~~~~~--~~~~~~g~~~~~~~~-~~-~~~~~~~~~~~~~~~  461 (488)
                      .....     .    ...+.|+.+  ++++|+|+++++.++ .+ +..+..+|+.+.+++
T Consensus       378 ~~~~~~~~~~~~~~~~~~~~k~v~~~~~~~ilG~~~~g~~a~~e~i~~~~~ai~~~~~~~  437 (565)
T 3ntd_A          378 VYVHTASHASYYPGAEVVSFKLLFDPVKGTIFGAQAVGKDGIDKRIDVMAVAQRAGMTVE  437 (565)
T ss_dssp             EEEEEESSCTTSTTCCEEEEEEEECTTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBHH
T ss_pred             EEEecCcccCcCCCCceEEEEEEEECCCCEEEEEEEECCccHHHHHHHHHHHHHcCCCHH
Confidence            11110     1    124678887  469999999988776 55 445555678887765

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=100.00  E-value=1e-44  Score=380.98  Aligned_cols=408  Identities=19%  Similarity=0.293  Sum_probs=297.8

Q ss_pred             cCCCCcccceeccccccccccccccccccccCCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCC
Q 011351           17 WCPQSPSLHRIRHSSAKNFQRRGFVVAYSSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPAL   96 (488)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l   96 (488)
                      +..+||.++++....+..            ..+++++|+|||||+||++||.+|++.+. +.+|+|||+++..+|.++.+
T Consensus        14 ~~~~np~~g~e~~~~~~~------------~~~~~~~VvIIGgG~AGl~aA~~L~~~~~-g~~V~vie~~~~~~~~~~~l   80 (588)
T 3ics_A           14 SMTGGQQMGRTLYDDDDK------------DRWGSRKIVVVGGVAGGASVAARLRRLSE-EDEIIMVERGEYISFANCGL   80 (588)
T ss_dssp             --------------------------------CCCCEEEEECCSHHHHHHHHHHHHHCS-SSEEEEECSSSCSSBCGGGH
T ss_pred             ccccchhcCccccCcccC------------CcccCCCEEEECCcHHHHHHHHHHHhhCc-CCCEEEEECCCCccccCCCC
Confidence            558888888886322111            13456899999999999999999999843 45999999999988876554


Q ss_pred             CccccCCCCCCCCCCCCcccccCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeC---CCc--EEEeccEEeccC
Q 011351           97 TKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITN---SGK--LLKYGSLIVATG  171 (488)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~---~g~--~i~yd~lVlAtG  171 (488)
                      +. ++.........+          .......+.++.+++++++++|+.++++.+.+.+.   +|+  .+.||+||||||
T Consensus        81 p~-~~~g~~~~~~~~----------~~~~~~~~~~~~gi~v~~~~~V~~id~~~~~v~v~~~~~g~~~~~~~d~lviAtG  149 (588)
T 3ics_A           81 PY-YIGGVITERQKL----------LVQTVERMSKRFNLDIRVLSEVVKINKEEKTITIKNVTTNETYNEAYDVLILSPG  149 (588)
T ss_dssp             HH-HHTTSSCCGGGG----------BSSCHHHHHHHTTCEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCC
T ss_pred             ch-hhcCcCCChHHh----------hccCHHHHHHhcCcEEEECCEEEEEECCCCEEEEeecCCCCEEEEeCCEEEECCC
Confidence            42 111111111000          01233445568899999999999999999888774   455  689999999999


Q ss_pred             CCCCcCCCCCCC-CCCcEEEecCHHHHHHHHHhh--hcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccC
Q 011351          172 CTASRFPEKIGG-YLPGVHYIRDVADADALISSL--EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFT  248 (488)
Q Consensus       172 ~~~~~~~~~~g~-~~~gv~~~~~~~~~~~~~~~~--~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~  248 (488)
                      +.+. .|.++|. +.+++++.++..+...+...+  ..+++++|||+|.+|+|+|..|.+.|.+|+++++.+++++. ++
T Consensus       150 ~~p~-~p~i~G~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~  227 (588)
T 3ics_A          150 AKPI-VPSIPGIEEAKALFTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPP-ID  227 (588)
T ss_dssp             EEEC-CCCCTTTTTCTTEEECSSHHHHHHHHHHHHHHCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SC
T ss_pred             CCCC-CCCCCCcccCCCeEEeCCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccccc-CC
Confidence            9876 4566776 677889999888887776654  36899999999999999999999999999999999999986 89


Q ss_pred             HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeC
Q 011351          249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVD  327 (488)
Q Consensus       249 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd  327 (488)
                      +++.+.+.+.+++.||++++++.|++++.. ++   .+.+.+|+++++|.||+|+|++|++++++.+|+..+ +|+|.||
T Consensus       228 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~---~v~~~~g~~i~~D~Vi~a~G~~p~~~~l~~~g~~~~~~g~i~vd  303 (588)
T 3ics_A          228 YEMAAYVHEHMKNHDVELVFEDGVDALEEN-GA---VVRLKSGSVIQTDMLILAIGVQPESSLAKGAGLALGVRGTIKVN  303 (588)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEGG-GT---EEEETTSCEEECSEEEECSCEEECCHHHHHTTCCBCGGGCBCCC
T ss_pred             HHHHHHHHHHHHHcCCEEEECCeEEEEecC-CC---EEEECCCCEEEcCEEEEccCCCCChHHHHhcCceEcCCCCEEEC
Confidence            999999999999999999999999999853 22   477889999999999999999999999999999875 6889999


Q ss_pred             CCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCC-CCCCceeEeccccCCCCcceeeEE
Q 011351          328 GQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTY-DYLPYFYSRVFEYEGSPRKVWWQF  406 (488)
Q Consensus       328 ~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~~~-~~~p~~~~~~~~~~g~~~~~~~~~  406 (488)
                      ++++|+.|+|||+|||+..+....|.......+..|..||+.+|++|++.....+ ..+|..+...++..       +..
T Consensus       304 ~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~-------~a~  376 (588)
T 3ics_A          304 EKFQTSDPHIYAIGDAIEVKDFVTETETMIPLAWPANRQGRMLADIIHGHTDSLYKGTLGTSVAKVFDLT-------VAT  376 (588)
T ss_dssp             TTSBCSSTTEEECGGGBCEEBTTTCCEECCCCHHHHHHHHHHHHHHHTTCCSSCCCCBCCCEEEEETTEE-------EEE
T ss_pred             CccccCCCCEEEeeeeeecccccCCcccccccHHHHHHHHHHHHHHhcCCCccccCCcccceEEEECCeE-------EEE
Confidence            9999999999999999987765555544456788899999999999997222334 34555554444432       445


Q ss_pred             eeCCCCc---------EEE---Ecc--C----CCcEEEEEEE--CCEEEEEEeecCC-hHHhh-HHHHHHhcCCCCC
Q 011351          407 FGDNVGE---------TIE---IGN--F----DPKIATFWID--SGKLKGVLVESGS-PEEFQ-LLPTLARSQPFVD  461 (488)
Q Consensus       407 ~g~~~~~---------~~~---~~~--~----~~~~~~~~~~--~~~~~g~~~~~~~-~~~~~-~~~~~~~~~~~~~  461 (488)
                      +|....+         ...   ...  .    ...+.|+.++  +++|+|+++++.+ +.++. .+..+|+.+.+++
T Consensus       377 vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~~~~~~ilG~~~~g~~~~~e~i~~~~~ai~~~~t~~  453 (588)
T 3ics_A          377 TGLNEKILKRLNIPYEVVHVQANSHAGYYPNATPVLIKLIFNKDSGKIYGAQTLGRDGVDKRMDVIATAIKANLTVL  453 (588)
T ss_dssp             EECCHHHHHHTTCCCEEEEEEEESSCTTSTTCCEEEEEEEECTTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBTT
T ss_pred             ecCCHHHHHHcCCCeEEEEEecCCccccCCCCceEEEEEEEECCCCeEEEEEEEcCCcHHHHHHHHHHHHHcCCCHH
Confidence            5543210         111   110  0    1247788774  6999999987654 55544 5555678888876

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=100.00  E-value=2.4e-42  Score=357.12  Aligned_cols=403  Identities=20%  Similarity=0.257  Sum_probs=287.2

Q ss_pred             CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC----CCCCCccccC--------------C-CCCCC
Q 011351           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE----RPALTKGYLF--------------P-LDKKP  108 (488)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~----~~~l~~~~~~--------------~-~~~~~  108 (488)
                      ++.++||+|||||+||++||.+|++.|.   +|+|||+++.....    .+..++.++.              . .....
T Consensus        40 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~---~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~  116 (523)
T 1mo9_A           40 DPREYDAIFIGGGAAGRFGSAYLRAMGG---RQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMT  116 (523)
T ss_dssp             CCSCBSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCT
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHCCC---CEEEEeCCCCCCCcccccCcCchHHHHHHHHHHHHHhhhhhcCcHHHHH
Confidence            3456899999999999999999999987   89999998742110    0000000000              0 00000


Q ss_pred             CCCCCcccccCCCCCCCCH---hHH-----HHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCC
Q 011351          109 ARLPGFHTCVGSGGERQTP---EWY-----KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEK  180 (488)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~---~~~-----~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~  180 (488)
                      ...+...... ........   .++     ++.++++++..++..++.  +++.+. ++.+.||+||+|||+.+. .|++
T Consensus       117 ~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~--~~v~~~-g~~~~~d~lViATGs~p~-~p~i  191 (523)
T 1mo9_A          117 EKVVGIKEVV-DLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDN--HTVEAA-GKVFKAKNLILAVGAGPG-TLDV  191 (523)
T ss_dssp             TCCCCHHHHH-HHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEET--TEEEET-TEEEEBSCEEECCCEECC-CCCS
T ss_pred             hhhhhHHHHH-HHHHhhhhhhhhhhhhcccccCCcEEEEeeEEEEeeC--CEEEEC-CEEEEeCEEEECCCCCCC-CCCC
Confidence            0000000000 00000012   455     678999985568888885  567776 778999999999999886 4556


Q ss_pred             CCCCCCcEEEecCHHHHHHHH-HhhhcC-CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHH
Q 011351          181 IGGYLPGVHYIRDVADADALI-SSLEKA-KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQL  258 (488)
Q Consensus       181 ~g~~~~gv~~~~~~~~~~~~~-~~~~~~-~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~  258 (488)
                      +|.+.+++++.      +.+. ...... ++++|||+|.+|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.
T Consensus       192 ~G~~~~~v~~~------~~~~~~l~~~~g~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~-~~~~~~~~l~~~  264 (523)
T 1mo9_A          192 PGVNAKGVFDH------ATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLI-KDNETRAYVLDR  264 (523)
T ss_dssp             TTTTSBTEEEH------HHHHHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTC-CSHHHHHHHHHH
T ss_pred             CCcccCcEeeH------HHHHHHHHhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccccc-ccHHHHHHHHHH
Confidence            66555555542      2333 222334 99999999999999999999999999999999999985 799999999999


Q ss_pred             HHHcCcEEEcCCeEEEEEeCCCCcE--EEEEeCCCc-EEEcCEEEEeecCccCCh-hhhhcCCccc-CCCEEeCCCCCCC
Q 011351          259 YQQNGVKFVKGASIKNLEAGSDGRV--AAVKLEDGS-TIDADTIVIGIGAKPTVS-PFERVGLNSS-VGGIQVDGQFRTR  333 (488)
Q Consensus       259 l~~~GV~v~~~~~v~~i~~~~~~~v--~~v~l~~g~-~i~~D~vi~a~G~~p~~~-~~~~~gl~~~-~g~i~vd~~~~t~  333 (488)
                      +++.||+++++++|++++..+++++  ..|.+++|+ ++++|.||+|+|++|+++ +++++|+..+ +|+|.||+++||+
T Consensus       265 l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~~~~l~~~gl~~~~~G~i~Vd~~~~t~  344 (523)
T 1mo9_A          265 MKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSAELAKILGLDLGPKGEVLVNEYLQTS  344 (523)
T ss_dssp             HHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEECCHHHHHHHTCCBCTTSCBCCCTTSBCS
T ss_pred             HHhCCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCccCCccCHHHcCCccCCCCCEEECCCCccC
Confidence            9999999999999999986545543  357788887 899999999999999998 7999999875 6779999999999


Q ss_pred             CCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC-CCCCCCceeEeccccCCCCcceeeEEeeCCCC
Q 011351          334 MPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH-TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG  412 (488)
Q Consensus       334 ~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~-~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~  412 (488)
                      .|+|||+|||+..+.          .+..|..||+.+|.||++.... .+..+|+++.....         +..+|....
T Consensus       345 ~~~IyA~GD~~~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~---------~a~vG~~e~  405 (523)
T 1mo9_A          345 VPNVYAVGDLIGGPM----------EMFKARKSGCYAARNVMGEKISYTPKNYPDFLHTHYE---------VSFLGMGEE  405 (523)
T ss_dssp             STTEEECGGGGCSSC----------SHHHHHHHHHHHHHHHTTCCCCCCCCSCCEEEESSSE---------EEEEECCHH
T ss_pred             CCCEEEEeecCCCcc----------cHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEECCCc---------eEEEeCCHH
Confidence            999999999997542          4556999999999999974322 25567875432111         334443321


Q ss_pred             -------cEEE----Ec------------------------cCCCcEEEEEEE--CCEEEEEEeecCChHHh-hHHHHHH
Q 011351          413 -------ETIE----IG------------------------NFDPKIATFWID--SGKLKGVLVESGSPEEF-QLLPTLA  454 (488)
Q Consensus       413 -------~~~~----~~------------------------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~-~~~~~~~  454 (488)
                             ++..    ..                        .....+.|++++  +++|+|+++++..+.++ ..+..+|
T Consensus       406 ~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai  485 (523)
T 1mo9_A          406 EARAAGHEIVTIKMPPDTENGLNVALPASDRTMLYAFGKGTAHMSGFQKIVIDAKTRKVLGAHHVGYGAKDAFQYLNVLI  485 (523)
T ss_dssp             HHHHTTCCEEEEEESCCSTTTTCSSCSCCTTTHHHHHSTTTGGGGCEEEEEEETTTCBEEEEEEEESSCHHHHHHHHHHH
T ss_pred             HHHhCCCCEEEEEEecccccccccccccccccccceEEeecCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHH
Confidence                   1111    00                        111357888875  69999999877776654 5566678


Q ss_pred             hcCCCCC-h-hh--hcCCCcHHHHHHHHHccCCc
Q 011351          455 RSQPFVD-K-AK--LQQASSVEEALEIARAALPV  484 (488)
Q Consensus       455 ~~~~~~~-~-~~--~~~~~~~~~~~~~~~~~~~~  484 (488)
                      +++.+++ . ..  ++.|||++|++..+++.+-+
T Consensus       486 ~~~~t~~~l~~~~~~~~~Pt~~e~~~~~~~~~~~  519 (523)
T 1mo9_A          486 KQGLTVDELGDMDELFLNPTHFIQLSRLRAGSKN  519 (523)
T ss_dssp             HTTCBHHHHHTSCCCSSCSCCHHHHHHHHTTCSS
T ss_pred             HCCCCHHHHHhCCcceECCCHHHHHHHHHHhhHh
Confidence            9998886 2 33  68899999999999887543

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=100.00  E-value=1.8e-42  Score=354.03  Aligned_cols=400  Identities=17%  Similarity=0.220  Sum_probs=279.0

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC----CCCcccc-----------------CCC-CCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP----ALTKGYL-----------------FPL-DKKP  108 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~----~l~~~~~-----------------~~~-~~~~  108 (488)
                      ++||+|||||+||++||..|++.|.   +|+|||+++.......    .-++.++                 ... ....
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~---~V~lie~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~g~~~~~~~~   78 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGM---KTACVEKRGALGGTCLNVGCIPSKALLHATHLYHDAHANFARYGLMGGEGVT   78 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEECGGGCE
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCC---eEEEEeCCCCcCCcCCCcCcHhHHHHHHHHHHHHHHHHHHHhcCcccCCCCc
Confidence            5799999999999999999999987   8999999865321100    0000000                 000 0000


Q ss_pred             CCCCCccccc---CCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCC--cEEEeccEEeccCCCCCcCCCCCCC
Q 011351          109 ARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIGG  183 (488)
Q Consensus       109 ~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g--~~i~yd~lVlAtG~~~~~~~~~~g~  183 (488)
                      .++..+....   .........+++++.+++++.++ +..++....++.+.+|  +.+.||+||+|||+.+.. |+.++.
T Consensus        79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~-~~~i~~~~~~v~~~~G~~~~~~~d~lviAtG~~p~~-p~~~g~  156 (468)
T 2qae_A           79 MDSAKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGE-GSFETAHSIRVNGLDGKQEMLETKKTIIATGSEPTE-LPFLPF  156 (468)
T ss_dssp             ECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEE-EEEEETTEEEEEETTSCEEEEEEEEEEECCCEEECC-BTTBCC
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEeeCCEEEEEecCCceEEEEcCEEEECCCCCcCC-CCCCCC
Confidence            0000000000   00000001345567799999875 4457776666777777  679999999999998764 444554


Q ss_pred             CCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHH-HHc
Q 011351          184 YLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY-QQN  262 (488)
Q Consensus       184 ~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l-~~~  262 (488)
                      +.+++.+      .+........+++++|||+|.+|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+ ++.
T Consensus       157 ~~~~v~t------~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~~~  229 (468)
T 2qae_A          157 DEKVVLS------STGALALPRVPKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAPT-LDEDVTNALVGALAKNE  229 (468)
T ss_dssp             CSSSEEC------HHHHHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHHT
T ss_pred             CcCceec------hHHHhhcccCCceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCccccc-CCHHHHHHHHHHHhhcC
Confidence            3334432      2233333346799999999999999999999999999999999999984 8999999999999 999


Q ss_pred             CcEEEcCCeEEEEEeCCCCcEEEEEeC--CC--cEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCCCCCCC
Q 011351          263 GVKFVKGASIKNLEAGSDGRVAAVKLE--DG--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMP  335 (488)
Q Consensus       263 GV~v~~~~~v~~i~~~~~~~v~~v~l~--~g--~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~  335 (488)
                      ||+++++++|++++.++++ + .+.+.  +|  +++++|.||+|+|++|++++  ++++|+..+ +|+|.||+++||+.|
T Consensus       230 gv~i~~~~~v~~i~~~~~~-~-~v~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~  307 (468)
T 2qae_A          230 KMKFMTSTKVVGGTNNGDS-V-SLEVEGKNGKRETVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGDHFETSIP  307 (468)
T ss_dssp             CCEEECSCEEEEEEECSSS-E-EEEEECC---EEEEEESEEEECSCEEECCTTSCHHHHTCCBCTTSCBCCCTTSBCSST
T ss_pred             CcEEEeCCEEEEEEEcCCe-E-EEEEEcCCCceEEEECCEEEECCCcccCCCCCCchhcCCccCCCCCEeECCCcccCCC
Confidence            9999999999999865333 3 45554  66  67999999999999999987  788898876 577999999999999


Q ss_pred             CEEEEceecc-cCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCC--CCCCCceeEeccccCCCCcceeeEEeeCCCC
Q 011351          336 GIFAIGDVAA-FPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT--YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG  412 (488)
Q Consensus       336 ~Ifa~GD~a~-~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~~--~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~  412 (488)
                      ||||+|||+. .+.          .+..|..||+.+|.+|++.. .+  +..+|+  ...++.+       +..+|....
T Consensus       308 ~IyA~GD~~~~~~~----------~~~~A~~~g~~aa~~i~~~~-~~~~~~~~p~--~~~~~~~-------~a~vG~~e~  367 (468)
T 2qae_A          308 DVYAIGDVVDKGPM----------LAHKAEDEGVACAEILAGKP-GHVNYGVIPA--VIYTMPE-------VASVGKSED  367 (468)
T ss_dssp             TEEECGGGBSSSCS----------CHHHHHHHHHHHHHHHTTCC-CCCCTTSCCE--EECSSSE-------EEEEECCHH
T ss_pred             CEEEeeccCCCCCc----------cHhHHHHHHHHHHHHHcCCC-ccCCCCCCCE--EEECCCc-------eEEEeCCHH
Confidence            9999999998 332          45679999999999999743 33  344554  3323221       444554321


Q ss_pred             -------cEEE--E----------ccCCCcEEEEEEE--CCEEEEEEeecCChHHhh-HHHHHHhcCCCCCh--hhhcCC
Q 011351          413 -------ETIE--I----------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQ-LLPTLARSQPFVDK--AKLQQA  468 (488)
Q Consensus       413 -------~~~~--~----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~  468 (488)
                             ++..  .          ......|.+++++  +|+|+|+++++..+.++. .+..+|+++.+++.  ..++.|
T Consensus       368 ~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~  447 (468)
T 2qae_A          368 ELKKEGVAYKVGKFPFNANSRAKAVSTEDGFVKVLVDKATDRILGVHIVCTTAGELIGEACLAMEYGASSEDVGRTCHAH  447 (468)
T ss_dssp             HHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCS
T ss_pred             HHHhcCCCEEEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCC
Confidence                   1111  0          0112468888886  699999998777766644 55667888888762  335889


Q ss_pred             CcHHHHHHHHHccCCc
Q 011351          469 SSVEEALEIARAALPV  484 (488)
Q Consensus       469 ~~~~~~~~~~~~~~~~  484 (488)
                      |+++|++..+++++..
T Consensus       448 Pt~~e~~~~~~~~~~~  463 (468)
T 2qae_A          448 PTMSEALKEACMALFA  463 (468)
T ss_dssp             SCTHHHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHHHhc
Confidence            9999999999876544

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=100.00  E-value=1.8e-42  Score=354.63  Aligned_cols=402  Identities=17%  Similarity=0.233  Sum_probs=280.9

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC----CCCcccc----------------CCC--CCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP----ALTKGYL----------------FPL--DKK  107 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~----~l~~~~~----------------~~~--~~~  107 (488)
                      +++||+|||||+||++||..|++.|.   +|+|||+++.......    .-++.++                +..  ...
T Consensus         5 ~~~dvvIIGgG~aGl~aA~~l~~~g~---~V~liE~~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~g~~~~~~   81 (474)
T 1zmd_A            5 IDADVTVIGSGPGGYVAAIKAAQLGF---KTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRGIEMSEV   81 (474)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTC---CEEEEECSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHSSHHHHTTEEESCE
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCC---eEEEEeCCCCcCCcccccCccchHHHHHHHHHHHHhhhhhHhhCccccCCC
Confidence            45799999999999999999999987   8999999864321000    0000000                000  000


Q ss_pred             CCCCCCccccc---CCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCC-C-cEEEeccEEeccCCCCCcCCCCCC
Q 011351          108 PARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNS-G-KLLKYGSLIVATGCTASRFPEKIG  182 (488)
Q Consensus       108 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~-g-~~i~yd~lVlAtG~~~~~~~~~~g  182 (488)
                      ..++..+....   .........+++++.+++++.+ .+..++.....|.+.+ + +++.||+||+|||+.|.. |+.++
T Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g-~~~~~~~~~~~v~~~~gg~~~~~~d~lViAtGs~p~~-p~i~g  159 (474)
T 1zmd_A           82 RLNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNG-YGKITGKNQVTATKADGGTQVIDTKNILIATGSEVTP-FPGIT  159 (474)
T ss_dssp             EECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-EEEEEETTEEEEECTTSCEEEEEEEEEEECCCEEECC-CTTCC
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEecCCEEEEEecCCCcEEEEeCEEEECCCCCCCC-CCCCC
Confidence            00000000000   0000000134566789999987 4556776555666666 4 579999999999998864 44555


Q ss_pred             CCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHc
Q 011351          183 GYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN  262 (488)
Q Consensus       183 ~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~  262 (488)
                      .+..++.+      .+........+++++|||+|.+|+|+|..|.+.|.+|+++++.++++++.+++++.+.+.+.+++.
T Consensus       160 ~~~~~v~t------~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~  233 (474)
T 1zmd_A          160 IDEDTIVS------STGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQ  233 (474)
T ss_dssp             CCSSSEEC------HHHHTTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCSSCCHHHHHHHHHHHHHT
T ss_pred             CCcCcEEc------HHHHhhccccCceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCcccCHHHHHHHHHHHHHC
Confidence            43333332      222222223578999999999999999999999999999999999998568999999999999999


Q ss_pred             CcEEEcCCeEEEEEeCCCCcEEEEE-----eCCCcEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCCCCCC
Q 011351          263 GVKFVKGASIKNLEAGSDGRVAAVK-----LEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRM  334 (488)
Q Consensus       263 GV~v~~~~~v~~i~~~~~~~v~~v~-----l~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~  334 (488)
                      ||+++++++|++++.++++.+ .+.     ..+++++++|.||+|+|++|++++  ++++|++.+ +|+|.||+++||+.
T Consensus       234 Gv~i~~~~~v~~i~~~~~~~~-~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~  312 (474)
T 1zmd_A          234 GFKFKLNTKVTGATKKSDGKI-DVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKI  312 (474)
T ss_dssp             TCEEECSEEEEEEEECTTSCE-EEEEEETTSCCCEEEEESEEEECSCEEECCTTSSHHHHTCCCCTTSCCCCCTTCBCSS
T ss_pred             CCEEEeCceEEEEEEcCCceE-EEEEEecCCCCceEEEcCEEEECcCCCcCCCcCCchhcCCccCCCCCEEECcCCccCC
Confidence            999999999999986543323 344     356778999999999999999987  788888876 57799999999999


Q ss_pred             CCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeEeccccCCCCcceeeEEeeCCCC-
Q 011351          335 PGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-  412 (488)
Q Consensus       335 ~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~-  412 (488)
                      |+|||+|||+..+.          .+..|..||+.+|.||++... ..|..+|+++  .++..       +..+|.... 
T Consensus       313 ~~IyA~GD~~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~--~~~~~-------~a~vG~~e~~  373 (474)
T 1zmd_A          313 PNIYAIGDVVAGPM----------LAHKAEDEGIICVEGMAGGAVHIDYNCVPSVI--YTHPE-------VAWVGKSEEQ  373 (474)
T ss_dssp             TTEEECGGGSSSCC----------CHHHHHHHHHHHHHHHTTCCCCCCGGGCCEEE--CSSSE-------EEEEECCHHH
T ss_pred             CCEEEeeecCCCCc----------cHHHHHHHHHHHHHHhcCCCCcCCCCCCCEEE--ECCCC-------eEEEeCCHHH
Confidence            99999999997542          455799999999999997432 2345567643  22211       444554322 


Q ss_pred             ------cEEE--E----------ccCCCcEEEEEEE--CCEEEEEEeecCChHH-hhHHHHHHhcCCCCC-h-hhhcCCC
Q 011351          413 ------ETIE--I----------GNFDPKIATFWID--SGKLKGVLVESGSPEE-FQLLPTLARSQPFVD-K-AKLQQAS  469 (488)
Q Consensus       413 ------~~~~--~----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~-~-~~~~~~~  469 (488)
                            ++..  .          ......|.+++++  +|+|+|+++++..+.+ +..+..+|+++.+++ . ..++.||
T Consensus       374 a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~~~~~P  453 (474)
T 1zmd_A          374 LKEEGIEYKVGKFPFAANSRAKTNADTDGMVKILGQKSTDRVLGAHILGPGAGEMVNEAALALEYGASCEDIARVCHAHP  453 (474)
T ss_dssp             HHHHTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHHSCCCTT
T ss_pred             HHhcCCCEEEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCC
Confidence                  1111  0          0112468888887  6999999987777655 456677789888886 2 3458899


Q ss_pred             cHHHHHHHHHccC
Q 011351          470 SVEEALEIARAAL  482 (488)
Q Consensus       470 ~~~~~~~~~~~~~  482 (488)
                      +++|++..++.++
T Consensus       454 t~~e~~~~~~~~~  466 (474)
T 1zmd_A          454 TLSEAFREANLAA  466 (474)
T ss_dssp             CTHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            9999999998654

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=100.00  E-value=1.6e-42  Score=356.89  Aligned_cols=400  Identities=19%  Similarity=0.213  Sum_probs=283.9

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHc---CCCCCcEEEEcCCCCCCCC---C-CCCCcccc---------CCC---------C
Q 011351           51 NREFVIVGGGNAAGYAARTFVEH---GMADGRLCIVSKEAYAPYE---R-PALTKGYL---------FPL---------D  105 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~---g~~~~~V~lie~~~~~~~~---~-~~l~~~~~---------~~~---------~  105 (488)
                      ++||+|||||+||++||.+|++.   |.   +|+|||+++ ....   . ..-++.++         ...         .
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~---~V~liE~~~-~GG~~~~~g~~psk~l~~~a~~~~~~~~~~~~g~~~~~~   77 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETT---QVTVIDCDG-IGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFD   77 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTE---EEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC----
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcC---EEEEEeCCC-cCCcccCcCccchHHHHHHHHHHHHHHHHHhCCCccccC
Confidence            47999999999999999999998   76   899999986 2110   0 00000000         000         0


Q ss_pred             CCCCCCCCccccc---CCCCCCCCHhHHHHCCCeEEeCCcEEEEeC------CCcEEEeCCCc--EEEeccEEeccCCCC
Q 011351          106 KKPARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDI------EKQTLITNSGK--LLKYGSLIVATGCTA  174 (488)
Q Consensus       106 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~------~~~~v~~~~g~--~i~yd~lVlAtG~~~  174 (488)
                      ....++..+....   .........+++++.+++++.+ .+..+++      ....|.+.+|+  .+.||+||+|||+.+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~i~~~~~~~~~~~~V~~~~g~~~~~~~d~lviATGs~p  156 (499)
T 1xdi_A           78 DAKISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAG-RGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASP  156 (499)
T ss_dssp             --CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-EEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEE
T ss_pred             CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEecCcccCCCCEEEEEeCCCcEEEEEeCEEEEcCCCCC
Confidence            0000000000000   0000001235567789999987 5777877      22345556676  799999999999988


Q ss_pred             CcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHH
Q 011351          175 SRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR  254 (488)
Q Consensus       175 ~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~  254 (488)
                      .. |++++.+..++.+..+..      +....+++++|||+|.+|+|+|..+.+.|.+|+++++.+++++. +++++.+.
T Consensus       157 ~~-p~i~g~~~~~v~~~~~~~------~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~  228 (499)
T 1xdi_A          157 RI-LPSAQPDGERILTWRQLY------DLDALPDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPY-EDADAALV  228 (499)
T ss_dssp             CC-CGGGCCCSSSEEEGGGGG------GCSSCCSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSCC-SSHHHHHH
T ss_pred             CC-CCCCCCCcCcEEehhHhh------hhhccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-cCHHHHHH
Confidence            63 555665555555543222      22235789999999999999999999999999999999999986 89999999


Q ss_pred             HHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCCC
Q 011351          255 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFR  331 (488)
Q Consensus       255 ~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~  331 (488)
                      +.+.+++.||+++++++|++++.++ +.+ .+.+.+|+++++|.||+|+|++|++++  ++++|+..+ +|+|.||+++|
T Consensus       229 l~~~l~~~GV~i~~~~~V~~i~~~~-~~v-~v~~~~g~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~~~  306 (499)
T 1xdi_A          229 LEESFAERGVRLFKNARAASVTRTG-AGV-LVTMTDGRTVEGSHALMTIGSVPNTSGLGLERVGIQLGRGNYLTVDRVSR  306 (499)
T ss_dssp             HHHHHHHTTCEEETTCCEEEEEECS-SSE-EEEETTSCEEEESEEEECCCEEECCSSSCTTTTTCCCBTTTBCCCCSSSB
T ss_pred             HHHHHHHCCCEEEeCCEEEEEEEeC-CEE-EEEECCCcEEEcCEEEECCCCCcCCCcCCchhcCceECCCCCEEECCCcc
Confidence            9999999999999999999998643 334 577888989999999999999999988  788898876 47799999999


Q ss_pred             CCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCCCCceeEeccccCCCCcceeeEEeeC
Q 011351          332 TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGD  409 (488)
Q Consensus       332 t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~g~  409 (488)
                      |+.|+|||+|||+..+.          .+..|..||+.+|.+|++....  .+..+|+++  .++.       .+..+|.
T Consensus       307 t~~~~IyA~GD~~~~~~----------l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~--~~~~-------~~a~vG~  367 (499)
T 1xdi_A          307 TLATGIYAAGDCTGLLP----------LASVAAMQGRIAMYHALGEGVSPIRLRTVAATV--FTRP-------EIAAVGV  367 (499)
T ss_dssp             CSSTTEEECSGGGTSCS----------CHHHHHHHHHHHHHHHTTCCCCCCCGGGCEEEE--CSSS-------EEEEEES
T ss_pred             cCCCCEEEEeccCCCcc----------cHHHHHHHHHHHHHHhcCCCCccCCCCCCcEEE--EecC-------CceEeCC
Confidence            99999999999998542          4556999999999999975222  344566532  2222       1455665


Q ss_pred             CCC-------cEEE--E----------ccCCCcEEEEEEE--CCEEEEEEeecCChHHh-hHHHHHHhcCCCCCh--hhh
Q 011351          410 NVG-------ETIE--I----------GNFDPKIATFWID--SGKLKGVLVESGSPEEF-QLLPTLARSQPFVDK--AKL  465 (488)
Q Consensus       410 ~~~-------~~~~--~----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~  465 (488)
                      ...       ++..  .          ......|.+++++  +|+|+|+++++..+.++ ..+..+|+++.+++.  ..+
T Consensus       368 ~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~~  447 (499)
T 1xdi_A          368 PQSVIDAGSVAARTIMLPLRTNARAKMSEMRHGFVKIFCRRSTGVVIGGVVVAPIASELILPIAVAVQNRITVNELAQTL  447 (499)
T ss_dssp             CHHHHHHTSSCEEEEEEESTTSHHHHHTTCSSCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHTSB
T ss_pred             CHHHHHhCCCCEEEEEEecCcccceeecCCCceEEEEEEECCCCEEEEEEEECCchHHHHHHHHHHHHCCCCHHHHhccc
Confidence            432       1111  0          0112458888887  59999999877777664 455667888888862  336


Q ss_pred             cCCCcHHHHHHHHHccCCc
Q 011351          466 QQASSVEEALEIARAALPV  484 (488)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~  484 (488)
                      ..||+++|++..+++++..
T Consensus       448 ~~~Pt~~e~~~~~~~~~~~  466 (499)
T 1xdi_A          448 AVYPSLSGSITEAARRLMA  466 (499)
T ss_dssp             CCSSSTHHHHHHHHHHHCC
T ss_pred             ccCCCchHHHHHHHHHHhc
Confidence            8889999999999876543

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4e-42  Score=351.98  Aligned_cols=396  Identities=19%  Similarity=0.225  Sum_probs=275.6

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCC----CC-cc---------ccCCCCCCCCCC----
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA----LT-KG---------YLFPLDKKPARL----  111 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~----l~-~~---------~~~~~~~~~~~~----  111 (488)
                      +++||+|||||+||++||..|++.|.   +|+|||++.. ... ..    .+ +.         .+..........    
T Consensus        10 ~~~dVvVIGgG~aGl~aA~~l~~~g~---~V~liE~~~~-GG~-~~n~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~   84 (479)
T 2hqm_A           10 KHYDYLVIGGGSGGVASARRAASYGA---KTLLVEAKAL-GGT-CVNVGCVPKKVMWYASDLATRVSHANEYGLYQNLPL   84 (479)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTSC---CEEEEESSCT-THH-HHHHSHHHHHHHHHHHHHHHHHTTTTTTTBSTTSCC
T ss_pred             ccCCEEEEcCCHHHHHHHHHHHHCCC---cEEEEeCCCc-CCc-CcccCcHHHHHHHHHHHHHHHHHhHHhcCccccccc
Confidence            45899999999999999999999887   8999999742 100 00    00 00         000000000000    


Q ss_pred             ----CCccc--ccC------CCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCc--EEEeccEEeccCCCCCcC
Q 011351          112 ----PGFHT--CVG------SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRF  177 (488)
Q Consensus       112 ----~~~~~--~~~------~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~--~i~yd~lVlAtG~~~~~~  177 (488)
                          ..+..  ...      ..........+++.+++++.+ .+..+++....+.+.+|+  ++.||+||||||+.|.. 
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~i~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~-  162 (479)
T 2hqm_A           85 DKEHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFG-WARFNKDGNVEVQKRDNTTEVYSANHILVATGGKAIF-  162 (479)
T ss_dssp             SGGGCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEE-EEEECTTSCEEEEESSSCCEEEEEEEEEECCCEEECC-
T ss_pred             ccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEeeCCEEEEEeCCCcEEEEEeCEEEEcCCCCCCC-
Confidence                00000  000      000000123345679999886 577777666667777776  79999999999998764 


Q ss_pred             C-CCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHH
Q 011351          178 P-EKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE  256 (488)
Q Consensus       178 ~-~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~  256 (488)
                      | +++|.+  .   ..   +++.+......+++++|||+|.+|+|+|..|.++|.+|+++++.+++++. +++++.+.+.
T Consensus       163 p~~i~g~~--~---~~---~~~~~~~l~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~  233 (479)
T 2hqm_A          163 PENIPGFE--L---GT---DSDGFFRLEEQPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLRK-FDECIQNTIT  233 (479)
T ss_dssp             CTTSTTGG--G---SB---CHHHHHHCSSCCSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHHHHHHH
T ss_pred             CCCCCCcc--c---cc---chHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCccccc-cCHHHHHHHH
Confidence            4 444421  1   11   23344444456899999999999999999999999999999999999974 8999999999


Q ss_pred             HHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCC-cEEEcCEEEEeecCccCChh-hhhcCCccc-CCCEEeCCCCCCC
Q 011351          257 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-STIDADTIVIGIGAKPTVSP-FERVGLNSS-VGGIQVDGQFRTR  333 (488)
Q Consensus       257 ~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g-~~i~~D~vi~a~G~~p~~~~-~~~~gl~~~-~g~i~vd~~~~t~  333 (488)
                      +.+++.||+++++++|++++..+++.+..+.+++| +++++|.||+|+|++|++.+ ++.+|++.+ +|+|.||++++|+
T Consensus       234 ~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~l~l~~~gl~~~~~G~i~vd~~~~t~  313 (479)
T 2hqm_A          234 DHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHLGMGSENVGIKLNSHDQIIADEYQNTN  313 (479)
T ss_dssp             HHHHHHTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEECCCSSGGGGTCCBCTTSCBCCCTTCBCS
T ss_pred             HHHHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCCccccChhhcCceECCCCCEeECCCCccC
Confidence            99999999999999999998654443446888899 78999999999999999877 788899876 6789999999999


Q ss_pred             CCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCC---C--CCCCCCCceeEeccccCCCCcceeeEEee
Q 011351          334 MPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ---T--HTYDYLPYFYSRVFEYEGSPRKVWWQFFG  408 (488)
Q Consensus       334 ~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~---~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~g  408 (488)
                      .|+|||+|||+..+.          .+..|..||+.+|.||++..   .  ..|..+|+.   .|..+-      +..+|
T Consensus       314 ~~~IyA~GD~~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~p~~---~~~~~~------~~~vG  374 (479)
T 2hqm_A          314 VPNIYSLGDVVGKVE----------LTPVAIAAGRKLSNRLFGPEKFRNDKLDYENVPSV---IFSHPE------AGSIG  374 (479)
T ss_dssp             STTEEECGGGTTSSC----------CHHHHHHHHHHHHHHHHSCGGGTTCCCCCTTCCEE---ECCSSC------EEEEE
T ss_pred             CCCEEEEEecCCCcc----------cHHHHHHHHHHHHHHhcCCCccCcccCCCCCCCeE---EECCCC------eEEEe
Confidence            999999999986432          56679999999999999743   2  234456642   222110      33344


Q ss_pred             CCCCc---------EEEE------------ccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC-h-
Q 011351          409 DNVGE---------TIEI------------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-  462 (488)
Q Consensus       409 ~~~~~---------~~~~------------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-  462 (488)
                      ....+         +...            ......+.|++++  +++|+|+++++.++.++... ..+|+.+.+++ . 
T Consensus       375 l~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~  454 (479)
T 2hqm_A          375 ISEKEAIEKYGKENIKVYNSKFTAMYYAMLSEKSPTRYKIVCAGPNEKVVGLHIVGDSSAEILQGFGVAIKMGATKADFD  454 (479)
T ss_dssp             CCHHHHHHHHCGGGEEEEEEEECCGGGGGCSSCCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHH
T ss_pred             CCHHHHHhcCCCCcEEEEEEeccHHHHHhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHh
Confidence            32110         1110            1112457788775  59999999977777776655 44578888776 2 


Q ss_pred             hhhcCCCcHHHHHHHHHc
Q 011351          463 AKLQQASSVEEALEIARA  480 (488)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~  480 (488)
                      ..++.|||++|++..++.
T Consensus       455 ~~~~~hPt~~e~~~~~~~  472 (479)
T 2hqm_A          455 NCVAIHPTSAEELVTMRG  472 (479)
T ss_dssp             TSCCCSSCSGGGGGSCC-
T ss_pred             hCcCCCCChHHHHHHHHH
Confidence            336889999999876653

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=100.00  E-value=4.3e-42  Score=351.15  Aligned_cols=397  Identities=17%  Similarity=0.212  Sum_probs=280.2

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---------------------CCCCCccc-cCCCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---------------------RPALTKGY-LFPLDKK  107 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~---------------------~~~l~~~~-~~~~~~~  107 (488)
                      .++||+|||||+||+++|.+|++.|.   +|+|||++.. ...                     .+..+. + -......
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~---~V~lie~~~~-GG~~~~~g~ip~k~l~~~~~~~~~~~~~~~-~~g~~~~~~   77 (467)
T 1zk7_A            3 PPVQVAVIGSGGAAMAAALKAVEQGA---QVTLIERGTI-GGTCVNVGCVPSKIMIRAAHIAHLRRESPF-DGGIAATVP   77 (467)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSST-THHHHHHSHHHHHHHHHHHHHHHHHHCCTT-TTTSCCCCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCCC-CccccCCCccchHHHHHHHHHHHHHhhhhh-cCCccCCCC
Confidence            46899999999999999999999987   8999999831 100                     000000 0 0000000


Q ss_pred             CCCCCCcccccC---CCCC-CCCHhHHHHC-CCeEEeCCcEEEEeCCCcEEEeCCC--cEEEeccEEeccCCCCCcCCCC
Q 011351          108 PARLPGFHTCVG---SGGE-RQTPEWYKEK-GIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEK  180 (488)
Q Consensus       108 ~~~~~~~~~~~~---~~~~-~~~~~~~~~~-~i~~~~~~~v~~id~~~~~v~~~~g--~~i~yd~lVlAtG~~~~~~~~~  180 (488)
                      ..++..+.....   .... ....+++++. +++++.+ ++..++....++.+.+|  +.+.||+||||||+.|. .|++
T Consensus        78 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~-~p~i  155 (467)
T 1zk7_A           78 TIDRSKLLAQQQARVDELRHAKYEGILGGNPAITVVHG-EARFKDDQSLTVRLNEGGERVVMFDRCLVATGASPA-VPPI  155 (467)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEE-EEEEEETTEEEEEETTSSEEEEECSEEEECCCEEEC-CCCC
T ss_pred             ccCHHHHHHHHHHHHHHHhhhhHHHHHhccCCeEEEEE-EEEEccCCEEEEEeCCCceEEEEeCEEEEeCCCCCC-CCCC
Confidence            000000000000   0000 0123445566 8999886 68888877667777788  67999999999999886 4555


Q ss_pred             CCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHH
Q 011351          181 IGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ  260 (488)
Q Consensus       181 ~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~  260 (488)
                      +|.+..++.   +   .+.+.+....+++++|||+|.+|+|+|..|.+.|.+|+++++.+++++  +++++.+.+.+.++
T Consensus       156 ~G~~~~~~~---~---~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~--~~~~~~~~l~~~l~  227 (467)
T 1zk7_A          156 PGLKESPYW---T---STEALASDTIPERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFFR--EDPAIGEAVTAAFR  227 (467)
T ss_dssp             TTTTTSCCB---C---HHHHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT--SCHHHHHHHHHHHH
T ss_pred             CCCCcCcee---c---HHHHhcccccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccCC--CCHHHHHHHHHHHH
Confidence            654332222   2   333444344689999999999999999999999999999999999987  79999999999999


Q ss_pred             HcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCCCCCCCCE
Q 011351          261 QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGI  337 (488)
Q Consensus       261 ~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~I  337 (488)
                      +.||+++++++|++++.+ ++ ...+.++ +.++++|.||+|+|.+|++++  ++..+++.+ +|+|.||++++|+.|+|
T Consensus       228 ~~Gv~i~~~~~v~~i~~~-~~-~~~v~~~-~~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~i  304 (467)
T 1zk7_A          228 AEGIEVLEHTQASQVAHM-DG-EFVLTTT-HGELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVIDQGMRTSNPNI  304 (467)
T ss_dssp             HTTCEEETTCCEEEEEEE-TT-EEEEEET-TEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCTTCBCSSTTE
T ss_pred             hCCCEEEcCCEEEEEEEe-CC-EEEEEEC-CcEEEcCEEEECCCCCcCCCcCCchhcCCcCCCCCCEEECCCcccCCCCE
Confidence            999999999999999854 23 2356665 457999999999999999875  578888876 56799999999999999


Q ss_pred             EEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeEeccccCCCCcceeeEEeeCCCC----
Q 011351          338 FAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG----  412 (488)
Q Consensus       338 fa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~----  412 (488)
                      ||+|||+..+.          .+..|..||+.+|.||++... ..+..+|++  ..++.       .+..+|....    
T Consensus       305 ya~GD~~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~--~~~~~-------~~a~vG~~~~~a~~  365 (467)
T 1zk7_A          305 YAAGDCTDQPQ----------FVYVAAAAGTRAAINMTGGDAALDLTAMPAV--VFTDP-------QVATVGYSEAEAHH  365 (467)
T ss_dssp             EECSTTBSSCC----------CHHHHHHHHHHHHHHHTTCCCCCCCTTCEEE--ECSSS-------EEEEEECCHHHHHH
T ss_pred             EEEeccCCCcc----------cHHHHHHHHHHHHHHHcCCCcccCCCCCCEE--EecCC-------ceEEEecCHHHHHh
Confidence            99999998643          456799999999999997532 234445543  22221       1444554321    


Q ss_pred             ---cEEE--E----------ccCCCcEEEEEEE--CCEEEEEEeecCChHHhh-HHHHHHhcCCCCCh--hhhcCCCcHH
Q 011351          413 ---ETIE--I----------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQ-LLPTLARSQPFVDK--AKLQQASSVE  472 (488)
Q Consensus       413 ---~~~~--~----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~  472 (488)
                         ++..  .          ......+.+++++  +|+|+|+++++..+.+.. .+..+|+++.+++.  ...+.|||++
T Consensus       366 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~  445 (467)
T 1zk7_A          366 DGIETDSRTLTLDNVPRALANFDTRGFIKLVIEEGSHRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMV  445 (467)
T ss_dssp             TTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTSTT
T ss_pred             cCCCeEEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHH
Confidence               1111  0          0113468888886  699999998777766644 56777899988762  3358899999


Q ss_pred             HHHHHHHccCC
Q 011351          473 EALEIARAALP  483 (488)
Q Consensus       473 ~~~~~~~~~~~  483 (488)
                      |++..+++++.
T Consensus       446 e~~~~~~~~~~  456 (467)
T 1zk7_A          446 EGLKLAAQTFN  456 (467)
T ss_dssp             HHHHHHHHTTT
T ss_pred             HHHHHHHHHHh
Confidence            99999987654

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=100.00  E-value=1.9e-42  Score=353.40  Aligned_cols=399  Identities=21%  Similarity=0.246  Sum_probs=275.2

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---CC-CCCccccCC-----C---CCCCCCCC-----C
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---RP-ALTKGYLFP-----L---DKKPARLP-----G  113 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~---~~-~l~~~~~~~-----~---~~~~~~~~-----~  113 (488)
                      ++||+|||||+||+++|..|++.|.   +|+|||++.. ...   .. .-++.++..     .   ......++     .
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~~G~---~V~liE~~~~-gG~~~~~g~~psk~ll~~~~~~~~~~~~~~~~g~~~~~~~~   78 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQLGL---STAIVEPKYW-GGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGISGEVTFD   78 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSCT-THHHHHHSHHHHHHHHHHHHHHHHHHHHTTTTTEEECCEEC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC---eEEEEeCCCC-CCcccccCchhhHHHHHHHHHHHHHHHHHHhcCCCCCCccC
Confidence            4799999999999999999999987   8999999731 100   00 000000000     0   00000000     0


Q ss_pred             cccccC------CCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCC--cEEEeccEEeccCCCCCcCCCCCCCCC
Q 011351          114 FHTCVG------SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIGGYL  185 (488)
Q Consensus       114 ~~~~~~------~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g--~~i~yd~lVlAtG~~~~~~~~~~g~~~  185 (488)
                      +.....      ........+++++.+++++.++.+. ++....++.+.+|  +++.||+||+|||+.+.. |+.++.+.
T Consensus        79 ~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~~-id~~~v~V~~~~G~~~~~~~d~lViAtG~~~~~-~~~~g~~~  156 (464)
T 2a8x_A           79 YGIAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTF-ADANTLLVDLNDGGTESVTFDNAIIATGSSTRL-VPGTSLSA  156 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEE-SSSSEEEEEETTSCCEEEEEEEEEECCCEEECC-CTTCCCBT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE-ecCCeEEEEeCCCceEEEEcCEEEECCCCCCCC-CCCCCCCc
Confidence            000000      0000001345567899999875443 5544445666677  679999999999998864 44444322


Q ss_pred             CcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcE
Q 011351          186 PGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK  265 (488)
Q Consensus       186 ~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~  265 (488)
                      . +   .+..   ........+++++|||+|.+|+|+|..|.++|.+|+++++.+++++ .+++++.+.+.+.+++.||+
T Consensus       157 ~-~---~~~~---~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~gv~  228 (464)
T 2a8x_A          157 N-V---VTYE---EQILSRELPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALP-NEDADVSKEIEKQFKKLGVT  228 (464)
T ss_dssp             T-E---ECHH---HHHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-TSCHHHHHHHHHHHHHHTCE
T ss_pred             e-E---EecH---HHhhccccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCcccc-ccCHHHHHHHHHHHHHcCCE
Confidence            1 2   2222   3333233579999999999999999999999999999999999998 48999999999999999999


Q ss_pred             EEcCCeEEEEEeCCCCcEEEEEeC-CC--cEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCCCCCCCCEEE
Q 011351          266 FVKGASIKNLEAGSDGRVAAVKLE-DG--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFA  339 (488)
Q Consensus       266 v~~~~~v~~i~~~~~~~v~~v~l~-~g--~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa  339 (488)
                      +++++++++++.+++ .+ .+.+. +|  +++++|.|++|+|++|++++  ++++|+..+ +|+|.||+++||+.|||||
T Consensus       229 i~~~~~v~~i~~~~~-~~-~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t~~~~IyA  306 (464)
T 2a8x_A          229 ILTATKVESIADGGS-QV-TVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVDDYMRTNVGHIYA  306 (464)
T ss_dssp             EECSCEEEEEEECSS-CE-EEEEESSSCEEEEEESEEEECSCEEECCSSSCHHHHTCCBCTTSSBCCCTTSBCSSTTEEE
T ss_pred             EEeCcEEEEEEEcCC-eE-EEEEEcCCceEEEEcCEEEECCCCCccCCCCCchhcCCccCCCCCEeECcCCccCCCCEEE
Confidence            999999999986433 33 45554 56  67999999999999999987  788898876 5779999999999999999


Q ss_pred             EceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCC---CCCCCceeEeccccCCCCcceeeEEeeCCCC----
Q 011351          340 IGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT---YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG----  412 (488)
Q Consensus       340 ~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~~---~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~----  412 (488)
                      +|||+..+.          .+..|..||+.+|.||++....+   |..+|++  ..++..       +..+|....    
T Consensus       307 ~GD~~~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~--~~~~~~-------~a~vG~~e~~a~~  367 (464)
T 2a8x_A          307 IGDVNGLLQ----------LAHVAEAQGVVAAETIAGAETLTLGDHRMLPRA--TFCQPN-------VASFGLTEQQARN  367 (464)
T ss_dssp             CGGGGCSSC----------SHHHHHHHHHHHHHHHHTCCCCCCCCGGGSCEE--ECSSSE-------EEEEECCHHHHHH
T ss_pred             eECcCCCcc----------CHHHHHHHHHHHHHHhcCCCCcccCCCCCCCEE--EECCCC-------eEEEcCCHHHHHh
Confidence            999997532          45579999999999999733333   4455643  222211       344554321    


Q ss_pred             ---cEEE--E----------ccCCCcEEEEEEE--CCEEEEEEeecCChHHhh-HHHHHHhcCCCCCh--hhhcCCCcHH
Q 011351          413 ---ETIE--I----------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQ-LLPTLARSQPFVDK--AKLQQASSVE  472 (488)
Q Consensus       413 ---~~~~--~----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~  472 (488)
                         ++..  .          ......|.|++++  +++|+|+++++..+.++. .+..+|+++.+++.  ..++.||+++
T Consensus       368 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~  447 (464)
T 2a8x_A          368 EGYDVVVAKFPFTANAKAHGVGDPSGFVKLVADAKHGELLGGHLVGHDVAELLPELTLAQRWDLTASELARNVHTHPTMS  447 (464)
T ss_dssp             TTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTTEEEEEEEEETTGGGGHHHHHHHHHTTCBHHHHTTSCCCTTCTT
T ss_pred             cCCCEEEEEEEcchhhhhhhcCCCcEEEEEEEECCCCEEEEEEEECcCHHHHHHHHHHHHHCCCCHHHHhhCccCCCChH
Confidence               1111  0          0113468888886  699999998777766544 55667888888762  3358889999


Q ss_pred             HHHHHHHccCCc
Q 011351          473 EALEIARAALPV  484 (488)
Q Consensus       473 ~~~~~~~~~~~~  484 (488)
                      |++..+++++..
T Consensus       448 e~~~~~~~~~~~  459 (464)
T 2a8x_A          448 EALQECFHGLVG  459 (464)
T ss_dssp             HHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhc
Confidence            999999876543

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=100.00  E-value=6.3e-43  Score=358.40  Aligned_cols=400  Identities=17%  Similarity=0.229  Sum_probs=274.5

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC---CCC-Ccccc----------------CCCCCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER---PAL-TKGYL----------------FPLDKKPA  109 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~---~~l-~~~~~----------------~~~~~~~~  109 (488)
                      .++||+|||||+||+++|..|++.|.   +|+|||+++......   ... ++.++                ........
T Consensus         5 ~~~dVvIIGaG~aGl~aA~~l~~~G~---~V~liE~~~~~GG~~~~~g~~psk~ll~~~~~~~~~~~~~~~gi~~~~~~~   81 (482)
T 1ojt_A            5 AEYDVVVLGGGPGGYSAAFAAADEGL---KVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEPEL   81 (482)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCC---eEEEEeCCCCCCCceeeecccchHHHHHHHHHHHHHHHHHhCCcccCCCcc
Confidence            35799999999999999999999987   899999975432100   000 00000                00000000


Q ss_pred             CCCCccccc---CCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCC------------cEEEeccEEeccCCCC
Q 011351          110 RLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG------------KLLKYGSLIVATGCTA  174 (488)
Q Consensus       110 ~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g------------~~i~yd~lVlAtG~~~  174 (488)
                      ++..+....   ..........++++.+++++.++.+. ++.....+.+.+|            .++.||+||+|||+.+
T Consensus        82 ~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~~~~~v~v~~~~g~~~~~~~~~g~~~~i~ad~lViAtGs~p  160 (482)
T 1ojt_A           82 DIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQF-LDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRV  160 (482)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEE-EETTEEEEEEEEEEETTEEEEEEEEEEEEEEEEEECCCEEE
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEE-ccCCEEEEEecCCcccccccccCcceEEEcCEEEECCCCCC
Confidence            000000000   00000001234567899999875443 5543334444455            5799999999999987


Q ss_pred             CcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHH
Q 011351          175 SRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR  254 (488)
Q Consensus       175 ~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~  254 (488)
                      ..++.++. + ..+.   +   .+...+....+++++|||+|.+|+|+|..|.++|.+|+++++.+++++. +++++.+.
T Consensus       161 ~~~~~i~~-~-~~v~---~---~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~-~~~~~~~~  231 (482)
T 1ojt_A          161 TKLPFIPE-D-PRII---D---SSGALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG-ADRDLVKV  231 (482)
T ss_dssp             CCCSSCCC-C-TTEE---C---HHHHTTCCCCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHH
T ss_pred             CCCCCCCc-c-CcEE---c---HHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc-cCHHHHHH
Confidence            64432332 1 1232   2   2223232335799999999999999999999999999999999999985 89999999


Q ss_pred             HHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCC----CcEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeC
Q 011351          255 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED----GSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVD  327 (488)
Q Consensus       255 ~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~----g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd  327 (488)
                      +.+.+++.||++++++++++++.+++ . ..+.+.+    |+++++|.|++|+|++|++++  ++++|+..+ +|+|.||
T Consensus       232 l~~~l~~~gV~i~~~~~v~~i~~~~~-~-~~v~~~~~~~~g~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd  309 (482)
T 1ojt_A          232 WQKQNEYRFDNIMVNTKTVAVEPKED-G-VYVTFEGANAPKEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTDRGFIEVD  309 (482)
T ss_dssp             HHHHHGGGEEEEECSCEEEEEEEETT-E-EEEEEESSSCCSSCEEESCEEECCCEEECGGGTTGGGTTCCCCTTSCCCCC
T ss_pred             HHHHHHhcCCEEEECCEEEEEEEcCC-e-EEEEEeccCCCceEEEcCEEEECcCCCcCCCCCChhhcCceeCCCCCEeeC
Confidence            99999999999999999999985432 2 3566666    778999999999999999987  688899876 4779999


Q ss_pred             CCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCC--CCCCCceeEeccccCCCCcceeeE
Q 011351          328 GQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT--YDYLPYFYSRVFEYEGSPRKVWWQ  405 (488)
Q Consensus       328 ~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~~--~~~~p~~~~~~~~~~g~~~~~~~~  405 (488)
                      +++||+.|||||+|||+..+.          .+..|..||+.+|.||++.. .+  +..+|+  ...++.+       +.
T Consensus       310 ~~~~t~~~~IyA~GD~~~~~~----------l~~~A~~~g~~aa~~i~g~~-~~~~~~~~p~--~~~~~~~-------~a  369 (482)
T 1ojt_A          310 KQMRTNVPHIYAIGDIVGQPM----------LAHKAVHEGHVAAENCAGHK-AYFDARVIPG--VAYTSPE-------VA  369 (482)
T ss_dssp             TTSBCSSTTEEECGGGTCSSC----------CHHHHHHHHHHHHHHHTTCC-CCCCCCCCCE--EECSSSC-------EE
T ss_pred             CCcccCCCCEEEEEcccCCCc----------cHHHHHHHHHHHHHHHcCCC-ccCCCCCCCE--EEEcCCC-------eE
Confidence            999999999999999998532          45679999999999999743 33  444554  2322221       44


Q ss_pred             EeeCCCC-------cEEE--E----------ccCCCcEEEEEE--ECCEEEEEEeecCChHHhh-HHHHHHhcCCCCC-h
Q 011351          406 FFGDNVG-------ETIE--I----------GNFDPKIATFWI--DSGKLKGVLVESGSPEEFQ-LLPTLARSQPFVD-K  462 (488)
Q Consensus       406 ~~g~~~~-------~~~~--~----------~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~-~  462 (488)
                      .+|....       ++..  .          ......|.++++  ++|+|+|+++++..+.++. .+..+|+++.+++ .
T Consensus       370 ~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l  449 (482)
T 1ojt_A          370 WVGETELSAKASARKITKANFPWAASGRAIANGCDKPFTKLIFDAETGRIIGGGIVGPNGGDMIGEVCLAIEMGCDAADI  449 (482)
T ss_dssp             EEECCHHHHHHHTCCEEEEEEEGGGCHHHHHTTCCSCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHH
T ss_pred             EEeCCHHHHHhcCCCEEEEEEEcCcchHHhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHH
Confidence            4554321       1111  1          011245888888  4699999998777766655 4455688888876 2


Q ss_pred             -hhhcCCCcHHHHHHHHHccCCc
Q 011351          463 -AKLQQASSVEEALEIARAALPV  484 (488)
Q Consensus       463 -~~~~~~~~~~~~~~~~~~~~~~  484 (488)
                       ..++.|||++|++..|++++..
T Consensus       450 ~~~~~~~Pt~~e~~~~a~~~~~~  472 (482)
T 1ojt_A          450 GKTIHPHPTLGESIGMAAEVALG  472 (482)
T ss_dssp             HTSCCCSSSSTTHHHHHHHHHHT
T ss_pred             hcCccCCCCHHHHHHHHHHHHhc
Confidence             3368899999999999876543

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=100.00  E-value=9.1e-43  Score=357.29  Aligned_cols=404  Identities=19%  Similarity=0.255  Sum_probs=276.4

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCC----CCccccCCC-----CCCCCCCCCcccccC-
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA----LTKGYLFPL-----DKKPARLPGFHTCVG-  119 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~----l~~~~~~~~-----~~~~~~~~~~~~~~~-  119 (488)
                      +++||+|||||+||+++|..|++.|+   +|+|||+++........    -++.++...     ........++..... 
T Consensus         4 ~~~dVvIIGgG~aGl~aA~~l~~~G~---~V~liE~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~gi~~~~~~   80 (478)
T 1v59_A            4 KSHDVVIIGGGPAGYVAAIKAAQLGF---NTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDI   80 (478)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCE
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCC---eEEEEecCCCcCCccceeccHHHHHHHHHHHHHHHHHHHHHhcCcccCCCC
Confidence            35799999999999999999999987   89999996543210000    000000000     000000000000000 


Q ss_pred             -CCC--------------CCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCC--cE------EEeccEEeccCCCCCc
Q 011351          120 -SGG--------------ERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KL------LKYGSLIVATGCTASR  176 (488)
Q Consensus       120 -~~~--------------~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g--~~------i~yd~lVlAtG~~~~~  176 (488)
                       ..+              .....+++++.+++++.++.+. .+....+|.+.+|  +.      +.||+||+|||+.+..
T Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~~~~~v~V~~~~G~~~~~~~~~~i~~d~lViAtGs~p~~  159 (478)
T 1v59_A           81 KINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSF-EDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTP  159 (478)
T ss_dssp             EECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEE-SSSSEEEEECCTTCTTCCSSCEEEEEEEEEECCCEEECC
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE-ccCCeEEEEecCCCcccccccceEEeCEEEECcCCCCCC
Confidence             000              0001235567899999876554 3333345555666  56      9999999999998743


Q ss_pred             CCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHH
Q 011351          177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE  256 (488)
Q Consensus       177 ~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~  256 (488)
                      +   ++....+ ..+.+..+   .......+++++|||+|.+|+|+|..|.++|.+|+++++.+++++ .+++++.+.+.
T Consensus       160 ~---~g~~~~~-~~v~~~~~---~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~  231 (478)
T 1v59_A          160 F---PGIEIDE-EKIVSSTG---ALSLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGA-SMDGEVAKATQ  231 (478)
T ss_dssp             C---TTCCCCS-SSEECHHH---HTTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSS-SSCHHHHHHHH
T ss_pred             C---CCCCCCC-ceEEcHHH---HHhhhccCceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcccc-ccCHHHHHHHH
Confidence            3   3333333 11223233   222223579999999999999999999999999999999999998 58999999999


Q ss_pred             HHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC-----CCcEEEcCEEEEeecCccCCh--hhhhcCCccc-CCCEEeCC
Q 011351          257 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-----DGSTIDADTIVIGIGAKPTVS--PFERVGLNSS-VGGIQVDG  328 (488)
Q Consensus       257 ~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~-----~g~~i~~D~vi~a~G~~p~~~--~~~~~gl~~~-~g~i~vd~  328 (488)
                      +.+++.||++++++++++++..+++....+.+.     +++++++|.||+|+|++|+++  +++++|+..+ +|+|.||+
T Consensus       232 ~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~  311 (478)
T 1v59_A          232 KFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIAGLGAEKIGLEVDKRGRLVIDD  311 (478)
T ss_dssp             HHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEECCTTSCTTTTTCCBCTTSCBCCCT
T ss_pred             HHHHHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcCCCCCCchhcCceeCCCCCEeECc
Confidence            999999999999999999985212333356655     456899999999999999998  7888999876 67799999


Q ss_pred             CCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeEeccccCCCCcceeeEEe
Q 011351          329 QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFF  407 (488)
Q Consensus       329 ~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~  407 (488)
                      ++||+.|+|||+|||+..+.          .+..|..||+.+|++|++... ..|..+|++|....+         +..+
T Consensus       312 ~~~t~~~~IyA~GD~~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~---------~a~v  372 (478)
T 1v59_A          312 QFNSKFPHIKVVGDVTFGPM----------LAHKAEEEGIAAVEMLKTGHGHVNYNNIPSVMYSHPE---------VAWV  372 (478)
T ss_dssp             TSBCSSTTEEECGGGSSSCC----------CHHHHHHHHHHHHHHHHHSCCCCCTTSCCEEECSSSE---------EEEE
T ss_pred             CCccCCCCEEEeeccCCCcc----------cHHHHHHHHHHHHHHHcCCCCCCCCCCCCEEEEcCCc---------EEEE
Confidence            99999999999999998542          455799999999999997432 346667876543222         3334


Q ss_pred             eCCCC-------cEEE--E----------ccCCCcEEEEEEE--CCEEEEEEeecCChHH-hhHHHHHHhcCCCCC-hhh
Q 011351          408 GDNVG-------ETIE--I----------GNFDPKIATFWID--SGKLKGVLVESGSPEE-FQLLPTLARSQPFVD-KAK  464 (488)
Q Consensus       408 g~~~~-------~~~~--~----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~  464 (488)
                      |....       ++..  .          ......+.+++++  +|+|+|+++++..+.+ +..+..+|+++.+++ ...
T Consensus       373 G~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~  452 (478)
T 1v59_A          373 GKTEEQLKEAGIDYKIGKFPFAANSRAKTNQDTEGFVKILIDSKTERILGAHIIGPNAGEMIAEAGLALEYGASAEDVAR  452 (478)
T ss_dssp             ECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHT
T ss_pred             ECCHHHHHHcCCCEEEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhh
Confidence            43321       1111  0          0112457777765  6999999987776655 556677889998885 333


Q ss_pred             -hcCCCcHHHHHHHHHccCCc
Q 011351          465 -LQQASSVEEALEIARAALPV  484 (488)
Q Consensus       465 -~~~~~~~~~~~~~~~~~~~~  484 (488)
                       .+.||+++|++..++.++..
T Consensus       453 ~~~~~Pt~~e~~~~~~~~~~~  473 (478)
T 1v59_A          453 VCHAHPTLSEAFKEANMAAYD  473 (478)
T ss_dssp             SCCCTTCTTHHHHHHHHHHHS
T ss_pred             CCCCCCCHHHHHHHHHHHHhc
Confidence             58889999999999876543

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=3.4e-42  Score=352.36  Aligned_cols=402  Identities=19%  Similarity=0.285  Sum_probs=278.5

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCC----CCcccc-----------------CCCCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA----LTKGYL-----------------FPLDKK  107 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~----l~~~~~-----------------~~~~~~  107 (488)
                      +.++||+|||||+||+++|..|++.|+   +|+|||+++........    .++.++                 ......
T Consensus         4 ~~~~dvvIIGaG~aGl~aA~~l~~~g~---~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~~~~~~   80 (470)
T 1dxl_A            4 SDENDVVIIGGGPGGYVAAIKAAQLGF---KTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNV   80 (470)
T ss_dssp             CCCCCEEEECCSHHHHHHHHHHHHHTC---CEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCE
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCC---eEEEEeCCCCccccccCcCccchHHHHHHHHHHHHHHHHHHhcCcccCCC
Confidence            346899999999999999999999987   89999998654211000    000000                 000000


Q ss_pred             CCCCCCccccc---CCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCC--cEEEeccEEeccCCCCCcCCCCCC
Q 011351          108 PARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIG  182 (488)
Q Consensus       108 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g--~~i~yd~lVlAtG~~~~~~~~~~g  182 (488)
                      ..++..+....   .........+++++.+++++.++.+ .++.....+.+.+|  +.+.||+||+|||+.+.. |+.++
T Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~-~~~~~~~~v~~~~G~~~~i~~d~lIiAtGs~p~~-p~~~g  158 (470)
T 1dxl_A           81 EIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGK-FVSPSEISVDTIEGENTVVKGKHIIIATGSDVKS-LPGVT  158 (470)
T ss_dssp             EECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEE-EEETTEEEECCSSSCCEEEECSEEEECCCEEECC-BTTBC
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEE-EecCCEEEEEeCCCceEEEEcCEEEECCCCCCCC-CCCCC
Confidence            00000000000   0000000123556679999998654 47765555655667  679999999999998764 44455


Q ss_pred             CCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHc
Q 011351          183 GYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN  262 (488)
Q Consensus       183 ~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~  262 (488)
                      .+.+++.+      ..........+++++|||+|.+|+|+|..|.+.|.+|+++++.+++++ .+++++.+.+.+.+++.
T Consensus       159 ~~~~~v~~------~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~-~~~~~~~~~l~~~l~~~  231 (470)
T 1dxl_A          159 IDEKKIVS------STGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVP-TMDAEIRKQFQRSLEKQ  231 (470)
T ss_dssp             CCSSSEEC------HHHHTTCSSCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSST-TSCHHHHHHHHHHHHHS
T ss_pred             CCcccEEe------HHHhhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccc-cccHHHHHHHHHHHHHc
Confidence            43334332      222222223579999999999999999999999999999999999998 48999999999999999


Q ss_pred             CcEEEcCCeEEEEEeCCCCcEEEEEeC---CC--cEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCCCCCC
Q 011351          263 GVKFVKGASIKNLEAGSDGRVAAVKLE---DG--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRM  334 (488)
Q Consensus       263 GV~v~~~~~v~~i~~~~~~~v~~v~l~---~g--~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~  334 (488)
                      ||++++++++++++.++++ + .+.+.   +|  +++++|.||+|+|++|++++  ++++|+..+ +|+|.||+++||+.
T Consensus       232 gv~i~~~~~v~~i~~~~~~-~-~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t~~  309 (470)
T 1dxl_A          232 GMKFKLKTKVVGVDTSGDG-V-KLTVEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGRILVNERFSTNV  309 (470)
T ss_dssp             SCCEECSEEEEEEECSSSS-E-EEEEEESSSCCCEEEEESEEECCCCEEECCTTSCCTTTTCCBCSSSCBCCCTTCBCSS
T ss_pred             CCEEEeCCEEEEEEEcCCe-E-EEEEEecCCCcceEEECCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECcCCccCC
Confidence            9999999999999854333 3 45543   44  67999999999999999987  788888876 57799999999999


Q ss_pred             CCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCC--CCCCCceeEeccccCCCCcceeeEEeeCCCC
Q 011351          335 PGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT--YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG  412 (488)
Q Consensus       335 ~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~~--~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~  412 (488)
                      |+|||+|||+..+.          .+..|..||+.+|.+|++. ..+  |..+|+  ...++..       +..+|....
T Consensus       310 ~~Iya~GD~~~~~~----------~~~~A~~~g~~aa~~i~g~-~~~~~~~~~p~--~~~~~~~-------~a~vG~~e~  369 (470)
T 1dxl_A          310 SGVYAIGDVIPGPM----------LAHKAEEDGVACVEYLAGK-VGHVDYDKVPG--VVYTNPE-------VASVGKTEE  369 (470)
T ss_dssp             TTEEECSTTSSSCC----------CHHHHHHHHHHHHHHHTTS-CCCCCTTSCCE--EECSSSE-------EEEEECCHH
T ss_pred             CCEEEEeccCCCCc----------cHHHHHHHHHHHHHHHcCC-CcCCCCCCCCE--EEECCCc-------eEEEcCCHH
Confidence            99999999997532          4556999999999999974 333  344554  3333221       344554321


Q ss_pred             -------cEEE--E----------ccCCCcEEEEEEE--CCEEEEEEeecCChHHhh-HHHHHHhcCCCCCh--hhhcCC
Q 011351          413 -------ETIE--I----------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQ-LLPTLARSQPFVDK--AKLQQA  468 (488)
Q Consensus       413 -------~~~~--~----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~  468 (488)
                             ++..  .          ......|.+++++  +|+|+|+++++..+.++. .+..+|+++.+++.  ..++.|
T Consensus       370 ~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~~~~~  449 (470)
T 1dxl_A          370 QVKETGVEYRVGKFPFMANSRAKAIDNAEGLVKIIAEKETDKILGVHIMAPNAGELIHEAAIALQYDASSEDIARVCHAH  449 (470)
T ss_dssp             HHHHTTCCEEEEEEEGGGCHHHHHHSCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCS
T ss_pred             HHHhcCCcEEEEEEecccchHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCC
Confidence                   1111  0          0113468888886  699999999777766644 55667888888762  335888


Q ss_pred             CcHHHHHHHHHccCCc
Q 011351          469 SSVEEALEIARAALPV  484 (488)
Q Consensus       469 ~~~~~~~~~~~~~~~~  484 (488)
                      |+++|++..+++++..
T Consensus       450 Pt~~e~~~~~~~~~~~  465 (470)
T 1dxl_A          450 PTMSEAIKEAAMATYD  465 (470)
T ss_dssp             SCTTHHHHHHHHHHHS
T ss_pred             CChHHHHHHHHHHHhc
Confidence            9999999999876544

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=3.5e-42  Score=350.59  Aligned_cols=396  Identities=21%  Similarity=0.277  Sum_probs=274.0

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---CCCC-Ccccc----------------CCCCCCCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---RPAL-TKGYL----------------FPLDKKPAR  110 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~---~~~l-~~~~~----------------~~~~~~~~~  110 (488)
                      ++||+|||||+||++||..|++.|.   +|+|||++. ....   .... ++.++                ........+
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~g~---~V~lie~~~-~gG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~   78 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQLGQ---KVTIVEKGN-LGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTID   78 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEEC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC---eEEEEECCC-CCCcCcCcCchhhHHHHHHHHHHHHHHHHHhcCcccCCCccC
Confidence            4799999999999999999999987   899999973 2100   0000 00000                000000000


Q ss_pred             CCCccccc---CCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCC-cEEEeccEEeccCCCCCcCCCCCCCCCC
Q 011351          111 LPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG-KLLKYGSLIVATGCTASRFPEKIGGYLP  186 (488)
Q Consensus       111 ~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g-~~i~yd~lVlAtG~~~~~~~~~~g~~~~  186 (488)
                      +..+....   .........+++++.+++++.++.+ .++.....+.+.+| +++.||+||+|||+.+.. |+.++.+..
T Consensus        79 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~-~id~~~v~V~~~~G~~~i~~d~lViATGs~p~~-~~~~g~~~~  156 (455)
T 1ebd_A           79 FAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAY-FVDANTVRVVNGDSAQTYTFKNAIIATGSRPIE-LPNFKFSNR  156 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEE-EEETTEEEEEETTEEEEEECSEEEECCCEEECC-BTTBCCCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE-EccCCeEEEEeCCCcEEEEeCEEEEecCCCCCC-CCCCCccce
Confidence            00000000   0000000124556679999987544 47765556777777 679999999999998764 444443221


Q ss_pred             cEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEE
Q 011351          187 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF  266 (488)
Q Consensus       187 gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v  266 (488)
                       +   .+..   ........+++++|||+|.+|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+++.||++
T Consensus       157 -v---~~~~---~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~gv~i  228 (455)
T 1ebd_A          157 -I---LDST---GALNLGEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG-FEKQMAAIIKKRLKKKGVEV  228 (455)
T ss_dssp             -E---ECHH---HHHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHHTTCEE
T ss_pred             -E---ecHH---HHhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccc-cCHHHHHHHHHHHHHCCCEE
Confidence             2   2222   23332345799999999999999999999999999999999999884 79999999999999999999


Q ss_pred             EcCCeEEEEEeCCCCcEEEEEeC---CCcEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCCCCCCCCEEEE
Q 011351          267 VKGASIKNLEAGSDGRVAAVKLE---DGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAI  340 (488)
Q Consensus       267 ~~~~~v~~i~~~~~~~v~~v~l~---~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~  340 (488)
                      +++++|++++.++ +.+ .+.+.   +++++++|.||+|+|++|++++  ++++|+..+ +|+|.||+++||+.|+|||+
T Consensus       229 ~~~~~v~~i~~~~-~~~-~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t~~~~Iya~  306 (455)
T 1ebd_A          229 VTNALAKGAEERE-DGV-TVTYEANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTSVPNIFAI  306 (455)
T ss_dssp             EESEEEEEEEEET-TEE-EEEEEETTEEEEEEESEEEECSCEEESCSSSSTTTTTCCBCTTSCBCCCTTCBCSSTTEEEC
T ss_pred             EeCCEEEEEEEeC-CeE-EEEEEeCCceeEEEcCEEEECcCCCcccCcCChhhcCCccCCCCCEeeCCCcccCCCCEEEE
Confidence            9999999998543 222 34443   4568999999999999999887  678888876 57799999999999999999


Q ss_pred             ceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCC--CCCCCceeEeccccCCCCcceeeEEeeCCCC------
Q 011351          341 GDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT--YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG------  412 (488)
Q Consensus       341 GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~~--~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~------  412 (488)
                      |||+..+.          .+..|..||+.+|.+|++. ..+  +..+|+  ...++..       +..+|....      
T Consensus       307 GD~~~~~~----------~~~~A~~~g~~aa~~i~~~-~~~~~~~~~p~--~~~~~~~-------~a~vG~~e~~a~~~g  366 (455)
T 1ebd_A          307 GDIVPGPA----------LAHKASYEGKVAAEAIAGH-PSAVDYVAIPA--VVFSDPE-------CASVGYFEQQAKDEG  366 (455)
T ss_dssp             GGGSSSCC----------CHHHHHHHHHHHHHHHTSC-CCCCCCSCCCE--EECSSSC-------EEEEECCHHHHHTTT
T ss_pred             eccCCCcc----------cHHHHHHHHHHHHHHHcCC-CccCCCCCCCE--EEECCCc-------eEEEeCCHHHHHhcC
Confidence            99997532          4556999999999999974 333  344554  3333221       334454321      


Q ss_pred             -cEEEE------------ccCCCcEEEEEEE--CCEEEEEEeecCChHHhh-HHHHHHhcCCCCC--hhhhcCCCcHHHH
Q 011351          413 -ETIEI------------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQ-LLPTLARSQPFVD--KAKLQQASSVEEA  474 (488)
Q Consensus       413 -~~~~~------------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~  474 (488)
                       ++...            ......|.+++++  +++|+|+++++.++.++. .+..+|+++.+++  ...++.|||++|+
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~  446 (455)
T 1ebd_A          367 IDVIAAKFPFAANGRALALNDTDGFLKLVVRKEDGVIIGAQIIGPNASDMIAELGLAIEAGMTAEDIALTIHAHPTLGEI  446 (455)
T ss_dssp             CCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHHTCBHHHHHHSCCCTTSSTHH
T ss_pred             CCEEEEEEEcCcchHHhhcCCCcEEEEEEEECCCCEEEEEEEeCCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHHHH
Confidence             11110            0113468888886  699999998777766644 5566688888886  2446889999999


Q ss_pred             HHHHHccC
Q 011351          475 LEIARAAL  482 (488)
Q Consensus       475 ~~~~~~~~  482 (488)
                      +..+++++
T Consensus       447 ~~~~~~~~  454 (455)
T 1ebd_A          447 AMEAAEVA  454 (455)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            99998764

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=100.00  E-value=8.7e-42  Score=348.46  Aligned_cols=400  Identities=16%  Similarity=0.166  Sum_probs=277.9

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC---CC-Ccccc-----------CCCCCCCCCCCCcc
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP---AL-TKGYL-----------FPLDKKPARLPGFH  115 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~---~l-~~~~~-----------~~~~~~~~~~~~~~  115 (488)
                      ++||+|||||+||++||..|++.|.   +|+|||+++.......   .. ++.++           ........++....
T Consensus         4 ~~DVvVIGgG~aGl~aA~~l~~~G~---~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~~~~~~~~~~~   80 (466)
T 3l8k_A            4 KYDVVVIGAGGAGYHGAFRLAKAKY---NVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANVKIPLDFSTVQ   80 (466)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC---CEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCSCCCCCHHHHH
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCC---eEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccCCCCcCHHHHH
Confidence            5799999999999999999999987   8999997765321100   00 00000           00000000000000


Q ss_pred             cccCC--CCC--CCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCcE--EEeccEEeccCCCCCcCCCCCCCCCCcEE
Q 011351          116 TCVGS--GGE--RQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKL--LKYGSLIVATGCTASRFPEKIGGYLPGVH  189 (488)
Q Consensus       116 ~~~~~--~~~--~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~--i~yd~lVlAtG~~~~~~~~~~g~~~~gv~  189 (488)
                      .....  ...  .....++++.+++++.+ ++..+++....|.+.+|+.  +.||+||||||+.|. .|+++|.+  +  
T Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~v~~~~g-~v~~id~~~~~V~~~~g~~~~~~~d~lviAtG~~p~-~p~i~G~~--~--  154 (466)
T 3l8k_A           81 DRKDYVQELRFKQHKRNMSQYETLTFYKG-YVKIKDPTHVIVKTDEGKEIEAETRYMIIASGAETA-KLRLPGVE--Y--  154 (466)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCTTEEEESE-EEEEEETTEEEEEETTSCEEEEEEEEEEECCCEEEC-CCCCTTGG--G--
T ss_pred             HHHHhheeccccchHHHHHHhCCCEEEEe-EEEEecCCeEEEEcCCCcEEEEecCEEEECCCCCcc-CCCCCCcc--c--
Confidence            00000  000  01122334568998876 7888998877888888888  999999999999876 45545532  2  


Q ss_pred             EecCHHHHHHHH-HhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEc
Q 011351          190 YIRDVADADALI-SSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVK  268 (488)
Q Consensus       190 ~~~~~~~~~~~~-~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~  268 (488)
                       +.+..+...+. .....+++++|||+|.+|+|+|..|.++|.+|+++++.+++++..+++++.+.+++.++   |++++
T Consensus       155 -~~t~~~~~~~~~~l~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~---v~i~~  230 (466)
T 3l8k_A          155 -CLTSDDIFGYKTSFRKLPQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITLEDQDIVNTLLSILK---LNIKF  230 (466)
T ss_dssp             -SBCHHHHHSTTCSCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCCHHHHHHHHHHHC---CCEEC
T ss_pred             -eEeHHHHHHHHHHHhhCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCCCCCCHHHHHHHHhcCE---EEEEE
Confidence             33333332111 22235789999999999999999999999999999999999986449999998888776   99999


Q ss_pred             CCeEEEEEeCCCCcEEEEEeC--CCc--EEEcCEEEEeecCccCChh-hhhcCCcccCCCEEeCCCCCCCCCCEEEEcee
Q 011351          269 GASIKNLEAGSDGRVAAVKLE--DGS--TIDADTIVIGIGAKPTVSP-FERVGLNSSVGGIQVDGQFRTRMPGIFAIGDV  343 (488)
Q Consensus       269 ~~~v~~i~~~~~~~v~~v~l~--~g~--~i~~D~vi~a~G~~p~~~~-~~~~gl~~~~g~i~vd~~~~t~~~~Ifa~GD~  343 (488)
                      ++++++++..+++.+ .+.++  +|+  ++++|.|++|+|++|++++ +++.|+..++++|.||+++||+.|||||+|||
T Consensus       231 ~~~v~~i~~~~~~~v-~v~~~~~~G~~~~i~~D~vi~a~G~~p~~~l~l~~~gl~~~~~Gi~vd~~~~t~~~~Iya~GD~  309 (466)
T 3l8k_A          231 NSPVTEVKKIKDDEY-EVIYSTKDGSKKSIFTNSVVLAAGRRPVIPEGAREIGLSISKTGIVVDETMKTNIPNVFATGDA  309 (466)
T ss_dssp             SCCEEEEEEEETTEE-EEEECCTTSCCEEEEESCEEECCCEEECCCTTTGGGTCCBCSSSBCCCTTCBCSSTTEEECGGG
T ss_pred             CCEEEEEEEcCCCcE-EEEEEecCCceEEEEcCEEEECcCCCcccccchhhcCceeCCCCEeECCCccCCCCCEEEEEec
Confidence            999999986432444 46776  676  7999999999999999885 78889987643499999999999999999999


Q ss_pred             cccCCccCCcccccccHHHHHHHHHHHHHHHhcC--CCC--CCCCCCceeEeccccCCCCcceeeEEeeCCCCc------
Q 011351          344 AAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA--QTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE------  413 (488)
Q Consensus       344 a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~--~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~------  413 (488)
                      +..+.          .+..|..||+.+|.||++.  ...  .+..+|+  ....+..       +..+|....+      
T Consensus       310 ~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~--~~~~~~~-------~a~vG~te~~a~~~g~  370 (466)
T 3l8k_A          310 NGLAP----------YYHAAVRMSIAAANNIMANGMPVDYVDVKSIPV--TIYTIPS-------LSYVGILPSKARKMGI  370 (466)
T ss_dssp             TCSCC----------SHHHHHHHHHHHHHHHHTTTSCCCCCCSTTSCE--EECSSSC-------EEEEECCHHHHHHHTC
T ss_pred             CCCCc----------cHhHHHHHHHHHHHHHhCCCCCccccCCCCCcE--EEECCCC-------eEEecCCHHHHHhCCC
Confidence            98632          5567999999999999975  332  3444554  2222221       4455544321      


Q ss_pred             -E--EEEc----------cCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC-h-hhhcCCCcHHHHH
Q 011351          414 -T--IEIG----------NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEEAL  475 (488)
Q Consensus       414 -~--~~~~----------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~~~  475 (488)
                       .  ....          .....+.|+.++  +|+|+|+++++.++.++... ..+|+++.+++ . ..++.|||++|++
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~  450 (466)
T 3l8k_A          371 EIVEAEYNMEEDVSAQIYGQKEGVLKLIFERGSMRLIGAWMIGVHSQYLINELGLAVAYGLNAKQLASFAEQHPSTNEII  450 (466)
T ss_dssp             CEEEEEEEGGGSHHHHHHTCCCCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHCCCCTTSTTHHH
T ss_pred             CEEEEEEEcccChhheecCCCeEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCcCCHHHHhccccCCCChHHHH
Confidence             1  1110          112457888776  49999999988887776544 55678888886 2 4468899999999


Q ss_pred             HHHHccCC
Q 011351          476 EIARAALP  483 (488)
Q Consensus       476 ~~~~~~~~  483 (488)
                      ..+++++.
T Consensus       451 ~~~~~~~~  458 (466)
T 3l8k_A          451 SYTARKVI  458 (466)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99987653

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=100.00  E-value=4.9e-41  Score=342.60  Aligned_cols=395  Identities=20%  Similarity=0.261  Sum_probs=274.1

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---CCCC-Ccccc--------------CCC-CCCCCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---RPAL-TKGYL--------------FPL-DKKPARL  111 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~---~~~l-~~~~~--------------~~~-~~~~~~~  111 (488)
                      ++||+|||||+||++||..|++.|.   +|+|||+++. ...   .... ++.++              +.. .....++
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~~g~---~V~lie~~~~-GG~~~~~g~iP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~   81 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQLGL---KVLAVEAGEV-GGVCLNVGCIPTKALLHAAETLHHLKVAEGFGLKAKPELDL   81 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCT-THHHHHTSHHHHHHHHHHHHHHHHHHHHGGGTEECCCEECH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCC---eEEEEeCCCC-CCCCCCcChHHHHHHHHHHHHHHHHHhHHhcCCCCCCCcCH
Confidence            5899999999999999999999987   8999999862 100   0000 00000              000 0000000


Q ss_pred             CCcccccC---CCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcE
Q 011351          112 PGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGV  188 (488)
Q Consensus       112 ~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv  188 (488)
                      ..+.....   .........++++.+++++.++ +..++.  +++.+. |+++.||+||||||+.|..++.+++.  ..+
T Consensus        82 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~-~~~~~~--~~v~v~-g~~~~~d~lViATGs~p~~p~gi~~~--~~v  155 (464)
T 2eq6_A           82 KKLGGWRDQVVKKLTGGVGTLLKGNGVELLRGF-ARLVGP--KEVEVG-GERYGAKSLILATGSEPLELKGFPFG--EDV  155 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESC-EEEEET--TEEEET-TEEEEEEEEEECCCEEECCBTTBCCS--SSE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeee-EEEccC--CEEEEc-cEEEEeCEEEEcCCCCCCCCCCCCCC--CcE
Confidence            00000000   0000001235567899999875 444553  677776 67899999999999988754323331  122


Q ss_pred             EEecCHHHHHHHHHhhh-cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEE
Q 011351          189 HYIRDVADADALISSLE-KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV  267 (488)
Q Consensus       189 ~~~~~~~~~~~~~~~~~-~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~  267 (488)
                      .   +   .+...+... .+++++|||+|.+|+|+|..|.++|.+|+++++.+++++ .+++++.+.+.+.+++.||+++
T Consensus       156 ~---~---~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~gV~i~  228 (464)
T 2eq6_A          156 W---D---STRALKVEEGLPKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILP-QGDPETAALLRRALEKEGIRVR  228 (464)
T ss_dssp             E---C---HHHHTCGGGCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-TSCHHHHHHHHHHHHHTTCEEE
T ss_pred             E---c---HHHHHhhhhhcCCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCcccc-ccCHHHHHHHHHHHHhcCCEEE
Confidence            2   2   233333223 579999999999999999999999999999999999988 4799999999999999999999


Q ss_pred             cCCeEEEEEeCCCCcEEEEEeC-C--Cc--EEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCCCCCCCCEEE
Q 011351          268 KGASIKNLEAGSDGRVAAVKLE-D--GS--TIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFA  339 (488)
Q Consensus       268 ~~~~v~~i~~~~~~~v~~v~l~-~--g~--~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa  339 (488)
                      +++++++++.++ +.+ .+.+. +  |+  ++++|.||+|+|++|++++  ++..|+..+ +|+|.||+++||+.|+|||
T Consensus       229 ~~~~v~~i~~~~-~~~-~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~Iya  306 (464)
T 2eq6_A          229 TKTKAVGYEKKK-DGL-HVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEGLGLEKAGVKVDERGFIRVNARMETSVPGVYA  306 (464)
T ss_dssp             CSEEEEEEEEET-TEE-EEEEEETTCCSCEEEEESEEEECSCEEESCTTSSHHHHTCCBCTTSCBCCCTTCBCSSTTEEE
T ss_pred             cCCEEEEEEEeC-CEE-EEEEeecCCCceeEEEcCEEEECCCcccCCCCCChhhcCceecCCCCEEECCCcccCCCCEEE
Confidence            999999998643 333 46665 6  76  8999999999999999886  678888875 6779999999999999999


Q ss_pred             EceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeEeccccCCCCcceeeEEeeCCCC------
Q 011351          340 IGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG------  412 (488)
Q Consensus       340 ~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~------  412 (488)
                      +|||+..+.          .+..|..||+.+|.+|++... ..+. +|++  ..++..       +..+|....      
T Consensus       307 ~GD~~~~~~----------l~~~A~~~g~~aa~~i~g~~~~~~~~-~p~~--~~~~~~-------~a~vG~~e~~a~~~g  366 (464)
T 2eq6_A          307 IGDAARPPL----------LAHKAMREGLIAAENAAGKDSAFDYQ-VPSV--VYTSPE-------WAGVGLTEEEAKRAG  366 (464)
T ss_dssp             CGGGTCSSC----------CHHHHHHHHHHHHHHHTTCCCCCCCC-CCEE--ECSSSE-------EEEEECCHHHHHHTT
T ss_pred             EeccCCCcc----------cHHHHHHHHHHHHHHhcCCCcccCCC-CCeE--EECCCC-------EEEEeCCHHHHHhcC
Confidence            999997532          455699999999999997432 1344 6653  222211       344554321      


Q ss_pred             -cEEE--E----------ccCCCcEEEEEEE--CCEEEEEEeecCChHHh-hHHHHHHhcCCCCCh--hhhcCCCcHHHH
Q 011351          413 -ETIE--I----------GNFDPKIATFWID--SGKLKGVLVESGSPEEF-QLLPTLARSQPFVDK--AKLQQASSVEEA  474 (488)
Q Consensus       413 -~~~~--~----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~  474 (488)
                       ++..  .          ......+.+++++  +|+|+|+++++..+.++ ..+..+|+.+.+++.  ..++.|||++|+
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~g~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~  446 (464)
T 2eq6_A          367 YKVKVGKFPLAASGRALTLGGAEGMVKVVGDEETDLLLGVFIVGPQAGELIAEAALALEMGATLTDLALTVHPHPTLSES  446 (464)
T ss_dssp             CCEEEEEEEGGGCHHHHHTSCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCTTHH
T ss_pred             CCEEEEEEEcCcchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHH
Confidence             1111  0          0112458888886  69999999987777665 455667888888862  446889999999


Q ss_pred             HHHHHccCCc
Q 011351          475 LEIARAALPV  484 (488)
Q Consensus       475 ~~~~~~~~~~  484 (488)
                      +..+++++..
T Consensus       447 ~~~~~~~~~~  456 (464)
T 2eq6_A          447 LMEAAEAFHK  456 (464)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHhc
Confidence            9999876544

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=100.00  E-value=5.5e-42  Score=352.40  Aligned_cols=404  Identities=18%  Similarity=0.264  Sum_probs=275.7

Q ss_pred             CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC------CC----------------CCccccCCCC
Q 011351           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER------PA----------------LTKGYLFPLD  105 (488)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~------~~----------------l~~~~~~~~~  105 (488)
                      +++++||+|||||+||++||..|++.|.   +|+|||+++......      |.                +.. +-....
T Consensus        22 ~m~~~dVvVIGgG~aGl~aA~~la~~G~---~V~liEk~~~~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~~-~g~~~~   97 (491)
T 3urh_A           22 SMMAYDLIVIGSGPGGYVCAIKAAQLGM---KVAVVEKRSTYGGTCLNVGCIPSKALLHASEMFHQAQHGLEA-LGVEVA   97 (491)
T ss_dssp             ----CCEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHSSGG-GTEECC
T ss_pred             hcccCCEEEECCCHHHHHHHHHHHHCCC---eEEEEecCCCCCCccccccchhhHHHHHHHHHHHHHHhhHhh-cCcccC
Confidence            3456899999999999999999999987   899999876432100      00                000 000000


Q ss_pred             CCCCCCCCcccc---cCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCC--cEEEeccEEeccCCCCCcCCCC
Q 011351          106 KKPARLPGFHTC---VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEK  180 (488)
Q Consensus       106 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g--~~i~yd~lVlAtG~~~~~~~~~  180 (488)
                      ....++......   ...........++++.+++++.+ .+..+++....+.+.+|  .++.||+||||||+.+..   +
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~---i  173 (491)
T 3urh_A           98 NPKLNLQKMMAHKDATVKSNVDGVSFLFKKNKIDGFQG-TGKVLGQGKVSVTNEKGEEQVLEAKNVVIATGSDVAG---I  173 (491)
T ss_dssp             CCEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-EEEECSSSEEEEECTTSCEEEEECSEEEECCCEECCC---B
T ss_pred             CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEecCCEEEEEeCCCceEEEEeCEEEEccCCCCCC---C
Confidence            000000000000   00000001123456679999886 45556665556666677  579999999999987643   3


Q ss_pred             CCCC--CCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHH
Q 011351          181 IGGY--LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQL  258 (488)
Q Consensus       181 ~g~~--~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~  258 (488)
                      ++..  ..+...+    +..........+++++|||+|.+|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.
T Consensus       174 pg~~~~~~~~~~~----~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~~~  248 (491)
T 3urh_A          174 PGVEVAFDEKTIV----SSTGALALEKVPASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILGG-MDGEVAKQLQRM  248 (491)
T ss_dssp             TTBCCCCCSSSEE----CHHHHTSCSSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSSS-SCHHHHHHHHHH
T ss_pred             CCcccccCCeeEE----ehhHhhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecccccccc-CCHHHHHHHHHH
Confidence            3322  2222222    23333333456899999999999999999999999999999999999985 799999999999


Q ss_pred             HHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCC---C--cEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCC
Q 011351          259 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---G--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQF  330 (488)
Q Consensus       259 l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~---g--~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~  330 (488)
                      +++.||++++++++++++..++ .+ .+.+.+   |  +++++|.||+|+|++|++++  ++..++..+ +|+|.||+++
T Consensus       249 l~~~gV~v~~~~~v~~i~~~~~-~~-~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~  326 (491)
T 3urh_A          249 LTKQGIDFKLGAKVTGAVKSGD-GA-KVTFEPVKGGEATTLDAEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEIDRHF  326 (491)
T ss_dssp             HHHTTCEEECSEEEEEEEEETT-EE-EEEEEETTSCCCEEEEESEEEECCCCEECCTTSCHHHHTCCBCTTSCBCCCTTC
T ss_pred             HHhCCCEEEECCeEEEEEEeCC-EE-EEEEEecCCCceEEEEcCEEEEeeCCccCCCccCchhcCceECCCCCEeECCCC
Confidence            9999999999999999986533 22 355542   4  57999999999999999986  788888876 6779999999


Q ss_pred             CCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC-CCCCCCceeEeccccCCCCcceeeEEeeC
Q 011351          331 RTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH-TYDYLPYFYSRVFEYEGSPRKVWWQFFGD  409 (488)
Q Consensus       331 ~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~-~~~~~p~~~~~~~~~~g~~~~~~~~~~g~  409 (488)
                      +|+.|+|||+|||+..+.          .+..|..+|+.+|++|++.... .+..+|+  ...++..       +..+|.
T Consensus       327 ~t~~~~IyA~GD~~~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~--~~~~~p~-------~a~vGl  387 (491)
T 3urh_A          327 QTSIAGVYAIGDVVRGPM----------LAHKAEDEGVAVAEIIAGQAGHVNYDVIPG--VVYTQPE-------VASVGK  387 (491)
T ss_dssp             BCSSTTEEECGGGSSSCC----------CHHHHHHHHHHHHHHHTTSCCCCCTTCCCE--EECSSSC-------EEEEEC
T ss_pred             CCCCCCEEEEEecCCCcc----------chhHHHHHHHHHHHHHcCCCcccCCCCCCE--EEEccCC-------eEEEeC
Confidence            999999999999996542          5567999999999999974322 3444564  2322221       444554


Q ss_pred             CCC-------cEE--EEc----------cCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC-h-hhh
Q 011351          410 NVG-------ETI--EIG----------NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKL  465 (488)
Q Consensus       410 ~~~-------~~~--~~~----------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~  465 (488)
                      ...       ++.  ...          .....+.|+.++  +++|+|+++++.++.++... ..+|+++.+++ . ..+
T Consensus       388 te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~  467 (491)
T 3urh_A          388 TEEELKAAGVAYKIGKFPFTANGRARAMLQTDGFVKILADKETDRVLGGHIIGFGAGEMIHEIAVLMEFGGSSEDLGRTC  467 (491)
T ss_dssp             CHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSC
T ss_pred             CHHHHHhCCCCEEEEEEecCcchhhhcCCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCc
Confidence            321       111  100          012457788775  59999999988887776655 44578888876 3 335


Q ss_pred             cCCCcHHHHHHHHHccCCcc
Q 011351          466 QQASSVEEALEIARAALPVE  485 (488)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~  485 (488)
                      +.|||++|+++.|++++..+
T Consensus       468 ~~hPt~~e~~~~~~~~~~~~  487 (491)
T 3urh_A          468 HAHPTMSEAVKEAALSTFFK  487 (491)
T ss_dssp             CCSSCTTHHHHHHHHHHHC-
T ss_pred             cCCCChHHHHHHHHHHhhhc
Confidence            88999999999998876543

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=100.00  E-value=2.8e-41  Score=343.06  Aligned_cols=390  Identities=18%  Similarity=0.237  Sum_probs=270.1

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC------CC---------------CCccccCCCCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER------PA---------------LTKGYLFPLDKKP  108 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~------~~---------------l~~~~~~~~~~~~  108 (488)
                      +++||+|||||+||+++|..|++.|.   +|+|||++.. ....      |.               ....+-.......
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~---~V~liE~~~~-GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~~g~~~~~~~   78 (450)
T 1ges_A            3 KHYDYIAIGGGSGGIASINRAAMYGQ---KCALIEAKEL-GGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINK   78 (450)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTC---CEEEEESSCT-THHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEE
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCC---eEEEEcCCCC-CCcccccCccChHHHHHHHHHHHHHHHHHHhcCccCCCCc
Confidence            35799999999999999999999876   8999999742 1000      00               0000000000000


Q ss_pred             CCCCCccccc---CCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCC
Q 011351          109 ARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL  185 (488)
Q Consensus       109 ~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~  185 (488)
                      .++..+....   ...........+++.+++++.+ ++..++.  +++.+ +++++.||+||||||+.|. .|+++|.  
T Consensus        79 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~i~~--~~v~~-~g~~~~~d~lviAtGs~p~-~p~i~g~--  151 (450)
T 1ges_A           79 FNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKG-FARFVDA--KTLEV-NGETITADHILIATGGRPS-HPDIPGV--  151 (450)
T ss_dssp             ECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-CCEEEET--TEEEE-TTEEEEEEEEEECCCEEEC-CCCSTTG--
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEecC--CEEEE-CCEEEEeCEEEECCCCCCC-CCCCCCc--
Confidence            0000000000   0000000112346679999987 4556764  56777 7778999999999999876 3544442  


Q ss_pred             CcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcE
Q 011351          186 PGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK  265 (488)
Q Consensus       186 ~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~  265 (488)
                      +   ...+   .+.+......+++++|||+|.+|+|+|..|.++|.+|+++++.+++++ .+++++.+.+.+.+++.||+
T Consensus       152 ~---~~~~---~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~Gv~  224 (450)
T 1ges_A          152 E---YGID---SDGFFALPALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLP-SFDPMISETLVEVMNAEGPQ  224 (450)
T ss_dssp             G---GSBC---HHHHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-TSCHHHHHHHHHHHHHHSCE
T ss_pred             c---ceec---HHHhhhhhhcCCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhh-hhhHHHHHHHHHHHHHCCCE
Confidence            1   1222   333333334679999999999999999999999999999999999887 48999999999999999999


Q ss_pred             EEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCCCCCCCCEEEEce
Q 011351          266 FVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGD  342 (488)
Q Consensus       266 v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD  342 (488)
                      +++++++++++.++++. ..+.+++|+++++|.||+|+|++|++++  ++++|++.+ +|+|.||++++|+.|||||+||
T Consensus       225 i~~~~~v~~i~~~~~~~-~~v~~~~g~~i~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~~~t~~~~IyA~GD  303 (450)
T 1ges_A          225 LHTNAIPKAVVKNTDGS-LTLELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGD  303 (450)
T ss_dssp             EECSCCEEEEEECTTSC-EEEEETTSCEEEESEEEECSCEEESCTTSCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECSG
T ss_pred             EEeCCEEEEEEEeCCcE-EEEEECCCcEEEcCEEEECCCCCcCCCCCCchhcCceECCCCCEeECCCCccCCCCEEEEec
Confidence            99999999998654343 3678889989999999999999999873  688888876 6779999999999999999999


Q ss_pred             ecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC---CCCCCCCceeEeccccCCCCcceeeEEeeCCCC-------
Q 011351          343 VAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT---HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------  412 (488)
Q Consensus       343 ~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~---~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~-------  412 (488)
                      |+..+.          .+..|..||+.+|.||++...   ..|..+|+.   .|..+      .+..+|....       
T Consensus       304 ~~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~---~~~~~------~~a~vG~~e~~a~~~~g  364 (450)
T 1ges_A          304 NTGAVE----------LTPVAVAAGRRLSERLFNNKPDEHLDYSNIPTV---VFSHP------PIGTVGLTEPQAREQYG  364 (450)
T ss_dssp             GGTSCC----------CHHHHHHHHHHHHHHHHTTCTTCCCCCSSCCEE---ECCSS------CEEEEECCHHHHHHHHC
T ss_pred             cCCCCc----------cHHHHHHHHHHHHHHHcCCCCcccCCCCCCCeE---EECCC------ceEEEeCCHHHHHhcCC
Confidence            987432          566799999999999997432   235556653   22211      1334443211       


Q ss_pred             --cEEEE------------ccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHHHH-HHhcCCCCC-h-hhhcCCCcHHH
Q 011351          413 --ETIEI------------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVD-K-AKLQQASSVEE  473 (488)
Q Consensus       413 --~~~~~------------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~  473 (488)
                        .+...            ......+.++.++  +++|+|+++++.++.++...-. +++.+.+++ . ..++.|||++|
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e  444 (450)
T 1ges_A          365 DDQVKVYKSSFTAMYTAVTTHRQPCRMKLVCVGSEEKIVGIHGIGFGMDEMLQGFAVALKMGATKKDFDNTVAIHPTAAE  444 (450)
T ss_dssp             GGGEEEEEEEEECHHHHTSSSCCEEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGG
T ss_pred             CCcEEEEEEECchhhHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCChHH
Confidence              11110            1112347777775  6999999998777777665544 578888776 2 33688999999


Q ss_pred             HHHH
Q 011351          474 ALEI  477 (488)
Q Consensus       474 ~~~~  477 (488)
                      ++..
T Consensus       445 ~~~~  448 (450)
T 1ges_A          445 EFVT  448 (450)
T ss_dssp             GGGS
T ss_pred             HHHh
Confidence            8764

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=100.00  E-value=1.8e-41  Score=347.98  Aligned_cols=317  Identities=19%  Similarity=0.281  Sum_probs=239.6

Q ss_pred             HHHC-CCeEEeCCcEEEEeCCCcEEEeC---C-----CcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHH
Q 011351          130 YKEK-GIEMIYQDPVTSIDIEKQTLITN---S-----GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADAL  200 (488)
Q Consensus       130 ~~~~-~i~~~~~~~v~~id~~~~~v~~~---~-----g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~  200 (488)
                      +++. +++++.+ .+..++.  ++|.+.   +     ++.+.||+||||||+.|.. |+++|.  +.+.+      ++.+
T Consensus       117 l~~~~gv~~~~g-~~~~i~~--~~v~v~~~~~~~~~~~~~~~~d~lViATGs~p~~-p~i~G~--~~~~~------~~~~  184 (495)
T 2wpf_A          117 FNDTEGLDFFLG-WGSLESK--NVVVVRETADPKSAVKERLQADHILLATGSWPQM-PAIPGI--EHCIS------SNEA  184 (495)
T ss_dssp             HHHCTTEEEEES-EEEEEET--TEEEEESSSSTTSCEEEEEEEEEEEECCCEEECC-CCCTTG--GGCEE------HHHH
T ss_pred             HhcCCCeEEEEe-EEEEeeC--CEEEEeecCCccCCCCeEEEcCEEEEeCCCCcCC-CCCCCc--ccccc------HHHH
Confidence            4566 9999986 5666764  677775   4     6779999999999998863 444443  22222      3333


Q ss_pred             HHhhhcCCeEEEECCCHHHHHHHHHHHhC---CCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 011351          201 ISSLEKAKKVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  277 (488)
Q Consensus       201 ~~~~~~~~~vvVvG~G~~g~e~A~~l~~~---g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~  277 (488)
                      ......+++++|||+|.+|+|+|..|.++   |.+|+++++.+++++. +++++.+.+.+.+++.||+++++++|++++.
T Consensus       185 ~~~~~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~  263 (495)
T 2wpf_A          185 FYLPEPPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRG-FDETIREEVTKQLTANGIEIMTNENPAKVSL  263 (495)
T ss_dssp             TTCSSCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCTT-SCHHHHHHHHHHHHHTTCEEEESCCEEEEEE
T ss_pred             HhhhhcCCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCccccc-cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEE
Confidence            33334578999999999999999999999   9999999999999974 8999999999999999999999999999986


Q ss_pred             CCCCcEEEEEeCCCcEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCcc
Q 011351          278 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRT  354 (488)
Q Consensus       278 ~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~  354 (488)
                      ++++. ..+.+.+|+++++|.||+|+|++|++++  ++++|+..+ +|+|.||+++||+.|||||+|||+..+       
T Consensus       264 ~~~~~-~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~-------  335 (495)
T 2wpf_A          264 NTDGS-KHVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTNVPNIYAIGDITDRL-------  335 (495)
T ss_dssp             CTTSC-EEEEETTSCEEEESEEEECSCEEECCGGGTGGGTTCCBCTTSSBCCCTTCBCSSTTEEECGGGGCSC-------
T ss_pred             cCCce-EEEEECCCcEEEcCEEEECCCCcccccccchhhcCccCCCCCCEEECCCCccCCCCEEEEeccCCCc-------
Confidence            53333 3678889999999999999999999974  678898876 678999999999999999999999642       


Q ss_pred             cccccHHHHHHHHHHHHHHHhcCCC--CCCCCCCceeEeccccCCCCcceeeEEeeCCCCc-------EEE-E-------
Q 011351          355 ARVEHVDHARQSAQHCIKALLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TIE-I-------  417 (488)
Q Consensus       355 ~~~~~~~~A~~~g~~~a~~i~~~~~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~-------~~~-~-------  417 (488)
                         ..+..|..||+.+|.+|++...  ..|..+|+  ...++.+       +..+|....+       +.. .       
T Consensus       336 ---~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~--~~~~~~~-------~a~vGl~e~~a~~~~~~~~v~~~~~~~~~  403 (495)
T 2wpf_A          336 ---MLTPVAINEGAALVDTVFGNKPRKTDHTRVAS--AVFSIPP-------IGTCGLIEEVAAKEFEKVAVYMSSFTPLM  403 (495)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHSSCCCCCCCSSCEE--EECCSSC-------EEEEECCHHHHHHHSSEEEEEEEEECCTH
T ss_pred             ---cCHHHHHHHHHHHHHHhcCCCCCcCCCCCCCE--EEECCCC-------eEEEeCCHHHHHhcCCCEEEEEEecCchh
Confidence               2566799999999999997443  23444553  2222221       4455543211       111 1       


Q ss_pred             ----ccCCCcE-EEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC-h-hhhcCCCcHHHHHHHHH
Q 011351          418 ----GNFDPKI-ATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEEALEIAR  479 (488)
Q Consensus       418 ----~~~~~~~-~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~  479 (488)
                          +.....| .|+.++  +++|+|+++++.++.++... ..+|+.+.+++ . ..++.|||++|++..++
T Consensus       404 ~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~  475 (495)
T 2wpf_A          404 HNISGSKYKKFVAKIVTNHSDGTVLGVHLLGDGAPEIIQAVGVCLRLNAKISDFYNTIGVHPTSAEELCSMR  475 (495)
T ss_dssp             HHHHSCTTCCEEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCSGGGGGSCC
T ss_pred             hhhhcCCCcEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHHHHH
Confidence                1112457 888876  69999999988777665544 55678888876 2 34688999999988765

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=8.8e-42  Score=351.17  Aligned_cols=401  Identities=17%  Similarity=0.231  Sum_probs=263.8

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC--CC---CC--C------------CccccCCCCCCCCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY--ER---PA--L------------TKGYLFPLDKKPARL  111 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~--~~---~~--l------------~~~~~~~~~~~~~~~  111 (488)
                      ++||+|||||+||++||..|++.|.   +|+|||+++...-  .+   |.  +            ...+-.... ...++
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~g~---~V~liE~~~~GG~c~~~gc~P~k~l~~~a~~~~~~~~~~~~g~~~~-~~~~~   77 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAARHNA---KVALVEKSRLGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTK-FSFNL   77 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSTTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCC-CCCCH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC---cEEEEeCCCcCccccccCCcchHHHHHHHHHHHHHHhhHhcCCccC-CccCH
Confidence            4799999999999999999999877   8999999852100  00   00  0            000000000 00000


Q ss_pred             CCcccccC---CCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCC-------------CcEEEeccEEeccCCCCC
Q 011351          112 PGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNS-------------GKLLKYGSLIVATGCTAS  175 (488)
Q Consensus       112 ~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~-------------g~~i~yd~lVlAtG~~~~  175 (488)
                      +.+.....   .........++++.+++++.++ +..++.  +++.+.+             ++++.||+||||||+.|.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~id~--~~v~v~~~~~~~~~~~~~~~~~~~~~d~lViAtGs~p~  154 (500)
T 1onf_A           78 PLLVERRDKYIQRLNNIYRQNLSKDKVDLYEGT-ASFLSE--NRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPV  154 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESC-CCCC----------------------------CBSSEEECCCCCBC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEeeC--CEEEEEeccccccccccCCCceEEEeCEEEECCCCCCC
Confidence            00000000   0000001234467899999874 444543  4555543             567999999999999886


Q ss_pred             cCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHH
Q 011351          176 RFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRY  255 (488)
Q Consensus       176 ~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~  255 (488)
                       .|+++|.  +.+.+      .+.+.+... +++++|||+|.+|+|+|..|.++|.+|+++++.+++++ .+++++.+.+
T Consensus       155 -~p~i~G~--~~~~~------~~~~~~~~~-~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~-~~d~~~~~~l  223 (500)
T 1onf_A          155 -FPPVKGI--ENTIS------SDEFFNIKE-SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILR-KFDESVINVL  223 (500)
T ss_dssp             -CCSCTTG--GGCEE------HHHHTTCCC-CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCT-TSCHHHHHHH
T ss_pred             -CCCCCCC--CcccC------HHHHhccCC-CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCc-ccchhhHHHH
Confidence             3544443  22222      223322222 89999999999999999999999999999999999997 4899999999


Q ss_pred             HHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcE-EEcCEEEEeecCccCCh-h-hhhcCCcccCCCEEeCCCCCC
Q 011351          256 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST-IDADTIVIGIGAKPTVS-P-FERVGLNSSVGGIQVDGQFRT  332 (488)
Q Consensus       256 ~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~-i~~D~vi~a~G~~p~~~-~-~~~~gl~~~~g~i~vd~~~~t  332 (488)
                      .+.|++.||++++++++++++..+++. ..+.+++|++ +++|.||+|+|++|+++ + ++++|+..++|+|.||+++||
T Consensus       224 ~~~l~~~gv~i~~~~~v~~i~~~~~~~-~~v~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~G~i~vd~~~~t  302 (500)
T 1onf_A          224 ENDMKKNNINIVTFADVVEIKKVSDKN-LSIHLSDGRIYEHFDHVIYCVGRSPDTENLKLEKLNVETNNNYIVVDENQRT  302 (500)
T ss_dssp             HHHHHHTTCEEECSCCEEEEEESSTTC-EEEEETTSCEEEEESEEEECCCBCCTTTTSSCTTTTCCBSSSCEEECTTCBC
T ss_pred             HHHHHhCCCEEEECCEEEEEEEcCCce-EEEEECCCcEEEECCEEEECCCCCcCCCCCCchhcCccccCCEEEECCCccc
Confidence            999999999999999999998654343 3678889988 99999999999999986 4 688888887778999999999


Q ss_pred             CCCCEEEEceecccCCcc-----------------------CC-cccccccHHHHHHHHHHHHHHHhcCCCC--CCCCCC
Q 011351          333 RMPGIFAIGDVAAFPLKM-----------------------YD-RTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLP  386 (488)
Q Consensus       333 ~~~~Ifa~GD~a~~~~~~-----------------------~~-~~~~~~~~~~A~~~g~~~a~~i~~~~~~--~~~~~p  386 (488)
                      +.|+|||+|||+..+...                       .+ .......+..|..||+.+|+||++....  .|..+|
T Consensus       303 ~~~~iya~GD~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p  382 (500)
T 1onf_A          303 SVNNIYAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYNVQLTPVAINAGRLLADRLFLKKTRKTNYKLIP  382 (500)
T ss_dssp             SSSSEEECSTTEEEC------------------------------CBCCCCHHHHHHHHHHHHHHHHSCTTCCCCCSSCC
T ss_pred             CCCCEEEEeccccccccccccccccccccccccccccccccccccCCcccchhHHHHHHHHHHHHHhCCCCccCCCCCCC
Confidence            999999999999532100                       00 0022457888999999999999975432  355566


Q ss_pred             ceeEeccccCCCCcceeeEEeeCCCC---------cEEE----------------EccCCCcEEEEEEE--CCEEEEEEe
Q 011351          387 YFYSRVFEYEGSPRKVWWQFFGDNVG---------ETIE----------------IGNFDPKIATFWID--SGKLKGVLV  439 (488)
Q Consensus       387 ~~~~~~~~~~g~~~~~~~~~~g~~~~---------~~~~----------------~~~~~~~~~~~~~~--~~~~~g~~~  439 (488)
                      +.  ..++.+       +..+|....         .+..                .......+.|+.++  +++|+|+++
T Consensus       383 ~~--~~~~~~-------~a~vGl~e~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~  453 (500)
T 1onf_A          383 TV--IFSHPP-------IGTIGLSEEAAIQIYGKENVKIYESKFTNLFFSVYDIEPELKEKTYLKLVCVGKDELIKGLHI  453 (500)
T ss_dssp             EE--ECCSSC-------EEEEECCHHHHHHHTCGGGEEEEEEEECCGGGTTSCSCGGGSCCEEEEEEEETTTTEEEEEEE
T ss_pred             eE--EEcCcc-------eEEEeCCHHHHHhcCCCccEEEEEEECchhhhhhccccccCCCceEEEEEEECCCCEEEEEEE
Confidence            42  222111       333443210         1111                01122457788774  699999998


Q ss_pred             ecCChHHhhHH-HHHHhcCCCCC-h-hhhcCCCcHHHHHHHHH
Q 011351          440 ESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEEALEIAR  479 (488)
Q Consensus       440 ~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~  479 (488)
                      ++.++.++... ..+|+.+.+++ . ..++.|||++|++..++
T Consensus       454 ~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~  496 (500)
T 1onf_A          454 IGLNADEIVQGFAVALKMNATKKDFDETIPIHPTAAEEFLTLQ  496 (500)
T ss_dssp             ESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCSTTHHHHCC
T ss_pred             ECCCHHHHHHHHHHHHHcCCCHHHHhccccCCCCHHHHHHHhc
Confidence            77777776655 44578888776 2 33688999999998764

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=100.00  E-value=1.8e-42  Score=355.22  Aligned_cols=317  Identities=18%  Similarity=0.249  Sum_probs=240.0

Q ss_pred             HHHC-CCeEEeCCcEEEEeCCCcEEEeC-----CC---cEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHH
Q 011351          130 YKEK-GIEMIYQDPVTSIDIEKQTLITN-----SG---KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADAL  200 (488)
Q Consensus       130 ~~~~-~i~~~~~~~v~~id~~~~~v~~~-----~g---~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~  200 (488)
                      +++. +++++.+ .+..++.  +++.+.     +|   +.+.||+||||||+.|.. |+++|.  +.   ..+   .+.+
T Consensus       113 l~~~~gv~~~~g-~~~~i~~--~~v~v~~~~~~~g~~~~~~~~d~lviAtGs~p~~-p~i~g~--~~---~~~---~~~~  180 (490)
T 1fec_A          113 FADTEGLTFHQG-FGALQDN--HTVLVRESADPNSAVLETLDTEYILLATGSWPQH-LGIEGD--DL---CIT---SNEA  180 (490)
T ss_dssp             HHTSTTEEEEES-EEEEEET--TEEEEESSSSTTSCEEEEEEEEEEEECCCEEECC-CCSBTG--GG---CBC---HHHH
T ss_pred             HhcCCCcEEEEe-EEEEeeC--CEEEEEeeccCCCCceEEEEcCEEEEeCCCCCCC-CCCCCc--cc---eec---HHHH
Confidence            4566 9999986 5777775  456553     66   679999999999998863 444443  11   222   3333


Q ss_pred             HHhhhcCCeEEEECCCHHHHHHHHHHHhC---CCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 011351          201 ISSLEKAKKVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  277 (488)
Q Consensus       201 ~~~~~~~~~vvVvG~G~~g~e~A~~l~~~---g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~  277 (488)
                      ......+++++|||+|.+|+|+|..|.++   |.+|+++++.+++++. +++++.+.+.+.+++.||+++++++|++++.
T Consensus       181 ~~~~~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~  259 (490)
T 1fec_A          181 FYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRG-FDSELRKQLTEQLRANGINVRTHENPAKVTK  259 (490)
T ss_dssp             TTCSSCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHHTTEEEEETCCEEEEEE
T ss_pred             hhhhhcCCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcccc-cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEE
Confidence            33334578999999999999999999999   9999999999999974 8999999999999999999999999999986


Q ss_pred             CCCCcEEEEEeCCCcEEEcCEEEEeecCccCCh-h-hhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCcc
Q 011351          278 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS-P-FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRT  354 (488)
Q Consensus       278 ~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~-~-~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~  354 (488)
                      ++++. ..+.+++|+++++|.||+|+|++|+++ + ++++|+..+ +|+|.||+++||+.|+|||+|||+..+       
T Consensus       260 ~~~~~-~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~I~Vd~~~~t~~~~IyA~GD~~~~~-------  331 (490)
T 1fec_A          260 NADGT-RHVVFESGAEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTDRV-------  331 (490)
T ss_dssp             CTTSC-EEEEETTSCEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCTTCBCSSTTEEECGGGGCSC-------
T ss_pred             cCCCE-EEEEECCCcEEEcCEEEEccCCCcCccccCchhcCccCCCCCCEEECCCCccCCCCEEEEeccCCCc-------
Confidence            53333 367888998999999999999999987 4 688899876 678999999999999999999999642       


Q ss_pred             cccccHHHHHHHHHHHHHHHhcCCC--CCCCCCCceeEeccccCCCCcceeeEEeeCCCC-------cEEE-E-------
Q 011351          355 ARVEHVDHARQSAQHCIKALLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETIE-I-------  417 (488)
Q Consensus       355 ~~~~~~~~A~~~g~~~a~~i~~~~~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~-------~~~~-~-------  417 (488)
                         ..+..|..||+.+|.||++...  ..|..+|+  ...++.+       +..+|....       .+.. .       
T Consensus       332 ---~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~--~~~~~~~-------~a~vG~~e~~a~~~~~~~~~~~~~~~~~~  399 (490)
T 1fec_A          332 ---MLTPVAINEGAAFVDTVFANKPRATDHTKVAC--AVFSIPP-------MGVCGYVEEDAAKKYDQVAVYESSFTPLM  399 (490)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHSSCCCCCCCSSCCE--EECCSSC-------EEEEECCHHHHHHHCSEEEEEEEEECCHH
T ss_pred             ---cCHHHHHHHHHHHHHHhcCCCCCcCCCCCccE--EEECCCC-------eEEEeCCHHHHHhcCCCEEEEEeecChhh
Confidence               2567799999999999997443  23445564  2222221       445564421       1111 1       


Q ss_pred             ----ccCCCcEE-EEEEE--CCEEEEEEeecCChHHhhH-HHHHHhcCCCCC-h-hhhcCCCcHHHHHHHHH
Q 011351          418 ----GNFDPKIA-TFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVD-K-AKLQQASSVEEALEIAR  479 (488)
Q Consensus       418 ----~~~~~~~~-~~~~~--~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~  479 (488)
                          ......|. |++++  +++|+|+++++.++.++.. +..+|+++.+++ . ..++.|||++|++..++
T Consensus       400 ~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~  471 (490)
T 1fec_A          400 HNISGSTYKKFMVRIVTNHADGEVLGVHMLGDSSPEIIQSVAICLKMGAKISDFYNTIGVHPTSAEELCSMR  471 (490)
T ss_dssp             HHHHSCTTCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGGSCC
T ss_pred             hhhhcCCCeEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhccccCCCCHHHHHHHHH
Confidence                11234578 88886  6999999998877776554 455678888876 2 33688999999998765

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=100.00  E-value=4.5e-40  Score=337.11  Aligned_cols=402  Identities=18%  Similarity=0.233  Sum_probs=279.2

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccc------------------------c----
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGY------------------------L----  101 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~------------------------~----  101 (488)
                      +++||+|||||+||++||..|++.|+   +|+|||+++..... ..+...+                        +    
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~G~---~V~liEk~~~~gG~-~~~GG~~~~~gciPsk~l~~~~~~~~~~~~~~~~~g   77 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQLGL---KTALIEKYKGKEGK-TALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHG   77 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTC---CEEEEECCBCTTSS-BCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCC---EEEEEeCCCccCCC-CCcCCccccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            46899999999999999999999987   89999998632110 0000000                        0    


Q ss_pred             CCCCCCCCCCCCccccc---CCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCC--cEEEeccEEeccCCCCCc
Q 011351          102 FPLDKKPARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASR  176 (488)
Q Consensus       102 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g--~~i~yd~lVlAtG~~~~~  176 (488)
                      ........++.......   ..........++++.+++++.+ .+..+++....+...+|  +.+.||+||||||+.|..
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~  156 (476)
T 3lad_A           78 ISTGEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEG-HGKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVE  156 (476)
T ss_dssp             EECSCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEES-EEEECSTTCEEEECTTSCEEEECCSCEEECCCEEECC
T ss_pred             cccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEecCCEEEEEcCCCceEEEEcCEEEEcCCCCCCC
Confidence            00000000000000000   0000000113445679999986 55557776667777777  579999999999998764


Q ss_pred             CCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHH
Q 011351          177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE  256 (488)
Q Consensus       177 ~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~  256 (488)
                      +|. ++.+.+.+.+      +..+......+++++|||+|.+|+|+|..|.+.|.+|+++++.+++++ .+++++.+.+.
T Consensus       157 ~~~-~~~~~~~v~~------~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~  228 (476)
T 3lad_A          157 IPP-APVDQDVIVD------STGALDFQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLP-AVDEQVAKEAQ  228 (476)
T ss_dssp             CTT-SCCCSSSEEE------HHHHTSCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST-TSCHHHHHHHH
T ss_pred             CCC-CCCCcccEEe------chhhhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc-ccCHHHHHHHH
Confidence            332 3322334443      333333335679999999999999999999999999999999999998 48999999999


Q ss_pred             HHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCC---cEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCC
Q 011351          257 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQF  330 (488)
Q Consensus       257 ~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g---~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~  330 (488)
                      +.+++.||++++++++++++.+++ .+ .+.+.++   +++++|.||+|+|++|++++  ++..++..+ +|+|.||+++
T Consensus       229 ~~l~~~Gv~v~~~~~v~~i~~~~~-~~-~v~~~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~  306 (476)
T 3lad_A          229 KILTKQGLKILLGARVTGTEVKNK-QV-TVKFVDAEGEKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVDDYC  306 (476)
T ss_dssp             HHHHHTTEEEEETCEEEEEEECSS-CE-EEEEESSSEEEEEEESEEEECSCEEECCTTCCSSCCSCCBCTTSCBCCCTTS
T ss_pred             HHHHhCCCEEEECCEEEEEEEcCC-EE-EEEEEeCCCcEEEECCEEEEeeCCcccCCCCCccccCccccCCCCEeeCCCc
Confidence            999999999999999999986533 33 4566554   67999999999999999874  677888876 5779999999


Q ss_pred             CCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeEeccccCCCCcceeeEEeeC
Q 011351          331 RTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGD  409 (488)
Q Consensus       331 ~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~  409 (488)
                      +|+.|||||+|||+..+.          .+..|..+|+.+|++|++... ..+..+|+.  ..++..       +..+|.
T Consensus       307 ~t~~~~Iya~GD~~~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~--~~~~~~-------~a~vGl  367 (476)
T 3lad_A          307 ATSVPGVYAIGDVVRGAM----------LAHKASEEGVVVAERIAGHKAQMNYDLIPAV--IYTHPE-------IAGVGK  367 (476)
T ss_dssp             BCSSTTEEECGGGSSSCC----------CHHHHHHHHHHHHHHHHHCCCCCCTTCCCEE--ECSSSE-------EEEEEC
T ss_pred             ccCCCCEEEEEccCCCcc----------cHHHHHHHHHHHHHHhcCCCcccCCCCCCEE--EECcCC-------EEEeeC
Confidence            999999999999996432          456699999999999997542 234456642  222211       344554


Q ss_pred             CCC-------cEE--EE--c--------cCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC-h-hhh
Q 011351          410 NVG-------ETI--EI--G--------NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKL  465 (488)
Q Consensus       410 ~~~-------~~~--~~--~--------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~  465 (488)
                      ...       +..  ..  .        .....+.|+.++  +++|+|+++++.++.++... ..+|+++.+++ . ..+
T Consensus       368 te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~  447 (476)
T 3lad_A          368 TEQALKAEGVAINVGVFPFAASGRAMAANDTAGFVKVIADAKTDRVLGVHVIGPSAAELVQQGAIAMEFGTSAEDLGMMV  447 (476)
T ss_dssp             CHHHHHHTTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHTSC
T ss_pred             CHHHHHhcCCCEEEEEEeccccchheecCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCc
Confidence            331       111  11  0        012457787775  59999999988887776655 44578888876 3 335


Q ss_pred             cCCCcHHHHHHHHHccCCcc
Q 011351          466 QQASSVEEALEIARAALPVE  485 (488)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~  485 (488)
                      +.|||++|+++.|++++..+
T Consensus       448 ~~hPt~~e~~~~~~~~~~~~  467 (476)
T 3lad_A          448 FAHPALSEALHEAALAVSGH  467 (476)
T ss_dssp             CCSSCSHHHHHHHHHHHTTC
T ss_pred             cCCCChHHHHHHHHHHHhcc
Confidence            88999999999998876543

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=100.00  E-value=1.9e-40  Score=337.93  Aligned_cols=391  Identities=18%  Similarity=0.286  Sum_probs=270.9

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC------CCC------------C--CccccCCCCCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE------RPA------------L--TKGYLFPLDKKPA  109 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~------~~~------------l--~~~~~~~~~~~~~  109 (488)
                      +++||+|||||+||+++|.+|++.|.   +|+|||++.. ...      .|.            +  ...+-+.......
T Consensus         3 ~~~dVvIIGgG~aGl~aA~~l~~~g~---~V~liE~~~~-GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~~~~~~   78 (463)
T 2r9z_A            3 QHFDLIAIGGGSGGLAVAEKAAAFGK---RVALIESKAL-GGTCVNVGCVPKKVMWYASHLAEAVRDAPGFGVQASGGTL   78 (463)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCT-THHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTBCCC---C
T ss_pred             ccCcEEEECCCHHHHHHHHHHHhCCC---cEEEEcCCCC-CCcCcCcCchhHHHHHHHHHHHHHHhhhhhcCcccCCCCc
Confidence            46899999999999999999999877   8999999742 100      000            0  0000000000000


Q ss_pred             CCCCcccccC---CCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCC
Q 011351          110 RLPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP  186 (488)
Q Consensus       110 ~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~  186 (488)
                      ++..+.....   ..........+++.+++++.+ ++..++.  ++|.+ +++++.||+||||||+.|.. |+++|.  +
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~i~~--~~v~~-~g~~~~~d~lviAtGs~p~~-p~i~G~--~  151 (463)
T 2r9z_A           79 DWPRLVAGRDRYIGAINSFWDGYVERLGITRVDG-HARFVDA--HTIEV-EGQRLSADHIVIATGGRPIV-PRLPGA--E  151 (463)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-CEEEEET--TEEEE-TTEEEEEEEEEECCCEEECC-CSCTTG--G
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEe-EEEEccC--CEEEE-CCEEEEcCEEEECCCCCCCC-CCCCCc--c
Confidence            0000000000   000000122346679999986 5666664  57777 67789999999999998763 444442  1


Q ss_pred             cEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEE
Q 011351          187 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF  266 (488)
Q Consensus       187 gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v  266 (488)
                         ...+   .+.+......+++++|||+|.+|+|+|..|.++|.+|+++++.+++++. +++++.+.+.+.+++.||++
T Consensus       152 ---~~~~---~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~gv~i  224 (463)
T 2r9z_A          152 ---LGIT---SDGFFALQQQPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQ-FDPLLSATLAENMHAQGIET  224 (463)
T ss_dssp             ---GSBC---HHHHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHTTCEE
T ss_pred             ---ceec---HHHHhhhhccCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccccc-cCHHHHHHHHHHHHHCCCEE
Confidence               1222   3333333345789999999999999999999999999999999998874 89999999999999999999


Q ss_pred             EcCCeEEEEEeCCCCcEEEEEeCCCc-EEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCCCCCCCCEEEEce
Q 011351          267 VKGASIKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGD  342 (488)
Q Consensus       267 ~~~~~v~~i~~~~~~~v~~v~l~~g~-~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD  342 (488)
                      ++++++++++.++++  ..+.+++|+ ++++|.||+|+|++|++++  ++++++..+ +|+|.||++++|+.|||||+||
T Consensus       225 ~~~~~v~~i~~~~~~--~~v~~~~G~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD  302 (463)
T 2r9z_A          225 HLEFAVAALERDAQG--TTLVAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMVPTDAYQNTNVPGVYALGD  302 (463)
T ss_dssp             ESSCCEEEEEEETTE--EEEEETTCCEEEEESEEEECSCEEESCTTSCHHHHTCCCCTTSCCCCCTTSBCSSTTEEECGG
T ss_pred             EeCCEEEEEEEeCCe--EEEEEeCCcEEEEcCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECCCCccCCCCEEEEee
Confidence            999999999864333  467888998 8999999999999999873  577888876 6779999999999999999999


Q ss_pred             ecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC---CCCCCCCceeEeccccCCCCcceeeEEeeCCCC-------
Q 011351          343 VAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT---HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------  412 (488)
Q Consensus       343 ~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~---~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~-------  412 (488)
                      |+..+          ..+..|..||+.+|.||++...   ..|..+|+.   .|..+.      +..+|....       
T Consensus       303 ~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~---~~~~~~------~a~vGl~e~~a~~~~g  363 (463)
T 2r9z_A          303 ITGRD----------QLTPVAIAAGRRLAERLFDGQSERKLDYDNIPTV---VFAHPP------LSKVGLSEPEARERLG  363 (463)
T ss_dssp             GGTSC----------CCHHHHHHHHHHHHHHHHSCCTTCCCCCSSCCEE---ECCSSC------EEEEECCHHHHHHHHC
T ss_pred             cCCCc----------ccHHHHHHHHHHHHHHHcCCCCcccCCCCCCCEE---EeCCCC------eEEEcCCHHHHHhcCC
Confidence            98642          2566799999999999997542   235556653   222111      333443210       


Q ss_pred             -cEEEE------------ccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC-h-hhhcCCCcHHHH
Q 011351          413 -ETIEI------------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEEA  474 (488)
Q Consensus       413 -~~~~~------------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~~  474 (488)
                       .+...            ......+.+++++  +++|+|+++++.++.++... ..+++.+.+++ . ..++.|||++|+
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~  443 (463)
T 2r9z_A          364 DVLTVYETSFTPMRYALNEHGPKTAMKLVCAGPEQRVVGVHVIGDGADEMLQGFAVAVKMGATKADFDNTVAIHPGSAEE  443 (463)
T ss_dssp             SCEEEEEEEECCGGGTTSSSCCCEEEEEEEETTTTEEEEEEEESTTGGGTSHHHHHHHHTTCBHHHHHTSCCCSSSSGGG
T ss_pred             CCEEEEEEEcccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHHH
Confidence             11110            1112457788775  69999999877777775555 44578888776 2 336889999999


Q ss_pred             HHHHH
Q 011351          475 LEIAR  479 (488)
Q Consensus       475 ~~~~~  479 (488)
                      +..++
T Consensus       444 ~~~~~  448 (463)
T 2r9z_A          444 LVTLK  448 (463)
T ss_dssp             GGCCC
T ss_pred             HHHHH
Confidence            88754

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=100.00  E-value=2.9e-41  Score=346.04  Aligned_cols=396  Identities=19%  Similarity=0.220  Sum_probs=271.9

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC--C---CC--------------CCCccccCCCCCCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY--E---RP--------------ALTKGYLFPLDKKPA  109 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~--~---~~--------------~l~~~~~~~~~~~~~  109 (488)
                      +.++||+|||||+||++||..|++.|.   +|+|||++....-  .   .|              .....+-........
T Consensus        18 ~~~~dVvIIGgG~aGl~aA~~la~~G~---~V~liE~~~~GG~~~~~gc~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~   94 (478)
T 3dk9_A           18 VASYDYLVIGGGSGGLASARRAAELGA---RAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKF   94 (478)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTSCCCCCCC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCC---eEEEEecCCCCCcccccCccchHHHHHHHHHHHHHHHHHhcCccCCCCcc
Confidence            346899999999999999999999987   8999997742100  0   00              000000000000000


Q ss_pred             CCCCccccc---CCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCC--CCCCCC
Q 011351          110 RLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGGY  184 (488)
Q Consensus       110 ~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~--~~~g~~  184 (488)
                      .+.......   ...........++..+++++.+ .+..++.....+. .+++++.||+||||||+.+..++  +++|..
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~~~~~~~~v~-~~g~~~~~d~lviAtG~~p~~p~~~~i~G~~  172 (478)
T 3dk9_A           95 NWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRG-HAAFTSDPKPTIE-VSGKKYTAPHILIATGGMPSTPHESQIPGAS  172 (478)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-CEEECSCSSCEEE-ETTEEEECSCEEECCCEEECCCCTTTSTTGG
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEeeCCeEEEE-ECCEEEEeeEEEEccCCCCCCCCcCCCCCCc
Confidence            000000000   0000000122345679999886 5666777666777 46778999999999999876431  434422


Q ss_pred             CCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCc
Q 011351          185 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGV  264 (488)
Q Consensus       185 ~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV  264 (488)
                           ...   +++.+......+++++|||+|.+|+|+|..|.++|.+|+++++.+++++ .+++++.+.+.+.+++.||
T Consensus       173 -----~~~---~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-~~d~~~~~~~~~~l~~~gv  243 (478)
T 3dk9_A          173 -----LGI---TSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLR-SFDSMISTNCTEELENAGV  243 (478)
T ss_dssp             -----GSB---CHHHHTTCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT-TSCHHHHHHHHHHHHHTTC
T ss_pred             -----eeE---chHHhhchhhcCccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCcccc-ccCHHHHHHHHHHHHHCCC
Confidence                 111   2344444344579999999999999999999999999999999999996 4899999999999999999


Q ss_pred             EEEcCCeEEEEEeCCCCcEEEEEeCC---C----cEEEcCEEEEeecCccCCh-h-hhhcCCccc-CCCEEeCCCCCCCC
Q 011351          265 KFVKGASIKNLEAGSDGRVAAVKLED---G----STIDADTIVIGIGAKPTVS-P-FERVGLNSS-VGGIQVDGQFRTRM  334 (488)
Q Consensus       265 ~v~~~~~v~~i~~~~~~~v~~v~l~~---g----~~i~~D~vi~a~G~~p~~~-~-~~~~gl~~~-~g~i~vd~~~~t~~  334 (488)
                      ++++++.+++++..+++....+.+.+   |    +++++|.|++|+|++|+++ + ++.+|++.+ +|+|.||++++|+.
T Consensus       244 ~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~  323 (478)
T 3dk9_A          244 EVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNV  323 (478)
T ss_dssp             EEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTCCBCCCTTCBCSS
T ss_pred             EEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccCCCCCCchhcCCeeCCCCCEeeCCCcccCC
Confidence            99999999999865555233566665   2    5799999999999999987 4 688888875 67899999999999


Q ss_pred             CCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCC-C--CCCCCCCceeEeccccCCCCcceeeEEeeCCC
Q 011351          335 PGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ-T--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNV  411 (488)
Q Consensus       335 ~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~-~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~  411 (488)
                      |||||+|||+..+.          .+..|..+|+.+|.+|++.. .  ..+..+|+.   .|..+-      +..+|...
T Consensus       324 ~~IyA~GD~~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~---~~~~p~------~a~vGlte  384 (478)
T 3dk9_A          324 KGIYAVGDVCGKAL----------LTPVAIAAGRKLAHRLFEYKEDSKLDYNNIPTV---VFSHPP------IGTVGLTE  384 (478)
T ss_dssp             TTEEECGGGGCSSC----------CHHHHHHHHHHHHHHHHSCCTTCCCCCTTCCEE---ECCSSC------EEEEECCH
T ss_pred             CCEEEEEecCCCCc----------cHhHHHHHHHHHHHHHcCCCCcccCCCCCCCeE---EECCCc------eEEeeCCH
Confidence            99999999995432          45678999999999999752 2  245556642   232211      33444432


Q ss_pred             C---------cEEEE----c--------cCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC-h-hhh
Q 011351          412 G---------ETIEI----G--------NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKL  465 (488)
Q Consensus       412 ~---------~~~~~----~--------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~  465 (488)
                      .         .+...    .        +....+.|+.++  +++|+|+++++.++.++... ..+|+++.+++ . ..+
T Consensus       385 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~  464 (478)
T 3dk9_A          385 DEAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKVVGIHMQGLGCDEMLQGFAVAVKMGATKADFDNTV  464 (478)
T ss_dssp             HHHHHHHCGGGEEEEEEEECCGGGGGCSSCCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSC
T ss_pred             HHHHhhCCCccEEEEEeecCcchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcc
Confidence            1         01110    0        112357787764  59999999988877776655 44578888876 2 446


Q ss_pred             cCCCcHHHHHHH
Q 011351          466 QQASSVEEALEI  477 (488)
Q Consensus       466 ~~~~~~~~~~~~  477 (488)
                      +.|||++|++..
T Consensus       465 ~~hPt~~e~~~~  476 (478)
T 3dk9_A          465 AIHPTSSEELVT  476 (478)
T ss_dssp             CCSSSSGGGGGS
T ss_pred             cCCCChHHHHHh
Confidence            899999998764

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=100.00  E-value=2.1e-40  Score=337.49  Aligned_cols=397  Identities=19%  Similarity=0.251  Sum_probs=271.7

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC----CCCccccC----------CC-----CCCCCCCC
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP----ALTKGYLF----------PL-----DKKPARLP  112 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~----~l~~~~~~----------~~-----~~~~~~~~  112 (488)
                      +||+|||||+||++||..|++.|.   +|+|||+++.......    .-++.++.          ..     .....++.
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~---~V~lie~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~g~~~~~~~~~~~   78 (455)
T 2yqu_A            2 YDLLVIGAGPGGYVAAIRAAQLGM---KVGVVEKEKALGGTCLRVGCIPSKALLETTERIYEAKKGLLGAKVKGVELDLP   78 (455)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHCCTTEEECCEEECHH
T ss_pred             CCEEEECCChhHHHHHHHHHHCCC---eEEEEeCCCCCCCccceecchhHHHHHHHHHHHHHHhhhcCCcccCCCccCHH
Confidence            689999999999999999999987   8999999864321000    00000000          00     00000000


Q ss_pred             Cccccc---CCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeC-CCcEEEeccEEeccCCCCCcCCCCCCCCCCcE
Q 011351          113 GFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITN-SGKLLKYGSLIVATGCTASRFPEKIGGYLPGV  188 (488)
Q Consensus       113 ~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~-~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv  188 (488)
                      .+....   .........+++++.+++++.+. +..+++  +.+.+. +|+++.||+||+|||+.|.. |+.++.+..++
T Consensus        79 ~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~-~~~i~~--~~~~v~~~g~~~~~d~lviAtG~~p~~-~~~~g~~~~~v  154 (455)
T 2yqu_A           79 ALMAHKDKVVQANTQGVEFLFKKNGIARHQGT-ARFLSE--RKVLVEETGEELEARYILIATGSAPLI-PPWAQVDYERV  154 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCEEEESC-EEESSS--SEEEETTTCCEEEEEEEEECCCEEECC-CTTBCCCSSSE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEecC--CeEEEeeCCEEEEecEEEECCCCCCCC-CCCCCCCcCcE
Confidence            000000   00000001245566799999875 434443  444443 56789999999999998764 44445333333


Q ss_pred             EEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEc
Q 011351          189 HYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVK  268 (488)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~  268 (488)
                      .+      .....+....+++++|||+|.+|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+++.||++++
T Consensus       155 ~~------~~~~~~~~~~~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~~-~~~~~~~~l~~~l~~~Gv~i~~  227 (455)
T 2yqu_A          155 VT------STEALSFPEVPKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILPT-MDLEVSRAAERVFKKQGLTIRT  227 (455)
T ss_dssp             EC------HHHHTCCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHHHHTCEEEC
T ss_pred             ec------hHHhhccccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCccccc-cCHHHHHHHHHHHHHCCCEEEE
Confidence            32      2223222235789999999999999999999999999999999998874 7899999999999999999999


Q ss_pred             CCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecc
Q 011351          269 GASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAA  345 (488)
Q Consensus       269 ~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~  345 (488)
                      +++|++++.++ +. ..+.+++|+++++|.||+|+|.+|+.++  ++..++..+ +|++.||++++|+.|+|||+|||+.
T Consensus       228 ~~~V~~i~~~~-~~-v~v~~~~g~~i~~D~vv~A~G~~p~~~~l~~~~~g~~~~~~g~i~vd~~~~t~~~~iya~GD~~~  305 (455)
T 2yqu_A          228 GVRVTAVVPEA-KG-ARVELEGGEVLEADRVLVAVGRRPYTEGLSLENAGLSTDERGRIPVDEHLRTRVPHIYAIGDVVR  305 (455)
T ss_dssp             SCCEEEEEEET-TE-EEEEETTSCEEEESEEEECSCEEECCTTCCGGGGTCCCCTTSCCCCCTTSBCSSTTEEECGGGSS
T ss_pred             CCEEEEEEEeC-CE-EEEEECCCeEEEcCEEEECcCCCcCCCCCChhhcCCccCCCCcEeECCCcccCCCCEEEEecCCC
Confidence            99999998643 33 3567778889999999999999999887  678888865 5779999999999999999999997


Q ss_pred             cCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCC--CCCCceeEeccccCCCCcceeeEEeeCCCC-------cEEE
Q 011351          346 FPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTY--DYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETIE  416 (488)
Q Consensus       346 ~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~~~--~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~-------~~~~  416 (488)
                      .+.          .+..|..||+.+|.+|++.. ..+  ..+|+  ...++..       +..+|....       ++..
T Consensus       306 ~~~----------~~~~A~~~g~~aa~~i~~~~-~~~~~~~~p~--~~~~~~~-------~a~~G~~~~~a~~~g~~~~~  365 (455)
T 2yqu_A          306 GPM----------LAHKASEEGIAAVEHMVRGF-GHVDYQAIPS--VVYTHPE-------IAAVGYTEEELKAQGIPYKV  365 (455)
T ss_dssp             SCC----------CHHHHHHHHHHHHHHHHHSC-CCCCGGGCCE--EECSSSE-------EEEEECCHHHHHHHTCCEEE
T ss_pred             Ccc----------CHHHHHHhHHHHHHHHcCCC-ccCCCCCCCE--EEEcCCc-------eEEEECCHHHHHHcCCCEEE
Confidence            532          45569999999999999743 333  33453  2222211       333443211       1111


Q ss_pred             --E----------ccCCCcEEEEEEE--CCEEEEEEeecCChHHhh-HHHHHHhcCCCCCh--hhhcCCCcHHHHHHHHH
Q 011351          417 --I----------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQ-LLPTLARSQPFVDK--AKLQQASSVEEALEIAR  479 (488)
Q Consensus       417 --~----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  479 (488)
                        .          ......+.+++++  +++|+|+++++..+.++. .+..+++++.+++.  ...+.||+++|++..++
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~~~~~~~~~Pt~~e~~~~~~  445 (455)
T 2yqu_A          366 GKFPYSASGRARAMGETEGFIKVLAHAKTDRILGVHGIGARVGDVLAEAALALFFKASAEDLGRAPHAHPSLSEILKEAA  445 (455)
T ss_dssp             EEEEGGGCHHHHHHTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCTHHHHHHHH
T ss_pred             EEEEcccchHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHHHHHHHHH
Confidence              0          0112457888885  799999998766665544 44556788888873  34688999999999998


Q ss_pred             ccCCc
Q 011351          480 AALPV  484 (488)
Q Consensus       480 ~~~~~  484 (488)
                      +++..
T Consensus       446 ~~~~~  450 (455)
T 2yqu_A          446 LAAWE  450 (455)
T ss_dssp             HHHHS
T ss_pred             HHHhc
Confidence            76543

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=100.00  E-value=5.4e-41  Score=342.49  Aligned_cols=395  Identities=19%  Similarity=0.270  Sum_probs=276.3

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC------CC--------------CCccccCCCCCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER------PA--------------LTKGYLFPLDKKPA  109 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~------~~--------------l~~~~~~~~~~~~~  109 (488)
                      .++||+|||||++|+++|..|++.|+   +|+|||++.. ....      |.              ....+.........
T Consensus         4 ~~~DVvVIGaG~aGl~aA~~la~~G~---~V~liEk~~~-GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~g~~~~~~~~   79 (463)
T 4dna_A            4 FDYDLFVIGGGSGGVRSGRLAAALGK---KVAIAEEFRY-GGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTVGESRF   79 (463)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTTTC---CEEEEESSCT-THHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEECCCEE
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhCCC---EEEEEeCCCC-CCcccccCchhhHHHHHHHHHHHHHHHHHhcCcccCCCCc
Confidence            46899999999999999999999987   8999999431 1000      00              00000000000000


Q ss_pred             CCCCccccc---CCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEe-CCCcEEEeccEEeccCCCCCcCCCCCCCCC
Q 011351          110 RLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLIT-NSGKLLKYGSLIVATGCTASRFPEKIGGYL  185 (488)
Q Consensus       110 ~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~-~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~  185 (488)
                      ++.......   ..........+++..+++++.+ .+..++  .+.+.+ .+++.+.||+||+|||+.+...|.++|.+ 
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~i~--~~~v~~~~~~~~~~~d~lviAtG~~p~~~p~i~G~~-  155 (463)
T 4dna_A           80 DWAKLVAAKEQEIARLEGLYRKGLANAGAEILDT-RAELAG--PNTVKLLASGKTVTAERIVIAVGGHPSPHDALPGHE-  155 (463)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEES-CEEESS--SSEEEETTTTEEEEEEEEEECCCEEECCCTTSTTGG-
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEee--CCEEEEecCCeEEEeCEEEEecCCCcccCCCCCCcc-
Confidence            000000000   0000001123345569999886 665554  467777 57788999999999999876234444422 


Q ss_pred             CcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcE
Q 011351          186 PGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK  265 (488)
Q Consensus       186 ~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~  265 (488)
                          ...   +.+.+......+++++|||+|.+|+|+|..+.+.|.+|+++++.+++++ .+++++.+.+.+.+++.||+
T Consensus       156 ----~~~---~~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l~-~~~~~~~~~l~~~l~~~Gv~  227 (463)
T 4dna_A          156 ----LCI---TSNEAFDLPALPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILS-RFDQDMRRGLHAAMEEKGIR  227 (463)
T ss_dssp             ----GCB---CHHHHTTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-TSCHHHHHHHHHHHHHTTCE
T ss_pred             ----ccc---cHHHHhhhhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc-ccCHHHHHHHHHHHHHCCCE
Confidence                122   2333433334689999999999999999999999999999999999886 48999999999999999999


Q ss_pred             EEcCCeEEEEEeCCCCcEEEEE-eCCCcEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCCCCCCCCEEEEc
Q 011351          266 FVKGASIKNLEAGSDGRVAAVK-LEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIG  341 (488)
Q Consensus       266 v~~~~~v~~i~~~~~~~v~~v~-l~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~G  341 (488)
                      +++++.|++++..+++. ..|. +++|+ +++|.||+|+|++|++.+  +++.|+..+ +|+|.||++++|+.|||||+|
T Consensus       228 i~~~~~v~~i~~~~~~~-~~v~~~~~g~-i~aD~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~iya~G  305 (463)
T 4dna_A          228 ILCEDIIQSVSADADGR-RVATTMKHGE-IVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVDAFSRTSTPGIYALG  305 (463)
T ss_dssp             EECSCCEEEEEECTTSC-EEEEESSSCE-EEESEEEECSCEEESCTTSSTGGGTCCBCTTSCBCCCTTCBCSSTTEEECS
T ss_pred             EECCCEEEEEEEcCCCE-EEEEEcCCCe-EEeCEEEEeeCcccCCCCCCccccCceECCCCCEeECcCCCCCCCCEEEEE
Confidence            99999999998754443 3677 88998 999999999999999887  788898876 578999999999999999999


Q ss_pred             eecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCCCCceeEeccccCCCCcceeeEEeeCCCCc------
Q 011351          342 DVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE------  413 (488)
Q Consensus       342 D~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~------  413 (488)
                      ||+..+.          .+..|..||+.+|+||++....  .+..+|+.   .|..+-      +..+|....+      
T Consensus       306 D~~~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~---~~~~p~------~a~vG~te~~a~~~~~  366 (463)
T 4dna_A          306 DVTDRVQ----------LTPVAIHEAMCFIETEYKNNPTSPDHDLIATA---VFSQPE------IGTVGITEEEAARKFQ  366 (463)
T ss_dssp             GGGSSCC----------CHHHHHHHHHHHHHHHHSSCCCCCCCSCCCEE---ECSSSC------EEEEECCHHHHHHHSS
T ss_pred             ecCCCCC----------ChHHHHHHHHHHHHHHcCCCCcccCCCCCCEE---EECCCC------eEEecCCHHHHHHcCC
Confidence            9998432          4567999999999999975433  34455542   233221      4445544321      


Q ss_pred             -EE-EEc-----------cCCCcEEEEEEE--CCEEEEEEeecCChHHhhHHH-HHHhcCCCCC-h-hhhcCCCcHHHHH
Q 011351          414 -TI-EIG-----------NFDPKIATFWID--SGKLKGVLVESGSPEEFQLLP-TLARSQPFVD-K-AKLQQASSVEEAL  475 (488)
Q Consensus       414 -~~-~~~-----------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~-~-~~~~~~~~~~~~~  475 (488)
                       .. ...           +....+.|+.++  +++|+|+++++.++.++.... .+|+.+.+++ . ..++.|||++|++
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~  446 (463)
T 4dna_A          367 EIEVYRAEFRPMKATLSGRKEKTIMKLVVNAADRKVVGAHILGHDAGEMAQLLGISLRAGCTKDDFDRTMAVHPTAAEEL  446 (463)
T ss_dssp             EEEEEEEEECCTTHHHHCCCCCEEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCSGGGG
T ss_pred             CeEEEEEeccccchhhcCCCceEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHHHHH
Confidence             11 010           012357788775  599999999888887766554 4578888876 2 3469999999999


Q ss_pred             HHHHcc
Q 011351          476 EIARAA  481 (488)
Q Consensus       476 ~~~~~~  481 (488)
                      .+++..
T Consensus       447 ~~~~~~  452 (463)
T 4dna_A          447 VTMYQP  452 (463)
T ss_dssp             TCCCSC
T ss_pred             HHHhhh
Confidence            988744

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=3.4e-40  Score=335.77  Aligned_cols=395  Identities=16%  Similarity=0.225  Sum_probs=269.7

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---CCCC-Ccccc-----------------CCCC--C
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---RPAL-TKGYL-----------------FPLD--K  106 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~---~~~l-~~~~~-----------------~~~~--~  106 (488)
                      .++||+|||||+||++||..|++.|.   +|+|||++.. ...   +... ++.++                 +...  .
T Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~---~V~lie~~~~-GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~~g~~~~~   79 (458)
T 1lvl_A            4 IQTTLLIIGGGPGGYVAAIRAGQLGI---PTVLVEGQAL-GGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVAS   79 (458)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTC---CEEEECSSCT-THHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCC---EEEEEccCCC-CCcCCCcCcHhHHHHHHHHHHHHHHhhcccccccCcccCC
Confidence            35899999999999999999999987   8999999432 100   0000 00000                 0000  0


Q ss_pred             CCCCCCCccccc---CCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCC
Q 011351          107 KPARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGG  183 (488)
Q Consensus       107 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~  183 (488)
                      ...++..+....   .........+++++.+++++.++.+ .++  .+++.+++ +++.||+||||||+.|..+|.++. 
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~~--~~~v~v~~-~~~~~d~lviATGs~p~~~~~~~~-  154 (458)
T 1lvl_A           80 PRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAK-VLD--GKQVEVDG-QRIQCEHLLLATGSSSVELPMLPL-  154 (458)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEE-EEE--TTEEEETT-EEEECSEEEECCCEEECCBTTBCC-
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEE-Ecc--CCEEEEee-EEEEeCEEEEeCCCCCCCCCCCCc-
Confidence            000000000000   0000000124567789999987544 354  46788866 779999999999998864432331 


Q ss_pred             CCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcC
Q 011351          184 YLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNG  263 (488)
Q Consensus       184 ~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~G  263 (488)
                      + ..+.   +   ..........+++++|||+|.+|+|+|..|++.|.+|+++++.+++++ .+++++.+.+.+.+++.|
T Consensus       155 ~-~~v~---~---~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~g  226 (458)
T 1lvl_A          155 G-GPVI---S---STEALAPKALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILP-TYDSELTAPVAESLKKLG  226 (458)
T ss_dssp             B-TTEE---C---HHHHTCCSSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSST-TSCHHHHHHHHHHHHHHT
T ss_pred             c-CcEe---c---HHHHhhhhccCCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCcccc-ccCHHHHHHHHHHHHHCC
Confidence            1 1222   2   223322233578999999999999999999999999999999999998 589999999999999999


Q ss_pred             cEEEcCCeEEEEEeCCCCcEEEEEeCCC--cEEEcCEEEEeecCccCChh--hhhcCCcccCCCEEeCCCCCCCCCCEEE
Q 011351          264 VKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSP--FERVGLNSSVGGIQVDGQFRTRMPGIFA  339 (488)
Q Consensus       264 V~v~~~~~v~~i~~~~~~~v~~v~l~~g--~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~g~i~vd~~~~t~~~~Ifa  339 (488)
                      |++++++++++++.   +.+ .+...+|  +++++|.||+|+|++|+.++  ++.+|+..++++|.||++++|+.|+|||
T Consensus       227 v~i~~~~~v~~i~~---~~v-~v~~~~G~~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~~i~vd~~~~t~~~~Iya  302 (458)
T 1lvl_A          227 IALHLGHSVEGYEN---GCL-LANDGKGGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGAAIAIDERCQTSMHNVWA  302 (458)
T ss_dssp             CEEETTCEEEEEET---TEE-EEECSSSCCCEECCSCEEECCCEEECCSSSSGGGSCCCEETTEECCCTTCBCSSTTEEE
T ss_pred             CEEEECCEEEEEEe---CCE-EEEECCCceEEEECCEEEECcCCCcCCCCCCcHhcCCcccCCEEeECCCCcCCCCCEEE
Confidence            99999999999984   223 3444456  68999999999999999886  5788888753389999999999999999


Q ss_pred             EceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCC--CCCCCceeEeccccCCCCcceeeEEeeCCCC-----
Q 011351          340 IGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT--YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-----  412 (488)
Q Consensus       340 ~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~~--~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~-----  412 (488)
                      +|||+..+.          .+..|..||+.+|.+|++.. .+  +..+|+  ...++..       +..+|....     
T Consensus       303 ~GD~~~~~~----------~~~~A~~~g~~aa~~i~g~~-~~~~~~~~p~--~~~~~p~-------~a~vG~~e~~a~~~  362 (458)
T 1lvl_A          303 IGDVAGEPM----------LAHRAMAQGEMVAEIIAGKA-RRFEPAAIAA--VCFTDPE-------VVVVGKTPEQASQQ  362 (458)
T ss_dssp             CGGGGCSSC----------CHHHHHHHHHHHHHHHTTCC-CCCCCSCCCE--EECSSSE-------EEEEECCHHHHHHT
T ss_pred             eeccCCCcc----------cHHHHHHHHHHHHHHhcCCC-ccCCCCCCCE--EEECCCC-------eEEEeCCHHHHHHc
Confidence            999998542          45679999999999999743 33  344453  2222211       233333211     


Q ss_pred             --cEEE--E----------ccCCCcEEEEEEE--CCEEEEEEeecCChHHh-hHHHHHHhcCCCCCh--hhhcCCCcHHH
Q 011351          413 --ETIE--I----------GNFDPKIATFWID--SGKLKGVLVESGSPEEF-QLLPTLARSQPFVDK--AKLQQASSVEE  473 (488)
Q Consensus       413 --~~~~--~----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~  473 (488)
                        ++..  .          ......+.+++++  +++|+|+++++..+.++ ..+..+|+++.+++.  ..++.|||++|
T Consensus       363 g~~~~~~~~~~~~~~~~~~~~~~~g~~kl~~d~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e  442 (458)
T 1lvl_A          363 GLDCIVAQFPFAANGRAMSLESKSGFVRVVARRDNHLILGWQAVGVAVSELSTAFAQSLEMGACLEDVAGTIHAHPTLGE  442 (458)
T ss_dssp             TCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTGGGHHHHHHHHHHHTCBHHHHHTSCCCTTCTTH
T ss_pred             CCCEEEEEEECccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCCHHH
Confidence              1111  0          0112458888884  69999999877766554 455666888888763  33588999999


Q ss_pred             HHHHHHccCCcc
Q 011351          474 ALEIARAALPVE  485 (488)
Q Consensus       474 ~~~~~~~~~~~~  485 (488)
                      ++..+++.+..+
T Consensus       443 ~~~~a~~~~~~~  454 (458)
T 1lvl_A          443 AVQEAALRALGH  454 (458)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHhcc
Confidence            999998766543

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=100.00  E-value=1.1e-40  Score=342.05  Aligned_cols=397  Identities=17%  Similarity=0.138  Sum_probs=268.4

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCC-----CccccCCC--CCCCCCCCCc--c----c
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPAL-----TKGYLFPL--DKKPARLPGF--H----T  116 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l-----~~~~~~~~--~~~~~~~~~~--~----~  116 (488)
                      .++||+|||||+||++||..|++.|.   +|+|||+++.- .. +..     ++.++...  .......+.+  .    .
T Consensus         7 ~~~DvvVIGgG~aGl~aA~~la~~G~---~V~liE~~~~G-Gt-c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~   81 (492)
T 3ic9_A            7 INVDVAIIGTGTAGMGAYRAAKKHTD---KVVLIEGGAYG-TT-CARVGCMPSKLLIAAADASYHASQTDLFGIQVDRIS   81 (492)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTCS---CEEEEESSCSS-CH-HHHHSHHHHHHHHHHHHHHHHHTCGGGGTEECSEEE
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCC---cEEEEeCCCCC-Cc-ccccChhcCHHHHHHHHHHHHHhhhhhcCcCCCCCc
Confidence            35899999999999999999999987   89999997521 00 000     00000000  0000000000  0    0


Q ss_pred             ccCCCCCCCCH-----------hHHHHC-CCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCC
Q 011351          117 CVGSGGERQTP-----------EWYKEK-GIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY  184 (488)
Q Consensus       117 ~~~~~~~~~~~-----------~~~~~~-~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~  184 (488)
                      ........+..           ..+... +++++.+ ...-.  +.++|.+.+++++.||+||||||+.|.. |+.++..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g-~a~~~--~~~~v~~~~~~~~~~d~lViATGs~p~~-p~~~~~~  157 (492)
T 3ic9_A           82 VNGKAVMKRIQTERDRFVGFVVESVESFDEQDKIRG-FAKFL--DEHTLQVDDHSQVIAKRIVIATGSRPNY-PEFLAAA  157 (492)
T ss_dssp             ECHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGEEES-CEEEE--ETTEEEETTTEEEEEEEEEECCCEECCC-CHHHHTT
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhhcCeeEEEE-EEEEe--cCCEEEEcCCcEEEeCEEEEccCCCCcC-CCCCCcc
Confidence            00000000000           111111 3445543 33223  3568888888899999999999998873 4433332


Q ss_pred             CCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCc
Q 011351          185 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGV  264 (488)
Q Consensus       185 ~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV  264 (488)
                      .+.+.+      ++.+......+++++|||+|.+|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+++. |
T Consensus       158 ~~~v~t------~~~~~~~~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~~-V  229 (492)
T 3ic9_A          158 GSRLLT------NDNLFELNDLPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANL-QDEEMKRYAEKTFNEE-F  229 (492)
T ss_dssp             GGGEEC------HHHHTTCSSCCSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTC-CCHHHHHHHHHHHHTT-S
T ss_pred             CCcEEc------HHHHhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc-CCHHHHHHHHHHHhhC-c
Confidence            233332      3334343456899999999999999999999999999999999999874 7999999999999988 9


Q ss_pred             EEEcCCeEEEEEeCCCCcEEEEEeC--CC--cEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeC-CCCCCCCCC
Q 011351          265 KFVKGASIKNLEAGSDGRVAAVKLE--DG--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVD-GQFRTRMPG  336 (488)
Q Consensus       265 ~v~~~~~v~~i~~~~~~~v~~v~l~--~g--~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd-~~~~t~~~~  336 (488)
                      ++++++++++++..+ +.+ .+.+.  +|  +++++|.|++|+|++|++++  ++.+|+..+ +|+|.|| ++++|+.|+
T Consensus       230 ~i~~~~~v~~i~~~~-~~v-~v~~~~~~G~~~~i~~D~Vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~~t~~~~  307 (492)
T 3ic9_A          230 YFDAKARVISTIEKE-DAV-EVIYFDKSGQKTTESFQYVLAATGRKANVDKLGLENTSIELDKKNSPLFDELTLQTSVDH  307 (492)
T ss_dssp             EEETTCEEEEEEECS-SSE-EEEEECTTCCEEEEEESEEEECSCCEESCSSSCGGGSCCCBCTTCCBCCCTTTCBCSSTT
T ss_pred             EEEECCEEEEEEEcC-CEE-EEEEEeCCCceEEEECCEEEEeeCCccCCCCCChhhcCCEECCCCCEeECcccccCCCCC
Confidence            999999999998653 333 35553  67  67999999999999999988  788899876 6789999 899999999


Q ss_pred             EEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcC-CCC--CCCCCCceeEeccccCCCCcceeeEEeeCCCC-
Q 011351          337 IFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA-QTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-  412 (488)
Q Consensus       337 Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~-~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~-  412 (488)
                      |||+|||+..+.          .+..|..||+.+|.||++. ...  .+..+|+   ..|..+      .+..+|.... 
T Consensus       308 IyA~GD~~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~---~~~~~p------~~a~vGlte~~  368 (492)
T 3ic9_A          308 IFVAGDANNTLT----------LLHEAADDGKVAGTNAGAYPVIAQGQRRAPLS---VVFTEP------QVASVGLSLRQ  368 (492)
T ss_dssp             EEECGGGGTSSC----------SHHHHHHHHHHHHHHHHHTTSCCEECCCCCEE---EECSSS------EEEEEESCHHH
T ss_pred             EEEEEecCCCCc----------cHHHHHHHHHHHHHHHcCCCCCcccCCCCCcE---EEECCC------CeEEecCCHHH
Confidence            999999998542          4567999999999999973 222  2333443   222211      1333443321 


Q ss_pred             -----------cEEE-Ec-----------cCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC-h-hh
Q 011351          413 -----------ETIE-IG-----------NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AK  464 (488)
Q Consensus       413 -----------~~~~-~~-----------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~  464 (488)
                                 .... .-           .....+.|+.++  +++|+|+++++.++.++... ..+|+.+.+++ . ..
T Consensus       369 a~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~  448 (492)
T 3ic9_A          369 IEDLYADQDAANYVVGQVSFEGQGRSRVMGKNKGLLNVYADRTSGEFLGAEMFGPAAEHIGHLLAWARQQQMTVQAMLTM  448 (492)
T ss_dssp             HHHHCSCSSSCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHTTS
T ss_pred             HHhccCccCCccEEEEEEEeccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhC
Confidence                       1110 00           112457888775  59999999988888777655 44578888876 2 44


Q ss_pred             hcCCCcHHHHHHHHHccCCc
Q 011351          465 LQQASSVEEALEIARAALPV  484 (488)
Q Consensus       465 ~~~~~~~~~~~~~~~~~~~~  484 (488)
                      ++.|||++|+++.|++++.+
T Consensus       449 ~~~hPt~~e~~~~a~~~~~~  468 (492)
T 3ic9_A          449 PFYHPVIEEGLRTALRDAQQ  468 (492)
T ss_dssp             CCCTTCTHHHHHHHHHHHHH
T ss_pred             CCCCCChHHHHHHHHHHHHH
Confidence            58899999999999887654

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=100.00  E-value=2.3e-41  Score=347.01  Aligned_cols=395  Identities=20%  Similarity=0.254  Sum_probs=274.4

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC------CC--------------CCccccCCCCCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER------PA--------------LTKGYLFPLDKKPA  109 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~------~~--------------l~~~~~~~~~~~~~  109 (488)
                      .++||+|||||+||++||..|++.|.   +|+|||++.. ....      |.              ....+.........
T Consensus        25 ~~~DVvVIGgG~aGl~aA~~la~~G~---~V~liEk~~~-GG~~~~~gcip~k~l~~~a~~~~~~~~~~~~g~~~~~~~~  100 (484)
T 3o0h_A           25 FDFDLFVIGSGSGGVRAARLAGALGK---RVAIAEEYRI-GGTCVIRGCVPKKLYFYASQYAQEFSKSIGFGWKYADPIF  100 (484)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCT-THHHHHHSHHHHHHHHHHHHHHHHHHHHGGGTBCCCCCEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCcC---EEEEEeCCCC-CCceeccCccccHHHHHHHHHHHHHHHHHhCCcccCCCcc
Confidence            35899999999999999999999987   8999999431 1000      00              00000000000000


Q ss_pred             CCCCcccc---cCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeC-CCcEEEeccEEeccCCCCCcCCCCCCCCC
Q 011351          110 RLPGFHTC---VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITN-SGKLLKYGSLIVATGCTASRFPEKIGGYL  185 (488)
Q Consensus       110 ~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~-~g~~i~yd~lVlAtG~~~~~~~~~~g~~~  185 (488)
                      ++......   ...........++++.+++++.+ .+..++.  +.+.+. +++.+.||+||+|||+.+...|.++|.+ 
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~i~~--~~v~v~~~~~~~~~d~lviAtG~~p~~~p~i~G~~-  176 (484)
T 3o0h_A          101 NWEKLVAAKNKEISRLEGLYREGLQNSNVHIYES-RAVFVDE--HTLELSVTGERISAEKILIATGAKIVSNSAIKGSD-  176 (484)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-CEEEEET--TEEEETTTCCEEEEEEEEECCCEEECCC--CBTGG-
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEeeC--CEEEEecCCeEEEeCEEEEccCCCcccCCCCCCcc-
Confidence            00000000   00000001123446679999886 6777764  567776 7788999999999999876234444422 


Q ss_pred             CcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcE
Q 011351          186 PGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK  265 (488)
Q Consensus       186 ~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~  265 (488)
                       .+.+      .+.+......+++++|||+|.+|+|+|..+.+.|.+|+++++.+++++. +++++.+.+.+.+++.||+
T Consensus       177 -~~~~------~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~Gv~  248 (484)
T 3o0h_A          177 -LCLT------SNEIFDLEKLPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILRN-FDYDLRQLLNDAMVAKGIS  248 (484)
T ss_dssp             -GSBC------TTTGGGCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHHTCE
T ss_pred             -cccc------HHHHHhHHhcCCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCccccc-cCHHHHHHHHHHHHHCCCE
Confidence             1111      1222222345899999999999999999999999999999999998875 7999999999999999999


Q ss_pred             EEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChh--hhhcCCccc-CCCEEeCCCCCCCCCCEEEEce
Q 011351          266 FVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGD  342 (488)
Q Consensus       266 v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD  342 (488)
                      ++++++|++++.++ +.+ .+.+.+|+++++|.||+|+|++|+..+  ++..|+..+ +|+|.||++++|+.|||||+||
T Consensus       249 i~~~~~V~~i~~~~-~~v-~v~~~~g~~i~aD~Vi~A~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD  326 (484)
T 3o0h_A          249 IIYEATVSQVQSTE-NCY-NVVLTNGQTICADRVMLATGRVPNTTGLGLERAGVKVNEFGAVVVDEKMTTNVSHIWAVGD  326 (484)
T ss_dssp             EESSCCEEEEEECS-SSE-EEEETTSCEEEESEEEECCCEEECCTTCCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECGG
T ss_pred             EEeCCEEEEEEeeC-CEE-EEEECCCcEEEcCEEEEeeCCCcCCCCCChhhcCceECCCCCEeECCCCCCCCCCEEEEEe
Confidence            99999999998653 344 688899999999999999999999887  678888876 5779999999999999999999


Q ss_pred             ecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCCCCceeEeccccCCCCcceeeEEeeCCCCc-------
Q 011351          343 VAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------  413 (488)
Q Consensus       343 ~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~-------  413 (488)
                      |+..+.          .+..|..+|+.+|++|++....  .+..+|+.   .|..+-      +..+|....+       
T Consensus       327 ~~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~---~~~~p~------~a~vGlte~~a~~~g~~  387 (484)
T 3o0h_A          327 VTGHIQ----------LTPVAIHDAMCFVKNAFENTSTTPDYDLITTA---VFSQPE------IGTVGLSEEDALHRYKR  387 (484)
T ss_dssp             GGTSCC----------CHHHHHHHHHHHHHHHHC---CCCCCTTCCEE---ECCSSC------EEEEECCHHHHHHHCSE
T ss_pred             cCCCCc----------CHHHHHHHHHHHHHHHcCCCCCcCCCCCCcEE---EECCCC------EEEeeCCHHHHHHcCCC
Confidence            997432          4567999999999999975433  34556642   333221      4455544321       


Q ss_pred             EE-EEc-----------cCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhcCCCCC-h-hhhcCCCcHHHHHH
Q 011351          414 TI-EIG-----------NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEEALE  476 (488)
Q Consensus       414 ~~-~~~-----------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~~~~  476 (488)
                      +. ...           .....+.|+.++  +++|+|+++++.++.++... ..+|+.+.+++ . ..++.|||++|++.
T Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~  467 (484)
T 3o0h_A          388 VEIYRTVFRPMRNVLSGSPEKMFMKLVVDGESRIVVGAHVLGENAGEIAQLIGISLKGKLTKDIFDKTMAVHPTMSEELV  467 (484)
T ss_dssp             EEEEEEEECCHHHHHHTCCCCEEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCSGGGGG
T ss_pred             EEEEEecCCcchhhccCCCCcEEEEEEEECCCCEEEEEEEECcCHHHHHHHHHHHHHCCCCHHHHhccccCCCChHHHHH
Confidence            11 110           112457787775  59999999988888776655 44578888876 3 44699999999999


Q ss_pred             HHHcc
Q 011351          477 IARAA  481 (488)
Q Consensus       477 ~~~~~  481 (488)
                      +++..
T Consensus       468 ~~~~~  472 (484)
T 3o0h_A          468 TMYKP  472 (484)
T ss_dssp             CCCSC
T ss_pred             HHhhh
Confidence            88743

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=100.00  E-value=1.5e-39  Score=333.96  Aligned_cols=399  Identities=19%  Similarity=0.233  Sum_probs=270.5

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC-CCCCcc---------------------------c
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER-PALTKG---------------------------Y  100 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~-~~l~~~---------------------------~  100 (488)
                      .+++||+|||||+||++||..|++.|.   +|+|||+.+..++.. ..+-..                           +
T Consensus         4 ~~~~DvvVIG~G~aGl~aA~~la~~G~---~V~liEk~~~~~~~~~~~~GGtc~~~gciPsk~l~~~~~~~~~~~~~~~~   80 (488)
T 3dgz_A            4 QQSFDLLVIGGGSGGLACAKEAAQLGK---KVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAHHY   80 (488)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECCCCCCTTSCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCC---eEEEEEecccccccccCCcCCeecccCCcccHHHHHHHHHHHHHHHHHhc
Confidence            346899999999999999999999987   899999843222110 000000                           0


Q ss_pred             cCCCC-CCCCCCCCccccc---CCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCC--cEEEeccEEeccCCCC
Q 011351          101 LFPLD-KKPARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTA  174 (488)
Q Consensus       101 ~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g--~~i~yd~lVlAtG~~~  174 (488)
                      -.... ....++.......   ...........+++.+++++.+ .+..+++....+.+.+|  .++.||+||||||+.|
T Consensus        81 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~g-~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p  159 (488)
T 3dgz_A           81 GWEVAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNI-KASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRP  159 (488)
T ss_dssp             TCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECC-EEEESSSSEEEEECTTSCEEEEEEEEEEECCCEEE
T ss_pred             CcccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCeEEEEeCCCceEEEECCEEEEcCCCCC
Confidence            00000 0000000000000   0000000112345678998864 66666666566666666  4799999999999988


Q ss_pred             CcCCC-CCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHH
Q 011351          175 SRFPE-KIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQ  253 (488)
Q Consensus       175 ~~~~~-~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~  253 (488)
                      .. |+ ++|.+...    .   +++.+......+++++|||+|.+|+|+|..|.++|.+|+++++.. +++ .+++++.+
T Consensus       160 ~~-p~~i~G~~~~~----~---~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~-~l~-~~d~~~~~  229 (488)
T 3dgz_A          160 RY-PTQVKGALEYG----I---TSDDIFWLKESPGKTLVVGASYVALECAGFLTGIGLDTTVMMRSI-PLR-GFDQQMSS  229 (488)
T ss_dssp             CC-CSSCBTHHHHC----B---CHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-SST-TSCHHHHH
T ss_pred             CC-CCCCCCccccc----C---cHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHcCCceEEEEcCc-ccc-cCCHHHHH
Confidence            64 43 45431111    1   233333333467899999999999999999999999999999864 555 47999999


Q ss_pred             HHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCC---Cc--EEEcCEEEEeecCccCChh--hhhcCCccc--CCCE
Q 011351          254 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---GS--TIDADTIVIGIGAKPTVSP--FERVGLNSS--VGGI  324 (488)
Q Consensus       254 ~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~---g~--~i~~D~vi~a~G~~p~~~~--~~~~gl~~~--~g~i  324 (488)
                      .+.+.+++.||++++++.+++++..+++.+ .+.+.+   |+  ++++|.|++|+|++|++++  ++..++..+  +|+|
T Consensus       230 ~l~~~l~~~gv~~~~~~~v~~i~~~~~~~~-~v~~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~~G~i  308 (488)
T 3dgz_A          230 LVTEHMESHGTQFLKGCVPSHIKKLPTNQL-QVTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKI  308 (488)
T ss_dssp             HHHHHHHHTTCEEEETEEEEEEEECTTSCE-EEEEEETTTTEEEEEEESEEEECSCEEESCGGGTGGGGTCCBCSSSCCB
T ss_pred             HHHHHHHHCCCEEEeCCEEEEEEEcCCCcE-EEEEEeCCCCeeEEEECCEEEEcccCCcccCcCCccccCcEecCCCCeE
Confidence            999999999999999999999986444443 344433   54  4799999999999999987  678888875  6789


Q ss_pred             EeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCCCCceeEeccccCCCCcce
Q 011351          325 QVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKV  402 (488)
Q Consensus       325 ~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~  402 (488)
                      .||+++||+.|||||+|||+...         ...+..|..+|+.+|.||++....  .+..+|+..   |..+      
T Consensus       309 ~vd~~~~t~~~~IyA~GD~~~~~---------~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~---~~~p------  370 (488)
T 3dgz_A          309 IVDAQEATSVPHIYAIGDVAEGR---------PELTPTAIKAGKLLAQRLFGKSSTLMDYSNVPTTV---FTPL------  370 (488)
T ss_dssp             CCCTTSBCSSTTEEECGGGBTTC---------CCCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCEEE---CSSS------
T ss_pred             eECCCCccCCCCEEEeEEecCCC---------CcchhHHHHHHHHHHHHHcCCCCccCCCCCCCEEE---ECCC------
Confidence            99999999999999999998521         115567999999999999975433  355566532   2211      


Q ss_pred             eeEEeeCCCC---------cE-EEEcc------------CCCcEEEEEEE---CCEEEEEEeecCChHHhhHH-HHHHhc
Q 011351          403 WWQFFGDNVG---------ET-IEIGN------------FDPKIATFWID---SGKLKGVLVESGSPEEFQLL-PTLARS  456 (488)
Q Consensus       403 ~~~~~g~~~~---------~~-~~~~~------------~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~-~~~~~~  456 (488)
                      .+..+|....         .+ +....            ....+.|+.++   +++|+|+++++.++.++... ..+|++
T Consensus       371 ~~a~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~  450 (488)
T 3dgz_A          371 EYGCVGLSEEEAVALHGQEHVEVYHAYYKPLEFTVADRDASQCYIKMVCMREPPQLVLGLHFLGPNAGEVTQGFALGIKC  450 (488)
T ss_dssp             EEEEEECCHHHHHHHHCGGGEEEEEEECCCHHHHHTTCCCTTCEEEEEEESSTTCBEEEEEEEETTHHHHHHHHHHHHHT
T ss_pred             CeEEEeCCHHHHHhhCCCCcEEEEEccccchhhhhhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHC
Confidence            1334444321         01 11100            12467888775   49999999988887776655 445788


Q ss_pred             CCCCCh--hhhcCCCcHHHHHHHHHc
Q 011351          457 QPFVDK--AKLQQASSVEEALEIARA  480 (488)
Q Consensus       457 ~~~~~~--~~~~~~~~~~~~~~~~~~  480 (488)
                      +.+++.  ..++.|||++|++..+..
T Consensus       451 ~~t~~~l~~~~~~hPt~~e~~~~~~~  476 (488)
T 3dgz_A          451 GASYAQVMQTVGIHPTCSEEVVKLHI  476 (488)
T ss_dssp             TCBHHHHHTSCCCSSCSTHHHHTCCE
T ss_pred             CCCHHHHhccccCCCChHHHHHHHHH
Confidence            888862  446999999999998753

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=100.00  E-value=4.4e-40  Score=339.63  Aligned_cols=400  Identities=19%  Similarity=0.235  Sum_probs=269.0

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-CCCcccc-------------------------C
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-ALTKGYL-------------------------F  102 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~-~l~~~~~-------------------------~  102 (488)
                      +.++||+|||||+||++||..|++.|.   +|+|||+++..+.... .+-..++                         +
T Consensus        30 ~~~~DVvVIGgGpaGl~aA~~la~~G~---~V~liEk~~~~~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~~~~~~~~~  106 (519)
T 3qfa_A           30 SYDYDLIIIGGGSGGLAAAKEAAQYGK---KVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNY  106 (519)
T ss_dssp             SCSEEEEEECCSHHHHHHHHHHHHTTC---CEEEECCCCCCTTCCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCC---eEEEEeccCccccccCCCcccccCCcCccchHHHHHHHHHHHHHHHHHhc
Confidence            446899999999999999999999987   8999998652211100 0000000                         0


Q ss_pred             CCC--C-CCCCCCCcccccC---CCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCc--EEEeccEEeccCCCC
Q 011351          103 PLD--K-KPARLPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTA  174 (488)
Q Consensus       103 ~~~--~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~--~i~yd~lVlAtG~~~  174 (488)
                      ...  . ...++..+.....   ..........++..+++++.+ .+..+++....+...+|+  ++.||+||||||+.|
T Consensus       107 g~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g-~a~~~d~~~v~v~~~~g~~~~i~~d~lViATGs~p  185 (519)
T 3qfa_A          107 GWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENA-YGQFIGPHRIKATNNKGKEKIYSAERFLIATGERP  185 (519)
T ss_dssp             TBCCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECS-EEEEEETTEEEEECTTCCCCEEEEEEEEECCCEEE
T ss_pred             CcccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEeeCCEEEEEcCCCCEEEEECCEEEEECCCCc
Confidence            000  0 0000000000000   000000112345679999875 677788776677776664  799999999999988


Q ss_pred             CcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHH
Q 011351          175 SRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR  254 (488)
Q Consensus       175 ~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~  254 (488)
                      .. |+++|...    ...   +.+.+......+++++|||+|.+|+|+|..|.++|.+|+++++. .+++ .+++++.+.
T Consensus       186 ~~-p~i~G~~~----~~~---t~~~~~~l~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~-~~l~-~~d~~~~~~  255 (519)
T 3qfa_A          186 RY-LGIPGDKE----YCI---SSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILLR-GFDQDMANK  255 (519)
T ss_dssp             CC-CCCTTHHH----HCB---CHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSST-TSCHHHHHH
T ss_pred             CC-CCCCCccC----ceE---cHHHHhhhhhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecc-cccc-cCCHHHHHH
Confidence            63 44444211    111   23333333346788999999999999999999999999999985 6666 479999999


Q ss_pred             HHHHHHHcCcEEEcCCeEEEEEeCCC---CcE-EEEEeCCC-c--EEEcCEEEEeecCccCChh--hhhcCCccc--CCC
Q 011351          255 YEQLYQQNGVKFVKGASIKNLEAGSD---GRV-AAVKLEDG-S--TIDADTIVIGIGAKPTVSP--FERVGLNSS--VGG  323 (488)
Q Consensus       255 ~~~~l~~~GV~v~~~~~v~~i~~~~~---~~v-~~v~l~~g-~--~i~~D~vi~a~G~~p~~~~--~~~~gl~~~--~g~  323 (488)
                      +.+.+++.||++++++.+++++..++   +.+ ..+...+| +  ++++|.|++|+|++|++++  ++.+|++.+  +|+
T Consensus       256 ~~~~l~~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~~G~  335 (519)
T 3qfa_A          256 IGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGK  335 (519)
T ss_dssp             HHHHHHHTTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEESCSSSCSTTTTCCCCTTTCC
T ss_pred             HHHHHHHCCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCcccCCCCChhhcCcEEcCCCCe
Confidence            99999999999999988888765322   322 22334555 2  5789999999999999886  678888875  578


Q ss_pred             EEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCCCCceeEeccccCCCCcc
Q 011351          324 IQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRK  401 (488)
Q Consensus       324 i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~  401 (488)
                      |.||+++||+.|||||+|||+...         ...+..|..||+.+|+||++....  .+..+|+  ....+..     
T Consensus       336 I~Vd~~~~Ts~~~IyA~GD~~~g~---------~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~--~~~~~p~-----  399 (519)
T 3qfa_A          336 IPVTDEEQTNVPYIYAIGDILEDK---------VELTPVAIQAGRLLAQRLYAGSTVKCDYENVPT--TVFTPLE-----  399 (519)
T ss_dssp             BCCCTTSBCSSTTEEECGGGBSSS---------CCCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCE--EECSSSC-----
T ss_pred             EeeCCCCccCCCCEEEEEeccCCC---------CccHHHHHHHHHHHHHHHcCCCCccCCCCcCcE--EEECCCc-----
Confidence            999999999999999999999421         125667899999999999975433  3444554  2222221     


Q ss_pred             eeeEEeeCCCC---------cEEE-Ec------------cCCCcEEEEEEE---CCEEEEEEeecCChHHhhHH-HHHHh
Q 011351          402 VWWQFFGDNVG---------ETIE-IG------------NFDPKIATFWID---SGKLKGVLVESGSPEEFQLL-PTLAR  455 (488)
Q Consensus       402 ~~~~~~g~~~~---------~~~~-~~------------~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~-~~~~~  455 (488)
                        +..+|....         .+.. ..            .....+.|+.++   +++|+|+++++.++.++... ..+|+
T Consensus       400 --~a~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~~ilGa~i~g~~a~e~i~~~~~ai~  477 (519)
T 3qfa_A          400 --YGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALK  477 (519)
T ss_dssp             --EEEEECCHHHHHHHHCGGGEEEEEEEECCHHHHTTTCCTTTEEEEEEEETTTTCEEEEEEEESTTHHHHHHHHHHHHH
T ss_pred             --eEEecCCHHHHHhhCCCCCEEEEEEeccchhhhhhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHH
Confidence              344554321         1111 00            012457888775   48999999988877776644 45678


Q ss_pred             cCCCCCh--hhhcCCCcHHHHHHHHHc
Q 011351          456 SQPFVDK--AKLQQASSVEEALEIARA  480 (488)
Q Consensus       456 ~~~~~~~--~~~~~~~~~~~~~~~~~~  480 (488)
                      ++.+++.  ..++.|||++|++..+..
T Consensus       478 ~~~t~~~l~~~~~~hPt~~E~~~~~~~  504 (519)
T 3qfa_A          478 CGLTKKQLDSTIGIHPVCAEVFTTLSV  504 (519)
T ss_dssp             TTCBHHHHHHSCCCTTCGGGGGGGCCC
T ss_pred             CCCCHHHHhccccCCCChHHHHHHHHh
Confidence            8888862  446999999999987653

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=100.00  E-value=5.2e-41  Score=344.42  Aligned_cols=398  Identities=20%  Similarity=0.220  Sum_probs=270.2

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-------CCCCCCC------c----------------c
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP-------YERPALT------K----------------G   99 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~-------~~~~~l~------~----------------~   99 (488)
                      +.++||+|||||+||++||..|++.|.   +|+|||+....+       +....+.      +                .
T Consensus         7 ~~~~DvvVIGgG~aGl~aA~~la~~G~---~V~liEk~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~   83 (483)
T 3dgh_A            7 SYDYDLIVIGGGSAGLACAKEAVLNGA---RVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAA   83 (483)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTC---CEEEECCCCCCTTTTCCCCSSCHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCC---EEEEEEeccccccccccCCcCCeecccCchhhHHHHHHHHHHHHHHHHHh
Confidence            356899999999999999999999987   899999532111       0000000      0                0


Q ss_pred             ccCCCCC-CCCCCCCccccc---CCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCc-EEEeccEEeccCCCC
Q 011351          100 YLFPLDK-KPARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK-LLKYGSLIVATGCTA  174 (488)
Q Consensus       100 ~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~-~i~yd~lVlAtG~~~  174 (488)
                      +-..... ...++..+....   ...........++..+++++.+ .+.-+++....+.+.+|+ ++.||+||||||+.|
T Consensus        84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~a~~~~~~~v~v~~~~g~~~~~~d~lviATGs~p  162 (483)
T 3dgh_A           84 YGWNVDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYING-LGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRP  162 (483)
T ss_dssp             TTBCCCCCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECS-EEEEEETTEEEEECTTCCEEEEEEEEEECCCEEE
T ss_pred             cCcccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEccCCEEEEEeCCCeEEEEcCEEEEeCCCCc
Confidence            0000000 000000000000   0000000112345678998875 666677666667777774 799999999999988


Q ss_pred             CcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHH
Q 011351          175 SRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR  254 (488)
Q Consensus       175 ~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~  254 (488)
                      .. |+++|.+..    ..   +++.+......+++++|||+|.+|+|+|..|.++|.+|+++++. .+++ .+++++.+.
T Consensus       163 ~~-p~i~G~~~~----~~---~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~l~-~~d~~~~~~  232 (483)
T 3dgh_A          163 RY-PDIPGAVEY----GI---TSDDLFSLDREPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRS-IVLR-GFDQQMAEL  232 (483)
T ss_dssp             CC-CSSTTHHHH----CB---CHHHHTTCSSCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-CSST-TSCHHHHHH
T ss_pred             CC-CCCCCcccc----cC---cHHHHhhhhhcCCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCC-CCCc-ccCHHHHHH
Confidence            63 454442111    11   23333333346789999999999999999999999999999984 5665 479999999


Q ss_pred             HHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCc-----EEEcCEEEEeecCccCChhh--hhcCCcccCCCEEeC
Q 011351          255 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-----TIDADTIVIGIGAKPTVSPF--ERVGLNSSVGGIQVD  327 (488)
Q Consensus       255 ~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~-----~i~~D~vi~a~G~~p~~~~~--~~~gl~~~~g~i~vd  327 (488)
                      +.+.+++.||++++++.+++++..+++.+ .+.+.+++     ++++|.|++|+|++|+++++  +..|++.++|+|.||
T Consensus       233 l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~-~v~~~~~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~G~i~vd  311 (483)
T 3dgh_A          233 VAASMEERGIPFLRKTVPLSVEKQDDGKL-LVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQKDKIPVD  311 (483)
T ss_dssp             HHHHHHHTTCCEEETEEEEEEEECTTSCE-EEEEEETTTCCEEEEEESEEEECSCEEECCGGGTGGGTTCCCBTTBBCCC
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEEcCCCcE-EEEEecCCCCceeEEEcCEEEECcccccCcCcCCchhcCccccCCEEEEC
Confidence            99999999999999999999986545544 46665543     79999999999999999886  788988877889999


Q ss_pred             CCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCCCCceeEeccccCCCCcceeeE
Q 011351          328 GQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQ  405 (488)
Q Consensus       328 ~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~  405 (488)
                      ++++|+.|||||+|||+...         ...+..|..||+.+|+||++....  .+..+|+..   |..+      .+.
T Consensus       312 ~~~~t~~~~IyA~GD~~~~~---------~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~---~~~p------~~a  373 (483)
T 3dgh_A          312 SQEATNVANIYAVGDIIYGK---------PELTPVAVLAGRLLARRLYGGSTQRMDYKDVATTV---FTPL------EYA  373 (483)
T ss_dssp             TTCBCSSTTEEECSTTBTTS---------CCCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCEEE---CSSS------EEE
T ss_pred             cCCccCCCCEEEEEcccCCC---------CccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCEEE---ECCC------ccE
Confidence            99999999999999998421         125567999999999999975433  355566532   2211      133


Q ss_pred             EeeCCCC---------cEE-EEc------------cCCCcEEEEEEE---CCEEEEEEeecCChHHhhHH-HHHHhcCCC
Q 011351          406 FFGDNVG---------ETI-EIG------------NFDPKIATFWID---SGKLKGVLVESGSPEEFQLL-PTLARSQPF  459 (488)
Q Consensus       406 ~~g~~~~---------~~~-~~~------------~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~  459 (488)
                      .+|....         .+. ...            .....+.|+.++   +++|+|+++++.++.++... ..+|+++.+
T Consensus       374 ~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t  453 (483)
T 3dgh_A          374 CVGLSEEDAVKQFGADEIEVFHGYYKPTEFFIPQKSVRYCYLKAVAERHGDQRVYGLHYIGPVAGEVIQGFAAALKSGLT  453 (483)
T ss_dssp             EEECCHHHHHHHHCGGGEEEEEEECCCGGGTTTTCCCTTCEEEEEEESSTTCBEEEEEEEETTHHHHHHHHHHHHHTTCB
T ss_pred             EEeCCHHHHHhhCCCCCEEEEEEeecchhhhhhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCC
Confidence            3443321         011 100            012347887764   48999999988887776655 445788888


Q ss_pred             CC-h-hhhcCCCcHHHHHHHHH
Q 011351          460 VD-K-AKLQQASSVEEALEIAR  479 (488)
Q Consensus       460 ~~-~-~~~~~~~~~~~~~~~~~  479 (488)
                      ++ . ..++.|||++|++..+.
T Consensus       454 ~~~l~~~~~~hPt~~e~~~~~~  475 (483)
T 3dgh_A          454 INTLINTVGIHPTTAEEFTRLA  475 (483)
T ss_dssp             HHHHHTSCCCSSCSGGGGGGCC
T ss_pred             HHHHhhcccCCCChHHHHHHHH
Confidence            76 2 44689999999998765

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=100.00  E-value=6e-41  Score=343.49  Aligned_cols=298  Identities=21%  Similarity=0.279  Sum_probs=226.9

Q ss_pred             CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCH
Q 011351           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP  127 (488)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (488)
                      .+++++|||||||+||+++|..|++.++   +|||||+++++.|. |.|+. .... ...+..+           .....
T Consensus        39 ~~~KprVVIIGgG~AGl~~A~~L~~~~~---~VtLId~~~~~~~~-PlL~~-va~G-~l~~~~i-----------~~p~~  101 (502)
T 4g6h_A           39 HSDKPNVLILGSGWGAISFLKHIDTKKY---NVSIISPRSYFLFT-PLLPS-APVG-TVDEKSI-----------IEPIV  101 (502)
T ss_dssp             SCSSCEEEEECSSHHHHHHHHHSCTTTC---EEEEEESSSEEECG-GGGGG-TTTT-SSCGGGG-----------EEEHH
T ss_pred             CCCCCCEEEECCcHHHHHHHHHhhhCCC---cEEEECCCCCcccc-cchhH-Hhhc-cccHHHh-----------hhhHH
Confidence            4567899999999999999999988765   89999999988775 55432 1111 0000000           00111


Q ss_pred             hHH--HHCCCeEEeCCcEEEEeCCCcEEEeC--------------------CCcEEEeccEEeccCCCCCcCCCCCCCCC
Q 011351          128 EWY--KEKGIEMIYQDPVTSIDIEKQTLITN--------------------SGKLLKYGSLIVATGCTASRFPEKIGGYL  185 (488)
Q Consensus       128 ~~~--~~~~i~~~~~~~v~~id~~~~~v~~~--------------------~g~~i~yd~lVlAtG~~~~~~~~~~g~~~  185 (488)
                      ...  .+.+++++. .+|++||+++++|++.                    ++.++.||+||||||+.+.. +.+||.. 
T Consensus       102 ~~~~~~~~~v~~~~-~~v~~ID~~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~-~~ipG~~-  178 (502)
T 4g6h_A          102 NFALKKKGNVTYYE-AEATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNT-FGIPGVT-  178 (502)
T ss_dssp             HHHTTCSSCEEEEE-EEEEEEEGGGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEECC-TTCTTHH-
T ss_pred             HHHHhhcCCeEEEE-EEEEEEEhhhCEEEEeecccceeecccccccccccCCceEEeCCEEEEcCCccccc-CCccCcc-
Confidence            222  235788887 5899999999988763                    35679999999999999874 4445532 


Q ss_pred             CcEEEecCHHHHHHHHHhhh-----------------cCCeEEEECCCHHHHHHHHHHHhCC--------------CcEE
Q 011351          186 PGVHYIRDVADADALISSLE-----------------KAKKVVVVGGGYIGMEVAAAAVGWK--------------LDTT  234 (488)
Q Consensus       186 ~gv~~~~~~~~~~~~~~~~~-----------------~~~~vvVvG~G~~g~e~A~~l~~~g--------------~~v~  234 (488)
                      +..+.++++.++..+++.+.                 ...+++|||+|++|+|+|.+|.+++              .+|+
T Consensus       179 e~a~~l~t~~dA~~ir~~l~~~~e~a~~~~~~~~~~~~~~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~  258 (502)
T 4g6h_A          179 DYGHFLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIH  258 (502)
T ss_dssp             HHCEECSSHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEE
T ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHHhcccccchhhccccceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeE
Confidence            33467888888877655431                 1247999999999999999987642              5799


Q ss_pred             EEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCc----EEEcCEEEEeecCccCC-
Q 011351          235 IIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS----TIDADTIVIGIGAKPTV-  309 (488)
Q Consensus       235 lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~----~i~~D~vi~a~G~~p~~-  309 (488)
                      ++++.+++++. +++++++.+++.|+++||+++++++|++++.  ++.+....+.||+    ++++|.||||+|.+|+. 
T Consensus       259 lve~~~~il~~-~~~~~~~~~~~~L~~~GV~v~~~~~v~~v~~--~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv~~~~~  335 (502)
T 4g6h_A          259 LVEALPIVLNM-FEKKLSSYAQSHLENTSIKVHLRTAVAKVEE--KQLLAKTKHEDGKITEETIPYGTLIWATGNKARPV  335 (502)
T ss_dssp             EECSSSSSSTT-SCHHHHHHHHHHHHHTTCEEETTEEEEEECS--SEEEEEEECTTSCEEEEEEECSEEEECCCEECCHH
T ss_pred             EeccccccccC-CCHHHHHHHHHHHHhcceeeecCceEEEEeC--CceEEEEEecCcccceeeeccCEEEEccCCcCCHH
Confidence            99999999985 8999999999999999999999999999973  3444455666764    69999999999999983 


Q ss_pred             --hhhhhcCCccc-CCCEEeCCCCCC-CCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 011351          310 --SPFERVGLNSS-VGGIQVDGQFRT-RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  376 (488)
Q Consensus       310 --~~~~~~gl~~~-~g~i~vd~~~~t-~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~  376 (488)
                        ++....++..+ +|+|.||++||+ ++|||||+|||+..+.++        ..+.|.+||+.+|+||.+
T Consensus       336 ~~~l~~~~~~~~~~~g~I~Vd~~lq~~~~~~IfAiGD~a~~~~p~--------~a~~A~qqg~~~A~ni~~  398 (502)
T 4g6h_A          336 ITDLFKKIPEQNSSKRGLAVNDFLQVKGSNNIFAIGDNAFAGLPP--------TAQVAHQEAEYLAKNFDK  398 (502)
T ss_dssp             HHHHHHHSGGGTTCCSSEEBCTTSBBTTCSSEEECGGGEESSSCC--------CHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHhccccccCCCceeECCccccCCCCCEEEEEcccCCCCCC--------chHHHHHHHHHHHHHHHH
Confidence              23445565544 688999999999 899999999999876543        566799999999999954

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=100.00  E-value=6.8e-40  Score=336.47  Aligned_cols=399  Identities=17%  Similarity=0.209  Sum_probs=251.7

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC-CCCCC-----------ccccCCC-----CCCCCCCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE-RPALT-----------KGYLFPL-----DKKPARLPG  113 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~-~~~l~-----------~~~~~~~-----~~~~~~~~~  113 (488)
                      .+|++|||||+||++||..+++.|.   +|+|||+.....+. +..+-           |.++...     ........+
T Consensus        42 dYDviVIG~GpaG~~aA~~aa~~G~---kValIE~~~~~~~~~k~~lGGtCln~GCIPsK~L~~aa~~~~~~~~~~~~~G  118 (542)
T 4b1b_A           42 DYDYVVIGGGPGGMASAKEAAAHGA---RVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGHMGSIFKLDSKAYG  118 (542)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTC---CEEEECCCCCCTTCCCCCSSHHHHHHSHHHHHHHHHHHHHHHHHHHTGGGGT
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccccccccccCCCCCcccccchHHHHHHHHHHHHHHHHHhhhHhcC
Confidence            4799999999999999999999987   89999976532211 01110           0000000     000000000


Q ss_pred             cccc-cCCCC--------------CCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeC----CCcEEEeccEEeccCCCC
Q 011351          114 FHTC-VGSGG--------------ERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITN----SGKLLKYGSLIVATGCTA  174 (488)
Q Consensus       114 ~~~~-~~~~~--------------~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~----~g~~i~yd~lVlAtG~~~  174 (488)
                      +... ...++              .......+++.+++++.+ ...-+++..-.|...    +++.+.+|++|||||++|
T Consensus       119 i~~~~~~~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V~~i~G-~a~f~~~~~v~V~~~~~~~~~~~i~a~~iiIATGs~P  197 (542)
T 4b1b_A          119 WKFDNLKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYING-LAKLKDKNTVSYYLKGDLSKEETVTGKYILIATGCRP  197 (542)
T ss_dssp             EEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECE-EEEEEETTEEEEEEC--CCCEEEEEEEEEEECCCEEE
T ss_pred             cccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEee-eEEEcCCCcceEeecccCCceEEEeeeeEEeccCCCC
Confidence            0000 00000              000123356678998875 444444433333332    335799999999999998


Q ss_pred             CcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHH
Q 011351          175 SRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR  254 (488)
Q Consensus       175 ~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~  254 (488)
                      ..+|..++ ....+      .+++.+++....+++++|||+|++|+|+|..++++|.+||++.+. ++++. +++++.+.
T Consensus       198 ~~P~~~~~-~~~~~------~ts~~~l~l~~lP~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~-~~L~~-~D~ei~~~  268 (542)
T 4b1b_A          198 HIPDDVEG-AKELS------ITSDDIFSLKKDPGKTLVVGASYVALECSGFLNSLGYDVTVAVRS-IVLRG-FDQQCAVK  268 (542)
T ss_dssp             CCCSSSBT-HHHHC------BCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHHTCCEEEEESS-CSSTT-SCHHHHHH
T ss_pred             CCCCcccC-CCccc------cCchhhhccccCCceEEEECCCHHHHHHHHHHHhcCCeEEEeccc-ccccc-cchhHHHH
Confidence            75433221 11111      135556665567899999999999999999999999999999874 66764 79999999


Q ss_pred             HHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChh--hhhcCCccc-CCC-EEeCCCC
Q 011351          255 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGG-IQVDGQF  330 (488)
Q Consensus       255 ~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~-i~vd~~~  330 (488)
                      +.+.|++.||+++++..+++++..+ +. ..+.+.+++++.+|.|++|+|++||++.  ++..++..+ +++ +.+|+++
T Consensus       269 l~~~l~~~gi~~~~~~~v~~~~~~~-~~-~~v~~~~~~~~~~D~vLvAvGR~Pnt~~L~le~~gv~~~~~~~~i~vd~~~  346 (542)
T 4b1b_A          269 VKLYMEEQGVMFKNGILPKKLTKMD-DK-ILVEFSDKTSELYDTVLYAIGRKGDIDGLNLESLNMNVNKSNNKIIADHLS  346 (542)
T ss_dssp             HHHHHHHTTCEEEETCCEEEEEEET-TE-EEEEETTSCEEEESEEEECSCEEESCGGGCGGGTTCCEETTTTEECCCTTS
T ss_pred             HHHHHHhhcceeecceEEEEEEecC-Ce-EEEEEcCCCeEEEEEEEEcccccCCccccCcccceeeecccCceEeccccc
Confidence            9999999999999999999998653 33 3578889999999999999999999986  456777765 344 5789999


Q ss_pred             CCCCCCEEEEceeccc-CCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCCCCceeEeccccCCCCcceeeEEe
Q 011351          331 RTRMPGIFAIGDVAAF-PLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFF  407 (488)
Q Consensus       331 ~t~~~~Ifa~GD~a~~-~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~  407 (488)
                      ||++|||||+|||+.. |.          ....|..+|+.++.++++....  .|..+|+.   .|..+-      +..+
T Consensus       347 ~Ts~p~IyAiGDv~~~~p~----------La~~A~~eg~~aa~~i~g~~~~~~d~~~iP~~---vft~Pe------iA~V  407 (542)
T 4b1b_A          347 CTNIPSIFAVGDVAENVPE----------LAPVAIKAGEILARRLFKDSDEIMDYSYIPTS---IYTPIE------YGAC  407 (542)
T ss_dssp             BCSSTTEEECTTSBTTCCC----------CHHHHHHHHHHHHHHHHSCCCCCCCCSSCCEE---ECSSSC------EEEE
T ss_pred             cccCCCeEEeccccCCchh----------HHHHHHHHHHHHHHHHhcCCCcccCCCCCceE---EeCCCC------eEEE
Confidence            9999999999999963 22          3345889999999999985543  45567753   333221      2233


Q ss_pred             eCCCCc---------E-EE--------------------------EccCCCcEEEEEE-E--CCEEEEEEeecCChHHhh
Q 011351          408 GDNVGE---------T-IE--------------------------IGNFDPKIATFWI-D--SGKLKGVLVESGSPEEFQ  448 (488)
Q Consensus       408 g~~~~~---------~-~~--------------------------~~~~~~~~~~~~~-~--~~~~~g~~~~~~~~~~~~  448 (488)
                      |....+         + +.                          .......|.++.. +  +++|+|+++++.++.++.
T Consensus       408 GlTE~eA~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vKli~~~~~t~~ILGa~ivG~~A~ElI  487 (542)
T 4b1b_A          408 GYSEEKAYELYGKSNVEVFLQEFNNLEISAVHRQKHIRAQKDEYDLDVSSTCLAKLVCLKNEDNRVIGFHYVGPNAGEVT  487 (542)
T ss_dssp             ECCHHHHHHHHCTTTEEEEEC-----------------------------CCCEEEEEETTTTTBEEEEEEESTTHHHHH
T ss_pred             eCCHHHHHHhCCCCcEEEEEeeccchhhhhhhhhhhhhcccccccccCCCceEEEEEEEeCCCCEEEEEEEECCCHHHHH
Confidence            322110         0 00                          0001134566654 3  589999999888888877


Q ss_pred             HHHH-HHhcCCCCC--hhhhcCCCcHHHHHHHHHccCC
Q 011351          449 LLPT-LARSQPFVD--KAKLQQASSVEEALEIARAALP  483 (488)
Q Consensus       449 ~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  483 (488)
                      +.-. +|+.+.+++  ...++.|||++|++.++..++.
T Consensus       488 ~~~alAi~~~~t~~dl~~~i~~HPTlsE~l~~~~~t~~  525 (542)
T 4b1b_A          488 QGMALALRLKVKKKDFDNCIGIHPTDAESFMNLFVTIS  525 (542)
T ss_dssp             HHHHHHHHTCCBHHHHHHC-------------------
T ss_pred             HHHHHHHHcCCCHHHHhccCCcCCCHHHHHHHHHHHHH
Confidence            6655 468888876  2446999999999999877653

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=100.00  E-value=1.6e-38  Score=334.35  Aligned_cols=398  Identities=17%  Similarity=0.229  Sum_probs=264.5

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-CCCccc----------c---------------C
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-ALTKGY----------L---------------F  102 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~-~l~~~~----------~---------------~  102 (488)
                      ..++||+|||||+||++||..|++.|.   +|+|||+....+.... .+...+          +               +
T Consensus       105 ~~~~dvvVIG~GpAGl~aA~~l~~~g~---~v~liE~~~~~~~g~~~~~GG~~~~~g~iP~~~l~~~~~~~~~~~~~~~~  181 (598)
T 2x8g_A          105 KYDYDLIVIGGGSGGLAAGKEAAKYGA---KTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLLSHALEDAEHF  181 (598)
T ss_dssp             SSSEEEEEECCSHHHHHHHHHHHHTTC---CEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccccEEEECCCccHHHHHHHHHhCCC---eEEEEeccCCcccccccccCceEeccCCCchHHHHHHHHHHHHHhhHHhC
Confidence            446899999999999999999999987   8999997422111100 000000          0               0


Q ss_pred             CCCCCCCC-C-CCcccccCCCCCC--------CCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCC--cEEEeccEEecc
Q 011351          103 PLDKKPAR-L-PGFHTCVGSGGER--------QTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVAT  170 (488)
Q Consensus       103 ~~~~~~~~-~-~~~~~~~~~~~~~--------~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g--~~i~yd~lVlAt  170 (488)
                      ... .+.. . ..+....  .+..        .....+...+++++.+ .+..++.....+...+|  .++.||+|||||
T Consensus       182 g~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~V~~~~~-~~~~~~~~~v~v~~~~g~~~~~~~d~lviAt  257 (598)
T 2x8g_A          182 GWS-LDRSKISHNWSTMV--EGVQSHIGSLNWGYKVALRDNQVTYLNA-KGRLISPHEVQITDKNQKVSTITGNKIILAT  257 (598)
T ss_dssp             TCC-CCGGGCCCCHHHHH--HHHHHHHHHHHHHHHHHHHHTTCEEECS-EEEEEETTEEEEECTTCCEEEEEEEEEEECC
T ss_pred             Ccc-ccCCcCccCHHHHH--HHHHHHHHHHHHHHHHHHhhCCcEEEEE-EEEEcCCCEEEEEeCCCCeEEEEeCEEEEeC
Confidence            000 0000 0 0000000  0000        0011234568988864 56667765555555666  468999999999


Q ss_pred             CCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHH
Q 011351          171 GCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPS  250 (488)
Q Consensus       171 G~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~  250 (488)
                      |+.|+ .|+++|.+. ...      +.+.+......+++++|||+|.+|+|+|..|+++|.+|+++++. .+++ .++++
T Consensus       258 Gs~p~-~p~i~G~~~-~~~------~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~l~-~~d~~  327 (598)
T 2x8g_A          258 GERPK-YPEIPGAVE-YGI------TSDDLFSLPYFPGKTLVIGASYVALECAGFLASLGGDVTVMVRS-ILLR-GFDQQ  327 (598)
T ss_dssp             CEEEC-CCSSTTHHH-HCE------EHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSST-TSCHH
T ss_pred             CCCCC-CCCCCCccc-ceE------cHHHHhhCccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC-cCcC-cCCHH
Confidence            99876 344444211 011      12333332345789999999999999999999999999999998 6665 47899


Q ss_pred             HHHHHHHHHHHcCcEEEcCCeEEEEEeC-----CC---CcE-EEEEeCCCcEEE--cCEEEEeecCccCChh--hhhcCC
Q 011351          251 LAQRYEQLYQQNGVKFVKGASIKNLEAG-----SD---GRV-AAVKLEDGSTID--ADTIVIGIGAKPTVSP--FERVGL  317 (488)
Q Consensus       251 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~-----~~---~~v-~~v~l~~g~~i~--~D~vi~a~G~~p~~~~--~~~~gl  317 (488)
                      +.+.+.+.+++.||++++++.++++...     ++   +.+ ..+.+.+|++++  +|.|++|+|++|++++  ++..|+
T Consensus       328 ~~~~~~~~l~~~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~~~~~gl  407 (598)
T 2x8g_A          328 MAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCETVGV  407 (598)
T ss_dssp             HHHHHHHHHHHTTCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECSCEEECGGGTBCGGGCC
T ss_pred             HHHHHHHHHHhCCCEEEECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEeCCccccCccCchhcCc
Confidence            9999999999999999999988888532     11   333 123456787665  9999999999999887  577888


Q ss_pred             ccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC--CCCCCCCceeEeccc
Q 011351          318 NSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT--HTYDYLPYFYSRVFE  394 (488)
Q Consensus       318 ~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~--~~~~~~p~~~~~~~~  394 (488)
                      +.+ +|+|.||++++|+.|+|||+|||+...         ...+..|..+|+.+|.+|++...  ..|..+|+.+   |.
T Consensus       408 ~~~~~G~i~vd~~~~ts~~~VyA~GD~~~~~---------~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~~---~~  475 (598)
T 2x8g_A          408 KLDKNGRVVCTDDEQTTVSNVYAIGDINAGK---------PQLTPVAIQAGRYLARRLFAGATELTDYSNVATTV---FT  475 (598)
T ss_dssp             CBCTTSCBCCCTTSBCSSTTEEECGGGBTTS---------CCCHHHHHHHHHHHHHHHHHCCCCCCCCTTCCEEE---CS
T ss_pred             eECCCCcEEeCCCCcCCCCCEEEEeeecCCC---------CccHHHHHHhHHHHHHHHhcCCCcccCCCCCcEEE---EC
Confidence            875 577999999999999999999996531         12566799999999999997543  2355566532   22


Q ss_pred             cCCCCcceeeEEeeCCCC---------cEEEE------------c-cCCCcEEEEEEE---CCEEEEEEeecCChHHhhH
Q 011351          395 YEGSPRKVWWQFFGDNVG---------ETIEI------------G-NFDPKIATFWID---SGKLKGVLVESGSPEEFQL  449 (488)
Q Consensus       395 ~~g~~~~~~~~~~g~~~~---------~~~~~------------~-~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~  449 (488)
                      .+-      +..+|....         .+...            + .....+.++.++   +++|+|+++++.++.++..
T Consensus       476 ~~~------~a~vGl~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~~ilG~~~~g~~a~~~i~  549 (598)
T 2x8g_A          476 PLE------YGACGLSEEDAIEKYGDKDIEVYHSNFKPLEWTVAHREDNVCYMKLVCRKSDNMRVLGLHVLGPNAGEITQ  549 (598)
T ss_dssp             SSC------EEEEECCHHHHHHHHCGGGEEEEEEEECCTHHHHTTCCSSCEEEEEEEETTTTTEEEEEEEESTTHHHHHH
T ss_pred             CCc------eEEEeCCHHHHHhhCCCCcEEEEEEeccchhHHhhcCCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHH
Confidence            110      333443211         01110            0 112357788775   6999999987777776665


Q ss_pred             H-HHHHhcCCCCC--hhhhcCCCcHHHHHHHHHcc
Q 011351          450 L-PTLARSQPFVD--KAKLQQASSVEEALEIARAA  481 (488)
Q Consensus       450 ~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  481 (488)
                      . ..+|+++.+++  ...++.|||++|++..++..
T Consensus       550 ~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~  584 (598)
T 2x8g_A          550 GYAVAIKMGATKADFDRTIGIHPTCSETFTTLHVT  584 (598)
T ss_dssp             HHHHHHHTTCBHHHHHHSCCCSSCSGGGGGSCCCB
T ss_pred             HHHHHHHcCCCHHHHhhccccCCCHHHHHHHHHHh
Confidence            4 45578888776  24469999999999888753

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=100.00  E-value=3.5e-39  Score=326.19  Aligned_cols=330  Identities=18%  Similarity=0.168  Sum_probs=233.8

Q ss_pred             cccccccceeeccccC--CCCcccceec---ccccccccccccccc------cc---ccCCCCCeEEEEcCchHHHHHHH
Q 011351            3 SVSNSLSFKHGLSLWC--PQSPSLHRIR---HSSAKNFQRRGFVVA------YS---SFANENREFVIVGGGNAAGYAAR   68 (488)
Q Consensus         3 ~~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~------~~---~~~~~~~~vvIIGgG~AGl~aA~   68 (488)
                      ..+|||+.+||++|.+  +|+.+|.+..   .++++....++..+.      ..   +.....++|+|||||+||+++|.
T Consensus        60 ~~~n~~p~~~grvCp~~~~Ce~~C~~~~~~~~~v~I~~le~~~~~~~~~~~~~~~~~~~~~~~~~V~IIGgGpAGl~aA~  139 (456)
T 2vdc_G           60 QATNNFPEICGRICPQDRLCEGNCVIEQSTHGAVTIGSVEKYINDTAWDQGWVKPRTPSRELGLSVGVIGAGPAGLAAAE  139 (456)
T ss_dssp             HHHCSCHHHHHHHCCGGGSGGGGCGGGGSSSCSCCHHHHHHHHHHHHHHHTCCCCCCSCSSCCCCEEEECCSHHHHHHHH
T ss_pred             HhhCCCCccccccCCCCcchHHhcccCCCCCCCccHHHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECCCHHHHHHHH
Confidence            3689999999999999  9999999985   566666655655321      11   11245689999999999999999


Q ss_pred             HHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHHHCCCeEEeCCcEEEEeC
Q 011351           69 TFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDI  148 (488)
Q Consensus        69 ~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~  148 (488)
                      .|++.|+   +|+|||+++.....   +.  +-.+..    +++.       ....+..+++++.+++++.++.|.    
T Consensus       140 ~L~~~G~---~V~v~e~~~~~GG~---l~--~gip~~----~~~~-------~~~~~~~~~l~~~gv~~~~~~~v~----  196 (456)
T 2vdc_G          140 ELRAKGY---EVHVYDRYDRMGGL---LV--YGIPGF----KLEK-------SVVERRVKLLADAGVIYHPNFEVG----  196 (456)
T ss_dssp             HHHHHTC---CEEEECSSSSCSTH---HH--HTSCTT----TSCH-------HHHHHHHHHHHHTTCEEETTCCBT----
T ss_pred             HHHHCCC---eEEEEeccCCCCCe---ee--ecCCCc----cCCH-------HHHHHHHHHHHHCCcEEEeCCEec----
Confidence            9999987   79999998654210   00  101100    1110       001223466788899999886542    


Q ss_pred             CCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHH---H---------hhhcCCeEEEECCC
Q 011351          149 EKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALI---S---------SLEKAKKVVVVGGG  216 (488)
Q Consensus       149 ~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~---~---------~~~~~~~vvVvG~G  216 (488)
                        +.++++++. +.||+||||||+.....+.++|.+.+++++..++.......   .         ....+++|+|||+|
T Consensus       197 --~~v~~~~~~-~~~d~vvlAtG~~~~~~~~ipG~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~gk~VvVIGgG  273 (456)
T 2vdc_G          197 --RDASLPELR-RKHVAVLVATGVYKARDIKAPGSGLGNIVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKHVVVLGGG  273 (456)
T ss_dssp             --TTBCHHHHH-SSCSEEEECCCCCEECCTTCSCCTTTTEEEHHHHHHHHHHHHCTTTCSSCCTTCSCCCCSEEEEECSS
T ss_pred             --cEEEhhHhH-hhCCEEEEecCCCCCCCCCCCCCcCCCcEEHHHHHHHhhhhhcccccccccccccccCCCEEEEECCC
Confidence              223333332 57999999999974334567777778887643332221111   0         01357899999999


Q ss_pred             HHHHHHHHHHHhCCC-cEEEEecCCcC-cccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe------
Q 011351          217 YIGMEVAAAAVGWKL-DTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL------  288 (488)
Q Consensus       217 ~~g~e~A~~l~~~g~-~v~lv~~~~~~-l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l------  288 (488)
                      .+|+|+|..+.+.|. +|++++|++.+ ++. .+.+     .+.+++.||++++++.++++..  ++++.++.+      
T Consensus       274 ~~a~d~A~~~~r~Ga~~Vtiv~r~~~~~~p~-~~~e-----~~~~~~~Gv~~~~~~~~~~i~~--~g~v~~v~~~~~~~~  345 (456)
T 2vdc_G          274 DTAMDCVRTAIRQGATSVKCLYRRDRKNMPG-SQRE-----VAHAEEEGVEFIWQAAPEGFTG--DTVVTGVRAVRIHLG  345 (456)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEECSSCSTTCSS-CHHH-----HHHHHHTTCEEECCSSSCCEEE--EEEEETTEEEEEEEE
T ss_pred             hhHHHHHHHHHHcCCCEEEEEEeCCccCCCC-CHHH-----HHHHHHCCCEEEeCCCceEEeC--CCcEEEEEEEEEEec
Confidence            999999999999987 49999998876 543 2222     2457788999999999998874  333322222      


Q ss_pred             ---C---------CC--cEEEcCEEEEeecCccCCh--hhhhcCCccc-CCCEEeCCC-CCCCCCCEEEEceecccCCcc
Q 011351          289 ---E---------DG--STIDADTIVIGIGAKPTVS--PFERVGLNSS-VGGIQVDGQ-FRTRMPGIFAIGDVAAFPLKM  350 (488)
Q Consensus       289 ---~---------~g--~~i~~D~vi~a~G~~p~~~--~~~~~gl~~~-~g~i~vd~~-~~t~~~~Ifa~GD~a~~~~~~  350 (488)
                         .         +|  +++++|.||+|+|+.|+..  +++++++..+ +|+|.||++ ++|+.|+|||+|||+..+.  
T Consensus       346 ~~d~~G~~~~~~~~g~~~~i~aD~Vi~A~G~~p~~~~~~l~~~gl~~~~~G~i~vd~~~~~Ts~~~VfA~GD~~~g~~--  423 (456)
T 2vdc_G          346 VADATGRQTPQVIEGSEFTVQADLVIKALGFEPEDLPNAFDEPELKVTRWGTLLVDHRTKMTNMDGVFAAGDIVRGAS--  423 (456)
T ss_dssp             EEEECTTCCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHSTTSCBCTTSSBCCCTTTCBCSSTTEEECGGGGSSCC--
T ss_pred             ccCCcCCccccccCCcEEEEECCEEEECCCCCCCcchhhcccCCeeECCCCCEEECCCCCcCCCCCEEEeccccCCch--
Confidence               1         23  4699999999999999876  7888888865 688999997 9999999999999997543  


Q ss_pred             CCcccccccHHHHHHHHHHHHHHHhc
Q 011351          351 YDRTARVEHVDHARQSAQHCIKALLS  376 (488)
Q Consensus       351 ~~~~~~~~~~~~A~~~g~~~a~~i~~  376 (488)
                              .+..|..+|+.+|++|..
T Consensus       424 --------~v~~A~~~G~~aA~~i~~  441 (456)
T 2vdc_G          424 --------LVVWAIRDGRDAAEGIHA  441 (456)
T ss_dssp             --------SHHHHHHHHHHHHHHHHH
T ss_pred             --------HHHHHHHHHHHHHHHHHH
Confidence                    456688889998888864

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=100.00  E-value=7.9e-38  Score=305.95  Aligned_cols=298  Identities=18%  Similarity=0.249  Sum_probs=219.4

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHh
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (488)
                      +++++|+|||||+||+++|..|++.|+   +|+|||+++.......     ...+ .......+++.............+
T Consensus         3 ~~~~~vvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~~gg~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~l~~   73 (335)
T 2zbw_A            3 ADHTDVLIVGAGPTGLFAGFYVGMRGL---SFRFVDPLPEPGGQLT-----ALYP-EKYIYDVAGFPKVYAKDLVKGLVE   73 (335)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSSSCHHHH-----HTCT-TSEECCSTTCSSEEHHHHHHHHHH
T ss_pred             CCcCcEEEECCCHHHHHHHHHHHhCCC---CEEEEeCCCCCCCeee-----ccCC-CceeeccCCCCCCCHHHHHHHHHH
Confidence            446899999999999999999999887   8999999875421100     0000 000011111111000001112234


Q ss_pred             HHHHCCCeEEeCCcEEEEeCCC--cEEEeCCCcEEEeccEEeccCCC---CCcCCCCCCCCC---CcEEE-ecCHHHHHH
Q 011351          129 WYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCT---ASRFPEKIGGYL---PGVHY-IRDVADADA  199 (488)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~--~~v~~~~g~~i~yd~lVlAtG~~---~~~~~~~~g~~~---~gv~~-~~~~~~~~~  199 (488)
                      .+++.+++++.+++|+.++.+.  ..|.+.+++++.||+||+|||+.   +. .+.++|...   .++++ +++..    
T Consensus        74 ~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~p~-~~~i~g~~~~~~~~~~~~~~~~~----  148 (335)
T 2zbw_A           74 QVAPFNPVYSLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVGAFEPR-RIGAPGEREFEGRGVYYAVKSKA----  148 (335)
T ss_dssp             HHGGGCCEEEESCCEEEEEEETTEEEEEETTSCEEEEEEEEECCTTSEEEEC-CCCCTTTTTTBTTTEESSCSCGG----
T ss_pred             HHHHcCCEEEeCCEEEEEEECCCEEEEEECCCCEEEeCEEEECCCCCCCCCC-CCCCCChhhccCcEEEEecCchh----
Confidence            4556789998899999998765  35777788889999999999984   43 233444321   12321 11111    


Q ss_pred             HHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCC
Q 011351          200 LISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS  279 (488)
Q Consensus       200 ~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~  279 (488)
                          ...+++++|||+|.+|+|+|..|.+.+.+|+++++.+.+++   .+...+.+.+.+++.||++++++.+++++.  
T Consensus       149 ----~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~---~~~~~~~l~~~l~~~gv~v~~~~~v~~i~~--  219 (335)
T 2zbw_A          149 ----EFQGKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFRA---HEASVKELMKAHEEGRLEVLTPYELRRVEG--  219 (335)
T ss_dssp             ----GGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCCS---CHHHHHHHHHHHHTTSSEEETTEEEEEEEE--
T ss_pred             ----hcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccCc---cHHHHHHHHhccccCCeEEecCCcceeEcc--
Confidence                12579999999999999999999999999999999988765   356778888889999999999999999986  


Q ss_pred             CCcEEEEEeC---CC--cEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeCCCCCCCCCCEEEEceecccCCccCCcc
Q 011351          280 DGRVAAVKLE---DG--STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRT  354 (488)
Q Consensus       280 ~~~v~~v~l~---~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~  354 (488)
                      ++.+..+.+.   +|  +++++|.||+|+|++|+.++++++++..++|++.||++++|+.|||||+|||+..+..     
T Consensus       220 ~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~-----  294 (335)
T 2zbw_A          220 DERVRWAVVFHNQTQEELALEVDAVLILAGYITKLGPLANWGLALEKNKIKVDTTMATSIPGVYACGDIVTYPGK-----  294 (335)
T ss_dssp             SSSEEEEEEEETTTCCEEEEECSEEEECCCEEEECGGGGGSCCCEETTEEECCTTCBCSSTTEEECSTTEECTTC-----
T ss_pred             CCCeeEEEEEECCCCceEEEecCEEEEeecCCCCchHhhhcceeccCCeeeeCCCCCCCCCCEEEeccccccCcc-----
Confidence            3445566665   67  5799999999999999998999999987788999999999999999999999986532     


Q ss_pred             cccccHHHHHHHHHHHHHHHhc
Q 011351          355 ARVEHVDHARQSAQHCIKALLS  376 (488)
Q Consensus       355 ~~~~~~~~A~~~g~~~a~~i~~  376 (488)
                        ...+..|..+|+.+|++|.+
T Consensus       295 --~~~~~~A~~~g~~aa~~i~~  314 (335)
T 2zbw_A          295 --LPLIVLGFGEAAIAANHAAA  314 (335)
T ss_dssp             --CCCHHHHHHHHHHHHHHHHH
T ss_pred             --hhhhhhhHHHHHHHHHHHHH
Confidence              22567788999999999875

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=100.00  E-value=8.7e-38  Score=308.77  Aligned_cols=299  Identities=22%  Similarity=0.335  Sum_probs=219.6

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHh
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (488)
                      ++++||+|||||+||+++|..|++.|+   +|+|||+++.......     ...+ .......+++...........+.+
T Consensus        12 ~~~~dvvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~~gg~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~l~~   82 (360)
T 3ab1_A           12 HDMRDLTIIGGGPTGIFAAFQCGMNNI---SCRIIESMPQLGGQLA-----ALYP-EKHIYDVAGFPEVPAIDLVESLWA   82 (360)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCHHHH-----HTCT-TSEECCSTTCSSEEHHHHHHHHHH
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCC---CEEEEecCCCCCCccc-----ccCC-CcccccCCCCCCCCHHHHHHHHHH
Confidence            346899999999999999999999887   8999999865421100     0000 000011111111000001112234


Q ss_pred             HHHHCCCeEEeCCcEEEEeCCCc---EEEeCCCcEEEeccEEeccCCC---CCcCCCCCC-C-CCC--cEEE-ecCHHHH
Q 011351          129 WYKEKGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCT---ASRFPEKIG-G-YLP--GVHY-IRDVADA  197 (488)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~~---~v~~~~g~~i~yd~lVlAtG~~---~~~~~~~~g-~-~~~--gv~~-~~~~~~~  197 (488)
                      .+++.+++++.+++|+.++....   .|++.+|+.+.||+||+|||+.   +. .+.+++ . ...  ++++ +++..  
T Consensus        83 ~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~~~~~~-~~~i~g~~~~~~~~~v~~~~~~~~--  159 (360)
T 3ab1_A           83 QAERYNPDVVLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPR-KLPQLGNIDHLTGSSVYYAVKSVE--  159 (360)
T ss_dssp             HHHTTCCEEECSCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTTCSCCBC-CCGGGCCCTTTBTTTEESSCSCGG--
T ss_pred             HHHHhCCEEEcCCEEEEEEECCCceEEEEECCCcEEEeeEEEEccCCCcCCCC-CCCCCCchhhCcCceEEEecCCHH--
Confidence            45567899998889999987643   7888888889999999999984   33 233444 2 122  2322 12211  


Q ss_pred             HHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 011351          198 DALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  277 (488)
Q Consensus       198 ~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~  277 (488)
                            ...+++++|||+|.+|+|+|..|.+.+.+|+++++.+.+.+.   +...+.+.+.+++.||++++++++++++.
T Consensus       160 ------~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~---~~~~~~l~~~~~~~gv~i~~~~~v~~i~~  230 (360)
T 3ab1_A          160 ------DFKGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQGH---GKTAHEVERARANGTIDVYLETEVASIEE  230 (360)
T ss_dssp             ------GGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSSC---SHHHHSSHHHHHHTSEEEESSEEEEEEEE
T ss_pred             ------HcCCCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCCC---HHHHHHHHHHhhcCceEEEcCcCHHHhcc
Confidence                  125799999999999999999999999999999999877652   45677788888899999999999999986


Q ss_pred             CCCCcEEEEEeC--CC--cEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeCCCCCCCCCCEEEEceecccCCccCCc
Q 011351          278 GSDGRVAAVKLE--DG--STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR  353 (488)
Q Consensus       278 ~~~~~v~~v~l~--~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~  353 (488)
                      + ++++..|.+.  +|  +++++|.||+|+|++|+.++++.+++..++|+|.||++++|+.|+|||+|||+..+..    
T Consensus       231 ~-~~~v~~v~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~----  305 (360)
T 3ab1_A          231 S-NGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPLARWDLELYENALVVDSHMKTSVDGLYAAGDIAYYPGK----  305 (360)
T ss_dssp             E-TTEEEEEEEEETTCCEEEEECSEEEECCCBCCSCGGGGGSSCCEETTEEECCTTSBCSSTTEEECSTTEECTTC----
T ss_pred             C-CCceEEEEEEecCCCeEEEeCCEEEECCCCCCCHHHHHhhccccccCeeeecCCCcCCCCCEEEecCccCCCCc----
Confidence            4 4555566664  77  5799999999999999999999999887788999999999999999999999986532    


Q ss_pred             ccccccHHHHHHHHHHHHHHHhc
Q 011351          354 TARVEHVDHARQSAQHCIKALLS  376 (488)
Q Consensus       354 ~~~~~~~~~A~~~g~~~a~~i~~  376 (488)
                         ...+..|..+|..+|++|.+
T Consensus       306 ---~~~~~~A~~~g~~aa~~i~~  325 (360)
T 3ab1_A          306 ---LKIIQTGLSEATMAVRHSLS  325 (360)
T ss_dssp             ---CCSHHHHHHHHHHHHHHHHH
T ss_pred             ---cceeehhHHHHHHHHHHHHh
Confidence               22567789999999999875

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=100.00  E-value=4e-37  Score=297.87  Aligned_cols=294  Identities=22%  Similarity=0.312  Sum_probs=209.3

Q ss_pred             cCCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCC
Q 011351           47 FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQT  126 (488)
Q Consensus        47 ~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (488)
                      |+.+.+||+||||||||++||.+|++.|+   +|+|||++..-  .      .++.. . ...++|++....+.+.....
T Consensus         2 Mte~~yDvvIIG~GpAGl~aA~~l~~~g~---~V~liE~~~~g--G------~~~~~-~-~i~~~p~~~~~~~~~~~~~~   68 (312)
T 4gcm_A            2 MTEIDFDIAIIGAGPAGMTAAVYASRANL---KTVMIERGIPG--G------QMANT-E-EVENFPGFEMITGPDLSTKM   68 (312)
T ss_dssp             --CCSEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCTT--G------GGGGC-S-CBCCSTTCSSBCHHHHHHHH
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCC---CEEEEecCCCC--C------eeecc-c-ccCCcCCccccchHHHHHHH
Confidence            34457999999999999999999999987   89999986321  1      01100 0 01112222211111111223


Q ss_pred             HhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCC---cEEEecCHHHHHHHHHh
Q 011351          127 PEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP---GVHYIRDVADADALISS  203 (488)
Q Consensus       127 ~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~---gv~~~~~~~~~~~~~~~  203 (488)
                      ..++.+.+..+..+..+...+.....+...+++++.||+||||||+.|+. |++||.+..   ++.+.      ......
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~liiAtGs~~~~-~~ipG~~~~~~~~v~~~------~~~~~~  141 (312)
T 4gcm_A           69 FEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKK-IGVPGEQELGGRGVSYC------AVCDGA  141 (312)
T ss_dssp             HHHHHHTTCEEEECCCCEEEECSSCEEEECSSCEEEEEEEEECCCEEECC-CCCTTTTTTBTTTEESC------HHHHGG
T ss_pred             HHHHhhccccccceeeeeeeeeecceeeccCCeEEEeceeEEcccCccCc-CCCCChhhhCCccEEee------eccCcc
Confidence            44556678888877777777777777777888899999999999998874 556664432   23222      122233


Q ss_pred             hhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCc-
Q 011351          204 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR-  282 (488)
Q Consensus       204 ~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~-  282 (488)
                      ...+|+++|||+|++|+|+|..|+++|.+||++++.+++++..   .   ...+.+++.++.......+......+... 
T Consensus       142 ~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (312)
T 4gcm_A          142 FFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQR---I---LQDRAFKNDKIDFIWSHTLKSINEKDGKVG  215 (312)
T ss_dssp             GGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCSCH---H---HHHHHHHCTTEEEECSEEEEEEEEETTEEE
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEecccccCcch---h---HHHHHHHhcCcceeeecceeeeeccccccc
Confidence            4568999999999999999999999999999999999887641   1   22355677889988887777665432211 


Q ss_pred             -EEEEEe--CCCcEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeCCCCCCCCCCEEEEceecccCCccCCccccccc
Q 011351          283 -VAAVKL--EDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEH  359 (488)
Q Consensus       283 -v~~v~l--~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~  359 (488)
                       ......  .++..+++|.|++++|..|+..+++..++..++|+|.||+++|||+|||||+|||+..+..         .
T Consensus       216 ~~~~~~~~~~~~~~~~~d~v~~~~g~~~~~~~~~~~g~~~~~G~I~vd~~~~Ts~pgIyA~GDv~~~~~~---------~  286 (312)
T 4gcm_A          216 SVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGITNDVGYIVTKDDMTTSVPGIFAAGDVRDKGLR---------Q  286 (312)
T ss_dssp             EEEEEETTTCCEEEEECSEEEECSCEEESCGGGGGGTCBCTTSCBCCCTTSBCSSTTEEECSTTBSCSCC---------S
T ss_pred             cceeeeecCCceeEEeeeeEEeecCCCcCchhHHhcceecCCCeEeeCCCCccCCCCEEEEeecCCCcch---------H
Confidence             111112  2335799999999999999999999999988888999999999999999999999974321         3


Q ss_pred             HHHHHHHHHHHHHHHh
Q 011351          360 VDHARQSAQHCIKALL  375 (488)
Q Consensus       360 ~~~A~~~g~~~a~~i~  375 (488)
                      +..|..+|+.||.++.
T Consensus       287 ~~~A~~~G~~AA~~i~  302 (312)
T 4gcm_A          287 IVTATGDGSIAAQSAA  302 (312)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4568888888888875

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=100.00  E-value=1.4e-37  Score=303.65  Aligned_cols=293  Identities=17%  Similarity=0.234  Sum_probs=214.2

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      +++||+|||||+||+++|..|++.|+   +|+|||+++......    . ...+ ......++++.............++
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~~gG~~----~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   76 (332)
T 3lzw_A            6 KVYDITIIGGGPVGLFTAFYGGMRQA---SVKIIESLPQLGGQL----S-ALYP-EKYIYDVAGFPKIRAQELINNLKEQ   76 (332)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCHHH----H-HHCT-TSEECCSTTCSSEEHHHHHHHHHHH
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCC---CEEEEEcCCCCCcee----h-hcCC-CceEeccCCCCCCCHHHHHHHHHHH
Confidence            35799999999999999999999887   899999987543100    0 0000 0000111221111111111223445


Q ss_pred             HHHCCCeEEeCCcEEEEeCCCc---EEEeCCCcEEEeccEEeccCC---CCCcCCCCCCCCC---CcEEEecCHHHHHHH
Q 011351          130 YKEKGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGC---TASRFPEKIGGYL---PGVHYIRDVADADAL  200 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~---~v~~~~g~~i~yd~lVlAtG~---~~~~~~~~~g~~~---~gv~~~~~~~~~~~~  200 (488)
                      +++.+++++++++|++++...+   .+.+.+++ +.||+||+|||+   .+. .+.+++...   ..+++  ...+..  
T Consensus        77 ~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~-~~~d~vVlAtG~~~~~p~-~~~~~g~~~~~g~~~~~--~~~~~~--  150 (332)
T 3lzw_A           77 MAKFDQTICLEQAVESVEKQADGVFKLVTNEET-HYSKTVIITAGNGAFKPR-KLELENAEQYEGKNLHY--FVDDLQ--  150 (332)
T ss_dssp             HTTSCCEEECSCCEEEEEECTTSCEEEEESSEE-EEEEEEEECCTTSCCEEC-CCCCTTGGGGBTTTEES--SCSCGG--
T ss_pred             HHHhCCcEEccCEEEEEEECCCCcEEEEECCCE-EEeCEEEECCCCCcCCCC-CCCCCChhhccCceEEE--ecCCHH--
Confidence            5667999999999999998765   78888887 999999999999   554 344454332   23332  111111  


Q ss_pred             HHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCC
Q 011351          201 ISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD  280 (488)
Q Consensus       201 ~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~  280 (488)
                         ...+++++|||+|.+|+|+|..|.+.+.+|+++++.+.+.+.  ++     ..+.+++.||++++++.+++++.+++
T Consensus       151 ---~~~~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~~--~~-----~~~~l~~~gv~~~~~~~v~~i~~~~~  220 (332)
T 3lzw_A          151 ---KFAGRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRAH--EH-----SVENLHASKVNVLTPFVPAELIGEDK  220 (332)
T ss_dssp             ---GGBTCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCSSC--HH-----HHHHHHHSSCEEETTEEEEEEECSSS
T ss_pred             ---HcCCCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCCcc--HH-----HHHHHhcCCeEEEeCceeeEEecCCc
Confidence               125799999999999999999999999999999999887542  22     23447889999999999999985432


Q ss_pred             CcEEEEEeCC-----CcEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeCCCCCCCCCCEEEEceecccCCccCCccc
Q 011351          281 GRVAAVKLED-----GSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA  355 (488)
Q Consensus       281 ~~v~~v~l~~-----g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~  355 (488)
                        +..+.+.+     ++++++|.||+|+|++|+.++++.+++..++|+|.||++++|+.|||||+|||+..+..      
T Consensus       221 --~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~------  292 (332)
T 3lzw_A          221 --IEQLVLEEVKGDRKEILEIDDLIVNYGFVSSLGPIKNWGLDIEKNSIVVKSTMETNIEGFFAAGDICTYEGK------  292 (332)
T ss_dssp             --CCEEEEEETTSCCEEEEECSEEEECCCEECCCGGGGGSSCCEETTEEECCTTSBCSSTTEEECGGGEECTTC------
T ss_pred             --eEEEEEEecCCCceEEEECCEEEEeeccCCCchHHhhcCccccCCeEEeCCCCceecCCEEEccceecCCCC------
Confidence              34566655     45799999999999999999999999988888999999999999999999999976432      


Q ss_pred             ccccHHHHHHHHHHHHHHHhc
Q 011351          356 RVEHVDHARQSAQHCIKALLS  376 (488)
Q Consensus       356 ~~~~~~~A~~~g~~~a~~i~~  376 (488)
                       ...+..|..+|+.+|.+|+.
T Consensus       293 -~~~~~~A~~~g~~aa~~i~~  312 (332)
T 3lzw_A          293 -VNLIASGFGEAPTAVNNAKA  312 (332)
T ss_dssp             -CCCHHHHHHHHHHHHHHHHH
T ss_pred             -cceEeeehhhHHHHHHHHHH
Confidence             22567788899999998875

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=100.00  E-value=1.9e-36  Score=294.22  Aligned_cols=290  Identities=21%  Similarity=0.251  Sum_probs=213.4

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      +++||+|||||+||+++|..|++.|+   +|+|||++  .. ...      ..  ......++++.............++
T Consensus        14 ~~~~vvIIG~G~aGl~aA~~l~~~g~---~v~lie~~--~g-g~~------~~--~~~~~~~~~~~~~~~~~~~~~~~~~   79 (323)
T 3f8d_A           14 EKFDVIIVGLGPAAYGAALYSARYML---KTLVIGET--PG-GQL------TE--AGIVDDYLGLIEIQASDMIKVFNKH   79 (323)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESS--TT-GGG------GG--CCEECCSTTSTTEEHHHHHHHHHHH
T ss_pred             CccCEEEECccHHHHHHHHHHHHCCC---cEEEEecc--CC-Cee------cc--cccccccCCCCCCCHHHHHHHHHHH
Confidence            35799999999999999999999987   79999997  11 100      00  0001111111111111111223455


Q ss_pred             HHHCCCeEEeCCcEEEEeCCC--cEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCC---CcEEEecCHHHHHHHHHhh
Q 011351          130 YKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL---PGVHYIRDVADADALISSL  204 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~--~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~---~gv~~~~~~~~~~~~~~~~  204 (488)
                      +++.+++++. ++|++++.+.  ..+.+.++..+.||+||+|||+.+. .+.+++...   .++++.      .......
T Consensus        80 ~~~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~-~~~i~g~~~~~~~~~~~~------~~~~~~~  151 (323)
T 3f8d_A           80 IEKYEVPVLL-DIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKRR-KLGVPGEQEFAGRGISYC------SVADAPL  151 (323)
T ss_dssp             HHTTTCCEEE-SCEEEEEEC--CEEEEESSSCEEEEEEEEECCCCEEC-CCCCTTTTTTBTTTEESC------HHHHGGG
T ss_pred             HHHcCCEEEE-EEEEEEEecCCEEEEEECCCCEEEcCEEEECcCCCCc-cCCCCchhhhcCCceEEe------ccCCHhH
Confidence            6678999998 8999998774  4678888888999999999999876 455555433   444332      1122234


Q ss_pred             hcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEE
Q 011351          205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA  284 (488)
Q Consensus       205 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~  284 (488)
                      ..+++++|+|+|.+|+|+|..|.+.+.+|+++++.+.+++   ++.   .+.+.+++.||++++++++++++.+  +.+.
T Consensus       152 ~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~---~~~---~~~~~~~~~gv~~~~~~~v~~i~~~--~~~~  223 (323)
T 3f8d_A          152 FKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKA---QPI---YVETVKKKPNVEFVLNSVVKEIKGD--KVVK  223 (323)
T ss_dssp             GTTCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCCS---CHH---HHHHHHTCTTEEEECSEEEEEEEES--SSEE
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCCc---CHH---HHHHHHhCCCcEEEeCCEEEEEecc--Ccee
Confidence            5689999999999999999999999999999999988775   332   2333444559999999999999854  4555


Q ss_pred             EEEeCC---Cc--EEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccc
Q 011351          285 AVKLED---GS--TIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVE  358 (488)
Q Consensus       285 ~v~l~~---g~--~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~  358 (488)
                      .+.+.+   |+  ++++|.||+++|++|+.++++.+++..+ +|+|.||++++|+.|||||+|||+..+.       ...
T Consensus       224 ~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~g~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~-------~~~  296 (323)
T 3f8d_A          224 QVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNGYIKVDEWMRTSVPGVFAAGDCTSAWL-------GFR  296 (323)
T ss_dssp             EEEEEETTTCCEEEEECSEEEECCCEECCHHHHHHTTCCBCTTSSBCCCTTCBCSSTTEEECSTTBSTTT-------TCC
T ss_pred             EEEEEECCCCceEEEEcCEEEEEECCCCChhHHhhcCeeecCCCcEecCCCceecCCCEEEcceecCCCC-------ccc
Confidence            677765   76  7999999999999999999999999865 6889999999999999999999998641       022


Q ss_pred             cHHHHHHHHHHHHHHHhc
Q 011351          359 HVDHARQSAQHCIKALLS  376 (488)
Q Consensus       359 ~~~~A~~~g~~~a~~i~~  376 (488)
                      .+..|..+|+.+|.+|..
T Consensus       297 ~~~~A~~~g~~aa~~i~~  314 (323)
T 3f8d_A          297 QVITAVAQGAVAATSAYR  314 (323)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             ceeehhhHHHHHHHHHHH
Confidence            567788888888888753

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=100.00  E-value=2.9e-37  Score=341.06  Aligned_cols=348  Identities=18%  Similarity=0.180  Sum_probs=242.4

Q ss_pred             cccccccceeeccccC--CCCcccceec---cccccccccccccccc---------ccc--------CCCCCeEEEEcCc
Q 011351            3 SVSNSLSFKHGLSLWC--PQSPSLHRIR---HSSAKNFQRRGFVVAY---------SSF--------ANENREFVIVGGG   60 (488)
Q Consensus         3 ~~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~---------~~~--------~~~~~~vvIIGgG   60 (488)
                      ..+|||+++||++|.+  +|+.+|.+..   .++.+....|+..+..         .|.        ....++|+|||||
T Consensus       117 ~~~n~~p~~~grvCp~~~~Ce~~C~~~~~~~~pv~I~~le~~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~~VvVIGgG  196 (1025)
T 1gte_A          117 FSDNPLGLTCGMVCPTSDLCVGGCNLYATEEGSINIGGLQQFASEVFKAMNIPQIRNPCLPSQEKMPEAYSAKIALLGAG  196 (1025)
T ss_dssp             HHHCTTHHHHHHHCCGGGSGGGGCGGGGSTTCCCCHHHHHHHHHHHHHHHTCCCCCCTTSCCGGGSCGGGGCCEEEECCS
T ss_pred             HhcCChhHhhcCCCCChhhHHhhCccCCCCCCCccHhHHHHHHHHHHHHhCCccccCccccccccCCccCCCEEEEECcc
Confidence            3689999999999987  9999999965   5777777776665531         010        1235799999999


Q ss_pred             hHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHHHCCCeEEeC
Q 011351           61 NAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQ  140 (488)
Q Consensus        61 ~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  140 (488)
                      +||++||..|++.|+.  +|+|||+++.....   +.  +..+.    .+++.  .     ......+++++.+++++.+
T Consensus       197 pAGl~aA~~L~~~G~~--~Vtv~E~~~~~GG~---~~--~~ip~----~~~~~--~-----~~~~~~~~~~~~gv~~~~~  258 (1025)
T 1gte_A          197 PASISCASFLARLGYS--DITIFEKQEYVGGL---ST--SEIPQ----FRLPY--D-----VVNFEIELMKDLGVKIICG  258 (1025)
T ss_dssp             HHHHHHHHHHHHTTCC--CEEEEESSSSCSTH---HH--HTSCT----TTSCH--H-----HHHHHHHHHHTTTCEEEES
T ss_pred             HHHHHHHHHHHhcCCC--cEEEEeCCCCCCcc---cc--ccCCc----ccCCH--H-----HHHHHHHHHHHCCcEEEcc
Confidence            9999999999999872  69999997654221   00  00010    01100  0     0012245677889999998


Q ss_pred             CcEEEEeCCCcEEEeCCCcEEEeccEEeccCCC-CCcCCCCCCCC-CCcEEEecCHHHHHHHHHh----------hhcCC
Q 011351          141 DPVTSIDIEKQTLITNSGKLLKYGSLIVATGCT-ASRFPEKIGGY-LPGVHYIRDVADADALISS----------LEKAK  208 (488)
Q Consensus       141 ~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~-~~~~~~~~g~~-~~gv~~~~~~~~~~~~~~~----------~~~~~  208 (488)
                      +.+.     .+.++++++..+.||+||||||+. ++.++..+|.. .+++++..++.........          ...++
T Consensus       259 ~~v~-----~~~v~~~~~~~~~~d~vvlAtGa~~p~~l~~~~G~~~~~gv~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~  333 (1025)
T 1gte_A          259 KSLS-----ENEITLNTLKEEGYKAAFIGIGLPEPKTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRG  333 (1025)
T ss_dssp             CCBS-----TTSBCHHHHHHTTCCEEEECCCCCEECCCGGGTTCCTTTTEEEHHHHHHHHHHHHCBTTBSCCCCCCCCCS
T ss_pred             cEec-----cceEEhhhcCccCCCEEEEecCCCCCCCCCCCCCCCCCCCEEEhHHHHHHHHhhcccccccccccccccCC
Confidence            6652     134555555557899999999984 66444333422 3567654332211111000          12357


Q ss_pred             eEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCc-CcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEE
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV  286 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~-~v~lv~~~~~-~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v  286 (488)
                      +|+|||+|.+|+|+|..+.++|. +|+++++.+. +++ .+++++     +.+++.||++++++.++++... ++++..+
T Consensus       334 ~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~~~~~~-~~~~e~-----~~~~~~Gv~~~~~~~~~~i~~~-~g~v~~v  406 (1025)
T 1gte_A          334 AVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIR-AVPEEV-----ELAKEEKCEFLPFLSPRKVIVK-GGRIVAV  406 (1025)
T ss_dssp             EEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCC-SCHHHH-----HHHHHTTCEEECSEEEEEEEEE-TTEEEEE
T ss_pred             cEEEECCChHHHHHHHHHHHcCCCEEEEEEecChhhCC-CCHHHH-----HHHHHcCCEEEeCCCceEEEcc-CCeEEEE
Confidence            99999999999999999999996 8999999884 444 334433     4567889999999999999753 5666556


Q ss_pred             EeC------CC---------cEEEcCEEEEeecCccC-Chhhhh-cCCccc-CCCEEeCC-CCCCCCCCEEEEceecccC
Q 011351          287 KLE------DG---------STIDADTIVIGIGAKPT-VSPFER-VGLNSS-VGGIQVDG-QFRTRMPGIFAIGDVAAFP  347 (488)
Q Consensus       287 ~l~------~g---------~~i~~D~vi~a~G~~p~-~~~~~~-~gl~~~-~g~i~vd~-~~~t~~~~Ifa~GD~a~~~  347 (488)
                      .+.      +|         +++++|.||+|+|++|+ ..++++ .|++.+ +|+|.||+ +++|+.|+|||+|||+..+
T Consensus       407 ~~~~~~~~~~g~~~~~~g~~~~i~aD~Vi~A~G~~~~~~~l~~~~~gl~~~~~G~I~vd~~~~~Ts~~~VfA~GD~~~~~  486 (1025)
T 1gte_A          407 QFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMA  486 (1025)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBCSSTTEEECSGGGCSC
T ss_pred             EEEEeEEcCCCCcccCCCceEEEECCEEEECCCCCCCchhhhhcccCceECCCCCEEECCCCCccCCCCEEEeCCCCCCc
Confidence            542      23         36899999999999864 556666 488876 67799997 8999999999999999854


Q ss_pred             CccCCcccccccHHHHHHHHHHHHHHHhc------C-CCCCCCCCCceeE
Q 011351          348 LKMYDRTARVEHVDHARQSAQHCIKALLS------A-QTHTYDYLPYFYS  390 (488)
Q Consensus       348 ~~~~~~~~~~~~~~~A~~~g~~~a~~i~~------~-~~~~~~~~p~~~~  390 (488)
                      .          .+..|..+|+.+|++|.+      + ....+...||||+
T Consensus       487 ~----------~~~~A~~~G~~aA~~i~~~L~~~~~~~~~~~~~~p~~~~  526 (1025)
T 1gte_A          487 N----------TTVESVNDGKQASWYIHKYIQAQYGASVSAKPELPLFYT  526 (1025)
T ss_dssp             C----------CHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCCBCCCCC
T ss_pred             h----------HHHHHHHHHHHHHHHHHHHHHhccCCCcccCcCcccccc
Confidence            3          344578888888888863      1 2224577999998

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=100.00  E-value=2e-36  Score=305.44  Aligned_cols=302  Identities=20%  Similarity=0.207  Sum_probs=214.8

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (488)
                      .++|||||||+||++||.+|++.+. +.+|||||+++++.|. |.++. +... ...+.++           .....+++
T Consensus         2 ~K~VvIIGgG~aGl~aA~~L~~~~~-~~~VtlI~~~~~~~~~-p~l~~-v~~g-~~~~~~i-----------~~~~~~~~   66 (430)
T 3hyw_A            2 AKHVVVIGGGVGGIATAYNLRNLMP-DLKITLISDRPYFGFT-PAFPH-LAMG-WRKFEDI-----------SVPLAPLL   66 (430)
T ss_dssp             CCEEEEECSSHHHHHHHHHHHHHCT-TCEEEEECSSSEEECG-GGHHH-HHHT-CSCGGGS-----------EEESTTTG
T ss_pred             CCcEEEECCCHHHHHHHHHHhccCc-CCeEEEEcCCCCCccC-ccHHH-HhcC-CCCHHHh-----------hhcHHHHH
Confidence            4689999999999999999999875 6799999999988774 54432 1111 1111111           12234556


Q ss_pred             HHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhh---cC
Q 011351          131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE---KA  207 (488)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~---~~  207 (488)
                      ++.+++++.+ +|+.||+++++|++++|+++.||+||||||+++. + .++|.. ++...+.+..++.++++.+.   ..
T Consensus        67 ~~~gv~~i~~-~v~~Id~~~~~V~~~~g~~i~YD~LViAtG~~~~-~-~i~G~~-e~~~~~~~~~~a~~~~~~l~~~~~~  142 (430)
T 3hyw_A           67 PKFNIEFINE-KAESIDPDANTVTTQSGKKIEYDYLVIATGPKLV-F-GAEGQE-ENSTSICTAEHALETQKKLQELYAN  142 (430)
T ss_dssp             GGGTEEEECS-CEEEEETTTTEEEETTCCEEECSEEEECCCCEEE-C-CSBTHH-HHSCCCSSHHHHHHHHHHHHHHHHS
T ss_pred             HHCCcEEEEe-EEEEEECCCCEEEECCCCEEECCEEEEeCCCCcc-C-CccCcc-cCcCCcccHHHHHHHHHHHHhhccC
Confidence            7789999875 8999999999999999999999999999998753 3 344432 33456677777776665543   34


Q ss_pred             CeEEEECCCH------HHHHHH----HHHHhCC----CcEEEEecCCcCcc--cccCHHHHHHHHHHHHHcCcEEEcCCe
Q 011351          208 KKVVVVGGGY------IGMEVA----AAAVGWK----LDTTIIFPENHLLQ--RLFTPSLAQRYEQLYQQNGVKFVKGAS  271 (488)
Q Consensus       208 ~~vvVvG~G~------~g~e~A----~~l~~~g----~~v~lv~~~~~~l~--~~~~~~~~~~~~~~l~~~GV~v~~~~~  271 (488)
                      +.++|+|++.      .+.|++    ..+.+.+    .++++++..+.+..  ....+...+.+++.++++||++++++.
T Consensus       143 ~~~vv~gg~~gve~~~~~~e~a~~~~~~l~~~g~~~~v~v~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~GV~~~~~~~  222 (430)
T 3hyw_A          143 PGPVVIGAIPGVSCFGPAYEFALMLHYELKKRGIRYKVPMTFITSEPYLGHFGVGGIGASKRLVEDLFAERNIDWIANVA  222 (430)
T ss_dssp             CCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCCEEEECSSSSTTCTTTTCSTTHHHHHHHHHHHTTCEEECSCE
T ss_pred             CceEEEeCCCcEEEhHHHHHHHHHHHHHHHHhcccccceeeeecccchhhhccchhhHHHHHHHHHHHHhCCeEEEeCce
Confidence            5566666542      233444    3445554    46888887765532  234567788899999999999999999


Q ss_pred             EEEEEeCCCCcEEEEEeCCC--cEEEcCEEEEeecCccCChhhhhcCCc--cc-CCCEEeCCCCC-CCCCCEEEEceecc
Q 011351          272 IKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSPFERVGLN--SS-VGGIQVDGQFR-TRMPGIFAIGDVAA  345 (488)
Q Consensus       272 v~~i~~~~~~~v~~v~l~~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~--~~-~g~i~vd~~~~-t~~~~Ifa~GD~a~  345 (488)
                      |++++.+   .+ .+...+|  +++++|.+++++|.+|+ +++..+++.  .+ +|.+.||+++| |++|||||+|||+.
T Consensus       223 v~~v~~~---~~-~~~~~~g~~~~i~~d~vi~~~G~~~~-~~~~~~~~~l~~~~~g~i~vd~~lq~t~~~~IfAiGD~a~  297 (430)
T 3hyw_A          223 VKAIEPD---KV-IYEDLNGNTHEVPAKFTMFMPSFQGP-EVVASAGDKVANPANKMVIVNRCFQNPTYKNIFGVGVVTA  297 (430)
T ss_dssp             EEEECSS---EE-EEECTTSCEEEEECSEEEEECEEECC-HHHHTTCTTTBCTTTCCBCCCTTSBCSSSTTEEECSTTBC
T ss_pred             EEEEeCC---ce-EEEeeCCCceEeecceEEEeccCCCc-hHHHhcccccccCCceEEEecccccCCCCCCEEEeccEEe
Confidence            9999732   22 2333333  57999999999999998 677766543  34 35689999999 79999999999999


Q ss_pred             cCCccCCc--ccccccHHHHHHHHHHHHHHHhc
Q 011351          346 FPLKMYDR--TARVEHVDHARQSAQHCIKALLS  376 (488)
Q Consensus       346 ~~~~~~~~--~~~~~~~~~A~~~g~~~a~~i~~  376 (488)
                      .|......  .....+.+.|.+||+.+|+||+.
T Consensus       298 ~p~~~~~~~~~~~pk~a~~A~~qg~~~A~Ni~~  330 (430)
T 3hyw_A          298 IPPIEKTPIPTGVPKTGMMIEQMAMAVAHNIVN  330 (430)
T ss_dssp             CCCSSCCSSCCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCcccCcCcCccchHHHHHHHHHHHHHHHHHH
Confidence            87532111  11123566799999999999975

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=100.00  E-value=1.3e-35  Score=288.25  Aligned_cols=289  Identities=24%  Similarity=0.286  Sum_probs=209.4

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHh
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (488)
                      ++++||+|||||+||+++|..|++.|+   +|+|||+....  .......        ....++++....+........+
T Consensus        14 ~~~~dvvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~g--g~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~   80 (319)
T 3cty_A           14 ERDFDVVIVGAGAAGFSAAVYAARSGF---SVAILDKAVAG--GLTAEAP--------LVENYLGFKSIVGSELAKLFAD   80 (319)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSTT--GGGGGCS--------CBCCBTTBSSBCHHHHHHHHHH
T ss_pred             cCCCcEEEECcCHHHHHHHHHHHhCCC---cEEEEeCCCCC--ccccccc--------hhhhcCCCcccCHHHHHHHHHH
Confidence            345799999999999999999999987   89999985321  0000000        0001111100000000112334


Q ss_pred             HHHHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCC---CcEEEecCHHHHHHHHHh
Q 011351          129 WYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL---PGVHYIRDVADADALISS  203 (488)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~---~gv~~~~~~~~~~~~~~~  203 (488)
                      ++++.+++++. .+|+.++.+.+  .|.+ ++.++.||+||+|||+.+. .+.+++.+.   .++++...      ....
T Consensus        81 ~~~~~~v~~~~-~~v~~i~~~~~~~~v~~-~~~~~~~~~li~AtG~~~~-~~~i~g~~~~~~~~~~~~~~------~~~~  151 (319)
T 3cty_A           81 HAANYAKIREG-VEVRSIKKTQGGFDIET-NDDTYHAKYVIITTGTTHK-HLGVKGESEYFGKGTSYCST------CDGY  151 (319)
T ss_dssp             HHHTTSEEEET-CCEEEEEEETTEEEEEE-SSSEEEEEEEEECCCEEEC-CCCCBTTTTTBTTTEESCHH------HHGG
T ss_pred             HHHHcCCEEEE-eeEEEEEEeCCEEEEEE-CCCEEEeCEEEECCCCCcc-cCCCCChHHhCCceEEEEEe------cchh
Confidence            55667899887 68999987655  5655 5667999999999999876 344455321   34433221      1223


Q ss_pred             hhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcE
Q 011351          204 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV  283 (488)
Q Consensus       204 ~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v  283 (488)
                      ...+++++|||+|.+|+|+|..|.+.+.+|+++++.+.+..   ++    .+.+.+++.||+++++++++++..+ ++++
T Consensus       152 ~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~~---~~----~l~~~l~~~gv~i~~~~~v~~i~~~-~~~v  223 (319)
T 3cty_A          152 LFKGKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYMC---EN----AYVQEIKKRNIPYIMNAQVTEIVGD-GKKV  223 (319)
T ss_dssp             GGBTSEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCCS---CH----HHHHHHHHTTCCEECSEEEEEEEES-SSSE
T ss_pred             hcCCCeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccCC---CH----HHHHHHhcCCcEEEcCCeEEEEecC-CceE
Confidence            45689999999999999999999999999999999887643   33    3445566889999999999999864 4445


Q ss_pred             EEEEeC---CCc--EEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCccccc
Q 011351          284 AAVKLE---DGS--TIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARV  357 (488)
Q Consensus       284 ~~v~l~---~g~--~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~  357 (488)
                      ..+.+.   +|+  ++++|.||+|+|++|+.++++++++..+ +|+|.||++++|+.|+|||+|||+..+.         
T Consensus       224 ~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~---------  294 (319)
T 3cty_A          224 TGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSFLKDSGVKLDERGYIVVDSRQRTSVPGVYAAGDVTSGNF---------  294 (319)
T ss_dssp             EEEEEEETTTCCEEEECCSEEEECCCEEECCGGGTTSCCCBCTTSCBCCCTTCBCSSTTEEECSTTBTTCC---------
T ss_pred             EEEEEEEcCCCceEEEecCEEEEeeCCccChHHHhhccccccCCccEeCCCCCccCCCCEEEeecccCcch---------
Confidence            566664   665  6999999999999999999998888765 5889999999999999999999998632         


Q ss_pred             ccHHHHHHHHHHHHHHHhc
Q 011351          358 EHVDHARQSAQHCIKALLS  376 (488)
Q Consensus       358 ~~~~~A~~~g~~~a~~i~~  376 (488)
                      ..+..|..+|+.+|.+|..
T Consensus       295 ~~~~~A~~~g~~aa~~i~~  313 (319)
T 3cty_A          295 AQIASAVGDGCKAALSLYS  313 (319)
T ss_dssp             CCHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHH
Confidence            1566789999999998864

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=100.00  E-value=3.9e-36  Score=301.29  Aligned_cols=297  Identities=19%  Similarity=0.203  Sum_probs=219.7

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (488)
                      .|||||||||+||++||.+|++.+. +.+|||||+++.+.|. |.+.. +.... .....+            ....+.+
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~~-~~~Vtlie~~~~~~~~-p~~~~-v~~g~-~~~~~~------------~~~~~~~   65 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLADP-SIEVTLIEPNETYYTC-YMSNE-VIGGD-RELASL------------RVGYDGL   65 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCT-TSEEEEECSCSSEECS-TTHHH-HHHTS-SCGGGG------------EECSHHH
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcCc-CCeEEEEeCCCCCCCc-cCHHH-HhcCC-CCHHHH------------hhCHHHH
Confidence            4799999999999999999999886 6799999999876443 33321 22111 111111            2334566


Q ss_pred             HHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCC----CCcEEEecCHHHHHHHHHhhh-
Q 011351          131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY----LPGVHYIRDVADADALISSLE-  205 (488)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~----~~gv~~~~~~~~~~~~~~~~~-  205 (488)
                      ...+++++. .+|+.||++++++++.+|+++.||+||||||+.+. ++.++|..    ...++.+.+..+...+.+.+. 
T Consensus        66 ~~~gv~~i~-~~v~~id~~~~~v~~~~g~~i~yd~LviAtG~~~~-~~~i~G~~e~~~~~~~~~~~~~~~~~~~~~~l~~  143 (401)
T 3vrd_B           66 RAHGIQVVH-DSALGIDPDKKLVKTAGGAEFAYDRCVVAPGIDLL-YDKIEGYSEALAAKLPHAWKAGEQTALLRRQLES  143 (401)
T ss_dssp             HHTTCEEEC-SCEEEEETTTTEEEETTSCEEECSEEEECCCEEEC-GGGSBTCCSGGGGTSCCCSSCSHHHHHHHHHHHH
T ss_pred             HHCCCEEEE-eEEEEEEccCcEEEecccceeecceeeeccCCccc-cCCccCchhhcccCccceeccHHHHHHHHHHHHh
Confidence            778999987 58999999999999999999999999999999876 34555532    223455666666666655543 


Q ss_pred             --cCCeEEEECCC------H----HHHHHHHHHHhCC--CcEEEEecCCcCcc-cccCHHHHHHHHHHHHHcCcEEEcCC
Q 011351          206 --KAKKVVVVGGG------Y----IGMEVAAAAVGWK--LDTTIIFPENHLLQ-RLFTPSLAQRYEQLYQQNGVKFVKGA  270 (488)
Q Consensus       206 --~~~~vvVvG~G------~----~g~e~A~~l~~~g--~~v~lv~~~~~~l~-~~~~~~~~~~~~~~l~~~GV~v~~~~  270 (488)
                        .+..+++.+++      .    .+.+++..+++.+  .+|++++..+.+.. ..+++.+.+.+.+.+++.||++++++
T Consensus       144 ~~~~~~~v~~~~~~~i~~~~a~~e~~~~~a~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~  223 (401)
T 3vrd_B          144 MDDGGVVIIAPPAPPFRCPPGPYERASQIAHYLKAHKSKSKVIILDNSQTFSKQAQFTKGWERLYGFGTENALIEWHPGP  223 (401)
T ss_dssp             SCTTCEEEEECCSSSCBCTTHHHHHHHHHHHHHHHHCTTCEEEEECSSSSCTTHHHHHHHHHHHSCTTSTTCSEEEECTT
T ss_pred             cccCCcEEEecCCccEEeehHHHHHHHHHHHHHHhcCCCCEEEEEcccccccccccccHHHHHHHHHHHHhcCcEEEeCc
Confidence              33444444321      1    3456666666554  57899988887643 23566677777777889999999999


Q ss_pred             eEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeCCC-CC-CCCCCEEEEceeccc-C
Q 011351          271 SIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQ-FR-TRMPGIFAIGDVAAF-P  347 (488)
Q Consensus       271 ~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~-~~-t~~~~Ifa~GD~a~~-~  347 (488)
                      ++..++.+.+..  .+.+++|+++++|.+++++|.+|+ .+++++++..++|+|.||++ +| |++|||||+|||+.. |
T Consensus       224 ~v~~v~~~~~~~--~v~~~~g~~i~~D~vi~~~g~~~~-~~~~~~gl~~~~G~i~VD~~tl~~t~~p~VfAiGDva~~~~  300 (401)
T 3vrd_B          224 DAAVVKTDTEAM--TVETSFGETFKAAVINLIPPQRAG-KIAQSASLTNDSGWCPVDIRTFESSLQPGIHVIGDACNAAP  300 (401)
T ss_dssp             TTCEEEEETTTT--EEEETTSCEEECSEEEECCCEEEC-HHHHHTTCCCTTSSBCBCTTTCBBSSSTTEEECGGGBCCTT
T ss_pred             eEEEEEecccce--EEEcCCCcEEEeeEEEEecCcCCc-hhHhhccccccCCCEEECCCcceecCCCCEEEecccccCCC
Confidence            999988654433  578999999999999999999998 78999999888899999986 55 689999999999864 2


Q ss_pred             CccCCcccccccHHHHHHHHHHHHHHHhc
Q 011351          348 LKMYDRTARVEHVDHARQSAQHCIKALLS  376 (488)
Q Consensus       348 ~~~~~~~~~~~~~~~A~~~g~~~a~~i~~  376 (488)
                      .+        .+...|..||+.+|+||++
T Consensus       301 ~p--------k~a~~A~~qa~v~A~ni~~  321 (401)
T 3vrd_B          301 MP--------KSAYSANSQAKVAAAAVVA  321 (401)
T ss_dssp             SC--------BSHHHHHHHHHHHHHHHHH
T ss_pred             CC--------chHHHHHHHHHHHHHHHHH
Confidence            22        2556689999999999864

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=100.00  E-value=2.1e-35  Score=296.62  Aligned_cols=288  Identities=20%  Similarity=0.212  Sum_probs=221.8

Q ss_pred             CeEEEEcCchHHHHHHHHHHH---cCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHh
Q 011351           52 REFVIVGGGNAAGYAARTFVE---HGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~---~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (488)
                      ++|||||||+||+++|..|++   .|.   +|+|||+++.+.|. |.+..  .........++           .....+
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~---~V~vie~~~~~~~~-~~~~~--~~~~~~~~~~~-----------~~~~~~   64 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKA---DVKVINKSRFSYFR-PALPH--VAIGVRDVDEL-----------KVDLSE   64 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGS---EEEEEESSSEEEEC-CSSCC--CCSSCCCCCCE-----------EEEHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCC---eEEEEeCCCCceec-cchhh--cccCCcCHHHH-----------HHHHHH
Confidence            689999999999999999999   655   89999999876554 33321  11111111111           123456


Q ss_pred             HHHHCCCeEEeCCcEEEEeCCCcEEEeCCCcE----EEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhh
Q 011351          129 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKL----LKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL  204 (488)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~----i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~  204 (488)
                      ++++.+++++.+ +|+.++++.+.|++.+++.    +.||+||+|||+.+. .+.++|... ....+.+..+...+.+.+
T Consensus        65 ~~~~~gv~~~~~-~v~~i~~~~~~V~~~~g~~~~~~~~~d~lViAtG~~~~-~~~ipG~~~-~~~~~~~~~~~~~~~~~l  141 (409)
T 3h8l_A           65 ALPEKGIQFQEG-TVEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLA-TELVKGWDK-YGYSVCEPEFATKLREKL  141 (409)
T ss_dssp             HTGGGTCEEEEC-EEEEEETTTTEEEEECTTSCEEEEECSEEEECCCCEEC-GGGSBTHHH-HCEESSSTTHHHHHHHHH
T ss_pred             HHhhCCeEEEEe-eEEEEeCCCCEEEEccCCcccceeeCCEEEECCCCCcC-ccCCCChhh-cCcCcCCHHHHHHHHHHH
Confidence            667789999986 9999999999999888764    999999999999776 344454321 345566666776666655


Q ss_pred             hcC-CeEEEECCCH-------------------------HHHHHHH----HHHhCCC----cEEEEecCCcCcccccCHH
Q 011351          205 EKA-KKVVVVGGGY-------------------------IGMEVAA----AAVGWKL----DTTIIFPENHLLQRLFTPS  250 (488)
Q Consensus       205 ~~~-~~vvVvG~G~-------------------------~g~e~A~----~l~~~g~----~v~lv~~~~~~l~~~~~~~  250 (488)
                      ... ++++|||+|.                         .++|+|.    .+.+.|.    +|+++++.+ +++ .+++.
T Consensus       142 ~~~~~~~vViG~G~f~~~~~~~~~~p~~~~p~~~~~~~~~~~e~a~~~~~~l~~~g~~~~~~v~~~~~~~-~l~-~~~~~  219 (409)
T 3h8l_A          142 ESFQGGNIAIGSGPFYQGHNPKPKVPENFVPNADSACEGPVFEMSLMLHGYFKKKGMLDKVHVTVFSPGE-YLS-DLSPN  219 (409)
T ss_dssp             HHCCSEEEEEEECCBCCCCSSCCBSCTTSSCCCSCSSCHHHHHHHHHHHHHHHTTTCTTTEEEEEECSSS-SST-TBCHH
T ss_pred             HHhcCCeEEEEecccccCCCccccccccccCCCCcccCCHHHHHHHHHHHHHHHcCCCCCeEEEEEeCCc-ccc-ccCHH
Confidence            443 6777999991                         4677774    5567774    899999988 665 37889


Q ss_pred             HHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhhc--CCcccCCCEEeCC
Q 011351          251 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERV--GLNSSVGGIQVDG  328 (488)
Q Consensus       251 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~--gl~~~~g~i~vd~  328 (488)
                      +.+.+.+.+++.||+++++++|++++.+      .+.+++|+++++|.||+++|++|+ .+++++  ++..++|++.||+
T Consensus       220 ~~~~~~~~l~~~gV~~~~~~~v~~i~~~------~v~~~~g~~~~~D~vi~a~G~~~~-~~l~~~~~~l~~~~G~i~vd~  292 (409)
T 3h8l_A          220 SRKAVASIYNQLGIKLVHNFKIKEIREH------EIVDEKGNTIPADITILLPPYTGN-PALKNSTPDLVDDGGFIPTDL  292 (409)
T ss_dssp             HHHHHHHHHHHHTCEEECSCCEEEECSS------EEEETTSCEEECSEEEEECCEECC-HHHHTSCGGGSCTTSCBCBBT
T ss_pred             HHHHHHHHHHHCCCEEEcCCceEEECCC------eEEECCCCEEeeeEEEECCCCCcc-HHHHhccccCcCCCCCEEeCc
Confidence            9999999999999999999999999743      478899999999999999999998 678877  5544578899999


Q ss_pred             CCCC-CCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 011351          329 QFRT-RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  376 (488)
Q Consensus       329 ~~~t-~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~  376 (488)
                      ++|| +.|||||+|||+..+.+.        .+..|..||+.+|+||.+
T Consensus       293 ~~~~~~~~~vfa~GD~~~~~~~~--------~~~~A~~q~~~aa~~i~~  333 (409)
T 3h8l_A          293 NMVSIKYDNVYAVGDANSMTVPK--------LGYLAVMTGRIAAQHLAN  333 (409)
T ss_dssp             TSBBSSCTTEEECGGGBTTCCSC--------CHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCCCCEEEeehhccCCCCc--------HHHHHHHHHHHHHHHHHH
Confidence            9999 899999999999864322        456789999999999975

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=100.00  E-value=4.5e-36  Score=288.11  Aligned_cols=278  Identities=21%  Similarity=0.174  Sum_probs=204.6

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (488)
                      ++||+|||||+||+++|..|++.|+   +|+|||+++..... +.....+.           +..............+.+
T Consensus         2 ~~~vvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~~~~~-~~~~~~~~-----------~~~~~~~~~~~~~~~~~~   66 (297)
T 3fbs_A            2 KFDVIIIGGSYAGLSAALQLGRARK---NILLVDAGERRNRF-ASHSHGFL-----------GQDGKAPGEIIAEARRQI   66 (297)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTC---CEEEEECCCCGGGG-CSCCCSST-----------TCTTCCHHHHHHHHHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCC---CEEEEeCCCccccc-chhhcCCc-----------CCCCCCHHHHHHHHHHHH
Confidence            4799999999999999999999987   89999987532110 11111111           000000000011223334


Q ss_pred             HHC-CCeEEeCCcEEEEeCCC--cEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCC---CcEEEecCHHHHHHHHHhh
Q 011351          131 KEK-GIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL---PGVHYIRDVADADALISSL  204 (488)
Q Consensus       131 ~~~-~i~~~~~~~v~~id~~~--~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~---~gv~~~~~~~~~~~~~~~~  204 (488)
                      .+. +++++. ++|+.++++.  ..+++.+++++.||+||+|||+.+. .|.+++...   .++++..      ......
T Consensus        67 ~~~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~d~vviAtG~~~~-~~~~~g~~~~~~~~~~~~~------~~~~~~  138 (297)
T 3fbs_A           67 ERYPTIHWVE-GRVTDAKGSFGEFIVEIDGGRRETAGRLILAMGVTDE-LPEIAGLRERWGSAVFHCP------YCHGYE  138 (297)
T ss_dssp             TTCTTEEEEE-SCEEEEEEETTEEEEEETTSCEEEEEEEEECCCCEEE-CCCCBTTGGGBTTTEESCH------HHHTGG
T ss_pred             HhcCCeEEEE-eEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCCCCC-CCCCCCchhhcCCeeEEcc------cCcchh
Confidence            444 688876 5899998765  4788888988999999999999875 455555432   2333221      112223


Q ss_pred             hcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEE
Q 011351          205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA  284 (488)
Q Consensus       205 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~  284 (488)
                      ..+++++|||+|.+|+|+|..|.+.+ +|+++.+.+..    +.+    .+.+.+++.||+++. +++++++.+  +   
T Consensus       139 ~~~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~~----~~~----~~~~~l~~~gv~i~~-~~v~~i~~~--~---  203 (297)
T 3fbs_A          139 LDQGKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIVE----PDA----DQHALLAARGVRVET-TRIREIAGH--A---  203 (297)
T ss_dssp             GTTCEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTCC----CCH----HHHHHHHHTTCEEEC-SCEEEEETT--E---
T ss_pred             hcCCEEEEEecCccHHHHHHHhhhcC-cEEEEECCCCC----CCH----HHHHHHHHCCcEEEc-ceeeeeecC--C---
Confidence            46899999999999999999999999 99999887752    232    456778899999996 889999743  2   


Q ss_pred             EEEeCCCcEEEcCEEEEeecCccCChhhhhcCCcccC---C-CEEeCCCCCCCCCCEEEEceecccCCccCCcccccccH
Q 011351          285 AVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSV---G-GIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHV  360 (488)
Q Consensus       285 ~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~---g-~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~  360 (488)
                      .+.+.+|+++++|.|++++|++|+.++++++++..++   | ++.||++++|+.|||||+|||+..+.          .+
T Consensus       204 ~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~g~~~~~~~~G~~i~vd~~~~t~~~~vya~GD~~~~~~----------~~  273 (297)
T 3fbs_A          204 DVVLADGRSIALAGLFTQPKLRITVDWIEKLGCAVEEGPMGSTIVTDPMKQTTARGIFACGDVARPAG----------SV  273 (297)
T ss_dssp             EEEETTSCEEEESEEEECCEEECCCSCHHHHTCCEEEETTEEEECCCTTCBCSSTTEEECSGGGCTTC----------CH
T ss_pred             eEEeCCCCEEEEEEEEEccCcccCchhHHhcCCccccCCCCceEEeCCCCccCCCCEEEEeecCCchH----------HH
Confidence            6788999999999999999999999999999887653   4 79999999999999999999998632          55


Q ss_pred             HHHHHHHHHHHHHHhc
Q 011351          361 DHARQSAQHCIKALLS  376 (488)
Q Consensus       361 ~~A~~~g~~~a~~i~~  376 (488)
                      ..|..+|+.+|.+|..
T Consensus       274 ~~A~~~g~~aa~~i~~  289 (297)
T 3fbs_A          274 ALAVGDGAMAGAAAHR  289 (297)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHH
Confidence            6788888888888753

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=100.00  E-value=2.6e-36  Score=292.36  Aligned_cols=299  Identities=20%  Similarity=0.227  Sum_probs=202.7

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccc-cCCCCCCCCH
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTC-VGSGGERQTP  127 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  127 (488)
                      ++++||+||||||||++||.+|++.|+   +|+|||++...... +   .+.+.. .....++++++.. .+.+...+..
T Consensus         2 ~~~yDvvIIG~GpAGl~AA~~la~~g~---~v~liE~~~~gg~~-~---~G~~~~-~~~i~~~~g~~~~i~~~~l~~~~~   73 (314)
T 4a5l_A            2 SNIHDVVIIGSGPAAHTAAIYLGRSSL---KPVMYEGFMAGGVA-A---GGQLTT-TTIIENFPGFPNGIDGNELMMNMR   73 (314)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHHHTTC---CCEEECCSSGGGCC-T---TCGGGG-SSEECCSTTCTTCEEHHHHHHHHH
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCC---CEEEEecCCCCCcc-c---CCCcCC-hHHhhhccCCcccCCHHHHHHHHH
Confidence            346899999999999999999999987   89999987532111 0   011110 1111122322211 1111112234


Q ss_pred             hHHHHCCCeEEeCCcEEEEeCCC--cEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhh
Q 011351          128 EWYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE  205 (488)
Q Consensus       128 ~~~~~~~i~~~~~~~v~~id~~~--~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~  205 (488)
                      +..++.++++... .+.......  +.+.+.++.++.||+||||||+.|+. |++||.+.............+. .....
T Consensus        74 ~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~liiATG~~~~~-~~ipG~~~~~~~~~~~~~~~~~-~~~~~  150 (314)
T 4a5l_A           74 TQSEKYGTTIITE-TIDHVDFSTQPFKLFTEEGKEVLTKSVIIATGATAKR-MHVPGEDKYWQNGVSACAICDG-AVPIF  150 (314)
T ss_dssp             HHHHHTTCEEECC-CEEEEECSSSSEEEEETTCCEEEEEEEEECCCEEECC-CCCTTHHHHBTTTEESCHHHHT-TSGGG
T ss_pred             HHHhhcCcEEEEe-EEEEeecCCCceEEEECCCeEEEEeEEEEcccccccc-cCCCccccccccceeeehhhhh-hhhhc
Confidence            4566778888764 666665543  46777888899999999999998864 5555543221111111122221 12234


Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEE
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  285 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~  285 (488)
                      .+++++|||+|.+|+|+|..|.++|.+|+++++.+....   .+.   ...+.+...+++.+....+.++... +.....
T Consensus       151 ~~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~  223 (314)
T 4a5l_A          151 RNKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAFRA---SKT---MQERVLNHPKIEVIWNSELVELEGD-GDLLNG  223 (314)
T ss_dssp             TTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS---CHH---HHHHHHTCTTEEEECSEEEEEEEES-SSSEEE
T ss_pred             CCCeEEEECCChHHHHHHHHHHHhCCeeeeecccccccc---cch---hhhhhhcccceeeEeeeeeEEEEee-eeccce
Confidence            679999999999999999999999999999998876543   222   2334556678999999888888754 333333


Q ss_pred             EEe-----CCCcEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccH
Q 011351          286 VKL-----EDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHV  360 (488)
Q Consensus       286 v~l-----~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~  360 (488)
                      +.+     .+++++++|.|++++|++||+++++.. +..+++++.||+++|||+|||||+|||+..+..         .+
T Consensus       224 ~~~~~~~~~~~~~i~~d~vi~a~G~~pn~~~l~~~-~~~~~~G~iv~~~~~Ts~pgIyA~GDv~~~~~~---------~~  293 (314)
T 4a5l_A          224 AKIHNLVSGEYKVVPVAGLFYAIGHSPNSKFLGGQ-VKTADDGYILTEGPKTSVDGVFACGDVCDRVYR---------QA  293 (314)
T ss_dssp             EEEEETTTCCEEEEECSEEEECSCEEESCGGGTTS-SCBCTTSCBCCBTTBCSSTTEEECSTTTCSSCC---------CH
T ss_pred             eEEeecccccceeeccccceEecccccChhHhccc-ceEcCCeeEeCCCCccCCCCEEEEEeccCCcch---------HH
Confidence            333     345689999999999999999988654 445555667999999999999999999986542         33


Q ss_pred             HHHHHHHHHHHHHHh
Q 011351          361 DHARQSAQHCIKALL  375 (488)
Q Consensus       361 ~~A~~~g~~~a~~i~  375 (488)
                      ..|..+|+.||.++.
T Consensus       294 ~~A~~~G~~AA~~~~  308 (314)
T 4a5l_A          294 IVAAGSGCMAALSCE  308 (314)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            457778888887764

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=100.00  E-value=3.3e-35  Score=286.13  Aligned_cols=288  Identities=20%  Similarity=0.269  Sum_probs=207.7

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCccc-ccCCCCCCCCHh
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTPE  128 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  128 (488)
                      +++||+|||||+||+++|..|++.|+   +|+|||++. .... ..... .+       ..++++.. ...........+
T Consensus         7 ~~~dvvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~-~gg~-~~~~~-~~-------~~~~~~~~~~~~~~~~~~l~~   73 (325)
T 2q7v_A            7 HDYDVVIIGGGPAGLTAAIYTGRAQL---STLILEKGM-PGGQ-IAWSE-EV-------ENFPGFPEPIAGMELAQRMHQ   73 (325)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSC-TTGG-GGGCS-CB-------CCSTTCSSCBCHHHHHHHHHH
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHcCC---cEEEEeCCC-CCcc-ccccc-cc-------ccCCCCCCCCCHHHHHHHHHH
Confidence            45799999999999999999999987   899999983 1110 00000 00       01111100 000001112344


Q ss_pred             HHHHCCCeEEeCCcEEEEeCC--C---cEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCC---CcEEEecCHHHHHHH
Q 011351          129 WYKEKGIEMIYQDPVTSIDIE--K---QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL---PGVHYIRDVADADAL  200 (488)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~--~---~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~---~gv~~~~~~~~~~~~  200 (488)
                      .+++.+++++. .+|++++.+  +   ..+.+.+|+++.||+||+|||+.+. .+.+++.+.   .++++..      ..
T Consensus        74 ~~~~~gv~~~~-~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~-~~~i~g~~~~~~~~~~~~~------~~  145 (325)
T 2q7v_A           74 QAEKFGAKVEM-DEVQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGADPR-KLGIPGEDNFWGKGVSTCA------TC  145 (325)
T ss_dssp             HHHHTTCEEEE-CCEEEEEECTTSSSCCEEEEESSCEEEEEEEEECCCEEEC-CCCCTTTTTTBTTTEESCH------HH
T ss_pred             HHHHcCCEEEe-eeEEEEEeccCCCceEEEEECCCCEEEeCEEEECcCCCcC-CCCCCChhhccCceEEEec------cC
Confidence            56778999987 589999876  3   4677788888999999999999875 344555321   2333321      12


Q ss_pred             HHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCC
Q 011351          201 ISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD  280 (488)
Q Consensus       201 ~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~  280 (488)
                      ......+++++|||+|.+|+|+|..|.+.+.+|+++++.+.+..   ++.+   ..+.+++.||+++++++++++..  +
T Consensus       146 ~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---~~~~---~~~l~~~~gv~i~~~~~v~~i~~--~  217 (325)
T 2q7v_A          146 DGFFYKGKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLRA---NKVA---QARAFANPKMKFIWDTAVEEIQG--A  217 (325)
T ss_dssp             HGGGGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCS---CHHH---HHHHHTCTTEEEECSEEEEEEEE--S
T ss_pred             CHHHcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCCc---chHH---HHHHHhcCCceEecCCceEEEcc--C
Confidence            22345679999999999999999999999999999999887643   3332   22333446999999999999985  3


Q ss_pred             CcEEEEEeC---CCc--EEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCcc
Q 011351          281 GRVAAVKLE---DGS--TIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRT  354 (488)
Q Consensus       281 ~~v~~v~l~---~g~--~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~  354 (488)
                      +++..+.+.   +|+  ++++|.||+|+|++|+.+++++. +..+ +|+|.||++++|+.|||||+|||+..+.      
T Consensus       218 ~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~-~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~------  290 (325)
T 2q7v_A          218 DSVSGVKLRNLKTGEVSELATDGVFIFIGHVPNTAFVKDT-VSLRDDGYVDVRDEIYTNIPMLFAAGDVSDYIY------  290 (325)
T ss_dssp             SSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTT-SCBCTTSCBCCBTTTBCSSTTEEECSTTTCSSC------
T ss_pred             CcEEEEEEEECCCCcEEEEEcCEEEEccCCCCChHHHhhh-cccCCCccEecCCCCccCCCCEEEeecccCccH------
Confidence            455566665   675  79999999999999999998876 6654 6889999999999999999999998631      


Q ss_pred             cccccHHHHHHHHHHHHHHHhc
Q 011351          355 ARVEHVDHARQSAQHCIKALLS  376 (488)
Q Consensus       355 ~~~~~~~~A~~~g~~~a~~i~~  376 (488)
                         ..+..|..||+.+|.+|..
T Consensus       291 ---~~~~~A~~~g~~aa~~i~~  309 (325)
T 2q7v_A          291 ---RQLATSVGAGTRAAMMTER  309 (325)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHHHHHHH
Confidence               1566788999999988864

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=100.00  E-value=7.4e-36  Score=302.26  Aligned_cols=304  Identities=18%  Similarity=0.185  Sum_probs=221.3

Q ss_pred             CCeEEEEcCchHHHHHHHHHHH---cCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCH
Q 011351           51 NREFVIVGGGNAAGYAARTFVE---HGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP  127 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~---~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (488)
                      +++|||||||+||+++|..|++   .+.   +|+|||+++.+.|. |.+.. +... ......+           .....
T Consensus         4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~---~Vtlie~~~~~~~~-~~~~~-~~~g-~~~~~~~-----------~~~l~   66 (437)
T 3sx6_A            4 SAHVVILGAGTGGMPAAYEMKEALGSGH---EVTLISANDYFQFV-PSNPW-VGVG-WKERDDI-----------AFPIR   66 (437)
T ss_dssp             SCEEEEECCSTTHHHHHHHHHHHHGGGS---EEEEECSSSEEECG-GGHHH-HHHT-SSCHHHH-----------EEECH
T ss_pred             CCcEEEECCcHHHHHHHHHHhccCCCcC---EEEEEeCCCCCccc-CCccc-cccC-ccCHHHH-----------HHHHH
Confidence            5799999999999999999999   555   89999999876654 32211 1110 0000001           13456


Q ss_pred             hHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCC--CcEEEecCHHHHHHHHHhhh
Q 011351          128 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL--PGVHYIRDVADADALISSLE  205 (488)
Q Consensus       128 ~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~--~gv~~~~~~~~~~~~~~~~~  205 (488)
                      +++++.+++++. ++|+.++++.++|++++++++.||+||+|||+.+. .+.++|...  .....+.+..++..+.+.+.
T Consensus        67 ~~~~~~gv~~~~-~~v~~id~~~~~V~~~~g~~i~~d~lviAtG~~~~-~~~ipG~~~~~~~~~~~~~~~~a~~~~~~~~  144 (437)
T 3sx6_A           67 HYVERKGIHFIA-QSAEQIDAEAQNITLADGNTVHYDYLMIATGPKLA-FENVPGSDPHEGPVQSICTVDHAERAFAEYQ  144 (437)
T ss_dssp             HHHHTTTCEEEC-SCEEEEETTTTEEEETTSCEEECSEEEECCCCEEC-GGGSTTCSTTTSSEECCSSHHHHHHHHHHHH
T ss_pred             HHHHHCCCEEEE-eEEEEEEcCCCEEEECCCCEEECCEEEECCCCCcC-cccCCCCCcccCcceecccccHHHHHHHHHH
Confidence            778889999986 69999999999999999999999999999999876 355666543  24455667777766654332


Q ss_pred             ---cCCeEEEECCCHH----H--HHHH----HHHHhCCCc-----EEEEecCCcCccccc--CHHHHHHHHHHHHHcCcE
Q 011351          206 ---KAKKVVVVGGGYI----G--MEVA----AAAVGWKLD-----TTIIFPENHLLQRLF--TPSLAQRYEQLYQQNGVK  265 (488)
Q Consensus       206 ---~~~~vvVvG~G~~----g--~e~A----~~l~~~g~~-----v~lv~~~~~~l~~~~--~~~~~~~~~~~l~~~GV~  265 (488)
                         ..++++|||+|..    |  +|+|    ..+.+.|.+     |+++++.+.+....+  .++....+.+.+++.||+
T Consensus       145 ~~~~~~~~vVVGgG~~~g~~G~~~E~a~~la~~l~~~g~~~~~~~Vtlv~~~~~~~~~~l~~~~~~~~~~~~~l~~~gI~  224 (437)
T 3sx6_A          145 ALLREPGPIVIGAMAGASCFGPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTKGLKEEGIE  224 (437)
T ss_dssp             HHHHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCSCEEEEESSSSTTCTTTTCCTTHHHHHHHHHHHTTCE
T ss_pred             HHHhCCCEEEEEcCCCCCcCcHHHHHHHHHHHHHHHcCCcccCcEEEEEcCCccccccccCcchHHHHHHHHHHHHCCCE
Confidence               2556788888554    3  7777    556677764     999999987743211  135788899999999999


Q ss_pred             EEcCCeEEEEEeCCCCcEEEEEeCC-----CcEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeCCCCCC-CCCCEEE
Q 011351          266 FVKGASIKNLEAGSDGRVAAVKLED-----GSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRT-RMPGIFA  339 (488)
Q Consensus       266 v~~~~~v~~i~~~~~~~v~~v~l~~-----g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t-~~~~Ifa  339 (488)
                      +++++++++++.+  +........+     ++++++|.+++++|++++..+.+..++..++|+|.||+++|| ++|||||
T Consensus       225 ~~~~~~v~~v~~~--~v~~~~~~~~g~~~~~~~i~~D~vv~~~g~~~~~~~~~~~gl~~~~G~i~Vd~~l~t~~~~~Ifa  302 (437)
T 3sx6_A          225 AYTNCKVTKVEDN--KMYVTQVDEKGETIKEMVLPVKFGMMIPAFKGVPAVAGVEGLCNPGGFVLVDEHQRSKKYANIFA  302 (437)
T ss_dssp             EECSEEEEEEETT--EEEEEEECTTSCEEEEEEEECSEEEEECCEECCHHHHTSTTTBCTTSCBCBCTTSBBSSCTTEEE
T ss_pred             EEcCCEEEEEECC--eEEEEecccCCccccceEEEEeEEEEcCCCcCchhhhccccccCCCCcEEeChhccCCCCCCEEE
Confidence            9999999999732  2111111223     567999999999999988554444677666788999999999 9999999


Q ss_pred             EceecccCCccCCcc---cccccHHHHHHHHHHHHHHHhc
Q 011351          340 IGDVAAFPLKMYDRT---ARVEHVDHARQSAQHCIKALLS  376 (488)
Q Consensus       340 ~GD~a~~~~~~~~~~---~~~~~~~~A~~~g~~~a~~i~~  376 (488)
                      +|||+..+... +..   ....+...|..||+.+|+||..
T Consensus       303 ~GD~~~~~~~~-~~~~~~~~pk~~~~A~~qg~~aA~ni~~  341 (437)
T 3sx6_A          303 AGIAIAIPPVE-TTPVPTGAPKTGYMIESMVSAAVHNIKA  341 (437)
T ss_dssp             CGGGBCCCCSC-CCSSCCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeccCCcC-CCcCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence            99999976421 110   1133667799999999999974

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=100.00  E-value=1.4e-35  Score=286.79  Aligned_cols=285  Identities=22%  Similarity=0.301  Sum_probs=207.0

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC-CCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY-ERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (488)
                      +||+|||||+||+++|..|++.|+   +|+|||+.....+ ..+...            .+................+++
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~---~v~li~~~~gG~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~   66 (310)
T 1fl2_A            2 YDVLIVGSGPAGAAAAIYSARKGI---RTGLMGERFGGQILDTVDIE------------NYISVPKTEGQKLAGALKVHV   66 (310)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTC---CEEEECSSTTGGGGGCCEEC------------CBTTBSSEEHHHHHHHHHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCC---cEEEEeCCCCceeccccccc------------cccCcCCCCHHHHHHHHHHHH
Confidence            689999999999999999999887   8999986421100 000000            000000000000011233455


Q ss_pred             HHCCCeEEeCCcEEEEeCC-----CcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCC---CCcEEEecCHHHHHHHHH
Q 011351          131 KEKGIEMIYQDPVTSIDIE-----KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALIS  202 (488)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~-----~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~---~~gv~~~~~~~~~~~~~~  202 (488)
                      ++.+++++.+++|+.++++     ...+.+++|+++.||+||+|||+.+.. |.+++..   ..++++.      ..+..
T Consensus        67 ~~~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~-~~~~g~~~~~~~~~~~~------~~~~~  139 (310)
T 1fl2_A           67 DEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWRN-MNVPGEDQYRTKGVTYC------PHCDG  139 (310)
T ss_dssp             HTSCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEECC-CCCTTTTTTBTTTEESC------HHHHG
T ss_pred             HHcCCeEEccCEEEEEEecccCCceEEEEECCCCEEEeCEEEECcCCCcCC-CCCCChhhcccceeEEe------ccCcH
Confidence            6779999998899999875     357888888889999999999998753 4445532   1233322      22233


Q ss_pred             hhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHH-cCcEEEcCCeEEEEEeCCCC
Q 011351          203 SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDG  281 (488)
Q Consensus       203 ~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~~  281 (488)
                      ....+++++|||+|.+|+|+|..|.+.+.+|+++++.+.+.   +++    .+.+.+++ .||+++++++++++..+ ++
T Consensus       140 ~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~~----~~~~~l~~~~gv~v~~~~~v~~i~~~-~~  211 (310)
T 1fl2_A          140 PLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK---ADQ----VLQDKLRSLKNVDIILNAQTTEVKGD-GS  211 (310)
T ss_dssp             GGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCC---SCH----HHHHHHHTCTTEEEESSEEEEEEEES-SS
T ss_pred             hhcCCCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcccC---ccH----HHHHHHhhCCCeEEecCCceEEEEcC-CC
Confidence            44578999999999999999999999999999999998763   233    34555666 69999999999999854 45


Q ss_pred             cEEEEEeCC---Cc--EEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCccc
Q 011351          282 RVAAVKLED---GS--TIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA  355 (488)
Q Consensus       282 ~v~~v~l~~---g~--~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~  355 (488)
                      ++..+.+.+   |+  ++++|.|++|+|++|+++++++. +..+ +|+|.||++++|+.|+|||+|||+..+..      
T Consensus       212 ~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~-l~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~------  284 (310)
T 1fl2_A          212 KVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLEGA-VERNRMGEIIIDAKCETNVKGVFAAGDCTTVPYK------  284 (310)
T ss_dssp             SEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTT-SCBCTTSCBCCCTTCBCSSTTEEECSTTBSCSSC------
T ss_pred             cEEEEEEEECCCCcEEEEEcCEEEEeeCCccCchHHhcc-ccccCCCcEEcCCCCccCCCCEEEeecccCCcch------
Confidence            665666653   53  68999999999999999888764 6554 68899999999999999999999986532      


Q ss_pred             ccccHHHHHHHHHHHHHHHhc
Q 011351          356 RVEHVDHARQSAQHCIKALLS  376 (488)
Q Consensus       356 ~~~~~~~A~~~g~~~a~~i~~  376 (488)
                         .+..|..+|+.+|.+|..
T Consensus       285 ---~~~~A~~~g~~aa~~i~~  302 (310)
T 1fl2_A          285 ---QIIIATGEGAKASLSAFD  302 (310)
T ss_dssp             ---CHHHHHHHHHHHHHHHHH
T ss_pred             ---hhhhhHhhHHHHHHHHHH
Confidence               455688888888888864

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=100.00  E-value=1.1e-35  Score=288.85  Aligned_cols=292  Identities=18%  Similarity=0.254  Sum_probs=211.4

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCccc-ccCCCCCCCCHh
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTPE  128 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  128 (488)
                      +++||+|||||+||+++|..|++.|+   +|+|||+.... ..       +....  ....++++.. ............
T Consensus         4 ~~~~vvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~g-g~-------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~   70 (320)
T 1trb_A            4 KHSKLLILGSGPAGYTAAVYAARANL---QPVLITGMEKG-GQ-------LTTTT--EVENWPGDPNDLTGPLLMERMHE   70 (320)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTC---CCEEECCSSTT-GG-------GGGCS--BCCCSTTCCSSCBHHHHHHHHHH
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCC---cEEEEccCCCC-ce-------Eecch--hhhhCCCCCCCCCHHHHHHHHHH
Confidence            45799999999999999999999987   79999965211 00       00000  0001111110 000001112334


Q ss_pred             HHHHCCCeEEeCCcEEEEeCCCcEEE-eCCCcEEEeccEEeccCCCCCcCCCCCCCC---CCcEEEecCHHHHHHHHHhh
Q 011351          129 WYKEKGIEMIYQDPVTSIDIEKQTLI-TNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALISSL  204 (488)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~~~v~-~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~---~~gv~~~~~~~~~~~~~~~~  204 (488)
                      ++++.+++++.+ .|+.++.+.+.++ +.++..+.||+||+|||+.+. .|.+++..   ..++++..      .....+
T Consensus        71 ~~~~~~~~~~~~-~v~~i~~~~~~~~v~~~~~~~~~~~lv~AtG~~~~-~~~~~g~~~~~~~~~~~~~------~~~~~~  142 (320)
T 1trb_A           71 HATKFETEIIFD-HINKVDLQNRPFRLNGDNGEYTCDALIIATGASAR-YLGLPSEEAFKGRGVSACA------TSDGFF  142 (320)
T ss_dssp             HHHHTTCEEECC-CEEEEECSSSSEEEEESSCEEEEEEEEECCCEEEC-CCCCHHHHHTBTTTEESCH------HHHGGG
T ss_pred             HHHHCCCEEEEe-eeeEEEecCCEEEEEeCCCEEEcCEEEECCCCCcC-CCCCCChHHhCCceeEecc------cCCccc
Confidence            566789999987 5999998765433 567788999999999999865 34444321   12333221      222334


Q ss_pred             hcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEE
Q 011351          205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA  284 (488)
Q Consensus       205 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~  284 (488)
                      ..+++++|||+|.+|+|+|..|.+.+.+|+++++.+.+..   ++.+.+.+.+.+++.||++++++++++++.+ ++++.
T Consensus       143 ~~~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~-~~~v~  218 (320)
T 1trb_A          143 YRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRA---EKILIKRLMDKVENGNIILHTNRTLEEVTGD-QMGVT  218 (320)
T ss_dssp             GTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCC---CHHHHHHHHHHHHTSSEEEECSCEEEEEEEC-SSSEE
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCcccc---CHHHHHHHHHhcccCCeEEEcCceeEEEEcC-CCceE
Confidence            5789999999999999999999999999999999887653   6778888888899999999999999999864 44565


Q ss_pred             EEEeCC----C--cEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeCCCC-----CCCCCCEEEEceecccCCccCCc
Q 011351          285 AVKLED----G--STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQF-----RTRMPGIFAIGDVAAFPLKMYDR  353 (488)
Q Consensus       285 ~v~l~~----g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~-----~t~~~~Ifa~GD~a~~~~~~~~~  353 (488)
                      .+.+.+    |  +++++|.||+|+|++|+.++++ .++..++|++.||+++     +|+.|+|||+|||+..+..    
T Consensus       219 ~v~~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~~~-~~l~~~~G~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~----  293 (320)
T 1trb_A          219 GVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFE-GQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYR----  293 (320)
T ss_dssp             EEEEECCTTCCCCEEEECSEEEECSCEEESCGGGT-TTSCEETTEECCCCSSSSCTTBCSSTTEEECGGGGCSSSC----
T ss_pred             EEEEEeccCCCceEEEEcCEEEEEeCCCCChHHhc-ccccccCceEEECCCcccccccCCCCCEEEcccccCCcch----
Confidence            677654    4  5799999999999999988876 4566557889999987     7899999999999986421    


Q ss_pred             ccccccHHHHHHHHHHHHHHHhc
Q 011351          354 TARVEHVDHARQSAQHCIKALLS  376 (488)
Q Consensus       354 ~~~~~~~~~A~~~g~~~a~~i~~  376 (488)
                           .+..|..+|+.+|.+|..
T Consensus       294 -----~~~~A~~~g~~aa~~i~~  311 (320)
T 1trb_A          294 -----QAITSAGTGCMAALDAER  311 (320)
T ss_dssp             -----CHHHHHHHHHHHHHHHHH
T ss_pred             -----hhhhhhccHHHHHHHHHH
Confidence                 455678888888888753

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=100.00  E-value=7.2e-36  Score=292.15  Aligned_cols=295  Identities=18%  Similarity=0.248  Sum_probs=208.7

Q ss_pred             CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCccc-ccCCCCCCCC
Q 011351           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQT  126 (488)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  126 (488)
                      ..+++||+|||||+||+++|..|++.|+   +|+|||+++..... +.   +.+... .....++++.. ..........
T Consensus        19 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~---~v~vie~~~~~~~~-~g---g~~~~~-~~~~~~~~~~~~~~~~~~~~~~   90 (338)
T 3itj_A           19 SHVHNKVTIIGSGPAAHTAAIYLARAEI---KPILYEGMMANGIA-AG---GQLTTT-TEIENFPGFPDGLTGSELMDRM   90 (338)
T ss_dssp             --CEEEEEEECCSHHHHHHHHHHHHTTC---CCEEECCSSBTTBC-TT---CGGGGS-SEECCSTTCTTCEEHHHHHHHH
T ss_pred             CCCCCCEEEECcCHHHHHHHHHHHHCCC---CEEEEecCCCCCCC-cC---cccccc-hhhcccCCCcccCCHHHHHHHH
Confidence            4456899999999999999999999987   89999997521111 10   111100 00011111111 0001111233


Q ss_pred             HhHHHHCCCeEEeCCcEEEEeCCCcEEEe-----CCCcEEEeccEEeccCCCCCcCCCCCCCC---CCcEEEecCHHHHH
Q 011351          127 PEWYKEKGIEMIYQDPVTSIDIEKQTLIT-----NSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADAD  198 (488)
Q Consensus       127 ~~~~~~~~i~~~~~~~v~~id~~~~~v~~-----~~g~~i~yd~lVlAtG~~~~~~~~~~g~~---~~gv~~~~~~~~~~  198 (488)
                      .+++++.+++++.++ |++++.+.+.+.+     .++..+.||+||+|||+.+. .+.+++..   ..++.+.      .
T Consensus        91 ~~~~~~~gv~i~~~~-v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~~~~-~~~~~g~~~~~~~~~~~~------~  162 (338)
T 3itj_A           91 REQSTKFGTEIITET-VSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGASAK-RMHLPGEETYWQKGISAC------A  162 (338)
T ss_dssp             HHHHHHTTCEEECSC-EEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCEEEC-CCCCTTHHHHBTTTEESC------H
T ss_pred             HHHHHHcCCEEEEeE-EEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCCCcC-CCCCCCchhccCccEEEc------h
Confidence            456677899999976 9999988765444     46678999999999999775 34444421   1222221      2


Q ss_pred             HHHHh--hhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHc-CcEEEcCCeEEEE
Q 011351          199 ALISS--LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN-GVKFVKGASIKNL  275 (488)
Q Consensus       199 ~~~~~--~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~-GV~v~~~~~v~~i  275 (488)
                      .....  ...+++++|||+|.+|+|+|..|.+.+.+|+++++.+.++.       ...+.+.+.+. ||++++++.++++
T Consensus       163 ~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~-------~~~~~~~l~~~~gv~i~~~~~v~~i  235 (338)
T 3itj_A          163 VCDGAVPIFRNKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRA-------STIMQKRAEKNEKIEILYNTVALEA  235 (338)
T ss_dssp             HHHTTSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS-------CHHHHHHHHHCTTEEEECSEEEEEE
T ss_pred             hcccchhhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCC-------CHHHHHHHHhcCCeEEeecceeEEE
Confidence            22222  34689999999999999999999999999999999987765       22444555555 9999999999999


Q ss_pred             EeCCCCcEEEEEeCC-----CcEEEcCEEEEeecCccCChhhhhcCCccc-CCCEEe-CCCCCCCCCCEEEEceecccCC
Q 011351          276 EAGSDGRVAAVKLED-----GSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQV-DGQFRTRMPGIFAIGDVAAFPL  348 (488)
Q Consensus       276 ~~~~~~~v~~v~l~~-----g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~v-d~~~~t~~~~Ifa~GD~a~~~~  348 (488)
                      +.+ ++.+..|.+.+     ++++++|.||+|+|++|+..+++. ++..+ +|++.| |++++|+.|||||+|||+..+.
T Consensus       236 ~~~-~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~-~l~~~~~G~i~v~~~~~~t~~~~vya~GD~~~~~~  313 (338)
T 3itj_A          236 KGD-GKLLNALRIKNTKKNEETDLPVSGLFYAIGHTPATKIVAG-QVDTDEAGYIKTVPGSSLTSVPGFFAAGDVQDSKY  313 (338)
T ss_dssp             EES-SSSEEEEEEEETTTTEEEEEECSEEEECSCEEECCGGGBT-TBCBCTTSCBCCCTTSSBCSSTTEEECGGGGCSSC
T ss_pred             Ecc-cCcEEEEEEEECCCCceEEEEeCEEEEEeCCCCChhHhhC-ceEecCCCcEEEcCcccccCCCCEEEeeccCCCCc
Confidence            865 45566677765     467999999999999999988876 78765 677874 8899999999999999998432


Q ss_pred             ccCCcccccccHHHHHHHHHHHHHHHhc
Q 011351          349 KMYDRTARVEHVDHARQSAQHCIKALLS  376 (488)
Q Consensus       349 ~~~~~~~~~~~~~~A~~~g~~~a~~i~~  376 (488)
                               ..+..|..+|+.+|.+|..
T Consensus       314 ---------~~~~~A~~~g~~aa~~i~~  332 (338)
T 3itj_A          314 ---------RQAITSAGSGCMAALDAEK  332 (338)
T ss_dssp             ---------CCHHHHHHHHHHHHHHHHH
T ss_pred             ---------cceeeehhhhHHHHHHHHH
Confidence                     2556788889998888864

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=100.00  E-value=4.9e-35  Score=283.32  Aligned_cols=289  Identities=21%  Similarity=0.217  Sum_probs=206.1

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEE-EcCCCCCCCCCCCCCccccCCCCCCCCCCCCcc-cccCCCCCCCCH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCI-VSKEAYAPYERPALTKGYLFPLDKKPARLPGFH-TCVGSGGERQTP  127 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~l-ie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  127 (488)
                      .++||+|||||+||++||..|++.|+   +|+| +|++.. ...       +...  .....++++. ............
T Consensus         3 ~~~~vvIIG~G~aGl~aA~~l~~~g~---~v~li~e~~~~-gG~-------~~~~--~~~~~~~~~~~~~~~~~~~~~~~   69 (315)
T 3r9u_A            3 AMLDVAIIGGGPAGLSAGLYATRGGL---KNVVMFEKGMP-GGQ-------ITSS--SEIENYPGVAQVMDGISFMAPWS   69 (315)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHTC---SCEEEECSSST-TGG-------GGGC--SCBCCSTTCCSCBCHHHHHHHHH
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCC---CeEEEEeCCCC-Cce-------eeee--ceeccCCCCCCCCCHHHHHHHHH
Confidence            46899999999999999999999987   7999 998422 110       0000  0000111111 000001112234


Q ss_pred             hHHHHCCCeEEeCCcEEEEeCCC----cEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCC---CcEEEecCHHHHHHH
Q 011351          128 EWYKEKGIEMIYQDPVTSIDIEK----QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL---PGVHYIRDVADADAL  200 (488)
Q Consensus       128 ~~~~~~~i~~~~~~~v~~id~~~----~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~---~gv~~~~~~~~~~~~  200 (488)
                      +++++.+++++.+ +|..+ ++.    ..+.+..+.++.||+||+|||+.+. .|..++...   .++++.      ...
T Consensus        70 ~~~~~~~v~~~~~-~v~~i-~~~~~~~~~v~~~~~~~~~~d~lvlAtG~~~~-~~~~~g~~~~~~~~~~~~------~~~  140 (315)
T 3r9u_A           70 EQCMRFGLKHEMV-GVEQI-LKNSDGSFTIKLEGGKTELAKAVIVCTGSAPK-KAGFKGEDEFFGKGVSTC------ATC  140 (315)
T ss_dssp             HHHTTTCCEEECC-CEEEE-EECTTSCEEEEETTSCEEEEEEEEECCCEEEC-CCCCBTTTTTBTTTEESC------HHH
T ss_pred             HHHHHcCcEEEEE-EEEEE-ecCCCCcEEEEEecCCEEEeCEEEEeeCCCCC-CCCCCChhhcCCCeEEee------ecc
Confidence            4556679999986 89888 444    3421433328999999999999775 455565433   333322      222


Q ss_pred             HHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCC
Q 011351          201 ISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD  280 (488)
Q Consensus       201 ~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~  280 (488)
                      ......+++++|+|+|.+|+|+|..|.+.+.+|+++++.+.+..   ++.   .+.+.+++.||++++++.+++++.+ +
T Consensus       141 ~~~~~~~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~~~---~~~---~~~~~~~~~gv~~~~~~~v~~i~~~-~  213 (315)
T 3r9u_A          141 DGFFYKNKEVAVLGGGDTALEEALYLANICSKIYLIHRRDEFRA---APS---TVEKVKKNEKIELITSASVDEVYGD-K  213 (315)
T ss_dssp             HGGGGTTSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSCBS---CHH---HHHHHHHCTTEEEECSCEEEEEEEE-T
T ss_pred             cccccCcCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCCCC---CHH---HHHHHHhcCCeEEEeCcEEEEEEcC-C
Confidence            33345789999999999999999999999999999999987732   333   3445567889999999999999864 4


Q ss_pred             CcEEEEEeC--CCc--EEEcCEEEEeecCccCChhhhh---cC-Cccc-CCCEEeCCCCCCCCCCEEEEceecccCCccC
Q 011351          281 GRVAAVKLE--DGS--TIDADTIVIGIGAKPTVSPFER---VG-LNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMY  351 (488)
Q Consensus       281 ~~v~~v~l~--~g~--~i~~D~vi~a~G~~p~~~~~~~---~g-l~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~  351 (488)
                      +++..+.+.  +|+  ++++|.||+++|++|+..+++.   +| +..+ +|+|.||++++|+.|||||+|||+..+.   
T Consensus       214 ~~~~~v~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~g~l~~~~~g~i~vd~~~~t~~~~v~a~GD~~~~~~---  290 (315)
T 3r9u_A          214 MGVAGVKVKLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDLKMQTSVAGLFAAGDLRKDAP---  290 (315)
T ss_dssp             TEEEEEEEECTTSCEEEECCSCEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTTCBCSSTTEEECGGGBTTCC---
T ss_pred             CcEEEEEEEcCCCCeEEeecCeEEEEEcCCCCchhhhcccccceeeecCCCcEEeCCCcccCCCCEEEeecccCCch---
Confidence            455566665  776  7999999999999999988766   54 7765 5889999999999999999999996432   


Q ss_pred             CcccccccHHHHHHHHHHHHHHHhc
Q 011351          352 DRTARVEHVDHARQSAQHCIKALLS  376 (488)
Q Consensus       352 ~~~~~~~~~~~A~~~g~~~a~~i~~  376 (488)
                            ..+..|..+|+.+|.+|..
T Consensus       291 ------~~~~~A~~~g~~aa~~i~~  309 (315)
T 3r9u_A          291 ------KQVICAAGDGAVAALSAMA  309 (315)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHH
T ss_pred             ------hhhhhHHhhHHHHHHHHHH
Confidence                  2566788999999988863

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=100.00  E-value=1.2e-35  Score=286.47  Aligned_cols=285  Identities=14%  Similarity=0.125  Sum_probs=195.5

Q ss_pred             CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCH
Q 011351           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP  127 (488)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (488)
                      .|+++||+||||||||++||.+|++.|+   +|+|||++.....- .....++...        ++.   ...+......
T Consensus         3 ~M~~yDVvIIGaGpAGlsAA~~lar~g~---~v~lie~~~~gg~~-~~~~~~~~~~--------~~~---~~~~~~~~~~   67 (304)
T 4fk1_A            3 AMKYIDCAVIGAGPAGLNASLVLGRARK---QIALFDNNTNRNRV-TQNSHGFITR--------DGI---KPEEFKEIGL   67 (304)
T ss_dssp             ---CEEEEEECCSHHHHHHHHHHHHTTC---CEEEEECSCCGGGG-SSCBCCSTTC--------TTB---CHHHHHHHHH
T ss_pred             CCCCcCEEEECCCHHHHHHHHHHHHCCC---CEEEEeCCCCCCee-eeecCCccCC--------CCC---CHHHHHHHHH
Confidence            4667999999999999999999999987   89999987431100 0000001000        000   0000000111


Q ss_pred             hHHHHCC-CeEEeCCcEEEEeCC---CcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCC---CcEEEecCHHHHHHH
Q 011351          128 EWYKEKG-IEMIYQDPVTSIDIE---KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL---PGVHYIRDVADADAL  200 (488)
Q Consensus       128 ~~~~~~~-i~~~~~~~v~~id~~---~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~---~gv~~~~~~~~~~~~  200 (488)
                      +...+++ +.+.. ..+..++..   .+++.+.+|+++.||+||||||+.|+ .|+++|.+.   .++.+      +...
T Consensus        68 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~g~~~~a~~liiATGs~p~-~p~i~G~~~~~~~~v~~------~~~~  139 (304)
T 4fk1_A           68 NEVMKYPSVHYYE-KTVVMITKQSTGLFEIVTKDHTKYLAERVLLATGMQEE-FPSIPNVREYYGKSLFS------CPYC  139 (304)
T ss_dssp             HHHTTSTTEEEEE-CCEEEEEECTTSCEEEEETTCCEEEEEEEEECCCCEEE-CCSCTTHHHHBTTTEES------CHHH
T ss_pred             HHHHhcCCEEEEe-eEEEEeeecCCCcEEEEECCCCEEEeCEEEEccCCccc-cccccCccccccceeee------cccc
Confidence            2223333 45554 456555432   35788899999999999999999886 455555221   12222      2223


Q ss_pred             HHhhhcCCeEEEECCCH-HHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCC
Q 011351          201 ISSLEKAKKVVVVGGGY-IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS  279 (488)
Q Consensus       201 ~~~~~~~~~vvVvG~G~-~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~  279 (488)
                      ......+++++|||+|. .+.|+|..+...+.+|+++.+.+.+..         .+.+.|++.|++++.+. ++.+.. +
T Consensus       140 ~~~~~~~~~~~VIggG~~~~~e~a~~~~~~~~~v~i~~~~~~~~~---------~~~~~l~~~g~~~~~~~-v~~~~~-~  208 (304)
T 4fk1_A          140 DGWELKDQPLIIISENEDHTLHMTKLVYNWSTDLVIATNGNELSQ---------TIMDELSNKNIPVITES-IRTLQG-E  208 (304)
T ss_dssp             HSGGGTTSCEEEECCSHHHHHHHHHHHTTTCSCEEEECSSCCCCH---------HHHHHHHTTTCCEECSC-EEEEES-G
T ss_pred             chhHhcCCceeeecCCCchhhhHHHHHHhCCceEEEEeccccchh---------hhhhhhhccceeEeeee-EEEeec-C
Confidence            33345677888888876 467899999899999999988765432         34566888999999874 777763 4


Q ss_pred             CCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccc
Q 011351          280 DGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVE  358 (488)
Q Consensus       280 ~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~  358 (488)
                      ++.+..+.+++|+++++|.+++++|.+|+..+++++|++.+ +|+|.||+++|||+|||||+|||+..+..         
T Consensus       209 ~~~~~~v~~~~g~~i~~~~~vi~~g~~~~~~~~~~~g~~~~~~G~I~vd~~~~Ts~p~IyA~GDv~~~~~~---------  279 (304)
T 4fk1_A          209 GGYLKKVEFHSGLRIERAGGFIVPTFFRPNQFIEQLGCELQSNGTFVIDDFGRTSEKNIYLAGETTTQGPS---------  279 (304)
T ss_dssp             GGCCCEEEETTSCEECCCEEEECCEEECSSCHHHHTTCCCCTTSSSCSSTTCBCSSTTEEECSHHHHTSCC---------
T ss_pred             CCeeeeeeccccceeeecceeeeeccccCChhhhhcCeEECCCCCEEECcCCccCCCCEEEEeccCCCcch---------
Confidence            56667899999999999999998888887789999999876 56799999999999999999999975432         


Q ss_pred             cHHHHHHHHHHHHHHHh
Q 011351          359 HVDHARQSAQHCIKALL  375 (488)
Q Consensus       359 ~~~~A~~~g~~~a~~i~  375 (488)
                      .+..|..+|+.||.+|.
T Consensus       280 ~~~~A~~~G~~AA~~i~  296 (304)
T 4fk1_A          280 SLIIAASQGNKAAIAIN  296 (304)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            34557778888887764

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=100.00  E-value=4.4e-35  Score=283.38  Aligned_cols=288  Identities=18%  Similarity=0.233  Sum_probs=207.7

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCccc-ccCCCCCCCCHhHH
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTPEWY  130 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  130 (488)
                      +||+|||||+||+++|..|++.|+.  +|+|||++.....  ..... ..       ..++++.. ...........+++
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~--~v~lie~~~~gg~--~~~~~-~~-------~~~~~~~~~~~~~~~~~~l~~~~   69 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRGGVK--NAVLFEKGMPGGQ--ITGSS-EI-------ENYPGVKEVVSGLDFMQPWQEQC   69 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCS--SEEEECSSSTTCG--GGGCS-CB-------CCSTTCCSCBCHHHHHHHHHHHH
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCC--cEEEEcCCCCCcc--ccccc-cc-------ccCCCCcccCCHHHHHHHHHHHH
Confidence            6899999999999999999998762  7999998632110  00000 00       00111100 00000011223445


Q ss_pred             HHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCC---CcEEEecCHHHHHHHHHhhh
Q 011351          131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL---PGVHYIRDVADADALISSLE  205 (488)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~---~gv~~~~~~~~~~~~~~~~~  205 (488)
                      ++.+++++. ++|+.++.+.+  .+.+.+++++.||+||+|||+.+. .|.+++...   ++++++.      .......
T Consensus        70 ~~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~-~~~~~g~~~~~~~~~~~~~------~~~~~~~  141 (311)
T 2q0l_A           70 FRFGLKHEM-TAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPK-RTGIKGESEYWGKGVSTCA------TCDGFFY  141 (311)
T ss_dssp             HTTSCEEEC-SCEEEEEEETTEEEEEETTSCEEEEEEEEECCCEEEC-CCCCBTHHHHBTTTEESCH------HHHGGGG
T ss_pred             HHcCCEEEE-EEEEEEEEcCCEEEEEEcCCCEEECCEEEECCCCCCC-CCCCCChhhccCCcEEEee------cCChhhc
Confidence            667999988 78999987766  677788888999999999998775 344444211   3343322      1222345


Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHH-HcCcEEEcCCeEEEEEeCCCCcEE
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ-QNGVKFVKGASIKNLEAGSDGRVA  284 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~-~~GV~v~~~~~v~~i~~~~~~~v~  284 (488)
                      .+++++|||+|.+|+|+|..|.+.+.+|+++++.+.+.   .++.    +.+.+. +.||++++++.++++..+ ++.+.
T Consensus       142 ~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~~~----~~~~l~~~~gv~v~~~~~v~~i~~~-~~~v~  213 (311)
T 2q0l_A          142 KNKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFR---CAPI----TLEHAKNNDKIEFLTPYVVEEIKGD-ASGVS  213 (311)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCC---SCHH----HHHHHHTCTTEEEETTEEEEEEEEE-TTEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccC---CCHH----HHHHHhhCCCeEEEeCCEEEEEECC-CCcEe
Confidence            67999999999999999999999999999999988764   2443    333444 479999999999999854 34444


Q ss_pred             EEEeC---CCc--EEEcCEEEEeecCccCChhhhhcC----Cccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCcc
Q 011351          285 AVKLE---DGS--TIDADTIVIGIGAKPTVSPFERVG----LNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRT  354 (488)
Q Consensus       285 ~v~l~---~g~--~i~~D~vi~a~G~~p~~~~~~~~g----l~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~  354 (488)
                      .+.+.   +|+  ++++|.||+|+|++|++++++..+    +..+ +|+|.||++++|+.|||||+|||+..+.      
T Consensus       214 ~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~g~~~~l~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~------  287 (311)
T 2q0l_A          214 SLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLCKCDEYGSIVVDFSMKTNVQGLFAAGDIRIFAP------  287 (311)
T ss_dssp             EEEEEETTTCCEEEEECSEEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTTCBCSSTTEEECSTTBTTCC------
T ss_pred             EEEEEecCCCceEEEecCEEEEEecCccChhhhhcccccceeEeccCCCEEeCCccccCCCCeEEcccccCcch------
Confidence            56665   675  799999999999999999988775    7654 6889999999999999999999998631      


Q ss_pred             cccccHHHHHHHHHHHHHHHhc
Q 011351          355 ARVEHVDHARQSAQHCIKALLS  376 (488)
Q Consensus       355 ~~~~~~~~A~~~g~~~a~~i~~  376 (488)
                         ..+..|..||+.+|.+|..
T Consensus       288 ---~~~~~A~~~g~~aa~~i~~  306 (311)
T 2q0l_A          288 ---KQVVCAASDGATAALSVIS  306 (311)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHhHHHHHHHHHH
Confidence               2566789999999998864

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=100.00  E-value=2.3e-34  Score=281.13  Aligned_cols=300  Identities=19%  Similarity=0.251  Sum_probs=203.4

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCccc-ccCCCCCCCCHh
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTPE  128 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  128 (488)
                      ++++|+|||||++|+++|..|++.|+   +|+|||+....... +  ...+....  ....++++.. .........+.+
T Consensus         7 ~~~~vvIIG~G~aGl~~A~~l~~~g~---~v~lie~~~~~~~~-~--gg~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~   78 (333)
T 1vdc_A            7 HNTRLCIVGSGPAAHTAAIYAARAEL---KPLLFEGWMANDIA-P--GGQLTTTT--DVENFPGFPEGILGVELTDKFRK   78 (333)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTC---CCEEECCSSBTTBC-T--TCGGGGCS--EECCSTTCTTCEEHHHHHHHHHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCC---eEEEEeccCccccC-C--Cceeeecc--ccccCCCCccCCCHHHHHHHHHH
Confidence            45799999999999999999999987   89999982100000 0  00010000  0001111110 000001112334


Q ss_pred             HHHHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCC-CcEEEecCHHHHHHHHHhh-
Q 011351          129 WYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL-PGVHYIRDVADADALISSL-  204 (488)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~-~gv~~~~~~~~~~~~~~~~-  204 (488)
                      ++++.+++++.++ |+.++.+.+  +|++ ++..+.||+||+|||+.+.. +.+++... .+.+..+.+.......... 
T Consensus        79 ~~~~~gv~~~~~~-v~~i~~~~~~~~v~~-~~~~~~~~~vv~A~G~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  155 (333)
T 1vdc_A           79 QSERFGTTIFTET-VTKVDFSSKPFKLFT-DSKAILADAVILAIGAVAKR-LSFVGSGEVLGGFWNRGISACAVCDGAAP  155 (333)
T ss_dssp             HHHHTTCEEECCC-CCEEECSSSSEEEEC-SSEEEEEEEEEECCCEEECC-CCCBTCSSSSSCCBTTTEESCHHHHTTSG
T ss_pred             HHHHCCCEEEEeE-EEEEEEcCCEEEEEE-CCcEEEcCEEEECCCCCcCC-CCCCCccccccccccCcEEEeccCccchh
Confidence            5667899999874 889987655  6666 77789999999999998763 44555432 1111111111111222222 


Q ss_pred             -hcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCC-c
Q 011351          205 -EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG-R  282 (488)
Q Consensus       205 -~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~-~  282 (488)
                       ..+++++|||+|.+|+|+|..|.+.+.+|+++++.+.+..   .+.+   ..+.+++.||++++++++++++.++++ +
T Consensus       156 ~~~~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~---~~~~---~~~~~~~~gv~i~~~~~v~~i~~~~~~~~  229 (333)
T 1vdc_A          156 IFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA---SKIM---QQRALSNPKIDVIWNSSVVEAYGDGERDV  229 (333)
T ss_dssp             GGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS---CHHH---HHHHHTCTTEEEECSEEEEEEEESSSSSS
T ss_pred             hcCCCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCCc---cHHH---HHHHHhCCCeeEecCCceEEEeCCCCccc
Confidence             5689999999999999999999999999999999987643   2222   224456789999999999999864321 5


Q ss_pred             EEEEEeC---CC--cEEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCCC-CCCCCCCEEEEceecccCCccCCccc
Q 011351          283 VAAVKLE---DG--STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQ-FRTRMPGIFAIGDVAAFPLKMYDRTA  355 (488)
Q Consensus       283 v~~v~l~---~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~-~~t~~~~Ifa~GD~a~~~~~~~~~~~  355 (488)
                      +..+.+.   +|  +++++|.||+|+|++|+.++++ .++..+ +|+|.||++ ++|+.|+|||+|||+..+..      
T Consensus       230 v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~-~~l~~~~~G~i~vd~~~~~t~~~~vya~GD~~~~~~~------  302 (333)
T 1vdc_A          230 LGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATKFLD-GGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKYR------  302 (333)
T ss_dssp             EEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGT-TSSCBCTTSCBCCCTTSCBCSSTTEEECGGGGCSSCC------
T ss_pred             eeeEEEEecCCCceEEEecCEEEEEeCCccchHHhh-ccccccCCCCEEechhhcccCCCCEEEeeeccCCCch------
Confidence            5556664   45  5799999999999999998876 467655 688999997 58999999999999986421      


Q ss_pred             ccccHHHHHHHHHHHHHHHhc
Q 011351          356 RVEHVDHARQSAQHCIKALLS  376 (488)
Q Consensus       356 ~~~~~~~A~~~g~~~a~~i~~  376 (488)
                         .+..|..+|+.+|.+|..
T Consensus       303 ---~~~~A~~~g~~aa~~i~~  320 (333)
T 1vdc_A          303 ---QAITAAGTGCMAALDAEH  320 (333)
T ss_dssp             ---CHHHHHHHHHHHHHHHHH
T ss_pred             ---hHHHHHHhHHHHHHHHHH
Confidence               455677888888887753

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=100.00  E-value=2.6e-34  Score=283.10  Aligned_cols=300  Identities=16%  Similarity=0.225  Sum_probs=195.9

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccC-------CCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVG-------SGGE  123 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~  123 (488)
                      +++|+|||||++|+++|..|++.|+   +|+|||+++.......................++++.....       ....
T Consensus         3 ~~~vvIIG~G~aGl~~A~~l~~~g~---~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (357)
T 4a9w_A            3 SVDVVVIGGGQSGLSAGYFLRRSGL---SYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVL   79 (357)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHSSC---CEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCC---CEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHH
Confidence            4799999999999999999999987   89999998753210000000000000000000111100000       0001


Q ss_pred             CCCHhHHHHCCCeEEeCCcEEEEeCCCcE---EEeCCCcEEEeccEEeccCCCCC-cCCCCCCCC-CCcE-EEecCHHHH
Q 011351          124 RQTPEWYKEKGIEMIYQDPVTSIDIEKQT---LITNSGKLLKYGSLIVATGCTAS-RFPEKIGGY-LPGV-HYIRDVADA  197 (488)
Q Consensus       124 ~~~~~~~~~~~i~~~~~~~v~~id~~~~~---v~~~~g~~i~yd~lVlAtG~~~~-~~~~~~g~~-~~gv-~~~~~~~~~  197 (488)
                      ....+++++.+++++.+++|++++.+++.   |++.++ ++.||+||+|||.... ..|.++|.. ..+. .+.....+ 
T Consensus        80 ~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vV~AtG~~~~~~~~~~~g~~~~~~~~~~~~~~~~-  157 (357)
T 4a9w_A           80 AYLAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGR-QWLARAVISATGTWGEAYTPEYQGLESFAGIQLHSAHYST-  157 (357)
T ss_dssp             HHHHHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSC-EEEEEEEEECCCSGGGBCCCCCTTGGGCCSEEEEGGGCCC-
T ss_pred             HHHHHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCC-EEEeCEEEECCCCCCCCCCCCCCCccccCCcEEEeccCCC-
Confidence            12234456779999999999999987765   667777 7999999999996432 134444432 1221 11111111 


Q ss_pred             HHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecC-CcCccccc-CHHHHHHHHHHHH---------------
Q 011351          198 DALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE-NHLLQRLF-TPSLAQRYEQLYQ---------------  260 (488)
Q Consensus       198 ~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~-~~~l~~~~-~~~~~~~~~~~l~---------------  260 (488)
                          .....+++++|||+|.+|+|+|..|.+.+ +|+++.+. +.+++..+ +..+.+.+.+.+.               
T Consensus       158 ----~~~~~~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (357)
T 4a9w_A          158 ----PAPFAGMRVAIIGGGNSGAQILAEVSTVA-ETTWITQHEPAFLADDVDGRVLFERATERWKAQQEGREPDLPPGGF  232 (357)
T ss_dssp             ----SGGGTTSEEEEECCSHHHHHHHHHHTTTS-EEEEECSSCCCBCCTTCCTHHHHTC---------------------
T ss_pred             ----hhhcCCCEEEEECCCcCHHHHHHHHHhhC-CEEEEECCCCeecchhhcCccHHHHHHHHHhccccccCCCcccccc
Confidence                11236799999999999999999999998 69999988 55555432 2333332222222               


Q ss_pred             -------------HcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeC
Q 011351          261 -------------QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVD  327 (488)
Q Consensus       261 -------------~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd  327 (488)
                                   +.|+ +..+..+++++..      .+.+++|+++++|.||+|+|++|++++++++++..++|+|.||
T Consensus       233 ~~~~~~~~~~~~~~~g~-i~~~~~v~~~~~~------~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~G~i~vd  305 (357)
T 4a9w_A          233 GDIVMVPPVLDARARGV-LAAVPPPARFSPT------GMQWADGTERAFDAVIWCTGFRPALSHLKGLDLVTPQGQVEVD  305 (357)
T ss_dssp             -CBCCCHHHHHHHHTTC-CCEECCCSEEETT------EEECTTSCEEECSEEEECCCBCCCCGGGTTTTCBCTTSCBCBC
T ss_pred             cCcccChhHHHHHhcCc-eEEecCcceEeCC------eeEECCCCEecCCEEEECCCcCCCCcccCcccccCCCCCcccc
Confidence                         3444 5555667777632      5889999999999999999999999999999999667889999


Q ss_pred             CC--CCCCCCCEEEEc--eecccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 011351          328 GQ--FRTRMPGIFAIG--DVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  376 (488)
Q Consensus       328 ~~--~~t~~~~Ifa~G--D~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~  376 (488)
                      ++  ++|+.|||||+|  ||+..+..         .+..|..+|+.+|++|..
T Consensus       306 ~~~l~~t~~~~vya~Gd~d~~~~~~~---------~~~~A~~~g~~~a~~i~~  349 (357)
T 4a9w_A          306 GSGLRALAVPSVWLLGYGDWNGMASA---------TLIGVTRYAREAVRQVTA  349 (357)
T ss_dssp             TTSCBBSSCTTEEECSSCGGGSTTCS---------STTTHHHHHHHHHHHHHH
T ss_pred             CCcccCCCCCCeEEeccccccccchh---------hhhhhHHHHHHHHHHHHH
Confidence            99  899999999999  55552211         223377788888888764

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=100.00  E-value=6.6e-34  Score=278.10  Aligned_cols=288  Identities=18%  Similarity=0.301  Sum_probs=201.2

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCccc-ccCCCCCCCCH
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTP  127 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  127 (488)
                      ++++||+|||||+||+++|..|++.|+   +|+|||+.....        .+....  ....++++.. ...........
T Consensus        12 ~~~~~vvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~gg--------~~~~~~--~~~~~~~~~~~~~~~~~~~~l~   78 (335)
T 2a87_A           12 HPVRDVIVIGSGPAGYTAALYAARAQL---APLVFEGTSFGG--------ALMTTT--DVENYPGFRNGITGPELMDEMR   78 (335)
T ss_dssp             CCCEEEEEECCHHHHHHHHHHHHHTTC---CCEEECCSSCSC--------GGGSCS--CBCCSTTCTTCBCHHHHHHHHH
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCC---eEEEEecCCCCC--------ceeccc--hhhhcCCCCCCCCHHHHHHHHH
Confidence            456899999999999999999999987   899999752110        011000  0001111110 00000112233


Q ss_pred             hHHHHCCCeEEeCCcEEEEeCCC-cEE-EeCCCcEEEeccEEeccCCCCCcCCCCCCCC---CCcEEEecCHHHHHHHHH
Q 011351          128 EWYKEKGIEMIYQDPVTSIDIEK-QTL-ITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALIS  202 (488)
Q Consensus       128 ~~~~~~~i~~~~~~~v~~id~~~-~~v-~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~---~~gv~~~~~~~~~~~~~~  202 (488)
                      +++++.+++++.++ |++++..+ .++ .+.+++++.||+||+|||+.+. .|.+++..   ..+++..      .....
T Consensus        79 ~~~~~~~v~~~~~~-v~~i~~~~~~~v~~~~~g~~~~~d~lviAtG~~~~-~~~i~g~~~~~~~~~~~~------~~~~~  150 (335)
T 2a87_A           79 EQALRFGADLRMED-VESVSLHGPLKSVVTADGQTHRARAVILAMGAAAR-YLQVPGEQELLGRGVSSC------ATCDG  150 (335)
T ss_dssp             HHHHHTTCEEECCC-EEEEECSSSSEEEEETTSCEEEEEEEEECCCEEEC-CCCCTHHHHTBTTTEESC------HHHHG
T ss_pred             HHHHHcCCEEEEee-EEEEEeCCcEEEEEeCCCCEEEeCEEEECCCCCcc-CCCCCchHhccCCceEEe------eccch
Confidence            45667899999874 99998732 467 7788888999999999999775 34444421   1223322      12223


Q ss_pred             hhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCc
Q 011351          203 SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR  282 (488)
Q Consensus       203 ~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~  282 (488)
                      .+..+++++|||+|.+|+|+|..|.+.+.+|+++++.+.+..   .+.+   ..+.+++.||++++++++++++.+  +.
T Consensus       151 ~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~~---~~~~---~~~~~~~~gV~v~~~~~v~~i~~~--~~  222 (335)
T 2a87_A          151 FFFRDQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFRA---SKIM---LDRARNNDKIRFLTNHTVVAVDGD--TT  222 (335)
T ss_dssp             GGGTTCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCSS---CTTH---HHHHHHCTTEEEECSEEEEEEECS--SS
T ss_pred             hhcCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCCc---cHHH---HHHHhccCCcEEEeCceeEEEecC--Cc
Confidence            345689999999999999999999999999999999887653   2222   124456789999999999999854  23


Q ss_pred             EEEEEeC---CC--cEEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCCC-CCCCCCCEEEEceecccCCccCCccc
Q 011351          283 VAAVKLE---DG--STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQ-FRTRMPGIFAIGDVAAFPLKMYDRTA  355 (488)
Q Consensus       283 v~~v~l~---~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~-~~t~~~~Ifa~GD~a~~~~~~~~~~~  355 (488)
                      +..+.+.   +|  +++++|.||+|+|++|++++++ .++..+ +|+|.||++ ++|+.|||||+|||+..+..      
T Consensus       223 ~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~-~~l~~~~~G~i~vd~~~~~t~~~~iya~GD~~~~~~~------  295 (335)
T 2a87_A          223 VTGLRVRDTNTGAETTLPVTGVFVAIGHEPRSGLVR-EAIDVDPDGYVLVQGRTTSTSLPGVFAAGDLVDRTYR------  295 (335)
T ss_dssp             CCEEEEEEETTSCCEEECCSCEEECSCEEECCTTTB-TTBCBCTTSCBCCSTTSSBCSSTTEEECGGGTCCSCC------
T ss_pred             EeEEEEEEcCCCceEEeecCEEEEccCCccChhHhh-cccccCCCccEEeCCCCCccCCCCEEEeeecCCccHH------
Confidence            3344443   45  5799999999999999988876 466654 688999985 68999999999999986421      


Q ss_pred             ccccHHHHHHHHHHHHHHHh
Q 011351          356 RVEHVDHARQSAQHCIKALL  375 (488)
Q Consensus       356 ~~~~~~~A~~~g~~~a~~i~  375 (488)
                         .+..|..+|+.+|.++.
T Consensus       296 ---~~~~A~~~g~~aA~~i~  312 (335)
T 2a87_A          296 ---QAVTAAGSGCAAAIDAE  312 (335)
T ss_dssp             ---CHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHhHHHHHHHHH
Confidence               44557778888887775

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=100.00  E-value=1.2e-33  Score=279.90  Aligned_cols=307  Identities=18%  Similarity=0.217  Sum_probs=206.5

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC------CCCCCCCCCCcccc---CCCCCC----CCCCCCccc-
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA------YAPYERPALTKGYL---FPLDKK----PARLPGFHT-  116 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~------~~~~~~~~l~~~~~---~~~~~~----~~~~~~~~~-  116 (488)
                      +++|+|||||+||+++|..|++.|+ . +|+|||+++      ..+.....+...+.   +.....    ....+.+.. 
T Consensus         4 ~~~vvIIGaG~aGl~aA~~l~~~g~-~-~v~lie~~~~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~   81 (369)
T 3d1c_A            4 HHKVAIIGAGAAGIGMAITLKDFGI-T-DVIILEKGTVGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTFN   81 (369)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-C-CEEEECSSSTTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHHHHC
T ss_pred             cCcEEEECcCHHHHHHHHHHHHcCC-C-cEEEEecCCCCCccccCcccccccCcchhcccCCchhhhhcccccccccccc
Confidence            5799999999999999999999875 2 799999986      11110000000000   000000    000000000 


Q ss_pred             ---ccCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCC--cEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEe
Q 011351          117 ---CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYI  191 (488)
Q Consensus       117 ---~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~--~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~  191 (488)
                         ............++++.+++++.+++|+++++++  ..|.+.++ ++.||+||+|||+.+.  |.+++   ..+.+.
T Consensus        82 ~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~~d~vVlAtG~~~~--p~ip~---~~~~~~  155 (369)
T 3d1c_A           82 EEHISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTE-TYHADYIFVATGDYNF--PKKPF---KYGIHY  155 (369)
T ss_dssp             CSSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-CEEEEEEEECCCSTTS--BCCCS---SSCEEG
T ss_pred             ccCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCC-EEEeCEEEECCCCCCc--cCCCC---Cceech
Confidence               0000000112334466899999998999998763  46777776 5899999999998764  33333   222332


Q ss_pred             cCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc------ccCHHHHHHHHHHHHHcC-c
Q 011351          192 RDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------LFTPSLAQRYEQLYQQNG-V  264 (488)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~------~~~~~~~~~~~~~l~~~G-V  264 (488)
                      ..+.+..     ...+++++|||+|.+|+|+|..|.+.+.+|+++++.+.+++.      .+++...+.+.+.+++.| |
T Consensus       156 ~~~~~~~-----~~~~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~~~d~~~~~~~~~~~~l~~~l~~~g~v  230 (369)
T 3d1c_A          156 SEIEDFD-----NFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQGARI  230 (369)
T ss_dssp             GGCSCGG-----GSCSSEEEEECCSHHHHHHHHHHHHTTCEEEEECC----------CTTSCCHHHHHHHHHHHHTTCCE
T ss_pred             hhcCChh-----hcCCCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCCccCCHHHHHHHHHHHhhCCcE
Confidence            2211111     125689999999999999999999999999999999887742      245677788999999997 9


Q ss_pred             EEEcCCeEEEEEeCCCCcEEEEEeCCCcEEE-cCEEEEeecCccCChhhhhcCCcccCCCEEeCCC-CCCCCCCEEEEce
Q 011351          265 KFVKGASIKNLEAGSDGRVAAVKLEDGSTID-ADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQ-FRTRMPGIFAIGD  342 (488)
Q Consensus       265 ~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~-~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~-~~t~~~~Ifa~GD  342 (488)
                      +++++++|++++..+ +. ..+.+.+|+++. +|.||+|+|++|+.+++.+.++..++|++.||++ ++|+.|||||+||
T Consensus       231 ~~~~~~~v~~i~~~~-~~-~~v~~~~g~~~~~~d~vi~a~G~~~~~~~~~~~~~~~~~g~i~v~~~~~~t~~~~v~a~GD  308 (369)
T 3d1c_A          231 EMNVHYTVKDIDFNN-GQ-YHISFDSGQSVHTPHEPILATGFDATKNPIVQQLFVTTNQDIKLTTHDESTRYPNIFMIGA  308 (369)
T ss_dssp             EEECSCCEEEEEEET-TE-EEEEESSSCCEEESSCCEECCCBCGGGSHHHHHHSCCTTSCCCBCTTSBBSSSTTEEECST
T ss_pred             EEecCcEEEEEEecC-Cc-eEEEecCCeEeccCCceEEeeccCCccchhhhhhccCCCCCEEechhhcccCCCCeEEecc
Confidence            999999999996432 22 357788888775 6999999999999877766556544677999985 6789999999999


Q ss_pred             ecccCCccCCcccccccHHHHHHHHHHHHHHHhcCC
Q 011351          343 VAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ  378 (488)
Q Consensus       343 ~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~  378 (488)
                      |+..+....+      .+..+.+||+.+|++|.+..
T Consensus       309 ~~~~~~~~~~------~~~~~~~~a~~~a~~l~~~~  338 (369)
T 3d1c_A          309 TVENDNAKLC------YIYKFRARFAVLAHLLTQRE  338 (369)
T ss_dssp             TCCCSSCCCC------SHHHHGGGHHHHHHHHHHHT
T ss_pred             ccccCCeeEE------EEehhhHHHHHHHHHHhccc
Confidence            9987654322      34457888999999998643

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=100.00  E-value=2.7e-33  Score=288.85  Aligned_cols=288  Identities=22%  Similarity=0.301  Sum_probs=209.9

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC-CCCCCccccCCCCCCCCCCCCcccccCCCCCCCCH
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE-RPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP  127 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (488)
                      +..+||+|||||+||++||.+|++.|+   +|+|||+.....+. ....            ..+.++....+........
T Consensus       210 ~~~~dVvIIGgG~AGl~aA~~la~~G~---~v~lie~~~GG~~~~~~~~------------~~~~~~~~~~~~~l~~~l~  274 (521)
T 1hyu_A          210 RDAYDVLIVGSGPAGAAAAVYSARKGI---RTGLMGERFGGQVLDTVDI------------ENYISVPKTEGQKLAGALK  274 (521)
T ss_dssp             SCCEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSTTGGGTTCSCB------------CCBTTBSSBCHHHHHHHHH
T ss_pred             cCcccEEEECCcHHHHHHHHHHHhCCC---eEEEEECCCCCcccccccc------------cccCCCCCCCHHHHHHHHH
Confidence            346799999999999999999999987   89999864211000 0000            0011110000000111234


Q ss_pred             hHHHHCCCeEEeCCcEEEEeCC-----CcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCC---CCcEEEecCHHHHHH
Q 011351          128 EWYKEKGIEMIYQDPVTSIDIE-----KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADA  199 (488)
Q Consensus       128 ~~~~~~~i~~~~~~~v~~id~~-----~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~---~~gv~~~~~~~~~~~  199 (488)
                      +.+++.+++++.+++|+.++++     ...|++++|+++.||+||+|||+.+.. +.++|..   ..++++....     
T Consensus       275 ~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~~-~~ipG~~~~~~~~v~~~~~~-----  348 (521)
T 1hyu_A          275 AHVSDYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRN-MNVPGEDQYRTKGVTYCPHC-----  348 (521)
T ss_dssp             HHHHTSCEEEECSCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEECC-CCCTTTTTTTTTTEECCTTC-----
T ss_pred             HHHHHcCCEEEcCCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCCCcCC-CCCCChhhhcCceEEEeecC-----
Confidence            4556789999998899999864     457888889889999999999998763 4455532   1334433211     


Q ss_pred             HHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHH-cCcEEEcCCeEEEEEeC
Q 011351          200 LISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAG  278 (488)
Q Consensus       200 ~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~  278 (488)
                       ......+++++|||+|.+|+|+|..|+..+.+|+++++.+.+..   +    ..+.+.+++ .||++++++.++++..+
T Consensus       349 -~~~~~~~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~~---~----~~l~~~l~~~~gV~v~~~~~v~~i~~~  420 (521)
T 1hyu_A          349 -DGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA---D----QVLQDKVRSLKNVDIILNAQTTEVKGD  420 (521)
T ss_dssp             -CGGGGBTSEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCCS---C----HHHHHHHTTCTTEEEECSEEEEEEEEC
T ss_pred             -chhhcCCCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccCc---C----HHHHHHHhcCCCcEEEeCCEEEEEEcC
Confidence             12234689999999999999999999999999999999987764   2    245566666 69999999999999853


Q ss_pred             CCCcEEEEEeCC---Cc--EEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCC
Q 011351          279 SDGRVAAVKLED---GS--TIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYD  352 (488)
Q Consensus       279 ~~~~v~~v~l~~---g~--~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~  352 (488)
                       ++++..+.+.+   |+  ++++|.|++++|.+|+++++++ .+..+ +|+|.||++++|+.|||||+|||+..+..   
T Consensus       421 -~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~-~l~~~~~G~I~Vd~~~~ts~p~VfA~GD~~~~~~~---  495 (521)
T 1hyu_A          421 -GSKVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLEG-ALERNRMGEIIIDAKCETSVKGVFAAGDCTTVPYK---  495 (521)
T ss_dssp             -SSSEEEEEEEETTTCCEEEEECSEEEECCCEEESCGGGTT-TSCBCTTSCBCCCTTCBCSSTTEEECSTTBCCSSC---
T ss_pred             -CCcEEEEEEEeCCCCceEEEEcCEEEECcCCCCCchHHhh-hhccCCCCcEEeCCCCCCCCCCEEEeecccCCCcc---
Confidence             45665666653   54  6899999999999999988876 36554 68899999999999999999999986532   


Q ss_pred             cccccccHHHHHHHHHHHHHHHhc
Q 011351          353 RTARVEHVDHARQSAQHCIKALLS  376 (488)
Q Consensus       353 ~~~~~~~~~~A~~~g~~~a~~i~~  376 (488)
                            .+..|..+|+.+|.++..
T Consensus       496 ------~~~~A~~~g~~aa~~i~~  513 (521)
T 1hyu_A          496 ------QIIIATGEGAKASLSAFD  513 (521)
T ss_dssp             ------CHHHHHHHHHHHHHHHHH
T ss_pred             ------eeeehHHhHHHHHHHHHH
Confidence                  455688888888887753

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=99.97  E-value=1.3e-32  Score=278.94  Aligned_cols=291  Identities=16%  Similarity=0.163  Sum_probs=198.1

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      .+++|+|||||+||+++|..|++.+. +.+|+|||+++.. |...  ..+ ..+.......           ......++
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~-~~~V~vie~~~~~-gg~~--~~g-~~p~~~~~~~-----------~~~~~~~~   68 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHS-RAHVDIYEKQLVP-FGLV--RFG-VAPDHPEVKN-----------VINTFTQT   68 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCS-SCEEEEECSSSSS-CTHH--HHT-SCTTCGGGGG-----------HHHHHHHH
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCC-CCCEEEEeCCCcC-Ccee--ecc-cCCCCccHHH-----------HHHHHHHH
Confidence            45799999999999999999999883 4599999998764 3211  000 0010000000           01123455


Q ss_pred             HHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHH----HHHh--
Q 011351          130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADA----LISS--  203 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~----~~~~--  203 (488)
                      +++.+++++.++.+      .+.|++++. .+.||+||+|||+.+...++++|.+.+++++.+++.....    ....  
T Consensus        69 ~~~~gv~~~~~~~v------~~~V~~~~~-~~~~d~lVlAtGs~~~~~~~ipG~~~~gv~~~~~~~~~~~~~~d~~~~~~  141 (460)
T 1cjc_A           69 ARSDRCAFYGNVEV------GRDVTVQEL-QDAYHAVVLSYGAEDHQALDIPGEELPGVFSARAFVGWYNGLPENRELAP  141 (460)
T ss_dssp             HTSTTEEEEBSCCB------TTTBCHHHH-HHHSSEEEECCCCCEECCCCCTTTTSTTEEEHHHHHHHHTTCGGGTTCCC
T ss_pred             HHhCCcEEEeeeEE------eeEEEeccc-eEEcCEEEEecCcCCCCCCCCCCCCCCcEEEHHHHHHHhhcCcccccccc
Confidence            66789999987655      133444433 3689999999999863456778877788887654321100    0000  


Q ss_pred             hhcCCeEEEECCCHHHHHHHHHHH--------------------hCCC-cEEEEecCCcCc--------------cc---
Q 011351          204 LEKAKKVVVVGGGYIGMEVAAAAV--------------------GWKL-DTTIIFPENHLL--------------QR---  245 (488)
Q Consensus       204 ~~~~~~vvVvG~G~~g~e~A~~l~--------------------~~g~-~v~lv~~~~~~l--------------~~---  245 (488)
                      ...+++++|||+|++|+|+|..|.                    +.+. +|+++.|++.+.              +.   
T Consensus       142 ~~~~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~~~~ft~~el~~l~~lp~~~~  221 (460)
T 1cjc_A          142 DLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRP  221 (460)
T ss_dssp             CTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGCCCCHHHHHHHHTCTTEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCChHhhccCHHHHHHhhcCCCcee
Confidence            014789999999999999999999                    5676 799999987652              11   


Q ss_pred             -----cc----------CHH---HHHHHHHHHHH--------------cCcEEEcCCeEEEEEeCCCC-cEEEEEeC---
Q 011351          246 -----LF----------TPS---LAQRYEQLYQQ--------------NGVKFVKGASIKNLEAGSDG-RVAAVKLE---  289 (488)
Q Consensus       246 -----~~----------~~~---~~~~~~~~l~~--------------~GV~v~~~~~v~~i~~~~~~-~v~~v~l~---  289 (488)
                           .+          +..   +.+.+.+.+++              +||++++++.++++..++++ ++..|.+.   
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~v~~v~~~~~~  301 (460)
T 1cjc_A          222 MLDPADFLGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTR  301 (460)
T ss_dssp             ECCGGGGTTHHHHTTTSCHHHHHHHHHHHHHHHSCCCHHHHHHHHTCSEEEEEECSEEEEEEEECTTSSSEEEEEEEEEE
T ss_pred             EechhhhcchhhhhhhccHHHHHHHHHHHHHHHhccccccccCCCCCCceEEEECCCChheEEcCCCCceEEEEEEEEEE
Confidence                 01          110   23344445555              89999999999999854335 56555543   


Q ss_pred             ------------CC--cEEEcCEEEEeecCccCChhhhhcCC-ccc-CCCEEeCCCCCCC-CCCEEEEceecccCCccCC
Q 011351          290 ------------DG--STIDADTIVIGIGAKPTVSPFERVGL-NSS-VGGIQVDGQFRTR-MPGIFAIGDVAAFPLKMYD  352 (488)
Q Consensus       290 ------------~g--~~i~~D~vi~a~G~~p~~~~~~~~gl-~~~-~g~i~vd~~~~t~-~~~Ifa~GD~a~~~~~~~~  352 (488)
                                  +|  ++++||.||+++|++|+. +   .|+ ..+ +|+|.||+++||+ .|+|||+|||+..+..   
T Consensus       302 l~~~~~~~~~~~~g~~~~i~~d~Vi~a~G~~p~~-l---~gl~~~d~~g~i~vn~~~rt~~~p~vya~Gd~~~g~~~---  374 (460)
T 1cjc_A          302 LEGIGEATRAVPTGDVEDLPCGLVLSSIGYKSRP-I---DPSVPFDPKLGVVPNMEGRVVDVPGLYCSGWVKRGPTG---  374 (460)
T ss_dssp             EESSGGGCEEEEEEEEEEEECSEEEECCCEECCC-C---CTTSCCBTTTTBCCEETTEETTCTTEEECTHHHHCTTC---
T ss_pred             EccccCCCcccCCCceEEEEcCEEEECCCCCCCC-C---CCCcccccCCCeeECCCCcCcCCCCEEEEEeCCcCCCc---
Confidence                        34  579999999999999996 3   566 554 5889999999998 7999999999975432   


Q ss_pred             cccccccHHHHHHHHHHHHHHHhc
Q 011351          353 RTARVEHVDHARQSAQHCIKALLS  376 (488)
Q Consensus       353 ~~~~~~~~~~A~~~g~~~a~~i~~  376 (488)
                            .+..|+.+|+.+|.+|++
T Consensus       375 ------~i~~a~~~g~~aa~~i~~  392 (460)
T 1cjc_A          375 ------VITTTMTDSFLTGQILLQ  392 (460)
T ss_dssp             ------CHHHHHHHHHHHHHHHHH
T ss_pred             ------cHHHHHHHHHHHHHHHHH
Confidence                  244577777777777764

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=99.97  E-value=1.8e-32  Score=293.27  Aligned_cols=293  Identities=16%  Similarity=0.201  Sum_probs=198.9

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHh
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (488)
                      ..+++|+|||||+||++||..|++.|+   +|+|||+++.....       +...     ..++++..+      ....+
T Consensus       387 ~~~~~VvIIGgGpAGl~aA~~L~~~G~---~Vtlie~~~~~GG~-------~~~~-----~~~pg~~~~------~~~~~  445 (729)
T 1o94_A          387 KNKDSVLIVGAGPSGSEAARVLMESGY---TVHLTDTAEKIGGH-------LNQV-----AALPGLGEW------SYHRD  445 (729)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSTTTT-------HHHH-----TTSTTCGGG------HHHHH
T ss_pred             cCCceEEEECCCHHHHHHHHHHHHCCC---eEEEEeCCCCcCCe-------eeec-----ccCCChHHH------HHHHH
Confidence            456899999999999999999999987   89999998764221       0000     011111100      01111


Q ss_pred             HHHHCCCeEE--eCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCC-------cCCCCCCCC--CCcEEEecCHHHH
Q 011351          129 WYKEKGIEMI--YQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS-------RFPEKIGGY--LPGVHYIRDVADA  197 (488)
Q Consensus       129 ~~~~~~i~~~--~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~-------~~~~~~g~~--~~gv~~~~~~~~~  197 (488)
                      +++. .++.+  .+..+..++. ++.++++++..+.||+||||||+.+.       ..++++|.+  .+++++.   .+.
T Consensus       446 ~~~~-~i~~~~~~~~~~v~i~~-~~~v~~~~~~~~~~d~vviAtG~~~~~~~~~~p~~~~ipG~~~~~~~v~~~---~~~  520 (729)
T 1o94_A          446 YRET-QITKLLKKNKESQLALG-QKPMTADDVLQYGADKVIIATGARWNTDGTNCLTHDPIPGADASLPDQLTP---EQV  520 (729)
T ss_dssp             HHHH-HHHHHHHHSTTCEEECS-CCCCCHHHHHTSCCSEEEECCCEEECSSCCCTTTSSCCTTCCTTSTTEECH---HHH
T ss_pred             HHHH-HHHHhhcccCCceEEEe-CeEEehhhccccCCCEEEEcCCCCcccccccCccCCCCCCccccCCCEEEH---HHH
Confidence            2111 11100  0112223332 23444555556899999999999842       234556654  4455543   222


Q ss_pred             HHHHHhhhcCCeEEEEC--CCHHHHHHHHHHHhCCCcEEEEecCCcCccc-ccCHHHHHHHHHHHHHcCcEEEcCCeEEE
Q 011351          198 DALISSLEKAKKVVVVG--GGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-LFTPSLAQRYEQLYQQNGVKFVKGASIKN  274 (488)
Q Consensus       198 ~~~~~~~~~~~~vvVvG--~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~-~~~~~~~~~~~~~l~~~GV~v~~~~~v~~  274 (488)
                        +......+++|+|||  +|.+|+|+|..|+++|.+|+++++.+ ++++ .++.. ...+.+.|++.||++++++.+++
T Consensus       521 --l~~~~~~gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~-l~~~~~~~~~-~~~~~~~l~~~GV~i~~~~~v~~  596 (729)
T 1o94_A          521 --MDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH-LANYMHFTLE-YPNMMRRLHELHVEELGDHFCSR  596 (729)
T ss_dssp             --HHCCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC-TTHHHHHTTC-HHHHHHHHHHTTCEEECSEEEEE
T ss_pred             --hcCCCCCCCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc-cccccccccc-HHHHHHHHHhCCCEEEcCcEEEE
Confidence              222334578999998  99999999999999999999999998 6653 13333 45677888999999999999999


Q ss_pred             EEeCCCCcEEEEE--eCCC-cE------------------EEcCEEEEeecCccCChhhhhcCCcccCCCEEeCCCCCCC
Q 011351          275 LEAGSDGRVAAVK--LEDG-ST------------------IDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTR  333 (488)
Q Consensus       275 i~~~~~~~v~~v~--l~~g-~~------------------i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~  333 (488)
                      ++.  ++ + .+.  +.++ ++                  +++|.||+|+|.+|+++++++++.       .+|++++|+
T Consensus       597 i~~--~~-v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~~~l~~~l~~-------~vd~~~~t~  665 (729)
T 1o94_A          597 IEP--GR-M-EIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSECTLWNELKA-------RESEWAEND  665 (729)
T ss_dssp             EET--TE-E-EEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEECCHHHHHHHH-------TGGGTGGGT
T ss_pred             EEC--Ce-E-EEEEecCCceEEecccccccccccCCcceeeeCCEEEECCCCCCChHHHHHHhh-------hcccccccC
Confidence            973  22 2 222  1233 33                  999999999999999988775432       268899999


Q ss_pred             CCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCCCCceeEeccccC
Q 011351          334 MPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYE  396 (488)
Q Consensus       334 ~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~~~~~~~p~~~~~~~~~~  396 (488)
                      +|+|||+|||+...           .+..|..+|+.+|.+|.+.  ..+..+|| |++++++.
T Consensus       666 ~~~VyAiGD~~~~~-----------~~~~A~~~G~~aA~~i~~~--l~~~~~p~-~~~~~~~~  714 (729)
T 1o94_A          666 IKGIYLIGDAEAPR-----------LIADATFTGHRVAREIEEA--NPQIAIPY-KRETIAWG  714 (729)
T ss_dssp             CCEEEECGGGTSCC-----------CHHHHHHHHHHHHHTTTSS--CTTSCCCC-CCCCCCTT
T ss_pred             CCCeEEEeCccchh-----------hHHHHHHHHHHHHHHhhhh--cccCCCCe-eeecccCc
Confidence            99999999998621           4567999999999999853  34677888 77887754

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=99.97  E-value=4.5e-31  Score=268.54  Aligned_cols=289  Identities=15%  Similarity=0.155  Sum_probs=195.3

Q ss_pred             CCeEEEEcCchHHHHHHHHHHH---cCCCCCcEEEEcCCCCCC----CCC-CCC--------C---ccccCCCCCCCCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVE---HGMADGRLCIVSKEAYAP----YER-PAL--------T---KGYLFPLDKKPARL  111 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~---~g~~~~~V~lie~~~~~~----~~~-~~l--------~---~~~~~~~~~~~~~~  111 (488)
                      .++|+|||||+||++||..|++   .|.+..+|+|||+++...    |.. +..        +   .............+
T Consensus         2 ~~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~   81 (464)
T 2xve_A            2 ATRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEF   81 (464)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCB
T ss_pred             CCcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhccc
Confidence            3699999999999999999999   887212299999986532    110 000        0   00000000000001


Q ss_pred             CCcccc-----------cCCCCCCCCHhHHHHCCCe--EEeCCcEEEEeCCCc----EEEeCC---C--cEEEeccEEec
Q 011351          112 PGFHTC-----------VGSGGERQTPEWYKEKGIE--MIYQDPVTSIDIEKQ----TLITNS---G--KLLKYGSLIVA  169 (488)
Q Consensus       112 ~~~~~~-----------~~~~~~~~~~~~~~~~~i~--~~~~~~v~~id~~~~----~v~~~~---g--~~i~yd~lVlA  169 (488)
                      +.+...           .......++.+++++.+++  ++++++|+.++....    +|++.+   |  .++.||+||+|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVvA  161 (464)
T 2xve_A           82 ADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCC  161 (464)
T ss_dssp             TTBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             CCCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEEC
Confidence            111000           0000001122344556887  888889999987654    677654   4  56899999999


Q ss_pred             cC--CCCCcCCCCCCCCC-Cc-EEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc
Q 011351          170 TG--CTASRFPEKIGGYL-PG-VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR  245 (488)
Q Consensus       170 tG--~~~~~~~~~~g~~~-~g-v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~  245 (488)
                      ||  +.|. .|.++|.+. ++ +.+..++.+.     ....+++|+|||+|.+|+|+|..|.+.+.+|+++++++.+++.
T Consensus       162 tG~~s~p~-~p~ipG~~~~~g~~~hs~~~~~~-----~~~~~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~~~~  235 (464)
T 2xve_A          162 TGHFSTPY-VPEFEGFEKFGGRILHAHDFRDA-----LEFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPMGY  235 (464)
T ss_dssp             CCSSSSBC-CCCCBTTTTCCSEEEEGGGCCCG-----GGGTTSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCCCCC
T ss_pred             CCCCCCCc-cCCCCCcccCCceEEehhhhCCH-----hHcCCCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCCCCC
Confidence            99  6665 455666432 33 2332221111     1236899999999999999999999999999999999887764


Q ss_pred             ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhh-cCCcccCC-C
Q 011351          246 LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER-VGLNSSVG-G  323 (488)
Q Consensus       246 ~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~-~gl~~~~g-~  323 (488)
                      .+             ..||+++  ..|++++.   +   .|.+.||+++++|.||+|||++|+.+++.. +++..+++ .
T Consensus       236 ~~-------------~~~V~~~--~~V~~i~~---~---~V~~~dG~~i~~D~Vi~atG~~p~~~~l~~~~gl~~~~~~~  294 (464)
T 2xve_A          236 KW-------------PENWDER--PNLVRVDT---E---NAYFADGSSEKVDAIILCTGYIHHFPFLNDDLRLVTNNRLW  294 (464)
T ss_dssp             CC-------------CTTEEEC--SCEEEECS---S---EEEETTSCEEECSEEEECCCBCCCCTTBCTTTCCCCCSSSC
T ss_pred             CC-------------CCceEEc--CCeEEEeC---C---EEEECCCCEEeCCEEEECCCCCCCCCCcCcccccccCCCcc
Confidence            32             2478887  67888852   2   578899999999999999999999998875 67776655 4


Q ss_pred             EEeCCC---CCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCC
Q 011351          324 IQVDGQ---FRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ  378 (488)
Q Consensus       324 i~vd~~---~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~  378 (488)
                      + ++.+   ++|+.|+|||+|||+...           .+..|..||+.+|+++.+..
T Consensus       295 v-~~~~~~~~~t~~p~i~aiGd~~~~~-----------~~~~a~~qa~~~a~~l~G~~  340 (464)
T 2xve_A          295 P-LNLYKGVVWEDNPKFFYIGMQDQWY-----------SFNMFDAQAWYARDVIMGRL  340 (464)
T ss_dssp             C-SSEETTTEESSSTTEEECSCSCCSS-----------CHHHHHHHHHHHHHHHTTSS
T ss_pred             c-ccccceEecCCCCCEEEEeCccccc-----------chHHHHHHHHHHHHHHcCCC
Confidence            4 4433   568999999999988631           45678999999999998754

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=99.97  E-value=5.3e-32  Score=288.52  Aligned_cols=276  Identities=18%  Similarity=0.159  Sum_probs=194.1

Q ss_pred             CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCH
Q 011351           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP  127 (488)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (488)
                      ...++||+|||||+||++||..|++.|+   +|+|||+++..... ....  ...         ++....  ........
T Consensus       388 ~~~~~~VvIIGgG~AGl~aA~~La~~G~---~V~liE~~~~~GG~-~~~~--~~~---------p~~~~~--~~~~~~~~  450 (690)
T 3k30_A          388 KESDARVLVVGAGPSGLEAARALGVRGY---DVVLAEAGRDLGGR-VTQE--SAL---------PGLSAW--GRVKEYRE  450 (690)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHHHTC---EEEEECSSSSSCTH-HHHH--HTS---------TTCGGG--GHHHHHHH
T ss_pred             ccccceEEEECCCHHHHHHHHHHHHCCC---eEEEEecCCCCCCE-eeec--cCC---------CchhHH--HHHHHHHH
Confidence            3457899999999999999999999987   89999998754321 0000  000         110000  00001223


Q ss_pred             hHHHHC-CCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCC-------cCCCCCCCCCCcEEEecCHHHHHH
Q 011351          128 EWYKEK-GIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS-------RFPEKIGGYLPGVHYIRDVADADA  199 (488)
Q Consensus       128 ~~~~~~-~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~-------~~~~~~g~~~~gv~~~~~~~~~~~  199 (488)
                      ..+.+. ++++++++.++          .++++++.||+||+|||+.+.       ..+.++|.+.+++.+.   .+  .
T Consensus       451 ~~~~~~~gv~~~~~~~v~----------~~~~~~~~~d~lvlAtG~~~~~~~~~~~~~~~i~G~~~~~v~~~---~~--~  515 (690)
T 3k30_A          451 AVLAELPNVEIYRESPMT----------GDDIVEFGFEHVITATGATWRTDGVARFHTTALPIAEGMQVLGP---DD--L  515 (690)
T ss_dssp             HHHHTCTTEEEESSCCCC----------HHHHHHTTCCEEEECCCEEECSSCCSSSCSSCCCBCTTSEEECH---HH--H
T ss_pred             HHHHHcCCCEEEECCeec----------HHHHhhcCCCEEEEcCCCccccccccccCCCCCCCCCCCcEEcH---HH--H
Confidence            344555 88888765432          233445789999999999853       1344555544444332   22  2


Q ss_pred             HHHhhhcCCeEEEEC--CCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 011351          200 LISSLEKAKKVVVVG--GGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  277 (488)
Q Consensus       200 ~~~~~~~~~~vvVvG--~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~  277 (488)
                      +......+++++|||  +|.+|+|+|..|.+.|.+|+++++.+.+++...++.....+.+.+++.||+++++++|++++.
T Consensus       516 l~~~~~~g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~  595 (690)
T 3k30_A          516 FAGRLPDGKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWTNNTFEVNRIQRRLIENGVARVTDHAVVAVGA  595 (690)
T ss_dssp             HTTCCCSSSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGGGGGGTCHHHHHHHHHHTTCEEEESEEEEEEET
T ss_pred             hCCCCCCCCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEecccccccccccchhHHHHHHHHHHCCCEEEcCcEEEEEEC
Confidence            222334678899999  999999999999999999999999998887654566678888999999999999999999984


Q ss_pred             CCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeCCCCCCCCCCEEEEceecccCCccCCccccc
Q 011351          278 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARV  357 (488)
Q Consensus       278 ~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~  357 (488)
                      + +..+..+...+++++++|.||+|+|++|+.++++.++...   .       +|+.|+|||+|||+..+          
T Consensus       596 ~-~~~v~~~~~~~~~~i~aD~VV~A~G~~p~~~l~~~l~~~~---~-------~t~~~~VyaiGD~~~~~----------  654 (690)
T 3k30_A          596 G-GVTVRDTYASIERELECDAVVMVTARLPREELYLDLVARR---D-------AGEIASVRGIGDAWAPG----------  654 (690)
T ss_dssp             T-EEEEEETTTCCEEEEECSEEEEESCEEECCHHHHHHHHHH---H-------HTSCSEEEECGGGTSCB----------
T ss_pred             C-eEEEEEccCCeEEEEECCEEEECCCCCCChHHHHHHhhhh---c-------ccCCCCEEEEeCCCchh----------
Confidence            2 2111111123566899999999999999998877653321   1       78899999999999742          


Q ss_pred             ccHHHHHHHHHHHHHHHhcC
Q 011351          358 EHVDHARQSAQHCIKALLSA  377 (488)
Q Consensus       358 ~~~~~A~~~g~~~a~~i~~~  377 (488)
                       .+..|..+|+.+|.+|.+.
T Consensus       655 -~~~~A~~~g~~aa~~i~~~  673 (690)
T 3k30_A          655 -TIAAAVWSGRRAAEEFDAV  673 (690)
T ss_dssp             -CHHHHHHHHHHHHHHTTCC
T ss_pred             -hHHHHHHHHHHHHHHHHhh
Confidence             3455999999999999864

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=99.97  E-value=1e-31  Score=272.04  Aligned_cols=287  Identities=18%  Similarity=0.204  Sum_probs=192.6

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHH-c------CCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVE-H------GMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGG  122 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~-~------g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (488)
                      .+++|+|||||+||++||..|++ .      +.   +|+|||+++.+ |...  ..+ ..+......           ..
T Consensus         2 ~~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~---~V~lie~~~~~-gg~~--~~g-v~p~~~~~~-----------~~   63 (456)
T 1lqt_A            2 RPYYIAIVGSGPSAFFAAASLLKAADTTEDLDM---AVDMLEMLPTP-WGLV--RSG-VAPDHPKIK-----------SI   63 (456)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHHHHHSTTCCE---EEEEEESSSSC-STHH--HHT-SCTTCTGGG-----------GG
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhCccccCCCC---eEEEEecCCCC-CCcc--ccc-cCCCCCCHH-----------HH
Confidence            35799999999999999999999 7      65   89999998763 3211  000 111100000           01


Q ss_pred             CCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHH-H
Q 011351          123 ERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADAL-I  201 (488)
Q Consensus       123 ~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~-~  201 (488)
                      .....+++++.+++++.+..+      .+.|++++++ +.||+||+|||+.+...+.++|.+.+++++..++....+- .
T Consensus        64 ~~~~~~~~~~~~v~~~~~v~v------~~~v~~~~~~-~~~d~lViAtG~~~~~~~~ipG~~~~gv~~~~~~~~~~~~~~  136 (456)
T 1lqt_A           64 SKQFEKTAEDPRFRFFGNVVV------GEHVQPGELS-ERYDAVIYAVGAQSDRMLNIPGEDLPGSIAAVDFVGWYNAHP  136 (456)
T ss_dssp             HHHHHHHHTSTTEEEEESCCB------TTTBCHHHHH-HHSSEEEECCCCCEECCCCCTTTTSTTEEEHHHHHHHHTTCG
T ss_pred             HHHHHHHHhcCCCEEEeeEEE------CCEEEECCCe-EeCCEEEEeeCCCCCCCCCCCCCCCCCcEEHHHHHhhhhcCc
Confidence            122345566778999877442      2345555553 7899999999997323456777777787765433211000 0


Q ss_pred             ---Hhh--hcCCeEEEECCCHHHHHHHHHHHhC--------------------C-CcEEEEecCCcCcccccC-------
Q 011351          202 ---SSL--EKAKKVVVVGGGYIGMEVAAAAVGW--------------------K-LDTTIIFPENHLLQRLFT-------  248 (488)
Q Consensus       202 ---~~~--~~~~~vvVvG~G~~g~e~A~~l~~~--------------------g-~~v~lv~~~~~~l~~~~~-------  248 (488)
                         ...  ..+++++|||+|++|+|+|..|.+.                    + .+|+++.|++.+...+..       
T Consensus       137 d~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~~~~f~~~elrel~  216 (456)
T 1lqt_A          137 HFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELA  216 (456)
T ss_dssp             GGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCCCCHHHHHHGG
T ss_pred             ccccchhhcCCCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChhhhccChHHHHHhh
Confidence               011  1578999999999999999999874                    4 489999998866542111       


Q ss_pred             -----------HHH------------------HHHHHHHHHH------cCcEEEcCCeEEEEEeCCCCcEEEEEeC----
Q 011351          249 -----------PSL------------------AQRYEQLYQQ------NGVKFVKGASIKNLEAGSDGRVAAVKLE----  289 (488)
Q Consensus       249 -----------~~~------------------~~~~~~~l~~------~GV~v~~~~~v~~i~~~~~~~v~~v~l~----  289 (488)
                                 +++                  .+.+.+.+++      +||++++++.++++..+  +++..+.+.    
T Consensus       217 ~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~gv~i~~~~~~~~i~~~--~~v~~v~~~~~~~  294 (456)
T 1lqt_A          217 DLDGVDVVIDPAELDGITDEDAAAVGKVCKQNIKVLRGYADREPRPGHRRMVFRFLTSPIEIKGK--RKVERIVLGRNEL  294 (456)
T ss_dssp             GCTTEEEECCGGGGTTCCHHHHHHHCHHHHHHHHHHHHHHTCC-CTTSEEEEEECSEEEEEEECS--SSCCEEEEEEEEE
T ss_pred             cCCCceeeeChHHhccchhhhhhhccHHHHHHHHHHHHHhhcCCCCCCceEEEEeCCCCeEEecC--CcEeEEEEEEEEe
Confidence                       111                  2344444555      79999999999999843  444344443    


Q ss_pred             ------------CC--cEEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCCCCC-CCCCCEEEEceecccCCccCCc
Q 011351          290 ------------DG--STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFR-TRMPGIFAIGDVAAFPLKMYDR  353 (488)
Q Consensus       290 ------------~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~-t~~~~Ifa~GD~a~~~~~~~~~  353 (488)
                                  +|  ++++||.|++++|++|+. +   .++..+ +|++.+|+++| |+.|+|||+|||+..|...   
T Consensus       295 ~~~~~~~~~~~~~g~~~~i~~d~vi~a~G~~p~~-l---~gl~~d~~g~i~vn~~~rvt~~pgvya~GD~~~gp~~~---  367 (456)
T 1lqt_A          295 VSDGSGRVAAKDTGEREELPAQLVVRSVGYRGVP-T---PGLPFDDQSGTIPNVGGRINGSPNEYVVGWIKRGPTGV---  367 (456)
T ss_dssp             EECSSSSEEEEEEEEEEEEECSEEEECSCEECCC-C---TTSCCBTTTTBCCEETTEETTCSSEEECTHHHHCSCSC---
T ss_pred             cCCCcccccccCCCceEEEEcCEEEEccccccCC-C---CCCcccCCCCeeECCCCcCCCCCCEEEEeccCCCCchh---
Confidence                        34  469999999999999986 3   355554 57899999999 7999999999999755421   


Q ss_pred             ccccccHHHHHHHHHHHHHHHhc
Q 011351          354 TARVEHVDHARQSAQHCIKALLS  376 (488)
Q Consensus       354 ~~~~~~~~~A~~~g~~~a~~i~~  376 (488)
                            +..|+.+|..+|.+|++
T Consensus       368 ------i~~a~~~g~~~a~~i~~  384 (456)
T 1lqt_A          368 ------IGTNKKDAQDTVDTLIK  384 (456)
T ss_dssp             ------TTHHHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHHHHHH
Confidence                  22366777777777754

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=99.97  E-value=8.4e-31  Score=287.58  Aligned_cols=279  Identities=15%  Similarity=0.171  Sum_probs=204.8

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCC-CCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA-LTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      ++||||||||+||++||.+|++.|+   +|+|||+++..... .. .++..          +++...   .++.....+.
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~G~---~V~lie~~~~~GG~-~~~~~k~~----------i~~~~~---~~~~~~~~~~  190 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRSGA---RVMLLDERAEAGGT-LLDTAGEQ----------IDGMDS---SAWIEQVTSE  190 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSSGG-GGGSSCCE----------ETTEEH---HHHHHHHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCC---cEEEEeCCCCCCce-eccCCccc----------cCCCCH---HHHHHHHHHH
Confidence            4789999999999999999999987   89999998764311 10 00000          000000   0000111223


Q ss_pred             HHH-CCCeEEeCCcEEEEeCCCcEEEe-----------------CCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEe
Q 011351          130 YKE-KGIEMIYQDPVTSIDIEKQTLIT-----------------NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYI  191 (488)
Q Consensus       130 ~~~-~~i~~~~~~~v~~id~~~~~v~~-----------------~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~  191 (488)
                      +.+ .+++++.+++|+.++..+....+                 .++..+.||+||||||+.++ .++++|.+.+++++.
T Consensus       191 l~~~~~v~~~~~~~V~~i~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~-~~~ipG~~~~gv~~~  269 (965)
T 2gag_A          191 LAEAEETTHLQRTTVFGSYDANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHER-PIVFENNDRPGIMLA  269 (965)
T ss_dssp             HHHSTTEEEESSEEEEEEETTTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEEC-CCCCBTCCSTTEEEH
T ss_pred             HhhcCCcEEEeCCEEEeeecCCceeeeEeecccccccccccCCCCceEEEECCEEEECCCCccC-CCCCCCCCCCCEEEh
Confidence            344 48999998889998876532211                 11236899999999999876 456788888898876


Q ss_pred             cCHHHHHHHHHh--hhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcC
Q 011351          192 RDVADADALISS--LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG  269 (488)
Q Consensus       192 ~~~~~~~~~~~~--~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~  269 (488)
                      .++.   .+.+.  ...+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+++     .     .+.+++.||+++++
T Consensus       270 ~~~~---~~l~~~~~~~gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~~-----~-----~~~l~~~GV~v~~~  336 (965)
T 2gag_A          270 GAVR---SYLNRYGVRAGARIAVATTNDSAYELVRELAATGGVVAVIDARSSISA-----A-----AAQAVADGVQVISG  336 (965)
T ss_dssp             HHHH---HHHHTTCEESCSSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCCH-----H-----HHHHHHTTCCEEET
T ss_pred             HHHH---HHHHhcCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccch-----h-----HHHHHhCCeEEEeC
Confidence            4332   22221  22468999999999999999999999999999999987654     1     45688999999999


Q ss_pred             CeEEEEEeCCCCcEEEEEeCC-------C--cEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeCCCCC-----CCCC
Q 011351          270 ASIKNLEAGSDGRVAAVKLED-------G--STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFR-----TRMP  335 (488)
Q Consensus       270 ~~v~~i~~~~~~~v~~v~l~~-------g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~-----t~~~  335 (488)
                      +.+++++..+++++..|.+.+       |  ++++||.|++++|++|++++++..     .++|.+|++++     |+.|
T Consensus       337 ~~v~~i~~~~~~~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~~P~~~l~~~~-----~g~i~vd~~~~~~v~~ts~p  411 (965)
T 2gag_A          337 SVVVDTEADENGELSAIVVAELDEARELGGTQRFEADVLAVAGGFNPVVHLHSQR-----QGKLDWDTTIHAFVPADAVA  411 (965)
T ss_dssp             EEEEEEEECTTSCEEEEEEEEECTTCCEEEEEEEECSEEEEECCEEECCHHHHHT-----TCCEEEETTTTEEEECSCCT
T ss_pred             CEeEEEeccCCCCEEEEEEEeccccCCCCceEEEEcCEEEECCCcCcChHHHHhC-----CCcEEEcCcccccccCCCCC
Confidence            999999853245555666654       5  679999999999999999887765     36899999887     8999


Q ss_pred             CEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 011351          336 GIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  376 (488)
Q Consensus       336 ~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~  376 (488)
                      +|||+|||+..+.           ...|..+|+.+|.+|++
T Consensus       412 ~IyAaGD~a~~~~-----------l~~A~~~G~~aA~~i~~  441 (965)
T 2gag_A          412 NQHLAGAMTGRLD-----------TASALSTGAATGAAAAT  441 (965)
T ss_dssp             TEEECGGGGTCCS-----------HHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEecCCchh-----------HHHHHHHHHHHHHHHHH
Confidence            9999999998632           23588899999998864

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=99.97  E-value=1.7e-30  Score=265.29  Aligned_cols=314  Identities=14%  Similarity=0.084  Sum_probs=191.5

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCC---CcEEEEcCCCCCCCCCCCCCccccCC------C--CCCCCCCCCcc---
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMAD---GRLCIVSKEAYAPYERPALTKGYLFP------L--DKKPARLPGFH---  115 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~---~~V~lie~~~~~~~~~~~l~~~~~~~------~--~~~~~~~~~~~---  115 (488)
                      .++||+|||||+||+++|..|++.|. +   .+|+|||+++...|....+..+....      .  ...+.....+.   
T Consensus        29 ~~~dVvIIGaG~aGl~aA~~L~~~g~-~~~~~~v~liE~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~l  107 (463)
T 3s5w_A           29 VVHDLIGVGFGPSNIALAIALQERAQ-AQGALEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNYL  107 (463)
T ss_dssp             CEESEEEECCSHHHHHHHHHHHHHHH-HHCCCCEEEEESCSSCCSSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhccc-ccCcccEEEEecCCCCCCcCCCCCCCCcCCcchhhccccccCCCCCCChhHhh
Confidence            35699999999999999999999982 1   38999999987665421111000000      0  00000000000   


Q ss_pred             cccC---------C------CCCCCCHhHHHHCCCeEEeCCcEEEEeCC---Cc----EEEeCCCc----EEEeccEEec
Q 011351          116 TCVG---------S------GGERQTPEWYKEKGIEMIYQDPVTSIDIE---KQ----TLITNSGK----LLKYGSLIVA  169 (488)
Q Consensus       116 ~~~~---------~------~~~~~~~~~~~~~~i~~~~~~~v~~id~~---~~----~v~~~~g~----~i~yd~lVlA  169 (488)
                      ...+         .      ++..+...+.++.+++++++++|++++++   .+    +|++.+++    ++.||+||+|
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlA  187 (463)
T 3s5w_A          108 HKHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVS  187 (463)
T ss_dssp             HHTTCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEEC
T ss_pred             hhcCceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEEC
Confidence            0000         0      00000111223457889999899999876   43    66666765    7999999999


Q ss_pred             cCCCCCcCCC-CCCCCCC-cEEEecCHHH-HHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCcCcc
Q 011351          170 TGCTASRFPE-KIGGYLP-GVHYIRDVAD-ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQ  244 (488)
Q Consensus       170 tG~~~~~~~~-~~g~~~~-gv~~~~~~~~-~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~--g~~v~lv~~~~~~l~  244 (488)
                      ||+.|. .|. ..+.... .+.+.....+ .+.+......+++|+|||+|.+|+|+|..|.+.  +.+|++++|.+.+++
T Consensus       188 tG~~p~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~~p  266 (463)
T 3s5w_A          188 PGGTPR-IPQVFRALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASALKP  266 (463)
T ss_dssp             CCCEEC-CCGGGGGGTTCTTEEEGGGHHHHHCC-------CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSCCB
T ss_pred             CCCCCC-CcchhhhcCCCCcEEECHHHHhhHHHhhhcccCCCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCCcC
Confidence            999765 343 2221111 3333322221 111211112588999999999999999999998  889999999987755


Q ss_pred             cc-------------------cCHHHHHHHHHHHHH--------------------------cCcEEEcCCeEEEEEeCC
Q 011351          245 RL-------------------FTPSLAQRYEQLYQQ--------------------------NGVKFVKGASIKNLEAGS  279 (488)
Q Consensus       245 ~~-------------------~~~~~~~~~~~~l~~--------------------------~GV~v~~~~~v~~i~~~~  279 (488)
                      ..                   +++.....+.+.+..                          .||++++++.|++++.++
T Consensus       267 ~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~~~~~v~~v~~~~  346 (463)
T 3s5w_A          267 ADDSPFVNEVFAPKFTDLIYSREHAERERLLREYHNTNYSVVDTDLIERIYGVFYRQKVSGIPRHAFRCMTTVERATATA  346 (463)
T ss_dssp             CCCCHHHHGGGSHHHHHHHHHSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCCCCSEEETTEEEEEEEEET
T ss_pred             ccCCccchhccChhHHHHHhcCCHHHHHHHHHHhhccCCCcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCCEEEEEEecC
Confidence            21                   122222222222222                          599999999999998643


Q ss_pred             CCcEEEEEeC---CCcE--EEcCEEEEeecCccC--ChhhhhcCCcccCCCEEeCCCCCCC-----CCCEEEEceecccC
Q 011351          280 DGRVAAVKLE---DGST--IDADTIVIGIGAKPT--VSPFERVGLNSSVGGIQVDGQFRTR-----MPGIFAIGDVAAFP  347 (488)
Q Consensus       280 ~~~v~~v~l~---~g~~--i~~D~vi~a~G~~p~--~~~~~~~gl~~~~g~i~vd~~~~t~-----~~~Ifa~GD~a~~~  347 (488)
                       +. ..+.+.   +|+.  +++|.||+|||++|+  .++++.+....  |++.||+++++.     .|+|||+|||....
T Consensus       347 -~~-~~v~~~~~~~g~~~~~~~D~Vv~AtG~~p~~~~~~l~~l~~~~--g~i~v~~~~~~~~~~~~~~~Ifa~G~~~~~~  422 (463)
T 3s5w_A          347 -QG-IELALRDAGSGELSVETYDAVILATGYERQLHRQLLEPLAEYL--GDHEIGRDYRLQTDERCKVAIYAQGFSQASH  422 (463)
T ss_dssp             -TE-EEEEEEETTTCCEEEEEESEEEECCCEECCC-CTTTGGGGGGB--C--CCCTTSBCCBCTTBCSEEEESSCCHHHH
T ss_pred             -CE-EEEEEEEcCCCCeEEEECCEEEEeeCCCCCCccchhHHHHHHh--CCcccCcccccccCCCCCCeEEEcCCCcccC
Confidence             33 345555   6654  999999999999999  66776654433  789999999873     46799999998643


Q ss_pred             CccCCcccccccHHHHHHHHHHHHHHH
Q 011351          348 LKMYDRTARVEHVDHARQSAQHCIKAL  374 (488)
Q Consensus       348 ~~~~~~~~~~~~~~~A~~~g~~~a~~i  374 (488)
                      .....     ..-..|.+++++++..+
T Consensus       423 g~~~~-----~l~~~a~r~~~i~~~~~  444 (463)
T 3s5w_A          423 GLSDT-----LLSVLPVRAEEISGSLY  444 (463)
T ss_dssp             CTTTT-----SSTTHHHHHHHHHHHHH
T ss_pred             CcCcc-----chhHHHHHHHHHHHHHH
Confidence            22111     11223666676654443

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.97  E-value=2.4e-30  Score=265.25  Aligned_cols=253  Identities=16%  Similarity=0.165  Sum_probs=189.4

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (488)
                      ++||+|||||+||+++|.+|++. +   +|+|||+++...+.....+.... .       +++    .    ......++
T Consensus       108 ~~dVvIIGgG~aGl~aA~~L~~~-~---~V~vie~~~~~GG~~~~~~~~~~-g-------~~~----~----~~~~~~~l  167 (493)
T 1y56_A          108 VVDVAIIGGGPAGIGAALELQQY-L---TVALIEERGWLGGDMWLKGIKQE-G-------FNK----D----SRKVVEEL  167 (493)
T ss_dssp             EESCCEECCSHHHHHHHHHHTTT-C---CEEEECTTSSSSCSGGGTCSEET-T-------TTE----E----HHHHHHHH
T ss_pred             cCCEEEECccHHHHHHHHHHHhc-C---CEEEEeCCCCCCCeeeccccccC-C-------CCC----C----HHHHHHHH
Confidence            46899999999999999999998 5   89999999876554322211110 0       000    0    00011121


Q ss_pred             H---HCCCeEEeCCcEEEEeCCCcEEEe---CCCc--EEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHH
Q 011351          131 K---EKGIEMIYQDPVTSIDIEKQTLIT---NSGK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS  202 (488)
Q Consensus       131 ~---~~~i~~~~~~~v~~id~~~~~v~~---~~g~--~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~  202 (488)
                      .   ..+++++.+++|.+++.+.+.+.+   ++++  .+.||+||||||+.+. .+++++.+.+++++..   +...+.+
T Consensus       168 ~~~l~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~-~~~~~g~~~~gv~~~~---~~~~~~~  243 (493)
T 1y56_A          168 VGKLNENTKIYLETSALGVFDKGEYFLVPVVRGDKLIEILAKRVVLATGAIDS-TMLFENNDMPGVFRRD---FALEVMN  243 (493)
T ss_dssp             HHTCCTTEEEETTEEECCCEECSSSEEEEEEETTEEEEEEESCEEECCCEEEC-CCCCTTTTSTTEEEHH---HHHHHHH
T ss_pred             HHHHhcCCEEEcCCEEEEEEcCCcEEEEEEecCCeEEEEECCEEEECCCCCcc-CCCCCCCCCCCEEEcH---HHHHHHH
Confidence            1   348888888888888877653322   4454  6899999999999886 4557787788887653   3334433


Q ss_pred             h--hhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCC
Q 011351          203 S--LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD  280 (488)
Q Consensus       203 ~--~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~  280 (488)
                      .  ...+++++|+|+|.+|+|                                   +.+++.||++++++.+++++.+  
T Consensus       244 ~~~~~~~~~vvViGgG~~gle-----------------------------------~~l~~~GV~v~~~~~v~~i~~~--  286 (493)
T 1y56_A          244 VWEVAPGRKVAVTGSKADEVI-----------------------------------QELERWGIDYVHIPNVKRVEGN--  286 (493)
T ss_dssp             TSCBCSCSEEEEESTTHHHHH-----------------------------------HHHHHHTCEEEECSSEEEEECS--
T ss_pred             hcccCCCCEEEEECCCHHHHH-----------------------------------HHHHhCCcEEEeCCeeEEEecC--
Confidence            3  235689999999999988                                   4567889999999999999843  


Q ss_pred             CcEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcCCcc---cCCCEE-eCCCCCCCCCCEEEEceecccCCccCCcccc
Q 011351          281 GRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNS---SVGGIQ-VDGQFRTRMPGIFAIGDVAAFPLKMYDRTAR  356 (488)
Q Consensus       281 ~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~---~~g~i~-vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~  356 (488)
                      +.+..+.+.+|+++++|.||+++|++|+.++++.+|+..   .+|++. ||++++ +.|+|||+|||+..+         
T Consensus       287 ~~v~~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~g~~~~~~~~g~i~~vd~~~~-s~~~vya~GD~~~~~---------  356 (493)
T 1y56_A          287 EKVERVIDMNNHEYKVDALIFADGRRPDINPITQAGGKLRFRRGYYSPVLDEYHR-IKDGIYVAGSAVSIK---------  356 (493)
T ss_dssp             SSCCEEEETTCCEEECSEEEECCCEEECCHHHHHTTCCEEEETTEEEECCCTTSE-EETTEEECSTTTCCC---------
T ss_pred             CceEEEEeCCCeEEEeCEEEECCCcCcCchHHHhcCCCccccCCceeeccccccC-cCCCEEEEeccCCcc---------
Confidence            345567788999999999999999999999999998864   256676 899999 999999999999742         


Q ss_pred             cccHHHHHHHHHHHHHHHhc
Q 011351          357 VEHVDHARQSAQHCIKALLS  376 (488)
Q Consensus       357 ~~~~~~A~~~g~~~a~~i~~  376 (488)
                        .+..|..+|+.+|.+|.+
T Consensus       357 --~~~~A~~~g~~aa~~i~~  374 (493)
T 1y56_A          357 --PHYANYLEGKLVGAYILK  374 (493)
T ss_dssp             --CHHHHHHHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHHHHHHHH
Confidence              455688999999999876

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=99.96  E-value=1.1e-29  Score=270.13  Aligned_cols=262  Identities=18%  Similarity=0.206  Sum_probs=187.8

Q ss_pred             CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCH
Q 011351           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP  127 (488)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (488)
                      ...+++|+|||||+||++||..|++.|+   +|+|||+++...+. ..+..  ..+...   .   +..     ......
T Consensus       370 ~~~~~~vvIIGgG~AGl~aA~~l~~~g~---~V~lie~~~~~gg~-~~~~~--~~~~~~---~---~~~-----~~~~~~  432 (671)
T 1ps9_A          370 AVQKKNLAVVGAGPAGLAFAINAAARGH---QVTLFDAHSEIGGQ-FNIAK--QIPGKE---E---FYE-----TLRYYR  432 (671)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHTTTC---EEEEEESSSSSCTT-HHHHT--TSTTCT---T---HHH-----HHHHHH
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHhCCC---eEEEEeCCCCCCCe-eeccc--cCCCHH---H---HHH-----HHHHHH
Confidence            3456899999999999999999999887   89999998765433 11110  000000   0   000     001233


Q ss_pred             hHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEE-EeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhc
Q 011351          128 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLL-KYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK  206 (488)
Q Consensus       128 ~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i-~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~  206 (488)
                      +++++.++++++++.|..             ..+ .||+||||||+.+. .|.++|.+.+++++..     +.+......
T Consensus       433 ~~~~~~gv~~~~~~~v~~-------------~~~~~~d~lviAtG~~p~-~~~i~G~~~~~v~~~~-----~~l~~~~~~  493 (671)
T 1ps9_A          433 RMIEVTGVTLKLNHTVTA-------------DQLQAFDETILASGIVPR-TPPIDGIDHPKVLSYL-----DVLRDKAPV  493 (671)
T ss_dssp             HHHHHHTCEEEESCCCCS-------------SSSCCSSEEEECCCEEEC-CCCCBTTTSTTEEEHH-----HHHTSCCCC
T ss_pred             HHHHHcCCEEEeCcEecH-------------HHhhcCCEEEEccCCCcC-CCCCCCCCCCcEeeHH-----HHhhCCCCC
Confidence            456678999998865531             114 89999999999886 4556776556666532     222222345


Q ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC-------------------------------------cEEEEecCCcCcccccCH
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGWKL-------------------------------------DTTIIFPENHLLQRLFTP  249 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~-------------------------------------~v~lv~~~~~~l~~~~~~  249 (488)
                      +++++|||+|.+|+|+|..|.+.|.                                     +|+++++.+..+.+.+++
T Consensus       494 ~~~VvVIGgG~~g~E~A~~l~~~G~~vtv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~l~~~l~~  573 (671)
T 1ps9_A          494 GNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGK  573 (671)
T ss_dssp             CSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGGGBCTTCCCCCCCSSEEEEECSSCSCTTTTSCT
T ss_pred             CCeEEEECCChhHHHHHHHHHhcCCCcccchhhhhhhhcccccccccccccccccccCCCCcEEEEEEecchhhcccccc
Confidence            7999999999999999999998763                                     456777777666666777


Q ss_pred             HHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCC--cEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeC
Q 011351          250 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVD  327 (488)
Q Consensus       250 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd  327 (488)
                      .....+.+.|++.||++++++++++++.  ++ + .+. .+|  +++++|.||+|+|++|++++++.+.           
T Consensus       574 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~--~~-v-~~~-~~G~~~~i~~D~Vi~a~G~~p~~~l~~~l~-----------  637 (671)
T 1ps9_A          574 TTGWIHRTTLLSRGVKMIPGVSYQKIDD--DG-L-HVV-INGETQVLAVDNVVICAGQEPNRALAQPLI-----------  637 (671)
T ss_dssp             TTHHHHHHHHHHTTCEEECSCEEEEEET--TE-E-EEE-ETTEEEEECCSEEEECCCEEECCTTHHHHH-----------
T ss_pred             ccHHHHHHHHHhcCCEEEeCcEEEEEeC--Ce-E-EEe-cCCeEEEEeCCEEEECCCccccHHHHHHHH-----------
Confidence            7778888999999999999999999973  22 2 222 577  5799999999999999988876531           


Q ss_pred             CCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHH
Q 011351          328 GQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL  374 (488)
Q Consensus       328 ~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i  374 (488)
                          ...++||++|||+.....         .+..|.+||..+|.+|
T Consensus       638 ----~~g~~v~aiGD~~~~~~~---------~~~~A~~~g~~aA~~i  671 (671)
T 1ps9_A          638 ----DSGKTVHLIGGCDVAMEL---------DARRAIAQGTRLALEI  671 (671)
T ss_dssp             ----TTTCCEEECGGGTCCSSC---------CHHHHHHHHHHHHHHC
T ss_pred             ----hcCCCEEEECCcCccCch---------hHHHHHHHHHHHHHhC
Confidence                122689999999985421         4667999999999875

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=99.96  E-value=8.7e-29  Score=251.20  Aligned_cols=289  Identities=11%  Similarity=0.080  Sum_probs=189.0

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC----CCCC-C----CCc---cc----cCC-------CC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP----YERP-A----LTK---GY----LFP-------LD  105 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~----~~~~-~----l~~---~~----~~~-------~~  105 (488)
                      ++.++|+|||||++|+++|..|++.|. ..+|+|||+.+...    |... .    .+.   .+    +..       ..
T Consensus         4 ~~~~dV~IIGaG~aGl~aA~~L~~~G~-~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~   82 (447)
T 2gv8_A            4 PTIRKIAIIGAGPSGLVTAKALLAEKA-FDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPS   82 (447)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHTTTC-CSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCC
T ss_pred             CCCCEEEEECccHHHHHHHHHHHhcCC-CCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccC
Confidence            446899999999999999999999876 44899999986432    1110 0    000   00    000       00


Q ss_pred             CCCC-----------CCCCcccccCCCC-------CCCCHhHHHHCCCeEEeCCcEEEEeCCCc--EEEeCC---Cc---
Q 011351          106 KKPA-----------RLPGFHTCVGSGG-------ERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNS---GK---  159 (488)
Q Consensus       106 ~~~~-----------~~~~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~---g~---  159 (488)
                      ....           .+.++........       ...+.++.++.+..++++++|+.++....  +|++.+   |+   
T Consensus        83 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~~~~~~~G~~~~  162 (447)
T 2gv8_A           83 PLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPIS  162 (447)
T ss_dssp             CCCTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEE
T ss_pred             chhhhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCeEEEEEeecCCCCeeE
Confidence            0000           0000000000000       00112233344667888899999987654  566655   66   


Q ss_pred             EEEeccEEeccCC--CCCcCCCCCCCC-----CCc-EEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCC
Q 011351          160 LLKYGSLIVATGC--TASRFPEKIGGY-----LPG-VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKL  231 (488)
Q Consensus       160 ~i~yd~lVlAtG~--~~~~~~~~~g~~-----~~g-v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~  231 (488)
                      ++.||+||+|||.  .|. .|.++|.+     .++ +.+..++.+..     ...+++|+|||+|.+|+|+|..|.+.+.
T Consensus       163 ~~~~d~VVvAtG~~s~p~-~p~i~G~~~~~~~~~g~v~~~~~~~~~~-----~~~~k~VvVvG~G~sg~e~A~~l~~~~~  236 (447)
T 2gv8_A          163 KDIFDAVSICNGHYEVPY-IPNIKGLDEYAKAVPGSVLHSSLFREPE-----LFVGESVLVVGGASSANDLVRHLTPVAK  236 (447)
T ss_dssp             EEEESEEEECCCSSSSBC-BCCCBTHHHHHHHSTTSEEEGGGCCCGG-----GGTTCCEEEECSSHHHHHHHHHHTTTSC
T ss_pred             EEEeCEEEECCCCCCCCC-CCCCCChhhhhccCCccEEEecccCChh-----hcCCCEEEEEccCcCHHHHHHHHHHHhC
Confidence            7999999999998  443 34444422     122 34333222211     1258999999999999999999999999


Q ss_pred             c-EEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcE-EEcCEEEEeecCccCC
Q 011351          232 D-TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST-IDADTIVIGIGAKPTV  309 (488)
Q Consensus       232 ~-v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~-i~~D~vi~a~G~~p~~  309 (488)
                      + |+++++.+.+                +++.||.+  +..|+++..+ ++   .|.+.||++ +++|.||+|||++|+.
T Consensus       237 ~~V~l~~r~~~~----------------l~~~~i~~--~~~v~~~~~~-~~---~v~~~dG~~~~~~D~vi~atG~~~~~  294 (447)
T 2gv8_A          237 HPIYQSLLGGGD----------------IQNESLQQ--VPEITKFDPT-TR---EIYLKGGKVLSNIDRVIYCTGYLYSV  294 (447)
T ss_dssp             SSEEEECTTCCS----------------CBCSSEEE--ECCEEEEETT-TT---EEEETTTEEECCCSEEEECCCBCCCC
T ss_pred             CcEEEEeCCCCc----------------CCCCCeEE--ecCeEEEecC-CC---EEEECCCCEeccCCEEEECCCCCcCC
Confidence            9 9999998765                33457774  4678888632 22   578899986 7999999999999999


Q ss_pred             hh-----hhhc--CCcccCCCEEeCCCCC---CCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCC
Q 011351          310 SP-----FERV--GLNSSVGGIQVDGQFR---TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ  378 (488)
Q Consensus       310 ~~-----~~~~--gl~~~~g~i~vd~~~~---t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~  378 (488)
                      ++     ++++  ++.. ++.+.++.+.+   ++.|+||++||+....           .+..|..||+.+|+++.+..
T Consensus       295 ~~l~~~~l~~~~~~i~~-~~~~~~~~~~~v~~~~~p~l~~~G~~~~~~-----------~~~~a~~qa~~~a~~~~g~~  361 (447)
T 2gv8_A          295 PFPSLAKLKSPETKLID-DGSHVHNVYQHIFYIPDPTLAFVGLALHVV-----------PFPTSQAQAAFLARVWSGRL  361 (447)
T ss_dssp             CCHHHHSCCSTTTCCCS-SSSSCCSEETTTEETTCTTEEESSCCBSSC-----------HHHHHHHHHHHHHHHHTTSS
T ss_pred             CCCcccccccccCceec-CCCcccccccccccCCCCcEEEEecccccc-----------CchHHHHHHHHHHHHHcCCC
Confidence            98     6654  2333 24455555555   6899999999997632           45678999999999998754

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.95  E-value=1.2e-27  Score=246.93  Aligned_cols=300  Identities=17%  Similarity=0.213  Sum_probs=190.5

Q ss_pred             CCCeEEEEcCchHHHHHHHHHH-HcCCCCCcEEEEcCCCCCCC-----CCCCC----C-ccccCCCCCC---CCCCCCcc
Q 011351           50 ENREFVIVGGGNAAGYAARTFV-EHGMADGRLCIVSKEAYAPY-----ERPAL----T-KGYLFPLDKK---PARLPGFH  115 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~-~~g~~~~~V~lie~~~~~~~-----~~~~l----~-~~~~~~~~~~---~~~~~~~~  115 (488)
                      +++||+|||||+||+++|..|+ +.|.   +|+|||+++....     ..|..    + ..+.+.....   ...+... 
T Consensus         7 ~~~dVvIIGaG~aGl~aA~~L~~~~G~---~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~-   82 (540)
T 3gwf_A            7 HTVDAVVIGAGFGGIYAVHKLHHELGL---TTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTT-   82 (540)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCC---CEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBS-
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCC---CEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCccc-
Confidence            3579999999999999999999 8776   8999999764321     11111    0 0011100000   0000000 


Q ss_pred             cccCCCCCCCCHhHHHHCCC--eEEeCCcEEEEeCCCc----EEEeCCCcEEEeccEEeccCC--CCCcCCCCCCCC-CC
Q 011351          116 TCVGSGGERQTPEWYKEKGI--EMIYQDPVTSIDIEKQ----TLITNSGKLLKYGSLIVATGC--TASRFPEKIGGY-LP  186 (488)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~i--~~~~~~~v~~id~~~~----~v~~~~g~~i~yd~lVlAtG~--~~~~~~~~~g~~-~~  186 (488)
                      .....+...+.....++.++  +++++++|++++.+..    +|++++|+++.||+||+|||.  .+. .|.++|.+ ..
T Consensus        83 ~~~~~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~-~p~ipG~~~f~  161 (540)
T 3gwf_A           83 YITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAIN-FPNLPGLDTFE  161 (540)
T ss_dssp             EEEHHHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBC-CCCCTTGGGCC
T ss_pred             CCCHHHHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCC-CCCCCCccccC
Confidence            00000011122344566787  7888999999987655    788899999999999999994  554 45555533 22


Q ss_pred             cEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccC----HHHHHHHH------
Q 011351          187 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFT----PSLAQRYE------  256 (488)
Q Consensus       187 gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~----~~~~~~~~------  256 (488)
                      +.....    ..........+|+|+|||+|.+|+|+|..|++.+.+|++++|.+.++...++    +...+.++      
T Consensus       162 g~~~~~----~~~~~~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~~~~~~~  237 (540)
T 3gwf_A          162 GETIHT----AAWPEGKSLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVPVGNRPVNPEQIAEIKADYDRI  237 (540)
T ss_dssp             SEEEEG----GGCCSSCCCTTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCCCEEECCCCBCCHHHHHHHHHTHHHH
T ss_pred             CCEEEe----ecCCCccccccceEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCccCCCCHHHHHHHHhccHHH
Confidence            321111    0000112246899999999999999999999999999999999874221222    22111111      


Q ss_pred             -------------------------------------------------------------------HH-----------
Q 011351          257 -------------------------------------------------------------------QL-----------  258 (488)
Q Consensus       257 -------------------------------------------------------------------~~-----------  258 (488)
                                                                                         +.           
T Consensus       238 ~~~~~~~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dp~~~  317 (540)
T 3gwf_A          238 WERAKNSAVAFGFEESTLPAMSVSEEERNRIFQEAWDHGGGFRFMFGTFGDIATDEAANEAAASFIRAKVAEIIEDPETA  317 (540)
T ss_dssp             HHHHHTSSSCSSSCCCCCCGGGSCHHHHHHHHHHHHHHCCHHHHHHTSCSCTTTCHHHHHHHHHHHHHHHHHHCCSHHHH
T ss_pred             HHHHHhccccccccccchhhhhCCHHHHHHHHHHHHhcccchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence                                                                               00           


Q ss_pred             ----------------------HHHcCcEEEc--CCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhh
Q 011351          259 ----------------------YQQNGVKFVK--GASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER  314 (488)
Q Consensus       259 ----------------------l~~~GV~v~~--~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~  314 (488)
                                            +.+.+|+++.  +..|++++++      +|.++||+++++|.||+|||++++..++..
T Consensus       318 ~~l~P~~~g~kR~~~~~~y~~~l~~~nV~lv~~~~~~I~~it~~------gv~~~dG~~~~~DvIV~ATGf~~~~~~~~~  391 (540)
T 3gwf_A          318 RKLMPKGLFAKRPLCDSGYYEVYNRPNVEAVAIKENPIREVTAK------GVVTEDGVLHELDVLVFATGFDAVDGNYRR  391 (540)
T ss_dssp             HHHCCCSCCCSSCEEESSTGGGGGSTTEEEEETTTSCEEEECSS------EEEETTCCEEECSEEEECCCBSCSSHHHHT
T ss_pred             HhCCCCCCCccccCCCccHHHHhcCCCEEEEeCCCCCccEEecC------eEEcCCCCEEECCEEEECCccCccccCcCc
Confidence                                  1144788885  6789999753      688999999999999999999999767766


Q ss_pred             cCCcccCCCEEeCCC----------CCC-CCCCEEEE-ceecccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 011351          315 VGLNSSVGGIQVDGQ----------FRT-RMPGIFAI-GDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  375 (488)
Q Consensus       315 ~gl~~~~g~i~vd~~----------~~t-~~~~Ifa~-GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~  375 (488)
                      .++... +|+.+++.          +.+ +.||+|++ |+.+...+          ....+..|++++++.|.
T Consensus       392 ~~i~g~-~G~~l~~~w~~~~~~y~g~~v~gfPN~f~~~Gp~~~~~s----------~~~~~e~q~~~i~~~i~  453 (540)
T 3gwf_A          392 IEIRGR-DGLHINDHWDGQPTSYLGVSTANFPNWFMVLGPNGPFTN----------LPPSIETQVEWISDTIG  453 (540)
T ss_dssp             SEEECG-GGCBHHHHTSSSCCCBTTTBCTTCTTEEESSCSSCBCSC----------HHHHHHHHHHHHHHHHH
T ss_pred             ceEECC-CCcCHHHhhccChhhccccccCCCCceEEEecCCCCCcc----------HHHHHHHHHHHHHHHHH
Confidence            554322 34444432          222 78999999 87654111          23456777888877663

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=99.93  E-value=3.8e-26  Score=235.91  Aligned_cols=307  Identities=16%  Similarity=0.189  Sum_probs=183.5

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC-----CCCCC----Cc---cccCCCCC-CCCCCCCcc
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY-----ERPAL----TK---GYLFPLDK-KPARLPGFH  115 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~-----~~~~l----~~---~~~~~~~~-~~~~~~~~~  115 (488)
                      ++++||||||||+||+++|..|++.|.   +|+|||+++....     ..|..    ..   .+.+.... .........
T Consensus         7 ~~~~dVvIIGaG~aGl~aA~~L~~~g~---~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~   83 (545)
T 3uox_A            7 SPALDAVVIGAGVTGIYQAFLINQAGM---KVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENF   83 (545)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSS
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCC---CEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccC
Confidence            446799999999999999999999887   8999999865321     00110    00   00000000 000000000


Q ss_pred             cccCCCCCCCCHhHHHHCCC--eEEeCCcEEEEeCCCc----EEEeCCCcEEEeccEEeccC--CCCCcCCCCCCCC-CC
Q 011351          116 TCVGSGGERQTPEWYKEKGI--EMIYQDPVTSIDIEKQ----TLITNSGKLLKYGSLIVATG--CTASRFPEKIGGY-LP  186 (488)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~i--~~~~~~~v~~id~~~~----~v~~~~g~~i~yd~lVlAtG--~~~~~~~~~~g~~-~~  186 (488)
                       ....+...+.....++.++  .++++++|++++.+..    .|++++|+++.||+||+|||  +.+. .|.++|.+ ..
T Consensus        84 -~~~~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~-~p~ipG~~~f~  161 (545)
T 3uox_A           84 -ASQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASR-MPDIKGIDSFK  161 (545)
T ss_dssp             -CBHHHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC----CCCTTGGGCC
T ss_pred             -CCHHHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCc-CCCCCCccccC
Confidence             0000001122334456676  6888899999987654    88899999999999999999  6665 45555532 22


Q ss_pred             cE--EEecCHHHHHHHH-HhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcC-cccc---cCHHHHHHH----
Q 011351          187 GV--HYIRDVADADALI-SSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL-LQRL---FTPSLAQRY----  255 (488)
Q Consensus       187 gv--~~~~~~~~~~~~~-~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~-l~~~---~~~~~~~~~----  255 (488)
                      +.  ++.....+..... .....+|+|+|||+|.+|+|+|..|++.+.+|+++.|.+.+ ++..   +++.....+    
T Consensus       162 g~~~h~~~~~~~~~~~~~~~~~~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~~~~  241 (545)
T 3uox_A          162 GESFHSSRWPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNWCTPLGNSPMSKEKMDSLRNRY  241 (545)
T ss_dssp             SEEEEGGGCCBCTTSCBSCCCCBTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCCCCEECCCCBCCHHHHHHHHHTH
T ss_pred             CCeEEcccccccccccccccccCCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCCccccCCcCCCCHHHHHHHHhhh
Confidence            32  1111111000000 01236799999999999999999999999999999999874 3321   111111110    


Q ss_pred             --------------------------------------------------------------------------------
Q 011351          256 --------------------------------------------------------------------------------  255 (488)
Q Consensus       256 --------------------------------------------------------------------------------  255 (488)
                                                                                                      
T Consensus       242 p~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~  321 (545)
T 3uox_A          242 PTILEYVKSTDTAFPYHRDPRKGTDVSESERDAFFEELYRQPGYGIWLSGFRDLLLNKESNKFLADFVAKKIRQRVKDPV  321 (545)
T ss_dssp             HHHHHHHTTSSSSSSCCCBSSCGGGSCHHHHHHHHHHHHHSSSTHHHHTSBTTTTTCHHHHHHHHHHHHHHHHHHCSCHH
T ss_pred             HHHHHHHhhcccccccccccchhhhCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHH
Confidence                                                                                            


Q ss_pred             -----------------------HHHHHHcCcEEEc--CCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCCh
Q 011351          256 -----------------------EQLYQQNGVKFVK--GASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  310 (488)
Q Consensus       256 -----------------------~~~l~~~GV~v~~--~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~  310 (488)
                                             .+.|.+.+|+++.  +..|++|+++      +|.++|| ++++|.||+|||+++++.
T Consensus       322 ~~~~l~P~~~~~g~kR~~~~~~y~~al~~~nV~lv~~~~~~I~~it~~------gv~~~dG-~~~~D~IV~ATGf~~~~~  394 (545)
T 3uox_A          322 VAEKLIPKDHPFGAKRVPMETNYYETYNRDNVHLVDIREAPIQEVTPE------GIKTADA-AYDLDVIIYATGFDAVTG  394 (545)
T ss_dssp             HHHHTSCSSSCTTSSCCCEESSHHHHTTSTTEEEEETTTSCEEEEETT------EEEESSC-EEECSEEEECCCCBSSSC
T ss_pred             HHHhCCCCCCCCCCCccCCCccHHHHhcCCCEEEEecCCCCceEEccC------eEEeCCC-eeecCEEEECCccccccc
Confidence                                   1112233788885  6789999853      6889999 999999999999998766


Q ss_pred             hhhhcCCcccCCCEEeCCCC-----------CCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 011351          311 PFERVGLNSSVGGIQVDGQF-----------RTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  375 (488)
Q Consensus       311 ~~~~~gl~~~~g~i~vd~~~-----------~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~  375 (488)
                      ++....+.. .+|+.+++.+           -.+.||+|.+.    .|+...+.   ......+..|++++++.|.
T Consensus       395 ~~~~~~i~g-~~G~~l~~~w~~~~~~y~g~~~~gfPN~f~~~----gp~~~~~~---~s~~~~~e~~~~~i~~~i~  462 (545)
T 3uox_A          395 SLDRIDIRG-KDNVRLIDAWAEGPSTYLGLQARGFPNFFTLV----GPHNGSTF---CNVGVCGGLQAEWVLRMIS  462 (545)
T ss_dssp             SCTTSEEEC-GGGCBHHHHTTTSCCCBTTTBCTTCTTEEECS----SGGGTGGG---SCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCceEEC-CCCccHHHhhccccceeeccccCCCCcEEEEe----CCCCCCcc---ccHHHHHHHHHHHHHHHHH
Confidence            655444322 2344444321           12789999883    12211111   1123446778888887663

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=99.93  E-value=3.6e-25  Score=228.86  Aligned_cols=304  Identities=17%  Similarity=0.202  Sum_probs=184.3

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC----C-CCCC----C-ccccCCCCCC---CCCCCCcc
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY----E-RPAL----T-KGYLFPLDKK---PARLPGFH  115 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~----~-~~~l----~-~~~~~~~~~~---~~~~~~~~  115 (488)
                      +++++|||||||+||+++|..|++.|+   +|+|||+++....    . .|..    . ..+.+.....   ....... 
T Consensus        19 ~~~~dVvIIGaG~aGl~aA~~L~~~G~---~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~-   94 (549)
T 4ap3_A           19 TTSYDVVVVGAGIAGLYAIHRFRSQGL---TVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEK-   94 (549)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSS-
T ss_pred             CCCCCEEEECchHHHHHHHHHHHhCCC---CEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccC-
Confidence            345799999999999999999999887   8999999764320    0 0111    0 0000000000   0000000 


Q ss_pred             cccCCCCCCCCHhHHHHCCC--eEEeCCcEEEEeCCCc----EEEeCCCcEEEeccEEeccC--CCCCcCCCCCCCC-CC
Q 011351          116 TCVGSGGERQTPEWYKEKGI--EMIYQDPVTSIDIEKQ----TLITNSGKLLKYGSLIVATG--CTASRFPEKIGGY-LP  186 (488)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~i--~~~~~~~v~~id~~~~----~v~~~~g~~i~yd~lVlAtG--~~~~~~~~~~g~~-~~  186 (488)
                      ...+.+...+....+++.++  .++++++|++++.+..    +|++++|+++.||+||+|||  +.|. .|.++|.+ ..
T Consensus        95 ~~~~~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~-~p~ipG~~~f~  173 (549)
T 4ap3_A           95 YATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNAN-TPAFDGLDRFT  173 (549)
T ss_dssp             SCBHHHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECC-CCCCTTGGGCC
T ss_pred             CCCHHHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCC-CCCCCCcccCC
Confidence            00000001122334566777  7888999999987665    88899999999999999999  6665 45556543 23


Q ss_pred             cEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHH------------
Q 011351          187 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR------------  254 (488)
Q Consensus       187 gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~------------  254 (488)
                      +........+.+   .....+|+|+|||+|.+|+|+|..|++.+.+|+++.|.+.++....++.+...            
T Consensus       174 g~~~~~~~~~~~---~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~ilp~~~~~~~~~~~~~l~~~~~~~  250 (549)
T 4ap3_A          174 GDIVHTARWPHD---GVDFTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSANYSIPAGNVPLDDATRAEQKANYAER  250 (549)
T ss_dssp             SEEEEGGGCCTT---CCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECC----CHHHHHHHHHTHHHH
T ss_pred             CceEEecccccc---ccccCCCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCcCCCCCHHHHHHHHhccHHH
Confidence            321111000000   11136899999999999999999999999999999999874221122111111            


Q ss_pred             ---------------------------------------------------------------HHHH-------------
Q 011351          255 ---------------------------------------------------------------YEQL-------------  258 (488)
Q Consensus       255 ---------------------------------------------------------------~~~~-------------  258 (488)
                                                                                     +.+.             
T Consensus       251 ~~~~r~~~~~~~~~~~~~~~~~~~~e~r~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~  330 (549)
T 4ap3_A          251 RRLSRESGGGSPHRPHPKSALEVSEEERRAVYEERWKLGGVLFSKAFPDQLTDPAANDTARAFWEEKIRAVVDDPAVAEL  330 (549)
T ss_dssp             HHHHHHSSSSSSCCCCSSCTTSSCHHHHHHHHHHHHHHCHHHHTTSSTTTTTCHHHHHHHHHHHHHHHHHHCSCHHHHHH
T ss_pred             HHHHHhhccccccccCccchhcCCHHHHHHHHHHHHhhcchHHHhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHHHHh
Confidence                                                                           1111             


Q ss_pred             ----------------------HHHcCcEEE--cCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhh
Q 011351          259 ----------------------YQQNGVKFV--KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER  314 (488)
Q Consensus       259 ----------------------l~~~GV~v~--~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~  314 (488)
                                            +.+.+|+++  ....|++++++      +|.++|| ++++|.||+|||+++++.++..
T Consensus       331 l~P~~~~~~~kR~~~~~~y~~al~~~~V~lvd~~~~~I~~it~~------gv~~~dG-~~~~D~iI~ATGf~~~~~~~~~  403 (549)
T 4ap3_A          331 LTPKDHAIGAKRIVLDSGYYETYNRDNVELVDLRSTPIVGMDET------GIVTTGA-HYDLDMIVLATGFDAMTGSLDK  403 (549)
T ss_dssp             HSCSSCCBTTBCCEEESSTGGGGGSTTEEEEETTTSCEEEEETT------EEEESSC-EEECSEEEECCCEEESSTTGGG
T ss_pred             CCCCCCCCCccccCCCccHHHHhcCCCEEEEeCCCCCceEEeCC------cEEeCCC-ceecCEEEECCcccccccccCc
Confidence                                  122378887  24678898853      6889999 9999999999999998756666


Q ss_pred             cCCcccCCCEEeCCCCC-----------CCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 011351          315 VGLNSSVGGIQVDGQFR-----------TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  375 (488)
Q Consensus       315 ~gl~~~~g~i~vd~~~~-----------t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~  375 (488)
                      .++.. .+|+.+++.++           .+.||+|.+.    .|+...+.   ......+..|++++++.|.
T Consensus       404 ~~i~g-~~G~~l~~~w~~~~~~y~g~~~~gfPN~f~~~----Gp~~~~~~---~s~~~~~e~~~~~i~~~i~  467 (549)
T 4ap3_A          404 LEIVG-RGGRTLKETWAAGPRTYLGLGIDGFPNFFNLT----GPGSPSVL---ANMVLHSELHVDWVADAIA  467 (549)
T ss_dssp             SEEEC-GGGCBHHHHTTTSCCCBTTTBCTTCTTEEETT----CTTSCGGG---SCHHHHHHHHHHHHHHHHH
T ss_pred             eeEEC-CCCcCHHHhhccchhhccccccCCCCcEEEEe----CCCCCCcC---ccHHHHHHHHHHHHHHHHH
Confidence            54432 34555553321           2678888852    12111111   1123346677887777663

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=99.92  E-value=2.6e-24  Score=223.10  Aligned_cols=303  Identities=16%  Similarity=0.220  Sum_probs=183.6

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC-----CCCCCC---ccccCCCCCCC-----CCCCCcc
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY-----ERPALT---KGYLFPLDKKP-----ARLPGFH  115 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~-----~~~~l~---~~~~~~~~~~~-----~~~~~~~  115 (488)
                      +.++||+|||||++|+++|..|++.|+   +|+|||+++....     ..|...   ..........+     ...... 
T Consensus        14 ~~~~dVvIIGaG~aGl~aA~~L~~~G~---~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~-   89 (542)
T 1w4x_A           14 PEEVDVLVVGAGFSGLYALYRLRELGR---SVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTER-   89 (542)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBS-
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCC---CEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccc-
Confidence            345799999999999999999999987   8999999875320     001110   00000000000     000000 


Q ss_pred             cccCCCCCCCCHhHHHHCC--CeEEeCCcEEEEeCCC----cEEEeCCCcEEEeccEEeccCC--CCCcCCCCCCCC-CC
Q 011351          116 TCVGSGGERQTPEWYKEKG--IEMIYQDPVTSIDIEK----QTLITNSGKLLKYGSLIVATGC--TASRFPEKIGGY-LP  186 (488)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~--i~~~~~~~v~~id~~~----~~v~~~~g~~i~yd~lVlAtG~--~~~~~~~~~g~~-~~  186 (488)
                      .....+...+.....++.+  .+++++++|++++.+.    .+|++++|+++.||+||+|||.  .+. .|.++|.+ ..
T Consensus        90 ~~~~~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~s~p~-~p~i~G~~~f~  168 (542)
T 1w4x_A           90 YASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSVPQ-LPNFPGLKDFA  168 (542)
T ss_dssp             SCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCC-CCCCTTGGGCC
T ss_pred             cCCHHHHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCCCCCC-CCCCCCcccCC
Confidence            0000000011122234444  5688899999987643    3678888988999999999995  443 45555532 33


Q ss_pred             cEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc-ccc---cCHHHH----------
Q 011351          187 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-QRL---FTPSLA----------  252 (488)
Q Consensus       187 gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l-~~~---~~~~~~----------  252 (488)
                      +..........+   .....+|+|+|||+|.+|+|++..+.+.+.+|+++.|.+.+. ++.   +.+...          
T Consensus       169 G~~~hs~~~~~~---~~~~~gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~~~~p~~~~~~~~~~~~~~~~~~p~l  245 (542)
T 1w4x_A          169 GNLYHTGNWPHE---PVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFAVPARNAPLDPEFLADLKKRYAEF  245 (542)
T ss_dssp             SEEEEGGGCCSS---CCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECCCCBCCHHHHHHHHTTHHHH
T ss_pred             CceEECCCCCCc---hhccCCCEEEEECCCccHHHHHHHHhhcCceEEEEEcCCcccccCCCCCCCHHHHHHHHhhCHHH
Confidence            421111100000   011368999999999999999999999999999999987662 210   111110          


Q ss_pred             -------------------------------------------------------------HHHHHH-------------
Q 011351          253 -------------------------------------------------------------QRYEQL-------------  258 (488)
Q Consensus       253 -------------------------------------------------------------~~~~~~-------------  258 (488)
                                                                                   +.+++.             
T Consensus       246 ~~~~~~~~~G~~~~~d~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (542)
T 1w4x_A          246 REESRNTPGGTHRYQGPKSALEVSDEELVETLERYWQEGGPDILAAYRDILRDRDANERVAEFIRNKIRNTVRDPEVAER  325 (542)
T ss_dssp             HHHHHTSSSSSCCCCCCSCTTTSCHHHHHHHHHHHHHHCSGGGGGSSTTTTTCHHHHHHHHHHHHHHHHHHCSSHHHHHH
T ss_pred             HHHHHhhccccccCccccchhcCCHHHHHHHHHHHHhhcchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHcCCHHHHHh
Confidence                                                                         011111             


Q ss_pred             ----------------------HHHcCcEEE--cCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhh
Q 011351          259 ----------------------YQQNGVKFV--KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER  314 (488)
Q Consensus       259 ----------------------l~~~GV~v~--~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~  314 (488)
                                            +.+.+|+++  .+..|++++++      +|.++| +++++|.||+|||+++++.++..
T Consensus       326 l~P~~~~~~~kr~~~~~~y~~~~~~~~v~lv~~~~~~i~~i~~~------gv~~~d-~~~~~D~ii~atG~~~~~~~~~~  398 (542)
T 1w4x_A          326 LVPKGYPFGTKRLILEIDYYEMFNRDNVHLVDTLSAPIETITPR------GVRTSE-REYELDSLVLATGFDALTGALFK  398 (542)
T ss_dssp             HSCCSSCSSSSCCEEESSHHHHTTSTTEEEEETTTSCEEEECSS------EEEESS-CEEECSEEEECCCCCCTTHHHHT
T ss_pred             cCCCCCCccccCCCCCccHHHHhCCCCEEEEecCCCCceEEcCC------eEEeCC-eEEecCEEEEcCCccccccCcCc
Confidence                                  112356666  36678888643      688899 89999999999999998788776


Q ss_pred             cCCcccCCCEEeCCCCC----------C-CCCCEEEE-ceecccCCccCCcccccccH-HHHHHHHHHHHHHHhc
Q 011351          315 VGLNSSVGGIQVDGQFR----------T-RMPGIFAI-GDVAAFPLKMYDRTARVEHV-DHARQSAQHCIKALLS  376 (488)
Q Consensus       315 ~gl~~~~g~i~vd~~~~----------t-~~~~Ifa~-GD~a~~~~~~~~~~~~~~~~-~~A~~~g~~~a~~i~~  376 (488)
                      .++... +++.+++.++          + +.||+|++ |+.+..         ...++ ..+..|++.++++|..
T Consensus       399 ~~i~g~-~G~~l~~~w~~~~~~y~~~~v~~~Pn~f~~~G~~~~~---------~~~~~~~~~e~q~~~ia~~i~~  463 (542)
T 1w4x_A          399 IDIRGV-GNVALKEKWAAGPRTYLGLSTAGFPNLFFIAGPGSPS---------ALSNMLVSIEQHVEWVTDHIAY  463 (542)
T ss_dssp             SEEECG-GGCBHHHHTTTSCCCBTTTBCTTSTTEEESSCTTSSG---------GGSCHHHHHHHHHHHHHHHHHH
T ss_pred             eeeECC-CCCCHHHhhcCchheecccccCCCCceEEEcCCCCCc---------ccccHHHHHHHHHHHHHHHHHH
Confidence            655443 4555554332          1 45666665 655421         12244 5688899999998864

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.88  E-value=1.2e-21  Score=173.19  Aligned_cols=153  Identities=22%  Similarity=0.229  Sum_probs=130.2

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc--------cc-----CHHHHHHHHHHHHHcCcEEEcCCeEEEE
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LF-----TPSLAQRYEQLYQQNGVKFVKGASIKNL  275 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~--------~~-----~~~~~~~~~~~l~~~GV~v~~~~~v~~i  275 (488)
                      +++|||+|++|+++|..|.+.|.+|+++++.+.++.+        .+     ++++.+.+.+.+++.||+++++ +++++
T Consensus         3 ~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~v~~~-~v~~i   81 (180)
T 2ywl_A            3 DVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRLEAHARRYGAEVRPG-VVKGV   81 (180)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTCSCCCCSTTCTTCCCHHHHHHHHHHHHHHTTCEEEEC-CCCEE
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCchhhhccCCCcCCCCHHHHHHHHHHHHHHcCCEEEeC-EEEEE
Confidence            6899999999999999999999999999998866532        12     4678889999999999999999 99999


Q ss_pred             EeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeCCCCCCCCCCEEEEceecccCCccCCccc
Q 011351          276 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA  355 (488)
Q Consensus       276 ~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~  355 (488)
                      +.++++  ..+.+++| ++++|.||+|+|..|+  +++.++++.++|.+.||++++|+.|+|||+|||+..+.+      
T Consensus        82 ~~~~~~--~~v~~~~g-~i~ad~vI~A~G~~~~--~~~~~g~~~~~g~i~vd~~~~t~~~~i~a~GD~~~~~~~------  150 (180)
T 2ywl_A           82 RDMGGV--FEVETEEG-VEKAERLLLCTHKDPT--LPSLLGLTRRGAYIDTDEGGRTSYPRVYAAGVARGKVPG------  150 (180)
T ss_dssp             EECSSS--EEEECSSC-EEEEEEEEECCTTCCH--HHHHHTCCEETTEECCCTTCBCSSTTEEECGGGGTCCSC------
T ss_pred             EEcCCE--EEEEECCC-EEEECEEEECCCCCCC--ccccCCCCccCceEEeCCCCCcCCCCEEEeecccCcchh------
Confidence            865333  35778888 8999999999999984  567778877767789999999999999999999986532      


Q ss_pred             ccccHHHHHHHHHHHHHHHhc
Q 011351          356 RVEHVDHARQSAQHCIKALLS  376 (488)
Q Consensus       356 ~~~~~~~A~~~g~~~a~~i~~  376 (488)
                         .+..|..+|+.+|.+|.+
T Consensus       151 ---~~~~A~~~g~~aa~~i~~  168 (180)
T 2ywl_A          151 ---HAIISAGDGAYVAVHLVS  168 (180)
T ss_dssp             ---CHHHHHHHHHHHHHHHHH
T ss_pred             ---hHHHHHHhHHHHHHHHHH
Confidence               556788999999999975

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=99.81  E-value=8.8e-19  Score=179.54  Aligned_cols=292  Identities=17%  Similarity=0.220  Sum_probs=161.5

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCC-----------CCcEEEEcCCCCCCCCCCCCCcc------ccCCCC--CCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMA-----------DGRLCIVSKEAYAPYERPALTKG------YLFPLD--KKPAR  110 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~-----------~~~V~lie~~~~~~~~~~~l~~~------~~~~~~--~~~~~  110 (488)
                      ..+||||||+||+||++|..|.+.+.+           ....+.+|+.+.+.++.-.+..+      ++.+.-  ..|..
T Consensus        38 ~i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~Wh~g~~~p~~~~q~~fl~Dlvtl~~P~s  117 (501)
T 4b63_A           38 ELHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFAWHSGMLVPGSKMQISFIKDLATLRDPRS  117 (501)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCCSSGGGCCTTCBCSSCGGGSSSTTTCTTC
T ss_pred             CcCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCCcCCCCCCCCccccccchhhhccccCCCC
Confidence            457999999999999999999986532           22567889887655442111111      000000  00000


Q ss_pred             CCCcc-------------cc-----cCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCC----------cEEEeCCC----
Q 011351          111 LPGFH-------------TC-----VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEK----------QTLITNSG----  158 (488)
Q Consensus       111 ~~~~~-------------~~-----~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~----------~~v~~~~g----  158 (488)
                      .-.|.             ..     ...++..++....++.+..++++++|+++.+..          .+|++.++    
T Consensus       118 ~~sf~~yl~~~~rl~~f~~~~~~~p~r~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~  197 (501)
T 4b63_A          118 SFTFLNYLHQKGRLIHFTNLSTFLPARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGE  197 (501)
T ss_dssp             TTSHHHHHHHHTCHHHHHTTCCSCCBHHHHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCC
T ss_pred             ccchHHHHHHhCCccCCccccCCCCCHHHHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCce
Confidence            00000             00     000001111112234466688899999986532          35666543    


Q ss_pred             -cEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHH-HHHHHhhhcCCeEEEECCCHHHHHHHHHHHhC--CCcEE
Q 011351          159 -KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA-DALISSLEKAKKVVVVGGGYIGMEVAAAAVGW--KLDTT  234 (488)
Q Consensus       159 -~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~-~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~--g~~v~  234 (488)
                       +++.++.||+|||..|. +|...+. .+.+.+.....+. +.+......+|+|+|||+|.+|+|++..|.+.  +.+|+
T Consensus       198 ~~~~~ar~vVlatG~~P~-iP~~~~~-~g~v~Hss~y~~~~~~~~~~~~~gKrV~VVG~G~SA~ei~~~L~~~~~~~~v~  275 (501)
T 4b63_A          198 ISARRTRKVVIAIGGTAK-MPSGLPQ-DPRIIHSSKYCTTLPALLKDKSKPYNIAVLGSGQSAAEIFHDLQKRYPNSRTT  275 (501)
T ss_dssp             EEEEEEEEEEECCCCEEC-CCTTSCC-CTTEEEGGGHHHHHHHHSCCTTSCCEEEEECCSHHHHHHHHHHHHHSTTCEEE
T ss_pred             EEEEEeCEEEECcCCCCC-CCCCCCC-CcceeeccccccchhhccccccCCcEEEEECCcHHHHHHHHHHHhcCCCceEE
Confidence             35889999999998765 3433322 2344443332222 22222234789999999999999999999864  67899


Q ss_pred             EEecCCcCccc--------ccCHHHHHH-------------------------------HHHH-HHH---------cCcE
Q 011351          235 IIFPENHLLQR--------LFTPSLAQR-------------------------------YEQL-YQQ---------NGVK  265 (488)
Q Consensus       235 lv~~~~~~l~~--------~~~~~~~~~-------------------------------~~~~-l~~---------~GV~  265 (488)
                      ++.|++.+.+.        .+.++..+.                               +.+. +++         ....
T Consensus       276 ~~~R~~~~~p~~~s~~~~~~f~p~~~~~f~~l~~~~r~~~~~~~~~~~~~~v~~~li~~i~~~~y~~~~~~~~~~~~~~~  355 (501)
T 4b63_A          276 LIMRDSAMRPSDDSPFVNEIFNPERVDKFYSQSAAERQRSLLADKATNYSVVRLELIEEIYNDMYLQRVKNPDETQWQHR  355 (501)
T ss_dssp             EECSSSSCCBCCCCTTGGGGGSTTHHHHHHTSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCSCGGGCSSE
T ss_pred             EEeCCCccccccccccchhhcCHHHHHHHHhCCHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhccCCCccccccee
Confidence            99998765432        111111111                               1111 111         1124


Q ss_pred             EEcCCeEEEEEeCCC-CcE-----------EEEEeCCCcEEEcCEEEEeecCccCCh-hh-hhc-CCc-ccCCCEEeCCC
Q 011351          266 FVKGASIKNLEAGSD-GRV-----------AAVKLEDGSTIDADTIVIGIGAKPTVS-PF-ERV-GLN-SSVGGIQVDGQ  329 (488)
Q Consensus       266 v~~~~~v~~i~~~~~-~~v-----------~~v~l~~g~~i~~D~vi~a~G~~p~~~-~~-~~~-gl~-~~~g~i~vd~~  329 (488)
                      +..+..+..+..... +.+           .++.+.+|+++++|.||+|||++++.. ++ ..+ .+. ..+|.+.|+.+
T Consensus       356 l~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~v~~~dg~~~~~D~VI~ATGy~~~~p~~L~~~~~~l~~d~~g~~~v~rd  435 (501)
T 4b63_A          356 ILPERKITRVEHHGPQSRMRIHLKSSKPESEGAANDVKETLEVDALMVATGYNRNAHERLLSKVQHLRPTGQDQWKPHRD  435 (501)
T ss_dssp             EECSEEEEEEECCSSSSCEEEEEEESCC--------CCCEEEESEEEECCCEECCTHHHHTGGGGGGSSTTCCSCCBCTT
T ss_pred             ecCCcceeeeeecCCCCeEEEEeeeeEEeCCeeEeCCCeEEECCEEEECcCCCCCCcchhcchhhhcCcCcCCCeeeCCC
Confidence            555666666553222 221           134567889999999999999998853 22 211 122 23567888876


Q ss_pred             CCC--------CCCCEEEEcee
Q 011351          330 FRT--------RMPGIFAIGDV  343 (488)
Q Consensus       330 ~~t--------~~~~Ifa~GD~  343 (488)
                      ++.        ..++||+-|-+
T Consensus       436 y~~~~~~~~~~~~~~i~~qg~~  457 (501)
T 4b63_A          436 YRVEMDPSKVSSEAGIWLQGCN  457 (501)
T ss_dssp             SBBCCCTTTBCTTCEEEECSCC
T ss_pred             cEEeecCCccCCCceEEecCCC
Confidence            653        23669999943

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=99.71  E-value=5.7e-20  Score=186.94  Aligned_cols=223  Identities=16%  Similarity=0.119  Sum_probs=130.2

Q ss_pred             HHHHCCCeEEeCCcEEEEeCCCcEE---EeC-CCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHH----
Q 011351          129 WYKEKGIEMIYQDPVTSIDIEKQTL---ITN-SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADAL----  200 (488)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~~~v---~~~-~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~----  200 (488)
                      .+++.+++++.++.| ++..++..+   .+. ++.++.+|.+|+|||..+..++...+.  ++ .+...+..+.+.    
T Consensus       128 ~~~~~gv~i~~~~~v-~l~~~~~~v~Gv~v~~~~g~~~a~~VVlAtGg~~~~~~~~~~~--~~-~tGdgi~~a~~aGa~~  203 (472)
T 2e5v_A          128 LAREEGIPIIEDRLV-EIRVKDGKVTGFVTEKRGLVEDVDKLVLATGGYSYLYEYSSTQ--ST-NIGDGMAIAFKAGTIL  203 (472)
T ss_dssp             HHHHTTCCEECCCEE-EEEEETTEEEEEEETTTEEECCCSEEEECCCCCGGGSSSBSSC--TT-CSCHHHHHHHHTTCCE
T ss_pred             HHHhCCCEEEECcEE-EEEEeCCEEEEEEEEeCCCeEEeeeEEECCCCCcccCccccCC--CC-CchHHHHHHHHcCCCE
Confidence            345679999999889 987665543   332 223478999999999987644321110  11 111000001110    


Q ss_pred             --HHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHH--------HHHHHHHHHHHcCcEEEcCC
Q 011351          201 --ISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPS--------LAQRYEQLYQQNGVKFVKGA  270 (488)
Q Consensus       201 --~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~--------~~~~~~~~l~~~GV~v~~~~  270 (488)
                        .+..+.....+++|+|  +++++..+...|..+ +..+.++++++ +++.        +...+.+.+++.|. ++++.
T Consensus       204 ~d~e~~q~~p~~~~~ggg--~~~~ae~~~~~G~~~-v~~~g~rf~~~-~~~~~el~~rd~v~~~i~~~~~~~~~-v~ld~  278 (472)
T 2e5v_A          204 ADMEFVQFHPTVTSLDGE--VFLLTETLRGEGAQI-INENGERFLFN-YDKRGELAPRDILSRAIYIEMLKGHK-VFIDL  278 (472)
T ss_dssp             ECTTCEEEEEEEECGGGC--CEECCTHHHHTTCEE-EETTCCCGGGG-TCTTGGGSCHHHHHHHHHHHHHHTCC-EEEEC
T ss_pred             eCCcceEEEeEEEccCCC--ceeeehhhcCCceEE-ECCCCCCCCcc-CCcccCcCchhHHHHHHHHHHHhCCc-EEEec
Confidence              0001111234555766  888888888888777 77888888865 3433        25566666666653 33221


Q ss_pred             eEEEEEeCCCCcEEEEEeCCCcEEE-cCEEEEeecCccCChhhhhcCC-cccCCCEEeCCCCCCCCCCEEEEceecccCC
Q 011351          271 SIKNLEAGSDGRVAAVKLEDGSTID-ADTIVIGIGAKPTVSPFERVGL-NSSVGGIQVDGQFRTRMPGIFAIGDVAAFPL  348 (488)
Q Consensus       271 ~v~~i~~~~~~~v~~v~l~~g~~i~-~D~vi~a~G~~p~~~~~~~~gl-~~~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~  348 (488)
                      +.  +     ..     +.  +.++ .|.++++.|..|+ ++++-.+. ....|+|.||+++||++|||||+|||+....
T Consensus       279 ~~--~-----~~-----~~--~~~~~~~~~~~~~G~dp~-~~i~v~p~~~~~~GGI~vd~~~~t~ipgLyAaGd~a~~~~  343 (472)
T 2e5v_A          279 SK--I-----ED-----FE--RKFPVVAKYLARHGHNYK-VKIPIFPAAHFVDGGIRVNIRGESNIVNLYAIGEVSDSGL  343 (472)
T ss_dssp             TT--C-----TT-----HH--HHCHHHHHHHHHTTCCTT-SCEECEEEEEEESCEEECCTTCBCSSBTEEECGGGEECSS
T ss_pred             cc--h-----HH-----HH--HHhHHHHHHHHHhCcCcc-cceEeehhhceeCCCeEECCCCccccCCEEecchhccccc
Confidence            10  0     00     00  1233 4677788899998 65443221 1236899999999999999999999998322


Q ss_pred             ccCCcccccccHHHHHHHHHHHHHHHhc
Q 011351          349 KMYDRTARVEHVDHARQSAQHCIKALLS  376 (488)
Q Consensus       349 ~~~~~~~~~~~~~~A~~~g~~~a~~i~~  376 (488)
                      ...++.. ..+...+...|+.+++++.+
T Consensus       344 hg~~rl~-~~sl~~~~v~G~~a~~~~a~  370 (472)
T 2e5v_A          344 HGANRLA-SNSLLEGLVFGINLPRYVDS  370 (472)
T ss_dssp             STTSCCT-THHHHHHHHHHHHGGGTTTS
T ss_pred             CCCCCCC-cccHHHHHHHHHHHHHHHHh
Confidence            1111111 22345677778887777754

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=99.61  E-value=1.2e-14  Score=133.41  Aligned_cols=155  Identities=18%  Similarity=0.239  Sum_probs=112.3

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC-----------------cCcccccC-------HHHHHHHHHHHHHc-
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN-----------------HLLQRLFT-------PSLAQRYEQLYQQN-  262 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~-----------------~~l~~~~~-------~~~~~~~~~~l~~~-  262 (488)
                      ..|+|||+|+.|+++|..|++.|.+|+++++..                 .++.. ++       ..+...+.+.+++. 
T Consensus         4 ~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~~~~~~~~~~~~~~~~~~-~~d~~g~~~~~~~~~l~~~~~~~~   82 (232)
T 2cul_A            4 YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLER-AYDPKDERVWAFHARAKYLLEGLR   82 (232)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHH-HCCTTCCCHHHHHHHHHHHHHTCT
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCcccCccccccchhhHHhh-hccCCCCCHHHHHHHHHHHHHcCC
Confidence            469999999999999999999999999999872                 11111 11       26667788888887 


Q ss_pred             CcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC--------------------Chh---hhhcCCcc
Q 011351          263 GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT--------------------VSP---FERVGLNS  319 (488)
Q Consensus       263 GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~--------------------~~~---~~~~gl~~  319 (488)
                      |++++ +++++++..+ ++.+..+.+.+|+++++|.||+|+|..++                    ..+   +++.++..
T Consensus        83 gv~i~-~~~v~~i~~~-~~~v~~v~~~~g~~i~a~~VV~A~G~~s~~~~~~G~~~~~~g~~g~~~~~~l~~~l~~~g~~~  160 (232)
T 2cul_A           83 PLHLF-QATATGLLLE-GNRVVGVRTWEGPPARGEKVVLAVGSFLGARLFLGGVVEEAGRLSEASYPDLLEDLSRLGFRF  160 (232)
T ss_dssp             TEEEE-ECCEEEEEEE-TTEEEEEEETTSCCEECSEEEECCTTCSSCEEEETTEEESEEETTEECCSHHHHHHHHTTCCE
T ss_pred             CcEEE-EeEEEEEEEe-CCEEEEEEECCCCEEECCEEEECCCCChhhceecCCccCCCCCCcccchhhhCHHHHhCCCeE
Confidence            99999 4689999864 45666788889988999999999999443                    222   33445544


Q ss_pred             cCCC----------------EEeCC-------CCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 011351          320 SVGG----------------IQVDG-------QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  376 (488)
Q Consensus       320 ~~g~----------------i~vd~-------~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~  376 (488)
                      .++.                .....       ...|++|||||+|||+ ...          .+..+..||+.+|.+|+.
T Consensus       161 ~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~t~~p~iya~G~~a-~~g----------~~~~~~~~g~~~a~~i~~  229 (232)
T 2cul_A          161 VEREGEVPETPSTPGYRVRYLAFHPEEWEEKTFRLKRLEGLYAVGLCV-REG----------DYARMSEEGKRLAEHLLH  229 (232)
T ss_dssp             EEEEEEEC-----CCEEEEEEEECGGGEETTTTEETTSBSEEECGGGT-SCC----------CHHHHHHHHHHHHHHHHH
T ss_pred             EccccccCcCCCCCCccCchhhcccCCCCCccccccccccceeeeecc-cCc----------cHHHHHHHHHHHHHHHHh
Confidence            3111                00110       1126899999999999 432          455688999999999874

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.48  E-value=1.3e-15  Score=151.30  Aligned_cols=122  Identities=19%  Similarity=0.166  Sum_probs=73.0

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC-------CCCCCCc------cccCCCCCCCCC------
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY-------ERPALTK------GYLFPLDKKPAR------  110 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~-------~~~~l~~------~~~~~~~~~~~~------  110 (488)
                      +++||+|||||++|+++|..|++.|.   +|+|+|+.+....       .+..+..      .++.........      
T Consensus         3 ~~~dViIIGgG~aGl~aA~~la~~G~---~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~   79 (401)
T 2gqf_A            3 QYSENIIIGAGAAGLFCAAQLAKLGK---SVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYT   79 (401)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhCCC---CEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCC
Confidence            35899999999999999999999987   8999999875310       0111000      011000000000      


Q ss_pred             ---------CCCcccc-----------cCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCC----C--cEEEeCCCcEEEec
Q 011351          111 ---------LPGFHTC-----------VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE----K--QTLITNSGKLLKYG  164 (488)
Q Consensus       111 ---------~~~~~~~-----------~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~----~--~~v~~~~g~~i~yd  164 (488)
                               -.+....           ........+.+.+++.+++++.+++|+++..+    .  ..|.+.++ ++.+|
T Consensus        80 ~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~~g-~i~ad  158 (401)
T 2gqf_A           80 NWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNST-QWQCK  158 (401)
T ss_dssp             HHHHHHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTE-EEEES
T ss_pred             HHHHHHHHHhCCCceEECcCCEEccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEECCC-EEECC
Confidence                     0000000           00000011234446679999999999998754    2  35666666 69999


Q ss_pred             cEEeccCCCCC
Q 011351          165 SLIVATGCTAS  175 (488)
Q Consensus       165 ~lVlAtG~~~~  175 (488)
                      +||+|||..+.
T Consensus       159 ~VVlAtG~~s~  169 (401)
T 2gqf_A          159 NLIVATGGLSM  169 (401)
T ss_dssp             EEEECCCCSSC
T ss_pred             EEEECCCCccC
Confidence            99999998863

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.23  E-value=1.4e-12  Score=131.22  Aligned_cols=95  Identities=16%  Similarity=0.249  Sum_probs=71.9

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeec--------CccCChhhhh--cCC
Q 011351          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG--------AKPTVSPFER--VGL  317 (488)
Q Consensus       248 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G--------~~p~~~~~~~--~gl  317 (488)
                      +..+...++..+++.| ++++++.|++|+.++ +.+ .|.+.+|+++.+|.||+|+|        +.|+.+..+.  .+.
T Consensus       203 ~~g~~~l~~~~~~~~g-~i~~~~~V~~i~~~~-~~v-~v~~~~g~~~~ad~vi~a~~~~~l~~i~~~p~l~~~~~~~~~~  279 (431)
T 3k7m_X          203 SNGSADLVDAMSQEIP-EIRLQTVVTGIDQSG-DVV-NVTVKDGHAFQAHSVIVATPMNTWRRIVFTPALPERRRSVIEE  279 (431)
T ss_dssp             TTCTHHHHHHHHTTCS-CEESSCCEEEEECSS-SSE-EEEETTSCCEEEEEEEECSCGGGGGGSEEESCCCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHhhCC-ceEeCCEEEEEEEcC-CeE-EEEECCCCEEEeCEEEEecCcchHhheeeCCCCCHHHHHHHHh
Confidence            4445566667777778 999999999998653 344 58888998899999999999        8888764332  111


Q ss_pred             cccCCCEEeCCCCCCCCCCEEEEceecc
Q 011351          318 NSSVGGIQVDGQFRTRMPGIFAIGDVAA  345 (488)
Q Consensus       318 ~~~~g~i~vd~~~~t~~~~Ifa~GD~a~  345 (488)
                      ......++|+..++++.+++|+.||+..
T Consensus       280 ~~~~~~~kv~~~~~~~~~~i~~~~d~~~  307 (431)
T 3k7m_X          280 GHGGQGLKILIHVRGAEAGIECVGDGIF  307 (431)
T ss_dssp             CCCCCEEEEEEEEESCCTTEEEEBSSSS
T ss_pred             CCCcceEEEEEEECCCCcCceEcCCCCE
Confidence            1223469999999999999999999843

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.18  E-value=7.9e-11  Score=111.37  Aligned_cols=164  Identities=17%  Similarity=0.188  Sum_probs=110.4

Q ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCcCccc------------------------------------c-cCH
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGW-KLDTTIIFPENHLLQR------------------------------------L-FTP  249 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~-g~~v~lv~~~~~~l~~------------------------------------~-~~~  249 (488)
                      ..|+|||+|++|+.+|..|++. |.+|+++++.+.+...                                    . ...
T Consensus        40 ~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  119 (284)
T 1rp0_A           40 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAA  119 (284)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCHH
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCCCcccCCCEEEecCHH
Confidence            4799999999999999999997 9999999988654210                                    0 113


Q ss_pred             HHHHHHHHHHHH-cCcEEEcCCeEEEEEeCCCCcEEEEEeC---------CC-----cEEEcCEEEEeecCccCChh---
Q 011351          250 SLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLE---------DG-----STIDADTIVIGIGAKPTVSP---  311 (488)
Q Consensus       250 ~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~~~v~~v~l~---------~g-----~~i~~D~vi~a~G~~p~~~~---  311 (488)
                      .+...+.+.+.+ .|++++++++++++..+ ++++.++.+.         +|     .++++|.||+|+|..++...   
T Consensus       120 ~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~-~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~~~~~~~  198 (284)
T 1rp0_A          120 LFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATGV  198 (284)
T ss_dssp             HHHHHHHHHHHTSTTEEEEETEEEEEEEEE-TTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSSTTTTHHH
T ss_pred             HHHHHHHHHHHhcCCCEEEcCcEEEEEEec-CCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchHHHHHHH
Confidence            344455566655 69999999999999854 4555556552         32     57999999999998876431   


Q ss_pred             --hhhcC----CcccCCCEEeCC-------CCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 011351          312 --FERVG----LNSSVGGIQVDG-------QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  376 (488)
Q Consensus       312 --~~~~g----l~~~~g~i~vd~-------~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~  376 (488)
                        +...+    +.. ..++.+|.       +.+++.|++|++||++...   ++.......+..+..+|+.+|.++..
T Consensus       199 ~~~~~~g~~~~v~~-~~g~~~~~~~~~~v~~~~~~~p~i~a~G~~~~~~---~g~~~~gp~~~~~~~sG~~~a~~i~~  272 (284)
T 1rp0_A          199 KRLKSIGMIDHVPG-MKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEI---DGAPRMGPTFGAMMISGQKAGQLALK  272 (284)
T ss_dssp             HHHHHTTSSSCCCC-CEEECHHHHHHHHHHHCEEEETTEEECTHHHHHH---HTCEECCSCCHHHHHHHHHHHHHHHH
T ss_pred             HHhhhccCCCCcCC-cCCchhhhhhHHHhhccccccCCEEEEeeehhhh---cCCCCcChHHHHHHHhHHHHHHHHHH
Confidence              22222    211 22343332       3456779999999987531   11111112456677888988888865

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=99.12  E-value=9.5e-11  Score=122.25  Aligned_cols=36  Identities=25%  Similarity=0.360  Sum_probs=31.8

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      .+||||||||+||++||..|++.|. +.+|+|||+.+
T Consensus         5 ~~DVvIVG~G~AGl~aAl~la~~G~-~~~V~vlEk~~   40 (602)
T 1kf6_A            5 QADLAIVGAGGAGLRAAIAAAQANP-NAKIALISKVY   40 (602)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHCT-TCCEEEEESSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhcCC-CCcEEEEeCCC
Confidence            5799999999999999999999982 23899999975

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.12  E-value=1.3e-10  Score=102.00  Aligned_cols=107  Identities=18%  Similarity=0.202  Sum_probs=73.7

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCccc-ccCCCCCCCCHhHH
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTPEWY  130 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  130 (488)
                      ++|+|||||++|+.+|..|++.|.   +|+|+|+.+........+            ..+++++. ..+........+.+
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~---~v~lie~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~l~~~~   66 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGL---KVLVLDGGRSKVKGVSRV------------PNYPGLLDEPSGEELLRRLEAHA   66 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC---CEEEEECSCCTTTTCSCC------------CCSTTCTTCCCHHHHHHHHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCC---cEEEEeCCCCcccCchhh------------hccCCCcCCCCHHHHHHHHHHHH
Confidence            689999999999999999999987   899999987432110000            01111100 00001112334566


Q ss_pred             HHCCCeEEeCCcEEEEeCCC--cEEEeCCCcEEEeccEEeccCCCCC
Q 011351          131 KEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTAS  175 (488)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~--~~v~~~~g~~i~yd~lVlAtG~~~~  175 (488)
                      ++.+++++.+ +|++++.++  ..+++++| ++.+|.||+|+|..+.
T Consensus        67 ~~~gv~v~~~-~v~~i~~~~~~~~v~~~~g-~i~ad~vI~A~G~~~~  111 (180)
T 2ywl_A           67 RRYGAEVRPG-VVKGVRDMGGVFEVETEEG-VEKAERLLLCTHKDPT  111 (180)
T ss_dssp             HHTTCEEEEC-CCCEEEECSSSEEEECSSC-EEEEEEEEECCTTCCH
T ss_pred             HHcCCEEEeC-EEEEEEEcCCEEEEEECCC-EEEECEEEECCCCCCC
Confidence            7789999998 999998654  36777788 7999999999998863

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=99.07  E-value=1.6e-11  Score=125.37  Aligned_cols=169  Identities=14%  Similarity=-0.048  Sum_probs=98.5

Q ss_pred             ccccccceeeccccC---CCCcccceec-cccccccccccccc------------------cccccCCCCCeEEEEcCch
Q 011351            4 VSNSLSFKHGLSLWC---PQSPSLHRIR-HSSAKNFQRRGFVV------------------AYSSFANENREFVIVGGGN   61 (488)
Q Consensus         4 ~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~------------------~~~~~~~~~~~vvIIGgG~   61 (488)
                      .+||++.+||.+|..   .|...|.+.. .++..+...+++..                  .........++|+|||||+
T Consensus        23 ~~~~~~~~~~rvc~~~~~l~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIVGgG~  102 (497)
T 2bry_A           23 ETFVQAQLCQDVLSSFQGLCRALGVESGGGLSQYHKIKAQLNYWSAKSLWAKLDKRASQPVYQQGQACTNTKCLVVGAGP  102 (497)
T ss_dssp             HHHHHCCSHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHTCCSTTTHHHHHHHHHHHTSGGGGGGTTTTTCEEEEECCSH
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHhCCCCCCCcEeehhhHHHHHHHHHHHhhhhhhhhhccccccCccccCCCCEEEECccH
Confidence            579999999999987   6777777744 22222222111111                  0011134568999999999


Q ss_pred             HHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-CCCcc---ccCCCC----CCCCCCCCcccccCCCCCCCCHhHHHHC
Q 011351           62 AAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-ALTKG---YLFPLD----KKPARLPGFHTCVGSGGERQTPEWYKEK  133 (488)
Q Consensus        62 AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~-~l~~~---~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (488)
                      +|+++|..|++.|.   +|+|||+.+.....+. .+...   .+....    ........+...........+.+.+++.
T Consensus       103 aGl~aA~~La~~G~---~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~  179 (497)
T 2bry_A          103 CGLRAAVELALLGA---RVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQLQLLLLKVALLL  179 (497)
T ss_dssp             HHHHHHHHHHHTTC---EEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCC---eEEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHHHHHHHHHHHHHhC
Confidence            99999999999987   8999999875421100 00000   000000    0000000000000000011223445567


Q ss_pred             CCeEEeCCcEEEEeCC-----CcEEEe--C-CC--cEEEeccEEeccCCCCC
Q 011351          134 GIEMIYQDPVTSIDIE-----KQTLIT--N-SG--KLLKYGSLIVATGCTAS  175 (488)
Q Consensus       134 ~i~~~~~~~v~~id~~-----~~~v~~--~-~g--~~i~yd~lVlAtG~~~~  175 (488)
                      +++++.+++|+++..+     ...|++  . +|  .++.+|+||+|+|..+.
T Consensus       180 gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~  231 (497)
T 2bry_A          180 GVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFV  231 (497)
T ss_dssp             TCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCC
T ss_pred             CCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCcc
Confidence            9999999999999863     236666  3 55  46899999999998764

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=99.04  E-value=1.4e-09  Score=112.06  Aligned_cols=160  Identities=18%  Similarity=0.132  Sum_probs=91.4

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC-CCCCCCCCCCccccCCCC--CCCCCCCC------------c
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA-YAPYERPALTKGYLFPLD--KKPARLPG------------F  114 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~-~~~~~~~~l~~~~~~~~~--~~~~~~~~------------~  114 (488)
                      ..+||+|||||+||++||..|++.|.   +|+|||+.. ......+..+.+......  .....+.+            +
T Consensus        26 ~~yDVIVIGgG~AGl~AAlalAr~G~---kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f  102 (637)
T 2zxi_A           26 DEFDVVVIGGGHAGIEAALAAARMGA---KTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQF  102 (637)
T ss_dssp             GCCSEEEECCSHHHHHHHHHHHHTTC---CEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEE
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCC---CEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhcccce
Confidence            35899999999999999999999987   899999974 221110100100000000  00000000            0


Q ss_pred             cc---ccCC------------CCCCCCHhHHHH-CCCeEEeCCcEEEEeCCCc---EEEeCCCcEEEeccEEeccCCCCC
Q 011351          115 HT---CVGS------------GGERQTPEWYKE-KGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCTAS  175 (488)
Q Consensus       115 ~~---~~~~------------~~~~~~~~~~~~-~~i~~~~~~~v~~id~~~~---~v~~~~g~~i~yd~lVlAtG~~~~  175 (488)
                      ..   ..+.            .+...+.+.+++ .+++++ +++|+++..++.   .|.+.+|..+.+|.||+|||..+.
T Consensus       103 ~~l~~~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~-~~~Vt~L~~e~g~V~GV~t~dG~~i~AdaVVLATG~~s~  181 (637)
T 2zxi_A          103 KMLNTRKGKAVQSPRAQADKKRYREYMKKVCENQENLYIK-QEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTFLN  181 (637)
T ss_dssp             EEESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ESCEEEEEESSSBEEEEEETTSCEEECSEEEECCTTCBT
T ss_pred             eecccccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEE-EeEEEEEEecCCEEEEEEECCCcEEEeCEEEEccCCCcc
Confidence            00   0000            000111233444 489985 579999876544   367788888999999999998765


Q ss_pred             cCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEe
Q 011351          176 RFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIF  237 (488)
Q Consensus       176 ~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~  237 (488)
                      . +..+     |...+.              ..+    .|+.++.+++..|.+.|.++..+.
T Consensus       182 ~-~~~~-----G~~~~~--------------~Gr----~G~~~A~~la~~L~~lG~~v~~l~  219 (637)
T 2zxi_A          182 G-VIYI-----GDKMIP--------------GGR----LGEPRSEGLSDFYRRFDFPLIRFK  219 (637)
T ss_dssp             C-EEEE-----TTEEEE--------------CSB----TTBCCBCTHHHHHHHTTCCCEEEE
T ss_pred             C-ceec-----cceecC--------------CCC----CCchhHHHHHHHHHhcCCceEEec
Confidence            2 2222     222211              122    235567888999998887765543

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=98.98  E-value=1.2e-09  Score=112.54  Aligned_cols=35  Identities=20%  Similarity=0.315  Sum_probs=31.8

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      ..+||||||||+||++||.+|++ |.   +|+||||.+.
T Consensus         7 ~~~DVvVVG~G~AGl~aAl~la~-G~---~V~vlEk~~~   41 (540)
T 1chu_A            7 HSCDVLIIGSGAAGLSLALRLAD-QH---QVIVLSKGPV   41 (540)
T ss_dssp             EECSEEEECCSHHHHHHHHHHTT-TS---CEEEECSSCT
T ss_pred             CCCCEEEECccHHHHHHHHHHhc-CC---cEEEEECCCC
Confidence            35799999999999999999999 87   8999999864

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=98.98  E-value=2.8e-09  Score=104.43  Aligned_cols=68  Identities=13%  Similarity=0.269  Sum_probs=53.8

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCC--cEEEcCEEEEeecCccCChhhhhc-CC
Q 011351          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSPFERV-GL  317 (488)
Q Consensus       248 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g--~~i~~D~vi~a~G~~p~~~~~~~~-gl  317 (488)
                      +..+...+.+.+++.|++++++++|++++.++++.+ .|.+.+|  .++.+|.||+|+|.... .+++.+ |+
T Consensus       149 ~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~-~v~~~~g~~~~~~a~~VV~A~G~~s~-~l~~~~~g~  219 (369)
T 3dme_A          149 SHALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGF-ELDFGGAEPMTLSCRVLINAAGLHAP-GLARRIEGI  219 (369)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSSE-EEEECTTSCEEEEEEEEEECCGGGHH-HHHHTEETS
T ss_pred             HHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCceE-EEEECCCceeEEEeCEEEECCCcchH-HHHHHhcCC
Confidence            346778888889999999999999999997644434 5788888  47999999999998753 566665 54

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=98.96  E-value=9.3e-10  Score=112.81  Aligned_cols=57  Identities=25%  Similarity=0.365  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCc
Q 011351          249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  306 (488)
Q Consensus       249 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~  306 (488)
                      ..+.+.+.+.+++.|++|++++.|++|..+ ++++++|+++||+++.||.||++++..
T Consensus       221 ~~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~-~~~~~gV~~~~g~~~~ad~VV~~a~~~  277 (501)
T 4dgk_A          221 GALVQGMIKLFQDLGGEVVLNARVSHMETT-GNKIEAVHLEDGRRFLTQAVASNADVV  277 (501)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETTSCEEECSCEEECCC--
T ss_pred             cchHHHHHHHHHHhCCceeeecceeEEEee-CCeEEEEEecCCcEEEcCEEEECCCHH
Confidence            467788888999999999999999999864 678889999999999999999987654

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=98.92  E-value=8.6e-10  Score=109.79  Aligned_cols=124  Identities=20%  Similarity=0.280  Sum_probs=72.7

Q ss_pred             cCCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC-------CCCCC------ccccCCCCCCC-----
Q 011351           47 FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE-------RPALT------KGYLFPLDKKP-----  108 (488)
Q Consensus        47 ~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~-------~~~l~------~~~~~~~~~~~-----  108 (488)
                      |+++++||+|||||+||++||..|++.|.   +|+|+|+.+.....       +..+.      ..++.......     
T Consensus        23 M~~~~~dViIIGgG~AGl~aA~~La~~G~---~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~   99 (417)
T 3v76_A           23 MVAEKQDVVIIGAGAAGMMCAIEAGKRGR---RVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALA   99 (417)
T ss_dssp             -----CCEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHH
T ss_pred             ccCCCCCEEEECcCHHHHHHHHHHHHCCC---cEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHH
Confidence            45567899999999999999999999987   89999998753210       00000      00000000000     


Q ss_pred             -------------------CCCCCcccc--cCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEecc
Q 011351          109 -------------------ARLPGFHTC--VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGS  165 (488)
Q Consensus       109 -------------------~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~  165 (488)
                                         ....+....  ........+.+.+++.+++++.+++|+++..++.  .|.+.+| ++.+|+
T Consensus       100 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~  178 (417)
T 3v76_A          100 RYRPQDFVALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTSAG-TVDAAS  178 (417)
T ss_dssp             HSCHHHHHHHHHHTTCCEEECSTTEEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTE-EEEESE
T ss_pred             hcCHHHHHHHHHHcCCCcEEeeCCEEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCc-EEEeeE
Confidence                               000000000  0000011123345567999999999999976544  5667777 799999


Q ss_pred             EEeccCCCC
Q 011351          166 LIVATGCTA  174 (488)
Q Consensus       166 lVlAtG~~~  174 (488)
                      ||+|||..+
T Consensus       179 VIlAtG~~S  187 (417)
T 3v76_A          179 LVVASGGKS  187 (417)
T ss_dssp             EEECCCCSS
T ss_pred             EEECCCCcc
Confidence            999999875

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.91  E-value=2e-12  Score=135.36  Aligned_cols=67  Identities=12%  Similarity=0.223  Sum_probs=50.4

Q ss_pred             HHcCcEEEcCCeEEEEEeCCC-CcEEEEEeC---CCc--EEEcCEEEEeecCccCChhhhhcCCcc----cCCCEEe
Q 011351          260 QQNGVKFVKGASIKNLEAGSD-GRVAAVKLE---DGS--TIDADTIVIGIGAKPTVSPFERVGLNS----SVGGIQV  326 (488)
Q Consensus       260 ~~~GV~v~~~~~v~~i~~~~~-~~v~~v~l~---~g~--~i~~D~vi~a~G~~p~~~~~~~~gl~~----~~g~i~v  326 (488)
                      ++.||++++++.|+++..+++ +++.+|.+.   +|+  ++.+|.||+|+|..++..+|..+|+-.    ...+|.+
T Consensus       271 ~~~nv~v~~~~~V~~i~~~~~~~~v~GV~~~~~~~g~~~~i~A~~VIlaaG~~~s~~lL~~sgiG~~~~l~~~~i~~  347 (623)
T 3pl8_A          271 PEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQLGRPNPANPPE  347 (623)
T ss_dssp             EEEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEECEEEEEECSCTTHHHHHHHTTTSSCCSSCCTTSCCS
T ss_pred             cCCCEEEEeCCEEEEEEEECCCCEEEEEEEEEcCCCcEEEEECCEEEEcCCCcCCHHHHHhcCCCccccccccCCCC
Confidence            345899999999999986533 467777775   354  688999999999999988888776632    2345555

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=98.90  E-value=6.3e-10  Score=113.65  Aligned_cols=147  Identities=15%  Similarity=0.119  Sum_probs=101.9

Q ss_pred             EeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHH---------HHh--hhcCCeEEEECCCHHHHHHHHHHHhCC
Q 011351          162 KYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADAL---------ISS--LEKAKKVVVVGGGYIGMEVAAAAVGWK  230 (488)
Q Consensus       162 ~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~---------~~~--~~~~~~vvVvG~G~~g~e~A~~l~~~g  230 (488)
                      .||++++++|..+.. +++++...+++.......+..++         ...  .....+|+|||+|+.|+.+|..|++.|
T Consensus        37 ~~~~l~~~~g~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIVGgG~aGl~aA~~La~~G  115 (497)
T 2bry_A           37 SFQGLCRALGVESGG-GLSQYHKIKAQLNYWSAKSLWAKLDKRASQPVYQQGQACTNTKCLVVGAGPCGLRAAVELALLG  115 (497)
T ss_dssp             HHHHHHHHHTCCTTC-HHHHHHHHHHTCCSTTTHHHHHHHHHHHTSGGGGGGTTTTTCEEEEECCSHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCCCCCC-CcEeehhhHHHHHHHHHHHhhhhhhhhhccccccCccccCCCCEEEECccHHHHHHHHHHHHCC
Confidence            478899999998653 33333223333344444444333         111  123568999999999999999999999


Q ss_pred             CcEEEEecCCcCccc----cc----------------------------CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeC
Q 011351          231 LDTTIIFPENHLLQR----LF----------------------------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAG  278 (488)
Q Consensus       231 ~~v~lv~~~~~~l~~----~~----------------------------~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~  278 (488)
                      .+|+++++.+.+...    ..                            ...+.+.+.+.+++.||++++++++++++.+
T Consensus       116 ~~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~  195 (497)
T 2bry_A          116 ARVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQLQLLLLKVALLLGVEIHWGVKFTGLQPP  195 (497)
T ss_dssp             CEEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEECC
T ss_pred             CeEEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEe
Confidence            999999988654210    00                            0456667778888899999999999999863


Q ss_pred             C-CCcEEEEEe--C-CC--cEEEcCEEEEeecCccCC
Q 011351          279 S-DGRVAAVKL--E-DG--STIDADTIVIGIGAKPTV  309 (488)
Q Consensus       279 ~-~~~v~~v~l--~-~g--~~i~~D~vi~a~G~~p~~  309 (488)
                      + ++....|.+  . +|  +++.+|.||.|+|..+..
T Consensus       196 ~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~~  232 (497)
T 2bry_A          196 PRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFVP  232 (497)
T ss_dssp             CSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCCC
T ss_pred             cCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCccc
Confidence            2 222234555  4 66  479999999999998765

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=98.89  E-value=2.4e-09  Score=97.90  Aligned_cols=117  Identities=15%  Similarity=0.166  Sum_probs=71.1

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCC-CCcccccCC---CCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARL-PGFHTCVGS---GGERQ  125 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~  125 (488)
                      +++||+|||||++|+++|..|++.|.   +|+|||+...... .+ ... ..... . ...+ ..+....+.   .+...
T Consensus         2 ~~~dVvVVGgG~aGl~aA~~la~~g~---~v~lie~~~~~~G-~~-~~~-~~~~~-~-~~~~~~~~~d~~g~~~~~~~~~   73 (232)
T 2cul_A            2 AAYQVLIVGAGFSGAETAFWLAQKGV---RVGLLTQSLDAVM-MP-FLP-PKPPF-P-PGSLLERAYDPKDERVWAFHAR   73 (232)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTC---CEEEEESCGGGTT-CC-SSC-CCSCC-C-TTCHHHHHCCTTCCCHHHHHHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCC---CEEEEecCCCcCC-cc-cCc-ccccc-c-hhhHHhhhccCCCCCHHHHHHH
Confidence            46899999999999999999999987   8999999732111 00 000 00000 0 0000 000000000   00011


Q ss_pred             CHhHHHHC-CCeEEeCCcEEEEeCCCc---EEEeCCCcEEEeccEEeccCCCCC
Q 011351          126 TPEWYKEK-GIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCTAS  175 (488)
Q Consensus       126 ~~~~~~~~-~i~~~~~~~v~~id~~~~---~v~~~~g~~i~yd~lVlAtG~~~~  175 (488)
                      +.+.+++. +++++. ++|+++..++.   .+.+.+|+++.+|+||+|||....
T Consensus        74 l~~~~~~~~gv~i~~-~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~  126 (232)
T 2cul_A           74 AKYLLEGLRPLHLFQ-ATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLG  126 (232)
T ss_dssp             HHHHHHTCTTEEEEE-CCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSS
T ss_pred             HHHHHHcCCCcEEEE-eEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChh
Confidence            23445555 899885 69999986543   366778888999999999998643

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=98.88  E-value=3.9e-09  Score=109.05  Aligned_cols=160  Identities=14%  Similarity=0.151  Sum_probs=89.9

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC-CCCCCCCCCccccCCCC--CCCCCCCC------------c
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY-APYERPALTKGYLFPLD--KKPARLPG------------F  114 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~-~~~~~~~l~~~~~~~~~--~~~~~~~~------------~  114 (488)
                      ..+||+|||||+||++||..|++.|.   +|+|||+++. .....+..+.+......  .....+.+            +
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaLAr~G~---kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f  103 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAAARMGQ---QTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQF  103 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEE
T ss_pred             CcCCEEEECChHHHHHHHHHHHhCCC---CEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccch
Confidence            46899999999999999999999987   8999998742 21111110110000000  00000000            0


Q ss_pred             ccc---cCC------------CCCCCCHhHHHH-CCCeEEeCCcEEEEeCCCc---EEEeCCCcEEEeccEEeccCCCCC
Q 011351          115 HTC---VGS------------GGERQTPEWYKE-KGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCTAS  175 (488)
Q Consensus       115 ~~~---~~~------------~~~~~~~~~~~~-~~i~~~~~~~v~~id~~~~---~v~~~~g~~i~yd~lVlAtG~~~~  175 (488)
                      ...   .+.            .+...+.+.+++ .|++++ +++|+.+..++.   .|.+.+|..+.+|.||+|||+.+.
T Consensus       104 ~~l~~~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~-~~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVLATGt~s~  182 (651)
T 3ces_A          104 RILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIF-QQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLD  182 (651)
T ss_dssp             EEESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEESSSBEEEEEETTSEEEEEEEEEECCSTTTC
T ss_pred             hhhhcccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEE-EEEEEEEEecCCEEEEEEECCCCEEECCEEEEcCCCCcc
Confidence            000   000            000111233445 589985 579999976543   467778888999999999998765


Q ss_pred             cCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEe
Q 011351          176 RFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIF  237 (488)
Q Consensus       176 ~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~  237 (488)
                      . +.     .+|...+              .+.+   +| +.++++++..|.+.|.+|+.+.
T Consensus       183 ~-~~-----i~G~~~~--------------~~gr---iG-g~~a~eLA~~L~~lG~~v~~~~  220 (651)
T 3ces_A          183 G-KI-----HIGLDNY--------------SGGR---AG-DPPSIPLSRRLRELPLRVGRLK  220 (651)
T ss_dssp             C-EE-----ECC-------------------------------CCHHHHHHHTTTCCEEEEC
T ss_pred             C-cc-----ccCcccC--------------CCCC---cc-chhhhHHHHHHHhcCCeEEEec
Confidence            2 22     2222111              0222   46 7889999999999999988774

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.84  E-value=4.7e-09  Score=103.49  Aligned_cols=121  Identities=16%  Similarity=0.159  Sum_probs=75.7

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCC---------------CccccCCCCCCCCCCC--
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPAL---------------TKGYLFPLDKKPARLP--  112 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l---------------~~~~~~~~~~~~~~~~--  112 (488)
                      ++++|+|||||++|+++|..|++.|.   +|+|+|+.+.........               ...+.. .......+.  
T Consensus        10 ~~~dVvIVGaG~aGl~~A~~L~~~G~---~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~-~~~~~~~~~~~   85 (379)
T 3alj_A           10 KTRRAEVAGGGFAGLTAAIALKQNGW---DVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQ-GSHTPPTYETW   85 (379)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHT-TCBCCSCEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC---CEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHh-hCCCccceEEE
Confidence            45899999999999999999999987   899999986542110000               000000 000000000  


Q ss_pred             --Ccc--ccc--CC--------CCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCC
Q 011351          113 --GFH--TCV--GS--------GGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS  175 (488)
Q Consensus       113 --~~~--~~~--~~--------~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~  175 (488)
                        +..  ...  +.        .....+.+.+.+.|++++.+++|++++.+. .|++.+|+++.+|.||.|+|....
T Consensus        86 ~~g~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~-~v~~~~g~~~~ad~vV~AdG~~s~  161 (379)
T 3alj_A           86 MHNKSVSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADPVG-RLTLQTGEVLEADLIVGADGVGSK  161 (379)
T ss_dssp             ETTEEEEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEETTT-EEEETTSCEEECSEEEECCCTTCH
T ss_pred             eCCceeeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEeCC-EEEECCCCEEEcCEEEECCCccHH
Confidence              000  000  00        000112334456799999999999998755 888889989999999999998653

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=98.83  E-value=7.6e-09  Score=105.98  Aligned_cols=124  Identities=18%  Similarity=0.219  Sum_probs=75.9

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--------------CCC---CCCC-cc-ccCCCCCCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--------------YER---PALT-KG-YLFPLDKKPA  109 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~--------------~~~---~~l~-~~-~~~~~~~~~~  109 (488)
                      ...+||+|||||++|++||..|++.|+   +|+|||+.+...              ...   .... .+ ..+.......
T Consensus       105 ~~~~DVVIVGgGpaGL~aA~~La~~G~---kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~  181 (549)
T 3nlc_A          105 NLTERPIVIGFGPCGLFAGLVLAQMGF---NPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYS  181 (549)
T ss_dssp             TCCCCCEEECCSHHHHHHHHHHHHTTC---CCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCC---eEEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEE
Confidence            345899999999999999999999987   899999985320              000   0000 00 0000000000


Q ss_pred             CCCC--c--------------c-c--ccC---------CCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCc---EEEeCCC
Q 011351          110 RLPG--F--------------H-T--CVG---------SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ---TLITNSG  158 (488)
Q Consensus       110 ~~~~--~--------------~-~--~~~---------~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~---~v~~~~g  158 (488)
                      .+..  .              . .  ...         ......+.+.+++.|++++++++|+++..++.   .|++.+|
T Consensus       182 ~i~~~~~~~~~v~~~~~~~G~~~~i~~~~~p~~G~~~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~~G  261 (549)
T 3nlc_A          182 QVKDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNG  261 (549)
T ss_dssp             CSCCTTCHHHHHHHHHHHTTCCGGGGTBSSCCCCHHHHHHHHHHHHHHHHHTTCEEESSCCEEEEEESSSBEEEEEETTS
T ss_pred             EeccccccHHHHHHHHHHcCCCceEeeccccccccchHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEECCC
Confidence            0000  0              0 0  000         00001122344567999999999999987653   4778889


Q ss_pred             cEEEeccEEeccCCCCC
Q 011351          159 KLLKYGSLIVATGCTAS  175 (488)
Q Consensus       159 ~~i~yd~lVlAtG~~~~  175 (488)
                      +++.+|.||+|+|..+.
T Consensus       262 ~~i~Ad~VVlA~G~~s~  278 (549)
T 3nlc_A          262 EEIKSRHVVLAVGHSAR  278 (549)
T ss_dssp             CEEECSCEEECCCTTCH
T ss_pred             CEEECCEEEECCCCChh
Confidence            89999999999998763

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=98.81  E-value=4.2e-08  Score=97.99  Aligned_cols=67  Identities=15%  Similarity=0.188  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCc--EEEcCEEEEeecCccCChhhhhcCCc
Q 011351          250 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVSPFERVGLN  318 (488)
Q Consensus       250 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~--~i~~D~vi~a~G~~p~~~~~~~~gl~  318 (488)
                      .+...+.+.+++.|++++.+++|++++..+++....+.+.+|+  ++.+|.||.|+|...  .+.+.+++.
T Consensus       107 ~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~A~G~~s--~l~~~~g~~  175 (421)
T 3nix_A          107 NFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGYGR--VIPRMFGLD  175 (421)
T ss_dssp             HHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEECCGGGC--HHHHHTTCE
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEECCCCch--hhHHhcCCC
Confidence            4556677777788999999999999987655555567778888  799999999999876  333444443

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=98.80  E-value=1.3e-07  Score=100.45  Aligned_cols=65  Identities=14%  Similarity=0.142  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCc-EEEcCEEEEeecCccCChhhhhcC
Q 011351          249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIGAKPTVSPFERVG  316 (488)
Q Consensus       249 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~-~i~~D~vi~a~G~~p~~~~~~~~g  316 (488)
                      ..+...+.+.+++.|++++++++|+++..++++ + .|.+.+|+ ++.+|.||+|+|.... .++...+
T Consensus       412 ~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~-v-~V~t~~G~~~i~Ad~VVlAtG~~s~-~l~~~~~  477 (689)
T 3pvc_A          412 SDLTHALMMLAQQNGMTCHYQHELQRLKRIDSQ-W-QLTFGQSQAAKHHATVILATGHRLP-EWEQTHH  477 (689)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEECSSS-E-EEEEC-CCCCEEESEEEECCGGGTT-CSTTTTT
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCeEeEEEEeCCe-E-EEEeCCCcEEEECCEEEECCCcchh-ccccccC
Confidence            467778888888999999999999999875443 3 67888887 7999999999998743 3433333

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=98.79  E-value=2.3e-08  Score=103.47  Aligned_cols=59  Identities=20%  Similarity=0.377  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHHc-CcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351          249 PSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  308 (488)
Q Consensus       249 ~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~  308 (488)
                      ..+.+.+.+.+++. |++++.+ +|+++...+++.+..|.+.+|+++.+|.||.|+|....
T Consensus       194 ~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S~  253 (550)
T 2e4g_A          194 HLVADFLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGL  253 (550)
T ss_dssp             HHHHHHHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGCC
T ss_pred             HHHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCchh
Confidence            35777888888888 9999999 99999876566777888999988999999999998764

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=98.77  E-value=7.4e-09  Score=104.40  Aligned_cols=123  Identities=20%  Similarity=0.302  Sum_probs=74.2

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC-------CCCCCCc-----ccc--CCCCCC-CC----
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY-------ERPALTK-----GYL--FPLDKK-PA----  109 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~-------~~~~l~~-----~~~--~~~~~~-~~----  109 (488)
                      .+++||+|||||+||+++|..|++.|.   +|+|||+.+...-       .+..+..     .++  ...... ..    
T Consensus        24 ~~~~dVvIIGgG~aGl~aA~~la~~G~---~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (447)
T 2i0z_A           24 AMHYDVIVIGGGPSGLMAAIGAAEEGA---NVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFS  100 (447)
T ss_dssp             -CCCSEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHH
T ss_pred             cCCCCEEEECCcHHHHHHHHHHHHCCC---CEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHH
Confidence            345899999999999999999999987   8999999864310       0000000     000  000000 00    


Q ss_pred             CC-----------CCccc---ccC---------CCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCc---EEEeCCCcEEEe
Q 011351          110 RL-----------PGFHT---CVG---------SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKY  163 (488)
Q Consensus       110 ~~-----------~~~~~---~~~---------~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~---~v~~~~g~~i~y  163 (488)
                      .+           .+...   ..+         ......+.+.+++.+++++.+++|+++..++.   .|++.+|+++.+
T Consensus       101 ~~~~~~~~~~~~~~G~~~~~~~~g~~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~~G~~i~A  180 (447)
T 2i0z_A          101 IFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLET  180 (447)
T ss_dssp             HSCHHHHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEEC
T ss_pred             hcCHHHHHHHHHhcCCceEEeeCCEEECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEECCCCEEEC
Confidence            00           00000   000         00001123344567999999999999975443   477788877999


Q ss_pred             ccEEeccCCCC
Q 011351          164 GSLIVATGCTA  174 (488)
Q Consensus       164 d~lVlAtG~~~  174 (488)
                      |.||+|||...
T Consensus       181 d~VVlAtGg~s  191 (447)
T 2i0z_A          181 NHVVIAVGGKS  191 (447)
T ss_dssp             SCEEECCCCSS
T ss_pred             CEEEECCCCCc
Confidence            99999999876

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=98.77  E-value=1.9e-07  Score=92.64  Aligned_cols=65  Identities=18%  Similarity=0.301  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcC
Q 011351          249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG  316 (488)
Q Consensus       249 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~g  316 (488)
                      ..+...+.+.+++.|++++.+++|+++..+ ++.+..|.+.+| ++.+|.||+|+|.... .+.+.++
T Consensus       174 ~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~-~~~~~~v~~~~g-~~~a~~vV~a~G~~s~-~l~~~~g  238 (405)
T 2gag_B          174 DHVAWAFARKANEMGVDIIQNCEVTGFIKD-GEKVTGVKTTRG-TIHAGKVALAGAGHSS-VLAEMAG  238 (405)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEES-SSBEEEEEETTC-CEEEEEEEECCGGGHH-HHHHHHT
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCeEEEEEEe-CCEEEEEEeCCc-eEECCEEEECCchhHH-HHHHHcC
Confidence            367777888889999999999999999865 456667888888 6999999999998753 3444443

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=98.77  E-value=8.7e-09  Score=106.07  Aligned_cols=53  Identities=13%  Similarity=0.139  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCc
Q 011351          252 AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  306 (488)
Q Consensus       252 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~  306 (488)
                      ........++.|+++++++.|++|+.. ++.+ .|.+.+|+++.+|.||++++..
T Consensus       215 ~~l~~~l~~~lg~~i~~~~~V~~i~~~-~~~v-~v~~~~g~~~~ad~VI~a~p~~  267 (520)
T 1s3e_A          215 GQVSERIMDLLGDRVKLERPVIYIDQT-RENV-LVETLNHEMYEAKYVISAIPPT  267 (520)
T ss_dssp             HHHHHHHHHHHGGGEESSCCEEEEECS-SSSE-EEEETTSCEEEESEEEECSCGG
T ss_pred             HHHHHHHHHHcCCcEEcCCeeEEEEEC-CCeE-EEEECCCeEEEeCEEEECCCHH
Confidence            334444445558999999999999865 4445 4888899999999999998864

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=98.77  E-value=1.3e-07  Score=98.30  Aligned_cols=61  Identities=20%  Similarity=0.250  Sum_probs=47.8

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC--CCc--EEEcCEEEEeecCccC
Q 011351          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--DGS--TIDADTIVIGIGAKPT  308 (488)
Q Consensus       248 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~--~g~--~i~~D~vi~a~G~~p~  308 (488)
                      ...+...+.+.+++.||++++++.++++..++++++.+|.+.  +|+  ++.+|.||+|+|..+.
T Consensus       254 g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~~  318 (572)
T 1d4d_A          254 GAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAK  318 (572)
T ss_dssp             HHHHHHHHHHHHHHTTCEEESSEEEEEEEEC--CCEEEEEEEETTTEEEEEECSEEEECCCCCTT
T ss_pred             HHHHHHHHHHHHHHcCCeEEecCEEEEEEECCCCeEEEEEEEeCCCcEEEEEcCEEEEeCCCCcc
Confidence            346777888888999999999999999976533777777665  664  6899999999997653

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=98.75  E-value=1.9e-07  Score=99.05  Aligned_cols=58  Identities=14%  Similarity=0.218  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351          249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  308 (488)
Q Consensus       249 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~  308 (488)
                      ..+...+.+.+++.|++++++++|+++..++ +.+ .|.+.+|.++.+|.||+|+|....
T Consensus       417 ~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~-~~v-~V~t~~G~~i~Ad~VVlAtG~~s~  474 (676)
T 3ps9_A          417 AELTRNVLELAQQQGLQIYYQYQLQNFSRKD-DCW-LLNFAGDQQATHSVVVLANGHQIS  474 (676)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEEET-TEE-EEEETTSCEEEESEEEECCGGGGG
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCeeeEEEEeC-CeE-EEEECCCCEEECCEEEECCCcchh
Confidence            4677788888889999999999999998653 344 688888888999999999998743

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=98.74  E-value=2.2e-08  Score=101.02  Aligned_cols=66  Identities=23%  Similarity=0.393  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCCeEEEEEeC--------------CCCcEEEEEeCCCcEE--EcCEEEEeecCccCChhh
Q 011351          249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAG--------------SDGRVAAVKLEDGSTI--DADTIVIGIGAKPTVSPF  312 (488)
Q Consensus       249 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~--------------~~~~v~~v~l~~g~~i--~~D~vi~a~G~~p~~~~~  312 (488)
                      ..+...+.+.+++.|++++.+++|+++..+              +++.+..|.+.+| ++  .+|.||+|+|.... .++
T Consensus       181 ~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-~i~~~Ad~VV~AtG~~s~-~l~  258 (448)
T 3axb_A          181 EKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-TRVEVGEKLVVAAGVWSN-RLL  258 (448)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-CEEEEEEEEEECCGGGHH-HHH
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-EEeecCCEEEECCCcCHH-HHH
Confidence            377788888899999999999999999861              2455657888888 58  99999999998643 455


Q ss_pred             hhcC
Q 011351          313 ERVG  316 (488)
Q Consensus       313 ~~~g  316 (488)
                      +.++
T Consensus       259 ~~~g  262 (448)
T 3axb_A          259 NPLG  262 (448)
T ss_dssp             GGGT
T ss_pred             HHcC
Confidence            5443

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=98.72  E-value=5.2e-08  Score=96.62  Aligned_cols=124  Identities=12%  Similarity=0.075  Sum_probs=73.6

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-C--CCcc---cc--CCC--CCCCCCCCCc--cc
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-A--LTKG---YL--FPL--DKKPARLPGF--HT  116 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~-~--l~~~---~~--~~~--~~~~~~~~~~--~~  116 (488)
                      +++++|+|||||++|+++|..|++.|+   +|+|+|+.+.....+. .  +...   .+  ...  ..........  ..
T Consensus         3 ~~~~~V~IVGaG~aGl~~A~~L~~~G~---~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~   79 (397)
T 2vou_A            3 PTTDRIAVVGGSISGLTAALMLRDAGV---DVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVD   79 (397)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEE
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCC---CEEEEecCCCCCCccccccccChhHHHHHHHcCCccccccccccceEEEe
Confidence            456899999999999999999999987   8999999865311100 0  0000   00  000  0000000000  00


Q ss_pred             c-cCCC-------CC----CCCHhHHHH--CCCeEEeCCcEEEEeCCC--cEEEeCCCcEEEeccEEeccCCCCC
Q 011351          117 C-VGSG-------GE----RQTPEWYKE--KGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTAS  175 (488)
Q Consensus       117 ~-~~~~-------~~----~~~~~~~~~--~~i~~~~~~~v~~id~~~--~~v~~~~g~~i~yd~lVlAtG~~~~  175 (488)
                      . .+..       ..    ..+.+.+.+  .+++++.+++|+++..+.  .++++.+|+++.+|.||.|+|....
T Consensus        80 ~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  154 (397)
T 2vou_A           80 ALTGERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGASV  154 (397)
T ss_dssp             TTTCCEEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTCH
T ss_pred             cCCCCccccccCcccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCEEEEEECCCCEEECCEEEECCCcchh
Confidence            0 0000       00    001122222  378999999999997654  3677888988999999999998653

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=98.71  E-value=2.4e-07  Score=93.06  Aligned_cols=58  Identities=24%  Similarity=0.278  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCC---eEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCcc
Q 011351          249 PSLAQRYEQLYQQNGVKFVKGA---SIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  307 (488)
Q Consensus       249 ~~~~~~~~~~l~~~GV~v~~~~---~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p  307 (488)
                      ..+...+.+.+++.|+++++++   +|+++... ++.+.+|.+.+|+++.+|.||+|+|...
T Consensus       161 ~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~-~~~v~gV~t~~G~~i~Ad~VV~AtG~~s  221 (438)
T 3dje_A          161 RNALVAAAREAQRMGVKFVTGTPQGRVVTLIFE-NNDVKGAVTADGKIWRAERTFLCAGASA  221 (438)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEE-TTEEEEEEETTTEEEECSEEEECCGGGG
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCcCceEEEEEec-CCeEEEEEECCCCEEECCEEEECCCCCh
Confidence            4677788888899999999999   99999864 5677779999998899999999999764

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.70  E-value=1.3e-08  Score=101.10  Aligned_cols=123  Identities=16%  Similarity=0.204  Sum_probs=72.6

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCC--Cc---------cc---cCCCCCCCC-----C
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPAL--TK---------GY---LFPLDKKPA-----R  110 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l--~~---------~~---~~~~~~~~~-----~  110 (488)
                      +++||+|||||++|+++|..|++.|.   +|+|+|+.+.........  ..         +.   +........     .
T Consensus         5 ~~~dVvIVGaG~aGl~~A~~L~~~G~---~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~   81 (399)
T 2x3n_A            5 NHIDVLINGCGIGGAMLAYLLGRQGH---RVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVY   81 (399)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEE
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCC---cEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEe
Confidence            35799999999999999999999987   899999986531110000  00         00   000000000     0


Q ss_pred             CCC--cccccCCC-------C-------CCCCHhHHHHC-CCeEEeCCcEEEEeCCCc----EEEeCCCcEEEeccEEec
Q 011351          111 LPG--FHTCVGSG-------G-------ERQTPEWYKEK-GIEMIYQDPVTSIDIEKQ----TLITNSGKLLKYGSLIVA  169 (488)
Q Consensus       111 ~~~--~~~~~~~~-------~-------~~~~~~~~~~~-~i~~~~~~~v~~id~~~~----~v~~~~g~~i~yd~lVlA  169 (488)
                      ..+  ........       .       ...+.+.+++. +++++.+++|++++.++.    .+++.+|+++.+|.||.|
T Consensus        82 ~~g~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~vV~A  161 (399)
T 2x3n_A           82 HDGELLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGA  161 (399)
T ss_dssp             ETTEEEEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEEC
T ss_pred             CCCCEEEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEEECCEEEEC
Confidence            000  00000000       0       00011222334 899999999999986543    677888888999999999


Q ss_pred             cCCCCC
Q 011351          170 TGCTAS  175 (488)
Q Consensus       170 tG~~~~  175 (488)
                      +|....
T Consensus       162 dG~~s~  167 (399)
T 2x3n_A          162 DGIASY  167 (399)
T ss_dssp             CCTTCH
T ss_pred             CCCChH
Confidence            998653

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=98.70  E-value=2.7e-08  Score=103.31  Aligned_cols=123  Identities=21%  Similarity=0.302  Sum_probs=73.1

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-CCC-------------------------c-ccc
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-ALT-------------------------K-GYL  101 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~-~l~-------------------------~-~~~  101 (488)
                      |+.+||+|||||+||+++|..|++.|.   +|+|||+.+....... .+.                         . .+.
T Consensus        21 M~~~DVvIVGgG~AGl~aA~~Lar~G~---~V~LiEr~~~~~~~~G~~l~p~~~~~l~~lGl~~~l~~~~~~~~~~~~~~   97 (591)
T 3i3l_A           21 MTRSKVAIIGGGPAGSVAGLTLHKLGH---DVTIYERSAFPRYRVGESLLPGTMSILNRLGLQEKIDAQNYVKKPSATFL   97 (591)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSCSSCCCCCCBCCHHHHHHHHHTTCHHHHHHHCCEEECEEEEE
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHcCCC---CEEEEcCCCCCCCceeeeECHHHHHHHHHcCCcHHHHhcCCcccCCcEEE
Confidence            456899999999999999999999987   8999999864322110 000                         0 000


Q ss_pred             CCCCCCCC------------CCCCcccccCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCC-C--cEEEeC-CC--cEEEe
Q 011351          102 FPLDKKPA------------RLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE-K--QTLITN-SG--KLLKY  163 (488)
Q Consensus       102 ~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~-~--~~v~~~-~g--~~i~y  163 (488)
                      ........            ..+.............+.+.+++.|++++.+++|+++..+ +  ..|++. +|  .++.+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~g~~~~V~~~~~G~~~~i~A  177 (591)
T 3i3l_A           98 WGQDQAPWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVRRGGESVTVES  177 (591)
T ss_dssp             CSSSCCCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECCSTTCEEEEEEETTEEEEEEE
T ss_pred             ecCCCccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEecCCceEEEEc
Confidence            00000000            0000000000000001123445679999999999999864 2  256665 66  57999


Q ss_pred             ccEEeccCCCC
Q 011351          164 GSLIVATGCTA  174 (488)
Q Consensus       164 d~lVlAtG~~~  174 (488)
                      |.+|.|+|...
T Consensus       178 dlVV~AdG~~S  188 (591)
T 3i3l_A          178 DFVIDAGGSGG  188 (591)
T ss_dssp             SEEEECCGGGC
T ss_pred             CEEEECCCCcc
Confidence            99999999754

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=98.70  E-value=7.1e-08  Score=98.79  Aligned_cols=111  Identities=14%  Similarity=0.286  Sum_probs=87.2

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc----------------------------------------cc-
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL----------------------------------------QR-  245 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l----------------------------------------~~-  245 (488)
                      ..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+.                                        .. 
T Consensus       107 ~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~~i~~~  186 (549)
T 3nlc_A          107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDP  186 (549)
T ss_dssp             CCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCCCSCCT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEEEeccc
Confidence            4679999999999999999999999999999875320                                        00 


Q ss_pred             -c-------------c----------------CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEE
Q 011351          246 -L-------------F----------------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTID  295 (488)
Q Consensus       246 -~-------------~----------------~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~  295 (488)
                       .             .                ...+.+.+.+.+++.|++++++++|+++... ++.+..|.+.+|+++.
T Consensus       187 ~~~~~~v~~~~~~~G~~~~i~~~~~p~~G~~~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~-~~~v~gV~l~~G~~i~  265 (549)
T 3nlc_A          187 NFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHME-DGQITGVTLSNGEEIK  265 (549)
T ss_dssp             TCHHHHHHHHHHHTTCCGGGGTBSSCCCCHHHHHHHHHHHHHHHHHTTCEEESSCCEEEEEES-SSBEEEEEETTSCEEE
T ss_pred             cccHHHHHHHHHHcCCCceEeeccccccccchHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEe-CCEEEEEEECCCCEEE
Confidence             0             0                0345566777788899999999999999864 5667789999999999


Q ss_pred             cCEEEEeecCccCCh--hhhhcCCc
Q 011351          296 ADTIVIGIGAKPTVS--PFERVGLN  318 (488)
Q Consensus       296 ~D~vi~a~G~~p~~~--~~~~~gl~  318 (488)
                      ||.||+|+|..+...  ++...|+.
T Consensus       266 Ad~VVlA~G~~s~~~~~~l~~~Gi~  290 (549)
T 3nlc_A          266 SRHVVLAVGHSARDTFEMLHERGVY  290 (549)
T ss_dssp             CSCEEECCCTTCHHHHHHHHHTTCC
T ss_pred             CCEEEECCCCChhhHHHHHHHcCCC
Confidence            999999999988522  34555554

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=98.68  E-value=1.7e-08  Score=104.58  Aligned_cols=122  Identities=16%  Similarity=0.136  Sum_probs=70.8

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC---------------CCCCccccCCCCCCCCC-CCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER---------------PALTKGYLFPLDKKPAR-LPG  113 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~---------------~~l~~~~~~~~~~~~~~-~~~  113 (488)
                      +++||+|||||++|+++|..|++.|+   +|+|||+.+......               ..+...+.......... +.+
T Consensus        48 ~~~DVvIVGaG~aGL~~A~~La~~G~---~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~  124 (570)
T 3fmw_A           48 LTTDVVVVGGGPVGLMLAGELRAGGV---GALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAG  124 (570)
T ss_dssp             ---CEEEECCSHHHHHHHHHHHHTTC---CEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTT
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCC---CEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCC
Confidence            46799999999999999999999988   899999986532110               00000000000000000 000


Q ss_pred             c-------ccccC-CCCC---------CCCHhHHHHCCCeEEeCCcEEEEeCCCc--EEEe--CCC-cEEEeccEEeccC
Q 011351          114 F-------HTCVG-SGGE---------RQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLIT--NSG-KLLKYGSLIVATG  171 (488)
Q Consensus       114 ~-------~~~~~-~~~~---------~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v~~--~~g-~~i~yd~lVlAtG  171 (488)
                      .       ..... ....         ..+.+.+++.+++++.+++|++++.+..  ++++  .+| +++.+|+||.|.|
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~~~~~a~~vV~ADG  204 (570)
T 3fmw_A          125 IFTQGLDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRARYGVGCDG  204 (570)
T ss_dssp             BCTTCCBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEEEEEEETTEEEEEEESEEEECSC
T ss_pred             cccccccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEeCCCcEEEEeCEEEEcCC
Confidence            0       00000 0000         0112333456899999999999977654  4555  677 6899999999999


Q ss_pred             CCC
Q 011351          172 CTA  174 (488)
Q Consensus       172 ~~~  174 (488)
                      ...
T Consensus       205 ~~S  207 (570)
T 3fmw_A          205 GRS  207 (570)
T ss_dssp             SSC
T ss_pred             CCc
Confidence            864

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=98.67  E-value=2.7e-07  Score=89.62  Aligned_cols=97  Identities=16%  Similarity=0.159  Sum_probs=78.1

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc---------------------c-cC---------HHHHHHHH
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR---------------------L-FT---------PSLAQRYE  256 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~---------------------~-~~---------~~~~~~~~  256 (488)
                      .+++|||+|+.|+.+|..|++.|.+|+++++.+.+...                     . .+         ..+.+.+.
T Consensus         4 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   83 (357)
T 4a9w_A            4 VDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLAYLA   83 (357)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHHHHH
Confidence            36999999999999999999999999999988653110                     0 00         57788888


Q ss_pred             HHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCc
Q 011351          257 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  306 (488)
Q Consensus       257 ~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~  306 (488)
                      +.+++.|++++++++|++++.. ++.+..|.+.+| ++.+|.||+|+|..
T Consensus        84 ~~~~~~~~~~~~~~~v~~i~~~-~~~~~~v~~~~g-~~~~d~vV~AtG~~  131 (357)
T 4a9w_A           84 QYEQKYALPVLRPIRVQRVSHF-GERLRVVARDGR-QWLARAVISATGTW  131 (357)
T ss_dssp             HHHHHTTCCEECSCCEEEEEEE-TTEEEEEETTSC-EEEEEEEEECCCSG
T ss_pred             HHHHHcCCEEEcCCEEEEEEEC-CCcEEEEEeCCC-EEEeCEEEECCCCC
Confidence            8889999999999999999865 333322777777 79999999999963

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=98.66  E-value=1.6e-07  Score=93.17  Aligned_cols=122  Identities=14%  Similarity=0.144  Sum_probs=72.1

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccc-cCCCC-----------------CCC--
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGY-LFPLD-----------------KKP--  108 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~-~~~~~-----------------~~~--  108 (488)
                      +++++|+|||||++|+++|..|++.|.   +|+|+|+.+.........  .+ +.+..                 ..+  
T Consensus        24 ~~~~dV~IVGaG~aGl~~A~~L~~~G~---~v~v~E~~~~~~~~~~g~--~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~   98 (398)
T 2xdo_A           24 LSDKNVAIIGGGPVGLTMAKLLQQNGI---DVSVYERDNDREARIFGG--TLDLHKGSGQEAMKKAGLLQTYYDLALPMG   98 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC---EEEEEECSSSTTCCCCSC--CEECCTTTHHHHHHHTTCHHHHHHHCBCCC
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCC---CEEEEeCCCCccccccCC--eeeeCCccHHHHHHhcChHHHHHHhhcccc
Confidence            446899999999999999999999987   899999986532210000  00 00000                 000  


Q ss_pred             ---CCCCCccccc------C-CCCCC----CCHhHHHHC--CCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEecc
Q 011351          109 ---ARLPGFHTCV------G-SGGER----QTPEWYKEK--GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVAT  170 (488)
Q Consensus       109 ---~~~~~~~~~~------~-~~~~~----~~~~~~~~~--~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAt  170 (488)
                         ....+.....      . .....    .+.+.+.+.  +++++++++|++++.+..  ++++.+|+++.+|.||.|+
T Consensus        99 ~~~~~~~g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~Ad  178 (398)
T 2xdo_A           99 VNIADEKGNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILAN  178 (398)
T ss_dssp             EEEECSSSEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSCTTSEEESCCEEEEEECSSSEEEEETTSCCEEESEEEECS
T ss_pred             eEEECCCCCchhhccccccCCCCCceECHHHHHHHHHhhcCCCEEEECCEEEEEEECCCEEEEEECCCcEEecCEEEECC
Confidence               0000000000      0 00000    011122221  357888999999986543  6778888889999999999


Q ss_pred             CCCCC
Q 011351          171 GCTAS  175 (488)
Q Consensus       171 G~~~~  175 (488)
                      |....
T Consensus       179 G~~S~  183 (398)
T 2xdo_A          179 GGMSK  183 (398)
T ss_dssp             CTTCS
T ss_pred             Ccchh
Confidence            98654

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=98.62  E-value=7.5e-08  Score=93.38  Aligned_cols=118  Identities=18%  Similarity=0.247  Sum_probs=70.3

Q ss_pred             CeEEEEcCchHHHHHHHHHHH---cCCCCCcEEEEcCCCCCCCC----CC-C---CC----ccccCCCCC----------
Q 011351           52 REFVIVGGGNAAGYAARTFVE---HGMADGRLCIVSKEAYAPYE----RP-A---LT----KGYLFPLDK----------  106 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~---~g~~~~~V~lie~~~~~~~~----~~-~---l~----~~~~~~~~~----------  106 (488)
                      +||+|||||++|+++|+.|++   .|+   +|+|+|+++.....    +. .   ..    ..++.....          
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~---~V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~   78 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPL---YLAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFYD   78 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCE---EEEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHHH
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCc---eEEEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHHH
Confidence            589999999999999999999   776   89999998643210    00 0   00    000000000          


Q ss_pred             ------CCCCC----------CCcccccCCCCCCCCH-hHHHHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEE
Q 011351          107 ------KPARL----------PGFHTCVGSGGERQTP-EWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLI  167 (488)
Q Consensus       107 ------~~~~~----------~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lV  167 (488)
                            ....+          ..............+. .+.+..+++++++++|++|..++.  +|++.+|+.+.+|+||
T Consensus        79 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vV  158 (342)
T 3qj4_A           79 ELLAYGVLRPLSSPIEGMVMKEGDCNFVAPQGISSIIKHYLKESGAEVYFRHRVTQINLRDDKWEVSKQTGSPEQFDLIV  158 (342)
T ss_dssp             HHHHTTSCEECCSCEETCCC--CCEEEECTTCTTHHHHHHHHHHTCEEESSCCEEEEEECSSSEEEEESSSCCEEESEEE
T ss_pred             HHHhCCCeecCchhhcceeccCCccceecCCCHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEE
Confidence                  00000          0000111111111122 233445899999999999987543  6777788878999999


Q ss_pred             eccCC
Q 011351          168 VATGC  172 (488)
Q Consensus       168 lAtG~  172 (488)
                      +|+..
T Consensus       159 ~A~p~  163 (342)
T 3qj4_A          159 LTMPV  163 (342)
T ss_dssp             ECSCH
T ss_pred             ECCCH
Confidence            99974

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=98.62  E-value=2.9e-07  Score=90.72  Aligned_cols=79  Identities=18%  Similarity=0.400  Sum_probs=57.4

Q ss_pred             CcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCCh
Q 011351          231 LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  310 (488)
Q Consensus       231 ~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~  310 (488)
                      ....++.+.+..+.   +..+...+.+.+++.|++++.+++|++++..+++ + .+.+.+| ++.+|.||+|+|...+ .
T Consensus       135 ~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~-~-~v~~~~g-~~~a~~vV~A~G~~~~-~  207 (389)
T 2gf3_A          135 NYNAIFEPNSGVLF---SENCIRAYRELAEARGAKVLTHTRVEDFDISPDS-V-KIETANG-SYTADKLIVSMGAWNS-K  207 (389)
T ss_dssp             TEEEEEETTCEEEE---HHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSC-E-EEEETTE-EEEEEEEEECCGGGHH-H
T ss_pred             CceEEEeCCCcEEe---HHHHHHHHHHHHHHCCCEEEcCcEEEEEEecCCe-E-EEEeCCC-EEEeCEEEEecCccHH-H
Confidence            34566666554443   3567788888899999999999999999865433 3 4666666 6999999999998754 4


Q ss_pred             hhhhcC
Q 011351          311 PFERVG  316 (488)
Q Consensus       311 ~~~~~g  316 (488)
                      ++..++
T Consensus       208 l~~~~g  213 (389)
T 2gf3_A          208 LLSKLN  213 (389)
T ss_dssp             HGGGGT
T ss_pred             Hhhhhc
Confidence            555444

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=98.62  E-value=5.4e-08  Score=91.78  Aligned_cols=122  Identities=10%  Similarity=0.100  Sum_probs=69.6

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHc-CCCCCcEEEEcCCCCCCCCCCCCCccccCC----CC--------CCCCCC-CCcc
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKEAYAPYERPALTKGYLFP----LD--------KKPARL-PGFH  115 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~-g~~~~~V~lie~~~~~~~~~~~l~~~~~~~----~~--------~~~~~~-~~~~  115 (488)
                      .++||+|||||++|+++|..|++. |.   +|+|||+.+...... ......+..    ..        ..+... ..+.
T Consensus        38 ~~~dVvIIGgG~aGl~aA~~la~~~G~---~V~viEk~~~~gg~~-~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~  113 (284)
T 1rp0_A           38 AETDVVVVGAGSAGLSAAYEISKNPNV---QVAIIEQSVSPGGGA-WLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYV  113 (284)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTS---CEEEEESSSSCCTTT-TCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEE
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCC---eEEEEECCCCCCCce-ecCCcchHHHHcCcHHHHHHHHcCCCcccCCCEE
Confidence            457999999999999999999997 76   899999987542110 000000000    00        000000 0000


Q ss_pred             cc-cCCCCCCCCHhHHHH-CCCeEEeCCcEEEEeCCCcEE---EeC---------CC-----cEEEeccEEeccCCCCC
Q 011351          116 TC-VGSGGERQTPEWYKE-KGIEMIYQDPVTSIDIEKQTL---ITN---------SG-----KLLKYGSLIVATGCTAS  175 (488)
Q Consensus       116 ~~-~~~~~~~~~~~~~~~-~~i~~~~~~~v~~id~~~~~v---~~~---------~g-----~~i~yd~lVlAtG~~~~  175 (488)
                      .. ........+.+.+.+ .+++++.+++|+++..+...+   .+.         ++     ..+.+|.+|+|||..+.
T Consensus       114 ~~~~~~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~  192 (284)
T 1rp0_A          114 VVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGP  192 (284)
T ss_dssp             EESCHHHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSST
T ss_pred             EecCHHHHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchH
Confidence            00 000000011222333 589999999999998665432   332         22     56999999999997654

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=98.59  E-value=7.4e-08  Score=96.26  Aligned_cols=57  Identities=14%  Similarity=0.279  Sum_probs=46.9

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  308 (488)
Q Consensus       248 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~  308 (488)
                      ...+.+.+.+.+++.|+++++++.|+++..+ ++++  | ..+|+++.+|.||+|+|....
T Consensus       188 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~v--V-~~~g~~~~ad~Vv~a~~~~~~  244 (421)
T 3nrn_A          188 CKAVIDELERIIMENKGKILTRKEVVEINIE-EKKV--Y-TRDNEEYSFDVAISNVGVRET  244 (421)
T ss_dssp             HHHHHHHHHHHHHTTTCEEESSCCEEEEETT-TTEE--E-ETTCCEEECSEEEECSCHHHH
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCeEEEEEEE-CCEE--E-EeCCcEEEeCEEEECCCHHHH
Confidence            3567888889999999999999999999854 4544  4 567888999999999997643

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=98.58  E-value=7.5e-08  Score=99.40  Aligned_cols=38  Identities=18%  Similarity=0.343  Sum_probs=34.1

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   89 (488)
                      .++++|+|||||++|+++|..|++.|.   +|+|||+.+..
T Consensus         3 ~~~~dVlIVGaG~aGl~~A~~La~~G~---~v~viEr~~~~   40 (535)
T 3ihg_A            3 DHEVDVLVVGAGLGGLSTAMFLARQGV---RVLVVERRPGL   40 (535)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHTTTC---CEEEECSSSSC
T ss_pred             CccCcEEEECcCHHHHHHHHHHHHCCC---CEEEEeCCCCC
Confidence            456899999999999999999999988   89999998753

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=98.58  E-value=1.9e-08  Score=99.05  Aligned_cols=64  Identities=17%  Similarity=0.132  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcC
Q 011351          249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG  316 (488)
Q Consensus       249 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~g  316 (488)
                      ..+...+.+.+++.|+++++++.|+++..+++ . ..|.+.+| ++.+|.||+|+|.... .+++.++
T Consensus       154 ~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~-~-~~V~t~~g-~i~a~~VV~A~G~~s~-~l~~~~g  217 (381)
T 3nyc_A          154 DALHQGYLRGIRRNQGQVLCNHEALEIRRVDG-A-WEVRCDAG-SYRAAVLVNAAGAWCD-AIAGLAG  217 (381)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCCCCEEEEETT-E-EEEECSSE-EEEESEEEECCGGGHH-HHHHHHT
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEEeCC-e-EEEEeCCC-EEEcCEEEECCChhHH-HHHHHhC
Confidence            46777788888999999999999999986533 3 46788777 7999999999998653 3444443

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=98.57  E-value=5.5e-08  Score=99.79  Aligned_cols=124  Identities=17%  Similarity=0.215  Sum_probs=72.4

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-CC-C---cccc--CC-------CCCCCC-----
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-AL-T---KGYL--FP-------LDKKPA-----  109 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~-~l-~---~~~~--~~-------~~~~~~-----  109 (488)
                      ++++||+|||||++|+++|..|++.|+   +|+|||+.+...+... .+ +   ..++  ..       ......     
T Consensus         5 ~~~~dVvIVGgG~aGl~aA~~La~~G~---~V~liE~~~~~~~~~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~   81 (512)
T 3e1t_A            5 PEVFDLIVIGGGPGGSTLASFVAMRGH---RVLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGTF   81 (512)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHTTTC---CEEEECSSCSSCCCSCCBCCHHHHTTHHHHTTCHHHHHTTTCCEECEEEE
T ss_pred             CccCCEEEECcCHHHHHHHHHHHhCCC---CEEEEccCCCCCCCCCcccCcchHHHHHHHhCcHHHHHHcCCccccCceE
Confidence            345799999999999999999999987   8999999873321100 00 0   0000  00       000000     


Q ss_pred             CCCC--------ccc--ccCCCCC---------CCCHhHHHHCCCeEEeCCcEEEEeCCCcE---EE--eCCCc--EEEe
Q 011351          110 RLPG--------FHT--CVGSGGE---------RQTPEWYKEKGIEMIYQDPVTSIDIEKQT---LI--TNSGK--LLKY  163 (488)
Q Consensus       110 ~~~~--------~~~--~~~~~~~---------~~~~~~~~~~~i~~~~~~~v~~id~~~~~---v~--~~~g~--~i~y  163 (488)
                      ....        +..  .......         ..+.+.+.+.|++++.+++|+++..++..   |+  ..+|+  ++.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~~~v~gv~~~~~dG~~~~i~a  161 (512)
T 3e1t_A           82 RWGKEPEPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGVDVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHA  161 (512)
T ss_dssp             ECSSCSSCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEETTEEEEEEEECSSSCEEEEEE
T ss_pred             EecCCccccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEECCEEEEEEEEeCCCCEEEEEc
Confidence            0000        000  0000000         01123345579999999999999876653   33  34564  7999


Q ss_pred             ccEEeccCCCCC
Q 011351          164 GSLIVATGCTAS  175 (488)
Q Consensus       164 d~lVlAtG~~~~  175 (488)
                      |.||.|+|....
T Consensus       162 d~VI~AdG~~S~  173 (512)
T 3e1t_A          162 RFIVDASGNRTR  173 (512)
T ss_dssp             EEEEECCCTTCS
T ss_pred             CEEEECCCcchH
Confidence            999999998654

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.56  E-value=3.7e-08  Score=97.09  Aligned_cols=46  Identities=30%  Similarity=0.338  Sum_probs=36.5

Q ss_pred             hHHHHCCCeEEeCCcEEEEeCCCcE---EEeCCCcEEEeccEEeccCCCC
Q 011351          128 EWYKEKGIEMIYQDPVTSIDIEKQT---LITNSGKLLKYGSLIVATGCTA  174 (488)
Q Consensus       128 ~~~~~~~i~~~~~~~v~~id~~~~~---v~~~~g~~i~yd~lVlAtG~~~  174 (488)
                      +.+++.|++++.+++|+++..++..   |++.+| ++.+|+||+|+|...
T Consensus       157 ~~~~~~Gv~i~~~~~v~~i~~~~~~v~gv~~~~g-~i~a~~VV~A~G~~s  205 (382)
T 1y56_B          157 VKAKEYGAKLLEYTEVKGFLIENNEIKGVKTNKG-IIKTGIVVNATNAWA  205 (382)
T ss_dssp             HHHHHTTCEEECSCCEEEEEESSSBEEEEEETTE-EEECSEEEECCGGGH
T ss_pred             HHHHHCCCEEECCceEEEEEEECCEEEEEEECCc-EEECCEEEECcchhH
Confidence            4456679999999999999866543   566666 699999999999754

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.55  E-value=3e-07  Score=88.44  Aligned_cols=100  Identities=18%  Similarity=0.239  Sum_probs=81.0

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccc------------------cCHHHHHHHHHHHHHcCcEEEcC
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL------------------FTPSLAQRYEQLYQQNGVKFVKG  269 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~------------------~~~~~~~~~~~~l~~~GV~v~~~  269 (488)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++.+.+-...                  ...++...+.+.+++.|++++++
T Consensus         8 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (332)
T 3lzw_A            8 YDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNLKEQMAKFDQTICLE   87 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHHCTTSEECCSTTCSSEEHHHHHHHHHHHHTTSCCEEECS
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceehhcCCCceEeccCCCCCCCHHHHHHHHHHHHHHhCCcEEcc
Confidence            579999999999999999999999999999976432110                  12567778888888889999999


Q ss_pred             CeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecC---ccCC
Q 011351          270 ASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA---KPTV  309 (488)
Q Consensus       270 ~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~---~p~~  309 (488)
                      ++|++++..+++. ..+.+.+|+ +.+|.||+|+|.   .|..
T Consensus        88 ~~v~~i~~~~~~~-~~v~~~~g~-~~~d~vVlAtG~~~~~p~~  128 (332)
T 3lzw_A           88 QAVESVEKQADGV-FKLVTNEET-HYSKTVIITAGNGAFKPRK  128 (332)
T ss_dssp             CCEEEEEECTTSC-EEEEESSEE-EEEEEEEECCTTSCCEECC
T ss_pred             CEEEEEEECCCCc-EEEEECCCE-EEeCEEEECCCCCcCCCCC
Confidence            9999998754423 357788886 999999999999   6653

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=98.54  E-value=4.2e-08  Score=96.86  Aligned_cols=37  Identities=27%  Similarity=0.467  Sum_probs=33.7

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   89 (488)
                      +++||+||||||||+++|..|+++|+   +|+|+|+.+..
T Consensus         3 e~yDViIVGaGpaGl~~A~~La~~G~---~V~v~Er~~~~   39 (397)
T 3oz2_A            3 ETYDVLVVGGGPGGSTAARYAAKYGL---KTLMIEKRPEI   39 (397)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSST
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCC---cEEEEeCCCCC
Confidence            35899999999999999999999998   89999997654

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=98.54  E-value=9.1e-08  Score=94.21  Aligned_cols=37  Identities=16%  Similarity=0.266  Sum_probs=33.2

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      ..++||+|||||++|+++|+.|++.|.   +|+|||++..
T Consensus        15 ~~~~dvvIIGgG~~Gl~~A~~La~~G~---~V~llE~~~~   51 (382)
T 1ryi_A           15 KRHYEAVVIGGGIIGSAIAYYLAKENK---NTALFESGTM   51 (382)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSST
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHhCCC---cEEEEeCCCC
Confidence            446899999999999999999999987   8999999753

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=98.54  E-value=6.2e-08  Score=96.37  Aligned_cols=125  Identities=11%  Similarity=0.035  Sum_probs=70.6

Q ss_pred             CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC---------------CC-----------Ccc-c
Q 011351           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP---------------AL-----------TKG-Y  100 (488)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~---------------~l-----------~~~-~  100 (488)
                      .++++||+|||||++|+++|..|++.|+   +|+|+|+.+.......               .+           ... +
T Consensus        20 ~~~~~dV~IVGaG~aGl~~A~~La~~G~---~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~   96 (407)
T 3rp8_A           20 FQGHMKAIVIGAGIGGLSAAVALKQSGI---DCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAY   96 (407)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHSCCCCEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCC---CEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhcCCCcceEE
Confidence            3456899999999999999999999988   8999999865311000               00           000 0


Q ss_pred             cCCC-CCCCCCCCCcc--cc-cCCCCCC---CCHhHHHH--CCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEec
Q 011351          101 LFPL-DKKPARLPGFH--TC-VGSGGER---QTPEWYKE--KGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVA  169 (488)
Q Consensus       101 ~~~~-~~~~~~~~~~~--~~-~~~~~~~---~~~~~~~~--~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlA  169 (488)
                      .... ......++...  .. ....+..   .+.+.+.+  ..++++.+++|++++.+..  ++++.+|+++.+|.||.|
T Consensus        97 ~~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~A  176 (407)
T 3rp8_A           97 RDFRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGRDSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAA  176 (407)
T ss_dssp             EETTTCCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCGGGEEESCCEEEEEEETTEEEEEETTSCEEEESEEEEC
T ss_pred             EECCCCCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCcCEEEECCEEEEEEecCCcEEEEEcCCCEEeeCEEEEC
Confidence            0000 00000000000  00 0000000   01111111  1278889999999987654  567788999999999999


Q ss_pred             cCCCCC
Q 011351          170 TGCTAS  175 (488)
Q Consensus       170 tG~~~~  175 (488)
                      +|....
T Consensus       177 dG~~S~  182 (407)
T 3rp8_A          177 DGSHSA  182 (407)
T ss_dssp             CCTTCS
T ss_pred             CCcChH
Confidence            997643

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=98.53  E-value=5.1e-07  Score=89.73  Aligned_cols=100  Identities=22%  Similarity=0.283  Sum_probs=78.7

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccc---------------------------------------
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL---------------------------------------  246 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~---------------------------------------  246 (488)
                      ...+|+|||+|+.|+.+|..|++.|.+|+++++.+.+..+.                                       
T Consensus        26 ~~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~~~~~  105 (417)
T 3v76_A           26 EKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARYRPQD  105 (417)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHSCHHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhcCHHH
Confidence            34579999999999999999999999999999876432100                                       


Q ss_pred             ------------------------cCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEe
Q 011351          247 ------------------------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG  302 (488)
Q Consensus       247 ------------------------~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a  302 (488)
                                              ....+.+.+.+.+++.|++++++++|+++..+++ . ..|.+.+| ++.+|.||+|
T Consensus       106 ~~~~~~~~Gi~~~~~~~g~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~-~-~~V~~~~g-~i~ad~VIlA  182 (417)
T 3v76_A          106 FVALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTAS-G-FRVTTSAG-TVDAASLVVA  182 (417)
T ss_dssp             HHHHHHHTTCCEEECSTTEEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETT-E-EEEEETTE-EEEESEEEEC
T ss_pred             HHHHHHHcCCCcEEeeCCEEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCC-E-EEEEECCc-EEEeeEEEEC
Confidence                                    0124566777888889999999999999986533 3 36778887 7999999999


Q ss_pred             ecCccC
Q 011351          303 IGAKPT  308 (488)
Q Consensus       303 ~G~~p~  308 (488)
                      +|..+.
T Consensus       183 tG~~S~  188 (417)
T 3v76_A          183 SGGKSI  188 (417)
T ss_dssp             CCCSSC
T ss_pred             CCCccC
Confidence            998863

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=98.53  E-value=6.1e-08  Score=98.99  Aligned_cols=121  Identities=15%  Similarity=0.204  Sum_probs=73.2

Q ss_pred             CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC-C--------------CCCCccccCCCCCCCCC--
Q 011351           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE-R--------------PALTKGYLFPLDKKPAR--  110 (488)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~-~--------------~~l~~~~~~~~~~~~~~--  110 (488)
                      ..++++|+|||||++|+++|..|++.|.   +|+|||+.+..... +              ..+...+...   .+..  
T Consensus         8 ~~~~~dVlIVGaGpaGl~~A~~La~~G~---~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~---~~~~~~   81 (500)
T 2qa1_A            8 HRSDAAVIVVGAGPAGMMLAGELRLAGV---EVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEV---ETSTQG   81 (500)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHTTC---CEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSC---CBCCEE
T ss_pred             ccCCCCEEEECcCHHHHHHHHHHHHCCC---CEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhc---cccccc
Confidence            3456899999999999999999999988   89999998653211 0              0000000000   0000  


Q ss_pred             -CCCcc-ccc--CCC-----------CCCCCHhHHHHCCCeEEeCCcEEEEeCCCc--EEEeCCCc---EEEeccEEecc
Q 011351          111 -LPGFH-TCV--GSG-----------GERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGK---LLKYGSLIVAT  170 (488)
Q Consensus       111 -~~~~~-~~~--~~~-----------~~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~---~i~yd~lVlAt  170 (488)
                       +.+.. ...  ...           ....+.+.+.+.+++++.+++|+++..+..  ++++.++.   ++.+|+||.|.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgAD  161 (500)
T 2qa1_A           82 HFGGLPIDFGVLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYLVGCD  161 (500)
T ss_dssp             EETTEEEEGGGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECC
T ss_pred             cccceecccccCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCCeEEEEEEcCCCCEEEEeCEEEECC
Confidence             00000 000  000           000112334556899999999999976554  45555654   79999999999


Q ss_pred             CCCC
Q 011351          171 GCTA  174 (488)
Q Consensus       171 G~~~  174 (488)
                      |...
T Consensus       162 G~~S  165 (500)
T 2qa1_A          162 GGRS  165 (500)
T ss_dssp             CTTC
T ss_pred             Ccch
Confidence            9865

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=98.50  E-value=1.1e-07  Score=98.81  Aligned_cols=38  Identities=24%  Similarity=0.417  Sum_probs=33.9

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   89 (488)
                      ...+||||||||+||++||..|++.|.   +|+|||+.+..
T Consensus       119 ~~~~DVvVVG~G~aGl~aA~~la~~G~---~V~vlEk~~~~  156 (566)
T 1qo8_A          119 SETTQVLVVGAGSAGFNASLAAKKAGA---NVILVDKAPFS  156 (566)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHHTC---CEEEECSSSSS
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEeCCCCC
Confidence            345799999999999999999999987   89999998754

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=98.50  E-value=1.5e-07  Score=97.77  Aligned_cols=37  Identities=27%  Similarity=0.437  Sum_probs=33.5

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   89 (488)
                      ..+||||||||+||++||..|++.|.   +|+|||+.+..
T Consensus       125 ~~~DVvVVGaG~aGl~aA~~la~~G~---~V~vlEk~~~~  161 (571)
T 1y0p_A          125 DTVDVVVVGSGGAGFSAAISATDSGA---KVILIEKEPVI  161 (571)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEeCCCCC
Confidence            35899999999999999999999987   89999998754

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=98.50  E-value=1.6e-07  Score=95.81  Aligned_cols=123  Identities=15%  Similarity=0.178  Sum_probs=73.0

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC-C--------------CCCCccccCCCCCCCCCCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE-R--------------PALTKGYLFPLDKKPARLPG  113 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~-~--------------~~l~~~~~~~~~~~~~~~~~  113 (488)
                      .++++|+|||||++|+++|..|++.|.   +|+|||+.+..... +              ..+...+..........+.+
T Consensus        10 ~~~~dVlIVGaGpaGl~~A~~La~~G~---~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~   86 (499)
T 2qa2_A           10 RSDASVIVVGAGPAGLMLAGELRLGGV---DVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVETSTQGHFGG   86 (499)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCCEESEEEETT
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCC---CEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhccccccceecc
Confidence            456899999999999999999999988   89999998653211 0              00000000000000000000


Q ss_pred             cc-ccc--CCC-----------CCCCCHhHHHHCCCeEEeCCcEEEEeCCCc--EEEeCCCc---EEEeccEEeccCCCC
Q 011351          114 FH-TCV--GSG-----------GERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGK---LLKYGSLIVATGCTA  174 (488)
Q Consensus       114 ~~-~~~--~~~-----------~~~~~~~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~---~i~yd~lVlAtG~~~  174 (488)
                      .. ...  ...           ....+.+.+.+.+++++.+++|++++.+..  ++++.++.   ++.+|+||.|.|...
T Consensus        87 ~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S  166 (499)
T 2qa2_A           87 RPVDFGVLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDGGRS  166 (499)
T ss_dssp             EEEEGGGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSCEEEEEECSSCEEEEEEEEEEECCCTTC
T ss_pred             eecccccCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCcEEEEeCEEEEccCccc
Confidence            00 000  000           000112334556899999999999976543  56666664   799999999999865

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.49  E-value=1.5e-07  Score=95.16  Aligned_cols=99  Identities=17%  Similarity=0.285  Sum_probs=75.2

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      ..++++|||||++|+.+|..|++.|.   +|+|+++.+...   |...           ..+           .....+.
T Consensus       166 ~~~~vvIiGgG~~g~e~A~~l~~~g~---~V~lv~~~~~~l---~~~~-----------~~~-----------~~~l~~~  217 (455)
T 2yqu_A          166 VPKRLIVVGGGVIGLELGVVWHRLGA---EVIVLEYMDRIL---PTMD-----------LEV-----------SRAAERV  217 (455)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSC---TTSC-----------HHH-----------HHHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCC---EEEEEecCCccc---cccC-----------HHH-----------HHHHHHH
Confidence            35799999999999999999999886   899999876521   1000           000           0123556


Q ss_pred             HHHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCCCc
Q 011351          130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR  176 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~~~  176 (488)
                      +++.|++++.+++|++++.++.  .+.+.+++++.+|.||+|+|..|..
T Consensus       218 l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vv~A~G~~p~~  266 (455)
T 2yqu_A          218 FKKQGLTIRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVGRRPYT  266 (455)
T ss_dssp             HHHHTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECC
T ss_pred             HHHCCCEEEECCEEEEEEEeCCEEEEEECCCeEEEcCEEEECcCCCcCC
Confidence            7788999999999999987654  4555688889999999999988753

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.49  E-value=1.8e-07  Score=92.17  Aligned_cols=101  Identities=24%  Similarity=0.400  Sum_probs=77.8

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc-c-ccC---------HHHHHHHHHHHHHcCcEEEcCCeEEE
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-R-LFT---------PSLAQRYEQLYQQNGVKFVKGASIKN  274 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~-~-~~~---------~~~~~~~~~~l~~~GV~v~~~~~v~~  274 (488)
                      ...+|+|||+|+.|+.+|..|...+.+|+++++.+.+.. + .++         .++.....+.+++.||+++++++|++
T Consensus         8 ~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~~~~l~~~l~g~~~~~~l~~~~~~~~~~~~i~~~~~~~V~~   87 (385)
T 3klj_A            8 KSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKSIDDILIKKNDWYEKNNIKVITSEFATS   87 (385)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBCGGGHHHHHHSCCCGGGTBSSCHHHHHHTTCEEECSCCEEE
T ss_pred             CCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcccChhhHHHcCCCCHHHccCCCHHHHHHCCCEEEeCCEEEE
Confidence            345799999999999999999778889999998876421 1 011         11112234667888999999999999


Q ss_pred             EEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCCh
Q 011351          275 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  310 (488)
Q Consensus       275 i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~  310 (488)
                      ++.. ..   .|.+++|+++.+|.+|+|||.+|...
T Consensus        88 id~~-~~---~v~~~~g~~~~yd~lvlAtG~~p~~p  119 (385)
T 3klj_A           88 IDPN-NK---LVTLKSGEKIKYEKLIIASGSIANKI  119 (385)
T ss_dssp             EETT-TT---EEEETTSCEEECSEEEECCCEEECCC
T ss_pred             EECC-CC---EEEECCCCEEECCEEEEecCCCcCCC
Confidence            9854 22   57889999999999999999988753

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=98.49  E-value=3.2e-07  Score=95.41  Aligned_cols=37  Identities=38%  Similarity=0.553  Sum_probs=33.1

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHc------CCCCCcEEEEcCCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEH------GMADGRLCIVSKEAYA   89 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~------g~~~~~V~lie~~~~~   89 (488)
                      +.+||+|||||+||+++|..|++.      |.   +|+|||+.+..
T Consensus        34 ~~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~---~V~vlEk~~~~   76 (584)
T 2gmh_A           34 EEADVVIVGAGPAGLSAATRLKQLAAQHEKDL---RVCLVEKAAHI   76 (584)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHHHTTCCC---CEEEECSSSST
T ss_pred             cCCCEEEECcCHHHHHHHHHHHhcccccCCCC---cEEEEeCCCCC
Confidence            358999999999999999999998      77   89999998654

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.49  E-value=3.3e-08  Score=99.83  Aligned_cols=123  Identities=18%  Similarity=0.282  Sum_probs=71.5

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC-CCCC---CCccccC--C-CCCCCC----CCCCcccc-
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY-ERPA---LTKGYLF--P-LDKKPA----RLPGFHTC-  117 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~-~~~~---l~~~~~~--~-~~~~~~----~~~~~~~~-  117 (488)
                      +++||+|||||+||+++|..|++.|.   +|+|+|+.+.... ..+.   +....+.  . ......    ...+.... 
T Consensus         5 ~~~dVvIVGaG~aGl~aA~~La~~G~---~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~~~~~~~~~   81 (453)
T 3atr_A            5 LKYDVLIIGGGFAGSSAAYQLSRRGL---KILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIKLYS   81 (453)
T ss_dssp             EECSEEEECCSHHHHHHHHHHSSSSC---CEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEEEEEEEEEC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCC---CEEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhhhcceEEEC
Confidence            35899999999999999999999987   8999999864211 1000   0000000  0 000000    00000000 


Q ss_pred             ---------cCCC-------CCCCCHhHHHHCCCeEEeCCcEEEEeCCCcE---EEeC---CCc--EEEeccEEeccCCC
Q 011351          118 ---------VGSG-------GERQTPEWYKEKGIEMIYQDPVTSIDIEKQT---LITN---SGK--LLKYGSLIVATGCT  173 (488)
Q Consensus       118 ---------~~~~-------~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~---v~~~---~g~--~i~yd~lVlAtG~~  173 (488)
                               .+..       ....+.+.+.+.|++++.+++|++++.++..   |++.   +|+  ++.+|.||.|+|..
T Consensus        82 ~~~~~~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~  161 (453)
T 3atr_A           82 PDMQTVWTVNGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEATGYS  161 (453)
T ss_dssp             TTSSCEEEEEEEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTTEEEEEECSEEEECCGGG
T ss_pred             CCCceEEeECCCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCceEEEEcCEEEECcCCc
Confidence                     0000       0001122334579999999999999876544   3443   665  78999999999976


Q ss_pred             CC
Q 011351          174 AS  175 (488)
Q Consensus       174 ~~  175 (488)
                      ..
T Consensus       162 s~  163 (453)
T 3atr_A          162 RS  163 (453)
T ss_dssp             CT
T ss_pred             hh
Confidence            54

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.49  E-value=1.3e-06  Score=85.27  Aligned_cols=99  Identities=15%  Similarity=0.196  Sum_probs=80.0

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc------------------ccCHHHHHHHHHHHHHcCcEEEc
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------LFTPSLAQRYEQLYQQNGVKFVK  268 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~------------------~~~~~~~~~~~~~l~~~GV~v~~  268 (488)
                      ..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+-..                  ....++.+.+.+.+++.|+++++
T Consensus        14 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~   93 (360)
T 3ab1_A           14 MRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAALYPEKHIYDVAGFPEVPAIDLVESLWAQAERYNPDVVL   93 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHHTTCCEEEC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCcccccCCCcccccCCCCCCCCHHHHHHHHHHHHHHhCCEEEc
Confidence            457999999999999999999999999999987643110                  01256677778888888999999


Q ss_pred             CCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCc
Q 011351          269 GASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  306 (488)
Q Consensus       269 ~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~  306 (488)
                      +++|+.++..+++. ..|.+.+|+++.+|.+|+|+|..
T Consensus        94 ~~~v~~i~~~~~~~-~~v~~~~g~~~~~~~li~AtG~~  130 (360)
T 3ab1_A           94 NETVTKYTKLDDGT-FETRTNTGNVYRSRAVLIAAGLG  130 (360)
T ss_dssp             SCCEEEEEECTTSC-EEEEETTSCEEEEEEEEECCTTC
T ss_pred             CCEEEEEEECCCce-EEEEECCCcEEEeeEEEEccCCC
Confidence            99999998654433 35778888889999999999994

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.48  E-value=6.5e-07  Score=86.30  Aligned_cols=101  Identities=15%  Similarity=0.220  Sum_probs=79.1

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC----cC------------ccc----ccCHHHHHHHHHHHHHcCcE
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN----HL------------LQR----LFTPSLAQRYEQLYQQNGVK  265 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~----~~------------l~~----~~~~~~~~~~~~~l~~~GV~  265 (488)
                      ..++|+|||+|+.|+.+|..|++.|.+|+++++.+    .+            ++.    ...+++...+.+.+++.|++
T Consensus        21 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~  100 (338)
T 3itj_A           21 VHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQSTKFGTE  100 (338)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccchhhcccCCCcccCCHHHHHHHHHHHHHHcCCE
Confidence            34689999999999999999999999999999843    11            001    11347778888999999999


Q ss_pred             EEcCCeEEEEEeCCCCcEEEEEe---CCCcEEEcCEEEEeecCccCC
Q 011351          266 FVKGASIKNLEAGSDGRVAAVKL---EDGSTIDADTIVIGIGAKPTV  309 (488)
Q Consensus       266 v~~~~~v~~i~~~~~~~v~~v~l---~~g~~i~~D~vi~a~G~~p~~  309 (488)
                      ++.++ +..++.. ++.+ .+.+   .++.++.+|.+|+|+|.+|..
T Consensus       101 i~~~~-v~~i~~~-~~~~-~v~~~~~~~~~~~~~d~vvlAtG~~~~~  144 (338)
T 3itj_A          101 IITET-VSKVDLS-SKPF-KLWTEFNEDAEPVTTDAIILATGASAKR  144 (338)
T ss_dssp             EECSC-EEEEECS-SSSE-EEEETTCSSSCCEEEEEEEECCCEEECC
T ss_pred             EEEeE-EEEEEEc-CCEE-EEEEEecCCCcEEEeCEEEECcCCCcCC
Confidence            99998 9999854 3333 4555   467789999999999998764

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=98.48  E-value=2.1e-06  Score=88.51  Aligned_cols=102  Identities=16%  Similarity=0.195  Sum_probs=81.9

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc--------------------c----------------cCHHH
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------------------L----------------FTPSL  251 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~--------------------~----------------~~~~~  251 (488)
                      .+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+...                    .                -.+++
T Consensus        22 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~~~ei  101 (549)
T 4ap3_A           22 YDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQPEI  101 (549)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCBHHHH
T ss_pred             CCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCCHHHH
Confidence            57999999999999999999999999999986532100                    0                12466


Q ss_pred             HHHHHHHHHHcCc--EEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeec--CccCC
Q 011351          252 AQRYEQLYQQNGV--KFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG--AKPTV  309 (488)
Q Consensus       252 ~~~~~~~l~~~GV--~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G--~~p~~  309 (488)
                      .+++.+.+++.|+  +++++++|++++.+++.....|.+.+|+++.+|.||+|+|  .+|..
T Consensus       102 ~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~~  163 (549)
T 4ap3_A          102 LAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNANT  163 (549)
T ss_dssp             HHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECCC
T ss_pred             HHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCCC
Confidence            7788888888898  8999999999986655445578889999999999999999  45543

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.47  E-value=1.1e-06  Score=84.69  Aligned_cols=97  Identities=18%  Similarity=0.220  Sum_probs=78.0

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc------------------cccCHHHHHHHHHHHHHcCcEEEcC
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------------RLFTPSLAQRYEQLYQQNGVKFVKG  269 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~------------------~~~~~~~~~~~~~~l~~~GV~v~~~  269 (488)
                      .+++|||+|+.|+.+|..|++.|.+|+++++.+.+..                  .....++.+.+.+.+++.+++++++
T Consensus         6 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~   85 (335)
T 2zbw_A            6 TDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTALYPEKYIYDVAGFPKVYAKDLVKGLVEQVAPFNPVYSLG   85 (335)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHGGGCCEEEES
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeccCCCceeeccCCCCCCCHHHHHHHHHHHHHHcCCEEEeC
Confidence            5799999999999999999999999999998764311                  0012456677777788889999999


Q ss_pred             CeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCc
Q 011351          270 ASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  306 (488)
Q Consensus       270 ~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~  306 (488)
                      ++|+.++..++ . ..+.+.+|+++.+|.||+|+|..
T Consensus        86 ~~v~~i~~~~~-~-~~v~~~~g~~~~~~~lv~AtG~~  120 (335)
T 2zbw_A           86 ERAETLEREGD-L-FKVTTSQGNAYTAKAVIIAAGVG  120 (335)
T ss_dssp             CCEEEEEEETT-E-EEEEETTSCEEEEEEEEECCTTS
T ss_pred             CEEEEEEECCC-E-EEEEECCCCEEEeCEEEECCCCC
Confidence            99999986533 2 35777888889999999999994

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.46  E-value=2.1e-07  Score=92.08  Aligned_cols=120  Identities=15%  Similarity=0.200  Sum_probs=72.0

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC---CCCCCC-CCcc-------------c-----------cC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA---PYERPA-LTKG-------------Y-----------LF  102 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~---~~~~~~-l~~~-------------~-----------~~  102 (488)
                      ++||+|||||++|+++|..|++.|+   +|+|+|+.+..   .-.+.. +...             +           +.
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~G~---~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~   78 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKAGI---DNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIA   78 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTC---CEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEE
T ss_pred             CccEEEECCCHHHHHHHHHHHHCCC---CEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEE
Confidence            4799999999999999999999988   89999997631   000000 0000             0           00


Q ss_pred             CCCCCCCCCCCccccc-CCC--------CCCCCHhHHHHCCCeEEeCCcEEEEeCCC---cEEEe-CCCc--EEEeccEE
Q 011351          103 PLDKKPARLPGFHTCV-GSG--------GERQTPEWYKEKGIEMIYQDPVTSIDIEK---QTLIT-NSGK--LLKYGSLI  167 (488)
Q Consensus       103 ~~~~~~~~~~~~~~~~-~~~--------~~~~~~~~~~~~~i~~~~~~~v~~id~~~---~~v~~-~~g~--~i~yd~lV  167 (488)
                      .... ...+ .+.... +..        ....+.+.+.+.+++++.+++|+++..+.   ..|++ .+|+  ++.+|.||
T Consensus        79 ~~~~-~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~~~~~~a~~vV  156 (394)
T 1k0i_A           79 FAGQ-RRRI-DLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIA  156 (394)
T ss_dssp             ETTE-EEEE-CHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEE
T ss_pred             ECCc-eEEe-ccccccCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCceEEEEecCCcEEEEEeCEEE
Confidence            0000 0000 000000 000        00011223345699999999999997642   46776 6887  79999999


Q ss_pred             eccCCCCC
Q 011351          168 VATGCTAS  175 (488)
Q Consensus       168 lAtG~~~~  175 (488)
                      .|+|....
T Consensus       157 ~AdG~~S~  164 (394)
T 1k0i_A          157 GCDGFHGI  164 (394)
T ss_dssp             ECCCTTCS
T ss_pred             ECCCCCcH
Confidence            99998654

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=98.45  E-value=2.3e-07  Score=93.12  Aligned_cols=100  Identities=22%  Similarity=0.322  Sum_probs=77.4

Q ss_pred             CeEEEECCCHHHHHHHHHHHh---CCCcEEEEecCCcCcccc----------cCHHHHHHHHHHHHHcCcEEEcCCeEEE
Q 011351          208 KKVVVVGGGYIGMEVAAAAVG---WKLDTTIIFPENHLLQRL----------FTPSLAQRYEQLYQQNGVKFVKGASIKN  274 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~---~g~~v~lv~~~~~~l~~~----------~~~~~~~~~~~~l~~~GV~v~~~~~v~~  274 (488)
                      ++|+|||+|+.|+.+|..|++   .+.+|+++++.+.+....          ...++...+.+.+++.||+++. .+++.
T Consensus         5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~   83 (437)
T 3sx6_A            5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHFIA-QSAEQ   83 (437)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEECGGGHHHHHHTSSCHHHHEEECHHHHHTTTCEEEC-SCEEE
T ss_pred             CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcccCCccccccCccCHHHHHHHHHHHHHHCCCEEEE-eEEEE
Confidence            689999999999999999999   789999999987642211          1112333356677889999985 58999


Q ss_pred             EEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhh
Q 011351          275 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF  312 (488)
Q Consensus       275 i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~  312 (488)
                      ++.. +.   .|.+++|+++.+|.+|+|+|.+|+...+
T Consensus        84 id~~-~~---~V~~~~g~~i~~d~lviAtG~~~~~~~i  117 (437)
T 3sx6_A           84 IDAE-AQ---NITLADGNTVHYDYLMIATGPKLAFENV  117 (437)
T ss_dssp             EETT-TT---EEEETTSCEEECSEEEECCCCEECGGGS
T ss_pred             EEcC-CC---EEEECCCCEEECCEEEECCCCCcCcccC
Confidence            9853 22   5778899899999999999999875433

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.45  E-value=1.4e-06  Score=85.54  Aligned_cols=97  Identities=22%  Similarity=0.254  Sum_probs=79.3

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc-----------------------------------------
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----------------------------------------  245 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~-----------------------------------------  245 (488)
                      ..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+...                                         
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~~   90 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMHNKS   90 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEETTEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEeCCce
Confidence            468999999999999999999999999999987654210                                         


Q ss_pred             --ccC-----------HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351          246 --LFT-----------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  308 (488)
Q Consensus       246 --~~~-----------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~  308 (488)
                        .++           ..+.+.+.+.+++.|+++++++++++++.  ++   .|.+.+|+++.+|.||.|+|..+.
T Consensus        91 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~--~~---~v~~~~g~~~~ad~vV~AdG~~s~  161 (379)
T 3alj_A           91 VSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADP--VG---RLTLQTGEVLEADLIVGADGVGSK  161 (379)
T ss_dssp             EEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEET--TT---EEEETTSCEEECSEEEECCCTTCH
T ss_pred             eeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEe--CC---EEEECCCCEEEcCEEEECCCccHH
Confidence              000           34566777888888999999999999985  33   477888989999999999999864

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=98.44  E-value=2e-06  Score=88.45  Aligned_cols=101  Identities=17%  Similarity=0.179  Sum_probs=81.3

Q ss_pred             CeEEEECCCHHHHHHHHHHH-hCCCcEEEEecCCcCccc--------------------c----------------cCHH
Q 011351          208 KKVVVVGGGYIGMEVAAAAV-GWKLDTTIIFPENHLLQR--------------------L----------------FTPS  250 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~-~~g~~v~lv~~~~~~l~~--------------------~----------------~~~~  250 (488)
                      .+|+|||+|+.|+.+|..|+ +.|.+|+++++.+.+...                    .                ..++
T Consensus         9 ~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~e   88 (540)
T 3gwf_A            9 VDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQPE   88 (540)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEEHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCCCHHH
Confidence            47999999999999999999 999999999986533100                    0                0235


Q ss_pred             HHHHHHHHHHHcCc--EEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecC--ccC
Q 011351          251 LAQRYEQLYQQNGV--KFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA--KPT  308 (488)
Q Consensus       251 ~~~~~~~~l~~~GV--~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~--~p~  308 (488)
                      +.+++.+..++.|+  .++++++|++++.++++....|.+.+|+++.+|.||+|+|.  +|.
T Consensus        89 i~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~  150 (540)
T 3gwf_A           89 ILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAIN  150 (540)
T ss_dssp             HHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBC
T ss_pred             HHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCC
Confidence            67778888888898  89999999999876554455788899999999999999994  554

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.44  E-value=1.4e-06  Score=83.38  Aligned_cols=100  Identities=19%  Similarity=0.281  Sum_probs=79.0

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecC--CcCc--------cc---ccCHHHHHHHHHHHHHcCcEEEcCCeEEE
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE--NHLL--------QR---LFTPSLAQRYEQLYQQNGVKFVKGASIKN  274 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~--~~~l--------~~---~~~~~~~~~~~~~l~~~GV~v~~~~~v~~  274 (488)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++.  ..+.        +.   ....++.+.+.+.+++.|++++. .++++
T Consensus        16 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~   94 (323)
T 3f8d_A           16 FDVIIVGLGPAAYGAALYSARYMLKTLVIGETPGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLL-DIVEK   94 (323)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSTTGGGGGCCEECCSTTSTTEEHHHHHHHHHHHHHTTTCCEEE-SCEEE
T ss_pred             cCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCeecccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEE-EEEEE
Confidence            57999999999999999999999999999985  1111        11   11246777788888889999999 88999


Q ss_pred             EEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCCh
Q 011351          275 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  310 (488)
Q Consensus       275 i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~  310 (488)
                      ++..+ +. ..+.+.+|+++.+|.+|+|+|..|...
T Consensus        95 i~~~~-~~-~~v~~~~g~~~~~d~lvlAtG~~~~~~  128 (323)
T 3f8d_A           95 IENRG-DE-FVVKTKRKGEFKADSVILGIGVKRRKL  128 (323)
T ss_dssp             EEEC---C-EEEEESSSCEEEEEEEEECCCCEECCC
T ss_pred             EEecC-CE-EEEEECCCCEEEcCEEEECcCCCCccC
Confidence            98643 22 357788888999999999999987643

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=98.43  E-value=3.7e-07  Score=89.46  Aligned_cols=35  Identities=14%  Similarity=0.316  Sum_probs=32.2

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      ++||+|||||++|+++|++|++.|.   +|+|||++..
T Consensus         2 ~~dvvIIG~Gi~Gl~~A~~La~~G~---~V~vle~~~~   36 (372)
T 2uzz_A            2 KYDLIIIGSGSVGAAAGYYATRAGL---NVLMTDAHMP   36 (372)
T ss_dssp             CEEEEESCTTHHHHHHHHHHHHTTC---CEEEECSSCS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCC---eEEEEecCCC
Confidence            4799999999999999999999987   8999999764

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=98.43  E-value=1.7e-06  Score=85.64  Aligned_cols=99  Identities=11%  Similarity=0.204  Sum_probs=77.8

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc--------------------cc---------------------
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------------------RL---------------------  246 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~--------------------~~---------------------  246 (488)
                      ..|+|||+|+.|+.+|..+++.|.+|+++++.+.+..                    ..                     
T Consensus         5 ~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   84 (401)
T 2gqf_A            5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDFI   84 (401)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHHHH
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHHHHH
Confidence            4699999999999999999999999999998764310                    00                     


Q ss_pred             ----------------------cCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCC---CCcEEEEEeCCCcEEEcCEEEE
Q 011351          247 ----------------------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS---DGRVAAVKLEDGSTIDADTIVI  301 (488)
Q Consensus       247 ----------------------~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~---~~~v~~v~l~~g~~i~~D~vi~  301 (488)
                                            ....+.+.+.+.+++.||++++++.++++..++   ++.+ .|.+.+| ++.+|.||+
T Consensus        85 ~~~~~~Gi~~~~~~~g~~~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~-~v~~~~g-~i~ad~VVl  162 (401)
T 2gqf_A           85 SLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRF-VLQVNST-QWQCKNLIV  162 (401)
T ss_dssp             HHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCE-EEEETTE-EEEESEEEE
T ss_pred             HHHHhCCCceEECcCCEEccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeE-EEEECCC-EEECCEEEE
Confidence                                  123455667788888999999999999998541   2333 5777776 799999999


Q ss_pred             eecCccC
Q 011351          302 GIGAKPT  308 (488)
Q Consensus       302 a~G~~p~  308 (488)
                      |+|..+.
T Consensus       163 AtG~~s~  169 (401)
T 2gqf_A          163 ATGGLSM  169 (401)
T ss_dssp             CCCCSSC
T ss_pred             CCCCccC
Confidence            9999884

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.42  E-value=1.3e-06  Score=83.17  Aligned_cols=101  Identities=20%  Similarity=0.268  Sum_probs=78.3

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCC--cCc---------c--cccCHHHHHHHHHHHHHcCcEEEcCCeEEEE
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN--HLL---------Q--RLFTPSLAQRYEQLYQQNGVKFVKGASIKNL  275 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~--~~l---------~--~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i  275 (488)
                      +++|||+|+.|+.+|..|++.|.+|+++++..  .+.         .  ....+.+.+.+.+.+++.|++++.+++++.+
T Consensus         3 dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i   82 (310)
T 1fl2_A            3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKL   82 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEE
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCceeccccccccccCcCCCCHHHHHHHHHHHHHHcCCeEEccCEEEEE
Confidence            58999999999999999999999999997531  111         0  0112467778888888899999999999999


Q ss_pred             EeCCC-CcEEEEEeCCCcEEEcCEEEEeecCccCC
Q 011351          276 EAGSD-GRVAAVKLEDGSTIDADTIVIGIGAKPTV  309 (488)
Q Consensus       276 ~~~~~-~~v~~v~l~~g~~i~~D~vi~a~G~~p~~  309 (488)
                      +...+ +....+.+++|+++.+|.+|+|+|..|..
T Consensus        83 ~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~  117 (310)
T 1fl2_A           83 IPAAVEGGLHQIETASGAVLKARSIIVATGAKWRN  117 (310)
T ss_dssp             ECCSSTTCCEEEEETTSCEEEEEEEEECCCEEECC
T ss_pred             EecccCCceEEEEECCCCEEEeCEEEECcCCCcCC
Confidence            75322 22246778888889999999999998754

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=98.39  E-value=4.3e-07  Score=90.14  Aligned_cols=35  Identities=23%  Similarity=0.400  Sum_probs=32.2

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   89 (488)
                      .+|+|||||++|+++|..|+++|+   +|+|+|+.+..
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~---~v~v~Er~~~~   36 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGI---KVTIYERNSAA   36 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSCSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC---CEEEEecCCCC
Confidence            589999999999999999999998   89999997654

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=98.39  E-value=4.6e-07  Score=90.75  Aligned_cols=96  Identities=24%  Similarity=0.350  Sum_probs=72.3

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCcCcccccCHH----------HHHHHHHHHHHcCcEEEcCCeEEEE
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQRLFTPS----------LAQRYEQLYQQNGVKFVKGASIKNL  275 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g--~~v~lv~~~~~~l~~~~~~~----------~~~~~~~~l~~~GV~v~~~~~v~~i  275 (488)
                      |+|+|||+|+.|+.+|..|++++  .+||+|++.+.+.....-+.          +...+.+.+++.||+++.+ ++++|
T Consensus         3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~l~~v~~g~~~~~~i~~~~~~~~~~~gv~~i~~-~v~~I   81 (430)
T 3hyw_A            3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINE-KAESI   81 (430)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGGGGTEEEECS-CEEEE
T ss_pred             CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCccHHHHhcCCCCHHHhhhcHHHHHHHCCcEEEEe-EEEEE
Confidence            68999999999999999999865  68999999876432111111          1112335567789999877 69999


Q ss_pred             EeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351          276 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  308 (488)
Q Consensus       276 ~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~  308 (488)
                      +.+ ..   .|.+++|+++++|.+|+|||.++.
T Consensus        82 d~~-~~---~V~~~~g~~i~YD~LViAtG~~~~  110 (430)
T 3hyw_A           82 DPD-AN---TVTTQSGKKIEYDYLVIATGPKLV  110 (430)
T ss_dssp             ETT-TT---EEEETTCCEEECSEEEECCCCEEE
T ss_pred             ECC-CC---EEEECCCCEEECCEEEEeCCCCcc
Confidence            853 22   578899999999999999998753

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.39  E-value=5.5e-07  Score=89.51  Aligned_cols=96  Identities=20%  Similarity=0.332  Sum_probs=74.8

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (488)
                      .++|+|||||+.|+.+|..|++.|.   +|+++++.+...-      . .+      ...+           .....+.+
T Consensus       145 ~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l~------~-~~------~~~~-----------~~~l~~~l  197 (408)
T 2gqw_A          145 QSRLLIVGGGVIGLELAATARTAGV---HVSLVETQPRLMS------R-AA------PATL-----------ADFVARYH  197 (408)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSSST------T-TS------CHHH-----------HHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC---EEEEEEeCCcccc------c-cc------CHHH-----------HHHHHHHH
Confidence            5799999999999999999999986   8999998764210      0 00      0000           01235667


Q ss_pred             HHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCC
Q 011351          131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS  175 (488)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~  175 (488)
                      ++.|++++.++.|.+++ ++ .|++.+|+++.+|.+|+|+|..|.
T Consensus       198 ~~~GV~i~~~~~v~~i~-~~-~v~~~~g~~i~~D~vi~a~G~~p~  240 (408)
T 2gqw_A          198 AAQGVDLRFERSVTGSV-DG-VVLLDDGTRIAADMVVVGIGVLAN  240 (408)
T ss_dssp             HHTTCEEEESCCEEEEE-TT-EEEETTSCEEECSEEEECSCEEEC
T ss_pred             HHcCcEEEeCCEEEEEE-CC-EEEECCCCEEEcCEEEECcCCCcc
Confidence            88999999999999998 44 888899999999999999998764

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=98.38  E-value=1.6e-06  Score=89.87  Aligned_cols=141  Identities=15%  Similarity=0.171  Sum_probs=92.8

Q ss_pred             eccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhh----cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc
Q 011351          168 VATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE----KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL  243 (488)
Q Consensus       168 lAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~----~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l  243 (488)
                      .++.+........|....++....+...+...+...+.    ..-.|+|||+|..|+.+|..|++.|.+|+++++.+.+.
T Consensus        78 ~c~~ch~~~~~~~p~~~~~~~~~w~~~~~~~~i~~~i~~~~~~~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~g  157 (566)
T 1qo8_A           78 YCNECHSFDIKPMPFSDAKKKKSWDDGWDQDKIQKAIAAGPSETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSG  157 (566)
T ss_dssp             GGGGTCCCCCCCCTTTTSCCCCCSCCCCCHHHHHHHHHTCCSEEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSC
T ss_pred             hhhhhcCCCcCCCCCCCCCCCcccccccccHHHHHhhccCCCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence            45565554322334444444443333223333322222    22369999999999999999999999999999875321


Q ss_pred             cc------------------------------------------------------------------------------
Q 011351          244 QR------------------------------------------------------------------------------  245 (488)
Q Consensus       244 ~~------------------------------------------------------------------------------  245 (488)
                      ..                                                                              
T Consensus       158 g~s~~s~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~  237 (566)
T 1qo8_A          158 GNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQNDIKLVTILAEQSADGVQWLESLGANLDDLKRSGGARVD  237 (566)
T ss_dssp             TTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSC
T ss_pred             CcccccCceeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHhccHHHHHHHHhcCCccccccccCCCCCC
Confidence            10                                                                              


Q ss_pred             -c--------cCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC--CCc--EEEcCEEEEeecCccC
Q 011351          246 -L--------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--DGS--TIDADTIVIGIGAKPT  308 (488)
Q Consensus       246 -~--------~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~--~g~--~i~~D~vi~a~G~~p~  308 (488)
                       .        ....+...+.+.+++.||++++++.++++..++++++.+|.+.  +|+  ++.+|.||+|+|....
T Consensus       238 r~~~~~~~~~~~~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s~  313 (566)
T 1qo8_A          238 RTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGM  313 (566)
T ss_dssp             CEEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCTT
T ss_pred             ceeecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEECCCCcEEEEEEEeCCCcEEEEEcCEEEEecCCccc
Confidence             0        0122445566777888999999999999986543777777665  675  6899999999997553

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.38  E-value=3.3e-07  Score=94.70  Aligned_cols=161  Identities=13%  Similarity=0.147  Sum_probs=90.0

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC-CCCCCCCCCccc------------cCCC-----------
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY-APYERPALTKGY------------LFPL-----------  104 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~-~~~~~~~l~~~~------------~~~~-----------  104 (488)
                      ..++||+|||||+||++||..|++.|.   +|+|||+.+. .....+..+.+.            +...           
T Consensus        19 ~~~yDVIVIGgG~AGl~AAlaLAr~G~---kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~gi~   95 (641)
T 3cp8_A           19 SHMYDVIVVGAGHAGCEAALAVARGGL---HCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDATGIQ   95 (641)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHEEE
T ss_pred             cCcCCEEEECccHHHHHHHHHHHHCCC---cEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHhcCCc
Confidence            456899999999999999999999987   8999998742 111101000000            0000           


Q ss_pred             -CCCC-CCCCCccc---ccC-CCCCCCCHhHHHH-CCCeEEeCCcEEEEeCCCcE---EEeCCCcEEEeccEEeccCCCC
Q 011351          105 -DKKP-ARLPGFHT---CVG-SGGERQTPEWYKE-KGIEMIYQDPVTSIDIEKQT---LITNSGKLLKYGSLIVATGCTA  174 (488)
Q Consensus       105 -~~~~-~~~~~~~~---~~~-~~~~~~~~~~~~~-~~i~~~~~~~v~~id~~~~~---v~~~~g~~i~yd~lVlAtG~~~  174 (488)
                       .... ..-+....   ... ..+.....+.+++ .+++++. .+|+.+..++..   |.+.+|..+.+|.||+|||..+
T Consensus        96 f~~l~~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~-~~V~~L~~d~g~V~GV~t~~G~~i~Ad~VVLATG~~s  174 (641)
T 3cp8_A           96 FRMLNRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQ-DTVIGVSANSGKFSSVTVRSGRAIQAKAAILACGTFL  174 (641)
T ss_dssp             EEEECSSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEEE-CCEEEEEEETTEEEEEEETTSCEEEEEEEEECCTTCB
T ss_pred             hhhcccccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEEe-eEEEEEEecCCEEEEEEECCCcEEEeCEEEECcCCCC
Confidence             0000 00000000   000 0000111233444 4899865 589988765543   6677888899999999999875


Q ss_pred             CcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEE
Q 011351          175 SRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTII  236 (488)
Q Consensus       175 ~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv  236 (488)
                      .... .+     +...+.              +.+++   |+..+++++..|.+.|.++..+
T Consensus       175 ~~~i-~~-----G~~~~~--------------~g~~v---G~~~a~~la~~L~~~G~kv~~l  213 (641)
T 3cp8_A          175 NGLI-HI-----GMDHFP--------------GGRST---AEPPVEGLTESLASLGFSFGRL  213 (641)
T ss_dssp             TCEE-EE-----TTEEEE--------------CSSST---TSCCBCSHHHHHHHTTCCEEEE
T ss_pred             Cccc-ee-----eeeeec--------------ccccc---CCchhhhhHHHHHhCCceEEee
Confidence            4211 11     111110              11111   3567788888888888887644

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.37  E-value=1.9e-06  Score=81.24  Aligned_cols=99  Identities=12%  Similarity=0.257  Sum_probs=76.3

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc---------cc---ccCHHHHHHHHHHHHHc-CcEEEcCCeEEE
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL---------QR---LFTPSLAQRYEQLYQQN-GVKFVKGASIKN  274 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l---------~~---~~~~~~~~~~~~~l~~~-GV~v~~~~~v~~  274 (488)
                      .+++|||+|+.|+.+|..|++.|.+|+++++.+...         +.   ....++...+.+.+++. +++++.+ +++.
T Consensus         3 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~   81 (297)
T 3fbs_A            3 FDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHSHGFLGQDGKAPGEIIAEARRQIERYPTIHWVEG-RVTD   81 (297)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGCSCCCSSTTCTTCCHHHHHHHHHHHHTTCTTEEEEES-CEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccchhhcCCcCCCCCCHHHHHHHHHHHHHhcCCeEEEEe-EEEE
Confidence            479999999999999999999999999999753211         00   11235667777777776 7888765 8999


Q ss_pred             EEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCC
Q 011351          275 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  309 (488)
Q Consensus       275 i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~  309 (488)
                      ++..+++  ..+.+.+|+++.+|.+|+|+|..|..
T Consensus        82 i~~~~~~--~~v~~~~g~~~~~d~vviAtG~~~~~  114 (297)
T 3fbs_A           82 AKGSFGE--FIVEIDGGRRETAGRLILAMGVTDEL  114 (297)
T ss_dssp             EEEETTE--EEEEETTSCEEEEEEEEECCCCEEEC
T ss_pred             EEEcCCe--EEEEECCCCEEEcCEEEECCCCCCCC
Confidence            9865332  36788899899999999999998754

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.36  E-value=2.5e-06  Score=81.24  Aligned_cols=98  Identities=16%  Similarity=0.320  Sum_probs=76.4

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCc---C--------ccc---cc-CHHHHHHHHHHHHHcCcEEEcCCeE
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENH---L--------LQR---LF-TPSLAQRYEQLYQQNGVKFVKGASI  272 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~-~v~lv~~~~~---~--------l~~---~~-~~~~~~~~~~~l~~~GV~v~~~~~v  272 (488)
                      +++|||+|+.|+.+|..|++.|. +|+++++...   +        .+.   .. ...+.+.+.+.+++.|++++. .++
T Consensus         3 dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~-~~v   81 (311)
T 2q0l_A            3 DCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGGQITGSSEIENYPGVKEVVSGLDFMQPWQEQCFRFGLKHEM-TAV   81 (311)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSSEEEECSSSTTCGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHHTTSCEEEC-SCE
T ss_pred             eEEEECccHHHHHHHHHHHHCCCCcEEEEcCCCCCcccccccccccCCCCcccCCHHHHHHHHHHHHHHcCCEEEE-EEE
Confidence            68999999999999999999999 9999997521   0        111   11 245677778888889999998 688


Q ss_pred             EEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCC
Q 011351          273 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  309 (488)
Q Consensus       273 ~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~  309 (488)
                      +.++..+ +. ..+.+.+|+++.+|.+|+|+|..|..
T Consensus        82 ~~i~~~~-~~-~~v~~~~g~~~~~~~vv~AtG~~~~~  116 (311)
T 2q0l_A           82 QRVSKKD-SH-FVILAEDGKTFEAKSVIIATGGSPKR  116 (311)
T ss_dssp             EEEEEET-TE-EEEEETTSCEEEEEEEEECCCEEECC
T ss_pred             EEEEEcC-CE-EEEEEcCCCEEECCEEEECCCCCCCC
Confidence            8887543 32 24667888899999999999988764

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.35  E-value=7.3e-07  Score=87.88  Aligned_cols=98  Identities=13%  Similarity=0.174  Sum_probs=74.6

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (488)
                      .++++|||||+.|+.+|..|++.|.   +|+++++.+...-.       .+      +..+           .....+.+
T Consensus       145 ~~~v~ViGgG~~g~e~A~~l~~~g~---~Vtlv~~~~~~~~~-------~~------~~~~-----------~~~l~~~l  197 (384)
T 2v3a_A          145 KRRVLLLGAGLIGCEFANDLSSGGY---QLDVVAPCEQVMPG-------LL------HPAA-----------AKAVQAGL  197 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSSSTT-------TS------CHHH-----------HHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC---eEEEEecCcchhhc-------cc------CHHH-----------HHHHHHHH
Confidence            6899999999999999999999986   89999987542100       00      0000           01234566


Q ss_pred             HHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCCC
Q 011351          131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  175 (488)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~~  175 (488)
                      ++.|++++.+++|.+++.+..  .+++.+|+++.+|.+|+|+|..|.
T Consensus       198 ~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vv~a~G~~p~  244 (384)
T 2v3a_A          198 EGLGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVGLRPR  244 (384)
T ss_dssp             HTTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEEC
T ss_pred             HHcCCEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEECcCCCcC
Confidence            778999999999999976543  577788988999999999998765

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.35  E-value=2.9e-06  Score=81.40  Aligned_cols=100  Identities=22%  Similarity=0.269  Sum_probs=76.7

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc---C--------ccc----ccCHHHHHHHHHHHHHcCcEEEcCCeE
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH---L--------LQR----LFTPSLAQRYEQLYQQNGVKFVKGASI  272 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~---~--------l~~----~~~~~~~~~~~~~l~~~GV~v~~~~~v  272 (488)
                      .+++|||+|+.|+.+|..|++.|.+|+++++...   +        .+.    ....++.+.+.+.+++.|++++. .++
T Consensus         9 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v   87 (325)
T 2q7v_A            9 YDVVIIGGGPAGLTAAIYTGRAQLSTLILEKGMPGGQIAWSEEVENFPGFPEPIAGMELAQRMHQQAEKFGAKVEM-DEV   87 (325)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGGGGGCSCBCCSTTCSSCBCHHHHHHHHHHHHHHTTCEEEE-CCE
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCcEEEEeCCCCCcccccccccccCCCCCCCCCHHHHHHHHHHHHHHcCCEEEe-eeE
Confidence            5799999999999999999999999999998721   0        111    01235677778888899999998 578


Q ss_pred             EEEEeC--CCCcEEEEEeCCCcEEEcCEEEEeecCccCC
Q 011351          273 KNLEAG--SDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  309 (488)
Q Consensus       273 ~~i~~~--~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~  309 (488)
                      ..++..  ++. ...+.+.+|+++.+|.+|+|+|..|..
T Consensus        88 ~~i~~~~~~~~-~~~v~~~~g~~~~~~~vv~AtG~~~~~  125 (325)
T 2q7v_A           88 QGVQHDATSHP-YPFTVRGYNGEYRAKAVILATGADPRK  125 (325)
T ss_dssp             EEEEECTTSSS-CCEEEEESSCEEEEEEEEECCCEEECC
T ss_pred             EEEEeccCCCc-eEEEEECCCCEEEeCEEEECcCCCcCC
Confidence            888764  222 124566788899999999999998764

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.34  E-value=3.4e-06  Score=85.25  Aligned_cols=103  Identities=17%  Similarity=0.241  Sum_probs=76.8

Q ss_pred             CeEEEECCCHHHHHHHHHHHh---CCCc---EEEEecCCcCcccc-----------------------------------
Q 011351          208 KKVVVVGGGYIGMEVAAAAVG---WKLD---TTIIFPENHLLQRL-----------------------------------  246 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~---~g~~---v~lv~~~~~~l~~~-----------------------------------  246 (488)
                      ++|+|||+|+.|+.+|..|++   .|.+   |+++++.+.+-...                                   
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~~   82 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFA   82 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCBT
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcccC
Confidence            579999999999999999999   9999   99999875421000                                   


Q ss_pred             -c---------------CHHHHHHHHHHHHHcCcE--EEcCCeEEEEEeCCCCcEEEEEeCC---C--cEEEcCEEEEee
Q 011351          247 -F---------------TPSLAQRYEQLYQQNGVK--FVKGASIKNLEAGSDGRVAAVKLED---G--STIDADTIVIGI  303 (488)
Q Consensus       247 -~---------------~~~~~~~~~~~l~~~GV~--v~~~~~v~~i~~~~~~~v~~v~l~~---g--~~i~~D~vi~a~  303 (488)
                       +               ...+.+++.+.+++.|++  ++++++|+.++..+++....|.+.+   |  +++.+|.||+|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVvAt  162 (464)
T 2xve_A           83 DYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCT  162 (464)
T ss_dssp             TBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECC
T ss_pred             CCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEECC
Confidence             0               134566777777888998  9999999999865432122455543   4  568999999999


Q ss_pred             c--CccCCh
Q 011351          304 G--AKPTVS  310 (488)
Q Consensus       304 G--~~p~~~  310 (488)
                      |  ..|...
T Consensus       163 G~~s~p~~p  171 (464)
T 2xve_A          163 GHFSTPYVP  171 (464)
T ss_dssp             CSSSSBCCC
T ss_pred             CCCCCCccC
Confidence            9  677643

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.34  E-value=5.6e-07  Score=90.99  Aligned_cols=99  Identities=21%  Similarity=0.277  Sum_probs=75.8

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      ..++++|||||+.|+.+|..|++.|.   +|+++++.+...   +.+..           .+           .....+.
T Consensus       165 ~~~~vvVvGgG~~g~e~A~~l~~~G~---~Vtlv~~~~~~l---~~~~~-----------~~-----------~~~l~~~  216 (463)
T 2r9z_A          165 QPKRVAIIGAGYIGIELAGLLRSFGS---EVTVVALEDRLL---FQFDP-----------LL-----------SATLAEN  216 (463)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSS---TTSCH-----------HH-----------HHHHHHH
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhcCC---EEEEEEcCCccc---cccCH-----------HH-----------HHHHHHH
Confidence            35799999999999999999999986   899999875421   00000           00           0123566


Q ss_pred             HHHCCCeEEeCCcEEEEeCCC--cEEEeCCCc-EEEeccEEeccCCCCCc
Q 011351          130 YKEKGIEMIYQDPVTSIDIEK--QTLITNSGK-LLKYGSLIVATGCTASR  176 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~--~~v~~~~g~-~i~yd~lVlAtG~~~~~  176 (488)
                      +++.+++++.++.|.+++.+.  ..+++.+|+ ++.+|.+|+|+|..|..
T Consensus       217 l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~  266 (463)
T 2r9z_A          217 MHAQGIETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNT  266 (463)
T ss_dssp             HHHTTCEEESSCCEEEEEEETTEEEEEETTCCEEEEESEEEECSCEEESC
T ss_pred             HHHCCCEEEeCCEEEEEEEeCCeEEEEEeCCcEEEEcCEEEECCCCCcCC
Confidence            788999999999999998643  467788898 89999999999987753

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=98.34  E-value=4.1e-06  Score=84.19  Aligned_cols=99  Identities=25%  Similarity=0.437  Sum_probs=79.5

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc------------------------------------------
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------------  245 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~------------------------------------------  245 (488)
                      ..|+|||+|..|+-+|..|++.|.+|+++++.+.+...                                          
T Consensus        27 ~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (447)
T 2i0z_A           27 YDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNNED  106 (447)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCHHH
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHHhcCHHH
Confidence            46999999999999999999999999999987532100                                          


Q ss_pred             -------------------cc-----CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEE
Q 011351          246 -------------------LF-----TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI  301 (488)
Q Consensus       246 -------------------~~-----~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~  301 (488)
                                         .+     ...+.+.+.+.+++.||+++++++|+++..+ ++.+..|.+.+|+++.+|.||+
T Consensus       107 ~~~~~~~~G~~~~~~~~g~~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~-~~~v~~V~~~~G~~i~Ad~VVl  185 (447)
T 2i0z_A          107 IITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYE-NGQTKAVILQTGEVLETNHVVI  185 (447)
T ss_dssp             HHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETTCCEEECSCEEE
T ss_pred             HHHHHHhcCCceEEeeCCEEECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEec-CCcEEEEEECCCCEEECCEEEE
Confidence                               00     0234456667778899999999999999864 5666678889998899999999


Q ss_pred             eecCcc
Q 011351          302 GIGAKP  307 (488)
Q Consensus       302 a~G~~p  307 (488)
                      |+|..+
T Consensus       186 AtGg~s  191 (447)
T 2i0z_A          186 AVGGKS  191 (447)
T ss_dssp             CCCCSS
T ss_pred             CCCCCc
Confidence            999876

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.33  E-value=5.8e-07  Score=90.54  Aligned_cols=98  Identities=14%  Similarity=0.120  Sum_probs=75.5

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      ..++++|||||+.|+.+|..|++.|.   +|+|+++.+...   +.+..           .+           .....+.
T Consensus       166 ~~~~vvViGgG~~g~e~A~~l~~~g~---~Vtlv~~~~~~l---~~~~~-----------~~-----------~~~l~~~  217 (450)
T 1ges_A          166 LPERVAVVGAGYIGVELGGVINGLGA---KTHLFEMFDAPL---PSFDP-----------MI-----------SETLVEV  217 (450)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSS---TTSCH-----------HH-----------HHHHHHH
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhcCC---EEEEEEeCCchh---hhhhH-----------HH-----------HHHHHHH
Confidence            35799999999999999999999986   899999875421   00000           00           1123566


Q ss_pred             HHHCCCeEEeCCcEEEEeCCC---cEEEeCCCcEEEeccEEeccCCCCC
Q 011351          130 YKEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGSLIVATGCTAS  175 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~---~~v~~~~g~~i~yd~lVlAtG~~~~  175 (488)
                      +++.|++++.+++|.+++.+.   ..+++.+|+++.+|.+|+|+|..|.
T Consensus       218 l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~~p~  266 (450)
T 1ges_A          218 MNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGREPA  266 (450)
T ss_dssp             HHHHSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEES
T ss_pred             HHHCCCEEEeCCEEEEEEEeCCcEEEEEECCCcEEEcCEEEECCCCCcC
Confidence            778899999999999998653   3678888988999999999998765

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=98.33  E-value=5.3e-06  Score=81.60  Aligned_cols=98  Identities=20%  Similarity=0.296  Sum_probs=72.0

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc-------------------------------------------
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-------------------------------------------  245 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~-------------------------------------------  245 (488)
                      .|+|||+|+.|+-+|..|++.|.+|+++++.+.+-..                                           
T Consensus         6 DViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~~~~g~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (397)
T 3oz2_A            6 DVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRSFIANEVKGARIYGPSEKRPII   85 (397)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSCCSCCEEETHHHHHTTCCCCTTTEEEEESEEEEECTTCSSCEE
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCceecccCHHHHHHcCCCchhhhhhcccceEEEEeCCCceEee
Confidence            4899999999999999999999999999986432100                                           


Q ss_pred             ------------ccC-HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe-CCC--cEEEcCEEEEeecCcc
Q 011351          246 ------------LFT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL-EDG--STIDADTIVIGIGAKP  307 (488)
Q Consensus       246 ------------~~~-~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l-~~g--~~i~~D~vi~a~G~~p  307 (488)
                                  .++ ..+...+.+..++.|++++.+++++.+..+ ++.+..+.. .++  .++.+|+||-|.|...
T Consensus        86 ~~~~~~~~~~~~~i~R~~~~~~L~~~a~~~G~~~~~~~~v~~~~~~-~~~~~~v~~~~~~~~~~~~a~~vIgAdG~~S  162 (397)
T 3oz2_A           86 LQSEKAGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIKE-NGKVAGAKIRHNNEIVDVRAKMVIAADGFES  162 (397)
T ss_dssp             EECSSSSCCCEEEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEEE-TTEEEEEEEEETTEEEEEEEEEEEECCCTTC
T ss_pred             ccccccCCceeEEEEHHHHHHHHHHHHHhcCcEEeeeeeeeeeeec-cceeeeeeecccccceEEEEeEEEeCCcccc
Confidence                        000 234556667778889999999999998764 455444433 233  3689999999999643

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.33  E-value=1.6e-06  Score=89.20  Aligned_cols=101  Identities=13%  Similarity=0.139  Sum_probs=80.0

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc----------------------------------cc--cCHHH
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------------------RL--FTPSL  251 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~----------------------------------~~--~~~~~  251 (488)
                      .+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+-.                                  ..  -.+++
T Consensus        10 ~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~~~ei   89 (545)
T 3uox_A           10 LDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQPEM   89 (545)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCBHHHH
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCCCHHHH
Confidence            4799999999999999999999999999998754310                                  00  12467


Q ss_pred             HHHHHHHHHHcCc--EEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeec--CccC
Q 011351          252 AQRYEQLYQQNGV--KFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG--AKPT  308 (488)
Q Consensus       252 ~~~~~~~l~~~GV--~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G--~~p~  308 (488)
                      ..++.+..++.|+  .++++++|++++.+++.....|.+.+|+++.||.||+|+|  .+|.
T Consensus        90 ~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~  150 (545)
T 3uox_A           90 LRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASR  150 (545)
T ss_dssp             HHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC--
T ss_pred             HHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCc
Confidence            7788888888888  7899999999986544444578889999999999999999  5554

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=98.33  E-value=7.2e-07  Score=88.42  Aligned_cols=100  Identities=22%  Similarity=0.283  Sum_probs=73.4

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCcCcccccCHHHH---------HHHHHHHHHcCcEEEcCCeEEEE
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQRLFTPSLA---------QRYEQLYQQNGVKFVKGASIKNL  275 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g--~~v~lv~~~~~~l~~~~~~~~~---------~~~~~~l~~~GV~v~~~~~v~~i  275 (488)
                      +|+|+|||+|+.|+.+|..|++.+  .+|++|++.+......+...+.         ..-.+.+.+.||+++.+ +++.|
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~v~~g~~~~~~~~~~~~~~~~~gv~~i~~-~v~~i   80 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEVIGGDRELASLRVGYDGLRAHGIQVVHD-SALGI   80 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHHHHHHTSSCGGGGEECSHHHHHTTCEEECS-CEEEE
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHHHHhcCCCCHHHHhhCHHHHHHCCCEEEEe-EEEEE
Confidence            789999999999999999998765  5899999887533221111110         01123456789999876 68899


Q ss_pred             EeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChh
Q 011351          276 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP  311 (488)
Q Consensus       276 ~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~  311 (488)
                      +.+  .+  .+.+.+|+++.+|.+|+|+|.+++...
T Consensus        81 d~~--~~--~v~~~~g~~i~yd~LviAtG~~~~~~~  112 (401)
T 3vrd_B           81 DPD--KK--LVKTAGGAEFAYDRCVVAPGIDLLYDK  112 (401)
T ss_dssp             ETT--TT--EEEETTSCEEECSEEEECCCEEECGGG
T ss_pred             Ecc--Cc--EEEecccceeecceeeeccCCccccCC
Confidence            853  22  478899999999999999999887543

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=98.32  E-value=1.7e-06  Score=85.63  Aligned_cols=35  Identities=26%  Similarity=0.522  Sum_probs=32.2

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      ++||+|||||++|+++|+.|+++|.   +|+|||+.+.
T Consensus         4 ~~DVvIIGaG~~Gl~~A~~La~~G~---~V~vlE~~~~   38 (397)
T 2oln_A            4 SYDVVVVGGGPVGLATAWQVAERGH---RVLVLERHTF   38 (397)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCC---eEEEEeCCCC
Confidence            4799999999999999999999987   8999999764

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=98.32  E-value=4.1e-07  Score=84.70  Aligned_cols=37  Identities=22%  Similarity=0.261  Sum_probs=33.3

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   89 (488)
                      |+.||+|||||||||+||..|+++|+   +|+|+|+.+..
T Consensus         1 Mt~dV~IIGaGpaGL~aA~~La~~G~---~V~v~Ek~~~~   37 (336)
T 3kkj_A            1 MTVPIAIIGTGIAGLSAAQALTAAGH---QVHLFDKSRGS   37 (336)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCC---CEEEEECCCCC
Confidence            35799999999999999999999998   89999998754

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=98.32  E-value=4.7e-07  Score=90.07  Aligned_cols=98  Identities=21%  Similarity=0.337  Sum_probs=74.4

Q ss_pred             CeEEEECCCHHHHHHHHHHHh---CCCcEEEEecCCcCcccc----------cCHHHHHHHHHHHHHcCcEEEcCCeEEE
Q 011351          208 KKVVVVGGGYIGMEVAAAAVG---WKLDTTIIFPENHLLQRL----------FTPSLAQRYEQLYQQNGVKFVKGASIKN  274 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~---~g~~v~lv~~~~~~l~~~----------~~~~~~~~~~~~l~~~GV~v~~~~~v~~  274 (488)
                      ++|+|||+|+.|+.+|..|++   .+.+|+++++.+.+....          ...++...+.+.+++.|++++.+ +++.
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~   80 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEALPEKGIQFQEG-TVEK   80 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSSCCCCSSCCCCCCEEEEHHHHTGGGTCEEEEC-EEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccchhhcccCCcCHHHHHHHHHHHHhhCCeEEEEe-eEEE
Confidence            579999999999999999999   899999999887542210          11223344666777889999988 8999


Q ss_pred             EEeCCCCcEEEEEeCCCc----EEEcCEEEEeecCccCCh
Q 011351          275 LEAGSDGRVAAVKLEDGS----TIDADTIVIGIGAKPTVS  310 (488)
Q Consensus       275 i~~~~~~~v~~v~l~~g~----~i~~D~vi~a~G~~p~~~  310 (488)
                      ++.+ +.   .|.+.+++    ++.+|.+|+|+|.+|+..
T Consensus        81 i~~~-~~---~V~~~~g~~~~~~~~~d~lViAtG~~~~~~  116 (409)
T 3h8l_A           81 IDAK-SS---MVYYTKPDGSMAEEEYDYVIVGIGAHLATE  116 (409)
T ss_dssp             EETT-TT---EEEEECTTSCEEEEECSEEEECCCCEECGG
T ss_pred             EeCC-CC---EEEEccCCcccceeeCCEEEECCCCCcCcc
Confidence            9853 22   35555665    399999999999988754

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.31  E-value=4.6e-07  Score=91.52  Aligned_cols=97  Identities=22%  Similarity=0.308  Sum_probs=72.6

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      ..++++|||||++|+.+|..|++.|.   +|+|+++.+...   |.+.           ..+           .....+.
T Consensus       170 ~~~~vvViGgG~~g~e~A~~l~~~g~---~Vtlv~~~~~~l---~~~~-----------~~~-----------~~~l~~~  221 (458)
T 1lvl_A          170 LPQHLVVVGGGYIGLELGIAYRKLGA---QVSVVEARERIL---PTYD-----------SEL-----------TAPVAES  221 (458)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHHTC---EEEEECSSSSSS---TTSC-----------HHH-----------HHHHHHH
T ss_pred             cCCeEEEECcCHHHHHHHHHHHHCCC---eEEEEEcCCccc---cccC-----------HHH-----------HHHHHHH
Confidence            35799999999999999999999987   899999876521   0000           000           0123456


Q ss_pred             HHHCCCeEEeCCcEEEEeCCCcEEEeC--CC--cEEEeccEEeccCCCCCc
Q 011351          130 YKEKGIEMIYQDPVTSIDIEKQTLITN--SG--KLLKYGSLIVATGCTASR  176 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~~v~~~--~g--~~i~yd~lVlAtG~~~~~  176 (488)
                      +++.|++++.+++|.+++. ++ +.+.  +|  +++.+|.||+|+|..|..
T Consensus       222 l~~~gv~i~~~~~v~~i~~-~~-v~v~~~~G~~~~i~~D~vv~a~G~~p~~  270 (458)
T 1lvl_A          222 LKKLGIALHLGHSVEGYEN-GC-LLANDGKGGQLRLEADRVLVAVGRRPRT  270 (458)
T ss_dssp             HHHHTCEEETTCEEEEEET-TE-EEEECSSSCCCEECCSCEEECCCEEECC
T ss_pred             HHHCCCEEEECCEEEEEEe-CC-EEEEECCCceEEEECCEEEECcCCCcCC
Confidence            7788999999999999987 44 4433  56  579999999999988753

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.31  E-value=2.5e-06  Score=82.04  Aligned_cols=98  Identities=16%  Similarity=0.237  Sum_probs=75.8

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEec----CCcCc------------cc----ccCHHHHHHHHHHHHHcCcEEE
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFP----ENHLL------------QR----LFTPSLAQRYEQLYQQNGVKFV  267 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~----~~~~l------------~~----~~~~~~~~~~~~~l~~~GV~v~  267 (488)
                      .+++|||+|+.|+.+|..|++.|.+|+++++    ...+-            +.    ....++...+.+.+++.|++++
T Consensus         9 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~   88 (333)
T 1vdc_A            9 TRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTIF   88 (333)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeeeccccccCCCCccCCCHHHHHHHHHHHHHHCCCEEE
Confidence            5799999999999999999999999999997    21110            00    1124667777888889999999


Q ss_pred             cCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCC
Q 011351          268 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  309 (488)
Q Consensus       268 ~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~  309 (488)
                      .++ +..++..+ +.+ .|.+ +|+++.+|.+|+|+|..|..
T Consensus        89 ~~~-v~~i~~~~-~~~-~v~~-~~~~~~~~~vv~A~G~~~~~  126 (333)
T 1vdc_A           89 TET-VTKVDFSS-KPF-KLFT-DSKAILADAVILAIGAVAKR  126 (333)
T ss_dssp             CCC-CCEEECSS-SSE-EEEC-SSEEEEEEEEEECCCEEECC
T ss_pred             EeE-EEEEEEcC-CEE-EEEE-CCcEEEcCEEEECCCCCcCC
Confidence            986 88887543 332 4556 77889999999999998764

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=98.31  E-value=1.2e-06  Score=89.76  Aligned_cols=37  Identities=16%  Similarity=0.149  Sum_probs=33.4

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   89 (488)
                      ..+||||||||+||++||..|++.|.   +|+||||.+..
T Consensus        40 ~~~DVvVVGaG~AGl~AA~~aa~~G~---~V~vlEk~~~~   76 (510)
T 4at0_A           40 YEADVVVAGYGIAGVAASIEAARAGA---DVLVLERTSGW   76 (510)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCC---cEEEEeCCCCC
Confidence            45799999999999999999999987   89999998753

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.31  E-value=6.2e-07  Score=90.70  Aligned_cols=98  Identities=12%  Similarity=0.210  Sum_probs=73.5

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      ..++++|||||+.|+.+|..|++.|.   +|+|+++.+...   +...           ..+           .....+.
T Consensus       168 ~~~~vvViGgG~~g~e~A~~l~~~g~---~Vtlv~~~~~~l---~~~~-----------~~~-----------~~~l~~~  219 (464)
T 2eq6_A          168 LPKRLLVIGGGAVGLELGQVYRRLGA---EVTLIEYMPEIL---PQGD-----------PET-----------AALLRRA  219 (464)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSS---TTSC-----------HHH-----------HHHHHHH
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHCCC---eEEEEEcCCccc---cccC-----------HHH-----------HHHHHHH
Confidence            35799999999999999999999886   899999875421   0000           000           0123566


Q ss_pred             HHHCCCeEEeCCcEEEEeCCCc--EEEeC-C--Cc--EEEeccEEeccCCCCC
Q 011351          130 YKEKGIEMIYQDPVTSIDIEKQ--TLITN-S--GK--LLKYGSLIVATGCTAS  175 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~-~--g~--~i~yd~lVlAtG~~~~  175 (488)
                      +++.|++++.+++|++++.++.  .+++. +  |+  ++.+|.||+|+|..|.
T Consensus       220 l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~  272 (464)
T 2eq6_A          220 LEKEGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPR  272 (464)
T ss_dssp             HHHTTCEEECSEEEEEEEEETTEEEEEEEETTCCSCEEEEESEEEECSCEEES
T ss_pred             HHhcCCEEEcCCEEEEEEEeCCEEEEEEeecCCCceeEEEcCEEEECCCcccC
Confidence            7888999999999999986553  45554 5  76  7999999999998765

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.30  E-value=1.4e-06  Score=87.25  Aligned_cols=95  Identities=15%  Similarity=0.274  Sum_probs=75.2

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (488)
                      .++++|||||+.|+.+|..+++.|.   +|||+++.+...           ...+.   .+           .....+.+
T Consensus       147 ~~~vvViGgG~ig~E~A~~l~~~g~---~Vtlv~~~~~ll-----------~~~d~---~~-----------~~~~~~~l  198 (437)
T 4eqs_A          147 VDKVLVVGAGYVSLEVLENLYERGL---HPTLIHRSDKIN-----------KLMDA---DM-----------NQPILDEL  198 (437)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTC---EEEEEESSSCCS-----------TTSCG---GG-----------GHHHHHHH
T ss_pred             CcEEEEECCccchhhhHHHHHhcCC---cceeeeeecccc-----------ccccc---hh-----------HHHHHHHh
Confidence            5689999999999999999999987   899999875421           00000   00           12346677


Q ss_pred             HHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCC
Q 011351          131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS  175 (488)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~  175 (488)
                      ++.+++++.+++|.+++.  ..+++++|+++++|.+++|+|..|.
T Consensus       199 ~~~gV~i~~~~~v~~~~~--~~v~~~~g~~~~~D~vl~a~G~~Pn  241 (437)
T 4eqs_A          199 DKREIPYRLNEEINAING--NEITFKSGKVEHYDMIIEGVGTHPN  241 (437)
T ss_dssp             HHTTCCEEESCCEEEEET--TEEEETTSCEEECSEEEECCCEEES
T ss_pred             hccceEEEeccEEEEecC--CeeeecCCeEEeeeeEEEEeceecC
Confidence            889999999999998874  5688999999999999999998764

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.30  E-value=6.8e-06  Score=80.19  Aligned_cols=98  Identities=17%  Similarity=0.262  Sum_probs=74.9

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC------c------Cccc----------------------------c
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPEN------H------LLQR----------------------------L  246 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~-~v~lv~~~~------~------~l~~----------------------------~  246 (488)
                      .+|+|||+|+.|+.+|..|++.|. +|+++++.+      .      ++..                            .
T Consensus         5 ~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   84 (369)
T 3d1c_A            5 HKVAIIGAGAAGIGMAITLKDFGITDVIILEKGTVGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTFNEEH   84 (369)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSTTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHHHHCCSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCCCCCccccCcccccccCcchhcccCCchhhhhccccccccccccccC
Confidence            469999999999999999999999 999999874      0      0000                            0


Q ss_pred             -cCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351          247 -FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  308 (488)
Q Consensus       247 -~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~  308 (488)
                       ....+...+.+.+++.|+++++++.|++++..+++  ..|.+.++ ++.+|.||+|+|..+.
T Consensus        85 ~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g-~~~~d~vVlAtG~~~~  144 (369)
T 3d1c_A           85 ISGETYAEYLQVVANHYELNIFENTVVTNISADDAY--YTIATTTE-TYHADYIFVATGDYNF  144 (369)
T ss_dssp             CBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSS--EEEEESSC-CEEEEEEEECCCSTTS
T ss_pred             CCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCe--EEEEeCCC-EEEeCEEEECCCCCCc
Confidence             01245566677778899999999999999865333  24666776 5999999999999754

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.30  E-value=4.5e-06  Score=79.30  Aligned_cols=100  Identities=9%  Similarity=0.109  Sum_probs=70.0

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc----------Ccc--cccCHHHHHHHHHHHHHcCcEEEcCCeEEEEE
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH----------LLQ--RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLE  276 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~----------~l~--~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~  276 (488)
                      .|+|||+|+.|+..|..+++.|.+|+++++...          +..  ...++++.+...+.+.+.+...+....+..+.
T Consensus         8 DVvIIGaGpAGlsAA~~lar~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (304)
T 4fk1_A            8 DCAVIGAGPAGLNASLVLGRARKQIALFDNNTNRNRVTQNSHGFITRDGIKPEEFKEIGLNEVMKYPSVHYYEKTVVMIT   87 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCGGGGSSCBCCSTTCTTBCHHHHHHHHHHHHTTSTTEEEEECCEEEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCeeeeecCCccCCCCCCHHHHHHHHHHHHHhcCCEEEEeeEEEEee
Confidence            589999999999999999999999999987531          110  01123455555555555544434444556665


Q ss_pred             eCCCCcEEEEEeCCCcEEEcCEEEEeecCccCC
Q 011351          277 AGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  309 (488)
Q Consensus       277 ~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~  309 (488)
                      ..+++. ..+.+.+|+++.+|.||+|||.+|..
T Consensus        88 ~~~~~~-~~v~~~~g~~~~a~~liiATGs~p~~  119 (304)
T 4fk1_A           88 KQSTGL-FEIVTKDHTKYLAERVLLATGMQEEF  119 (304)
T ss_dssp             ECTTSC-EEEEETTCCEEEEEEEEECCCCEEEC
T ss_pred             ecCCCc-EEEEECCCCEEEeCEEEEccCCcccc
Confidence            443443 36888999999999999999998754

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.30  E-value=3.9e-06  Score=83.37  Aligned_cols=99  Identities=23%  Similarity=0.412  Sum_probs=75.5

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCc--EEEEecCCcCccc--ccCHHHH---------HHHHHHHHHcCcEEEcCCeEEE
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLD--TTIIFPENHLLQR--LFTPSLA---------QRYEQLYQQNGVKFVKGASIKN  274 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~--v~lv~~~~~~l~~--~~~~~~~---------~~~~~~l~~~GV~v~~~~~v~~  274 (488)
                      ++++|||+|+.|+.+|..|++.|.+  |+++++.+.+...  .+...+.         ....+.+++.||+++.+++++.
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   82 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPILAEADWYGEARIDMLTGPEVTA   82 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCSGGGGTHHHHTSSSSCCBSSCTTHHHHTTCEEEESCCEEE
T ss_pred             CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCCccccHHHhCCCCCHHHhcCCHHHHHHCCCEEEeCCEEEE
Confidence            5799999999999999999999987  9999988654211  0111111         1123456788999999999999


Q ss_pred             EEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCCh
Q 011351          275 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  310 (488)
Q Consensus       275 i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~  310 (488)
                      ++.. ..   .+.+.+|+++.+|.+|+|||.+|...
T Consensus        83 id~~-~~---~v~~~~g~~~~~d~lvlAtG~~p~~~  114 (410)
T 3ef6_A           83 LDVQ-TR---TISLDDGTTLSADAIVIATGSRARTM  114 (410)
T ss_dssp             EETT-TT---EEEETTSCEEECSEEEECCCEEECCC
T ss_pred             EECC-CC---EEEECCCCEEECCEEEEccCCcccCC
Confidence            9853 22   57788999999999999999987643

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.30  E-value=2.3e-06  Score=85.66  Aligned_cols=102  Identities=24%  Similarity=0.423  Sum_probs=76.2

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC--cEEEEecCCcCcc------c-ccC-----HHHHHHHHHHHHHcCcEEEcCCeE
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHLLQ------R-LFT-----PSLAQRYEQLYQQNGVKFVKGASI  272 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~--~v~lv~~~~~~l~------~-~~~-----~~~~~~~~~~l~~~GV~v~~~~~v  272 (488)
                      ..+++|||+|+.|+.+|..|++.|.  +|+++++.+.+..      + .+.     ..+.....+.+++.||+++.++.|
T Consensus         4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v   83 (431)
T 1q1r_A            4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQV   83 (431)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCCE
T ss_pred             CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcCCCCcHHHhCCCCChHHhcccCHHHHHhCCCEEEeCCEE
Confidence            3689999999999999999999998  7999998754321      0 000     011111235677889999999999


Q ss_pred             EEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhh
Q 011351          273 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF  312 (488)
Q Consensus       273 ~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~  312 (488)
                      +.++.. +.   .|.+.+|+++.+|.+|+|+|.+|....+
T Consensus        84 ~~i~~~-~~---~v~~~~g~~~~~d~lviAtG~~p~~~~i  119 (431)
T 1q1r_A           84 TAINRD-RQ---QVILSDGRALDYDRLVLATGGRPRPLPV  119 (431)
T ss_dssp             EEEETT-TT---EEEETTSCEEECSEEEECCCEEECCCGG
T ss_pred             EEEECC-CC---EEEECCCCEEECCEEEEcCCCCccCCCC
Confidence            999853 22   4677889899999999999999875433

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.29  E-value=8.7e-07  Score=86.68  Aligned_cols=99  Identities=23%  Similarity=0.315  Sum_probs=73.1

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc-c---------ccC-HHHHHHHHHHHHHcCcEEEcCCeEEE
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-R---------LFT-PSLAQRYEQLYQQNGVKFVKGASIKN  274 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~-~---------~~~-~~~~~~~~~~l~~~GV~v~~~~~v~~  274 (488)
                      .+.+++|||+|+.|+.+|..|++.| +|+++++.+.+.. +         ..+ .++.....+.+++.||+++.++.++.
T Consensus         7 ~~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~g~~v~~   85 (367)
T 1xhc_A            7 HGSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKL   85 (367)
T ss_dssp             --CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEE
T ss_pred             CCCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCccccchhHHHHhCCCCHHHhccCCHHHHHhCCcEEEECCEEEE
Confidence            4788999999999999999999999 9999998864321 0         011 11112234567788999999999999


Q ss_pred             EEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCCh
Q 011351          275 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  310 (488)
Q Consensus       275 i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~  310 (488)
                      ++.. ..   .|. .+|+++.+|.+|+|||.+|...
T Consensus        86 id~~-~~---~V~-~~g~~~~~d~lViATGs~p~~p  116 (367)
T 1xhc_A           86 IDRG-RK---VVI-TEKGEVPYDTLVLATGARAREP  116 (367)
T ss_dssp             EETT-TT---EEE-ESSCEEECSEEEECCCEEECCC
T ss_pred             EECC-CC---EEE-ECCcEEECCEEEECCCCCCCCC
Confidence            9853 22   344 6778899999999999988743

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.29  E-value=1.5e-06  Score=86.31  Aligned_cols=97  Identities=23%  Similarity=0.417  Sum_probs=74.6

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCC--cEEEEecCCcCccc-------cc-----CHHHHHHHHHHHHHcCcEEEcCCeEE
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHLLQR-------LF-----TPSLAQRYEQLYQQNGVKFVKGASIK  273 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~--~v~lv~~~~~~l~~-------~~-----~~~~~~~~~~~l~~~GV~v~~~~~v~  273 (488)
                      ++++|||+|+.|+.+|..|++.|.  +|+++++.+.+...       .+     ...+.....+.+++.+++++. .+++
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~-~~v~   80 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLMFRPEKFFQDQAIELIS-DRMV   80 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSGGGGTGGGGSCCCTTSSBSSCHHHHHHTTEEEEC-CCEE
T ss_pred             CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCccCCHHHHCCCCCHHHccCCCHHHHHhCCCEEEE-EEEE
Confidence            689999999999999999999998  89999987632110       00     111122345667788999999 8999


Q ss_pred             EEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCC
Q 011351          274 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  309 (488)
Q Consensus       274 ~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~  309 (488)
                      .++.. ..   .+.+.+|+++.+|.+|+|||.+|..
T Consensus        81 ~id~~-~~---~v~~~~g~~~~~d~lvlAtG~~p~~  112 (404)
T 3fg2_P           81 SIDRE-GR---KLLLASGTAIEYGHLVLATGARNRM  112 (404)
T ss_dssp             EEETT-TT---EEEESSSCEEECSEEEECCCEEECC
T ss_pred             EEECC-CC---EEEECCCCEEECCEEEEeeCCCccC
Confidence            99853 22   4778899999999999999998764

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=98.29  E-value=3.8e-07  Score=90.77  Aligned_cols=36  Identities=17%  Similarity=0.285  Sum_probs=32.6

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCc-EEEEcCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGR-LCIVSKEAY   88 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~-V~lie~~~~   88 (488)
                      .+++|+|||||++|+++|..|++.|.   + |+|+|+.+.
T Consensus         3 ~~~dVvIVGaG~aGl~~A~~L~~~G~---~~v~v~E~~~~   39 (410)
T 3c96_A            3 EPIDILIAGAGIGGLSCALALHQAGI---GKVTLLESSSE   39 (410)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTC---SEEEEEESSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCC---CeEEEEECCCC
Confidence            45899999999999999999999987   8 999999865

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=98.28  E-value=5e-07  Score=93.25  Aligned_cols=45  Identities=20%  Similarity=0.386  Sum_probs=35.8

Q ss_pred             HHHCCCeEEeCCcEEEEeCCC--c--EEEeCCCcEEEeccEEeccCCCCC
Q 011351          130 YKEKGIEMIYQDPVTSIDIEK--Q--TLITNSGKLLKYGSLIVATGCTAS  175 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~--~--~v~~~~g~~i~yd~lVlAtG~~~~  175 (488)
                      +.+.|++++.+ +|++++.+.  .  .|++.+|+++.+|.||.|+|....
T Consensus       175 a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s~  223 (538)
T 2aqj_A          175 AVERGVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRGL  223 (538)
T ss_dssp             HHHTTCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGCC
T ss_pred             HHHCCCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCchh
Confidence            34579999998 899997642  2  577788888999999999998654

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.28  E-value=1.3e-06  Score=89.10  Aligned_cols=98  Identities=14%  Similarity=0.196  Sum_probs=75.8

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (488)
                      .++++|||||+.|+.+|..|++.|.   +|+++++.+...   +.+..           .+           .....+.+
T Consensus       176 ~~~vvViGgG~ig~E~A~~l~~~g~---~Vtlv~~~~~~l---~~~d~-----------~~-----------~~~l~~~l  227 (500)
T 1onf_A          176 SKKIGIVGSGYIAVELINVIKRLGI---DSYIFARGNRIL---RKFDE-----------SV-----------INVLENDM  227 (500)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTC---EEEEECSSSSSC---TTSCH-----------HH-----------HHHHHHHH
T ss_pred             CCeEEEECChHHHHHHHHHHHHcCC---eEEEEecCCccC---cccch-----------hh-----------HHHHHHHH
Confidence            6799999999999999999999876   899999875421   00000           00           01235667


Q ss_pred             HHCCCeEEeCCcEEEEeCCC---cEEEeCCCcE-EEeccEEeccCCCCCc
Q 011351          131 KEKGIEMIYQDPVTSIDIEK---QTLITNSGKL-LKYGSLIVATGCTASR  176 (488)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~---~~v~~~~g~~-i~yd~lVlAtG~~~~~  176 (488)
                      ++.|+++++++.|.+++.+.   ..+++.+|++ +.+|.+|+|+|..|..
T Consensus       228 ~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~~p~~  277 (500)
T 1onf_A          228 KKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRSPDT  277 (500)
T ss_dssp             HHTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECCCBCCTT
T ss_pred             HhCCCEEEECCEEEEEEEcCCceEEEEECCCcEEEECCEEEECCCCCcCC
Confidence            88999999999999998643   3678888887 9999999999988763

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.28  E-value=1.4e-06  Score=86.72  Aligned_cols=98  Identities=14%  Similarity=0.216  Sum_probs=75.6

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (488)
                      .++++|||+|+.|+.+|..|++.|.   +|+++++.+.....       .+      ...+           .....+.+
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~~g~---~Vtvv~~~~~~l~~-------~~------~~~~-----------~~~l~~~l  204 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTKFGV---NVTLLEALPRVLAR-------VA------GEAL-----------SEFYQAEH  204 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSTTTT-------TS------CHHH-----------HHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCC---eEEEEecCCchhhh-------hc------CHHH-----------HHHHHHHH
Confidence            6799999999999999999999886   89999987653100       00      0000           01234567


Q ss_pred             HHCCCeEEeCCcEEEEeCCCc---EEEeCCCcEEEeccEEeccCCCCC
Q 011351          131 KEKGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCTAS  175 (488)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~---~v~~~~g~~i~yd~lVlAtG~~~~  175 (488)
                      ++.|++++.++.|.++..++.   .|++.+|+++.+|.+|+|+|..|.
T Consensus       205 ~~~GV~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~Vv~a~G~~p~  252 (415)
T 3lxd_A          205 RAHGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIGIVPC  252 (415)
T ss_dssp             HHTTCEEEETCCEEEEEESSSBEEEEEESSSCEEECSEEEECSCCEES
T ss_pred             HhCCCEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECCCCccC
Confidence            788999999999999987642   578889999999999999998765

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.27  E-value=4.9e-06  Score=82.29  Aligned_cols=100  Identities=15%  Similarity=0.123  Sum_probs=78.1

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc-------------------------------------------
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------------------------------------------  244 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~-------------------------------------------  244 (488)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++.+.+..                                           
T Consensus         7 ~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~g~~   86 (399)
T 2x3n_A            7 IDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYHDGEL   86 (399)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEEETTEE
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEeCCCCE
Confidence            4799999999999999999999999999998654300                                           


Q ss_pred             --c--------------ccCHHHHHHHHHHHHHc-CcEEEcCCeEEEEEeCCCCcEE-EEEeCCCcEEEcCEEEEeecCc
Q 011351          245 --R--------------LFTPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVA-AVKLEDGSTIDADTIVIGIGAK  306 (488)
Q Consensus       245 --~--------------~~~~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~~~v~-~v~l~~g~~i~~D~vi~a~G~~  306 (488)
                        .              .....+.+.+.+.+++. |+++++++++++++.+++ .+. .+.+.+|+++.+|.||.|+|..
T Consensus        87 ~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~-~v~g~v~~~~g~~~~ad~vV~AdG~~  165 (399)
T 2x3n_A           87 LRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDER-HAIDQVRLNDGRVLRPRVVVGADGIA  165 (399)
T ss_dssp             EEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTT-SCEEEEEETTSCEEEEEEEEECCCTT
T ss_pred             EEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCC-ceEEEEEECCCCEEECCEEEECCCCC
Confidence              0              00024455666677776 999999999999987544 342 5778899899999999999997


Q ss_pred             cC
Q 011351          307 PT  308 (488)
Q Consensus       307 p~  308 (488)
                      ..
T Consensus       166 s~  167 (399)
T 2x3n_A          166 SY  167 (399)
T ss_dssp             CH
T ss_pred             hH
Confidence            64

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.26  E-value=1.1e-06  Score=88.56  Aligned_cols=98  Identities=17%  Similarity=0.250  Sum_probs=73.2

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      ..++++|||||++|+.+|..|++.|.   +|+|+++.+...-.       .+      ...+           .....+.
T Consensus       148 ~~~~vvIiG~G~~g~e~A~~l~~~g~---~Vtlv~~~~~~l~~-------~~------~~~~-----------~~~l~~~  200 (447)
T 1nhp_A          148 EVNNVVVIGSGYIGIEAAEAFAKAGK---KVTVIDILDRPLGV-------YL------DKEF-----------TDVLTEE  200 (447)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSTTTT-------TC------CHHH-----------HHHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC---eEEEEecCcccccc-------cC------CHHH-----------HHHHHHH
Confidence            46899999999999999999999986   89999987642100       00      0000           1123556


Q ss_pred             HHHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCCC
Q 011351          130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  175 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~~  175 (488)
                      +++.|++++.++.|.+++.+++  .+.+ ++.++.+|.+|+|+|..|.
T Consensus       201 l~~~gv~i~~~~~v~~i~~~~~v~~v~~-~~~~i~~d~vi~a~G~~p~  247 (447)
T 1nhp_A          201 MEANNITIATGETVERYEGDGRVQKVVT-DKNAYDADLVVVAVGVRPN  247 (447)
T ss_dssp             HHTTTEEEEESCCEEEEECSSBCCEEEE-SSCEEECSEEEECSCEEES
T ss_pred             HHhCCCEEEcCCEEEEEEccCcEEEEEE-CCCEEECCEEEECcCCCCC
Confidence            6778999999999999987643  3555 5567999999999998765

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.24  E-value=5.4e-06  Score=85.02  Aligned_cols=103  Identities=21%  Similarity=0.277  Sum_probs=80.0

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC--cCc-----------ccccCHHHHHHHHHHHHHcCcEEEcCCeEE
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN--HLL-----------QRLFTPSLAQRYEQLYQQNGVKFVKGASIK  273 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~--~~l-----------~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~  273 (488)
                      ..+++|||+|+.|+.+|..|++.|.+|+++++..  .+.           +....+.+...+.+.+++.|++++.+++++
T Consensus       212 ~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~v~~~~~v~  291 (521)
T 1hyu_A          212 AYDVLIVGSGPAGAAAAVYSARKGIRTGLMGERFGGQVLDTVDIENYISVPKTEGQKLAGALKAHVSDYDVDVIDSQSAS  291 (521)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSTTGGGTTCSCBCCBTTBSSBCHHHHHHHHHHHHHTSCEEEECSCCEE
T ss_pred             cccEEEECCcHHHHHHHHHHHhCCCeEEEEECCCCCcccccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEcCCEEE
Confidence            4579999999999999999999999999997531  111           011234677788888899999999999999


Q ss_pred             EEEeCCC-CcEEEEEeCCCcEEEcCEEEEeecCccCC
Q 011351          274 NLEAGSD-GRVAAVKLEDGSTIDADTIVIGIGAKPTV  309 (488)
Q Consensus       274 ~i~~~~~-~~v~~v~l~~g~~i~~D~vi~a~G~~p~~  309 (488)
                      .+....+ +....|.+.+|+++.+|.||+|+|.+|..
T Consensus       292 ~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~~  328 (521)
T 1hyu_A          292 KLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRN  328 (521)
T ss_dssp             EEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEECC
T ss_pred             EEEeccCCCceEEEEECCCCEEEcCEEEECCCCCcCC
Confidence            9974321 22246788899899999999999988753

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=98.24  E-value=8.1e-06  Score=84.77  Aligned_cols=100  Identities=17%  Similarity=0.166  Sum_probs=77.7

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc------------------------------------------
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------------  245 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~------------------------------------------  245 (488)
                      ..|+|||+|..|+.+|..|++.|.+|+++++.+.+...                                          
T Consensus       127 ~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~~~  206 (571)
T 1y0p_A          127 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDP  206 (571)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCceEEeCCCHHHHHhCCCCCHHHHHHHHHHhcCCCCCH
Confidence            57999999999999999999999999999987533210                                          


Q ss_pred             ---------------------------------------------ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCC
Q 011351          246 ---------------------------------------------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD  280 (488)
Q Consensus       246 ---------------------------------------------~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~  280 (488)
                                                                   ..+..+...+.+.+++.||+++++++++++..+++
T Consensus       207 ~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~g~~~g~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~  286 (571)
T 1y0p_A          207 ALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDK  286 (571)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEECTT
T ss_pred             HHHHHHHHccHHHHHHHHhcCCCCccCcccCCcCCCeeEecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEeeEeEEcCC
Confidence                                                         00123445566777888999999999999987544


Q ss_pred             CcEEEEEeC--CCc--EEEcCEEEEeecCcc
Q 011351          281 GRVAAVKLE--DGS--TIDADTIVIGIGAKP  307 (488)
Q Consensus       281 ~~v~~v~l~--~g~--~i~~D~vi~a~G~~p  307 (488)
                      +++.+|.+.  +|+  ++.+|.||+|+|...
T Consensus       287 g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~  317 (571)
T 1y0p_A          287 GTVKGILVKGMYKGYYWVKADAVILATGGFA  317 (571)
T ss_dssp             SCEEEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred             CeEEEEEEEeCCCcEEEEECCeEEEeCCCcc
Confidence            777766665  675  689999999999754

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.24  E-value=1.3e-06  Score=88.74  Aligned_cols=99  Identities=15%  Similarity=0.221  Sum_probs=75.7

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      ..++++|||||+.|+.+|..|++.|.   +|+++++.+...   +.+..           .+           .....+.
T Consensus       184 ~~~~vvViGgG~ig~E~A~~l~~~g~---~Vtlv~~~~~~l---~~~d~-----------~~-----------~~~l~~~  235 (479)
T 2hqm_A          184 QPKKVVVVGAGYIGIELAGVFHGLGS---ETHLVIRGETVL---RKFDE-----------CI-----------QNTITDH  235 (479)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTC---EEEEECSSSSSC---TTSCH-----------HH-----------HHHHHHH
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCC---ceEEEEeCCccc---cccCH-----------HH-----------HHHHHHH
Confidence            45799999999999999999999886   899999876421   00000           00           0123556


Q ss_pred             HHHCCCeEEeCCcEEEEeCCC----cEEEeCCC-cEEEeccEEeccCCCCCc
Q 011351          130 YKEKGIEMIYQDPVTSIDIEK----QTLITNSG-KLLKYGSLIVATGCTASR  176 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~----~~v~~~~g-~~i~yd~lVlAtG~~~~~  176 (488)
                      +++.|++++.+++|.+++.+.    ..+++.+| +++.+|.+|+|+|..|..
T Consensus       236 l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~  287 (479)
T 2hqm_A          236 YVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHL  287 (479)
T ss_dssp             HHHHTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEECC
T ss_pred             HHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCCcc
Confidence            778899999999999998642    36788888 789999999999987763

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.24  E-value=8.4e-07  Score=89.53  Aligned_cols=98  Identities=14%  Similarity=0.279  Sum_probs=72.5

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      ..++++|||||+.|+.+|..|++.|.   +|+|+++.+...   |.+.           ..+           .....+.
T Consensus       169 ~~~~vvViGgG~~g~e~A~~l~~~g~---~Vtlv~~~~~~l---~~~~-----------~~~-----------~~~l~~~  220 (455)
T 1ebd_A          169 VPKSLVVIGGGYIGIELGTAYANFGT---KVTILEGAGEIL---SGFE-----------KQM-----------AAIIKKR  220 (455)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSSS---TTSC-----------HHH-----------HHHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCC---cEEEEEcCCccc---cccC-----------HHH-----------HHHHHHH
Confidence            35799999999999999999999986   899999875421   0000           000           0123456


Q ss_pred             HHHCCCeEEeCCcEEEEeCCCc--EEEeC---CCcEEEeccEEeccCCCCC
Q 011351          130 YKEKGIEMIYQDPVTSIDIEKQ--TLITN---SGKLLKYGSLIVATGCTAS  175 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~---~g~~i~yd~lVlAtG~~~~  175 (488)
                      +++.|++++.+++|.+++.+..  .+++.   +++++.+|.+|+|+|..|.
T Consensus       221 l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~  271 (455)
T 1ebd_A          221 LKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGRRPN  271 (455)
T ss_dssp             HHHTTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCEEES
T ss_pred             HHHCCCEEEeCCEEEEEEEeCCeEEEEEEeCCceeEEEcCEEEECcCCCcc
Confidence            7788999999999999986553  34443   4567999999999998775

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.23  E-value=1.5e-06  Score=88.63  Aligned_cols=98  Identities=17%  Similarity=0.301  Sum_probs=75.7

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHc---CCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEH---GMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQT  126 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~---g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (488)
                      ..++++|||||+.|+.+|..|++.   |.   +|+|+++.+...   +.+..           .+           ....
T Consensus       190 ~~~~vvViGgG~ig~E~A~~l~~~~~~g~---~Vtlv~~~~~~l---~~~d~-----------~~-----------~~~l  241 (495)
T 2wpf_A          190 PPRRVLTVGGGFISVEFAGIFNAYKPPGG---KVTLCYRNNLIL---RGFDE-----------TI-----------REEV  241 (495)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHCCTTC---EEEEEESSSSSC---TTSCH-----------HH-----------HHHH
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhhCCCCC---eEEEEEcCCccc---cccCH-----------HH-----------HHHH
Confidence            357999999999999999999998   76   899999876421   10000           00           1124


Q ss_pred             HhHHHHCCCeEEeCCcEEEEeCCC---cEEEeCCCcEEEeccEEeccCCCCC
Q 011351          127 PEWYKEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGSLIVATGCTAS  175 (488)
Q Consensus       127 ~~~~~~~~i~~~~~~~v~~id~~~---~~v~~~~g~~i~yd~lVlAtG~~~~  175 (488)
                      .+.+++.|++++.++.|.+++.+.   ..+++.+|+++.+|.+|+|+|..|.
T Consensus       242 ~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~  293 (495)
T 2wpf_A          242 TKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRIPR  293 (495)
T ss_dssp             HHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEEC
T ss_pred             HHHHHhCCCEEEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECCCCccc
Confidence            566788999999999999998653   3678888988999999999998765

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.23  E-value=1.4e-06  Score=90.91  Aligned_cols=98  Identities=19%  Similarity=0.376  Sum_probs=77.1

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      ..++++|||||+.|+.+|..|++.|.   +|+++++.+...   +.+..           .+           .....+.
T Consensus       186 ~~~~vvViGgG~~g~e~A~~l~~~g~---~Vtlv~~~~~~l---~~~~~-----------~~-----------~~~l~~~  237 (588)
T 3ics_A          186 KPRHATVIGGGFIGVEMVENLRERGI---EVTLVEMANQVM---PPIDY-----------EM-----------AAYVHEH  237 (588)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSC---TTSCH-----------HH-----------HHHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCC---eEEEEecCCccc---ccCCH-----------HH-----------HHHHHHH
Confidence            35799999999999999999999886   899999765421   00000           00           1123566


Q ss_pred             HHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCC
Q 011351          130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS  175 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~  175 (488)
                      +++.|++++.++.|.+++.+...+++.+|+++.+|.+|+|+|..|.
T Consensus       238 l~~~GV~i~~~~~v~~i~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~  283 (588)
T 3ics_A          238 MKNHDVELVFEDGVDALEENGAVVRLKSGSVIQTDMLILAIGVQPE  283 (588)
T ss_dssp             HHHTTCEEECSCCEEEEEGGGTEEEETTSCEEECSEEEECSCEEEC
T ss_pred             HHHcCCEEEECCeEEEEecCCCEEEECCCCEEEcCEEEEccCCCCC
Confidence            7889999999999999988767899999999999999999998765

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=98.22  E-value=2.9e-06  Score=86.67  Aligned_cols=35  Identities=17%  Similarity=0.459  Sum_probs=31.9

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      +++||+|||||++|+++|+.|+++|.   +|+|+|+++
T Consensus         2 ~~~DVvIIGgGi~G~~~A~~La~~G~---~V~llE~~~   36 (501)
T 2qcu_A            2 ETKDLIVIGGGINGAGIAADAAGRGL---SVLMLEAQD   36 (501)
T ss_dssp             -CBSEEEECCSHHHHHHHHHHHHTTC---CEEEECSSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCC---CEEEEECCC
Confidence            35799999999999999999999987   899999975

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.22  E-value=1.6e-06  Score=88.27  Aligned_cols=99  Identities=17%  Similarity=0.255  Sum_probs=76.1

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHc---CCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEH---GMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQT  126 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~---g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (488)
                      ..++++|||||+.|+.+|..|++.   |.   +|+++++.+...   +.+..           .+           ....
T Consensus       186 ~~~~vvViGgG~ig~E~A~~l~~~~~~g~---~Vtlv~~~~~~l---~~~d~-----------~~-----------~~~l  237 (490)
T 1fec_A          186 APKRALCVGGGYISIEFAGIFNAYKARGG---QVDLAYRGDMIL---RGFDS-----------EL-----------RKQL  237 (490)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHSCTTC---EEEEEESSSSSS---TTSCH-----------HH-----------HHHH
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhhccCcC---eEEEEEcCCCcc---cccCH-----------HH-----------HHHH
Confidence            357999999999999999999998   76   899999876421   00000           00           1224


Q ss_pred             HhHHHHCCCeEEeCCcEEEEeCCC---cEEEeCCCcEEEeccEEeccCCCCCc
Q 011351          127 PEWYKEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGSLIVATGCTASR  176 (488)
Q Consensus       127 ~~~~~~~~i~~~~~~~v~~id~~~---~~v~~~~g~~i~yd~lVlAtG~~~~~  176 (488)
                      .+.+++.|++++.++.|.+++.+.   ..+++.+|+++.+|.+|+|+|..|..
T Consensus       238 ~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~  290 (490)
T 1fec_A          238 TEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRS  290 (490)
T ss_dssp             HHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESC
T ss_pred             HHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcCEEEEccCCCcCc
Confidence            566788999999999999998653   36788888889999999999987753

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.21  E-value=6.9e-06  Score=78.44  Aligned_cols=99  Identities=18%  Similarity=0.251  Sum_probs=75.7

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc-----------Cccc----ccCHHHHHHHHHHHHHcCcEEEcCCeE
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH-----------LLQR----LFTPSLAQRYEQLYQQNGVKFVKGASI  272 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~-----------~l~~----~~~~~~~~~~~~~l~~~GV~v~~~~~v  272 (488)
                      .+++|||+|+.|+.+|..|++.|.+|+++++...           ..+.    ...+.+.+.+.+.+++.|++++.++ +
T Consensus         6 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v   84 (320)
T 1trb_A            6 SKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDH-I   84 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECCC-E
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEccCCCCceEecchhhhhCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEee-e
Confidence            4799999999999999999999999999985310           0011    1224667777888889999999986 8


Q ss_pred             EEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCCh
Q 011351          273 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  310 (488)
Q Consensus       273 ~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~  310 (488)
                      +.++.. ++.+ .+ +.+++++.+|.+|+|+|.+|...
T Consensus        85 ~~i~~~-~~~~-~v-~~~~~~~~~~~lv~AtG~~~~~~  119 (320)
T 1trb_A           85 NKVDLQ-NRPF-RL-NGDNGEYTCDALIIATGASARYL  119 (320)
T ss_dssp             EEEECS-SSSE-EE-EESSCEEEEEEEEECCCEEECCC
T ss_pred             eEEEec-CCEE-EE-EeCCCEEEcCEEEECCCCCcCCC
Confidence            888754 3333 34 56788899999999999987643

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.21  E-value=6.5e-06  Score=82.77  Aligned_cols=102  Identities=19%  Similarity=0.193  Sum_probs=75.4

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCC--cEEEEecCCcCc----cc---------------------------------c
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHLL----QR---------------------------------L  246 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~--~v~lv~~~~~~l----~~---------------------------------~  246 (488)
                      ..++|+|||+|+.|+.+|..|++.|.  +|+++++.+.+.    ..                                 .
T Consensus         5 ~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~~~   84 (447)
T 2gv8_A            5 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPL   84 (447)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCC
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccCch
Confidence            35789999999999999999999999  999999874321    00                                 0


Q ss_pred             --------------c--------------CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCC---Cc---
Q 011351          247 --------------F--------------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---GS---  292 (488)
Q Consensus       247 --------------~--------------~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~---g~---  292 (488)
                                    +              ...+.+++.+..++.++.++++++|+.++..+ +. ..|.+.+   |+   
T Consensus        85 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~-~~-~~V~~~~~~~G~~~~  162 (447)
T 2gv8_A           85 YRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKD-GS-WVVTYKGTKAGSPIS  162 (447)
T ss_dssp             CTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEET-TE-EEEEEEESSTTCCEE
T ss_pred             hhhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCC-Ce-EEEEEeecCCCCeeE
Confidence                          0              01455666666667788899999999998643 32 2455544   66   


Q ss_pred             EEEcCEEEEeecC--ccCC
Q 011351          293 TIDADTIVIGIGA--KPTV  309 (488)
Q Consensus       293 ~i~~D~vi~a~G~--~p~~  309 (488)
                      ++.+|.||+|+|.  .|+.
T Consensus       163 ~~~~d~VVvAtG~~s~p~~  181 (447)
T 2gv8_A          163 KDIFDAVSICNGHYEVPYI  181 (447)
T ss_dssp             EEEESEEEECCCSSSSBCB
T ss_pred             EEEeCEEEECCCCCCCCCC
Confidence            7999999999998  6653

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.20  E-value=5.5e-06  Score=79.84  Aligned_cols=99  Identities=19%  Similarity=0.303  Sum_probs=76.3

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC---cC--------ccc----ccCHHHHHHHHHHHHHcCcEEEcCCe
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN---HL--------LQR----LFTPSLAQRYEQLYQQNGVKFVKGAS  271 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~---~~--------l~~----~~~~~~~~~~~~~l~~~GV~v~~~~~  271 (488)
                      ..+++|||+|+.|+.+|..|++.|.+|+++++..   .+        .+.    ...+++.+.+.+.+++.|++++.++ 
T Consensus        14 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~-   92 (335)
T 2a87_A           14 VRDVIVIGSGPAGYTAALYAARAQLAPLVFEGTSFGGALMTTTDVENYPGFRNGITGPELMDEMREQALRFGADLRMED-   92 (335)
T ss_dssp             CEEEEEECCHHHHHHHHHHHHHTTCCCEEECCSSCSCGGGSCSCBCCSTTCTTCBCHHHHHHHHHHHHHHTTCEEECCC-
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCceeccchhhhcCCCCCCCCHHHHHHHHHHHHHHcCCEEEEee-
Confidence            4579999999999999999999999999998531   00        011    1124667777788888999999987 


Q ss_pred             EEEEEeCCCCcEEEE-EeCCCcEEEcCEEEEeecCccCC
Q 011351          272 IKNLEAGSDGRVAAV-KLEDGSTIDADTIVIGIGAKPTV  309 (488)
Q Consensus       272 v~~i~~~~~~~v~~v-~l~~g~~i~~D~vi~a~G~~p~~  309 (488)
                      +..++.  ++.. .+ .+++|+++.+|.+|+|+|..|..
T Consensus        93 v~~i~~--~~~~-~v~~~~~g~~~~~d~lviAtG~~~~~  128 (335)
T 2a87_A           93 VESVSL--HGPL-KSVVTADGQTHRARAVILAMGAAARY  128 (335)
T ss_dssp             EEEEEC--SSSS-EEEEETTSCEEEEEEEEECCCEEECC
T ss_pred             EEEEEe--CCcE-EEEEeCCCCEEEeCEEEECCCCCccC
Confidence            888875  2222 35 67888899999999999998764

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=98.20  E-value=1.5e-06  Score=90.41  Aligned_cols=35  Identities=26%  Similarity=0.293  Sum_probs=32.1

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      .+||||||||+||++||..|++.|.   +|+||||.+.
T Consensus         7 ~~DVvVVGaG~AGl~AA~~la~~G~---~V~vlEK~~~   41 (588)
T 2wdq_A            7 EFDAVVIGAGGAGMRAALQISQSGQ---TCALLSKVFP   41 (588)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCG
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCC---cEEEEecCCC
Confidence            5799999999999999999999987   8999999853

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=98.19  E-value=2.7e-06  Score=87.21  Aligned_cols=99  Identities=10%  Similarity=0.110  Sum_probs=74.9

Q ss_pred             CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCH
Q 011351           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP  127 (488)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (488)
                      ...+++++|||||+.|+..|..+++.|.   +|||+++...++.    .        +.   ++           .....
T Consensus       220 ~~lP~~lvIIGgG~IGlE~A~~~~~lG~---~VTii~~~~~L~~----~--------D~---ei-----------~~~l~  270 (542)
T 4b1b_A          220 KKDPGKTLVVGASYVALECSGFLNSLGY---DVTVAVRSIVLRG----F--------DQ---QC-----------AVKVK  270 (542)
T ss_dssp             SSCCCSEEEECCSHHHHHHHHHHHHHTC---CEEEEESSCSSTT----S--------CH---HH-----------HHHHH
T ss_pred             ccCCceEEEECCCHHHHHHHHHHHhcCC---eEEEecccccccc----c--------ch---hH-----------HHHHH
Confidence            3446899999999999999999999987   8999986433211    0        00   00           12245


Q ss_pred             hHHHHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCCC
Q 011351          128 EWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  175 (488)
Q Consensus       128 ~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~~  175 (488)
                      +.+++.+++++.+..+..+.....  .+.+.++..+.+|.|++|+|-+|+
T Consensus       271 ~~l~~~gi~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvGR~Pn  320 (542)
T 4b1b_A          271 LYMEEQGVMFKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIGRKGD  320 (542)
T ss_dssp             HHHHHTTCEEEETCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEES
T ss_pred             HHHHhhcceeecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEcccccCC
Confidence            677889999999999998876654  456778888999999999997665

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.18  E-value=2e-06  Score=88.29  Aligned_cols=96  Identities=20%  Similarity=0.236  Sum_probs=74.0

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHH
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYK  131 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (488)
                      ++++|||||+.|+.+|..|++.|.   +|+++++.+...   +.+.           ..+           .....+.++
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G~---~Vtlv~~~~~~l---~~~~-----------~~~-----------~~~l~~~l~  266 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATGR---RTVMLVRTEPLK---LIKD-----------NET-----------RAYVLDRMK  266 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSCTTT---TCCS-----------HHH-----------HHHHHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCC---eEEEEEecCccc---cccc-----------HHH-----------HHHHHHHHH
Confidence            899999999999999999999986   899999876421   0000           000           122456678


Q ss_pred             HCCCeEEeCCcEEEEeC--CC----cEEEeCCCc-EEEeccEEeccCCCCC
Q 011351          132 EKGIEMIYQDPVTSIDI--EK----QTLITNSGK-LLKYGSLIVATGCTAS  175 (488)
Q Consensus       132 ~~~i~~~~~~~v~~id~--~~----~~v~~~~g~-~i~yd~lVlAtG~~~~  175 (488)
                      +.|++++.+++|++++.  +.    ..|++.+|+ ++.+|.+|+|+|..|.
T Consensus       267 ~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~  317 (523)
T 1mo9_A          267 EQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPR  317 (523)
T ss_dssp             HTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEEC
T ss_pred             hCCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCccC
Confidence            89999999999999986  33    347777887 8999999999998765

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.18  E-value=1.9e-06  Score=82.38  Aligned_cols=37  Identities=27%  Similarity=0.371  Sum_probs=33.0

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHc--CCCCCcEEEEcCCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEH--GMADGRLCIVSKEAYA   89 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~--g~~~~~V~lie~~~~~   89 (488)
                      ..+||+|||||++|+++|..|+++  |.   +|+|||+.+..
T Consensus        78 ~~~DVvIVGgG~AGL~aA~~La~~~~G~---~V~LiEk~~~~  116 (344)
T 3jsk_A           78 AETDIVIVGAGSCGLSAAYVLSTLRPDL---RITIVEAGVAP  116 (344)
T ss_dssp             HBCSEEEECCSHHHHHHHHHHHHHCTTS---CEEEEESSSSC
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCC---EEEEEeCCCcc
Confidence            458999999999999999999997  66   89999998654

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.18  E-value=1.1e-06  Score=89.32  Aligned_cols=98  Identities=13%  Similarity=0.168  Sum_probs=74.0

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      ..++++|||||+.|+.+|..|++.|.   +|+|+++.+...   +.+.           ..+           .....+.
T Consensus       184 ~~~~vvViGgG~ig~E~A~~l~~~G~---~Vtlv~~~~~~l---~~~~-----------~~~-----------~~~l~~~  235 (482)
T 1ojt_A          184 VPGKLLIIGGGIIGLEMGTVYSTLGS---RLDVVEMMDGLM---QGAD-----------RDL-----------VKVWQKQ  235 (482)
T ss_dssp             CCSEEEEESCSHHHHHHHHHHHHHTC---EEEEECSSSSSS---TTSC-----------HHH-----------HHHHHHH
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCC---eEEEEEECCccc---cccC-----------HHH-----------HHHHHHH
Confidence            35799999999999999999999986   899999876421   0000           000           0123456


Q ss_pred             HHHCCCeEEeCCcEEEEeCCCc--EEEeCC----CcEEEeccEEeccCCCCC
Q 011351          130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNS----GKLLKYGSLIVATGCTAS  175 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~~----g~~i~yd~lVlAtG~~~~  175 (488)
                      +++.||+++++++|.+++.+..  .+++.+    |+++.+|.+|+|+|..|.
T Consensus       236 l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~~p~  287 (482)
T 1ojt_A          236 NEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPN  287 (482)
T ss_dssp             HGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCEEEC
T ss_pred             HHhcCCEEEECCEEEEEEEcCCeEEEEEeccCCCceEEEcCEEEECcCCCcC
Confidence            7788999999999999986543  566666    777999999999998775

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=98.18  E-value=8.1e-06  Score=80.69  Aligned_cols=100  Identities=17%  Similarity=0.278  Sum_probs=74.4

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc-----ccCHHHHH----------------------------
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----LFTPSLAQ----------------------------  253 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~-----~~~~~~~~----------------------------  253 (488)
                      ..+|+|||+|+.|+.+|..|++.|.+|+++++.+.....     .+.+...+                            
T Consensus         5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~   84 (397)
T 2vou_A            5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTGE   84 (397)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccccccChhHHHHHHHcCCccccccccccceEEEecCCCC
Confidence            468999999999999999999999999999987653111     01221111                            


Q ss_pred             ---------------HHHHHHHH--cCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351          254 ---------------RYEQLYQQ--NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  308 (488)
Q Consensus       254 ---------------~~~~~l~~--~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~  308 (488)
                                     .+.+.|.+  .|+++++++++++++.+++ .+ .+.+.+|+++.+|+||.|.|....
T Consensus        85 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~-~v-~v~~~~g~~~~ad~vV~AdG~~S~  154 (397)
T 2vou_A           85 RVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSE-TV-QMRFSDGTKAEANWVIGADGGASV  154 (397)
T ss_dssp             EEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSS-CE-EEEETTSCEEEESEEEECCCTTCH
T ss_pred             ccccccCcccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCC-EE-EEEECCCCEEECCEEEECCCcchh
Confidence                           12222222  3899999999999987544 33 588899999999999999998764

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=98.17  E-value=5.6e-07  Score=89.38  Aligned_cols=35  Identities=23%  Similarity=0.359  Sum_probs=31.9

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHc--CCCCCcEEEEcCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEH--GMADGRLCIVSKEA   87 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~--g~~~~~V~lie~~~   87 (488)
                      .++||+|||||++|+++|+.|+++  |.   +|+|||++.
T Consensus        35 ~~~dVvIIGaGi~Gls~A~~La~~~pG~---~V~vlE~~~   71 (405)
T 3c4n_A           35 EAFDIVVIGAGRMGAACAFYLRQLAPGR---SLLLVEEGG   71 (405)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHCTTS---CEEEECSSC
T ss_pred             CcCCEEEECCcHHHHHHHHHHHhcCCCC---eEEEEeCCC
Confidence            347999999999999999999999  87   899999974

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.16  E-value=1.6e-06  Score=88.08  Aligned_cols=99  Identities=17%  Similarity=0.309  Sum_probs=73.3

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      ..++++|||||+.|+.+|..|++.|.   +|+|+++.+...   +.+.           ..+           .....+.
T Consensus       182 ~~~~vvViGgG~~g~e~A~~l~~~g~---~Vtlv~~~~~~l---~~~~-----------~~~-----------~~~l~~~  233 (478)
T 1v59_A          182 IPKRLTIIGGGIIGLEMGSVYSRLGS---KVTVVEFQPQIG---ASMD-----------GEV-----------AKATQKF  233 (478)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSS---SSSC-----------HHH-----------HHHHHHH
T ss_pred             cCceEEEECCCHHHHHHHHHHHHcCC---EEEEEEeCCccc---cccC-----------HHH-----------HHHHHHH
Confidence            35799999999999999999999986   899999876421   0000           000           1224566


Q ss_pred             HHHCCCeEEeCCcEEEEeC--CCc--EEEeC-----CCcEEEeccEEeccCCCCCc
Q 011351          130 YKEKGIEMIYQDPVTSIDI--EKQ--TLITN-----SGKLLKYGSLIVATGCTASR  176 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~--~~~--~v~~~-----~g~~i~yd~lVlAtG~~~~~  176 (488)
                      +++.|++++.++.|++++.  +.+  .+.+.     +++++.+|.+|+|+|..|..
T Consensus       234 l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~  289 (478)
T 1v59_A          234 LKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYI  289 (478)
T ss_dssp             HHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEECC
T ss_pred             HHHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcCC
Confidence            7889999999999999986  443  45554     35679999999999987753

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.16  E-value=1.1e-05  Score=79.59  Aligned_cols=101  Identities=18%  Similarity=0.187  Sum_probs=76.4

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcC------cccc-----------------------------------
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL------LQRL-----------------------------------  246 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~------l~~~-----------------------------------  246 (488)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++.+..      ....                                   
T Consensus         3 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~   82 (394)
T 1k0i_A            3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQ   82 (394)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETTE
T ss_pred             ccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEEECCc
Confidence            36999999999999999999999999999987531      0000                                   


Q ss_pred             -----------------cC-HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe-CCCc--EEEcCEEEEeecC
Q 011351          247 -----------------FT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL-EDGS--TIDADTIVIGIGA  305 (488)
Q Consensus       247 -----------------~~-~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l-~~g~--~i~~D~vi~a~G~  305 (488)
                                       ++ ..+.+.+.+.+.+.|+++++++++++++..+++.+ .|.+ .+|+  ++.+|+||.|.|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~-~v~~~~~g~~~~~~a~~vV~AdG~  161 (394)
T 1k0i_A           83 RRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERP-YVTFERDGERLRLDCDYIAGCDGF  161 (394)
T ss_dssp             EEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSC-EEEEEETTEEEEEECSEEEECCCT
T ss_pred             eEEeccccccCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCce-EEEEecCCcEEEEEeCEEEECCCC
Confidence                             01 23445566667778999999999999986433333 4666 6887  7999999999999


Q ss_pred             ccCC
Q 011351          306 KPTV  309 (488)
Q Consensus       306 ~p~~  309 (488)
                      ....
T Consensus       162 ~S~v  165 (394)
T 1k0i_A          162 HGIS  165 (394)
T ss_dssp             TCST
T ss_pred             CcHH
Confidence            7753

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.15  E-value=1.2e-05  Score=76.92  Aligned_cols=99  Identities=16%  Similarity=0.208  Sum_probs=74.8

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc---C--------ccc---ccCHHHHHHHHHHHHHcCcEEEcCCeE
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH---L--------LQR---LFTPSLAQRYEQLYQQNGVKFVKGASI  272 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~---~--------l~~---~~~~~~~~~~~~~l~~~GV~v~~~~~v  272 (488)
                      ..+++|||+|+.|+.+|..|++.|.+|+++++...   +        .+.   ....++.+.+.+.+++.|++++. .++
T Consensus        16 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v   94 (319)
T 3cty_A           16 DFDVVIVGAGAAGFSAAVYAARSGFSVAILDKAVAGGLTAEAPLVENYLGFKSIVGSELAKLFADHAANYAKIREG-VEV   94 (319)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSTTGGGGGCSCBCCBTTBSSBCHHHHHHHHHHHHHTTSEEEET-CCE
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCccccccchhhhcCCCcccCHHHHHHHHHHHHHHcCCEEEE-eeE
Confidence            35799999999999999999999999999998421   0        111   11245667777888889999998 688


Q ss_pred             EEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCC
Q 011351          273 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  309 (488)
Q Consensus       273 ~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~  309 (488)
                      +.++..+ +.+ .+.+ +++++.+|.+|+|+|..|..
T Consensus        95 ~~i~~~~-~~~-~v~~-~~~~~~~~~li~AtG~~~~~  128 (319)
T 3cty_A           95 RSIKKTQ-GGF-DIET-NDDTYHAKYVIITTGTTHKH  128 (319)
T ss_dssp             EEEEEET-TEE-EEEE-SSSEEEEEEEEECCCEEECC
T ss_pred             EEEEEeC-CEE-EEEE-CCCEEEeCEEEECCCCCccc
Confidence            8887542 222 3555 56789999999999988764

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.15  E-value=4.3e-06  Score=84.14  Aligned_cols=100  Identities=23%  Similarity=0.404  Sum_probs=70.6

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCcCccc------cc-----CHHHHHHHHHHH-HHcCcEEEcCCeE
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQR------LF-----TPSLAQRYEQLY-QQNGVKFVKGASI  272 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~--g~~v~lv~~~~~~l~~------~~-----~~~~~~~~~~~l-~~~GV~v~~~~~v  272 (488)
                      .++++|||+|+.|+.+|..|++.  +.+|+++++.+.+...      .+     ...+.....+.+ ++.|+++++++++
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~v   82 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCGIPYVVEGLSTPDKLMYYPPEVFIKKRGIDLHLNAEV   82 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC------------------------CTHHHHTTCEEETTCEE
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCcCCccccCCCCCHHHhhhcCHHHHHHhcCcEEEecCEE
Confidence            36899999999999999999987  7799999998753211      00     011112222333 6789999999999


Q ss_pred             EEEEeCCCCcEEEEEeCCC-cEEEcCEEEEeecCccCCh
Q 011351          273 KNLEAGSDGRVAAVKLEDG-STIDADTIVIGIGAKPTVS  310 (488)
Q Consensus       273 ~~i~~~~~~~v~~v~l~~g-~~i~~D~vi~a~G~~p~~~  310 (488)
                      +.++..  .  ..+.+.++ .++.+|.+|+|||.+|...
T Consensus        83 ~~i~~~--~--~~v~~~~g~~~~~~d~lviAtG~~p~~p  117 (449)
T 3kd9_A           83 IEVDTG--Y--VRVRENGGEKSYEWDYLVFANGASPQVP  117 (449)
T ss_dssp             EEECSS--E--EEEECSSSEEEEECSEEEECCCEEECCC
T ss_pred             EEEecC--C--CEEEECCceEEEEcCEEEECCCCCCCCC
Confidence            998632  2  24666777 4799999999999988643

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.15  E-value=2.3e-06  Score=86.81  Aligned_cols=99  Identities=11%  Similarity=0.170  Sum_probs=72.9

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      ..++++|||||+.|+.+|..|++.|.   +|+|+++.+...-.  .+.           ..+           .....+.
T Consensus       177 ~~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l~~--~~~-----------~~~-----------~~~l~~~  229 (474)
T 1zmd_A          177 VPEKMVVIGAGVIGVELGSVWQRLGA---DVTAVEFLGHVGGV--GID-----------MEI-----------SKNFQRI  229 (474)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSSCS--SCC-----------HHH-----------HHHHHHH
T ss_pred             cCceEEEECCCHHHHHHHHHHHHcCC---EEEEEeccCccCCc--ccC-----------HHH-----------HHHHHHH
Confidence            35799999999999999999999986   89999987642100  000           000           0124566


Q ss_pred             HHHCCCeEEeCCcEEEEeCCCc---EEEe-----CCCcEEEeccEEeccCCCCC
Q 011351          130 YKEKGIEMIYQDPVTSIDIEKQ---TLIT-----NSGKLLKYGSLIVATGCTAS  175 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~---~v~~-----~~g~~i~yd~lVlAtG~~~~  175 (488)
                      +++.|++++.+++|.+++.+..   .+++     .+++++.+|.+|+|+|..|.
T Consensus       230 l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~p~  283 (474)
T 1zmd_A          230 LQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPF  283 (474)
T ss_dssp             HHHTTCEEECSEEEEEEEECTTSCEEEEEEETTSCCCEEEEESEEEECSCEEEC
T ss_pred             HHHCCCEEEeCceEEEEEEcCCceEEEEEEecCCCCceEEEcCEEEECcCCCcC
Confidence            7889999999999999987552   3442     45678999999999998765

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=98.15  E-value=1.2e-05  Score=78.81  Aligned_cols=62  Identities=16%  Similarity=0.310  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcC
Q 011351          251 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG  316 (488)
Q Consensus       251 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~g  316 (488)
                      +...+.+.+++.|++++.+++|++++.. ++.+ .|.+.+| ++.+|.||+|+|.... .++...+
T Consensus       166 ~~~~l~~~~~~~g~~i~~~~~v~~i~~~-~~~~-~v~~~~g-~~~a~~vV~A~G~~s~-~l~~~~~  227 (382)
T 1ryi_A          166 VCKAYVKAAKMLGAEIFEHTPVLHVERD-GEAL-FIKTPSG-DVWANHVVVASGVWSG-MFFKQLG  227 (382)
T ss_dssp             HHHHHHHHHHHTTCEEETTCCCCEEECS-SSSE-EEEETTE-EEEEEEEEECCGGGTH-HHHHHTT
T ss_pred             HHHHHHHHHHHCCCEEEcCCcEEEEEEE-CCEE-EEEcCCc-eEEcCEEEECCChhHH-HHHHhcC
Confidence            5566777788899999999999999864 4455 6777777 7999999999998753 4555544

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.15  E-value=2e-06  Score=86.94  Aligned_cols=98  Identities=20%  Similarity=0.272  Sum_probs=72.9

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      ..++++|||||+.|+.+|..|++.|.   +|+|+++.+...   |.+.           ..+           .....+.
T Consensus       170 ~~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l---~~~~-----------~~~-----------~~~l~~~  221 (464)
T 2a8x_A          170 LPKSIIIAGAGAIGMEFGYVLKNYGV---DVTIVEFLPRAL---PNED-----------ADV-----------SKEIEKQ  221 (464)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSS---TTSC-----------HHH-----------HHHHHHH
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHcCC---eEEEEEcCCccc---cccC-----------HHH-----------HHHHHHH
Confidence            35799999999999999999999986   899999875421   0000           000           0123566


Q ss_pred             HHHCCCeEEeCCcEEEEeCCCc--EEEeC-CC--cEEEeccEEeccCCCCC
Q 011351          130 YKEKGIEMIYQDPVTSIDIEKQ--TLITN-SG--KLLKYGSLIVATGCTAS  175 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~-~g--~~i~yd~lVlAtG~~~~  175 (488)
                      +++.|++++.++.|.+++.+..  .+.+. +|  +++.+|.+|+|+|..|.
T Consensus       222 l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~  272 (464)
T 2a8x_A          222 FKKLGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPN  272 (464)
T ss_dssp             HHHHTCEEECSCEEEEEEECSSCEEEEEESSSCEEEEEESEEEECSCEEEC
T ss_pred             HHHcCCEEEeCcEEEEEEEcCCeEEEEEEcCCceEEEEcCEEEECCCCCcc
Confidence            7788999999999999986543  44543 56  57999999999998765

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=98.14  E-value=3.1e-05  Score=79.76  Aligned_cols=99  Identities=14%  Similarity=0.181  Sum_probs=75.2

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc--------cc------------ccC----------------HHH
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--------QR------------LFT----------------PSL  251 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l--------~~------------~~~----------------~~~  251 (488)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++.+.+-        +.            .+.                +++
T Consensus        17 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~~~~~i   96 (542)
T 1w4x_A           17 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEI   96 (542)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHHH
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccCCHHHH
Confidence            369999999999999999999999999999875321        00            001                234


Q ss_pred             HHHHHHHHHHcC--cEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCc
Q 011351          252 AQRYEQLYQQNG--VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  306 (488)
Q Consensus       252 ~~~~~~~l~~~G--V~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~  306 (488)
                      .+++....++.+  ++++++++|++++.+++.....|.+.+|+++.+|.||+|+|..
T Consensus        97 ~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~  153 (542)
T 1w4x_A           97 LRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQL  153 (542)
T ss_dssp             HHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSC
T ss_pred             HHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCC
Confidence            555666566655  6789999999998654433446888899899999999999963

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.14  E-value=4e-06  Score=85.56  Aligned_cols=99  Identities=14%  Similarity=0.259  Sum_probs=75.4

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      ..++++|||||+.|+.+|..|++.|.   +|+++++.+...   +.+.           ..+           .....+.
T Consensus       181 ~~~~vvViGgG~ig~E~A~~l~~~g~---~Vtlv~~~~~~l---~~~d-----------~~~-----------~~~l~~~  232 (499)
T 1xdi_A          181 LPDHLIVVGSGVTGAEFVDAYTELGV---PVTVVASQDHVL---PYED-----------ADA-----------ALVLEES  232 (499)
T ss_dssp             CCSSEEEESCSHHHHHHHHHHHHTTC---CEEEECSSSSSS---CCSS-----------HHH-----------HHHHHHH
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCC---eEEEEEcCCccc---cccC-----------HHH-----------HHHHHHH
Confidence            35799999999999999999999876   899999875421   0000           000           1224566


Q ss_pred             HHHCCCeEEeCCcEEEEeCCC--cEEEeCCCcEEEeccEEeccCCCCCc
Q 011351          130 YKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASR  176 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~--~~v~~~~g~~i~yd~lVlAtG~~~~~  176 (488)
                      +++.|+++++++.|.+++.+.  -.+.+.+|+++.+|.+|+|+|..|..
T Consensus       233 l~~~GV~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~  281 (499)
T 1xdi_A          233 FAERGVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGSVPNT  281 (499)
T ss_dssp             HHHTTCEEETTCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECC
T ss_pred             HHHCCCEEEeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEECCCCCcCC
Confidence            788999999999999998765  35666788889999999999987753

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=98.14  E-value=1.5e-06  Score=91.38  Aligned_cols=37  Identities=27%  Similarity=0.393  Sum_probs=33.1

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHH-cCCCCCcEEEEcCCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVE-HGMADGRLCIVSKEAYA   89 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~-~g~~~~~V~lie~~~~~   89 (488)
                      .+++|+|||||++|+++|..|++ .|.   +|+|||+.+..
T Consensus        31 ~~~dVlIVGaGpaGL~~A~~La~~~G~---~V~viEr~~~~   68 (639)
T 2dkh_A           31 SQVDVLIVGCGPAGLTLAAQLAAFPDI---RTCIVEQKEGP   68 (639)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHTTCTTS---CEEEECSSSSC
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHhCCC---CEEEEeCCCCC
Confidence            35799999999999999999999 887   89999998653

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=98.13  E-value=3.4e-06  Score=85.85  Aligned_cols=99  Identities=17%  Similarity=0.297  Sum_probs=73.6

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHh
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (488)
                      ...++|+|||||+.|+.+|..|++.|.   +|+|+++.+...      .. .+      ...+           .....+
T Consensus       192 ~~~~~vvVIGgG~ig~E~A~~l~~~g~---~Vtlv~~~~~~l------~~-~~------~~~~-----------~~~l~~  244 (490)
T 2bc0_A          192 KDIKRVAVVGAGYIGVELAEAFQRKGK---EVVLIDVVDTCL------AG-YY------DRDL-----------TDLMAK  244 (490)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSTT------TT-TS------CHHH-----------HHHHHH
T ss_pred             cCCceEEEECCCHHHHHHHHHHHHCCC---eEEEEEcccchh------hh-HH------HHHH-----------HHHHHH
Confidence            346799999999999999999999986   899999876421      00 00      0000           012345


Q ss_pred             HHHHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCCC
Q 011351          129 WYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  175 (488)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~~  175 (488)
                      .+++.|++++.+++|.+++.+++  .+.+ +|+++.+|.+|+|+|..|.
T Consensus       245 ~l~~~GV~i~~~~~v~~i~~~~~v~~v~~-~g~~i~~D~Vi~a~G~~p~  292 (490)
T 2bc0_A          245 NMEEHGIQLAFGETVKEVAGNGKVEKIIT-DKNEYDVDMVILAVGFRPN  292 (490)
T ss_dssp             HHHTTTCEEEETCCEEEEECSSSCCEEEE-SSCEEECSEEEECCCEEEC
T ss_pred             HHHhCCeEEEeCCEEEEEEcCCcEEEEEE-CCcEEECCEEEECCCCCcC
Confidence            67788999999999999987543  3555 6778999999999998765

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.12  E-value=1.2e-05  Score=76.39  Aligned_cols=100  Identities=14%  Similarity=0.161  Sum_probs=74.9

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc----C----c------------ccccCHHHHHHHHHHHHHcCcEEE
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH----L----L------------QRLFTPSLAQRYEQLYQQNGVKFV  267 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~----~----l------------~~~~~~~~~~~~~~~l~~~GV~v~  267 (488)
                      ..|+|||+|+.|+.+|..++++|.+|+++++...    +    .            .....+++...+.+.+++.++++.
T Consensus         5 yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~gg~~~~G~~~~~~~i~~~~g~~~~i~~~~l~~~~~~~~~~~~~~~~   84 (314)
T 4a5l_A            5 HDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGIDGNELMMNMRTQSEKYGTTII   84 (314)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSGGGCCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcccCCCcCChHHhhhccCCcccCCHHHHHHHHHHHHhhcCcEEE
Confidence            3589999999999999999999999999987531    0    0            001124677778888899999988


Q ss_pred             cCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCCh
Q 011351          268 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  310 (488)
Q Consensus       268 ~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~  310 (488)
                      ... +.......+.  ..+.+.++.++.+|.+|+|||.+|...
T Consensus        85 ~~~-v~~~~~~~~~--~~~~~~~~~~~~~~~liiATG~~~~~~  124 (314)
T 4a5l_A           85 TET-IDHVDFSTQP--FKLFTEEGKEVLTKSVIIATGATAKRM  124 (314)
T ss_dssp             CCC-EEEEECSSSS--EEEEETTCCEEEEEEEEECCCEEECCC
T ss_pred             EeE-EEEeecCCCc--eEEEECCCeEEEEeEEEEccccccccc
Confidence            764 5555433222  356778889999999999999987643

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=98.12  E-value=3e-06  Score=88.26  Aligned_cols=35  Identities=31%  Similarity=0.317  Sum_probs=32.1

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      ..+||||||||+||++||..|++.|.   +|+|||+..
T Consensus        17 ~~~DVvVVG~G~AGl~AAl~aa~~G~---~V~vlEK~~   51 (621)
T 2h88_A           17 HEFDAVVVGAGGAGLRAAFGLSEAGF---NTACVTKLF   51 (621)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSC
T ss_pred             ccCCEEEECccHHHHHHHHHHHHCCC---cEEEEeccC
Confidence            35799999999999999999999987   899999975

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.11  E-value=3.2e-06  Score=85.59  Aligned_cols=98  Identities=15%  Similarity=0.237  Sum_probs=72.2

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      ..++++|||||+.|+.+|..|++.|.   +|+++++.+...   +.+.           ..+           .....+.
T Consensus       173 ~~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l---~~~d-----------~~~-----------~~~l~~~  224 (468)
T 2qae_A          173 VPKTMVVIGGGVIGLELGSVWARLGA---EVTVVEFAPRCA---PTLD-----------EDV-----------TNALVGA  224 (468)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSS---TTSC-----------HHH-----------HHHHHHH
T ss_pred             CCceEEEECCCHHHHHHHHHHHHhCC---EEEEEecCCccc---ccCC-----------HHH-----------HHHHHHH
Confidence            45799999999999999999999886   899999875421   0000           000           1224566


Q ss_pred             H-HHCCCeEEeCCcEEEEeCCC--cEEEeC--CC--cEEEeccEEeccCCCCC
Q 011351          130 Y-KEKGIEMIYQDPVTSIDIEK--QTLITN--SG--KLLKYGSLIVATGCTAS  175 (488)
Q Consensus       130 ~-~~~~i~~~~~~~v~~id~~~--~~v~~~--~g--~~i~yd~lVlAtG~~~~  175 (488)
                      + ++.|++++.+++|.+++.+.  ..+.+.  +|  +++.+|.+|+|+|..|.
T Consensus       225 l~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~p~  277 (468)
T 2qae_A          225 LAKNEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRPF  277 (468)
T ss_dssp             HHHHTCCEEECSCEEEEEEECSSSEEEEEECC---EEEEEESEEEECSCEEEC
T ss_pred             HhhcCCcEEEeCCEEEEEEEcCCeEEEEEEcCCCceEEEECCEEEECCCcccC
Confidence            7 88999999999999998754  345554  66  57999999999998765

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=98.10  E-value=2.1e-05  Score=81.33  Aligned_cols=99  Identities=19%  Similarity=0.236  Sum_probs=76.2

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc-Cc-----------------------cc------------------
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH-LL-----------------------QR------------------  245 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~-~l-----------------------~~------------------  245 (488)
                      -.|+|||+|..|+++|..+++.|.+|.++++.+. +.                       ..                  
T Consensus        29 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f~~l~~  108 (651)
T 3ces_A           29 FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRILNA  108 (651)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEEEEEST
T ss_pred             CCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccchhhhhc
Confidence            4699999999999999999999999999997631 10                       00                  


Q ss_pred             -----------ccC-HHHHHHHHHHHHH-cCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351          246 -----------LFT-PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  308 (488)
Q Consensus       246 -----------~~~-~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~  308 (488)
                                 ..+ ..+...+.+.+++ .|++++ +..|+.+..+ ++.+.+|.+.+|.++.||.||+|+|..+.
T Consensus       109 ~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~-~~~V~~L~~e-~g~V~GV~t~dG~~I~Ad~VVLATGt~s~  182 (651)
T 3ces_A          109 SKGPAVRATRAQADRVLYRQAVRTALENQPNLMIF-QQAVEDLIVE-NDRVVGAVTQMGLKFRAKAVVLTVGTFLD  182 (651)
T ss_dssp             TSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEES-SSBEEEEEETTSEEEEEEEEEECCSTTTC
T ss_pred             ccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEE-EEEEEEEEec-CCEEEEEEECCCCEEECCEEEEcCCCCcc
Confidence                       001 1345566677777 699995 5689999754 56777889999988999999999998654

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=98.10  E-value=3e-06  Score=87.52  Aligned_cols=36  Identities=17%  Similarity=0.257  Sum_probs=32.8

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   89 (488)
                      +++|+|||||++|+++|..|++.|.   +|+|||+.+..
T Consensus        26 ~~dVlIVGaGpaGl~~A~~La~~G~---~V~vlEr~~~~   61 (549)
T 2r0c_A           26 ETDVLILGGGPVGMALALDLAHRQV---GHLVVEQTDGT   61 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSCSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC---CEEEEeCCCCC
Confidence            4799999999999999999999987   89999998653

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=98.10  E-value=4.8e-06  Score=85.31  Aligned_cols=45  Identities=11%  Similarity=0.139  Sum_probs=35.7

Q ss_pred             HHHCCCeEEeCCcEEEEeCC--C--cEEEeCCCcEEEeccEEeccCCCCC
Q 011351          130 YKEKGIEMIYQDPVTSIDIE--K--QTLITNSGKLLKYGSLIVATGCTAS  175 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~--~--~~v~~~~g~~i~yd~lVlAtG~~~~  175 (488)
                      +.+.|++++.+ +|+++..+  .  ..|++.+|+++.+|.||.|+|....
T Consensus       183 a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~  231 (511)
T 2weu_A          183 AIARGVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRGL  231 (511)
T ss_dssp             HHHTTCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGCC
T ss_pred             HHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcchH
Confidence            34579999998 99999763  2  2467788888999999999998654

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.10  E-value=6.4e-06  Score=83.23  Aligned_cols=102  Identities=14%  Similarity=0.155  Sum_probs=75.3

Q ss_pred             eEEEECCCHHHHHHHHHHHhCC-----CcEEEEecCCcCccc--------------------------------------
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWK-----LDTTIIFPENHLLQR--------------------------------------  245 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g-----~~v~lv~~~~~~l~~--------------------------------------  245 (488)
                      .|+|||+|+.|+.+|..|++.|     .+|+++++.+.+--.                                      
T Consensus        32 dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~l~~~~  111 (463)
T 3s5w_A           32 DLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNYLHKHD  111 (463)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHHHHHTT
T ss_pred             CEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcCCCCCCCCcCCcchhhccccccCCCCCCChhHhhhhcC
Confidence            6999999999999999999999     899999987632100                                      


Q ss_pred             ----------c--cCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCC-CcE--EEEEeCCCc----EEEcCEEEEeecCc
Q 011351          246 ----------L--FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD-GRV--AAVKLEDGS----TIDADTIVIGIGAK  306 (488)
Q Consensus       246 ----------~--~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~-~~v--~~v~l~~g~----~i~~D~vi~a~G~~  306 (488)
                                .  ...++.+++....++.+++++++++|++++..++ +..  ..|.+.+|+    ++.+|.||+|+|..
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlAtG~~  191 (463)
T 3s5w_A          112 RLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSPGGT  191 (463)
T ss_dssp             CHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEECCCCE
T ss_pred             ceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEECCCCC
Confidence                      0  0123445555556667899999999999986421 222  256666665    89999999999998


Q ss_pred             cCCh
Q 011351          307 PTVS  310 (488)
Q Consensus       307 p~~~  310 (488)
                      |...
T Consensus       192 p~~p  195 (463)
T 3s5w_A          192 PRIP  195 (463)
T ss_dssp             ECCC
T ss_pred             CCCc
Confidence            8644

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.10  E-value=5.8e-06  Score=83.28  Aligned_cols=101  Identities=14%  Similarity=0.243  Sum_probs=73.1

Q ss_pred             CeEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCcCc--cc----ccCH------HHHHHHHHHHHHcCcEEEcCCeEE
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLL--QR----LFTP------SLAQRYEQLYQQNGVKFVKGASIK  273 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~--g~~v~lv~~~~~~l--~~----~~~~------~~~~~~~~~l~~~GV~v~~~~~v~  273 (488)
                      ++++|||+|+.|+.+|..|++.  +.+|+++++.+.+-  +.    .+..      .+.....+.+++.|++++.+++++
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~V~   82 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFNHTINELHEARYITEEELRRQKIQLLLNREVV   82 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC----------------CCCCHHHHHHTTEEEECSCEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccchhhhcCCCCCHHHhhcCCHHHHHHCCCEEEECCEEE
Confidence            5899999999999999999998  88999999887542  10    0111      111113466788999999999999


Q ss_pred             EEEeCCCCcEEEEE-eCCCcEEEcCEEEEeecCccCCh
Q 011351          274 NLEAGSDGRVAAVK-LEDGSTIDADTIVIGIGAKPTVS  310 (488)
Q Consensus       274 ~i~~~~~~~v~~v~-l~~g~~i~~D~vi~a~G~~p~~~  310 (488)
                      .++.. ...+ .+. ..+++++.+|.+|+|||.+|...
T Consensus        83 ~id~~-~~~v-~v~~~~~~~~~~~d~lviAtG~~p~~p  118 (452)
T 3oc4_A           83 AMDVE-NQLI-AWTRKEEQQWYSYDKLILATGASQFST  118 (452)
T ss_dssp             EEETT-TTEE-EEEETTEEEEEECSEEEECCCCCBCCC
T ss_pred             EEECC-CCEE-EEEecCceEEEEcCEEEECCCcccCCC
Confidence            99854 3332 232 23556799999999999988653

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.10  E-value=2.2e-05  Score=76.96  Aligned_cols=61  Identities=16%  Similarity=0.225  Sum_probs=46.4

Q ss_pred             HHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcC
Q 011351          253 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG  316 (488)
Q Consensus       253 ~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~g  316 (488)
                      ..+.+.+++.|++++.+++|++++.+ ++.+.+|.+.+| ++.+|.||+|+|.... .+++..+
T Consensus       153 ~~l~~~~~~~Gv~i~~~~~v~~i~~~-~~~v~gv~~~~g-~i~a~~VV~A~G~~s~-~l~~~~g  213 (382)
T 1y56_B          153 TAFAVKAKEYGAKLLEYTEVKGFLIE-NNEIKGVKTNKG-IIKTGIVVNATNAWAN-LINAMAG  213 (382)
T ss_dssp             HHHHHHHHHTTCEEECSCCEEEEEES-SSBEEEEEETTE-EEECSEEEECCGGGHH-HHHHHHT
T ss_pred             HHHHHHHHHCCCEEECCceEEEEEEE-CCEEEEEEECCc-EEECCEEEECcchhHH-HHHHHcC
Confidence            34566677889999999999999865 456656888777 7999999999998753 3444333

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=98.09  E-value=2.2e-05  Score=80.89  Aligned_cols=99  Identities=17%  Similarity=0.251  Sum_probs=76.3

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc-Cc-----------------------cc------------------
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH-LL-----------------------QR------------------  245 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~-~l-----------------------~~------------------  245 (488)
                      -.|+|||+|..|+++|..+++.|.+|.++++.+. +.                       ..                  
T Consensus        28 yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f~~l~~  107 (637)
T 2zxi_A           28 FDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFKMLNT  107 (637)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEEEEEST
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhcccceeeccc
Confidence            4799999999999999999999999999997631 10                       00                  


Q ss_pred             -----------ccC-HHHHHHHHHHHHH-cCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351          246 -----------LFT-PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  308 (488)
Q Consensus       246 -----------~~~-~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~  308 (488)
                                 ..+ ..+...+.+.+++ .|++++ +..|+.+..+ ++++.+|.+.+|+++.+|.||+|+|..++
T Consensus       108 ~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~-~~~Vt~L~~e-~g~V~GV~t~dG~~i~AdaVVLATG~~s~  181 (637)
T 2zxi_A          108 RKGKAVQSPRAQADKKRYREYMKKVCENQENLYIK-QEEVVDIIVK-NNQVVGVRTNLGVEYKTKAVVVTTGTFLN  181 (637)
T ss_dssp             TSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ESCEEEEEES-SSBEEEEEETTSCEEECSEEEECCTTCBT
T ss_pred             ccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEE-EeEEEEEEec-CCEEEEEEECCCcEEEeCEEEEccCCCcc
Confidence                       000 1244556667777 599995 6789998754 56777899999999999999999998654

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=98.09  E-value=6.4e-06  Score=85.17  Aligned_cols=36  Identities=17%  Similarity=0.326  Sum_probs=33.2

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      +..+||+|||||++|+++|..|+++|.   +|+|+|+++
T Consensus        16 ~~~~DVvVIGgGi~Gl~~A~~La~~G~---~V~LlEk~d   51 (561)
T 3da1_A           16 EKQLDLLVIGGGITGAGIALDAQVRGI---QTGLVEMND   51 (561)
T ss_dssp             TSCEEEEEECCSHHHHHHHHHHHTTTC---CEEEEESSS
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCC---cEEEEECCC
Confidence            456899999999999999999999988   899999985

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.09  E-value=4.1e-06  Score=84.41  Aligned_cols=99  Identities=14%  Similarity=0.296  Sum_probs=72.6

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      ..++++|||||+.|+.+|..|++.|.   +|+++++.+...-.  .+.           ..+           .....+.
T Consensus       148 ~~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l~~--~~~-----------~~~-----------~~~l~~~  200 (452)
T 2cdu_A          148 KAKTITIIGSGYIGAELAEAYSNQNY---NVNLIDGHERVLYK--YFD-----------KEF-----------TDILAKD  200 (452)
T ss_dssp             GCSEEEEECCSHHHHHHHHHHHTTTC---EEEEEESSSSTTTT--TSC-----------HHH-----------HHHHHHH
T ss_pred             cCCeEEEECcCHHHHHHHHHHHhcCC---EEEEEEcCCchhhh--hhh-----------hhH-----------HHHHHHH
Confidence            35799999999999999999999876   89999987542100  000           000           1123566


Q ss_pred             HHHCCCeEEeCCcEEEEeCCCcEE--EeCCCcEEEeccEEeccCCCCC
Q 011351          130 YKEKGIEMIYQDPVTSIDIEKQTL--ITNSGKLLKYGSLIVATGCTAS  175 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~~v--~~~~g~~i~yd~lVlAtG~~~~  175 (488)
                      +++.|++++.+++|.+++.++..+  ...+|+++.+|.+|+|+|..|.
T Consensus       201 l~~~Gv~i~~~~~v~~i~~~~~~v~~v~~~g~~i~~D~vv~a~G~~p~  248 (452)
T 2cdu_A          201 YEAHGVNLVLGSKVAAFEEVDDEIITKTLDGKEIKSDIAILCIGFRPN  248 (452)
T ss_dssp             HHHTTCEEEESSCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEEC
T ss_pred             HHHCCCEEEcCCeeEEEEcCCCeEEEEEeCCCEEECCEEEECcCCCCC
Confidence            788999999999999998633322  2347788999999999998765

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=98.08  E-value=3.3e-06  Score=91.72  Aligned_cols=37  Identities=19%  Similarity=0.383  Sum_probs=32.3

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      +++||+|||||++|+++|++|++.|.  .+|+|||++..
T Consensus         3 ~~~dVvIIGgGi~Gls~A~~La~~G~--~~V~vlE~~~~   39 (830)
T 1pj5_A            3 STPRIVIIGAGIVGTNLADELVTRGW--NNITVLDQGPL   39 (830)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTTC--CCEEEECSSCT
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCC--CcEEEEeCCCC
Confidence            46899999999999999999999975  26999999864

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.08  E-value=6e-06  Score=83.95  Aligned_cols=98  Identities=20%  Similarity=0.343  Sum_probs=75.1

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      ..++++|||+|+.|+..|..|++.|.   +|+++++.+...   +.+..           .+           .....+.
T Consensus       190 ~~~~v~ViGgG~~g~e~A~~l~~~g~---~Vtli~~~~~~l---~~~~~-----------~~-----------~~~l~~~  241 (484)
T 3o0h_A          190 LPKSIVIVGGGYIGVEFANIFHGLGV---KTTLLHRGDLIL---RNFDY-----------DL-----------RQLLNDA  241 (484)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSS---TTSCH-----------HH-----------HHHHHHH
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHcCC---eEEEEECCCccc---cccCH-----------HH-----------HHHHHHH
Confidence            45799999999999999999999876   899999876421   00000           00           0123456


Q ss_pred             HHHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCCC
Q 011351          130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  175 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~~  175 (488)
                      +++.|++++.++.|.+++.++.  .+++.+|+++.+|.+|+|+|..|.
T Consensus       242 l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G~~p~  289 (484)
T 3o0h_A          242 MVAKGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRVPN  289 (484)
T ss_dssp             HHHHTCEEESSCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEEC
T ss_pred             HHHCCCEEEeCCEEEEEEeeCCEEEEEECCCcEEEcCEEEEeeCCCcC
Confidence            6778999999999999987543  678888988999999999998765

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.08  E-value=2.7e-06  Score=86.22  Aligned_cols=98  Identities=15%  Similarity=0.308  Sum_probs=73.2

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      ..++++|||||+.|+.+|..|++.|.   +|+|+++.+...   +.+..           .+           .....+.
T Consensus       176 ~~~~vvViGgG~~g~e~A~~l~~~g~---~Vtli~~~~~~l---~~~~~-----------~~-----------~~~l~~~  227 (470)
T 1dxl_A          176 IPKKLVVIGAGYIGLEMGSVWGRIGS---EVTVVEFASEIV---PTMDA-----------EI-----------RKQFQRS  227 (470)
T ss_dssp             CCSEEEESCCSHHHHHHHHHHHHHTC---EEEEECSSSSSS---TTSCH-----------HH-----------HHHHHHH
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCC---cEEEEEcCCccc---ccccH-----------HH-----------HHHHHHH
Confidence            35799999999999999999999986   899999876421   00000           00           0123566


Q ss_pred             HHHCCCeEEeCCcEEEEeCCCc--EEEeC---CC--cEEEeccEEeccCCCCC
Q 011351          130 YKEKGIEMIYQDPVTSIDIEKQ--TLITN---SG--KLLKYGSLIVATGCTAS  175 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~---~g--~~i~yd~lVlAtG~~~~  175 (488)
                      +++.|++++.+++|.+++.+..  .+.+.   +|  +++.+|.+|+|+|..|.
T Consensus       228 l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~  280 (470)
T 1dxl_A          228 LEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPF  280 (470)
T ss_dssp             HHHSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCCCEEEC
T ss_pred             HHHcCCEEEeCCEEEEEEEcCCeEEEEEEecCCCcceEEECCEEEECCCCCcC
Confidence            7889999999999999987653  44543   44  67999999999998775

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.07  E-value=1.2e-05  Score=76.34  Aligned_cols=99  Identities=15%  Similarity=0.203  Sum_probs=73.8

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEE-EecCCcC------------ccc----ccCHHHHHHHHHHHHHcCcEEEcC
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTI-IFPENHL------------LQR----LFTPSLAQRYEQLYQQNGVKFVKG  269 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~l-v~~~~~~------------l~~----~~~~~~~~~~~~~l~~~GV~v~~~  269 (488)
                      .++|+|||+|+.|+.+|..|++.|.+|++ +++. .+            .+.    ....++...+.+.+++.|++++.+
T Consensus         4 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~~-~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   82 (315)
T 3r9u_A            4 MLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKG-MPGGQITSSSEIENYPGVAQVMDGISFMAPWSEQCMRFGLKHEMV   82 (315)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHTCSCEEEECSS-STTGGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHTTTCCEEECC
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCCeEEEEeCC-CCCceeeeeceeccCCCCCCCCCHHHHHHHHHHHHHHcCcEEEEE
Confidence            35799999999999999999999999999 8873 21            011    012467788888888999999998


Q ss_pred             CeEEEEEeCCC-CcEEEE-EeCCCcEEEcCEEEEeecCccCCh
Q 011351          270 ASIKNLEAGSD-GRVAAV-KLEDGSTIDADTIVIGIGAKPTVS  310 (488)
Q Consensus       270 ~~v~~i~~~~~-~~v~~v-~l~~g~~i~~D~vi~a~G~~p~~~  310 (488)
                       ++..+ .+++ +.. .+ ...++ ++.+|.+|+|+|.+|...
T Consensus        83 -~v~~i-~~~~~~~~-~v~~~~~~-~~~~d~lvlAtG~~~~~~  121 (315)
T 3r9u_A           83 -GVEQI-LKNSDGSF-TIKLEGGK-TELAKAVIVCTGSAPKKA  121 (315)
T ss_dssp             -CEEEE-EECTTSCE-EEEETTSC-EEEEEEEEECCCEEECCC
T ss_pred             -EEEEE-ecCCCCcE-EEEEecCC-EEEeCEEEEeeCCCCCCC
Confidence             78888 4331 222 32 22344 899999999999987643

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=98.07  E-value=2.5e-05  Score=77.24  Aligned_cols=99  Identities=15%  Similarity=0.153  Sum_probs=73.0

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc------ccCHHHH------------------------------
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------LFTPSLA------------------------------  252 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~------~~~~~~~------------------------------  252 (488)
                      +|+|||+|+.|+-+|..|++.|.+|+++++.+.+...      .+.+...                              
T Consensus         3 ~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~~~~~~G~~i~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~   82 (412)
T 4hb9_A            3 HVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAASSILPGYGIHINSFGKQALQECLPAENWLAFEEASRYIGGQSRFYN   82 (412)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCSSCCCCEEEECHHHHHHHHHHSCHHHHHHHHHHCEEECCCCEEEC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCCCcCCCceEEeeCHHHHHHHHHcCChHHHHHhhhhhcccCcceeEec
Confidence            7999999999999999999999999999986543211      0111100                              


Q ss_pred             -----------------------------HHHHHHHHH-cCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEe
Q 011351          253 -----------------------------QRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG  302 (488)
Q Consensus       253 -----------------------------~~~~~~l~~-~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a  302 (488)
                                                   ..+.+.|.+ .+..++++++++.++..+++.+ .+.++||+++.+|+||-|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~v~~~~~v~~~~~~~~~~v-~v~~~dG~~~~adlvVgA  161 (412)
T 4hb9_A           83 ERMRLLAVHGGISPMAGKIISEQRLSISRTELKEILNKGLANTIQWNKTFVRYEHIENGGI-KIFFADGSHENVDVLVGA  161 (412)
T ss_dssp             TTSCEEEC--------------CEEEEEHHHHHHHHHTTCTTTEECSCCEEEEEECTTSCE-EEEETTSCEEEESEEEEC
T ss_pred             CCcceecccCCccccccccccccceEeeHHHHHHHHHhhccceEEEEEEEEeeeEcCCCeE-EEEECCCCEEEeeEEEEC
Confidence                                         112233322 3556889999999987666655 689999999999999999


Q ss_pred             ecCccC
Q 011351          303 IGAKPT  308 (488)
Q Consensus       303 ~G~~p~  308 (488)
                      -|....
T Consensus       162 DG~~S~  167 (412)
T 4hb9_A          162 DGSNSK  167 (412)
T ss_dssp             CCTTCH
T ss_pred             CCCCcc
Confidence            998753

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=98.06  E-value=4.6e-06  Score=87.57  Aligned_cols=36  Identities=22%  Similarity=0.278  Sum_probs=32.4

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      ..+||||||||.||++||.+|++.|.   +|+|||+.+.
T Consensus         4 ~~~DVvVIGgG~AGL~AAl~aae~G~---~V~vlEK~~~   39 (660)
T 2bs2_A            4 QYCDSLVIGGGLAGLRAAVATQQKGL---STIVLSLIPV   39 (660)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHTTTC---CEEEECSSCG
T ss_pred             ccccEEEECchHHHHHHHHHHHHCCC---cEEEEeccCC
Confidence            35799999999999999999999987   8999999763

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=98.06  E-value=5.9e-06  Score=86.68  Aligned_cols=36  Identities=25%  Similarity=0.364  Sum_probs=32.0

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHc------CCCCCcEEEEcCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEH------GMADGRLCIVSKEAY   88 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~------g~~~~~V~lie~~~~   88 (488)
                      .++||||||||+||++||.+|++.      |.   +|+||||...
T Consensus        21 ~~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~---~V~vleK~~~   62 (662)
T 3gyx_A           21 HSVDLLMVGGGMGNCGAAFEAVRWADKYAPEA---KILLVDKASL   62 (662)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHHHHCTTC---CEEEECSSCT
T ss_pred             EEcCEEEECCCHHHHHHHHHHHhhccccCCCC---cEEEEEecCC
Confidence            357999999999999999999997      76   8999999753

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.05  E-value=3.9e-06  Score=85.24  Aligned_cols=97  Identities=18%  Similarity=0.270  Sum_probs=72.3

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      ..++|+|||||+.|+.+|..|++.|.   +|+++++.+...   +.+.           ..+           .....+.
T Consensus       185 ~~~~vvViGgG~~g~e~A~~l~~~g~---~Vtlv~~~~~~l---~~~~-----------~~~-----------~~~l~~~  236 (480)
T 3cgb_A          185 KVEDVTIIGGGAIGLEMAETFVELGK---KVRMIERNDHIG---TIYD-----------GDM-----------AEYIYKE  236 (480)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHTTC---EEEEECCGGGTT---SSSC-----------HHH-----------HHHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCC---eEEEEEeCCchh---hcCC-----------HHH-----------HHHHHHH
Confidence            46899999999999999999999886   899999875421   0000           000           1123556


Q ss_pred             HHHCCCeEEeCCcEEEEeCCCcE--EEeCCCcEEEeccEEeccCCCCC
Q 011351          130 YKEKGIEMIYQDPVTSIDIEKQT--LITNSGKLLKYGSLIVATGCTAS  175 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~~--v~~~~g~~i~yd~lVlAtG~~~~  175 (488)
                      +++.|++++.++.|.+++.+++.  +.++ +.++.+|.||+|+|..|.
T Consensus       237 l~~~Gv~i~~~~~v~~i~~~~~v~~v~~~-~~~i~~D~vi~a~G~~p~  283 (480)
T 3cgb_A          237 ADKHHIEILTNENVKAFKGNERVEAVETD-KGTYKADLVLVSVGVKPN  283 (480)
T ss_dssp             HHHTTCEEECSCCEEEEEESSBEEEEEET-TEEEECSEEEECSCEEES
T ss_pred             HHHcCcEEEcCCEEEEEEcCCcEEEEEEC-CCEEEcCEEEECcCCCcC
Confidence            77899999999999999876542  4454 457999999999998765

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.05  E-value=9.4e-06  Score=82.20  Aligned_cols=101  Identities=21%  Similarity=0.297  Sum_probs=63.9

Q ss_pred             CeEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCcCc------ccccC------HHH-------HHHHHHHHHHcCcEE
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLL------QRLFT------PSL-------AQRYEQLYQQNGVKF  266 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~--g~~v~lv~~~~~~l------~~~~~------~~~-------~~~~~~~l~~~GV~v  266 (488)
                      ++|+|||+|+.|+.+|..|++.  +.+|+++++.+.+.      +..+.      ..+       ........++.|+++
T Consensus         4 ~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~   83 (472)
T 3iwa_A            4 KHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCGIPYYVSGEVSNIESLQATPYNVVRDPEFFRINKDVEA   83 (472)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC-------------------------------------------CEE
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcccccccccchhhcCCCCchHHhccccchhccCHHHHhhhcCcEE
Confidence            6899999999999999999988  88999999987631      11111      111       112222223579999


Q ss_pred             EcCCeEEEEEeCCCCcEEEEE-eCCCc--EEEcCEEEEeecCccCCh
Q 011351          267 VKGASIKNLEAGSDGRVAAVK-LEDGS--TIDADTIVIGIGAKPTVS  310 (488)
Q Consensus       267 ~~~~~v~~i~~~~~~~v~~v~-l~~g~--~i~~D~vi~a~G~~p~~~  310 (488)
                      ++++++++++.. ...+ .+. +.+|+  ++.+|.+|+|||.+|...
T Consensus        84 ~~~~~V~~id~~-~~~v-~~~~~~~g~~~~~~~d~lviAtG~~p~~p  128 (472)
T 3iwa_A           84 LVETRAHAIDRA-AHTV-EIENLRTGERRTLKYDKLVLALGSKANRP  128 (472)
T ss_dssp             ECSEEEEEEETT-TTEE-EEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred             EECCEEEEEECC-CCEE-EEeecCCCCEEEEECCEEEEeCCCCcCCC
Confidence            999999999853 3333 233 23465  799999999999988643

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.05  E-value=5.9e-06  Score=85.72  Aligned_cols=98  Identities=15%  Similarity=0.286  Sum_probs=73.8

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      ..++|+|||||+.|+.+|..|++.|.   +|+++++.+...   +....           .+           .....+.
T Consensus       150 ~~~~vvViGgG~~g~e~A~~l~~~g~---~Vtlv~~~~~~l---~~~~~-----------~~-----------~~~l~~~  201 (565)
T 3ntd_A          150 NVEHATVVGGGFIGLEMMESLHHLGI---KTTLLELADQVM---TPVDR-----------EM-----------AGFAHQA  201 (565)
T ss_dssp             TCSEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSSC---TTSCH-----------HH-----------HHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCC---cEEEEEcCCccc---hhcCH-----------HH-----------HHHHHHH
Confidence            35699999999999999999999986   899999875420   00000           00           0123456


Q ss_pred             HHHCCCeEEeCCcEEEEeC-------------------CCc--EEEeCCCcEEEeccEEeccCCCCC
Q 011351          130 YKEKGIEMIYQDPVTSIDI-------------------EKQ--TLITNSGKLLKYGSLIVATGCTAS  175 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~-------------------~~~--~v~~~~g~~i~yd~lVlAtG~~~~  175 (488)
                      +++.|++++.++.|.+++.                   ...  .+++.+|+++.+|.+|+|+|..|.
T Consensus       202 l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  268 (565)
T 3ntd_A          202 IRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPE  268 (565)
T ss_dssp             HHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEETTSCEEEESEEEECSCEEEC
T ss_pred             HHHCCCEEEeCCeEEEEeccccccccccccccccccccCCCcEEEEEcCCCEEEcCEEEECcCCccc
Confidence            7889999999999999876                   222  566788889999999999998765

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.05  E-value=2.4e-05  Score=78.80  Aligned_cols=100  Identities=20%  Similarity=0.210  Sum_probs=77.3

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc------c------------------------------------
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------R------------------------------------  245 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~------~------------------------------------  245 (488)
                      ..|+|||+|+.|+-+|..|++.|.+|+++++.+.+..      .                                    
T Consensus         7 ~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~~   86 (453)
T 3atr_A            7 YDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIKLYSPDMQT   86 (453)
T ss_dssp             CSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEEEEEEEEECTTSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhhhcceEEECCCCce
Confidence            4699999999999999999999999999998753210      0                                    


Q ss_pred             ---------ccC-HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC---CCc--EEEcCEEEEeecCccC
Q 011351          246 ---------LFT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGAKPT  308 (488)
Q Consensus       246 ---------~~~-~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~---~g~--~i~~D~vi~a~G~~p~  308 (488)
                               .++ ..+.+.+.+.+++.|++++++++|+++..+ ++.+.+|.+.   +|+  ++.+|.||.|+|....
T Consensus        87 ~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~-~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s~  163 (453)
T 3atr_A           87 VWTVNGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFE-DGYVKGAVLFNRRTNEELTVYSKVVVEATGYSRS  163 (453)
T ss_dssp             EEEEEEEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEE-TTEEEEEEEEETTTTEEEEEECSEEEECCGGGCT
T ss_pred             EEeECCCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEE-CCEEEEEEEEEcCCCceEEEEcCEEEECcCCchh
Confidence                     000 235566777777889999999999999864 4555555554   676  7999999999998765

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=98.04  E-value=4.6e-05  Score=79.11  Aligned_cols=101  Identities=20%  Similarity=0.282  Sum_probs=79.0

Q ss_pred             CeEEEECCCHHHHHHHHHHHhC------CCcEEEEecCCcCccc------------------------------------
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGW------KLDTTIIFPENHLLQR------------------------------------  245 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~------g~~v~lv~~~~~~l~~------------------------------------  245 (488)
                      -.|+|||+|+.|+-+|..|++.      |.+|+++++.+.+-..                                    
T Consensus        36 ~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~l~~~~l~~ll~~~~~~g~~~~~~~~~~~~~  115 (584)
T 2gmh_A           36 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRFG  115 (584)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCEEEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCccccccccCHHHHHHHHHHHHhcCCceeeeechhhee
Confidence            4699999999999999999998      9999999976432100                                    


Q ss_pred             --------cc---C--------------HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC------CC---
Q 011351          246 --------LF---T--------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE------DG---  291 (488)
Q Consensus       246 --------~~---~--------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~------~g---  291 (488)
                              .+   +              ..+.+.+.+.+++.||++++++.++++..++++.+.+|.+.      +|   
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~  195 (584)
T 2gmh_A          116 ILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPK  195 (584)
T ss_dssp             EECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEE
T ss_pred             eeccCCCccccccCccccccCCCEEEeHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcc
Confidence                    00   0              13456677778888999999999999987666777677776      33   


Q ss_pred             ------cEEEcCEEEEeecCccC
Q 011351          292 ------STIDADTIVIGIGAKPT  308 (488)
Q Consensus       292 ------~~i~~D~vi~a~G~~p~  308 (488)
                            .++.+|.||.|.|....
T Consensus       196 ~~~~~g~~i~Ad~VV~AdG~~S~  218 (584)
T 2gmh_A          196 TTFERGLELHAKVTIFAEGCHGH  218 (584)
T ss_dssp             EEEECCCEEECSEEEECCCTTCH
T ss_pred             cccCCceEEECCEEEEeeCCCch
Confidence                  67999999999999864

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.02  E-value=6.1e-06  Score=84.03  Aligned_cols=97  Identities=14%  Similarity=0.173  Sum_probs=70.6

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      ..++++|||||+.|+.+|..|++.|.   +|+++++.+...   +....           .+           .....+.
T Consensus       173 ~~k~vvViGgG~ig~E~A~~l~~~g~---~Vtlv~~~~~~l---~~~d~-----------~~-----------~~~l~~~  224 (492)
T 3ic9_A          173 LPKSVAVFGPGVIGLELGQALSRLGV---IVKVFGRSGSVA---NLQDE-----------EM-----------KRYAEKT  224 (492)
T ss_dssp             CCSEEEEESSCHHHHHHHHHHHHTTC---EEEEECCTTCCT---TCCCH-----------HH-----------HHHHHHH
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCC---eEEEEEECCccc---ccCCH-----------HH-----------HHHHHHH
Confidence            46799999999999999999999986   899999876521   10000           00           0122344


Q ss_pred             HHHCCCeEEeCCcEEEEeCCCc--EEEeC--CC--cEEEeccEEeccCCCCC
Q 011351          130 YKEKGIEMIYQDPVTSIDIEKQ--TLITN--SG--KLLKYGSLIVATGCTAS  175 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~--~g--~~i~yd~lVlAtG~~~~  175 (488)
                      +++. ++++.++.|..+..++.  .+++.  +|  +++.+|.+|+|+|..|.
T Consensus       225 l~~~-V~i~~~~~v~~i~~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~p~  275 (492)
T 3ic9_A          225 FNEE-FYFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGRKAN  275 (492)
T ss_dssp             HHTT-SEEETTCEEEEEEECSSSEEEEEECTTCCEEEEEESEEEECSCCEES
T ss_pred             HhhC-cEEEECCEEEEEEEcCCEEEEEEEeCCCceEEEECCEEEEeeCCccC
Confidence            5556 99999999999976543  45553  67  67999999999998775

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.01  E-value=6.6e-06  Score=83.21  Aligned_cols=96  Identities=18%  Similarity=0.269  Sum_probs=72.8

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      ..++++|||||+.|+.+|..|++.|.   +|+++++.+...   | ...           .+           .....+.
T Consensus       175 ~~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l---~-~~~-----------~~-----------~~~l~~~  225 (467)
T 1zk7_A          175 IPERLAVIGSSVVALELAQAFARLGS---KVTVLARNTLFF---R-EDP-----------AI-----------GEAVTAA  225 (467)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSCTTT---T-SCH-----------HH-----------HHHHHHH
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHcCC---EEEEEEECCccC---C-CCH-----------HH-----------HHHHHHH
Confidence            35799999999999999999999986   899999875420   0 100           00           1234566


Q ss_pred             HHHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCCC
Q 011351          130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  175 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~~  175 (488)
                      +++.|++++.+++|.+++.++.  .+.++ +.++.+|.+|+|+|..|.
T Consensus       226 l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~-~~~i~aD~Vv~a~G~~p~  272 (467)
T 1zk7_A          226 FRAEGIEVLEHTQASQVAHMDGEFVLTTT-HGELRADKLLVATGRTPN  272 (467)
T ss_dssp             HHHTTCEEETTCCEEEEEEETTEEEEEET-TEEEEESEEEECSCEEES
T ss_pred             HHhCCCEEEcCCEEEEEEEeCCEEEEEEC-CcEEEcCEEEECCCCCcC
Confidence            7889999999999999986554  35555 557999999999998765

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.01  E-value=3.9e-05  Score=72.95  Aligned_cols=98  Identities=19%  Similarity=0.230  Sum_probs=73.4

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc---Cc--------c---cccCHHHHHHHHHHHHHcCcEEEcCCeEEE
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH---LL--------Q---RLFTPSLAQRYEQLYQQNGVKFVKGASIKN  274 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~---~l--------~---~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~  274 (488)
                      .|+|||+|+.|+.+|..|+++|.+|+++++...   ++        +   ....+++.........+.+..+..+.....
T Consensus         8 DvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~~gG~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (312)
T 4gcm_A            8 DIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSV   87 (312)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGGGGGCSCBCCSTTCSSBCHHHHHHHHHHHHHHTTCEEEECCCCEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCeeecccccCCcCCccccchHHHHHHHHHHHhhccccccceeeeee
Confidence            589999999999999999999999999987521   11        0   011245666777777888888888876666


Q ss_pred             EEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCCh
Q 011351          275 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  310 (488)
Q Consensus       275 i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~  310 (488)
                      .... ..   .+...+++++.+|.+|+|||.+|...
T Consensus        88 ~~~~-~~---~~~~~~~~~~~~d~liiAtGs~~~~~  119 (312)
T 4gcm_A           88 EDKG-EY---KVINFGNKELTAKAVIIATGAEYKKI  119 (312)
T ss_dssp             EECS-SC---EEEECSSCEEEEEEEEECCCEEECCC
T ss_pred             eeee-cc---eeeccCCeEEEeceeEEcccCccCcC
Confidence            5532 22   34567788999999999999988643

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.00  E-value=3.3e-05  Score=79.87  Aligned_cols=101  Identities=18%  Similarity=0.303  Sum_probs=76.2

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc-Cc-----------------------cc----------------
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH-LL-----------------------QR----------------  245 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~-~l-----------------------~~----------------  245 (488)
                      ..-.|+|||+|..|+++|..+++.|.+|+++++.+. +-                       ..                
T Consensus        20 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~gi~f~~l   99 (641)
T 3cp8_A           20 HMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDATGIQFRML   99 (641)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHEEEEEEE
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHhcCCchhhc
Confidence            345799999999999999999999999999997631 10                       00                


Q ss_pred             -------------ccCH-HHHHHHHHHHHH-cCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351          246 -------------LFTP-SLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  308 (488)
Q Consensus       246 -------------~~~~-~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~  308 (488)
                                   ..+. .+...+.+.+++ .|++++.+ .++.+..+ ++.+.+|.+.+|+++.+|.||+|+|..++
T Consensus       100 ~~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~~-~V~~L~~d-~g~V~GV~t~~G~~i~Ad~VVLATG~~s~  175 (641)
T 3cp8_A          100 NRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQD-TVIGVSAN-SGKFSSVTVRSGRAIQAKAAILACGTFLN  175 (641)
T ss_dssp             CSSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEEEC-CEEEEEEE-TTEEEEEEETTSCEEEEEEEEECCTTCBT
T ss_pred             ccccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEEee-EEEEEEec-CCEEEEEEECCCcEEEeCEEEECcCCCCC
Confidence                         0111 345566667777 49999654 78888753 56677788999999999999999998754

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=97.99  E-value=4e-05  Score=79.50  Aligned_cols=100  Identities=16%  Similarity=0.223  Sum_probs=77.7

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc-----------------------------------------
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----------------------------------------  245 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~-----------------------------------------  245 (488)
                      ...|+|||||+.|+-+|..|++.|.+|+++++.+..-..                                         
T Consensus        23 ~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~~~~G~~l~p~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~  102 (591)
T 3i3l_A           23 RSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVGESLLPGTMSILNRLGLQEKIDAQNYVKKPSATFLWGQDQ  102 (591)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCCCCCCBCCHHHHHHHHHTTCHHHHHHHCCEEECEEEEECSSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCCCceeeeECHHHHHHHHHcCCcHHHHhcCCcccCCcEEEecCCC
Confidence            468999999999999999999999999999986211000                                         


Q ss_pred             ---------------------ccC-HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC-CC--cEEEcCEEE
Q 011351          246 ---------------------LFT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DG--STIDADTIV  300 (488)
Q Consensus       246 ---------------------~~~-~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~-~g--~~i~~D~vi  300 (488)
                                           .++ ..+...+.+.+++.|++++.+++|+++... ++.+..|.+. +|  +++.+|.||
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~-~g~~~~V~~~~~G~~~~i~AdlVV  181 (591)
T 3i3l_A          103 APWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDLS-DPDRVVLTVRRGGESVTVESDFVI  181 (591)
T ss_dssp             CCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECC-STTCEEEEEEETTEEEEEEESEEE
T ss_pred             ccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCCEEEEEEecCCceEEEEcCEEE
Confidence                                 001 235566777788899999999999999854 3444567776 67  579999999


Q ss_pred             EeecCcc
Q 011351          301 IGIGAKP  307 (488)
Q Consensus       301 ~a~G~~p  307 (488)
                      .|+|...
T Consensus       182 ~AdG~~S  188 (591)
T 3i3l_A          182 DAGGSGG  188 (591)
T ss_dssp             ECCGGGC
T ss_pred             ECCCCcc
Confidence            9999865

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=97.99  E-value=1.1e-05  Score=76.72  Aligned_cols=37  Identities=22%  Similarity=0.469  Sum_probs=32.7

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHc--CCCCCcEEEEcCCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEH--GMADGRLCIVSKEAYA   89 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~--g~~~~~V~lie~~~~~   89 (488)
                      ..+||+|||||++|+++|..|++.  |.   +|+|+|+.+..
T Consensus        64 ~~~dv~IiG~G~aGl~aA~~la~~~~g~---~V~v~e~~~~~  102 (326)
T 2gjc_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDL---KVCIIESSVAP  102 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTS---CEEEECSSSSC
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCC---eEEEEecCccc
Confidence            346999999999999999999998  65   89999998754

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=97.98  E-value=8.7e-06  Score=82.23  Aligned_cols=97  Identities=19%  Similarity=0.300  Sum_probs=74.2

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      ..++++|||||+.|+..|..|++.|.   +|+++++.+...   +.+..           .+           .....+.
T Consensus       169 ~~~~v~ViGgG~~g~e~A~~l~~~g~---~Vt~v~~~~~~l---~~~~~-----------~~-----------~~~l~~~  220 (463)
T 4dna_A          169 LPESILIAGGGYIAVEFANIFHGLGV---KTTLIYRGKEIL---SRFDQ-----------DM-----------RRGLHAA  220 (463)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSS---TTSCH-----------HH-----------HHHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCC---eEEEEEcCCccc---cccCH-----------HH-----------HHHHHHH
Confidence            46799999999999999999999876   899999876421   00000           00           1223456


Q ss_pred             HHHCCCeEEeCCcEEEEeCCC-c--EEE-eCCCcEEEeccEEeccCCCCC
Q 011351          130 YKEKGIEMIYQDPVTSIDIEK-Q--TLI-TNSGKLLKYGSLIVATGCTAS  175 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~-~--~v~-~~~g~~i~yd~lVlAtG~~~~  175 (488)
                      +++.|++++.++.|.+++.+. .  .|+ +.+|+ +.+|.+|+|+|..|.
T Consensus       221 l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~g~-i~aD~Vv~a~G~~p~  269 (463)
T 4dna_A          221 MEEKGIRILCEDIIQSVSADADGRRVATTMKHGE-IVADQVMLALGRMPN  269 (463)
T ss_dssp             HHHTTCEEECSCCEEEEEECTTSCEEEEESSSCE-EEESEEEECSCEEES
T ss_pred             HHHCCCEEECCCEEEEEEEcCCCEEEEEEcCCCe-EEeCEEEEeeCcccC
Confidence            788999999999999998753 2  677 78888 999999999998765

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=97.98  E-value=5.2e-05  Score=77.51  Aligned_cols=100  Identities=18%  Similarity=0.206  Sum_probs=75.9

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc--------Cccc----------------------------------
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH--------LLQR----------------------------------  245 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~--------~l~~----------------------------------  245 (488)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.+.        +.+.                                  
T Consensus         8 ~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~   87 (512)
T 3e1t_A            8 FDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGTFRWGKEP   87 (512)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCHHHHTTHHHHTTCHHHHHTTTCCEECEEEEECSSCS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCCCCCCCcccCcchHHHHHHHhCcHHHHHHcCCccccCceEEecCCc
Confidence            4799999999999999999999999999998741        0000                                  


Q ss_pred             -------------------ccC-HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEE--eCCCc--EEEcCEEEE
Q 011351          246 -------------------LFT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK--LEDGS--TIDADTIVI  301 (488)
Q Consensus       246 -------------------~~~-~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~--l~~g~--~i~~D~vi~  301 (488)
                                         .++ ..+...+.+.+++.|++++.+++|+++... ++.+.+|.  ..+|+  ++.+|.||.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~-~~~v~gv~~~~~dG~~~~i~ad~VI~  166 (512)
T 3e1t_A           88 EPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGVDVRERHEVIDVLFE-GERAVGVRYRNTEGVELMAHARFIVD  166 (512)
T ss_dssp             SCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEE-TTEEEEEEEECSSSCEEEEEEEEEEE
T ss_pred             cccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEE-CCEEEEEEEEeCCCCEEEEEcCEEEE
Confidence                               000 234556677778899999999999999864 55554444  45674  799999999


Q ss_pred             eecCccC
Q 011351          302 GIGAKPT  308 (488)
Q Consensus       302 a~G~~p~  308 (488)
                      |+|....
T Consensus       167 AdG~~S~  173 (512)
T 3e1t_A          167 ASGNRTR  173 (512)
T ss_dssp             CCCTTCS
T ss_pred             CCCcchH
Confidence            9998753

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=97.98  E-value=8.5e-06  Score=82.63  Aligned_cols=100  Identities=16%  Similarity=0.288  Sum_probs=73.8

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHh
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (488)
                      ...++++|||||+.|+.+|..|++.|.   +|+++++.+...   +...           ..+           .....+
T Consensus       178 ~~~~~v~ViGgG~~g~e~A~~l~~~g~---~Vtlv~~~~~~l---~~~~-----------~~~-----------~~~l~~  229 (476)
T 3lad_A          178 NVPGKLGVIGAGVIGLELGSVWARLGA---EVTVLEAMDKFL---PAVD-----------EQV-----------AKEAQK  229 (476)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSSS---TTSC-----------HHH-----------HHHHHH
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHcCC---cEEEEecCCCcC---cccC-----------HHH-----------HHHHHH
Confidence            345799999999999999999999876   899999876421   0000           000           122355


Q ss_pred             HHHHCCCeEEeCCcEEEEeCCCc--EEEeCCC---cEEEeccEEeccCCCCCc
Q 011351          129 WYKEKGIEMIYQDPVTSIDIEKQ--TLITNSG---KLLKYGSLIVATGCTASR  176 (488)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g---~~i~yd~lVlAtG~~~~~  176 (488)
                      .+++.|++++.++.|.+++.+..  .+++.++   +++.+|.+|+|+|..|..
T Consensus       230 ~l~~~Gv~v~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~~p~~  282 (476)
T 3lad_A          230 ILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVT  282 (476)
T ss_dssp             HHHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSCEEECC
T ss_pred             HHHhCCCEEEECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEeeCCcccC
Confidence            67788999999999999986543  4556554   579999999999987653

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=97.97  E-value=5.8e-05  Score=73.64  Aligned_cols=54  Identities=17%  Similarity=0.294  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCcc
Q 011351          251 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  307 (488)
Q Consensus       251 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p  307 (488)
                      +...+.+.+++.|++++.+++|++++.+++ .+ .+.+.+|+ +.+|.||+|+|...
T Consensus       151 l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~-~~-~v~~~~g~-~~a~~vV~a~G~~s  204 (372)
T 2uzz_A          151 AIKTWIQLAKEAGCAQLFNCPVTAIRHDDD-GV-TIETADGE-YQAKKAIVCAGTWV  204 (372)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEECSS-SE-EEEESSCE-EEEEEEEECCGGGG
T ss_pred             HHHHHHHHHHHCCCEEEcCCEEEEEEEcCC-EE-EEEECCCe-EEcCEEEEcCCccH
Confidence            344556667788999999999999986543 33 57777775 99999999999764

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=97.97  E-value=4.2e-05  Score=73.84  Aligned_cols=95  Identities=18%  Similarity=0.198  Sum_probs=69.3

Q ss_pred             eEEEECCCHHHHHHHHHHHh---CCCcEEEEecCCcCcccc----------------------cCH---HH---------
Q 011351          209 KVVVVGGGYIGMEVAAAAVG---WKLDTTIIFPENHLLQRL----------------------FTP---SL---------  251 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~---~g~~v~lv~~~~~~l~~~----------------------~~~---~~---------  251 (488)
                      +|+|||+|..|+-+|..|++   .|.+|+++++.+.+-.+.                      .++   .+         
T Consensus         3 dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~   82 (342)
T 3qj4_A            3 QVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFYDELLA   82 (342)
T ss_dssp             EEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHHHHHHH
T ss_pred             cEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHHHHHHh
Confidence            69999999999999999999   899999999764321100                      000   11         


Q ss_pred             -----------------------------HHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEe
Q 011351          252 -----------------------------AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG  302 (488)
Q Consensus       252 -----------------------------~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a  302 (488)
                                                   ...++...++.|++++++++|++++..++ .+ .|.+.+|+++.+|.||+|
T Consensus        83 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~i~~~~~V~~i~~~~~-~~-~v~~~~g~~~~ad~vV~A  160 (342)
T 3qj4_A           83 YGVLRPLSSPIEGMVMKEGDCNFVAPQGISSIIKHYLKESGAEVYFRHRVTQINLRDD-KW-EVSKQTGSPEQFDLIVLT  160 (342)
T ss_dssp             TTSCEECCSCEETCCC--CCEEEECTTCTTHHHHHHHHHHTCEEESSCCEEEEEECSS-SE-EEEESSSCCEEESEEEEC
T ss_pred             CCCeecCchhhcceeccCCccceecCCCHHHHHHHHHHhcCCEEEeCCEEEEEEEcCC-EE-EEEECCCCEEEcCEEEEC
Confidence                                         11222333444899999999999987544 34 578888888999999999


Q ss_pred             ecC
Q 011351          303 IGA  305 (488)
Q Consensus       303 ~G~  305 (488)
                      ++.
T Consensus       161 ~p~  163 (342)
T 3qj4_A          161 MPV  163 (342)
T ss_dssp             SCH
T ss_pred             CCH
Confidence            874

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=97.95  E-value=8.1e-06  Score=83.11  Aligned_cols=99  Identities=17%  Similarity=0.249  Sum_probs=72.5

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHh
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (488)
                      ...++|+|||||+.|+.+|..|++.|.   +|+++++.+...   +...           ..+           .....+
T Consensus       196 ~~~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l---~~~d-----------~~~-----------~~~l~~  247 (491)
T 3urh_A          196 KVPASMIVVGGGVIGLELGSVWARLGA---KVTVVEFLDTIL---GGMD-----------GEV-----------AKQLQR  247 (491)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHHTC---EEEEECSSSSSS---SSSC-----------HHH-----------HHHHHH
T ss_pred             hcCCeEEEECCCHHHHHHHHHHHHcCC---EEEEEecccccc---ccCC-----------HHH-----------HHHHHH
Confidence            345799999999999999999999986   899999776421   0000           000           112355


Q ss_pred             HHHHCCCeEEeCCcEEEEeCCCc--EEEeCC---C--cEEEeccEEeccCCCCC
Q 011351          129 WYKEKGIEMIYQDPVTSIDIEKQ--TLITNS---G--KLLKYGSLIVATGCTAS  175 (488)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~~--~v~~~~---g--~~i~yd~lVlAtG~~~~  175 (488)
                      .+++.|++++.+++|.++..+..  .+.+.+   |  +++.+|.+|+|+|..|.
T Consensus       248 ~l~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~  301 (491)
T 3urh_A          248 MLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPS  301 (491)
T ss_dssp             HHHHTTCEEECSEEEEEEEEETTEEEEEEEETTSCCCEEEEESEEEECCCCEEC
T ss_pred             HHHhCCCEEEECCeEEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCCccC
Confidence            67788999999989999876553  344442   4  57999999999998765

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.94  E-value=1.4e-05  Score=81.39  Aligned_cols=101  Identities=18%  Similarity=0.258  Sum_probs=72.2

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCC-CCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMA-DGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~-~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      .++|+|||||+.|+.+|..|++.+.. ..+|+++++.+.. ..+      .+ +     ..+           .....+.
T Consensus       180 ~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~-~~~------~l-~-----~~~-----------~~~~~~~  235 (493)
T 1m6i_A          180 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGN-MGK------IL-P-----EYL-----------SNWTMEK  235 (493)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSST-TTT------TS-C-----HHH-----------HHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCccc-ccc------cC-C-----HHH-----------HHHHHHH
Confidence            57999999999999999999874210 2389999876431 000      00 0     000           0123456


Q ss_pred             HHHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCCC
Q 011351          130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  175 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~~  175 (488)
                      +++.|++++.++.|.+++.++.  .+++.+|+++.+|.+|+|+|..|.
T Consensus       236 l~~~GV~v~~~~~V~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~~pn  283 (493)
T 1m6i_A          236 VRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPN  283 (493)
T ss_dssp             HHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEEC
T ss_pred             HHhcCCEEEeCCEEEEEEecCCeEEEEECCCCEEECCEEEECCCCCcc
Confidence            7788999999999999976443  577889999999999999998765

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=97.93  E-value=7.3e-06  Score=82.38  Aligned_cols=90  Identities=14%  Similarity=0.194  Sum_probs=70.0

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcC-------ccc-ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL-------LQR-LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  277 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~-------l~~-~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~  277 (488)
                      ..++|+|||+|+.|+.+|..|++.|.+|+++++.+.+       ++. .++.++.....+.+++.||++++++.+.    
T Consensus       121 ~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~----  196 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLVYGIPGFKLEKSVVERRVKLLADAGVIYHPNFEVG----  196 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHHTTCEEETTCCBT----
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCcEEEeCCEec----
Confidence            3578999999999999999999999999999998764       121 1355677777888999999999997652    


Q ss_pred             CCCCcEEEEEeCCCcEEEcCEEEEeecCc
Q 011351          278 GSDGRVAAVKLEDGSTIDADTIVIGIGAK  306 (488)
Q Consensus       278 ~~~~~v~~v~l~~g~~i~~D~vi~a~G~~  306 (488)
                         .   .+.++++ .+.+|.||+|+|..
T Consensus       197 ---~---~v~~~~~-~~~~d~vvlAtG~~  218 (456)
T 2vdc_G          197 ---R---DASLPEL-RRKHVAVLVATGVY  218 (456)
T ss_dssp             ---T---TBCHHHH-HSSCSEEEECCCCC
T ss_pred             ---c---EEEhhHh-HhhCCEEEEecCCC
Confidence               0   1223333 26799999999986

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=97.93  E-value=5.2e-05  Score=75.08  Aligned_cols=100  Identities=20%  Similarity=0.301  Sum_probs=74.4

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc----------------------------------------
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------------------------------------  245 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~----------------------------------------  245 (488)
                      +..+|+|||+|+.|+-+|..|++.|.+|+++++.+.+...                                        
T Consensus        22 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~  101 (407)
T 3rp8_A           22 GHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAYRDFRS  101 (407)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHSCCCCEEEEEETTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhcCCCcceEEEECCC
Confidence            3468999999999999999999999999999987532100                                        


Q ss_pred             -----ccC-----------------HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEee
Q 011351          246 -----LFT-----------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGI  303 (488)
Q Consensus       246 -----~~~-----------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~  303 (488)
                           .++                 ..+.+.+.+.+++  ++++++++|++++..++ .+ .+.+.+|+++.+|+||.|.
T Consensus       102 g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~-~v-~v~~~~g~~~~a~~vV~Ad  177 (407)
T 3rp8_A          102 GENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGR--DSVQFGKRVTRCEEDAD-GV-TVWFTDGSSASGDLLIAAD  177 (407)
T ss_dssp             CCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCG--GGEEESCCEEEEEEETT-EE-EEEETTSCEEEESEEEECC
T ss_pred             CCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCc--CEEEECCEEEEEEecCC-cE-EEEEcCCCEEeeCEEEECC
Confidence                 000                 1233344444444  88999999999987543 33 5888999999999999999


Q ss_pred             cCccCC
Q 011351          304 GAKPTV  309 (488)
Q Consensus       304 G~~p~~  309 (488)
                      |.....
T Consensus       178 G~~S~v  183 (407)
T 3rp8_A          178 GSHSAL  183 (407)
T ss_dssp             CTTCSS
T ss_pred             CcChHH
Confidence            987654

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=97.92  E-value=9.4e-06  Score=82.45  Aligned_cols=97  Identities=13%  Similarity=0.169  Sum_probs=70.7

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      ..++++|||||+.|+.+|..|++.|.   +|+++++....    +.+..           .+           .....+.
T Consensus       186 ~~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~l----~~~d~-----------~~-----------~~~l~~~  236 (483)
T 3dgh_A          186 EPGKTLVVGAGYIGLECAGFLKGLGY---EPTVMVRSIVL----RGFDQ-----------QM-----------AELVAAS  236 (483)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSCSS----TTSCH-----------HH-----------HHHHHHH
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCC---EEEEEeCCCCC----cccCH-----------HH-----------HHHHHHH
Confidence            35789999999999999999999876   89999864211    00000           00           1123566


Q ss_pred             HHHCCCeEEeCCcEEEEeCCC---cEEEeCCCc-----EEEeccEEeccCCCCC
Q 011351          130 YKEKGIEMIYQDPVTSIDIEK---QTLITNSGK-----LLKYGSLIVATGCTAS  175 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~---~~v~~~~g~-----~i~yd~lVlAtG~~~~  175 (488)
                      +++.|++++.++.|.+++...   ..+++.++.     ++.+|.+++|+|..|.
T Consensus       237 l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~p~  290 (483)
T 3dgh_A          237 MEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGL  290 (483)
T ss_dssp             HHHTTCCEEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCEEEC
T ss_pred             HHhCCCEEEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECcccccC
Confidence            788899999998999987632   246665543     6899999999998765

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=97.91  E-value=3.6e-05  Score=76.05  Aligned_cols=100  Identities=18%  Similarity=0.300  Sum_probs=71.8

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc----c--cCH-H---H-------------------------
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----L--FTP-S---L-------------------------  251 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~----~--~~~-~---~-------------------------  251 (488)
                      ..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+..+    .  +.+ .   +                         
T Consensus        26 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~  105 (398)
T 2xdo_A           26 DKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGVNIADEK  105 (398)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHHHCBCCCEEEECSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHHhhcccceEEECCC
Confidence            468999999999999999999999999999987543211    0  000 0   0                         


Q ss_pred             ---------------------HHHHHHHHHHc--CcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351          252 ---------------------AQRYEQLYQQN--GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  308 (488)
Q Consensus       252 ---------------------~~~~~~~l~~~--GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~  308 (488)
                                           ...+.+.|.+.  +++++++++|++++.++ +.+ .+.+.+|+++.+|.||.|.|....
T Consensus       106 g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~-~~v-~v~~~~g~~~~ad~vV~AdG~~S~  183 (398)
T 2xdo_A          106 GNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIWDRKLVMLEPGK-KKW-TLTFENKPSETADLVILANGGMSK  183 (398)
T ss_dssp             SEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSCTTSEEESCCEEEEEECS-SSE-EEEETTSCCEEESEEEECSCTTCS
T ss_pred             CCchhhccccccCCCCCceECHHHHHHHHHhhcCCCEEEECCEEEEEEECC-CEE-EEEECCCcEEecCEEEECCCcchh
Confidence                                 01122222221  35789999999998654 334 578889988999999999998765

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=97.90  E-value=9.3e-06  Score=82.39  Aligned_cols=99  Identities=16%  Similarity=0.180  Sum_probs=72.2

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      ..++++|||||+.|+.+|..|++.|.   +|+++++.+...   +....           .+           .....+.
T Consensus       186 ~~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l---~~~d~-----------~~-----------~~~~~~~  237 (478)
T 3dk9_A          186 LPGRSVIVGAGYIAVEMAGILSALGS---KTSLMIRHDKVL---RSFDS-----------MI-----------STNCTEE  237 (478)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSC---TTSCH-----------HH-----------HHHHHHH
T ss_pred             cCccEEEECCCHHHHHHHHHHHHcCC---eEEEEEeCCccc---cccCH-----------HH-----------HHHHHHH
Confidence            35799999999999999999999986   899999875421   00000           00           0123566


Q ss_pred             HHHCCCeEEeCCcEEEEeCCC-c---EEEeCC---C----cEEEeccEEeccCCCCCc
Q 011351          130 YKEKGIEMIYQDPVTSIDIEK-Q---TLITNS---G----KLLKYGSLIVATGCTASR  176 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~-~---~v~~~~---g----~~i~yd~lVlAtG~~~~~  176 (488)
                      +++.+++++.++.|.+++... .   .+.+.+   +    +++.+|.+++|+|..|..
T Consensus       238 l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~  295 (478)
T 3dk9_A          238 LENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNT  295 (478)
T ss_dssp             HHHTTCEEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEESC
T ss_pred             HHHCCCEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccCC
Confidence            788999999998999987542 2   455554   2    578999999999987653

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=97.90  E-value=5.6e-05  Score=77.80  Aligned_cols=99  Identities=17%  Similarity=0.203  Sum_probs=75.9

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc--------------------------------------------
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--------------------------------------------  243 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l--------------------------------------------  243 (488)
                      ..|+|||+|+.|+-+|..|++.|.+|+++++.+.+.                                            
T Consensus         6 ~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~~   85 (535)
T 3ihg_A            6 VDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIGGVADEVVRADDIRGTQGDFVIRLAE   85 (535)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCCCCCCSCCBCHHHHHHHHHTTCHHHHHHSCCSSCTTSCCEEEEES
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCccceECHHHHHHHHHcCCHHHHHhhCCCcccccceeeeEEe
Confidence            479999999999999999999999999999874220                                            


Q ss_pred             -------c----c-----------------cc-CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCC---cEEEEEeCCC
Q 011351          244 -------Q----R-----------------LF-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG---RVAAVKLEDG  291 (488)
Q Consensus       244 -------~----~-----------------~~-~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~---~v~~v~l~~g  291 (488)
                             .    .                 .+ ...+...+.+.+++.|+++++++++++++.++++   .+ .+.+.++
T Consensus        86 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~v-~v~~~~~  164 (535)
T 3ihg_A           86 SVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQDKLEPILLAQARKHGGAIRFGTRLLSFRQHDDDAGAGV-TARLAGP  164 (535)
T ss_dssp             SSSSCEEEEEESCHHHHHHTTGGGCSCCCBCCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEECGGGCSEE-EEEEEET
T ss_pred             ccCCceeeeccccccccccccccCCCCcccccCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCccccE-EEEEEcC
Confidence                   0    0                 00 0234566777788889999999999999876442   33 4566665


Q ss_pred             ---cEEEcCEEEEeecCcc
Q 011351          292 ---STIDADTIVIGIGAKP  307 (488)
Q Consensus       292 ---~~i~~D~vi~a~G~~p  307 (488)
                         .++.||+||.|.|...
T Consensus       165 ~~~~~i~a~~vV~AdG~~S  183 (535)
T 3ihg_A          165 DGEYDLRAGYLVGADGNRS  183 (535)
T ss_dssp             TEEEEEEEEEEEECCCTTC
T ss_pred             CCeEEEEeCEEEECCCCcc
Confidence               6799999999999864

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=97.88  E-value=0.0001  Score=70.01  Aligned_cols=101  Identities=21%  Similarity=0.232  Sum_probs=73.4

Q ss_pred             CeEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCcCcccc-------------------------------------cC
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQRL-------------------------------------FT  248 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~--g~~v~lv~~~~~~l~~~-------------------------------------~~  248 (488)
                      ..|+|||+|+.|+.+|..|++.  |.+|+++++.+.+-...                                     ..
T Consensus        66 ~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~g~~~~~~~~  145 (326)
T 2gjc_A           66 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVVKHA  145 (326)
T ss_dssp             ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCGGGCCCEEEETTTHHHHHHTTCCCEECSSEEEESCH
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccccccCcccchhhhhhHHHHHHHhhCcccccCCCeEEEcch
Confidence            3799999999999999999998  99999999865432100                                     01


Q ss_pred             HHHHHHHHHHHHH-cCcEEEcCCeEEEEEeCC--C-C--cEEEEEeC--------------CCcEEEc------------
Q 011351          249 PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGS--D-G--RVAAVKLE--------------DGSTIDA------------  296 (488)
Q Consensus       249 ~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~--~-~--~v~~v~l~--------------~g~~i~~------------  296 (488)
                      ..+...+.+.+.+ .||+++.++.++++..++  + +  ++.+|.+.              ++.++.+            
T Consensus       146 ~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~~~v~~~g~~~~~~d~~~I~A~G~~~~~~~~~~  225 (326)
T 2gjc_A          146 ALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDLS  225 (326)
T ss_dssp             HHHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEEEEHHHHTC---CCCCCCEEEEESCCCSSSCCCSS
T ss_pred             HHHHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEecceeecccccceeccCceEEEEeecccccccccc
Confidence            2334455565666 499999999999998653  3 4  77777652              3457999            


Q ss_pred             ---CEEEEeecCccC
Q 011351          297 ---DTIVIGIGAKPT  308 (488)
Q Consensus       297 ---D~vi~a~G~~p~  308 (488)
                         |.||.|||....
T Consensus       226 ~~~~~VV~ATG~~~~  240 (326)
T 2gjc_A          226 QKHGVILSTTGHDGP  240 (326)
T ss_dssp             TTCCEEEECCCCC--
T ss_pred             ccCCEEEECcCCCch
Confidence               999999998754

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=97.88  E-value=5.1e-05  Score=78.45  Aligned_cols=98  Identities=18%  Similarity=0.266  Sum_probs=75.6

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc-------------------------------------ccc----
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------------------------------------QRL----  246 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l-------------------------------------~~~----  246 (488)
                      ..|+|||+|+.|+-+|..|++.|.+|+++++.+.+.                                     ...    
T Consensus        50 ~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~  129 (570)
T 3fmw_A           50 TDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAGIFTQG  129 (570)
T ss_dssp             -CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTTBCTTC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCCccccc
Confidence            469999999999999999999999999999753211                                     000    


Q ss_pred             ---------------c-CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe--CCC-cEEEcCEEEEeecCcc
Q 011351          247 ---------------F-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL--EDG-STIDADTIVIGIGAKP  307 (488)
Q Consensus       247 ---------------~-~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l--~~g-~~i~~D~vi~a~G~~p  307 (488)
                                     + ...+...+.+.+++.|++++++++|++++.++++ + .+.+  .+| +++.+|+||.|.|...
T Consensus       130 ~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~-v-~v~~~~~~G~~~~~a~~vV~ADG~~S  207 (570)
T 3fmw_A          130 LDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEA-V-EVTVAGPSGPYPVRARYGVGCDGGRS  207 (570)
T ss_dssp             CBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSC-E-EEEEEETTEEEEEEESEEEECSCSSC
T ss_pred             ccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCe-E-EEEEEeCCCcEEEEeCEEEEcCCCCc
Confidence                           0 1235566777778889999999999999865444 3 3555  778 6899999999999875

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=97.86  E-value=7.4e-06  Score=83.84  Aligned_cols=52  Identities=17%  Similarity=0.311  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecC
Q 011351          250 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  305 (488)
Q Consensus       250 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~  305 (488)
                      .+.+.+.+.+++.|+++++++.|++|..+ ++   .+++.+|+++.||.||+++..
T Consensus       223 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~-~~---~v~~~~G~~~~ad~vI~t~P~  274 (513)
T 4gde_A          223 GIWIAVANTLPKEKTRFGEKGKVTKVNAN-NK---TVTLQDGTTIGYKKLVSTMAV  274 (513)
T ss_dssp             HHHHHHHHTSCGGGEEESGGGCEEEEETT-TT---EEEETTSCEEEEEEEEECSCH
T ss_pred             HHHHHHHHHHHhcCeeeecceEEEEEEcc-CC---EEEEcCCCEEECCEEEECCCH
Confidence            45666777778889999999999999853 33   467899999999999998664

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=97.86  E-value=0.00019  Score=73.88  Aligned_cols=56  Identities=16%  Similarity=0.290  Sum_probs=45.5

Q ss_pred             HHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCC
Q 011351          253 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  309 (488)
Q Consensus       253 ~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~  309 (488)
                      ..+.+.+++.|++++.+ +|+++..++++.+..|.+.+|+++.+|.||.|+|.....
T Consensus       169 ~~L~~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s~~  224 (538)
T 2aqj_A          169 DFLKRWAVERGVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRGLL  224 (538)
T ss_dssp             HHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGCCC
T ss_pred             HHHHHHHHHCCCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCchhh
Confidence            44555666789999999 899998765666667888999889999999999997653

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=97.86  E-value=1.8e-05  Score=80.41  Aligned_cols=97  Identities=12%  Similarity=0.157  Sum_probs=69.5

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      ..++++|||||+.|+.+|..|++.|.   +|+++++....    +.+..           .+           .....+.
T Consensus       184 ~~~~vvViGgG~ig~E~A~~l~~~g~---~Vtlv~~~~~l----~~~d~-----------~~-----------~~~l~~~  234 (488)
T 3dgz_A          184 SPGKTLVVGASYVALECAGFLTGIGL---DTTVMMRSIPL----RGFDQ-----------QM-----------SSLVTEH  234 (488)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCSS----TTSCH-----------HH-----------HHHHHHH
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCC---ceEEEEcCccc----ccCCH-----------HH-----------HHHHHHH
Confidence            45689999999999999999999986   89999875321    00000           00           1223566


Q ss_pred             HHHCCCeEEeCCcEEEEeCC-C--cEEEeCC---Cc--EEEeccEEeccCCCCC
Q 011351          130 YKEKGIEMIYQDPVTSIDIE-K--QTLITNS---GK--LLKYGSLIVATGCTAS  175 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~-~--~~v~~~~---g~--~i~yd~lVlAtG~~~~  175 (488)
                      +++.+++++.++.+.++... +  ..+++.+   |+  ++.+|.+++|+|..|.
T Consensus       235 l~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~~p~  288 (488)
T 3dgz_A          235 MESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPE  288 (488)
T ss_dssp             HHHTTCEEEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCEEES
T ss_pred             HHHCCCEEEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccCCcc
Confidence            78899999999888888652 2  2455543   54  4789999999998765

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=97.85  E-value=6.5e-05  Score=80.19  Aligned_cols=38  Identities=24%  Similarity=0.453  Sum_probs=33.7

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   89 (488)
                      +..++|+|||||++|+++|..|++.|+   +|+|+|+.+..
T Consensus       334 ~~~~~v~viG~G~~Gl~aA~~l~~~g~---~v~v~E~~~~~  371 (776)
T 4gut_A          334 YHNKSVIIIGAGPAGLAAARQLHNFGI---KVTVLEAKDRI  371 (776)
T ss_dssp             GTSCEEEEECCSHHHHHHHHHHHHHTC---EEEEECSSSSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCC---cEEEEecccce
Confidence            446899999999999999999999987   89999997643

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=97.82  E-value=1e-05  Score=85.31  Aligned_cols=35  Identities=31%  Similarity=0.459  Sum_probs=32.2

Q ss_pred             CCeEEEEcCchHHHHHHHHHHH-----cCCCCCcEEEEcCCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVE-----HGMADGRLCIVSKEAY   88 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~-----~g~~~~~V~lie~~~~   88 (488)
                      +++|+|||||++|+++|..|++     .|+   +|+|||+.+.
T Consensus         8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi---~v~viE~~~~   47 (665)
T 1pn0_A            8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDL---KVRIIDKRST   47 (665)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTC---CEEEECSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHhccccccCCC---CEEEEeCCCC
Confidence            5799999999999999999999     888   8999999764

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=97.81  E-value=0.00015  Score=73.96  Aligned_cols=58  Identities=17%  Similarity=0.260  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCC-c--EEEcC-EEEEeecCcc
Q 011351          250 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-S--TIDAD-TIVIGIGAKP  307 (488)
Q Consensus       250 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g-~--~i~~D-~vi~a~G~~p  307 (488)
                      .+...+.+.+++.|+++++++.++++..++++++.+|...++ +  ++.+| .||+|+|-..
T Consensus       203 ~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~~  264 (510)
T 4at0_A          203 MLMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQYGKEVAVRARRGVVLATGSFA  264 (510)
T ss_dssp             HHHHHHHHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEETTEEEEEEEEEEEEECCCCCT
T ss_pred             HHHHHHHHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEECCcEEEEEeCCeEEEeCCChh
Confidence            455566677788899999999999998765678887776543 2  58996 9999999654

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=97.81  E-value=1.8e-05  Score=80.59  Aligned_cols=101  Identities=17%  Similarity=0.316  Sum_probs=68.7

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc---------ccCH-HHHHHHHHHH--HHcCcEEEcCCeEEE
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR---------LFTP-SLAQRYEQLY--QQNGVKFVKGASIKN  274 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~---------~~~~-~~~~~~~~~l--~~~GV~v~~~~~v~~  274 (488)
                      .++|||||+|+.|+.+|..|.+.+.+|++|++.+.+.-.         .+++ ++...+.+.+  ++.+++++.+ ++++
T Consensus        42 KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~~~~~PlL~~va~G~l~~~~i~~p~~~~~~~~~~~v~~~~~-~v~~  120 (502)
T 4g6h_A           42 KPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPIVNFALKKKGNVTYYEA-EATS  120 (502)
T ss_dssp             SCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSEEECGGGGGGTTTTSSCGGGGEEEHHHHHTTCSSCEEEEEE-EEEE
T ss_pred             CCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCCcccccchhHHhhccccHHHhhhhHHHHHHhhcCCeEEEEE-EEEE
Confidence            358999999999999999999889999999998753211         1111 1111122322  3457888875 6888


Q ss_pred             EEeCCCCcEEEEE------------------eCCCcEEEcCEEEEeecCccCCh
Q 011351          275 LEAGSDGRVAAVK------------------LEDGSTIDADTIVIGIGAKPTVS  310 (488)
Q Consensus       275 i~~~~~~~v~~v~------------------l~~g~~i~~D~vi~a~G~~p~~~  310 (488)
                      |+.+ ...+ .+.                  ..++.++++|.+|+|+|.+|+..
T Consensus       121 ID~~-~k~V-~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~~  172 (502)
T 4g6h_A          121 INPD-RNTV-TIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTF  172 (502)
T ss_dssp             EEGG-GTEE-EEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEECCT
T ss_pred             EEhh-hCEE-EEeecccceeecccccccccccCCceEEeCCEEEEcCCcccccC
Confidence            8753 2222 221                  13567899999999999998753

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=97.79  E-value=3.7e-05  Score=77.68  Aligned_cols=98  Identities=23%  Similarity=0.291  Sum_probs=71.2

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccc------------------------------cCH-H------
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL------------------------------FTP-S------  250 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~------------------------------~~~-~------  250 (488)
                      ..++|||+|+.|+.+|..|++.|.+|+++++.+.+-...                              ++. .      
T Consensus         5 ~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (466)
T 3l8k_A            5 YDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANVKIPLDFSTVQDRKD   84 (466)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCSCCCCCHHHHHHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccCCCCcCHHHHHHHHH
Confidence            369999999999999999999999999999766542110                              000 0      


Q ss_pred             ----HH--HHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcE--EEcCEEEEeecCccCCh
Q 011351          251 ----LA--QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST--IDADTIVIGIGAKPTVS  310 (488)
Q Consensus       251 ----~~--~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~--i~~D~vi~a~G~~p~~~  310 (488)
                          +.  ..+...+++.||+++.+ ++..++.   .. ..|.+.+|++  +.+|.+|+|||.+|...
T Consensus        85 ~~~~l~~~~~~~~~~~~~~v~~~~g-~v~~id~---~~-~~V~~~~g~~~~~~~d~lviAtG~~p~~p  147 (466)
T 3l8k_A           85 YVQELRFKQHKRNMSQYETLTFYKG-YVKIKDP---TH-VIVKTDEGKEIEAETRYMIIASGAETAKL  147 (466)
T ss_dssp             HHHHHHHHHHHHHHTTCTTEEEESE-EEEEEET---TE-EEEEETTSCEEEEEEEEEEECCCEEECCC
T ss_pred             hheeccccchHHHHHHhCCCEEEEe-EEEEecC---Ce-EEEEcCCCcEEEEecCEEEECCCCCccCC
Confidence                01  33444556679999888 5666652   22 3577788888  99999999999988643

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=97.78  E-value=0.00016  Score=68.97  Aligned_cols=139  Identities=21%  Similarity=0.226  Sum_probs=90.5

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCcCccc------------------------------------c-c
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQR------------------------------------L-F  247 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~--g~~v~lv~~~~~~l~~------------------------------------~-~  247 (488)
                      ...|+|||+|+.|+.+|..|++.  |.+|+++++.+.+-..                                    . .
T Consensus        79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~G~~~~~~~  158 (344)
T 3jsk_A           79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAMVMRKPADVFLDEVGVPYEDEGDYVVVKH  158 (344)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCCBTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESC
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccccCCccchhhhcchHHHHHHHHcCCcccccCCeEEEec
Confidence            35799999999999999999997  9999999987533100                                    0 0


Q ss_pred             CHHHHHHHHHHHHH-cCcEEEcCCeEEEEEeCCC----------------C--cEEEEEeC--------------CCcEE
Q 011351          248 TPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSD----------------G--RVAAVKLE--------------DGSTI  294 (488)
Q Consensus       248 ~~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~----------------~--~v~~v~l~--------------~g~~i  294 (488)
                      ..++.+.+.+.+.+ .|++++.++.++++..+++                +  ++.+|...              +..++
T Consensus       159 ~~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~~~~~~d~~~i  238 (344)
T 3jsk_A          159 AALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQSAMDPNTI  238 (344)
T ss_dssp             HHHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSSSSSCCBCEEE
T ss_pred             HHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCCcccccCceEE
Confidence            12334555566666 5999999999999875432                2  66666552              23479


Q ss_pred             EcCEEEEeecCccCC-h----hhhhcCCccc-CCCEEeCCC-------CCC--CCCCEEEEceecc
Q 011351          295 DADTIVIGIGAKPTV-S----PFERVGLNSS-VGGIQVDGQ-------FRT--RMPGIFAIGDVAA  345 (488)
Q Consensus       295 ~~D~vi~a~G~~p~~-~----~~~~~gl~~~-~g~i~vd~~-------~~t--~~~~Ifa~GD~a~  345 (488)
                      .++.||.|+|..... .    .+...++... .|.-..|-.       -.|  -+|++|++|=.+.
T Consensus       239 ~Ak~VV~ATG~~s~v~~~~~~~l~~~~~~~~~~g~~~~~~~~~e~~~v~~t~~v~~gl~~~gm~~~  304 (344)
T 3jsk_A          239 NAPVIISTTGHDGPFGAFSVKRLVSMKQMERLNGMRGLDMQSAEDAIVNNTREIVPGLIVGGMELS  304 (344)
T ss_dssp             ECSEEEECCCSSSSSSCHHHHHHHHTTSSSCCCCCEEECHHHHHHHHHHTCEEEETTEEECGGGHH
T ss_pred             EcCEEEECCCCCchhhHHHHHHHhhcCcccccCCCcccccccchhhhcccCceEcCCEEEechhhH
Confidence            999999999987652 1    1334454311 111111100       012  3799999997764

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=97.76  E-value=0.00021  Score=72.75  Aligned_cols=100  Identities=18%  Similarity=0.270  Sum_probs=76.9

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc----------------------cc-----------------
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------RL-----------------  246 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~----------------------~~-----------------  246 (488)
                      ....|+|||+|+.|+-+|..|++.|.+|+++++.+.+..                      ..                 
T Consensus        11 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~   90 (499)
T 2qa2_A           11 SDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVETSTQGHFGGRPVD   90 (499)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCCEESEEEETTEEEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhccccccceecceecc
Confidence            345799999999999999999999999999997632110                      00                 


Q ss_pred             -------------c-CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCc---EEEcCEEEEeecCcc
Q 011351          247 -------------F-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS---TIDADTIVIGIGAKP  307 (488)
Q Consensus       247 -------------~-~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~---~i~~D~vi~a~G~~p  307 (488)
                                   + ...+.+.+.+.+++.|+++++++++++++.+++ .+ .+.+.+++   ++.+|+||.|.|...
T Consensus        91 ~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~-~v-~v~~~~~~g~~~~~a~~vVgADG~~S  166 (499)
T 2qa2_A           91 FGVLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGD-HV-VVEVEGPDGPRSLTTRYVVGCDGGRS  166 (499)
T ss_dssp             GGGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSS-CE-EEEEECSSCEEEEEEEEEEECCCTTC
T ss_pred             cccCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCC-EE-EEEEEcCCCcEEEEeCEEEEccCccc
Confidence                         0 023556677777888999999999999987644 34 46777764   799999999999875

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=97.76  E-value=1.1e-05  Score=81.50  Aligned_cols=41  Identities=27%  Similarity=0.519  Sum_probs=34.4

Q ss_pred             cEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCc
Q 011351          264 VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  306 (488)
Q Consensus       264 V~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~  306 (488)
                      +++++++.|++|+..+++ + .|.+.+|+++.+|.||+|++..
T Consensus       248 ~~i~~~~~V~~i~~~~~~-~-~v~~~~g~~~~ad~vi~a~p~~  288 (470)
T 3i6d_A          248 TKVYKGTKVTKLSHSGSC-Y-SLELDNGVTLDADSVIVTAPHK  288 (470)
T ss_dssp             EEEECSCCEEEEEECSSS-E-EEEESSSCEEEESEEEECSCHH
T ss_pred             CEEEeCCceEEEEEcCCe-E-EEEECCCCEEECCEEEECCCHH
Confidence            699999999999876443 3 6888999889999999998753

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=97.75  E-value=2.3e-05  Score=76.40  Aligned_cols=37  Identities=16%  Similarity=0.355  Sum_probs=33.3

Q ss_pred             CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      +.+++||+|||||++|+++|++|++.|.   +|+|||++.
T Consensus         3 m~~~~dVvVIG~Gi~Gls~A~~La~~G~---~V~vle~~~   39 (363)
T 1c0p_A            3 MHSQKRVVVLGSGVIGLSSALILARKGY---SVHILARDL   39 (363)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSC
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHhCCC---EEEEEeccC
Confidence            3456899999999999999999999987   899999875

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=97.75  E-value=0.00014  Score=72.13  Aligned_cols=98  Identities=17%  Similarity=0.224  Sum_probs=72.5

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCc-EEEEecCCcCccc----cc-----------------------------------
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPENHLLQR----LF-----------------------------------  247 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~-v~lv~~~~~~l~~----~~-----------------------------------  247 (488)
                      .+|+|||+|+.|+-+|..|++.|.+ |+++++.+.+.+.    .+                                   
T Consensus         5 ~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~g~   84 (410)
T 3c96_A            5 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSGA   84 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTTSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcccceeEEEEChHHHHHHHHCCChHHHHhhCCCcceEEEEcCCCC
Confidence            5799999999999999999999999 9999987542110    00                                   


Q ss_pred             ---------------------CHHHHHHHHHHHHH-cC-cEEEcCCeEEEEEeCCCCcEEEEEeCC---C--cEEEcCEE
Q 011351          248 ---------------------TPSLAQRYEQLYQQ-NG-VKFVKGASIKNLEAGSDGRVAAVKLED---G--STIDADTI  299 (488)
Q Consensus       248 ---------------------~~~~~~~~~~~l~~-~G-V~v~~~~~v~~i~~~~~~~v~~v~l~~---g--~~i~~D~v  299 (488)
                                           ...+.+.+.+.+++ .| +++++++++++++. +++ + .+.+.+   |  +++.+|+|
T Consensus        85 ~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~~~-v-~v~~~~~~~g~~~~~~ad~v  161 (410)
T 3c96_A           85 TVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEE-RDG-R-VLIGARDGHGKPQALGADVL  161 (410)
T ss_dssp             EEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEE-ETT-E-EEEEEEETTSCEEEEEESEE
T ss_pred             EEeeccCCccccCCCCeeeeeHHHHHHHHHHHHHhhCCCcEEEECCEEEEEec-CCc-c-EEEEecCCCCCceEEecCEE
Confidence                                 01344555566655 35 68999999999986 443 3 355554   7  57999999


Q ss_pred             EEeecCccC
Q 011351          300 VIGIGAKPT  308 (488)
Q Consensus       300 i~a~G~~p~  308 (488)
                      |.|.|....
T Consensus       162 V~AdG~~S~  170 (410)
T 3c96_A          162 VGADGIHSA  170 (410)
T ss_dssp             EECCCTTCH
T ss_pred             EECCCccch
Confidence            999998764

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=97.70  E-value=4.7e-05  Score=77.42  Aligned_cols=101  Identities=17%  Similarity=0.206  Sum_probs=71.0

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccc---------c---CHHHHHHHHHHHHHcCcEEEcCCeEEE
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL---------F---TPSLAQRYEQLYQQNGVKFVKGASIKN  274 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~---------~---~~~~~~~~~~~l~~~GV~v~~~~~v~~  274 (488)
                      ..+|+|||+|+.|+.+|..|++. .+|+++++.+.+-...         +   ..++...+.+.+ +.|++++.++.+.+
T Consensus       108 ~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~~~~~~~g~~~~~~~~~~~l~~~l-~~~v~~~~~~~v~~  185 (493)
T 1y56_A          108 VVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEELVGKL-NENTKIYLETSALG  185 (493)
T ss_dssp             EESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGGTCSEETTTTEEHHHHHHHHHHTC-CTTEEEETTEEECC
T ss_pred             cCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeeccccccCCCCCCHHHHHHHHHHHH-hcCCEEEcCCEEEE
Confidence            35799999999999999999999 9999999887542110         1   112223333333 56999999999988


Q ss_pred             EEeCCCCcEEEEEeCCCc--EEEcCEEEEeecCccCCh
Q 011351          275 LEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVS  310 (488)
Q Consensus       275 i~~~~~~~v~~v~l~~g~--~i~~D~vi~a~G~~p~~~  310 (488)
                      +... +..+......+++  ++.+|.+|+|+|..|...
T Consensus       186 i~~~-~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~~~  222 (493)
T 1y56_A          186 VFDK-GEYFLVPVVRGDKLIEILAKRVVLATGAIDSTM  222 (493)
T ss_dssp             CEEC-SSSEEEEEEETTEEEEEEESCEEECCCEEECCC
T ss_pred             EEcC-CcEEEEEEecCCeEEEEECCEEEECCCCCccCC
Confidence            8754 3333222334554  689999999999987643

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=97.70  E-value=6.5e-05  Score=74.35  Aligned_cols=63  Identities=24%  Similarity=0.254  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHcCcEEEcCCeEE---------EEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhh-hcCC
Q 011351          251 LAQRYEQLYQQNGVKFVKGASIK---------NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE-RVGL  317 (488)
Q Consensus       251 ~~~~~~~~l~~~GV~v~~~~~v~---------~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~-~~gl  317 (488)
                      +...+.+.+++.|++++.+++|+         ++..+ ++.+ .|.+.+| ++.+|.||+|+|.... .+++ .+++
T Consensus       174 l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~-~~~v-~v~~~~g-~i~a~~VV~A~G~~s~-~l~~~~~g~  246 (405)
T 3c4n_A          174 LALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVT-NTHQ-IVVHETR-QIRAGVIIVAAGAAGP-ALVEQGLGL  246 (405)
T ss_dssp             HHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC---------CBCCE-EEEEEEEEECCGGGHH-HHHHHHHCC
T ss_pred             HHHHHHHHHHHCCCEEEcCCEEEeccccccccceEee-CCeE-EEEECCc-EEECCEEEECCCccHH-HHHHHhcCC
Confidence            44556677778899999999999         87643 3444 5666666 7999999999998753 4455 4443

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=97.70  E-value=0.00022  Score=72.54  Aligned_cols=100  Identities=20%  Similarity=0.226  Sum_probs=76.3

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc----------------------cc-----------------
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------RL-----------------  246 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~----------------------~~-----------------  246 (488)
                      ....|+|||+|+.|+-+|..|++.|.+|+++++.+.+..                      ..                 
T Consensus        10 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~   89 (500)
T 2qa1_A           10 SDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEVETSTQGHFGGLPID   89 (500)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSCCBCCEEEETTEEEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhccccccccccceecc
Confidence            345799999999999999999999999999997632110                      00                 


Q ss_pred             ---c-----------CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCc---EEEcCEEEEeecCcc
Q 011351          247 ---F-----------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS---TIDADTIVIGIGAKP  307 (488)
Q Consensus       247 ---~-----------~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~---~i~~D~vi~a~G~~p  307 (488)
                         .           ...+.+.+.+.+++.|+++++++++++++.+++ .+ .+.+.+++   ++.+|+||.|.|...
T Consensus        90 ~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~-~v-~v~~~~~~g~~~~~a~~vVgADG~~S  165 (500)
T 2qa1_A           90 FGVLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGA-GV-TVEVRGPEGKHTLRAAYLVGCDGGRS  165 (500)
T ss_dssp             GGGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETT-EE-EEEEEETTEEEEEEESEEEECCCTTC
T ss_pred             cccCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCC-eE-EEEEEcCCCCEEEEeCEEEECCCcch
Confidence               0           023455667777888999999999999987544 34 46666664   799999999999875

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=97.68  E-value=5.5e-05  Score=77.48  Aligned_cols=97  Identities=15%  Similarity=0.241  Sum_probs=66.1

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      ..++++|||||+.|+.+|..|++.|.   +|+++++....    +.+..           .+           .....+.
T Consensus       209 ~~~~vvVIGgG~ig~E~A~~l~~~G~---~Vtlv~~~~~l----~~~d~-----------~~-----------~~~~~~~  259 (519)
T 3qfa_A          209 CPGKTLVVGASYVALECAGFLAGIGL---DVTVMVRSILL----RGFDQ-----------DM-----------ANKIGEH  259 (519)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCSS----TTSCH-----------HH-----------HHHHHHH
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHcCC---eEEEEeccccc----ccCCH-----------HH-----------HHHHHHH
Confidence            35679999999999999999999986   89999864211    00000           00           1123456


Q ss_pred             HHHCCCeEEeCCcEEEEeCCC----c--EEE--eCCC-c--EEEeccEEeccCCCCC
Q 011351          130 YKEKGIEMIYQDPVTSIDIEK----Q--TLI--TNSG-K--LLKYGSLIVATGCTAS  175 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~----~--~v~--~~~g-~--~i~yd~lVlAtG~~~~  175 (488)
                      +++.||+++.++.+..+....    .  .++  ..++ +  ++.+|.+++|+|..|.
T Consensus       260 l~~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p~  316 (519)
T 3qfa_A          260 MEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDAC  316 (519)
T ss_dssp             HHHTTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEES
T ss_pred             HHHCCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCccc
Confidence            788999999987766665321    2  232  2344 2  5789999999998765

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=97.68  E-value=4.1e-05  Score=74.48  Aligned_cols=39  Identities=21%  Similarity=0.297  Sum_probs=34.7

Q ss_pred             CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC-CCC
Q 011351           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE-AYA   89 (488)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~-~~~   89 (488)
                      +...++|+|||||++||+||..|++.|+   +|+|+|++ +..
T Consensus        41 ~~~~~~V~IIGAGiaGL~aA~~L~~~G~---~V~VlE~~~~~v   80 (376)
T 2e1m_A           41 PGPPKRILIVGAGIAGLVAGDLLTRAGH---DVTILEANANRV   80 (376)
T ss_dssp             CCSCCEEEEECCBHHHHHHHHHHHHTSC---EEEEECSCSSCC
T ss_pred             CCCCceEEEECCCHHHHHHHHHHHHCCC---cEEEEecccccc
Confidence            4556899999999999999999999987   89999998 654

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=97.68  E-value=2.6e-05  Score=77.93  Aligned_cols=35  Identities=17%  Similarity=0.257  Sum_probs=31.5

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      ++++|+|||||++|+++|..|++.|+   +|+|||+.+
T Consensus        21 m~~~ViIVGaGpaGl~~A~~La~~G~---~V~viE~~~   55 (430)
T 3ihm_A           21 MKKRIGIVGAGTAGLHLGLFLRQHDV---DVTVYTDRK   55 (430)
T ss_dssp             --CEEEEECCHHHHHHHHHHHHHTTC---EEEEEESCC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCCC---eEEEEcCCC
Confidence            45799999999999999999999988   899999976

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=97.65  E-value=0.00042  Score=68.19  Aligned_cols=59  Identities=24%  Similarity=0.374  Sum_probs=42.7

Q ss_pred             HHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcC
Q 011351          254 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG  316 (488)
Q Consensus       254 ~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~g  316 (488)
                      .+.+.+++.|++++++++|++++.++ +.+ .|.+.+| ++.+|.||+|+|.... .+++.++
T Consensus       158 ~l~~~a~~~Gv~i~~~~~V~~i~~~~-~~v-~v~t~~g-~i~a~~VV~A~G~~s~-~l~~~~g  216 (397)
T 2oln_A          158 ALFTLAQAAGATLRAGETVTELVPDA-DGV-SVTTDRG-TYRAGKVVLACGPYTN-DLLEPLG  216 (397)
T ss_dssp             HHHHHHHHTTCEEEESCCEEEEEEET-TEE-EEEESSC-EEEEEEEEECCGGGHH-HHHGGGT
T ss_pred             HHHHHHHHcCCEEECCCEEEEEEEcC-CeE-EEEECCC-EEEcCEEEEcCCcChH-HHhhhcC
Confidence            34455677899999999999998653 334 4666665 6999999999998643 3444444

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=97.64  E-value=0.00032  Score=76.13  Aligned_cols=55  Identities=27%  Similarity=0.378  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCcc
Q 011351          251 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  307 (488)
Q Consensus       251 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p  307 (488)
                      +...+.+.+++.|++++.++.|++++.. ++.+..|.+.+| ++.||.||+|+|...
T Consensus       153 l~~~L~~~a~~~Gv~i~~~t~V~~i~~~-~~~v~~V~t~~G-~i~Ad~VV~AaG~~s  207 (830)
T 1pj5_A          153 AVQLLIKRTESAGVTYRGSTTVTGIEQS-GGRVTGVQTADG-VIPADIVVSCAGFWG  207 (830)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETTE-EEECSEEEECCGGGH
T ss_pred             HHHHHHHHHHHcCCEEECCceEEEEEEe-CCEEEEEEECCc-EEECCEEEECCccch
Confidence            3345566678889999999999999864 455666788777 799999999999865

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=97.63  E-value=4.9e-05  Score=75.65  Aligned_cols=54  Identities=17%  Similarity=0.271  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCc
Q 011351          250 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  306 (488)
Q Consensus       250 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~  306 (488)
                      .+....++..+..+.++++++.|++|+.. ++.+ .|.+.+|+ +.+|.||++++..
T Consensus       204 g~~~l~~~l~~~l~~~v~~~~~V~~i~~~-~~~v-~v~~~~g~-~~ad~Vv~a~~~~  257 (424)
T 2b9w_A          204 GTQAMFEHLNATLEHPAERNVDITRITRE-DGKV-HIHTTDWD-RESDVLVLTVPLE  257 (424)
T ss_dssp             CHHHHHHHHHHHSSSCCBCSCCEEEEECC-TTCE-EEEESSCE-EEESEEEECSCHH
T ss_pred             hHHHHHHHHHHhhcceEEcCCEEEEEEEE-CCEE-EEEECCCe-EEcCEEEECCCHH
Confidence            34455555556667788999999999865 4445 47888875 8999999998864

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=97.63  E-value=0.00046  Score=70.44  Aligned_cols=55  Identities=16%  Similarity=0.262  Sum_probs=45.5

Q ss_pred             HHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351          253 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  308 (488)
Q Consensus       253 ~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~  308 (488)
                      ..+.+.+++.|++++.+ +|++++.++++.+..|.+.+|+++.+|.||.|+|....
T Consensus       177 ~~L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~  231 (511)
T 2weu_A          177 RYLSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRGL  231 (511)
T ss_dssp             HHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGCC
T ss_pred             HHHHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcchH
Confidence            44555667789999999 99999876566677888999988999999999999764

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=97.63  E-value=3.9e-05  Score=77.65  Aligned_cols=55  Identities=29%  Similarity=0.465  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCc
Q 011351          250 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  306 (488)
Q Consensus       250 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~  306 (488)
                      .+.+.+.+.+++.|++|++++.|++|+..+++.+ .|.+ ++.++.+|.||+|++..
T Consensus       235 ~l~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~-~v~~-~~~~~~ad~vv~a~p~~  289 (477)
T 3nks_A          235 MLPQALETHLTSRGVSVLRGQPVCGLSLQAEGRW-KVSL-RDSSLEADHVISAIPAS  289 (477)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCCCEEEECGGGCE-EEEC-SSCEEEESEEEECSCHH
T ss_pred             HHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCceE-EEEE-CCeEEEcCEEEECCCHH
Confidence            5777888888999999999999999986543323 5655 55579999999998753

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=97.62  E-value=5.4e-05  Score=80.31  Aligned_cols=99  Identities=13%  Similarity=0.176  Sum_probs=72.5

Q ss_pred             CCCeEEEEc--CchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCH
Q 011351           50 ENREFVIVG--GGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP  127 (488)
Q Consensus        50 ~~~~vvIIG--gG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (488)
                      ..++|+|||  +|..|+.+|..|++.|.   +|++++..+...-        ....  .   ..           .....
T Consensus       522 ~g~~VvViG~ggG~~g~e~A~~L~~~g~---~Vtlv~~~~~l~~--------~~~~--~---~~-----------~~~l~  574 (690)
T 3k30_A          522 DGKKVVVYDDDHYYLGGVVAELLAQKGY---EVSIVTPGAQVSS--------WTNN--T---FE-----------VNRIQ  574 (690)
T ss_dssp             SSSEEEEEECSCSSHHHHHHHHHHHTTC---EEEEEESSSSTTG--------GGGG--G---TC-----------HHHHH
T ss_pred             CCCEEEEEcCCCCccHHHHHHHHHhCCC---eeEEEeccccccc--------cccc--c---hh-----------HHHHH
Confidence            456899999  99999999999999976   8999997754210        0000  0   00           01245


Q ss_pred             hHHHHCCCeEEeCCcEEEEeCCCcEEEe---CCCcEEEeccEEeccCCCCC
Q 011351          128 EWYKEKGIEMIYQDPVTSIDIEKQTLIT---NSGKLLKYGSLIVATGCTAS  175 (488)
Q Consensus       128 ~~~~~~~i~~~~~~~v~~id~~~~~v~~---~~g~~i~yd~lVlAtG~~~~  175 (488)
                      +.+++.|++++.+++|++++.+...+..   .+++++.+|.||+|+|..|.
T Consensus       575 ~~l~~~GV~i~~~~~V~~i~~~~~~v~~~~~~~~~~i~aD~VV~A~G~~p~  625 (690)
T 3k30_A          575 RRLIENGVARVTDHAVVAVGAGGVTVRDTYASIERELECDAVVMVTARLPR  625 (690)
T ss_dssp             HHHHHTTCEEEESEEEEEEETTEEEEEETTTCCEEEEECSEEEEESCEEEC
T ss_pred             HHHHHCCCEEEcCcEEEEEECCeEEEEEccCCeEEEEECCEEEECCCCCCC
Confidence            6678899999999999999876655553   24567999999999997654

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=97.61  E-value=0.00059  Score=67.74  Aligned_cols=51  Identities=24%  Similarity=0.416  Sum_probs=40.6

Q ss_pred             HHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351          256 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  308 (488)
Q Consensus       256 ~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~  308 (488)
                      .+.+++.|+++++++.|++|..+ ++++.+|.++ |+++.+|.||+|+|....
T Consensus       203 ~~~~~~~G~~i~~~~~V~~i~~~-~~~~~gv~~~-g~~~~ad~VV~a~~~~~~  253 (425)
T 3ka7_A          203 ETVISANGGKIHTGQEVSKILIE-NGKAAGIIAD-DRIHDADLVISNLGHAAT  253 (425)
T ss_dssp             HHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEET-TEEEECSEEEECSCHHHH
T ss_pred             HHHHHHcCCEEEECCceeEEEEE-CCEEEEEEEC-CEEEECCEEEECCCHHHH
Confidence            35566789999999999999865 5666667765 778999999999987543

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=97.61  E-value=3.1e-05  Score=79.36  Aligned_cols=38  Identities=21%  Similarity=0.318  Sum_probs=34.0

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcC-CCCCcEEEEcCCCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHG-MADGRLCIVSKEAYAP   90 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g-~~~~~V~lie~~~~~~   90 (488)
                      ++++|+|||||+|||+||..|++.| .   +|+|+|+++...
T Consensus         7 ~~~~VvIIGaG~aGL~AA~~L~~~G~~---~V~VlEa~~riG   45 (516)
T 1rsg_A            7 AKKKVIIIGAGIAGLKAASTLHQNGIQ---DCLVLEARDRVG   45 (516)
T ss_dssp             EEEEEEEECCBHHHHHHHHHHHHTTCC---SEEEECSSSSSB
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhcCCC---CEEEEeCCCCCC
Confidence            4579999999999999999999998 6   899999997653

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=97.60  E-value=0.00037  Score=71.45  Aligned_cols=55  Identities=16%  Similarity=0.266  Sum_probs=44.1

Q ss_pred             HHHHHHHHH-cCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351          253 QRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  308 (488)
Q Consensus       253 ~~~~~~l~~-~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~  308 (488)
                      +.+.+.+++ .|++++.+ +|++++.++++.+..|.+.+|+++.+|.||.|+|....
T Consensus       179 ~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S~  234 (526)
T 2pyx_A          179 QLLTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKSL  234 (526)
T ss_dssp             HHHHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGCC
T ss_pred             HHHHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcchH
Confidence            344555666 79999999 69999876566666788888878999999999999764

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=97.60  E-value=5.3e-05  Score=76.17  Aligned_cols=59  Identities=19%  Similarity=0.228  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCC-CCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351          249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGS-DGRVAAVKLEDGSTIDADTIVIGIGAKPT  308 (488)
Q Consensus       249 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~-~~~v~~v~l~~g~~i~~D~vi~a~G~~p~  308 (488)
                      ..+.+.+.+.+++.|.++++++.|++|.... ++++..|.+ +|+++.||.||+++|..+.
T Consensus       242 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~-~g~~~~ad~VV~a~~~~~~  301 (453)
T 2bcg_G          242 GELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT-KLGTFKAPLVIADPTYFPE  301 (453)
T ss_dssp             THHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE-TTEEEECSCEEECGGGCGG
T ss_pred             HHHHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEE-CCeEEECCEEEECCCccch
Confidence            4677888888999999999999999998642 566666776 5788999999999998764

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=97.60  E-value=5.4e-05  Score=74.74  Aligned_cols=38  Identities=13%  Similarity=0.190  Sum_probs=34.1

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHc-CCCCCcEEEEcCCCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKEAYAP   90 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~-g~~~~~V~lie~~~~~~   90 (488)
                      +++||+|||||++|++||..|++. |.   +|+|+|+++...
T Consensus         6 ~~~~v~IiGaG~~Gl~aA~~L~~~~g~---~v~v~E~~~~~G   44 (399)
T 1v0j_A            6 ARFDLFVVGSGFFGLTIAERVATQLDK---RVLVLERRPHIG   44 (399)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHHSCC---CEEEECSSSSSS
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHhCCC---CEEEEeCCCCCC
Confidence            368999999999999999999998 77   899999997653

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.59  E-value=3.7e-05  Score=85.10  Aligned_cols=93  Identities=20%  Similarity=0.264  Sum_probs=71.2

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCcCcc--------cccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEe
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENHLLQ--------RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  277 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~-~v~lv~~~~~~l~--------~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~  277 (488)
                      +++|+|||+|+.|+.+|..|++.|. +|+++++.+.+..        ..++.+..++..+.+++.||++++++.+..   
T Consensus       187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~~~~ip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~---  263 (1025)
T 1gte_A          187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSE---  263 (1025)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBST---
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCccccccCCcccCCHHHHHHHHHHHHHCCcEEEcccEecc---
Confidence            5789999999999999999999998 7999998765421        013445666667788999999999976521   


Q ss_pred             CCCCcEEEEEeCCCcEEEcCEEEEeecC-ccC
Q 011351          278 GSDGRVAAVKLEDGSTIDADTIVIGIGA-KPT  308 (488)
Q Consensus       278 ~~~~~v~~v~l~~g~~i~~D~vi~a~G~-~p~  308 (488)
                         .   .+.+++++++.+|.||+|||. +|.
T Consensus       264 ---~---~v~~~~~~~~~~d~vvlAtGa~~p~  289 (1025)
T 1gte_A          264 ---N---EITLNTLKEEGYKAAFIGIGLPEPK  289 (1025)
T ss_dssp             ---T---SBCHHHHHHTTCCEEEECCCCCEEC
T ss_pred             ---c---eEEhhhcCccCCCEEEEecCCCCCC
Confidence               1   134455556889999999998 475

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.59  E-value=3.1e-05  Score=77.97  Aligned_cols=91  Identities=14%  Similarity=0.185  Sum_probs=69.0

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCcCc--------ccc-cCHHHHHHHHHHHHHcCcEEEcCCeEEE
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLL--------QRL-FTPSLAQRYEQLYQQNGVKFVKGASIKN  274 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g--~~v~lv~~~~~~l--------~~~-~~~~~~~~~~~~l~~~GV~v~~~~~v~~  274 (488)
                      ..++++|||+|+.|+.+|..|.+.+  .+|+++++.+.+.        +.. ...++...+.+.+++.||+++.++.+. 
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~-   83 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVG-   83 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBT-
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceeecccCCCCccHHHHHHHHHHHHHhCCcEEEeeeEEe-
Confidence            3578999999999999999999988  8999999987654        111 123456677788888999999987652 


Q ss_pred             EEeCCCCcEEEEEeCCCcEEEcCEEEEeecCcc
Q 011351          275 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  307 (488)
Q Consensus       275 i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p  307 (488)
                            .   .|.+++. ++.+|.||+|||..|
T Consensus        84 ------~---~V~~~~~-~~~~d~lVlAtGs~~  106 (460)
T 1cjc_A           84 ------R---DVTVQEL-QDAYHAVVLSYGAED  106 (460)
T ss_dssp             ------T---TBCHHHH-HHHSSEEEECCCCCE
T ss_pred             ------e---EEEeccc-eEEcCEEEEecCcCC
Confidence                  1   1333333 478999999999985

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=97.59  E-value=3.3e-05  Score=77.65  Aligned_cols=37  Identities=22%  Similarity=0.381  Sum_probs=33.5

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   89 (488)
                      +++||+|||||++||+||..|++.|+   +|+|+|+++..
T Consensus         4 ~~~~v~iiG~G~~Gl~aA~~l~~~g~---~v~v~E~~~~~   40 (453)
T 2yg5_A            4 LQRDVAIVGAGPSGLAAATALRKAGL---SVAVIEARDRV   40 (453)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCC---cEEEEECCCCC
Confidence            45799999999999999999999987   79999998765

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=97.58  E-value=5e-05  Score=75.61  Aligned_cols=35  Identities=14%  Similarity=0.252  Sum_probs=32.0

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   89 (488)
                      +||+|||||++|++||++|++.|.   +|+|+|+++..
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~---~V~vlE~~~~~   35 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKAGH---EVEVFERLPIT   35 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTTC---EEEEECSSSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCC---ceEEEeCCCCC
Confidence            489999999999999999999987   89999998753

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.58  E-value=0.00011  Score=76.62  Aligned_cols=97  Identities=11%  Similarity=0.205  Sum_probs=66.3

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      ..++|+|||||+.|+.+|..|++.|.   +|+++++....    +.+..           .+           .....+.
T Consensus       285 ~~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~l----~~~d~-----------~~-----------~~~~~~~  335 (598)
T 2x8g_A          285 FPGKTLVIGASYVALECAGFLASLGG---DVTVMVRSILL----RGFDQ-----------QM-----------AEKVGDY  335 (598)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCSS----TTSCH-----------HH-----------HHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC---EEEEEECCcCc----CcCCH-----------HH-----------HHHHHHH
Confidence            34689999999999999999999986   79999876211    00000           00           0123456


Q ss_pred             HHHCCCeEEeCCcEEEEeC-------C--CcE--EE--eCCCcEEE--eccEEeccCCCCC
Q 011351          130 YKEKGIEMIYQDPVTSIDI-------E--KQT--LI--TNSGKLLK--YGSLIVATGCTAS  175 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~-------~--~~~--v~--~~~g~~i~--yd~lVlAtG~~~~  175 (488)
                      +++.||+++.++.+..+..       .  ...  +.  ..+|+++.  +|.+++|+|..|.
T Consensus       336 l~~~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~G~~p~  396 (598)
T 2x8g_A          336 MENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQ  396 (598)
T ss_dssp             HHHTTCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECSCEEEC
T ss_pred             HHhCCCEEEECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEeCCccc
Confidence            6788999999877766632       1  122  22  35776555  9999999998765

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.58  E-value=0.00029  Score=77.39  Aligned_cols=101  Identities=16%  Similarity=0.154  Sum_probs=71.6

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccc-------c----CHHHHHHHHHHHHHc-CcEEEcCCeEEE
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-------F----TPSLAQRYEQLYQQN-GVKFVKGASIKN  274 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~-------~----~~~~~~~~~~~l~~~-GV~v~~~~~v~~  274 (488)
                      ..+++|||+|+.|+.+|..+++.|.+|+++++.+.+-...       +    ..+....+.+.+.+. +|+++.++.+..
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~~~~k~~i~~~~~~~~~~~~~~~l~~~~~v~~~~~~~V~~  207 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLLDTAGEQIDGMDSSAWIEQVTSELAEAEETTHLQRTTVFG  207 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGGGSSCCEETTEEHHHHHHHHHHHHHHSTTEEEESSEEEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceeccCCccccCCCCHHHHHHHHHHHHhhcCCcEEEeCCEEEe
Confidence            3579999999999999999999999999999876542111       1    123334445556664 999999999988


Q ss_pred             EEeCCCCcEEEEEe---------------CCCcEEEcCEEEEeecCccCC
Q 011351          275 LEAGSDGRVAAVKL---------------EDGSTIDADTIVIGIGAKPTV  309 (488)
Q Consensus       275 i~~~~~~~v~~v~l---------------~~g~~i~~D~vi~a~G~~p~~  309 (488)
                      +..  .+.+..+..               .++.++.+|.+|+|||..|..
T Consensus       208 i~~--~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~~  255 (965)
T 2gag_A          208 SYD--ANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHERP  255 (965)
T ss_dssp             EET--TTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEECC
T ss_pred             eec--CCceeeeEeecccccccccccCCCCceEEEECCEEEECCCCccCC
Confidence            863  232222211               112368999999999998764

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=97.54  E-value=7.5e-05  Score=75.87  Aligned_cols=39  Identities=18%  Similarity=0.353  Sum_probs=34.7

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~   90 (488)
                      ++.++|+|||||+|||+||..|++.|.   +|+|+|+.+...
T Consensus         9 ~~~~~v~IIGaG~aGl~aA~~L~~~g~---~v~v~E~~~~~G   47 (489)
T 2jae_A            9 KGSHSVVVLGGGPAGLCSAFELQKAGY---KVTVLEARTRPG   47 (489)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSC
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCC---CEEEEeccCCCC
Confidence            456799999999999999999999987   899999987643

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=97.52  E-value=8e-05  Score=73.01  Aligned_cols=40  Identities=25%  Similarity=0.417  Sum_probs=34.9

Q ss_pred             CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011351           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (488)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~   90 (488)
                      ....+||+|||||++|+++|..|++.|.   +|+|+|+.+...
T Consensus        26 ~~~~~dv~IIGaG~aGl~aA~~l~~~g~---~v~v~E~~~~~G   65 (397)
T 3hdq_A           26 ESKGFDYLIVGAGFAGSVLAERLASSGQ---RVLIVDRRPHIG   65 (397)
T ss_dssp             CCCCEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSS
T ss_pred             cCCCCCEEEECccHHHHHHHHHHHHCCC---ceEEEeccCCCC
Confidence            3456899999999999999999999987   899999987643

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.52  E-value=2.7e-05  Score=78.27  Aligned_cols=89  Identities=15%  Similarity=0.203  Sum_probs=68.0

Q ss_pred             CCeEEEECCCHHHHHHHHHHHh-C------CCcEEEEecCCcCccc---------ccCHHHHHHHHHHHHHcCcEEEcCC
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVG-W------KLDTTIIFPENHLLQR---------LFTPSLAQRYEQLYQQNGVKFVKGA  270 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~-~------g~~v~lv~~~~~~l~~---------~~~~~~~~~~~~~l~~~GV~v~~~~  270 (488)
                      .++|+|||+|+.|+.+|..|.+ .      +.+|+++++.+.+...         ....++...+.+.+++.||+++.+.
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~~gv~p~~~~~~~~~~~~~~~~~~~~v~~~~~v   82 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNV   82 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccccccCCCCCCHHHHHHHHHHHHhcCCCEEEeeE
Confidence            4689999999999999999998 7      8999999998765321         1223566677777888899999885


Q ss_pred             eEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCc
Q 011351          271 SIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  306 (488)
Q Consensus       271 ~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~  306 (488)
                      .+     +  .   .|.++++ ++.+|.||+|||..
T Consensus        83 ~v-----~--~---~v~~~~~-~~~~d~lViAtG~~  107 (456)
T 1lqt_A           83 VV-----G--E---HVQPGEL-SERYDAVIYAVGAQ  107 (456)
T ss_dssp             CB-----T--T---TBCHHHH-HHHSSEEEECCCCC
T ss_pred             EE-----C--C---EEEECCC-eEeCCEEEEeeCCC
Confidence            43     1  1   2444555 48899999999997

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=97.49  E-value=7.5e-05  Score=76.61  Aligned_cols=44  Identities=23%  Similarity=0.244  Sum_probs=34.7

Q ss_pred             HH-CCCeEEeCCcEEEEeCCC--c--EEEeCCCcEEEeccEEeccCCCCC
Q 011351          131 KE-KGIEMIYQDPVTSIDIEK--Q--TLITNSGKLLKYGSLIVATGCTAS  175 (488)
Q Consensus       131 ~~-~~i~~~~~~~v~~id~~~--~--~v~~~~g~~i~yd~lVlAtG~~~~  175 (488)
                      .+ .|++++.+ +|++++.+.  .  .|++.+|.++.+|.||.|+|....
T Consensus       186 ~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S~  234 (526)
T 2pyx_A          186 TQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKSL  234 (526)
T ss_dssp             HHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGCC
T ss_pred             HhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcchH
Confidence            45 79999998 699997642  2  566777777999999999998654

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=97.48  E-value=8e-05  Score=75.34  Aligned_cols=39  Identities=23%  Similarity=0.180  Sum_probs=33.7

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   89 (488)
                      +++||+|||||++|+++|++|++.|. +.+|+|+|+++..
T Consensus         3 ~~~~v~IiGaG~~Gl~~A~~L~~~g~-~~~v~v~E~~~~~   41 (475)
T 3lov_A            3 SSKRLVIVGGGITGLAAAYYAERAFP-DLNITLLEAGERL   41 (475)
T ss_dssp             CSCEEEEECCBHHHHHHHHHHHHHCT-TSEEEEECSSSSS
T ss_pred             CcccEEEECCCHHHHHHHHHHHHhCC-CCCEEEEECCCCC
Confidence            35799999999999999999999982 3489999997654

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.46  E-value=0.00014  Score=76.84  Aligned_cols=87  Identities=17%  Similarity=0.288  Sum_probs=66.0

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc-----ccC-----HHHHHHHHHHHHHcCcEEEcCCeEEEEE
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----LFT-----PSLAQRYEQLYQQNGVKFVKGASIKNLE  276 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~-----~~~-----~~~~~~~~~~l~~~GV~v~~~~~v~~i~  276 (488)
                      .++|+|||+|+.|+.+|..|++.|.+|+++++.+.+-..     .++     .+....+.+.+++.||++++++.++.  
T Consensus       373 ~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~--  450 (671)
T 1ps9_A          373 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVTA--  450 (671)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCCS--
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeeeccccCCCHHHHHHHHHHHHHHHHHcCCEEEeCcEecH--
Confidence            468999999999999999999999999999988654211     011     13345566778888999998875421  


Q ss_pred             eCCCCcEEEEEeCCCcEE-EcCEEEEeecCccCCh
Q 011351          277 AGSDGRVAAVKLEDGSTI-DADTIVIGIGAKPTVS  310 (488)
Q Consensus       277 ~~~~~~v~~v~l~~g~~i-~~D~vi~a~G~~p~~~  310 (488)
                                     ..+ .+|.||+|||.+|...
T Consensus       451 ---------------~~~~~~d~lviAtG~~p~~~  470 (671)
T 1ps9_A          451 ---------------DQLQAFDETILASGIVPRTP  470 (671)
T ss_dssp             ---------------SSSCCSSEEEECCCEEECCC
T ss_pred             ---------------HHhhcCCEEEEccCCCcCCC
Confidence                           124 8999999999988753

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=97.45  E-value=0.00095  Score=67.90  Aligned_cols=56  Identities=14%  Similarity=0.159  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEeecCccC
Q 011351          251 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKPT  308 (488)
Q Consensus       251 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l---~~g~--~i~~D~vi~a~G~~p~  308 (488)
                      +...+.+.+++.|++++.+++|+++..++  .+..|.+   .+|+  ++.+|.||.|+|....
T Consensus       151 l~~~l~~~a~~~Gv~i~~~~~V~~l~~~~--~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s~  211 (501)
T 2qcu_A          151 LVLANAQMVVRKGGEVLTRTRATSARREN--GLWIVEAEDIDTGKKYSWQARGLVNATGPWVK  211 (501)
T ss_dssp             HHHHHHHHHHHTTCEEECSEEEEEEEEET--TEEEEEEEETTTCCEEEEEESCEEECCGGGHH
T ss_pred             HHHHHHHHHHHcCCEEEcCcEEEEEEEeC--CEEEEEEEECCCCCEEEEECCEEEECCChhHH
Confidence            34455666778899999999999998643  4556666   3565  7999999999998754

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=97.45  E-value=0.0014  Score=67.96  Aligned_cols=52  Identities=21%  Similarity=0.222  Sum_probs=40.0

Q ss_pred             HHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEeecCc
Q 011351          255 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAK  306 (488)
Q Consensus       255 ~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l---~~g~--~i~~D~vi~a~G~~  306 (488)
                      +.+.+++.||+++.++.++++..++++++.+|..   .+|+  ++.++.||+|+|-.
T Consensus       149 L~~~~~~~gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~  205 (588)
T 2wdq_A          149 LYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGA  205 (588)
T ss_dssp             HHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCCC
T ss_pred             HHHHHHhCCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCCC
Confidence            4455567799999999999998643567766664   4665  58999999999963

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=97.43  E-value=0.00012  Score=74.33  Aligned_cols=39  Identities=21%  Similarity=0.173  Sum_probs=34.0

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   89 (488)
                      +++++|+|||||++|+++|..|++.|.  .+|+|+|+++..
T Consensus         7 ~~~~~v~iiG~G~~Gl~~A~~l~~~g~--~~v~v~E~~~~~   45 (484)
T 4dsg_A            7 LLTPKIVIIGAGPTGLGAAVRLTELGY--KNWHLYECNDTP   45 (484)
T ss_dssp             CCSCCEEEECCSHHHHHHHHHHHHTTC--CSEEEEESSSSS
T ss_pred             ccCCCEEEECcCHHHHHHHHHHHHcCC--CCEEEEeCCCCC
Confidence            456899999999999999999999872  289999998764

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=97.42  E-value=0.0001  Score=72.19  Aligned_cols=35  Identities=20%  Similarity=0.210  Sum_probs=31.7

Q ss_pred             CeEEEEcCchHHHHHHHHHHHc--CCCCCcEEEEcCCCCC
Q 011351           52 REFVIVGGGNAAGYAARTFVEH--GMADGRLCIVSKEAYA   89 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~--g~~~~~V~lie~~~~~   89 (488)
                      ++|+|||||++|+++|..|++.  |.   +|+|+|+.+..
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~---~V~v~E~~~~~   37 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLW---AIDIVEKNDEQ   37 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTS---EEEEECSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCC---CEEEEECCCCC
Confidence            4899999999999999999998  77   89999998654

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=97.41  E-value=0.0001  Score=74.61  Aligned_cols=38  Identities=18%  Similarity=0.276  Sum_probs=32.8

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   89 (488)
                      ..++||+|||||++|++||..|++.|+   +|+|+|+++..
T Consensus        14 ~~~~~v~iiG~G~~Gl~aa~~l~~~g~---~v~v~E~~~~~   51 (478)
T 2ivd_A           14 TTGMNVAVVGGGISGLAVAHHLRSRGT---DAVLLESSARL   51 (478)
T ss_dssp             ---CCEEEECCBHHHHHHHHHHHTTTC---CEEEECSSSSS
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCC---CEEEEEcCCCC
Confidence            456899999999999999999999987   89999998764

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=97.39  E-value=8.7e-05  Score=71.81  Aligned_cols=36  Identities=14%  Similarity=0.073  Sum_probs=30.8

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCC---CCCcEEEEcCCC
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGM---ADGRLCIVSKEA   87 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~---~~~~V~lie~~~   87 (488)
                      +||+|||||++|+++|++|+++|.   ++.+|+|+|++.
T Consensus         1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~   39 (351)
T 3g3e_A            1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF   39 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence            489999999999999999999971   123899999986

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=97.39  E-value=0.001  Score=68.67  Aligned_cols=61  Identities=18%  Similarity=0.147  Sum_probs=44.5

Q ss_pred             HHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCC---C--cEEEcCEEEEeecCccCChhhhhcC
Q 011351          254 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---G--STIDADTIVIGIGAKPTVSPFERVG  316 (488)
Q Consensus       254 ~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~---g--~~i~~D~vi~a~G~~p~~~~~~~~g  316 (488)
                      .+.+.+++.|++++++++|+++..+ ++++.+|.+.+   |  .++.+|.||.|+|.... .+.+..+
T Consensus       175 ~L~~~a~~~G~~i~~~~~V~~l~~~-~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s~-~l~~~~g  240 (561)
T 3da1_A          175 EIMKEAVARGAVALNYMKVESFIYD-QGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWVD-TLREKDR  240 (561)
T ss_dssp             HHHHHHHHTTCEEEESEEEEEEEEE-TTEEEEEEEEETTTCCEEEEEEEEEEECCGGGHH-HHHHTTT
T ss_pred             HHHHHHHHcCCEEEcCCEEEEEEEc-CCeEEEEEEEEcCCCceEEEECCEEEECCCcchH-HHHHhcC
Confidence            3445567789999999999999864 56666677654   3  46899999999997653 3444443

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=97.38  E-value=0.00092  Score=67.42  Aligned_cols=97  Identities=19%  Similarity=0.281  Sum_probs=70.2

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc----------c--------------------------------
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------L--------------------------------  246 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~----------~--------------------------------  246 (488)
                      .|+|||+|..|+-+|..|++.|.+|+++++.. ....          .                                
T Consensus         1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~~-~~g~s~~a~Ggi~~~~~~~d~~~~~~~d~l~~g~~~~d~~~v~~~~~   79 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKRI-DGGSTPIAKGGVAASVGSDDSPELHAQDTIRVGDGLCDVKTVNYVTS   79 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSST-TCSSGGGCCSCEECCCSTTCCHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC-CCchHHHHhCCeEEeCCCCCCHHHHHHHHHHhcCCcCCHHHHHHHHH
Confidence            37999999999999999999999999998761 0000          0                                


Q ss_pred             ---------------c----------------------CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC
Q 011351          247 ---------------F----------------------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE  289 (488)
Q Consensus       247 ---------------~----------------------~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~  289 (488)
                                     +                      ...+...+.+.+++.||+++.++.+ ++..+ ++++.++...
T Consensus        80 ~~~~~i~~l~~~Gv~~~~~~~~~~g~~~~r~~~~~d~~g~~l~~~L~~~~~~~gv~i~~~~~v-~l~~~-~~~v~Gv~v~  157 (472)
T 2e5v_A           80 EAKNVIETFESWGFEFEEDLRLEGGHTKRRVLHRTDETGREIFNFLLKLAREEGIPIIEDRLV-EIRVK-DGKVTGFVTE  157 (472)
T ss_dssp             HHHHHHHHHHHTTCCCCSSCBCCTTCSSCCEECSSSCHHHHHHHHHHHHHHHTTCCEECCCEE-EEEEE-TTEEEEEEET
T ss_pred             HHHHHHHHHHHcCCCCCcccccccCcCcCcEEEeCCCCHHHHHHHHHHHHHhCCCEEEECcEE-EEEEe-CCEEEEEEEE
Confidence                           0                      0123444555567789999999999 98754 4666666553


Q ss_pred             -CCcEEEcCEEEEeecCccC
Q 011351          290 -DGSTIDADTIVIGIGAKPT  308 (488)
Q Consensus       290 -~g~~i~~D~vi~a~G~~p~  308 (488)
                       ++.++.+|.||+|+|..+.
T Consensus       158 ~~~g~~~a~~VVlAtGg~~~  177 (472)
T 2e5v_A          158 KRGLVEDVDKLVLATGGYSY  177 (472)
T ss_dssp             TTEEECCCSEEEECCCCCGG
T ss_pred             eCCCeEEeeeEEECCCCCcc
Confidence             2335789999999998764

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=97.37  E-value=0.00013  Score=74.37  Aligned_cols=38  Identities=21%  Similarity=0.347  Sum_probs=33.8

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~   90 (488)
                      ++++|+|||||++||+||..|++.|+   +|+|+|+++...
T Consensus        12 ~~~~v~iiG~G~~Gl~aA~~l~~~g~---~v~v~E~~~~~G   49 (504)
T 1sez_A           12 SAKRVAVIGAGVSGLAAAYKLKIHGL---NVTVFEAEGKAG   49 (504)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHTTSC---EEEEECSSSSSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC---cEEEEEeCCCCC
Confidence            45899999999999999999999987   899999997653

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=97.34  E-value=0.00017  Score=73.35  Aligned_cols=38  Identities=24%  Similarity=0.335  Sum_probs=34.2

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   89 (488)
                      ..+++|+|||||++|++||..|++.|.   +|+|+|+.+..
T Consensus        31 ~~~~~v~IiGaG~~Gl~aA~~l~~~g~---~v~vlE~~~~~   68 (498)
T 2iid_A           31 SNPKHVVIVGAGMAGLSAAYVLAGAGH---QVTVLEASERP   68 (498)
T ss_dssp             SSCCEEEEECCBHHHHHHHHHHHHHTC---EEEEECSSSSS
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCC---eEEEEECCCCC
Confidence            446899999999999999999999987   89999998754

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=97.33  E-value=0.00015  Score=73.77  Aligned_cols=56  Identities=20%  Similarity=0.323  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHHcC-cEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCc
Q 011351          249 PSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  306 (488)
Q Consensus       249 ~~~~~~~~~~l~~~G-V~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~  306 (488)
                      ..+.+.+.+.+++.| +++++++.|++|+..+ +.+ .|.+.+|+++.+|.||+|+|..
T Consensus       255 ~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~~-~~v-~v~~~~g~~~~ad~vI~a~~~~  311 (495)
T 2vvm_A          255 SAFARRFWEEAAGTGRLGYVFGCPVRSVVNER-DAA-RVTARDGREFVAKRVVCTIPLN  311 (495)
T ss_dssp             HHHHHHHHHHHHTTTCEEEESSCCEEEEEECS-SSE-EEEETTCCEEEEEEEEECCCGG
T ss_pred             HHHHHHHHHHhhhcCceEEEeCCEEEEEEEcC-CEE-EEEECCCCEEEcCEEEECCCHH
Confidence            356777778888888 9999999999998653 334 5788888889999999999963

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=97.33  E-value=0.00016  Score=70.90  Aligned_cols=37  Identities=22%  Similarity=0.444  Sum_probs=33.2

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~   90 (488)
                      +++|+|||||++|+++|..|++.|.   +|+|+|+++...
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~~g~---~v~v~E~~~~~G   39 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAEKGH---QVHIIDQRDHIG   39 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTC---EEEEEESSSSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCC---cEEEEEecCCcC
Confidence            4799999999999999999999876   899999987653

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=97.30  E-value=0.00021  Score=68.83  Aligned_cols=35  Identities=23%  Similarity=0.283  Sum_probs=32.1

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      ++||+|||||+||+.||..|++.|.   +|+|+|+.+.
T Consensus         1 m~dViVIGgG~AG~~AA~~la~~G~---~V~liE~~~~   35 (443)
T 3g5s_A            1 MERVNVVGAGLAGSEAAWTLLRLGV---PVRLFEMRPK   35 (443)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTC---CEEEECCTTT
T ss_pred             CCCEEEECchHHHHHHHHHHHHCCC---cEEEEeccCC
Confidence            3689999999999999999999987   8999998864

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=97.26  E-value=0.00019  Score=70.02  Aligned_cols=35  Identities=17%  Similarity=0.345  Sum_probs=32.1

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   89 (488)
                      +||+|||||++|+++|..|++.|.   +|+|+|+++..
T Consensus         2 ~~v~iiG~G~~Gl~~A~~l~~~g~---~v~v~E~~~~~   36 (367)
T 1i8t_A            2 YDYIIVGSGLFGAVCANELKKLNK---KVLVIEKRNHI   36 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTC---CEEEECSSSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCC---cEEEEecCCCC
Confidence            589999999999999999999987   89999998754

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.24  E-value=0.00018  Score=76.66  Aligned_cols=98  Identities=19%  Similarity=0.212  Sum_probs=69.2

Q ss_pred             CCCeEEEEc--CchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCH
Q 011351           50 ENREFVIVG--GGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP  127 (488)
Q Consensus        50 ~~~~vvIIG--gG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (488)
                      ..++|+|||  ||..|+.+|..|++.|.   +|+|+++.+ ..-       ....+..                 .....
T Consensus       527 ~gk~VvVIG~GgG~~g~e~A~~l~~~G~---~Vtlv~~~~-l~~-------~~~~~~~-----------------~~~~~  578 (729)
T 1o94_A          527 IGKRVVILNADTYFMAPSLAEKLATAGH---EVTIVSGVH-LAN-------YMHFTLE-----------------YPNMM  578 (729)
T ss_dssp             CCSEEEEEECCCSSHHHHHHHHHHHTTC---EEEEEESSC-TTH-------HHHHTTC-----------------HHHHH
T ss_pred             CCCeEEEEcCCCCchHHHHHHHHHHcCC---EEEEEeccc-ccc-------ccccccc-----------------HHHHH
Confidence            357999999  99999999999999986   899999875 210       0000000                 01234


Q ss_pred             hHHHHCCCeEEeCCcEEEEeCCCcEEEe--CCC-cE------------------EEeccEEeccCCCCC
Q 011351          128 EWYKEKGIEMIYQDPVTSIDIEKQTLIT--NSG-KL------------------LKYGSLIVATGCTAS  175 (488)
Q Consensus       128 ~~~~~~~i~~~~~~~v~~id~~~~~v~~--~~g-~~------------------i~yd~lVlAtG~~~~  175 (488)
                      +.+++.||+++.++.+.+++.+...+..  .++ +.                  +.+|.||+|+|..|.
T Consensus       579 ~~l~~~GV~i~~~~~v~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~  647 (729)
T 1o94_A          579 RRLHELHVEELGDHFCSRIEPGRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSE  647 (729)
T ss_dssp             HHHHHTTCEEECSEEEEEEETTEEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEEC
T ss_pred             HHHHhCCCEEEcCcEEEEEECCeEEEEEecCCceEEecccccccccccCCcceeeeCCEEEECCCCCCC
Confidence            5667889999999999999865433332  232 32                  899999999997654

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=97.23  E-value=0.00026  Score=69.40  Aligned_cols=87  Identities=15%  Similarity=0.193  Sum_probs=67.4

Q ss_pred             eEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCcC----------------------c-cc------------------
Q 011351          209 KVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHL----------------------L-QR------------------  245 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~--g~~v~lv~~~~~~----------------------l-~~------------------  245 (488)
                      +|+|||+|+.|+.+|..|++.  |.+|+++++.+.+                      . ..                  
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   81 (381)
T 3c4a_A            2 KILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLDAPERLNPQFLEDFKLVHHN   81 (381)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCTTCGGGGSSCGGGGCCEEECCEEEEESS
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhhcCcchhhhhhHHHhhccccceEEEeCC
Confidence            689999999999999999998  9999999987543                      0 00                  


Q ss_pred             -------------ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351          246 -------------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  308 (488)
Q Consensus       246 -------------~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~  308 (488)
                                   .....+.+.+.+.+++.|++++++++|++++..             +++.+|.||.|.|....
T Consensus        82 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~-------------~~~~ad~vV~AdG~~S~  144 (381)
T 3c4a_A           82 EPSLMSTGVLLCGVERRGLVHALRDKCRSQGIAIRFESPLLEHGEL-------------PLADYDLVVLANGVNHK  144 (381)
T ss_dssp             SEEECCCCSCEEEEEHHHHHHHHHHHHHHTTCEEETTCCCCSGGGC-------------CGGGCSEEEECCGGGGG
T ss_pred             eeEEecCCCceeeecHHHHHHHHHHHHHHCCCEEEeCCEeccchhc-------------ccccCCEEEECCCCCch
Confidence                         001345677777788889999999988877521             13689999999998653

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=97.21  E-value=0.0015  Score=68.44  Aligned_cols=100  Identities=19%  Similarity=0.267  Sum_probs=73.5

Q ss_pred             CeEEEECCCHHHHHHHHHHHh-CCCcEEEEecCCcCcc------------------------------------------
Q 011351          208 KKVVVVGGGYIGMEVAAAAVG-WKLDTTIIFPENHLLQ------------------------------------------  244 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~-~g~~v~lv~~~~~~l~------------------------------------------  244 (488)
                      ..|+|||+|+.|+-+|..|++ .|.+|+++++.+.+..                                          
T Consensus        33 ~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~~~g~a~~l~~~t~e~l~~lGl~~~~~~~~~~~~~~~~~~~~~~  112 (639)
T 2dkh_A           33 VDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADGIACRTMEMFEAFEFADSILKEACWINDVTFWKPDPG  112 (639)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCCSSCSCCEECHHHHHHHHHTTCHHHHHHHSEEECEEEEEEECTT
T ss_pred             CcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCcHHHHHHhcccccceEEECCCCC
Confidence            369999999999999999999 9999999987632100                                          


Q ss_pred             --c---------------------ccC-HHHHHHHHHHHHHcCc--EEEcCCeEEEEEeCCC--CcEEEEEeC------C
Q 011351          245 --R---------------------LFT-PSLAQRYEQLYQQNGV--KFVKGASIKNLEAGSD--GRVAAVKLE------D  290 (488)
Q Consensus       245 --~---------------------~~~-~~~~~~~~~~l~~~GV--~v~~~~~v~~i~~~~~--~~v~~v~l~------~  290 (488)
                        .                     .++ ..+.+.+.+.+++.|+  ++++++++++++.+++  +..+.+.+.      +
T Consensus       113 ~~g~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~~~  192 (639)
T 2dkh_A          113 QPGRIARHGRVQDTEDGLSEFPHVILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAHA  192 (639)
T ss_dssp             STTCEEEEEEEESSCTTSCSSCEEECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGGGT
T ss_pred             CCcceEeecccCcccCCCCCCceEeeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEeccccCC
Confidence              0                     000 1455667777888876  9999999999987542  212245544      4


Q ss_pred             C--cEEEcCEEEEeecCcc
Q 011351          291 G--STIDADTIVIGIGAKP  307 (488)
Q Consensus       291 g--~~i~~D~vi~a~G~~p  307 (488)
                      |  +++.+|+||.|.|...
T Consensus       193 G~~~~i~a~~vVgADG~~S  211 (639)
T 2dkh_A          193 GQIETVQARYVVGCDGARS  211 (639)
T ss_dssp             TCEEEEEEEEEEECCCTTC
T ss_pred             CCeEEEEeCEEEECCCcch
Confidence            6  4799999999999764

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=97.13  E-value=0.0022  Score=66.68  Aligned_cols=96  Identities=19%  Similarity=0.249  Sum_probs=70.0

Q ss_pred             eEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCcCccc------------------------------c----------
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQR------------------------------L----------  246 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g--~~v~lv~~~~~~l~~------------------------------~----------  246 (488)
                      .|+|||+|..|+-+|..|++.|  .+|+++++.+.....                              .          
T Consensus         7 DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~~~~s~~a~GGi~~~~~~~ds~~~~~~d~~~~g~~~~d~~~v~~~   86 (602)
T 1kf6_A            7 DLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVVDYF   86 (602)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGGGGCCSCEECCCSTTCCHHHHHHHHHHHTTTCSCHHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCCCChHHHhcCccEEeCCCCCCHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            5999999999999999999999  999999876321000                              0          


Q ss_pred             -----------------c----------------------------CHHHHHHHHHHHHHcC-cEEEcCCeEEEEEeCCC
Q 011351          247 -----------------F----------------------------TPSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSD  280 (488)
Q Consensus       247 -----------------~----------------------------~~~~~~~~~~~l~~~G-V~v~~~~~v~~i~~~~~  280 (488)
                                       +                            +..+...+.+.+++.| |+++.++.++++..+ +
T Consensus        87 ~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~d~tg~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~~-~  165 (602)
T 1kf6_A           87 VHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVD-D  165 (602)
T ss_dssp             HHHHHHHHHHHHHTTCCCCBCTTSSBCCBCCTTCSSCCEECSTTCHHHHHHHHHHHHHTTCTTEEEEETEEEEEEEEE-T
T ss_pred             HHHHHHHHHHHHHcCCCcccCCCCcccccccCCccCCeEEEcCCCCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEe-C
Confidence                             0                            0123334445556677 999999999999864 5


Q ss_pred             CcEEEEEe---CCCc--EEEcCEEEEeecC
Q 011351          281 GRVAAVKL---EDGS--TIDADTIVIGIGA  305 (488)
Q Consensus       281 ~~v~~v~l---~~g~--~i~~D~vi~a~G~  305 (488)
                      +++.++..   .+|+  .+.++.||+|+|.
T Consensus       166 g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg  195 (602)
T 1kf6_A          166 GHVRGLVAMNMMEGTLVQIRANAVVMATGG  195 (602)
T ss_dssp             TEEEEEEEEETTTTEEEEEECSCEEECCCC
T ss_pred             CEEEEEEEEEcCCCcEEEEEcCeEEECCCC
Confidence            66655543   5776  6899999999994

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=97.13  E-value=0.00041  Score=69.20  Aligned_cols=58  Identities=17%  Similarity=0.350  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351          249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  308 (488)
Q Consensus       249 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~  308 (488)
                      ..+.+.+.+.+++.|+++++++.|++|... ++++..+. .+|+++.||.||+++|..+.
T Consensus       234 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~-~~~v~~v~-~~g~~~~ad~VV~a~~~~~~  291 (433)
T 1d5t_A          234 GELPQGFARLSAIYGGTYMLNKPVDDIIME-NGKVVGVK-SEGEVARCKQLICDPSYVPD  291 (433)
T ss_dssp             THHHHHHHHHHHHHTCCCBCSCCCCEEEEE-TTEEEEEE-ETTEEEECSEEEECGGGCGG
T ss_pred             HHHHHHHHHHHHHcCCEEECCCEEEEEEEe-CCEEEEEE-ECCeEEECCEEEECCCCCcc
Confidence            467778888888999999999999999864 46665555 47888999999999998864

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=97.10  E-value=0.00024  Score=73.48  Aligned_cols=59  Identities=14%  Similarity=0.120  Sum_probs=45.0

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeC---CCc--EEEcCEEEEeecCcc
Q 011351          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGAKP  307 (488)
Q Consensus       248 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~---~g~--~i~~D~vi~a~G~~p  307 (488)
                      +..+...+.+.+++.|++++.+++|+++..+ ++.+.+|.+.   +|+  ++.+|.||+|+|...
T Consensus       187 ~~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~~-~~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~ws  250 (571)
T 2rgh_A          187 DARLVIDNIKKAAEDGAYLVSKMKAVGFLYE-GDQIVGVKARDLLTDEVIEIKAKLVINTSGPWV  250 (571)
T ss_dssp             HHHHHHHHHHHHHHTTCEEESSEEEEEEEEE-TTEEEEEEEEETTTCCEEEEEBSCEEECCGGGH
T ss_pred             hHHHHHHHHHHHHHcCCeEEeccEEEEEEEe-CCEEEEEEEEEcCCCCEEEEEcCEEEECCChhH
Confidence            3455666667788899999999999999865 4566666653   343  699999999999764

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=97.07  E-value=0.0028  Score=65.20  Aligned_cols=95  Identities=19%  Similarity=0.303  Sum_probs=67.9

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc-------------------------------------------
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------------------------------------------  244 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~-------------------------------------------  244 (488)
                      ..|+|||+|+.|+-+|..|++.|.+|+++++.+.+..                                           
T Consensus        27 ~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~~  106 (549)
T 2r0c_A           27 TDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRWGVAKQIRTAGWPGDHPLDAAWVTRV  106 (549)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSSCCCCEECHHHHHHHHHTTCHHHHHTSSCCTTSBCCEEEESSB
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCChHHHHhhcCCcccccceEEeccC
Confidence            3699999999999999999999999999997632210                                           


Q ss_pred             -c-c---c---------------------C-HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCC---C--c
Q 011351          245 -R-L---F---------------------T-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---G--S  292 (488)
Q Consensus       245 -~-~---~---------------------~-~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~---g--~  292 (488)
                       . .   +                     + ..+.+.+.+.+++.   +++++++++++.++++ + .+++.+   |  +
T Consensus       107 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~---v~~~~~v~~~~~~~~~-v-~v~~~~~~~G~~~  181 (549)
T 2r0c_A          107 GGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLLAEAVGER---LRTRSRLDSFEQRDDH-V-RATITDLRTGATR  181 (549)
T ss_dssp             TSCEEEEECCCBTTTSCCCSSCSSCCEECCHHHHHHHHHHHHGGG---EECSEEEEEEEECSSC-E-EEEEEETTTCCEE
T ss_pred             CCceeEeecccccccccccCCCCCcccccCHHHHHHHHHHHHHHh---cccCcEEEEEEEeCCE-E-EEEEEECCCCCEE
Confidence             0 0   0                     0 12334455555554   8899999999876444 3 355544   6  4


Q ss_pred             EEEcCEEEEeecCcc
Q 011351          293 TIDADTIVIGIGAKP  307 (488)
Q Consensus       293 ~i~~D~vi~a~G~~p  307 (488)
                      ++.+|+||.|.|...
T Consensus       182 ~i~a~~vVgADG~~S  196 (549)
T 2r0c_A          182 AVHARYLVACDGASS  196 (549)
T ss_dssp             EEEEEEEEECCCTTC
T ss_pred             EEEeCEEEECCCCCc
Confidence            799999999999865

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=97.03  E-value=0.00048  Score=68.99  Aligned_cols=58  Identities=16%  Similarity=0.315  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCc
Q 011351          249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  306 (488)
Q Consensus       249 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~  306 (488)
                      .++.+.+.+.+++.|+++++++.|++|..++++++.+|.+.+|+++.||.||++++..
T Consensus       256 ~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI~a~~~~  313 (475)
T 3p1w_A          256 GGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSYV  313 (475)
T ss_dssp             THHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECGGGC
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECCEEEECCCcc
Confidence            4778888899999999999999999998745778889999999999999999999988

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=97.03  E-value=0.00027  Score=74.05  Aligned_cols=39  Identities=21%  Similarity=0.158  Sum_probs=32.4

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCC-----CCCcEEEEcCCC-CC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGM-----ADGRLCIVSKEA-YA   89 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~-----~~~~V~lie~~~-~~   89 (488)
                      .++|+|||||++||+||..|.+.|.     +..+|+|+|+++ ..
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~  100 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF  100 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence            4789999999999999999999871     013899999987 54

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=96.97  E-value=0.0081  Score=61.98  Aligned_cols=35  Identities=26%  Similarity=0.443  Sum_probs=31.7

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  240 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~  240 (488)
                      ....|+|||||.+|+-+|..|+++|.+|+++++.+
T Consensus        31 ~~~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~~   65 (571)
T 2rgh_A           31 EELDLLIIGGGITGAGVAVQAAASGIKTGLIEMQD   65 (571)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            44679999999999999999999999999999764

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=96.97  E-value=0.002  Score=66.06  Aligned_cols=32  Identities=16%  Similarity=0.329  Sum_probs=29.3

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  240 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~  240 (488)
                      -.|+|||+|..|+-+|..+++ |.+|+++++.+
T Consensus         9 ~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~   40 (540)
T 1chu_A            9 CDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGP   40 (540)
T ss_dssp             CSEEEECCSHHHHHHHHHHTT-TSCEEEECSSC
T ss_pred             CCEEEECccHHHHHHHHHHhc-CCcEEEEECCC
Confidence            369999999999999999999 99999998875

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=96.96  E-value=0.00042  Score=72.75  Aligned_cols=36  Identities=28%  Similarity=0.450  Sum_probs=31.9

Q ss_pred             CCCeEEEEcCchHHHHHHHHHH---H-cCCCCCcEEEEcCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFV---E-HGMADGRLCIVSKEAY   88 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~---~-~g~~~~~V~lie~~~~   88 (488)
                      ..+||||||||+||++||.+|+   + .|.   +|+||||.+.
T Consensus        21 ~~~DVvVIG~G~AGl~AAl~aa~~~~~~G~---~V~vlEK~~~   60 (643)
T 1jnr_A           21 VETDILIIGGGFSGCGAAYEAAYWAKLGGL---KVTLVEKAAV   60 (643)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHTTTTC---CEEEECSSCT
T ss_pred             ccCCEEEECcCHHHHHHHHHHhhhhhhCCC---eEEEEeCcCC
Confidence            3579999999999999999999   5 776   8999999864

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=96.95  E-value=0.0053  Score=63.83  Aligned_cols=51  Identities=20%  Similarity=0.180  Sum_probs=38.1

Q ss_pred             HHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEeecCcc
Q 011351          256 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKP  307 (488)
Q Consensus       256 ~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l---~~g~--~i~~D~vi~a~G~~p  307 (488)
                      .+.+.+.||+++.++.++++..+ ++++.+|..   .+|+  .+.++.||+|+|-..
T Consensus       162 ~~~~~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~  217 (621)
T 2h88_A          162 YGRSLRYDTSYFVEYFALDLLME-NGECRGVIALCIEDGTIHRFRAKNTVIATGGYG  217 (621)
T ss_dssp             HHHHTTSCCEEEETEEEEEEEEE-TTEEEEEEEEETTTCCEEEEEEEEEEECCCCCG
T ss_pred             HHHHHhCCCEEEEceEEEEEEEE-CCEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence            33445578999999999999754 567766665   4675  689999999999643

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=96.92  E-value=0.00078  Score=70.99  Aligned_cols=38  Identities=21%  Similarity=0.389  Sum_probs=34.3

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   89 (488)
                      ...++|+|||||++|+++|..|.+.|+   +|+|+|+.+..
T Consensus       105 ~~~~~v~viG~G~~gl~~a~~l~~~g~---~v~~~e~~~~~  142 (662)
T 2z3y_A          105 KKTGKVIIIGSGVSGLAAARQLQSFGM---DVTLLEARDRV  142 (662)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTC---EEEEECSSSSS
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHHCCC---eEEEEecCCCC
Confidence            456899999999999999999999987   89999998764

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=96.87  E-value=0.00097  Score=71.76  Aligned_cols=39  Identities=21%  Similarity=0.365  Sum_probs=34.7

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~   90 (488)
                      ...++|+|||||++||+||..|++.|+   +|+|+|+.+...
T Consensus       276 ~~~~~v~viG~G~aGl~~A~~l~~~g~---~v~v~E~~~~~G  314 (852)
T 2xag_A          276 KKTGKVIIIGSGVSGLAAARQLQSFGM---DVTLLEARDRVG  314 (852)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCC---cEEEEEecCcCC
Confidence            456899999999999999999999988   899999987643

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=96.80  E-value=0.0016  Score=66.26  Aligned_cols=31  Identities=23%  Similarity=0.213  Sum_probs=28.5

Q ss_pred             eEEEECCCHHHHHHHHHHHh-CCCcEEEEecC
Q 011351          209 KVVVVGGGYIGMEVAAAAVG-WKLDTTIIFPE  239 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~-~g~~v~lv~~~  239 (488)
                      .|+|||+|++|+-+|..|++ .|.+|+|++.+
T Consensus        12 DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~   43 (513)
T 4gde_A           12 DVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSN   43 (513)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCCSCEEEEESS
T ss_pred             CEEEECCcHHHHHHHHHHHhhCCCCEEEEECC
Confidence            59999999999999999987 59999999977

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=96.76  E-value=0.011  Score=61.83  Aligned_cols=51  Identities=18%  Similarity=0.165  Sum_probs=38.1

Q ss_pred             HHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEeecCc
Q 011351          255 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAK  306 (488)
Q Consensus       255 ~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l---~~g~--~i~~D~vi~a~G~~  306 (488)
                      +.+.+++.||+++.++.++++..+ ++++.++..   .+|+  .+.+|.||+|+|-.
T Consensus       164 L~~~a~~~gv~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~  219 (660)
T 2bs2_A          164 VANECLKLGVSIQDRKEAIALIHQ-DGKCYGAVVRDLVTGDIIAYVAKGTLIATGGY  219 (660)
T ss_dssp             HHHHHHHHTCEEECSEEEEEEEEE-TTEEEEEEEEETTTCCEEEEECSEEEECCCCC
T ss_pred             HHHHHHhCCCEEEECcEEEEEEec-CCEEEEEEEEECCCCcEEEEEcCEEEEccCcc
Confidence            344456679999999999999753 566666654   4676  48999999999853

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=96.66  E-value=0.0016  Score=65.73  Aligned_cols=41  Identities=22%  Similarity=0.368  Sum_probs=34.7

Q ss_pred             CcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecC
Q 011351          263 GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  305 (488)
Q Consensus       263 GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~  305 (488)
                      |.++++++.|++|+..+ +.+ .|.+.+|+++.+|.||+|++.
T Consensus       228 ~~~i~~~~~V~~i~~~~-~~v-~v~~~~g~~~~ad~vI~a~~~  268 (472)
T 1b37_A          228 DPRLQLNKVVREIKYSP-GGV-TVKTEDNSVYSADYVMVSASL  268 (472)
T ss_dssp             CTTEESSCCEEEEEECS-SCE-EEEETTSCEEEESEEEECSCH
T ss_pred             ccEEEcCCEEEEEEEcC-CcE-EEEECCCCEEEcCEEEEecCH
Confidence            67899999999998754 444 488899989999999999875

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=96.59  E-value=0.012  Score=61.99  Aligned_cols=31  Identities=29%  Similarity=0.340  Sum_probs=29.3

Q ss_pred             eEEEECCCHHHHHHHHHHHh-----CCCcEEEEecC
Q 011351          209 KVVVVGGGYIGMEVAAAAVG-----WKLDTTIIFPE  239 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~-----~g~~v~lv~~~  239 (488)
                      .|+|||+|+.|+-+|..|++     .|.+|+++++.
T Consensus        10 dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~   45 (665)
T 1pn0_A           10 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKR   45 (665)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSS
T ss_pred             cEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCC
Confidence            69999999999999999999     99999999875

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=96.56  E-value=0.0017  Score=66.77  Aligned_cols=64  Identities=16%  Similarity=0.272  Sum_probs=47.9

Q ss_pred             HHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCC---Cc--EE---EcCEEEEeecCccCChhhhhcCCc
Q 011351          254 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---GS--TI---DADTIVIGIGAKPTVSPFERVGLN  318 (488)
Q Consensus       254 ~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~---g~--~i---~~D~vi~a~G~~p~~~~~~~~gl~  318 (488)
                      ++....++.|+++++++.|+++..+ ++++.+|.+.+   |+  ++   .++.||+|+|......++..+|+.
T Consensus       201 ~l~~~~~~~~~~i~~~~~V~~i~~~-~~~~~gV~~~~~~~g~~~~~~v~~~~~VIlaaG~~~sp~lL~~sGig  272 (546)
T 1kdg_A          201 YLQTALARPNFTFKTNVMVSNVVRN-GSQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIG  272 (546)
T ss_dssp             HHHHHHTCTTEEEECSCCEEEEEEE-TTEEEEEEESCTTSSGGGEEEEEEEEEEEECSHHHHHHHHHHHTTBS
T ss_pred             HHHHHhhCCCcEEEeCCEEEEEEEe-CCEEEEEEEEecCCCceeEEEEEeCCEEEEcCChhcCHHHHHHcCCC
Confidence            4444444469999999999999864 56788888865   64  34   889999999987655777777764

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=96.55  E-value=0.017  Score=61.58  Aligned_cols=42  Identities=17%  Similarity=0.374  Sum_probs=34.9

Q ss_pred             cCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecC
Q 011351          262 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  305 (488)
Q Consensus       262 ~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~  305 (488)
                      .|++|++++.|++|+..++ .+ .|.+.+|+++.+|.||+|+..
T Consensus       542 ~gl~I~l~t~V~~I~~~~~-~v-~V~~~~G~~i~Ad~VIvA~P~  583 (776)
T 4gut_A          542 EGLDIQLKSPVQCIDYSGD-EV-QVTTTDGTGYSAQKVLVTVPL  583 (776)
T ss_dssp             TTSCEESSCCEEEEECSSS-SE-EEEETTCCEEEESEEEECCCH
T ss_pred             hCCcEEcCCeeEEEEEcCC-EE-EEEECCCcEEEcCEEEECCCH
Confidence            3789999999999986544 34 588889989999999999864

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=96.50  E-value=0.014  Score=58.33  Aligned_cols=35  Identities=29%  Similarity=0.425  Sum_probs=31.9

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCC------CcEEEEecCCcC
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWK------LDTTIIFPENHL  242 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g------~~v~lv~~~~~~  242 (488)
                      ++|+|||+|.+|+-+|..|.+.|      .+|+++++.+++
T Consensus         6 ~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~   46 (470)
T 3i6d_A            6 KHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRV   46 (470)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCC
Confidence            57999999999999999999999      899999987554

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=96.46  E-value=0.0011  Score=67.84  Aligned_cols=59  Identities=14%  Similarity=0.178  Sum_probs=43.0

Q ss_pred             HHHcCcEEEcCCeEEEEEeCCC--CcEEEEEeC--CCc--EE---EcCEEEEeecCccCChhhhhcCC
Q 011351          259 YQQNGVKFVKGASIKNLEAGSD--GRVAAVKLE--DGS--TI---DADTIVIGIGAKPTVSPFERVGL  317 (488)
Q Consensus       259 l~~~GV~v~~~~~v~~i~~~~~--~~v~~v~l~--~g~--~i---~~D~vi~a~G~~p~~~~~~~~gl  317 (488)
                      .++.|+++++++.|+++..+++  +++.+|...  +|+  ++   .++.||+|+|.-.+..++..+|+
T Consensus       204 ~~~~~~~v~~~~~v~~i~~~~~~~~~~~GV~~~~~~g~~~~~~v~a~k~VILaaGa~~sp~lL~~SGi  271 (536)
T 1ju2_A          204 GNSNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGV  271 (536)
T ss_dssp             SCTTTEEEEESCEEEEEEECCSSSCBEEEEEEECTTSCEEEEEEEEEEEEEECCHHHHHHHHHHHTTE
T ss_pred             hcCCCcEEEeCCEEEEEEECCCCCCEEEEEEEEeCCCceEEEEeccCCEEEEcCcccCCHHHHHHcCC
Confidence            4577999999999999986543  478788774  465  34   57899999997654456655554

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=96.40  E-value=0.023  Score=59.52  Aligned_cols=49  Identities=14%  Similarity=0.190  Sum_probs=36.8

Q ss_pred             HHHHc-Cc-EEEcCCeEEEEEeCCC--CcEEEEEe---CCCc--EEEcCEEEEeecCc
Q 011351          258 LYQQN-GV-KFVKGASIKNLEAGSD--GRVAAVKL---EDGS--TIDADTIVIGIGAK  306 (488)
Q Consensus       258 ~l~~~-GV-~v~~~~~v~~i~~~~~--~~v~~v~l---~~g~--~i~~D~vi~a~G~~  306 (488)
                      .+++. || +++.++.++++..+++  +++.+|..   .+|+  .+.++.||+|+|-.
T Consensus       160 ~~~~~~gv~~i~~~~~v~~L~~~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGG~  217 (643)
T 1jnr_A          160 AAKMAVGEENIYERVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKAKAVILATGGA  217 (643)
T ss_dssp             HHHHHHCGGGEECSEEEEEEEECTTCTTBEEEEEEEESSSSCEEEEECSEEEECCCCB
T ss_pred             HHHhcCCCcEEEecCEEEEEEEcCCccceeEEEEEEEecCCcEEEEEcCEEEECCCcc
Confidence            34455 89 9999999999986533  27777653   5665  58999999999964

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=96.25  E-value=0.0023  Score=65.42  Aligned_cols=58  Identities=19%  Similarity=0.367  Sum_probs=42.8

Q ss_pred             HHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCC---cEEEcCEEEEeecCccCChhhhhcCCc
Q 011351          260 QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVSPFERVGLN  318 (488)
Q Consensus       260 ~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g---~~i~~D~vi~a~G~~p~~~~~~~~gl~  318 (488)
                      .+.++.+..++.+.++..+ ++++++|...+.   .++.++.||+|.|.--...+|..+|+.
T Consensus       222 ~r~nl~v~~~~~v~~i~~~-~~~a~gv~~~~~~~~~~~~a~~VILsAGai~SP~LLl~SGig  282 (526)
T 3t37_A          222 GRKNLTILTGSRVRRLKLE-GNQVRSLEVVGRQGSAEVFADQIVLCAGALESPALLMRSGIG  282 (526)
T ss_dssp             TCTTEEEECSCEEEEEEEE-TTEEEEEEEEETTEEEEEEEEEEEECSHHHHHHHHHHHTTEE
T ss_pred             CCCCeEEEeCCEEEEEEec-CCeEEEEEEEecCceEEEeecceEEcccccCCcchhhhccCC
Confidence            3568999999999999864 566666655432   257889999999986655677776653

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=96.23  E-value=0.0025  Score=65.68  Aligned_cols=58  Identities=17%  Similarity=0.225  Sum_probs=41.7

Q ss_pred             HHcCcEEEcCCeEEEEEeCC-CCcEEEEEeC--CCc--EEEc-CEEEEeecCccCChhhhhcCC
Q 011351          260 QQNGVKFVKGASIKNLEAGS-DGRVAAVKLE--DGS--TIDA-DTIVIGIGAKPTVSPFERVGL  317 (488)
Q Consensus       260 ~~~GV~v~~~~~v~~i~~~~-~~~v~~v~l~--~g~--~i~~-D~vi~a~G~~p~~~~~~~~gl  317 (488)
                      ++.|+++++++.++++.-++ ++++++|++.  +|+  ++.+ ..||+|+|.-....+|..+|+
T Consensus       217 ~r~Nl~v~~~a~v~ri~~~~~~~~a~GV~~~~~~g~~~~v~A~keVILsaGa~~sp~lL~~SGI  280 (577)
T 3q9t_A          217 NKPNITIVPEVHSKRLIINEADRTCKGVTVVTAAGNELNFFADREVILSQGVFETPKLLMLSGI  280 (577)
T ss_dssp             SCTTEEEECSEEEEEEEEETTTTEEEEEEEEETTSCEEEEEEEEEEEECSHHHHHHHHHHHTTE
T ss_pred             cCCCeEEEcCcEEEEEEEeCCCCEEEEEEEEeCCCcEEEEEeeeEEEEcccccCChHHHHHcCC
Confidence            45699999999999997643 5677788774  354  4566 569999997655455555554

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=96.10  E-value=0.019  Score=60.17  Aligned_cols=51  Identities=14%  Similarity=0.208  Sum_probs=36.9

Q ss_pred             HHHHHHHc--CcEEEcCCeEEEEEeCCC--CcEEEEEe---CCCc--EEEcCEEEEeecC
Q 011351          255 YEQLYQQN--GVKFVKGASIKNLEAGSD--GRVAAVKL---EDGS--TIDADTIVIGIGA  305 (488)
Q Consensus       255 ~~~~l~~~--GV~v~~~~~v~~i~~~~~--~~v~~v~l---~~g~--~i~~D~vi~a~G~  305 (488)
                      +.+.+++.  ||+++.++.+.++..+++  +++.++..   .+|+  .+.++.||+|||-
T Consensus       172 L~~~a~~~~~gV~i~~~~~v~dLi~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVLATGG  231 (662)
T 3gyx_A          172 VAEAAKNALGQDRIIERIFIVKLLLDKNTPNRIAGAVGFNLRANEVHIFKANAMVVACGG  231 (662)
T ss_dssp             HHHHHHHHHCTTTEECSEEECCCEECSSSTTBEEEEEEEESSSSCEEEEECSEEEECCCC
T ss_pred             HHHHHHhcCCCcEEEEceEEEEEEEeCCccceEEEEEEEEcCCCcEEEEEeCEEEECCCc
Confidence            34445555  899999998888876544  37777754   4554  5899999999994

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=95.98  E-value=0.004  Score=64.13  Aligned_cols=66  Identities=15%  Similarity=0.309  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHcCcEEEcCCeEEEEEeCC---CCcEEEEEeC--CCc--EEEcC-EEEEeecCccCChhhhhcCC
Q 011351          252 AQRYEQLYQQNGVKFVKGASIKNLEAGS---DGRVAAVKLE--DGS--TIDAD-TIVIGIGAKPTVSPFERVGL  317 (488)
Q Consensus       252 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~---~~~v~~v~l~--~g~--~i~~D-~vi~a~G~~p~~~~~~~~gl  317 (488)
                      ..++...+++.+++|++++.|++|.-++   ++++++|++.  +|+  ++.+. -||+|+|.--...+|.-+|+
T Consensus       230 ~ayL~p~~~r~NL~V~t~a~V~rIl~d~~~~~~ra~GV~~~~~~G~~~~v~A~kEVILsAGa~~SPqLL~lSGI  303 (583)
T 3qvp_A          230 REWLLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGI  303 (583)
T ss_dssp             HHHTTTTTTCTTEEEECSCEEEEEEEECSSSSCEEEEEEEESSTTCEEEEEEEEEEEECSCTTTHHHHHHHTTB
T ss_pred             HHHHHHhhcCCCcEEEcCCEEEEEEeccCCCCCEEEEEEEEecCCcEEEEEECCEEEEeCCccCCHHHHHHcCC
Confidence            3344444567899999999999997543   5678888774  564  46776 69999998655455555544

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=95.96  E-value=0.039  Score=55.91  Aligned_cols=61  Identities=16%  Similarity=0.186  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCC------cEEEEEeCCC-----cEEEcCEEEEeecCccCCh
Q 011351          250 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG------RVAAVKLEDG-----STIDADTIVIGIGAKPTVS  310 (488)
Q Consensus       250 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~------~v~~v~l~~g-----~~i~~D~vi~a~G~~p~~~  310 (488)
                      ++.++++...++.+..+.++++|++++..+.+      ....|...++     +++.|+.||+|+|..|...
T Consensus       146 E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~~~ar~vVlatG~~P~iP  217 (501)
T 4b63_A          146 EFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISARRTRKVVIAIGGTAKMP  217 (501)
T ss_dssp             HHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEEEEEEEEEECCCCEECCC
T ss_pred             HHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceEEEEEeCEEEECcCCCCCCC
Confidence            45666666667777789999999999864332      1234555433     3588999999999888754

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=95.95  E-value=0.0054  Score=62.29  Aligned_cols=58  Identities=19%  Similarity=0.275  Sum_probs=43.3

Q ss_pred             HHHc-CcEEEcCCeEEEEEeCCCC-cEEEEEeC--CC-----cEEEcCEEEEeecCccCChhhhhcC
Q 011351          259 YQQN-GVKFVKGASIKNLEAGSDG-RVAAVKLE--DG-----STIDADTIVIGIGAKPTVSPFERVG  316 (488)
Q Consensus       259 l~~~-GV~v~~~~~v~~i~~~~~~-~v~~v~l~--~g-----~~i~~D~vi~a~G~~p~~~~~~~~g  316 (488)
                      .+++ +++|++++.|++|..++++ ++++|...  +|     .++.++.||+|+|.-....+|..+|
T Consensus       231 a~~~~n~~i~~~~~V~~i~~~~~g~~~~gV~~~~~~g~~~~~~~v~A~~VIlaaG~~~s~~lL~~Sg  297 (504)
T 1n4w_A          231 ALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLFLGAGSLGSTELLVRAR  297 (504)
T ss_dssp             HHHTTSEEEEESEEEEEEEECTTSSEEEEEEEECTTCCEEEEEEEEEEEEEECSHHHHHHHHHHHHH
T ss_pred             HHhcCCcEEEeCCEEEEEEECCCCCEEEEEEEeCCCCccceeEEEeeCEEEEccCCCCCHHHHHhcc
Confidence            3445 5999999999999875434 67888774  56     3688999999999865446666555

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=95.84  E-value=0.0066  Score=61.71  Aligned_cols=63  Identities=10%  Similarity=0.133  Sum_probs=44.9

Q ss_pred             HHHHHHHHcCcEEEcCCeEEEEEeCCCC-cEEEEEeC--CC-----cEEEcCEEEEeecCccCChhhhhcC
Q 011351          254 RYEQLYQQNGVKFVKGASIKNLEAGSDG-RVAAVKLE--DG-----STIDADTIVIGIGAKPTVSPFERVG  316 (488)
Q Consensus       254 ~~~~~l~~~GV~v~~~~~v~~i~~~~~~-~v~~v~l~--~g-----~~i~~D~vi~a~G~~p~~~~~~~~g  316 (488)
                      ++....+..++++++++.|++|..++++ ++++|...  +|     .++.++.||+|+|.-....+|..+|
T Consensus       232 ~l~~a~~~~n~~i~~~~~v~~i~~~~~g~~~~gV~~~~~~g~~~~~~~~~A~~VIlaaGa~~sp~lL~~Sg  302 (507)
T 1coy_A          232 YLAQAAATGKLTITTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTADRVFFAAGSVGTSKLLVSMK  302 (507)
T ss_dssp             HHHHHHHTTCEEEECSEEEEEEEECSSSSEEEEEEEECTTSCEEEEEEEEEEEEEECSHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCcEEEeCCEEEEEEECCCCCEEEEEEEeCCCCcccccEEEEeCEEEEccCccCCHHHHHhcc
Confidence            3333334446999999999999876444 67788774  55     3688999999999865446665555

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=95.80  E-value=0.018  Score=57.48  Aligned_cols=40  Identities=15%  Similarity=0.336  Sum_probs=35.6

Q ss_pred             CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011351           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (488)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~   90 (488)
                      ++..+||+|||+|++|+++|..|++.|.   +|+++|+++...
T Consensus        17 ~~~~~dv~iiG~G~~g~~~a~~l~~~g~---~v~~~e~~~~~G   56 (475)
T 3p1w_A           17 QGEHYDVIILGTGLKECILSGLLSHYGK---KILVLDRNPYYG   56 (475)
T ss_dssp             CCCEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSC
T ss_pred             ccccCCEEEECCCHHHHHHHHHHHHCCC---cEEEEeccCCCC
Confidence            3456899999999999999999999987   899999998654

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=95.78  E-value=0.0092  Score=54.51  Aligned_cols=34  Identities=15%  Similarity=0.224  Sum_probs=31.8

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcC
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  242 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~  242 (488)
                      .|+|||+|+.|+-+|..|++.|.+|+|+++.+.+
T Consensus         4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~   37 (336)
T 3kkj_A            4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGS   37 (336)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence            5999999999999999999999999999988765

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=95.75  E-value=0.0099  Score=59.39  Aligned_cols=82  Identities=21%  Similarity=0.125  Sum_probs=60.2

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEE
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  285 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~  285 (488)
                      .+++++|+|.|.+|+-+|..|.++|.+|++.+..+...    +     ...+.|++.||+++.+....++          
T Consensus         8 ~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~----~-----~~~~~L~~~gi~~~~g~~~~~~----------   68 (451)
T 3lk7_A            8 ENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDE----N-----PTAQSLLEEGIKVVCGSHPLEL----------   68 (451)
T ss_dssp             TTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGG----C-----HHHHHHHHTTCEEEESCCCGGG----------
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccC----C-----hHHHHHHhCCCEEEECCChHHh----------
Confidence            57899999999999999999999999999998765211    1     1234678889999877431100          


Q ss_pred             EEeCCCcEEEcCEEEEeecCccCChhh
Q 011351          286 VKLEDGSTIDADTIVIGIGAKPTVSPF  312 (488)
Q Consensus       286 v~l~~g~~i~~D~vi~a~G~~p~~~~~  312 (488)
                        +.+    .+|.||+++|..++.+.+
T Consensus        69 --~~~----~~d~vv~spgi~~~~p~~   89 (451)
T 3lk7_A           69 --LDE----DFCYMIKNPGIPYNNPMV   89 (451)
T ss_dssp             --GGS----CEEEEEECTTSCTTSHHH
T ss_pred             --hcC----CCCEEEECCcCCCCChhH
Confidence              000    179999999998887653

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=95.68  E-value=0.0073  Score=62.50  Aligned_cols=61  Identities=13%  Similarity=0.254  Sum_probs=44.4

Q ss_pred             HHHHHcCcEEEcCCeEEEEEeCCC---CcEEEEEeC--CCc--EEEc-CEEEEeecCccCChhhhhcCC
Q 011351          257 QLYQQNGVKFVKGASIKNLEAGSD---GRVAAVKLE--DGS--TIDA-DTIVIGIGAKPTVSPFERVGL  317 (488)
Q Consensus       257 ~~l~~~GV~v~~~~~v~~i~~~~~---~~v~~v~l~--~g~--~i~~-D~vi~a~G~~p~~~~~~~~gl  317 (488)
                      ...++.|+++++++.|+++..+++   +++.+|...  +|+  ++.+ +.||+|+|.-....+|..+|+
T Consensus       239 ~~~~~~nl~i~~~~~v~~l~~~~~~~~~~~~GV~~~~~~g~~~~v~A~k~VILaaG~~~sp~lL~~SGI  307 (587)
T 1gpe_A          239 PNYQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILEYSGI  307 (587)
T ss_dssp             TTTTCTTEEEEESCEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHHHHTTE
T ss_pred             HhhcCCCcEEEcCCEEEEEEECCCCCCCEEEEEEEEeCCCcEEEEEecccEEEccCCCCCHHHHHhCCC
Confidence            334567999999999999975432   467777764  564  4678 899999998765566666554

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=95.67  E-value=0.0066  Score=62.27  Aligned_cols=64  Identities=22%  Similarity=0.356  Sum_probs=45.6

Q ss_pred             HHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCC---Cc--EEEcC-EEEEeecCccCChhhhhcCC
Q 011351          254 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---GS--TIDAD-TIVIGIGAKPTVSPFERVGL  317 (488)
Q Consensus       254 ~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~---g~--~i~~D-~vi~a~G~~p~~~~~~~~gl  317 (488)
                      ++....++.|+++++++.|+++..++++++.+|.+.+   |+  ++.++ .||+|+|.-....++..+|+
T Consensus       214 ~l~~a~~~~~~~i~~~~~V~~i~~~~~~~~~GV~~~~~~~g~~~~i~A~k~VIlaaG~~~sp~lL~~SGi  283 (546)
T 2jbv_A          214 YIHPIVEQENFTLLTGLRARQLVFDADRRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGI  283 (546)
T ss_dssp             HTGGGTTCTTEEEECSCEEEEEEECTTSBEEEEEEESSTTSCEEEEEEEEEEEECSHHHHHHHHHHHTTE
T ss_pred             HHHHHhcCCCcEEEeCCEEEEEEECCCCeEEEEEEEECCCCcEEEEEeCccEEEecCccCCchhhhhcCC
Confidence            3333334679999999999999865437777887644   53  68898 99999998433356655554

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=95.64  E-value=0.013  Score=48.10  Aligned_cols=37  Identities=11%  Similarity=0.271  Sum_probs=32.5

Q ss_pred             CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      ...+.+|+|+|.|.-|...|..|.+.|+   +|+++|+++
T Consensus         4 ~~~~~~viIiG~G~~G~~la~~L~~~g~---~v~vid~~~   40 (140)
T 3fwz_A            4 VDICNHALLVGYGRVGSLLGEKLLASDI---PLVVIETSR   40 (140)
T ss_dssp             CCCCSCEEEECCSHHHHHHHHHHHHTTC---CEEEEESCH
T ss_pred             ccCCCCEEEECcCHHHHHHHHHHHHCCC---CEEEEECCH
Confidence            3456789999999999999999999987   899999764

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=95.50  E-value=0.0056  Score=62.91  Aligned_cols=67  Identities=15%  Similarity=0.221  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHcCcEEEcCCeEEEEEeC---CC-CcEEEEEeCC--C-c--EEEc-CEEEEeecCccCChhhhhcCC
Q 011351          251 LAQRYEQLYQQNGVKFVKGASIKNLEAG---SD-GRVAAVKLED--G-S--TIDA-DTIVIGIGAKPTVSPFERVGL  317 (488)
Q Consensus       251 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~---~~-~~v~~v~l~~--g-~--~i~~-D~vi~a~G~~p~~~~~~~~gl  317 (488)
                      ...++...+++.+++|++++.|++|.-+   ++ +++++|++.+  | +  ++.+ ..||+|.|.--...+|..+|+
T Consensus       210 ~~ayL~p~~~r~NL~Vlt~a~V~rIl~~~~~~g~~rA~GVe~~~~~g~~~~~v~A~kEVILsAGai~SPqlL~lSGI  286 (566)
T 3fim_B          210 STAYLRPAQSRPNLSVLINAQVTKLVNSGTTNGLPAFRCVEYAEQEGAPTTTVCAKKEVVLSAGSVGTPILLQLSGI  286 (566)
T ss_dssp             HHHTHHHHTTCTTEEEESSCEEEEEECCEEETTEEECCEEEEESSTTSCCEEEEEEEEEEECCHHHHHHHHHHHTTE
T ss_pred             HHHHhhhhccCCCeEEECCCEEEEEEeecCCCCCCEEEEEEEEECCCceEEEEEeeeEEEEecCCcCChHHHHhcCC
Confidence            3345555556789999999999999854   12 5666777643  4 3  4667 789999997544455555554

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=95.42  E-value=0.02  Score=54.50  Aligned_cols=80  Identities=23%  Similarity=0.231  Sum_probs=58.5

Q ss_pred             cCCeEEEECCCHHHHH-HHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEE
Q 011351          206 KAKKVVVVGGGYIGME-VAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA  284 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e-~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~  284 (488)
                      ..+++.|||.|-+|+. +|..|.++|.+|++.+..+.      ++     ..+.|++.|++++.+.....          
T Consensus         3 ~~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~------~~-----~~~~L~~~gi~v~~g~~~~~----------   61 (326)
T 3eag_A            3 AMKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY------PP-----MSTQLEALGIDVYEGFDAAQ----------   61 (326)
T ss_dssp             CCCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC------TT-----HHHHHHHTTCEEEESCCGGG----------
T ss_pred             CCcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC------cH-----HHHHHHhCCCEEECCCCHHH----------
Confidence            3578999999999996 88999999999999987653      11     23457788999886632110          


Q ss_pred             EEEeCCCcEEEcCEEEEeecCccCChhh
Q 011351          285 AVKLEDGSTIDADTIVIGIGAKPTVSPF  312 (488)
Q Consensus       285 ~v~l~~g~~i~~D~vi~a~G~~p~~~~~  312 (488)
                         +..   ..+|.||+++|..|+.+.+
T Consensus        62 ---l~~---~~~d~vV~Spgi~~~~p~~   83 (326)
T 3eag_A           62 ---LDE---FKADVYVIGNVAKRGMDVV   83 (326)
T ss_dssp             ---GGS---CCCSEEEECTTCCTTCHHH
T ss_pred             ---cCC---CCCCEEEECCCcCCCCHHH
Confidence               000   1479999999999887654

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=95.21  E-value=0.019  Score=51.10  Aligned_cols=107  Identities=15%  Similarity=0.231  Sum_probs=66.6

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEE
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  285 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~  285 (488)
                      .+++++|||+|.+|..-+..|.+.|.+|+++.+.       +.++    +.+..++.+++++...    +.         
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~-------~~~~----l~~l~~~~~i~~i~~~----~~---------   85 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT-------VSAE----INEWEAKGQLRVKRKK----VG---------   85 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS-------CCHH----HHHHHHTTSCEEECSC----CC---------
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC-------CCHH----HHHHHHcCCcEEEECC----CC---------
Confidence            5799999999999999999999999999999753       2333    3344455567765331    11         


Q ss_pred             EEeCCCcEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeCC----CCCC-CCCCEEEEceec
Q 011351          286 VKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDG----QFRT-RMPGIFAIGDVA  344 (488)
Q Consensus       286 v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~----~~~t-~~~~Ifa~GD~a  344 (488)
                          .+.--.+|+||.|||.......+...   .. .++.||.    .+.+ ..|-++--||+.
T Consensus        86 ----~~dL~~adLVIaAT~d~~~N~~I~~~---ak-~gi~VNvvD~p~~~~f~~Paiv~rg~l~  141 (223)
T 3dfz_A           86 ----EEDLLNVFFIVVATNDQAVNKFVKQH---IK-NDQLVNMASSFSDGNIQIPAQFSRGRLS  141 (223)
T ss_dssp             ----GGGSSSCSEEEECCCCTHHHHHHHHH---SC-TTCEEEC-----CCSEECCEEEEETTEE
T ss_pred             ----HhHhCCCCEEEECCCCHHHHHHHHHH---Hh-CCCEEEEeCCcccCeEEEeeEEEeCCEE
Confidence                11112489999999976543333222   11 3455542    2222 456666666655

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=95.12  E-value=0.028  Score=46.82  Aligned_cols=34  Identities=15%  Similarity=0.256  Sum_probs=30.6

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~   86 (488)
                      .+.+|+|+|+|..|...+..|.+.|+   +|+++|++
T Consensus         2 ~~~~vlI~G~G~vG~~la~~L~~~g~---~V~vid~~   35 (153)
T 1id1_A            2 RKDHFIVCGHSILAINTILQLNQRGQ---NVTVISNL   35 (153)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTC---CEEEEECC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC---CEEEEECC
Confidence            35689999999999999999999887   89999975

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=95.10  E-value=0.024  Score=47.31  Aligned_cols=36  Identities=22%  Similarity=0.351  Sum_probs=31.7

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      ....+|+|+|+|.-|...|..|.+.|.   +|+++++++
T Consensus        17 ~~~~~v~IiG~G~iG~~la~~L~~~g~---~V~vid~~~   52 (155)
T 2g1u_A           17 QKSKYIVIFGCGRLGSLIANLASSSGH---SVVVVDKNE   52 (155)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESCG
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCC---eEEEEECCH
Confidence            345789999999999999999999886   899999764

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=95.03  E-value=0.016  Score=58.59  Aligned_cols=36  Identities=17%  Similarity=0.256  Sum_probs=31.0

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL  243 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l  243 (488)
                      |+|+|||+|..|+-+|..|++.|.+|+++++++++-
T Consensus         2 k~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~G   37 (501)
T 4dgk_A            2 KPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKPG   37 (501)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEECCC----
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCCC
Confidence            689999999999999999999999999999987653

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=94.98  E-value=0.022  Score=46.62  Aligned_cols=34  Identities=21%  Similarity=0.364  Sum_probs=30.6

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      +++|+|+|+|.-|...|..|.+.|+   +|+++|+++
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~---~V~~id~~~   39 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGK---KVLAVDKSK   39 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC---CEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC---eEEEEECCH
Confidence            4689999999999999999999987   899999753

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=94.44  E-value=0.036  Score=43.45  Aligned_cols=33  Identities=12%  Similarity=0.286  Sum_probs=29.4

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcC-CCCCcEEEEcCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHG-MADGRLCIVSKE   86 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g-~~~~~V~lie~~   86 (488)
                      +++|+|+|+|..|...+..|.+.| +   +|++++++
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~---~v~~~~r~   38 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNY---SVTVADHD   38 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSE---EEEEEESC
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCc---eEEEEeCC
Confidence            468999999999999999999987 5   79998865

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=94.26  E-value=0.048  Score=44.22  Aligned_cols=32  Identities=19%  Similarity=0.344  Sum_probs=29.1

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~   86 (488)
                      ++|+|||+|.-|...|..|.+.|+   +|+++|++
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~---~v~~~d~~   36 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGH---DIVLIDID   36 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC---EEEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC---eEEEEECC
Confidence            589999999999999999999886   89999865

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=93.90  E-value=0.059  Score=47.87  Aligned_cols=36  Identities=25%  Similarity=0.521  Sum_probs=32.2

Q ss_pred             CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (488)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~   86 (488)
                      ....++|+|||||..|...+..|.+.|.   +|+||+++
T Consensus        28 ~L~gk~VLVVGgG~va~~ka~~Ll~~GA---~VtVvap~   63 (223)
T 3dfz_A           28 DLKGRSVLVVGGGTIATRRIKGFLQEGA---AITVVAPT   63 (223)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHGGGCC---CEEEECSS
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCCC---EEEEECCC
Confidence            3567899999999999999999999976   89999975

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=93.88  E-value=0.26  Score=46.46  Aligned_cols=85  Identities=13%  Similarity=0.157  Sum_probs=55.4

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEc--CCeEEEEEeCCCCcEEE
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVK--GASIKNLEAGSDGRVAA  285 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~--~~~v~~i~~~~~~~v~~  285 (488)
                      .++.|+|+|..|.-+|..|.+.|.+|+++.|.+          .     +.+++.|+.+..  .... .+.+     + .
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~----------~-----~~i~~~Gl~~~~~~~g~~-~~~~-----~-~   60 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD----------Y-----ETVKAKGIRIRSATLGDY-TFRP-----A-A   60 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT----------H-----HHHHHHCEEEEETTTCCE-EECC-----S-C
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh----------H-----HHHHhCCcEEeecCCCcE-EEee-----e-e
Confidence            479999999999999999999999999987753          0     335666776653  1111 1100     0 1


Q ss_pred             EEeCCC-cEE-EcCEEEEeecCccCChhhhhc
Q 011351          286 VKLEDG-STI-DADTIVIGIGAKPTVSPFERV  315 (488)
Q Consensus       286 v~l~~g-~~i-~~D~vi~a~G~~p~~~~~~~~  315 (488)
                      +. .+- +.. .+|+||+|+-.....+.++..
T Consensus        61 ~~-~~~~~~~~~~DlVilavK~~~~~~~l~~l   91 (320)
T 3i83_A           61 VV-RSAAELETKPDCTLLCIKVVEGADRVGLL   91 (320)
T ss_dssp             EE-SCGGGCSSCCSEEEECCCCCTTCCHHHHH
T ss_pred             eE-CCHHHcCCCCCEEEEecCCCChHHHHHHH
Confidence            11 222 222 689999998877665655554

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=93.62  E-value=0.072  Score=55.14  Aligned_cols=61  Identities=16%  Similarity=0.129  Sum_probs=51.6

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCC-CcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD-GRVAAVKLEDGSTIDADTIVIGIGAKPT  308 (488)
Q Consensus       248 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~-~~v~~v~l~~g~~i~~D~vi~a~G~~p~  308 (488)
                      ...+.+.+.+.++..|.++++++.|.+|..+++ +++.+|.+.+|+++.||.||......|.
T Consensus       377 ~g~L~qaL~r~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~~VVs~~~~lp~  438 (650)
T 1vg0_A          377 QGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSE  438 (650)
T ss_dssp             TTHHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGGGBCT
T ss_pred             hhHHHHHHHHHHHHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCCEEEcCEEEEChhhcCH
Confidence            447888888899999999999999999976543 7788888888999999999998776664

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=93.54  E-value=0.091  Score=53.02  Aligned_cols=39  Identities=26%  Similarity=0.339  Sum_probs=34.8

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ  244 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~  244 (488)
                      ..++|+|||+|.+|+.+|..|.+.|.+|+++++.+++..
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg   70 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGG   70 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCC
Confidence            357899999999999999999999999999998876554

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=93.38  E-value=0.08  Score=52.11  Aligned_cols=35  Identities=20%  Similarity=0.227  Sum_probs=32.1

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcC
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  242 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~  242 (488)
                      ++|+|||+|..|+-+|..|++.|.+|+++++.+++
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~   35 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMI   35 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            36999999999999999999999999999988654

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=93.27  E-value=0.083  Score=45.30  Aligned_cols=36  Identities=14%  Similarity=0.091  Sum_probs=31.3

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHc-CCCCCcEEEEcCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKEA   87 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~-g~~~~~V~lie~~~   87 (488)
                      ....+|+|+|.|.-|...|..|.+. |+   +|+++|+++
T Consensus        37 ~~~~~v~IiG~G~~G~~~a~~L~~~~g~---~V~vid~~~   73 (183)
T 3c85_A           37 PGHAQVLILGMGRIGTGAYDELRARYGK---ISLGIEIRE   73 (183)
T ss_dssp             CTTCSEEEECCSHHHHHHHHHHHHHHCS---CEEEEESCH
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhccCC---eEEEEECCH
Confidence            3356899999999999999999998 87   799999763

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=93.19  E-value=0.083  Score=42.94  Aligned_cols=34  Identities=21%  Similarity=0.417  Sum_probs=30.0

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      +++|+|+|+|..|...+..|.+.|.   +|+++++++
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g~---~v~~~d~~~   39 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMGH---EVLAVDINE   39 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC---CCEEEESCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            4679999999999999999999886   799998653

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=92.89  E-value=0.064  Score=50.86  Aligned_cols=65  Identities=17%  Similarity=0.185  Sum_probs=44.7

Q ss_pred             CCeEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCcCcccc------cC-HHHHHHHHHHHHHcCcEEEcCCe
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVG--WKLDTTIIFPENHLLQRL------FT-PSLAQRYEQLYQQNGVKFVKGAS  271 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~--~g~~v~lv~~~~~~l~~~------~~-~~~~~~~~~~l~~~GV~v~~~~~  271 (488)
                      ...|+|||+|+.|+-.|..|++  .|.+|+++++.+.+-...      ++ ..+...+.+.+++.|+++..+..
T Consensus        65 ~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~~~~~~~~~~~~l~~~~~~~~~e~Gv~~~~~~~  138 (326)
T 3fpz_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGD  138 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCSTTCCCEEEETTTHHHHHHTTCCCEECSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceEEeCCccCCHHHHHHHHHHHHHHcCCEEEECCc
Confidence            3569999999999999999974  599999999876432211      00 11122344567788888876643

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=92.89  E-value=0.12  Score=48.44  Aligned_cols=39  Identities=15%  Similarity=0.239  Sum_probs=32.0

Q ss_pred             ccCCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           46 SFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        46 ~~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      +|.+.+++|.|||+|.-|...|..|++.|+   +|+++|.++
T Consensus        10 ~~~~~~~~I~VIG~G~mG~~iA~~la~~G~---~V~~~d~~~   48 (302)
T 1f0y_A           10 AKKIIVKHVTVIGGGLMGAGIAQVAAATGH---TVVLVDQTE   48 (302)
T ss_dssp             --CCCCCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSCH
T ss_pred             cccccCCEEEEECCCHHHHHHHHHHHhCCC---eEEEEECCH
Confidence            333445789999999999999999999987   899999764

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=92.75  E-value=0.094  Score=51.86  Aligned_cols=33  Identities=21%  Similarity=0.375  Sum_probs=31.3

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  240 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~  240 (488)
                      ++|+|||+|+.|+-+|..|++.|.+|+++++.+
T Consensus        23 ~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           23 KRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            679999999999999999999999999999875

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=92.71  E-value=0.12  Score=52.12  Aligned_cols=78  Identities=15%  Similarity=0.154  Sum_probs=57.0

Q ss_pred             hcCCeEEEECCCHHHHH-HHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcE
Q 011351          205 EKAKKVVVVGGGYIGME-VAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV  283 (488)
Q Consensus       205 ~~~~~vvVvG~G~~g~e-~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v  283 (488)
                      ...+++.|||-|-+|+- +|..|.++|.+|+..+....       +     ..+.|++.|++++.+.....         
T Consensus        20 ~~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~-------~-----~~~~l~~~gi~~~~g~~~~~---------   78 (494)
T 4hv4_A           20 RRVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPN-------S-----VTQHLTALGAQIYFHHRPEN---------   78 (494)
T ss_dssp             --CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCC-------H-----HHHHHHHTTCEEESSCCGGG---------
T ss_pred             ccCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCC-------H-----HHHHHHHCCCEEECCCCHHH---------
Confidence            35689999999999996 79999999999999875431       1     22457888999987632100         


Q ss_pred             EEEEeCCCcEEEcCEEEEeecCccCChhh
Q 011351          284 AAVKLEDGSTIDADTIVIGIGAKPTVSPF  312 (488)
Q Consensus       284 ~~v~l~~g~~i~~D~vi~a~G~~p~~~~~  312 (488)
                          +     ..+|.||+++|..++.+.+
T Consensus        79 ----~-----~~~d~vV~Spgi~~~~p~~   98 (494)
T 4hv4_A           79 ----V-----LDASVVVVSTAISADNPEI   98 (494)
T ss_dssp             ----G-----TTCSEEEECTTSCTTCHHH
T ss_pred             ----c-----CCCCEEEECCCCCCCCHHH
Confidence                1     1379999999998876543

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=92.68  E-value=0.085  Score=52.35  Aligned_cols=129  Identities=15%  Similarity=0.165  Sum_probs=74.5

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (488)
                      .++|+|||.|.+|+++|..|.++|+   +|++.|.....+..                                   ..+
T Consensus         5 ~~~v~viG~G~~G~~~a~~l~~~G~---~v~~~D~~~~~~~~-----------------------------------~~l   46 (439)
T 2x5o_A            5 GKNVVIIGLGLTGLSCVDFFLARGV---TPRVMDTRMTPPGL-----------------------------------DKL   46 (439)
T ss_dssp             TCCEEEECCHHHHHHHHHHHHTTTC---CCEEEESSSSCTTG-----------------------------------GGS
T ss_pred             CCEEEEEeecHHHHHHHHHHHhCCC---EEEEEECCCCcchh-----------------------------------HHh
Confidence            4689999999999999999999988   89999976542100                                   112


Q ss_pred             HHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeE
Q 011351          131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKV  210 (488)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~v  210 (488)
                      + .|+++..+...    .+.  +  .     .+|.+|+++|..+. .|.+......++..+..   .+.+... ...+.|
T Consensus        47 ~-~G~~~~~g~~~----~~~--~--~-----~~d~vV~s~gi~~~-~p~~~~a~~~~~~v~~~---~~~~~~~-~~~~vI  107 (439)
T 2x5o_A           47 P-EAVERHTGSLN----DEW--L--M-----AADLIVASPGIALA-HPSLSAAADAGIEIVGD---IELFCRE-AQAPIV  107 (439)
T ss_dssp             C-TTSCEEESSCC----HHH--H--H-----TCSEEEECTTSCTT-CHHHHHHHHTTCEEECH---HHHHHHH-CCSCEE
T ss_pred             h-CCCEEEECCCc----HHH--h--c-----cCCEEEeCCCCCCC-CHHHHHHHHCCCcEEEH---HHHHHHh-cCCCEE
Confidence            3 46666654311    000  0  0     36889999986543 23221111133344432   2222222 235667


Q ss_pred             EEECC---CHHHHHHHHHHHhCCCcEEEE
Q 011351          211 VVVGG---GYIGMEVAAAAVGWKLDTTII  236 (488)
Q Consensus       211 vVvG~---G~~g~e~A~~l~~~g~~v~lv  236 (488)
                      .|-|+   +-+..-++..|...|.++.+.
T Consensus       108 ~VTGTnGKTTT~~ml~~iL~~~g~~~~~~  136 (439)
T 2x5o_A          108 AITGSNGKSTVTTLVGEMAKAAGVNVGVG  136 (439)
T ss_dssp             EEECSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             EEECCCCHHHHHHHHHHHHHhcCCCEEEe
Confidence            77765   334455666677778776544

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=92.64  E-value=0.12  Score=49.47  Aligned_cols=34  Identities=18%  Similarity=0.319  Sum_probs=31.4

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  241 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~  241 (488)
                      ..|+|||+|..|+-+|..|++.|.+|+++++.+.
T Consensus         5 ~dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~~~~   38 (369)
T 3dme_A            5 IDCIVIGAGVVGLAIARALAAGGHEVLVAEAAEG   38 (369)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            4699999999999999999999999999998853

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=92.60  E-value=0.048  Score=54.15  Aligned_cols=78  Identities=18%  Similarity=0.180  Sum_probs=56.1

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEE
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  285 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~  285 (488)
                      .+++++|||.|.+|+..|..|.++|.+|+..+..+.....           ..|+ .|+++..+...   . .      .
T Consensus         4 ~~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~-----------~~l~-~G~~~~~g~~~---~-~------~   61 (439)
T 2x5o_A            4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGL-----------DKLP-EAVERHTGSLN---D-E------W   61 (439)
T ss_dssp             TTCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTTG-----------GGSC-TTSCEEESSCC---H-H------H
T ss_pred             CCCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcchh-----------HHhh-CCCEEEECCCc---H-H------H
Confidence            4688999999999999999999999999998876532210           2345 68888766421   0 0      0


Q ss_pred             EEeCCCcEEEcCEEEEeecCccCChhh
Q 011351          286 VKLEDGSTIDADTIVIGIGAKPTVSPF  312 (488)
Q Consensus       286 v~l~~g~~i~~D~vi~a~G~~p~~~~~  312 (488)
                        +.     .+|.||+++|..|+.+.+
T Consensus        62 --~~-----~~d~vV~s~gi~~~~p~~   81 (439)
T 2x5o_A           62 --LM-----AADLIVASPGIALAHPSL   81 (439)
T ss_dssp             --HH-----TCSEEEECTTSCTTCHHH
T ss_pred             --hc-----cCCEEEeCCCCCCCCHHH
Confidence              01     378999999988765543

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=92.57  E-value=0.11  Score=51.69  Aligned_cols=133  Identities=13%  Similarity=0.178  Sum_probs=77.4

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      +.++|+|||.|.+|+++|..|+++|+   +|++.|..+..   .                              ....+.
T Consensus         8 ~~k~v~viG~G~sG~s~A~~l~~~G~---~V~~~D~~~~~---~------------------------------~~~~~~   51 (451)
T 3lk7_A            8 ENKKVLVLGLARSGEAAARLLAKLGA---IVTVNDGKPFD---E------------------------------NPTAQS   51 (451)
T ss_dssp             TTCEEEEECCTTTHHHHHHHHHHTTC---EEEEEESSCGG---G------------------------------CHHHHH
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCC---EEEEEeCCccc---C------------------------------ChHHHH
Confidence            46899999999999999999999998   89999976420   0                              012345


Q ss_pred             HHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCe
Q 011351          130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKK  209 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~  209 (488)
                      +++.|+++..+..     +++.   + ++   .+|.+|+++|..+. .|........++..+..   .+-+.. +...+.
T Consensus        52 L~~~gi~~~~g~~-----~~~~---~-~~---~~d~vv~spgi~~~-~p~~~~a~~~gi~v~~~---~e~~~~-~~~~~~  114 (451)
T 3lk7_A           52 LLEEGIKVVCGSH-----PLEL---L-DE---DFCYMIKNPGIPYN-NPMVKKALEKQIPVLTE---VELAYL-VSESQL  114 (451)
T ss_dssp             HHHTTCEEEESCC-----CGGG---G-GS---CEEEEEECTTSCTT-SHHHHHHHHTTCCEECH---HHHHHH-HCCSEE
T ss_pred             HHhCCCEEEECCC-----hHHh---h-cC---CCCEEEECCcCCCC-ChhHHHHHHCCCcEEeH---HHHHHH-hcCCCE
Confidence            6778999887643     1110   0 00   27999999997543 22211111123333332   222222 233455


Q ss_pred             EEEECC-CH--HHHHHHHHHHhCCCcEEE
Q 011351          210 VVVVGG-GY--IGMEVAAAAVGWKLDTTI  235 (488)
Q Consensus       210 vvVvG~-G~--~g~e~A~~l~~~g~~v~l  235 (488)
                      |.|-|+ |-  +..-++..|...|.++.+
T Consensus       115 IaVTGTnGKTTTt~ml~~iL~~~g~~~~~  143 (451)
T 3lk7_A          115 IGITGSNGKTTTTTMIAEVLNAGGQRGLL  143 (451)
T ss_dssp             EEEECSSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred             EEEECCCCHHHHHHHHHHHHHhcCCCEEE
Confidence            666664 22  334455667777776643

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=92.56  E-value=0.12  Score=50.97  Aligned_cols=34  Identities=24%  Similarity=0.415  Sum_probs=31.4

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcC
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  242 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~  242 (488)
                      .|+|||+|..|+-+|..|++.|.+|+++++++++
T Consensus         3 dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~   36 (431)
T 3k7m_X            3 DAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERL   36 (431)
T ss_dssp             EEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence            5899999999999999999999999999987654

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=92.54  E-value=0.066  Score=49.15  Aligned_cols=36  Identities=19%  Similarity=0.443  Sum_probs=32.3

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      .+.++|+|||||-.|...+..|.+.|.   +|+||+++.
T Consensus        11 l~~k~VLVVGgG~va~rka~~Ll~~Ga---~VtViap~~   46 (274)
T 1kyq_A           11 LKDKRILLIGGGEVGLTRLYKLMPTGC---KLTLVSPDL   46 (274)
T ss_dssp             CTTCEEEEEEESHHHHHHHHHHGGGTC---EEEEEEEEE
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHhCCC---EEEEEcCCC
Confidence            456899999999999999999999987   899999764

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=92.50  E-value=0.32  Score=39.52  Aligned_cols=77  Identities=14%  Similarity=0.192  Sum_probs=50.9

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEE
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV  286 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v  286 (488)
                      .++++|+|.|..|..+|..|.+.|.+|+++++.+         +.   + +.+++.|+.++.+..      . +.   . 
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~---------~~---~-~~~~~~g~~~i~gd~------~-~~---~-   62 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSR---------TR---V-DELRERGVRAVLGNA------A-NE---E-   62 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCH---------HH---H-HHHHHTTCEEEESCT------T-SH---H-
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCH---------HH---H-HHHHHcCCCEEECCC------C-CH---H-
Confidence            4689999999999999999999999999998753         21   1 234556777664310      0 00   0 


Q ss_pred             EeCCCcEEEcCEEEEeecCcc
Q 011351          287 KLEDGSTIDADTIVIGIGAKP  307 (488)
Q Consensus       287 ~l~~g~~i~~D~vi~a~G~~p  307 (488)
                      .+..-..-.+|.||++++...
T Consensus        63 ~l~~a~i~~ad~vi~~~~~~~   83 (140)
T 3fwz_A           63 IMQLAHLECAKWLILTIPNGY   83 (140)
T ss_dssp             HHHHTTGGGCSEEEECCSCHH
T ss_pred             HHHhcCcccCCEEEEECCChH
Confidence            011001136899999988654

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=92.48  E-value=0.12  Score=51.81  Aligned_cols=35  Identities=23%  Similarity=0.377  Sum_probs=32.1

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCC--cEEEEecCCcC
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHL  242 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~--~v~lv~~~~~~  242 (488)
                      ++|+|||+|.+|+-+|..|++.|.  +|+++++++++
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~   39 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERL   39 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSS
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCC
Confidence            579999999999999999999999  99999987654

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=92.39  E-value=0.14  Score=50.31  Aligned_cols=61  Identities=18%  Similarity=0.250  Sum_probs=45.1

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCC-CcEEEEecCCcCcccc----------------cCHHHHHHHHHHHHHcCcEEE
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHLLQRL----------------FTPSLAQRYEQLYQQNGVKFV  267 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g-~~v~lv~~~~~~l~~~----------------~~~~~~~~~~~~l~~~GV~v~  267 (488)
                      ...+|+|||+|..|+-+|..|++.| .+|+++++.+++-.+.                +.+ ....+.+.+++.|+++.
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG~~~t~~~~G~~~d~G~~~~~~-~~~~~~~l~~~~g~~~~   82 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHSPNYHGRRYEMGAIMGVP-SYDTIQEIMDRTGDKVD   82 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSSTTCCCCEETTEECCSSCCCBCT-TCHHHHHHHHHHCCCCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCCcccccCCCCcccccCceeecC-CcHHHHHHHHHhCCccc
Confidence            3468999999999999999999999 8999999887653211                111 12346677788887653

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=92.33  E-value=0.15  Score=49.27  Aligned_cols=37  Identities=24%  Similarity=0.402  Sum_probs=33.2

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecC-CcC
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE-NHL  242 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~-~~~  242 (488)
                      ...+|+|||+|..|+-+|..|.+.|.+|+++++. +++
T Consensus        43 ~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~v   80 (376)
T 2e1m_A           43 PPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRV   80 (376)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCC
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCcEEEEecccccc
Confidence            3568999999999999999999999999999988 543

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=92.29  E-value=0.15  Score=49.12  Aligned_cols=36  Identities=28%  Similarity=0.315  Sum_probs=32.6

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   89 (488)
                      |++|+|||||..|..+++.+++.|+   +++++|.++..
T Consensus         1 MK~I~ilGgg~~g~~~~~~Ak~~G~---~vv~vd~~~~~   36 (363)
T 4ffl_A            1 MKTICLVGGKLQGFEAAYLSKKAGM---KVVLVDKNPQA   36 (363)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESCTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCCCC
Confidence            5799999999999999999999998   89999987654

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=92.25  E-value=0.27  Score=49.37  Aligned_cols=37  Identities=16%  Similarity=0.345  Sum_probs=33.4

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~   90 (488)
                      .+||+|||||++||+||..|++.|+   +|+|+|+++...
T Consensus        39 ~~~v~iiGaG~aGl~aA~~l~~~g~---~v~v~E~~~~~G   75 (495)
T 2vvm_A           39 PWDVIVIGGGYCGLTATRDLTVAGF---KTLLLEARDRIG   75 (495)
T ss_dssp             CEEEEEECCBHHHHHHHHHHHHTTC---CEEEECSSSBSB
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCC---CEEEEeCCCCCC
Confidence            3799999999999999999999987   899999987653

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=92.23  E-value=0.16  Score=49.03  Aligned_cols=33  Identities=24%  Similarity=0.292  Sum_probs=30.5

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  240 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~  240 (488)
                      +.|+|||+|..|++.|..+++.|.+|+++++.+
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~   34 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRP   34 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccC
Confidence            469999999999999999999999999999764

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=92.07  E-value=0.12  Score=45.86  Aligned_cols=32  Identities=28%  Similarity=0.580  Sum_probs=29.2

Q ss_pred             eEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      +|+|+|+|.-|...|..|.+.|+   +|+++|+++
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~---~v~vid~~~   33 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKY---GVVIINKDR   33 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTC---CEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC---eEEEEECCH
Confidence            69999999999999999999887   899999663

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=92.02  E-value=0.26  Score=49.00  Aligned_cols=39  Identities=10%  Similarity=0.222  Sum_probs=35.1

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~   90 (488)
                      +..+||||||||++|++||..|++.|+   +|+|+|+++...
T Consensus         9 ~~~~dvvVIGaG~~GL~aA~~La~~G~---~V~vlE~~~~~G   47 (453)
T 2bcg_G            9 DTDYDVIVLGTGITECILSGLLSVDGK---KVLHIDKQDHYG   47 (453)
T ss_dssp             CCBCSEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSC
T ss_pred             cccCCEEEECcCHHHHHHHHHHHHCCC---eEEEEeCCCCCC
Confidence            345899999999999999999999988   899999998754

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=91.99  E-value=0.16  Score=51.54  Aligned_cols=36  Identities=22%  Similarity=0.422  Sum_probs=32.2

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhCC-CcEEEEecCCcC
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHL  242 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g-~~v~lv~~~~~~  242 (488)
                      ..+|+|||+|..|+-+|..|.+.| .+|++++.++++
T Consensus         8 ~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~ri   44 (516)
T 1rsg_A            8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRV   44 (516)
T ss_dssp             EEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCC
Confidence            357999999999999999999999 999999987643

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=91.96  E-value=0.46  Score=49.16  Aligned_cols=39  Identities=18%  Similarity=0.321  Sum_probs=35.4

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~   90 (488)
                      ++++||+|||+|..|...|..|++.|.   +|.+||++++..
T Consensus         6 ~~~~D~~i~GtGl~~~~~a~~~~~~g~---~vl~id~~~~~g   44 (650)
T 1vg0_A            6 PSDFDVIVIGTGLPESIIAAACSRSGQ---RVLHVDSRSYYG   44 (650)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSC
T ss_pred             CCcCCEEEECCcHHHHHHHHHHHhCCC---EEEEEcCCCccc
Confidence            346999999999999999999999987   899999999764

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=91.91  E-value=0.15  Score=49.97  Aligned_cols=33  Identities=21%  Similarity=0.273  Sum_probs=31.0

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  240 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~  240 (488)
                      ..|+|||+|+.|+-+|..|++.|.+|+++++.+
T Consensus         6 ~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~   38 (421)
T 3nix_A            6 VDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQK   38 (421)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            479999999999999999999999999999875

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=91.78  E-value=0.16  Score=49.05  Aligned_cols=33  Identities=24%  Similarity=0.341  Sum_probs=30.6

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  241 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~  241 (488)
                      .|+|||+|..|+-+|..|++.|.+|+++++.+.
T Consensus         5 dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~~   37 (389)
T 2gf3_A            5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDP   37 (389)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSCS
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            699999999999999999999999999998753

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=91.71  E-value=0.19  Score=50.53  Aligned_cols=38  Identities=24%  Similarity=0.227  Sum_probs=33.8

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL  243 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l  243 (488)
                      ...+|+|||+|..|+-+|..|.+.|.+|+++++.+++-
T Consensus        10 ~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~G   47 (489)
T 2jae_A           10 GSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPG   47 (489)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCC
Confidence            45689999999999999999999999999999886543

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=91.67  E-value=0.44  Score=44.84  Aligned_cols=87  Identities=17%  Similarity=0.221  Sum_probs=51.9

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEE
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  285 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~  285 (488)
                      ...+|.|||+|..|.-+|..|.+.|.+|+++ +++         +.    .+.+++.|+.+.... . .+...    + .
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~---------~~----~~~i~~~g~~~~~~~-~-~~~~~----~-~   76 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARP---------QH----VQAIEATGLRLETQS-F-DEQVK----V-S   76 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCH---------HH----HHHHHHHCEEEECSS-C-EEEEC----C-E
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcH---------hH----HHHHHhCCeEEEcCC-C-cEEEe----e-e
Confidence            4678999999999999999999999999988 432         11    133455677665321 1 11100    0 1


Q ss_pred             EEeCCCcE-EEcCEEEEeecCccCChhhhh
Q 011351          286 VKLEDGST-IDADTIVIGIGAKPTVSPFER  314 (488)
Q Consensus       286 v~l~~g~~-i~~D~vi~a~G~~p~~~~~~~  314 (488)
                      + ..+-+. -.+|+||+|+......+.++.
T Consensus        77 ~-~~~~~~~~~~D~vilavk~~~~~~~l~~  105 (318)
T 3hwr_A           77 A-SSDPSAVQGADLVLFCVKSTDTQSAALA  105 (318)
T ss_dssp             E-ESCGGGGTTCSEEEECCCGGGHHHHHHH
T ss_pred             e-eCCHHHcCCCCEEEEEcccccHHHHHHH
Confidence            1 122111 258999999876543333443

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=91.63  E-value=0.18  Score=51.13  Aligned_cols=61  Identities=28%  Similarity=0.366  Sum_probs=46.1

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccc-----------------cCHHHHHHHHHHHHHcCcEEEc
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-----------------FTPSLAQRYEQLYQQNGVKFVK  268 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~-----------------~~~~~~~~~~~~l~~~GV~v~~  268 (488)
                      ..+|+|||+|..|+-+|..|++.|.+|+++++++++-.+.                 +... ...+.+.+++.|++...
T Consensus         4 ~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~~-~~~~~~l~~~lgl~~~~   81 (520)
T 1s3e_A            4 KCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPT-QNRILRLAKELGLETYK   81 (520)
T ss_dssp             BCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEECCTTTSCEESSCCEECTT-CHHHHHHHHHTTCCEEE
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCceeecccCCCcccccCceEecCC-cHHHHHHHHHcCCccee
Confidence            3579999999999999999999999999999987663321                 1111 34566778888987653

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=91.56  E-value=0.19  Score=50.27  Aligned_cols=38  Identities=29%  Similarity=0.407  Sum_probs=32.4

Q ss_pred             hcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcC
Q 011351          205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  242 (488)
Q Consensus       205 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~  242 (488)
                      ....+|+|||+|..|+-+|..|++.|.+|+++++.+++
T Consensus        14 ~~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~   51 (478)
T 2ivd_A           14 TTGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARL   51 (478)
T ss_dssp             ---CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSS
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCC
Confidence            34578999999999999999999999999999988654

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=91.47  E-value=0.19  Score=48.26  Aligned_cols=37  Identities=24%  Similarity=0.418  Sum_probs=32.5

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      ....+|||+|+|.||+.+|..|...|.+  +|+++|++.
T Consensus       186 l~d~kVVi~GAGaAG~~iA~ll~~~Ga~--~I~v~D~~G  222 (398)
T 2a9f_A          186 LDEVSIVVNGGGSAGLSITRKLLAAGAT--KVTVVDKFG  222 (398)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCC--EEEEEETTE
T ss_pred             CCccEEEEECCCHHHHHHHHHHHHcCCC--eEEEEECCC
Confidence            3457999999999999999999999863  899999874

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=91.45  E-value=0.23  Score=47.05  Aligned_cols=37  Identities=11%  Similarity=0.225  Sum_probs=30.9

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      .++.+|+|||+|..|.+.|..|++.|+-  +|+|+|.++
T Consensus         7 ~~~~kI~VIGaG~vG~~lA~~la~~g~~--~V~L~D~~~   43 (331)
T 1pzg_A            7 QRRKKVAMIGSGMIGGTMGYLCALRELA--DVVLYDVVK   43 (331)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHHTCC--EEEEECSSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCC--eEEEEECCh
Confidence            3446999999999999999999998752  599999763

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=91.45  E-value=0.19  Score=48.18  Aligned_cols=33  Identities=30%  Similarity=0.435  Sum_probs=30.5

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  239 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~  239 (488)
                      ...|+|||+|.+|+-+|..|++.|.+|+++++.
T Consensus         6 ~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~   38 (363)
T 1c0p_A            6 QKRVVVLGSGVIGLSSALILARKGYSVHILARD   38 (363)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCEEEEEecc
Confidence            357999999999999999999999999999975

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=91.39  E-value=0.28  Score=40.63  Aligned_cols=37  Identities=22%  Similarity=0.291  Sum_probs=33.1

Q ss_pred             hcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Q 011351          205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  241 (488)
Q Consensus       205 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~  241 (488)
                      ..+++++|+|+|.+|..++..|.+.|.+|+++.+.+.
T Consensus        17 ~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~   53 (155)
T 2g1u_A           17 QKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEY   53 (155)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            4678999999999999999999999999999987653

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=91.38  E-value=0.2  Score=48.06  Aligned_cols=36  Identities=19%  Similarity=0.302  Sum_probs=32.2

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~   86 (488)
                      ....+|||+|+|.+|..+|..|...|.+  +|+++|+.
T Consensus       190 l~~~kVVv~GAGaAG~~iAkll~~~G~~--~I~v~Dr~  225 (388)
T 1vl6_A          190 IEEVKVVVNGIGAAGYNIVKFLLDLGVK--NVVAVDRK  225 (388)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHHTCC--EEEEEETT
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHhCCCC--eEEEEECC
Confidence            3568999999999999999999999863  89999987

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=91.36  E-value=0.17  Score=48.81  Aligned_cols=36  Identities=14%  Similarity=0.110  Sum_probs=31.8

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcC
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  242 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~  242 (488)
                      ..+.|+|||+|.+|+-+|..|+ .|.+|+++++.+.+
T Consensus         8 ~~~dv~IIGaGi~Gls~A~~La-~G~~V~vlE~~~~~   43 (381)
T 3nyc_A            8 IEADYLVIGAGIAGASTGYWLS-AHGRVVVLEREAQP   43 (381)
T ss_dssp             EECSEEEECCSHHHHHHHHHHT-TTSCEEEECSSSST
T ss_pred             CcCCEEEECCcHHHHHHHHHHh-CCCCEEEEECCCCc
Confidence            3478999999999999999999 69999999988644

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=91.29  E-value=0.2  Score=49.60  Aligned_cols=39  Identities=13%  Similarity=0.317  Sum_probs=34.6

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~   90 (488)
                      ++++||+|||+|++|+++|..|++.|.   +|+++|+++...
T Consensus         4 ~~~~~v~iiG~G~~gl~~a~~l~~~g~---~v~~~e~~~~~g   42 (433)
T 1d5t_A            4 DEEYDVIVLGTGLTECILSGIMSVNGK---KVLHMDRNPYYG   42 (433)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSC
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCC---cEEEEecCCCcc
Confidence            346899999999999999999999987   899999987654

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=91.28  E-value=0.22  Score=46.98  Aligned_cols=37  Identities=19%  Similarity=0.232  Sum_probs=31.0

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      ++.+|+|||+|..|.+.|..|...+. -.+|+++|.+.
T Consensus         6 ~~~KI~IiGaG~vG~~~a~~l~~~~~-~~ev~L~Di~~   42 (318)
T 1y6j_A            6 SRSKVAIIGAGFVGASAAFTMALRQT-ANELVLIDVFK   42 (318)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTTC-SSEEEEECCC-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-CCEEEEEeCCh
Confidence            35689999999999999999999876 45899999763

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=91.24  E-value=0.54  Score=38.00  Aligned_cols=33  Identities=9%  Similarity=0.083  Sum_probs=30.3

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  239 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~  239 (488)
                      .++++|+|+|.+|..++..|.+.|.+|+++++.
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~   38 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKS   38 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECC
Confidence            468999999999999999999999999998764

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=91.18  E-value=0.24  Score=45.80  Aligned_cols=35  Identities=14%  Similarity=0.148  Sum_probs=31.2

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      +.++|.|||+|.-|...|..|++.|+   +|+++|.++
T Consensus         3 ~~~kV~VIGaG~mG~~iA~~la~~G~---~V~l~d~~~   37 (283)
T 4e12_A            3 GITNVTVLGTGVLGSQIAFQTAFHGF---AVTAYDINT   37 (283)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC---eEEEEeCCH
Confidence            35799999999999999999999987   899998764

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=91.09  E-value=0.23  Score=48.22  Aligned_cols=36  Identities=25%  Similarity=0.410  Sum_probs=32.5

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL  243 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l  243 (488)
                      .+++|||+|.+|+-+|..|.+.|.+|+++++.+++-
T Consensus         4 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~G   39 (384)
T 2bi7_A            4 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIG   39 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcC
Confidence            479999999999999999999999999999876553

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=91.07  E-value=0.24  Score=48.06  Aligned_cols=34  Identities=18%  Similarity=0.165  Sum_probs=30.8

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      ..+|+|||+|.+|+.+|..++..|.   +|+++|..+
T Consensus       190 ~~kV~ViG~G~iG~~aa~~a~~lGa---~V~v~D~~~  223 (405)
T 4dio_A          190 AAKIFVMGAGVAGLQAIATARRLGA---VVSATDVRP  223 (405)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSST
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCC---EEEEEcCCH
Confidence            5799999999999999999999987   899999764

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=91.07  E-value=0.38  Score=45.14  Aligned_cols=85  Identities=16%  Similarity=0.158  Sum_probs=53.0

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEE
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK  287 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~  287 (488)
                      .++.|+|+|..|.-+|..|.+.|.+|+++.|.+  .             +.+++.|+.+.....-..+.+     + .+.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~-------------~~i~~~g~~~~~~~g~~~~~~-----~-~~~   61 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD--Y-------------EAIAGNGLKVFSINGDFTLPH-----V-KGY   61 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT--H-------------HHHHHTCEEEEETTCCEEESC-----C-CEE
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc--H-------------HHHHhCCCEEEcCCCeEEEee-----c-eee
Confidence            479999999999999999999999999987642  0             335667877653210001100     0 011


Q ss_pred             eCCCc-EEEcCEEEEeecCccCChhhhh
Q 011351          288 LEDGS-TIDADTIVIGIGAKPTVSPFER  314 (488)
Q Consensus       288 l~~g~-~i~~D~vi~a~G~~p~~~~~~~  314 (488)
                       .+-+ .-++|+||+|+-.....+.++.
T Consensus        62 -~~~~~~~~~D~vilavk~~~~~~~l~~   88 (312)
T 3hn2_A           62 -RAPEEIGPMDLVLVGLKTFANSRYEEL   88 (312)
T ss_dssp             -SCHHHHCCCSEEEECCCGGGGGGHHHH
T ss_pred             -cCHHHcCCCCEEEEecCCCCcHHHHHH
Confidence             1211 1268999999876655444444

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=90.88  E-value=0.28  Score=49.76  Aligned_cols=80  Identities=20%  Similarity=0.136  Sum_probs=57.3

Q ss_pred             hcCCeEEEECCCHHHHH-HHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcE
Q 011351          205 EKAKKVVVVGGGYIGME-VAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV  283 (488)
Q Consensus       205 ~~~~~vvVvG~G~~g~e-~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v  283 (488)
                      ...+++.+||-|-+|+- +|..|.++|.+|+..+....      ++     ..+.|++.||+++.+.....+        
T Consensus        17 ~~~~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~------~~-----~~~~L~~~gi~~~~G~~~~~~--------   77 (524)
T 3hn7_A           17 FQGMHIHILGICGTFMGSLALLARALGHTVTGSDANIY------PP-----MSTQLEQAGVTIEEGYLIAHL--------   77 (524)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC------TT-----HHHHHHHTTCEEEESCCGGGG--------
T ss_pred             ecCCEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCC------cH-----HHHHHHHCCCEEECCCCHHHc--------
Confidence            46789999999999997 68888999999999887542      11     235577889998866321110        


Q ss_pred             EEEEeCCCcEEEcCEEEEeecCccCChhh
Q 011351          284 AAVKLEDGSTIDADTIVIGIGAKPTVSPF  312 (488)
Q Consensus       284 ~~v~l~~g~~i~~D~vi~a~G~~p~~~~~  312 (488)
                               .-.+|.||+++|..++.+.+
T Consensus        78 ---------~~~~d~vV~Spgi~~~~p~l   97 (524)
T 3hn7_A           78 ---------QPAPDLVVVGNAMKRGMDVI   97 (524)
T ss_dssp             ---------CSCCSEEEECTTCCTTSHHH
T ss_pred             ---------CCCCCEEEECCCcCCCCHHH
Confidence                     01479999999998876643

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=90.74  E-value=0.25  Score=44.77  Aligned_cols=36  Identities=22%  Similarity=0.401  Sum_probs=32.0

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      ..+|+|||+|-.|..+|..|.+.|.  ++|+|+|.+..
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv--~~i~lvD~d~v   66 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGV--GNLTLLDFDTV   66 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTC--SEEEEECCCBC
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCC--CeEEEEcCCCc
Confidence            5789999999999999999999986  38999998753

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=90.73  E-value=0.25  Score=49.76  Aligned_cols=38  Identities=29%  Similarity=0.330  Sum_probs=33.8

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL  243 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l  243 (488)
                      ...+|+|||+|..|+-+|..|.+.|.+|+++++.+++-
T Consensus        12 ~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~G   49 (504)
T 1sez_A           12 SAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAG   49 (504)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCC
Confidence            35789999999999999999999999999999987653

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=90.72  E-value=0.29  Score=45.98  Aligned_cols=37  Identities=11%  Similarity=0.270  Sum_probs=31.8

Q ss_pred             CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (488)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~   86 (488)
                      +++.++|.|||+|..|.+.|..|++.++  .+|+++|..
T Consensus         5 ~~~~~kv~ViGaG~vG~~ia~~l~~~g~--~~v~l~D~~   41 (315)
T 3tl2_A            5 TIKRKKVSVIGAGFTGATTAFLLAQKEL--ADVVLVDIP   41 (315)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHHTTC--CEEEEECCG
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHhCCC--CeEEEEecc
Confidence            3456799999999999999999999876  489999975

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=90.67  E-value=0.3  Score=46.14  Aligned_cols=37  Identities=14%  Similarity=0.367  Sum_probs=31.5

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~   86 (488)
                      ....+|.|||+|..|.+.|..|+..+. -.+++++|..
T Consensus         3 ~~~~kI~ViGaG~vG~~~a~~l~~~~~-~~~l~l~D~~   39 (326)
T 3pqe_A            3 KHVNKVALIGAGFVGSSYAFALINQGI-TDELVVIDVN   39 (326)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC-CceEEEEecc
Confidence            345789999999999999999999886 3589999864

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=90.63  E-value=0.27  Score=47.84  Aligned_cols=36  Identities=19%  Similarity=0.293  Sum_probs=32.4

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcC
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  242 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~  242 (488)
                      ..+++|||+|.+|+-+|..|++.|.+|+++++.+++
T Consensus        29 ~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~   64 (397)
T 3hdq_A           29 GFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHI   64 (397)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCC
Confidence            347999999999999999999999999999987654

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=90.63  E-value=0.26  Score=48.89  Aligned_cols=35  Identities=26%  Similarity=0.396  Sum_probs=31.7

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcC
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  242 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~  242 (488)
                      .+|+|||+|..|+-+|..|.+.|.+|+++++.+++
T Consensus         6 ~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~   40 (453)
T 2yg5_A            6 RDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRV   40 (453)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence            47999999999999999999999999999987543

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=90.52  E-value=0.26  Score=47.22  Aligned_cols=37  Identities=19%  Similarity=0.238  Sum_probs=31.7

Q ss_pred             CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      .+++.+|.|||+|.-|.+.|..|++.|+   +|+++++++
T Consensus        26 ~~~~mkI~VIGaG~mG~alA~~La~~G~---~V~l~~r~~   62 (356)
T 3k96_A           26 EPFKHPIAILGAGSWGTALALVLARKGQ---KVRLWSYES   62 (356)
T ss_dssp             -CCCSCEEEECCSHHHHHHHHHHHTTTC---CEEEECSCH
T ss_pred             cccCCeEEEECccHHHHHHHHHHHHCCC---eEEEEeCCH
Confidence            3445789999999999999999999987   899998764

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=90.42  E-value=0.25  Score=47.44  Aligned_cols=35  Identities=17%  Similarity=0.070  Sum_probs=31.1

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      ...+|+|||+|..|+.+|..++..|.   +|+++|+.+
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa---~V~v~D~~~  217 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGA---KTTGYDVRP  217 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTC---EEEEECSSG
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            35799999999999999999999987   899998764

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=90.28  E-value=0.7  Score=43.22  Aligned_cols=72  Identities=21%  Similarity=0.331  Sum_probs=0.0

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL  288 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l  288 (488)
                      +++|||+|..|.-+|..|. .|.+|+++.|.+             .-.+.+++.|+.+...... ...        .+..
T Consensus         4 kI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~-------------~~~~~l~~~G~~~~~~~~~-~~~--------~~~~   60 (307)
T 3ego_A            4 KIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQ-------------EQAAAIQSEGIRLYKGGEE-FRA--------DCSA   60 (307)
T ss_dssp             EEEEECCSHHHHHHHHHHH-TTSEEEEECSCH-------------HHHHHHHHHCEEEEETTEE-EEE--------CCEE
T ss_pred             EEEEECCCHHHHHHHHHHh-cCCceEEEECCH-------------HHHHHHHhCCceEecCCCe-ecc--------cccc


Q ss_pred             CCCcEEEcCEEEEee
Q 011351          289 EDGSTIDADTIVIGI  303 (488)
Q Consensus       289 ~~g~~i~~D~vi~a~  303 (488)
                      .....-++|+||+|+
T Consensus        61 ~~~~~~~~D~vilav   75 (307)
T 3ego_A           61 DTSINSDFDLLVVTV   75 (307)
T ss_dssp             ESSCCSCCSEEEECC
T ss_pred             cccccCCCCEEEEEe

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=90.26  E-value=0.22  Score=48.43  Aligned_cols=33  Identities=18%  Similarity=0.238  Sum_probs=30.6

Q ss_pred             CeEEEECCCHHHHHHHHHHHh-CC-CcEEEEecCC
Q 011351          208 KKVVVVGGGYIGMEVAAAAVG-WK-LDTTIIFPEN  240 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~-~g-~~v~lv~~~~  240 (488)
                      ..|+|||+|..|+-+|..|++ .| .+|+++++.+
T Consensus        22 ~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~~   56 (405)
T 2gag_B           22 YDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGW   56 (405)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            469999999999999999999 89 9999999875

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=90.26  E-value=0.28  Score=46.23  Aligned_cols=32  Identities=16%  Similarity=0.425  Sum_probs=29.3

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~   86 (488)
                      ++|.|||+|.-|.+.|..|.+.|.   +|++++++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~---~V~~~~r~   34 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGH---CVSVVSRS   34 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTC---EEEEECST
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC---eEEEEeCC
Confidence            589999999999999999999886   89999865

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=90.25  E-value=0.3  Score=48.18  Aligned_cols=34  Identities=21%  Similarity=0.298  Sum_probs=31.4

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCc
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENH  241 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~-~v~lv~~~~~  241 (488)
                      ..|+|||+|..|+-+|..|++.|. +|+++++.+.
T Consensus         7 ~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~~   41 (438)
T 3dje_A            7 SSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPV   41 (438)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSCS
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence            479999999999999999999999 9999998754

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=90.16  E-value=0.43  Score=39.35  Aligned_cols=33  Identities=12%  Similarity=0.136  Sum_probs=30.3

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  239 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~  239 (488)
                      .++++|+|+|.+|..++..|.+.|.+|+++.+.
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~   35 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNL   35 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence            467999999999999999999999999999875

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=90.12  E-value=0.34  Score=45.63  Aligned_cols=37  Identities=19%  Similarity=0.366  Sum_probs=31.2

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~   86 (488)
                      +++.+|+|||+|..|.+.|..|...+. -.+|.++|.+
T Consensus         4 m~~~KI~IIGaG~vG~~la~~l~~~~~-~~ei~L~Di~   40 (317)
T 3d0o_A            4 FKGNKVVLIGNGAVGSSYAFSLVNQSI-VDELVIIDLD   40 (317)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHCS-CSEEEEECSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC-CCEEEEEeCC
Confidence            345799999999999999999998875 4589999854

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=90.05  E-value=0.34  Score=45.86  Aligned_cols=35  Identities=17%  Similarity=0.119  Sum_probs=30.1

Q ss_pred             CCCeEEEEcCchHHHH-HHHHHHHcCCCCCcEEEEcCCC
Q 011351           50 ENREFVIVGGGNAAGY-AARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~-aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      .+++|.|||.|.+|++ +|..|.++|+   +|++.|..+
T Consensus         3 ~~~~i~~iGiGg~Gms~~A~~L~~~G~---~V~~~D~~~   38 (326)
T 3eag_A            3 AMKHIHIIGIGGTFMGGLAAIAKEAGF---EVSGCDAKM   38 (326)
T ss_dssp             CCCEEEEESCCSHHHHHHHHHHHHTTC---EEEEEESSC
T ss_pred             CCcEEEEEEECHHHHHHHHHHHHhCCC---EEEEEcCCC
Confidence            3578999999999997 7888899988   899999764

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=90.04  E-value=0.4  Score=44.82  Aligned_cols=32  Identities=22%  Similarity=0.224  Sum_probs=29.0

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  239 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~  239 (488)
                      .+|.|||+|..|.-+|..|.+.|.+|+++.|.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~   35 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQW   35 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECC
Confidence            47999999999999999999999999988664

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=89.88  E-value=0.26  Score=48.17  Aligned_cols=36  Identities=19%  Similarity=0.388  Sum_probs=32.3

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCcC
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGW-KLDTTIIFPENHL  242 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~-g~~v~lv~~~~~~  242 (488)
                      ..+++|||+|..|+-+|..|++. |.+|+++++++++
T Consensus         7 ~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~   43 (399)
T 1v0j_A            7 RFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHI   43 (399)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            45799999999999999999998 9999999988654

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=89.82  E-value=0.27  Score=48.92  Aligned_cols=36  Identities=36%  Similarity=0.565  Sum_probs=32.1

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      .+.++|+|||||..|...+..|.+.|.   +|++++++.
T Consensus        10 l~~~~vlVvGgG~va~~k~~~L~~~ga---~V~vi~~~~   45 (457)
T 1pjq_A           10 LRDRDCLIVGGGDVAERKARLLLEAGA---RLTVNALTF   45 (457)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTB---EEEEEESSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCcC---EEEEEcCCC
Confidence            346899999999999999999999886   899999864

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=89.81  E-value=0.4  Score=47.65  Aligned_cols=78  Identities=13%  Similarity=0.170  Sum_probs=53.1

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEE
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  285 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~  285 (488)
                      .+++++|||+|.+|...+..|.+.|.+|+++.+.       +.++    +.+..++.+++++.+..    .         
T Consensus        11 ~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~-------~~~~----~~~l~~~~~i~~~~~~~----~---------   66 (457)
T 1pjq_A           11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALT-------FIPQ----FTVWANEGMLTLVEGPF----D---------   66 (457)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS-------CCHH----HHHHHTTTSCEEEESSC----C---------
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCC-------CCHH----HHHHHhcCCEEEEECCC----C---------
Confidence            5789999999999999999999999999999763       2232    23333345666654321    1         


Q ss_pred             EEeCCCcEEEcCEEEEeecCcc-CChh
Q 011351          286 VKLEDGSTIDADTIVIGIGAKP-TVSP  311 (488)
Q Consensus       286 v~l~~g~~i~~D~vi~a~G~~p-~~~~  311 (488)
                          .+.--.+|+||.+||... |...
T Consensus        67 ----~~~l~~~~lVi~at~~~~~n~~i   89 (457)
T 1pjq_A           67 ----ETLLDSCWLAIAATDDDTVNQRV   89 (457)
T ss_dssp             ----GGGGTTCSEEEECCSCHHHHHHH
T ss_pred             ----ccccCCccEEEEcCCCHHHHHHH
Confidence                111114799999999873 5443

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=89.78  E-value=0.35  Score=50.81  Aligned_cols=34  Identities=15%  Similarity=0.331  Sum_probs=31.3

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  241 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~  241 (488)
                      ..|+|||+|..|+-+|..|++.|.+|+++++.+.
T Consensus       273 ~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~  306 (676)
T 3ps9_A          273 REAAIIGGGIASALLSLALLRRGWQVTLYCADEA  306 (676)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence            5799999999999999999999999999998643

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=89.59  E-value=0.43  Score=45.36  Aligned_cols=36  Identities=22%  Similarity=0.334  Sum_probs=30.9

Q ss_pred             CCCeEEEEcC-chHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351           50 ENREFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKE   86 (488)
Q Consensus        50 ~~~~vvIIGg-G~AGl~aA~~L~~~g~~~~~V~lie~~   86 (488)
                      .+.+|+|||+ |..|.++|..+...|. ..+|+++|..
T Consensus         7 ~~~KV~ViGaaG~VG~~~a~~l~~~g~-~~evvLiDi~   43 (343)
T 3fi9_A            7 TEEKLTIVGAAGMIGSNMAQTAAMMRL-TPNLCLYDPF   43 (343)
T ss_dssp             CSSEEEEETTTSHHHHHHHHHHHHTTC-CSCEEEECSC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhcCC-CCEEEEEeCC
Confidence            3578999997 9999999999999886 4489999964

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=89.55  E-value=0.24  Score=47.25  Aligned_cols=32  Identities=31%  Similarity=0.433  Sum_probs=29.5

Q ss_pred             eEEEECCCHHHHHHHHHHHhCC------CcEEEEecCC
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWK------LDTTIIFPEN  240 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g------~~v~lv~~~~  240 (488)
                      .|+|||+|.+|+-+|..|++.|      .+|+++++..
T Consensus         2 dVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~   39 (351)
T 3g3e_A            2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF   39 (351)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred             cEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence            6899999999999999999997      8999999873

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=89.54  E-value=0.33  Score=51.20  Aligned_cols=35  Identities=17%  Similarity=0.268  Sum_probs=31.7

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcC
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  242 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~  242 (488)
                      ..|+|||+|..|+-+|..|++.|.+|+++++.+.+
T Consensus       265 ~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~~  299 (689)
T 3pvc_A          265 DDIAIIGGGIVSALTALALQRRGAVVTLYCADAQP  299 (689)
T ss_dssp             SSEEEECCSHHHHHHHHHHHTTTCCEEEEESSSST
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCcEEEEeCCCcc
Confidence            57999999999999999999999999999986433

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=89.43  E-value=0.42  Score=45.04  Aligned_cols=37  Identities=11%  Similarity=0.182  Sum_probs=31.4

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      |++.+|.|||+|..|.+.|..|...+. . +|+|+|..+
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l~~~~~-~-~v~L~Di~~   41 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLAGLKEL-G-DVVLFDIAE   41 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHTTC-C-EEEEECSSS
T ss_pred             CcCCEEEEECCCHHHHHHHHHHHhCCC-C-eEEEEeCCc
Confidence            456799999999999999999999886 3 899999654

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=89.43  E-value=0.32  Score=46.90  Aligned_cols=34  Identities=24%  Similarity=0.379  Sum_probs=30.9

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcC
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  242 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~  242 (488)
                      +++|||+|..|+-+|..|++.|.+|+++++.+++
T Consensus         3 ~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~   36 (367)
T 1i8t_A            3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHI   36 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence            5899999999999999999999999999987644

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=89.39  E-value=0.38  Score=49.19  Aligned_cols=34  Identities=26%  Similarity=0.367  Sum_probs=31.5

Q ss_pred             CCeEEEECCCHHHHHHHHHHHh---CCCcEEEEecCC
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVG---WKLDTTIIFPEN  240 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~---~g~~v~lv~~~~  240 (488)
                      ..+|+|||||..|+-+|..|++   .|.+|+|+++.+
T Consensus        25 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~   61 (550)
T 2e4g_A           25 IDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPD   61 (550)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCC
Confidence            5689999999999999999999   999999999864

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=89.27  E-value=0.32  Score=45.70  Aligned_cols=32  Identities=19%  Similarity=0.298  Sum_probs=28.5

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~   86 (488)
                      ++|.|||+|.-|.+.|..|.+.|.   +|++++++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~---~V~~~~r~   34 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGE---DVHFLLRR   34 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSC---CEEEECST
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCC---eEEEEEcC
Confidence            589999999999999999999886   89999865

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=89.23  E-value=0.37  Score=46.06  Aligned_cols=33  Identities=15%  Similarity=0.249  Sum_probs=29.4

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~   86 (488)
                      +.+|.|||+|.-|...|..|.+.|+   +|++++++
T Consensus         4 ~mki~iiG~G~~G~~~a~~L~~~g~---~V~~~~r~   36 (359)
T 1bg6_A            4 SKTYAVLGLGNGGHAFAAYLALKGQ---SVLAWDID   36 (359)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSC
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCC---EEEEEeCC
Confidence            4689999999999999999999886   79999865

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=89.17  E-value=0.43  Score=43.88  Aligned_cols=34  Identities=21%  Similarity=0.284  Sum_probs=30.4

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      +++|+|.|+|+-|...+..|.+.|+   +|+++++..
T Consensus         3 ~~~ilVtGaG~iG~~l~~~L~~~g~---~V~~~~r~~   36 (286)
T 3gpi_A            3 LSKILIAGCGDLGLELARRLTAQGH---EVTGLRRSA   36 (286)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTC---CEEEEECTT
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCc
Confidence            4689999999999999999999987   899998764

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=89.16  E-value=0.29  Score=43.30  Aligned_cols=35  Identities=20%  Similarity=0.323  Sum_probs=29.6

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEE-EcCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCI-VSKE   86 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~l-ie~~   86 (488)
                      +++.+|.|||+|.-|.+.|..|.+.|+   +|++ ++++
T Consensus        21 m~mmkI~IIG~G~mG~~la~~l~~~g~---~V~~v~~r~   56 (220)
T 4huj_A           21 QSMTTYAIIGAGAIGSALAERFTAAQI---PAIIANSRG   56 (220)
T ss_dssp             GGSCCEEEEECHHHHHHHHHHHHHTTC---CEEEECTTC
T ss_pred             hcCCEEEEECCCHHHHHHHHHHHhCCC---EEEEEECCC
Confidence            335689999999999999999999887   7888 6654

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=89.07  E-value=0.31  Score=48.61  Aligned_cols=34  Identities=32%  Similarity=0.462  Sum_probs=31.0

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCc
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENH  241 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g--~~v~lv~~~~~  241 (488)
                      .+|+|||+|.+|+-+|..|.+.|  .+|+++++.++
T Consensus         5 ~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~   40 (475)
T 3lov_A            5 KRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGER   40 (475)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSS
T ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            57999999999999999999999  99999998643

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=89.04  E-value=0.45  Score=44.95  Aligned_cols=37  Identities=19%  Similarity=0.534  Sum_probs=33.0

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      ...+|+|||+|-.|-.+|..|++.|.  ++++|+|.+..
T Consensus        33 ~~~~VlIvGaGGlGs~va~~La~aGV--g~ItlvD~D~V   69 (340)
T 3rui_A           33 KNTKVLLLGAGTLGCYVSRALIAWGV--RKITFVDNGTV   69 (340)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHTTC--CEEEEECCCBC
T ss_pred             hCCEEEEECCCHHHHHHHHHHHHcCC--CEEEEecCCEe
Confidence            46799999999999999999999997  49999998754

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=88.94  E-value=0.39  Score=44.86  Aligned_cols=32  Identities=13%  Similarity=0.232  Sum_probs=29.0

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~   86 (488)
                      .+|.|||+|.-|...|..|.+.|+   +|++++++
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~---~V~~~~r~   35 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGN---DVTLIDQW   35 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC---EEEEECSC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCC---cEEEEECC
Confidence            489999999999999999999887   89998865

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=88.89  E-value=0.44  Score=45.25  Aligned_cols=33  Identities=21%  Similarity=0.445  Sum_probs=29.4

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~   86 (488)
                      +.+|.|||+|.-|...|..|.+.|+   +|++++++
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~---~V~~~~r~   35 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGE---AINVLARG   35 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTC---CEEEECCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCC---EEEEEECh
Confidence            4589999999999999999999987   79998853

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=88.83  E-value=0.46  Score=49.77  Aligned_cols=37  Identities=24%  Similarity=0.520  Sum_probs=33.2

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcC
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  242 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~  242 (488)
                      ..++|+|||+|+.|+.+|..|.+.|.+|+++++.+++
T Consensus       106 ~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~  142 (662)
T 2z3y_A          106 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRV  142 (662)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            4578999999999999999999999999999987543

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=88.73  E-value=0.52  Score=44.32  Aligned_cols=36  Identities=11%  Similarity=0.362  Sum_probs=31.0

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~   86 (488)
                      ++.+|+|||+|..|.+.|..|+..+. ..+|+++|.+
T Consensus         5 ~~~kI~IIGaG~vG~sla~~l~~~~~-~~ev~l~Di~   40 (316)
T 1ldn_A            5 GGARVVVIGAGFVGASYVFALMNQGI-ADEIVLIDAN   40 (316)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSS
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCC-CCEEEEEeCC
Confidence            35699999999999999999998875 4589999965

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=88.66  E-value=0.15  Score=50.92  Aligned_cols=34  Identities=26%  Similarity=0.495  Sum_probs=30.9

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      .++|+|+|+|-.|.+.|..|.+.|+   +|++||+++
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~---~v~vId~d~   36 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENN---DITIVDKDG   36 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTE---EEEEEESCH
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCC---CEEEEECCH
Confidence            3579999999999999999998877   899999986

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=88.65  E-value=0.43  Score=43.19  Aligned_cols=37  Identities=19%  Similarity=0.300  Sum_probs=32.6

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      ...+|+|||+|-.|..+|..|++.|..  +++|+|.+..
T Consensus        27 ~~~~VlvvG~GglG~~va~~La~~Gvg--~i~lvD~d~v   63 (251)
T 1zud_1           27 LDSQVLIIGLGGLGTPAALYLAGAGVG--TLVLADDDDV   63 (251)
T ss_dssp             HTCEEEEECCSTTHHHHHHHHHHTTCS--EEEEECCCBC
T ss_pred             hcCcEEEEccCHHHHHHHHHHHHcCCC--eEEEEeCCCc
Confidence            357999999999999999999999973  8999998753

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=88.62  E-value=0.46  Score=51.11  Aligned_cols=35  Identities=23%  Similarity=0.502  Sum_probs=32.0

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  241 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~  241 (488)
                      .++|+|||+|+.|+.+|..|.+.|.+|+++++.++
T Consensus       278 ~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~  312 (852)
T 2xag_A          278 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDR  312 (852)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCc
Confidence            46899999999999999999999999999997754

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=88.55  E-value=0.85  Score=43.20  Aligned_cols=77  Identities=16%  Similarity=0.241  Sum_probs=49.4

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEE
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK  287 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~  287 (488)
                      .+|.|||+|..|.-+|..|.+.|.+|+++.|.+             . .+.+++.|+.+..... . ....    + .+ 
T Consensus         4 mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~~-------------~-~~~~~~~g~~~~~~~~-~-~~~~----~-~~-   61 (335)
T 3ghy_A            4 TRICIVGAGAVGGYLGARLALAGEAINVLARGA-------------T-LQALQTAGLRLTEDGA-T-HTLP----V-RA-   61 (335)
T ss_dssp             CCEEEESCCHHHHHHHHHHHHTTCCEEEECCHH-------------H-HHHHHHTCEEEEETTE-E-EEEC----C-EE-
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEEChH-------------H-HHHHHHCCCEEecCCC-e-EEEe----e-eE-
Confidence            579999999999999999999999999886531             1 1345677877653211 1 1100    0 11 


Q ss_pred             eCCCc-EEEcCEEEEeecCc
Q 011351          288 LEDGS-TIDADTIVIGIGAK  306 (488)
Q Consensus       288 l~~g~-~i~~D~vi~a~G~~  306 (488)
                      ..+-+ .-.+|+||+|+...
T Consensus        62 ~~~~~~~~~~D~Vilavk~~   81 (335)
T 3ghy_A           62 THDAAALGEQDVVIVAVKAP   81 (335)
T ss_dssp             ESCHHHHCCCSEEEECCCHH
T ss_pred             ECCHHHcCCCCEEEEeCCch
Confidence            11211 13589999997654

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=88.49  E-value=0.45  Score=46.42  Aligned_cols=34  Identities=15%  Similarity=0.140  Sum_probs=30.3

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      ..+|+|||+|.+|+.++..++..|.   +|+++|..+
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga---~V~v~D~~~  205 (401)
T 1x13_A          172 PAKVMVIGAGVAGLAAIGAANSLGA---IVRAFDTRP  205 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC---EEEEEcCCH
Confidence            5799999999999999999999886   799998764

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=88.42  E-value=0.42  Score=44.26  Aligned_cols=37  Identities=22%  Similarity=0.387  Sum_probs=32.7

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      ...+|+|||+|-.|-.+|..|++.|.  ++++|+|.+..
T Consensus        35 ~~~~VlVvGaGGlGs~va~~La~aGV--G~i~lvD~D~V   71 (292)
T 3h8v_A           35 RTFAVAIVGVGGVGSVTAEMLTRCGI--GKLLLFDYDKV   71 (292)
T ss_dssp             GGCEEEEECCSHHHHHHHHHHHHHTC--SEEEEECCCBC
T ss_pred             hCCeEEEECcCHHHHHHHHHHHHcCC--CEEEEECCCcc
Confidence            45799999999999999999999996  48999997753

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=88.41  E-value=0.62  Score=37.34  Aligned_cols=33  Identities=18%  Similarity=0.250  Sum_probs=29.2

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  239 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~  239 (488)
                      ..+++|+|+|.+|..++..|.+.|.+|+++.+.
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~   36 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDID   36 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            357999999999999999999999999988764

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=88.38  E-value=0.51  Score=44.37  Aligned_cols=36  Identities=11%  Similarity=0.275  Sum_probs=30.5

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      +.+|+|||+|..|...|..|.+.|+ ..+|+++|.++
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~g~-~~~V~l~d~~~   42 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQRGI-AREIVLEDIAK   42 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-CCEEEEEeCCh
Confidence            4589999999999999999999875 34799998753

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=88.20  E-value=0.6  Score=43.93  Aligned_cols=37  Identities=16%  Similarity=0.303  Sum_probs=31.7

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      |++.+|.|||+|..|.+.|..|+..+. . +++++|..+
T Consensus         3 m~~~kI~iiGaG~vG~~~a~~l~~~~~-~-~v~l~Di~~   39 (321)
T 3p7m_A            3 MARKKITLVGAGNIGGTLAHLALIKQL-G-DVVLFDIAQ   39 (321)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTC-C-EEEEECSSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC-c-eEEEEeCCh
Confidence            445799999999999999999999876 3 899999764

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=88.15  E-value=0.39  Score=44.17  Aligned_cols=33  Identities=21%  Similarity=0.346  Sum_probs=29.5

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~   86 (488)
                      +++|+|.|+|+-|...+..|.+.|+   +|+.+.+.
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~---~V~~~~r~   37 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGW---RIIGTSRN   37 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTC---EEEEEESC
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCC---EEEEEEcC
Confidence            4689999999999999999999987   89988764

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=87.90  E-value=0.56  Score=45.46  Aligned_cols=35  Identities=20%  Similarity=0.113  Sum_probs=30.7

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      ...+|+|||+|.+|+.++..++..|.   +|+++|..+
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga---~V~~~d~~~  205 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGA---VVMATDVRA  205 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence            45799999999999999999999886   799998664

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=87.88  E-value=0.61  Score=46.79  Aligned_cols=37  Identities=16%  Similarity=0.205  Sum_probs=32.8

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCC-CcEEEEecCCcC
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHL  242 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g-~~v~lv~~~~~~  242 (488)
                      ...+++|||+|..|+-+|..|.+.| .+|+++++.+++
T Consensus         8 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~   45 (484)
T 4dsg_A            8 LTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTP   45 (484)
T ss_dssp             CSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSS
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence            3468999999999999999999998 799999988654

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=87.84  E-value=0.54  Score=36.40  Aligned_cols=33  Identities=27%  Similarity=0.281  Sum_probs=29.4

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhCC-CcEEEEecC
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPE  239 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g-~~v~lv~~~  239 (488)
                      .++++|+|+|.+|..++..|.+.| .+|+++.+.
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~   38 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHD   38 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESC
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCC
Confidence            468999999999999999999999 788888764

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=87.81  E-value=0.47  Score=44.52  Aligned_cols=35  Identities=26%  Similarity=0.350  Sum_probs=30.6

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      ...+|.|||+|.-|...|..++..|+   +|+|+|.++
T Consensus         5 ~~~~VaViGaG~MG~giA~~~a~~G~---~V~l~D~~~   39 (319)
T 3ado_A            5 AAGDVLIVGSGLVGRSWAMLFASGGF---RVKLYDIEP   39 (319)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTC---CEEEECSCH
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhCCC---eEEEEECCH
Confidence            35689999999999999999999998   899999765

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=87.69  E-value=0.44  Score=46.63  Aligned_cols=34  Identities=15%  Similarity=0.415  Sum_probs=30.8

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      +.+|+|||.|.-|...|..|.+.|+   +|++||.++
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~---~vvvId~d~   37 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGV---KMVVLDHDP   37 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC---CEEEEECCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC---CEEEEECCH
Confidence            4579999999999999999999987   799999774

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=87.68  E-value=0.43  Score=44.36  Aligned_cols=32  Identities=13%  Similarity=0.182  Sum_probs=29.3

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~   86 (488)
                      ++|.|||+|.-|.+.|..|.+.|.   +|++++++
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~---~V~~~~r~   34 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLP---HTTLIGRH   34 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCT---TCEEEESS
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCC---eEEEEEec
Confidence            589999999999999999999986   89999876

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=87.53  E-value=0.65  Score=40.66  Aligned_cols=35  Identities=20%  Similarity=0.293  Sum_probs=29.8

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      ..++|.|||+|.-|.+.|..|.+.|+   +|+++++++
T Consensus        18 ~~~~I~iiG~G~mG~~la~~l~~~g~---~V~~~~~~~   52 (209)
T 2raf_A           18 QGMEITIFGKGNMGQAIGHNFEIAGH---EVTYYGSKD   52 (209)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTC---EEEEECTTC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC---EEEEEcCCH
Confidence            35689999999999999999999886   899998664

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=87.48  E-value=0.67  Score=43.81  Aligned_cols=35  Identities=11%  Similarity=0.247  Sum_probs=30.0

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      +.+|.|||+|.-|...|..|++.|+-  +|+++|.++
T Consensus        14 ~~kI~ViGaG~vG~~iA~~la~~g~~--~V~L~Di~~   48 (328)
T 2hjr_A           14 RKKISIIGAGQIGSTIALLLGQKDLG--DVYMFDIIE   48 (328)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCC--EEEEECSST
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCC--eEEEEECCH
Confidence            46899999999999999999998762  599999763

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=87.39  E-value=0.68  Score=37.25  Aligned_cols=33  Identities=15%  Similarity=0.149  Sum_probs=29.9

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  239 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~  239 (488)
                      .++++|+|+|.+|..++..|.+.|.+|+++.+.
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~   38 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDIN   38 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            568999999999999999999999999988764

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=87.35  E-value=0.73  Score=42.49  Aligned_cols=33  Identities=15%  Similarity=0.320  Sum_probs=29.3

Q ss_pred             CCeEEEEcC-chHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351           51 NREFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKE   86 (488)
Q Consensus        51 ~~~vvIIGg-G~AGl~aA~~L~~~g~~~~~V~lie~~   86 (488)
                      +.+|.|||+ |.-|...|..|.+.|+   +|++++++
T Consensus        11 mm~I~iIG~tG~mG~~la~~l~~~g~---~V~~~~r~   44 (286)
T 3c24_A           11 PKTVAILGAGGKMGARITRKIHDSAH---HLAAIEIA   44 (286)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHSSS---EEEEECCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC---EEEEEECC
Confidence            468999999 9999999999999886   79988754

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=87.33  E-value=0.57  Score=43.98  Aligned_cols=37  Identities=22%  Similarity=0.250  Sum_probs=32.5

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL  243 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l  243 (488)
                      .++|.|||+|..|.-+|..++..|.+|++++..+..+
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l   42 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQI   42 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHH
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHH
Confidence            5789999999999999999999999999998776443

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=87.33  E-value=0.67  Score=43.43  Aligned_cols=33  Identities=9%  Similarity=0.227  Sum_probs=29.2

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~   86 (488)
                      ..+|.|||+|.-|...|..|.+.|+   +|++++++
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~~g~---~V~~~~~~   62 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLKMGH---TVTVWNRT   62 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTC---CEEEECSS
T ss_pred             CCeEEEEcccHHHHHHHHHHHhCCC---EEEEEeCC
Confidence            4689999999999999999999886   79998765

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=87.30  E-value=0.57  Score=44.49  Aligned_cols=35  Identities=14%  Similarity=0.265  Sum_probs=29.7

Q ss_pred             CCCeEEEEcC-chHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           50 ENREFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        50 ~~~~vvIIGg-G~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      .+++|+|.|| |.-|...+..|.+.|+   +|+++.+.+
T Consensus         9 ~~~~IlVtGatG~iG~~l~~~L~~~g~---~V~~l~R~~   44 (346)
T 3i6i_A            9 PKGRVLIAGATGFIGQFVATASLDAHR---PTYILARPG   44 (346)
T ss_dssp             --CCEEEECTTSHHHHHHHHHHHHTTC---CEEEEECSS
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCC---CEEEEECCC
Confidence            3568999999 9999999999999986   799988764

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=87.26  E-value=0.54  Score=41.44  Aligned_cols=34  Identities=15%  Similarity=0.346  Sum_probs=30.1

Q ss_pred             CCeEEEEcC-chHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           51 NREFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        51 ~~~vvIIGg-G~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      +++|+|.|| |.-|...+..|.+.|+   +|+++++.+
T Consensus         4 m~~ilItGatG~iG~~l~~~L~~~g~---~V~~~~r~~   38 (227)
T 3dhn_A            4 VKKIVLIGASGFVGSALLNEALNRGF---EVTAVVRHP   38 (227)
T ss_dssp             CCEEEEETCCHHHHHHHHHHHHTTTC---EEEEECSCG
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCC---EEEEEEcCc
Confidence            468999996 9999999999999986   899998764

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=87.25  E-value=0.42  Score=43.79  Aligned_cols=34  Identities=24%  Similarity=0.492  Sum_probs=31.6

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  239 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~  239 (488)
                      .+++++|||+|.+|...+..|.+.|.+|+++.+.
T Consensus        12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~   45 (274)
T 1kyq_A           12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (274)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCC
Confidence            5789999999999999999999999999999764

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=87.23  E-value=0.68  Score=45.50  Aligned_cols=37  Identities=16%  Similarity=0.144  Sum_probs=32.8

Q ss_pred             CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      .+.+.+|.|||.|..|+..|..|++.|+   +|+.+|-++
T Consensus        18 ~~~m~~IaViGlGYVGLp~A~~~A~~G~---~V~g~Did~   54 (444)
T 3vtf_A           18 GSHMASLSVLGLGYVGVVHAVGFALLGH---RVVGYDVNP   54 (444)
T ss_dssp             TCCCCEEEEECCSHHHHHHHHHHHHHTC---EEEEECSCH
T ss_pred             CCCCCEEEEEccCHHHHHHHHHHHhCCC---cEEEEECCH
Confidence            3457899999999999999999999988   899999764

>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*

Probab=87.23  E-value=0.64  Score=45.04  Aligned_cols=40  Identities=15%  Similarity=0.219  Sum_probs=33.8

Q ss_pred             ccCCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           46 SFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        46 ~~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      ||.+++++|+|+|+|..|...+..+++.|+   ++.+++..+.
T Consensus         6 pm~~~~~~ili~g~g~~~~~~~~a~~~~G~---~v~~~~~~~~   45 (391)
T 1kjq_A            6 ALRPAATRVMLLGSGELGKEVAIECQRLGV---EVIAVDRYAD   45 (391)
T ss_dssp             TTSTTCCEEEEESCSHHHHHHHHHHHTTTC---EEEEEESSTT
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHcCC---EEEEEECCCC
Confidence            444566899999999999999999999987   7999987654

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=87.22  E-value=0.59  Score=46.35  Aligned_cols=33  Identities=21%  Similarity=0.331  Sum_probs=30.3

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      .+|.|||.|.-|+..|..|++.|+   +|+++|.++
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~---~V~~~D~~~   35 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGA---NVRCIDTDR   35 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC---EEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCC---EEEEEECCH
Confidence            589999999999999999999987   899999764

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=87.07  E-value=0.37  Score=47.70  Aligned_cols=31  Identities=26%  Similarity=0.371  Sum_probs=29.5

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCC-CcEEEEec
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFP  238 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g-~~v~lv~~  238 (488)
                      ..|+|||+|..|+-+|..|++.| .+|+++++
T Consensus        24 ~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~   55 (448)
T 3axb_A           24 FDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDA   55 (448)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCSCEEEEES
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCcEEEEcc
Confidence            47999999999999999999999 99999998

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=87.07  E-value=0.72  Score=42.11  Aligned_cols=33  Identities=18%  Similarity=0.442  Sum_probs=29.9

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~   86 (488)
                      .++++|||+|-+|-+++..|.+.|.   +|+|+.+.
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~---~v~V~nRt  150 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGL---QVSVLNRS  150 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC---EEEEEeCC
Confidence            6799999999999999999999984   89998765

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=87.06  E-value=0.45  Score=44.28  Aligned_cols=35  Identities=17%  Similarity=0.146  Sum_probs=30.4

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      ++++|.|||.|.-|...|..|++.|+   +|+++++++
T Consensus        14 ~~~~I~vIG~G~mG~~~A~~l~~~G~---~V~~~dr~~   48 (296)
T 3qha_A           14 EQLKLGYIGLGNMGAPMATRMTEWPG---GVTVYDIRI   48 (296)
T ss_dssp             -CCCEEEECCSTTHHHHHHHHTTSTT---CEEEECSST
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCC---eEEEEeCCH
Confidence            35689999999999999999999987   799988654

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=86.87  E-value=0.69  Score=43.19  Aligned_cols=34  Identities=26%  Similarity=0.363  Sum_probs=29.9

Q ss_pred             eEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      +|+|||+|..|.+.|..|+..|+ ..+|+++|.++
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~-~~eV~L~D~~~   35 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGS-CSELVLVDRDE   35 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-CCEEEEEeCCH
Confidence            79999999999999999999876 45799999763

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=86.85  E-value=0.66  Score=44.53  Aligned_cols=33  Identities=30%  Similarity=0.390  Sum_probs=29.8

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~   86 (488)
                      ..+|+|+|+|.+|..++..|+..|.   +|+++++.
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~Ga---~V~v~dr~  199 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLGA---QVQIFDIN  199 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC---EEEEEeCC
Confidence            4799999999999999999999886   89999865

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=86.80  E-value=0.78  Score=43.11  Aligned_cols=35  Identities=17%  Similarity=0.370  Sum_probs=30.1

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      +.+|.|||+|.-|...|..|++.|+.  +|+++|.++
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~--~V~l~D~~~   38 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLA--DVVLFDIAE   38 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCC--EEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCc--eEEEEeCCc
Confidence            46899999999999999999998752  699998753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	488
d1q1ra2	133	c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseud	2e-24
d1d7ya2	121	c.3.1.5 (A:116-236) NADH-dependent ferredoxin redu	3e-24
d1m6ia2	137	c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF	5e-23
d1nhpa2	123	c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus	5e-22
d1xhca2	122	c.3.1.5 (A:104-225) NADH oxidase /nitrite reductas	7e-18
d1gesa2	116	c.3.1.5 (A:147-262) Glutathione reductase {Escheri	3e-17
d1d7ya1	183	c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo	2e-16
d1d7ya1	183	c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo	3e-08
d1onfa2	117	c.3.1.5 (A:154-270) Glutathione reductase {Plasmod	7e-16
d1q1ra1	185	c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas	1e-15
d1q1ra1	185	c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas	8e-04
d1aoga2	117	c.3.1.5 (A:170-286) Trypanothione reductase {Trypa	5e-14
d1mo9a2	121	c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl co	2e-13
d1h6va2	122	c.3.1.5 (A:171-292) Mammalian thioredoxin reductas	1e-12
d1m6ia1	213	c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing f	2e-12
d1m6ia1	213	c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing f	2e-09
d1nhpa1	198	c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter	2e-12
d1feca2	117	c.3.1.5 (A:170-286) Trypanothione reductase {Crith	6e-12
d1lvla2	115	c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase	9e-11
d3grsa2	125	c.3.1.5 (A:166-290) Glutathione reductase {Human (	1e-09
d1djqa2	156	c.3.1.1 (A:490-645) Trimethylamine dehydrogenase,	3e-09
d1trba1	190	c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase	7e-09
d1ebda2	117	c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase	7e-09
d1ojta2	125	c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase	1e-08
d3lada2	119	c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase	1e-08
d1v59a2	122	c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase	1e-08
d1mo9a1	261	c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop	1e-08
d1xhca1	167	c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite	3e-08
d1xhca1	167	c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite	1e-05
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	1e-07
d1fcda1	186	c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf	2e-07
d1dxla2	123	c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase	1e-06
d3grsa1	221	c.3.1.5 (A:18-165,A:291-363) Glutathione reductase	2e-06
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	3e-06
d1ps9a2	162	c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-t	7e-06
d1fl2a1	184	c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide	9e-06
d1feca1	240	c.3.1.5 (A:1-169,A:287-357) Trypanothione reductas	1e-05
d1djqa3	233	c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehyd	1e-05
d1vdca1	192	c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase	2e-05
d2gjca1	311	c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th	5e-05
d1gesa1	217	c.3.1.5 (A:3-146,A:263-335) Glutathione reductase	9e-05
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	9e-05
d1v59a1	233	c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd	1e-04
d1lvla1	220	c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd	5e-04
d1gtea4	196	c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de	0.002
d1xdia1	233	c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehyd	0.002
d1gtea3	153	c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenas	0.003
d1aoga1	238	c.3.1.5 (A:3-169,A:287-357) Trypanothione reductas	0.003
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	0.003
d3lada1	229	c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd	0.004
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	0.004

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 133

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 96.1 bits (238), Expect = 2e-24
 Identities = 42/128 (32%), Positives = 69/128 (53%), Gaps = 1/128 (0%)

Query: 178 PEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIF 237
                G      Y+R + DA+ +   L    ++VV+GGGYIG+EVAA A+   +  T++ 
Sbjct: 6   ASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLD 65

Query: 238 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG-RVAAVKLEDGSTIDA 296
               +L+R+  P ++  YE L+++ GV    G  +   E  +D  +V AV  EDG+ + A
Sbjct: 66  TAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPA 125

Query: 297 DTIVIGIG 304
           D ++ GIG
Sbjct: 126 DLVIAGIG 133

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 121

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 95.6 bits (237), Expect = 3e-24
 Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 6/124 (4%)

Query: 181 IGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240
           + G    VH +R + DA  + + L    ++++VGGG IG+E+AA A    +  +++  + 
Sbjct: 4   LQGATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQP 63

Query: 241 HLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV 300
            L+ R    +LA    + +   GV      S+     G       V L+DG+ I AD +V
Sbjct: 64  RLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSVDG------VVLLDDGTRIAADMVV 117

Query: 301 IGIG 304
           +GIG
Sbjct: 118 VGIG 121

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.5 bits (229), Expect = 5e-23
 Identities = 27/132 (20%), Positives = 55/132 (41%), Gaps = 6/132 (4%)

Query: 177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAV----GWKLD 232
                          R + D  +L     + K + ++GGG++G E+A A          +
Sbjct: 7   IDRAGAEVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTE 66

Query: 233 TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS 292
              +FPE   + ++    L+    +  ++ GVK +  A ++++          +KL+DG 
Sbjct: 67  VIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGV--SSGKLLIKLKDGR 124

Query: 293 TIDADTIVIGIG 304
            ++ D IV  +G
Sbjct: 125 KVETDHIVAAVG 136

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 123

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 89.1 bits (220), Expect = 5e-22
 Identities = 32/124 (25%), Positives = 51/124 (41%), Gaps = 5/124 (4%)

Query: 182 GGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 239
           G  L  ++ +R    A  L       +   VVV+G GYIG+E A A        T+I   
Sbjct: 3   GKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDIL 62

Query: 240 NHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTI 299
           +  L             +  + N +    G +++  E   DGRV  V + D +  DAD +
Sbjct: 63  DRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEG--DGRVQKV-VTDKNAYDADLV 119

Query: 300 VIGI 303
           V+ +
Sbjct: 120 VVAV 123

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 122

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 77.4 bits (190), Expect = 7e-18
 Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 12/123 (9%)

Query: 185 LPG---VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH 241
           + G   +  +R + DAD +  S+E + + +++GGG+IG+E+A           +I     
Sbjct: 7   IKGKEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM 66

Query: 242 LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 301
            L       L+   + + ++ GVKF   + +   EA  +G      L +   I+    + 
Sbjct: 67  FLG--LDEELSNMIKDMLEETGVKFFLNSELL--EANEEGV-----LTNSGFIEGKVKIC 117

Query: 302 GIG 304
            IG
Sbjct: 118 AIG 120

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 116

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 75.6 bits (185), Expect = 3e-17
 Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 5/120 (4%)

Query: 185 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ 244
           +PGV Y  D     AL       ++V VVG GYIG+E+     G    T +    +  L 
Sbjct: 2   IPGVEYGIDSDGFFAL---PALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLP 58

Query: 245 RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 304
                  ++   ++    G +    A  K +   +DG +  ++LEDG +   D ++  IG
Sbjct: 59  SFDPMI-SETLVEVMNAEGPQLHTNAIPKAVVKNTDGSL-TLELEDGRSETVDCLIWAIG 116

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 75.2 bits (183), Expect = 2e-16
 Identities = 38/182 (20%), Positives = 66/182 (36%), Gaps = 18/182 (9%)

Query: 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE----------Q 257
             VVV+G G   +   A          I    +   +    P L++ +            
Sbjct: 4   APVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLD 63

Query: 258 LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL 317
             +   V+++ G + +      D +   V L DG T+   T+V+  GA P          
Sbjct: 64  CKRAPEVEWLLGVTAQ----SFDPQAHTVALSDGRTLPYGTLVLATGAAPRAVLANDALA 119

Query: 318 NSSV----GGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKA 373
            ++      GI VD   RT  P ++A+GDV      +  R  R+E   +A+       + 
Sbjct: 120 RAAGLACDDGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARH 179

Query: 374 LL 375
           L+
Sbjct: 180 LV 181

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 51.7 bits (122), Expect = 3e-08
 Identities = 36/184 (19%), Positives = 66/184 (35%), Gaps = 31/184 (16%)

Query: 55  VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGF 114
           V++G G A+        + G   G + +V  EA  PY+RP L+K ++   D +  R    
Sbjct: 7   VVLGAGLASVSFVAELRQAG-YQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIR---- 61

Query: 115 HTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTA 174
                        +  +   +E +      S D +  T+  + G+ L YG+L++ATG   
Sbjct: 62  ------------LDCKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAP 109

Query: 175 SRFPEKI-----------GGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVA 223
                              G     +      D  AL    +  ++   + G +  +E  
Sbjct: 110 RAVLANDALARAAGLACDDGIFVDAYGRTTCPDVYALG---DVTRQRNPLSGRFERIETW 166

Query: 224 AAAV 227
           + A 
Sbjct: 167 SNAQ 170

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 71.7 bits (175), Expect = 7e-16
 Identities = 27/128 (21%), Positives = 58/128 (45%), Gaps = 12/128 (9%)

Query: 177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTII 236
           FP      + G+       +      +++++KK+ +VG GYI +E+        +D+ I 
Sbjct: 1   FPP-----VKGIENTISSDEFF----NIKESKKIGIVGSGYIAVELINVIKRLGIDSYIF 51

Query: 237 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 296
              N +L++ F  S+    E   ++N +  V  A +  ++  SD  + ++ L DG   + 
Sbjct: 52  ARGNRILRK-FDESVINVLENDMKKNNINIVTFADVVEIKKVSDKNL-SIHLSDGRIYEH 109

Query: 297 -DTIVIGI 303
            D ++  +
Sbjct: 110 FDHVIYCV 117

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 72.9 bits (177), Expect = 1e-15
 Identities = 40/182 (21%), Positives = 62/182 (34%), Gaps = 16/182 (8%)

Query: 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTII--------------FPENHLLQRLFTPSLAQ 253
             VV+VG G  G+EVA        +  I                 + +L  +    SL  
Sbjct: 4   DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYL 63

Query: 254 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE 313
           R    Y    ++ + G  +  +      +V                  G    P      
Sbjct: 64  RTPDAYAAQNIQLLGGTQVTAINRDRQ-QVILSDGRALDYDRLVLATGGRPLIPNCELAS 122

Query: 314 RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKA 373
             GL     GI ++   +T  P I A+GD A F  ++YDR  R+E V +A + A+     
Sbjct: 123 AAGLQV-DNGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAI 181

Query: 374 LL 375
           L 
Sbjct: 182 LC 183

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 38.2 bits (87), Expect = 8e-04
 Identities = 31/182 (17%), Positives = 53/182 (29%), Gaps = 13/182 (7%)

Query: 49  NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKP 108
           N N   VIVG G A    A      G  +G + +V      P+  P L+K YL       
Sbjct: 1   NANDNVVIVGTGLAGVEVAFGLRASGW-EGNIRLVGDATVIPHHLPPLSKAYLAGKATAE 59

Query: 109 ARLPGFHTCVGSGGERQTPEW---YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGS 165
           +          +   +           +  + +      ++D ++  L T    L+    
Sbjct: 60  SLYLRTPDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPLIPNCE 119

Query: 166 LIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAA 225
           L  A G                   I  V D          A+    +   ++ +E    
Sbjct: 120 LASAAGLQVDNGIVINEHMQTSDPLIMAVGDC---------ARFHSQLYDRWVRIESVPN 170

Query: 226 AV 227
           A+
Sbjct: 171 AL 172

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 66.4 bits (161), Expect = 5e-14
 Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 6/121 (4%)

Query: 185 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAA--VGWKLDTTIIFPENHL 242
           +PG+ +     +A  L    E  ++V+ VGGG+I +E A        K     +     +
Sbjct: 1   IPGIEHCISSNEAFYL---PEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEM 57

Query: 243 LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG 302
           + R F  +L +   +    NG++ +   +   +E  +DG   +V  E G  +D D +++ 
Sbjct: 58  ILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGSK-SVTFESGKKMDFDLVMMA 116

Query: 303 I 303
           I
Sbjct: 117 I 117

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 121

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 64.6 bits (156), Expect = 2e-13
 Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 6/116 (5%)

Query: 194 VADADALISSL--EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSL 251
           V D   L+  L  E    VVVVGG    +E           T ++     L       + 
Sbjct: 7   VFDHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNET- 65

Query: 252 AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV---KLEDGSTIDADTIVIGIG 304
                   ++ G++ + G+++  +E  ++GRV AV          I+ D + +G+G
Sbjct: 66  RAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG 121

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 122

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 62.4 bits (151), Expect = 1e-12
 Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 9/104 (8%)

Query: 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 267
            K +VVG  Y+ +E A    G  LD T++     L    F   +A +  +  +++G+KF+
Sbjct: 21  GKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRG--FDQDMANKIGEHMEEHGIKFI 78

Query: 268 KGASIKNLEAGSDGRVAAVKL-------EDGSTIDADTIVIGIG 304
           +      +E    G    +K+       E+    + +T+++ +G
Sbjct: 79  RQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG 122

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.3 bits (155), Expect = 2e-12
 Identities = 44/198 (22%), Positives = 67/198 (33%), Gaps = 21/198 (10%)

Query: 48  ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKK 107
           A  +  F+++GGG AA  AAR+         R+ IVS++   PY RP L+K   F  D  
Sbjct: 1   APSHVPFLLIGGGTAAFAAARSIRARD-PGARVLIVSEDPELPYMRPPLSKELWFSDD-- 57

Query: 108 PARLPGFHTCVGSGGERQTP-------------EWYKEKGIEMIYQDPVTSIDIEKQTLI 154
           P           +G ER                   +  G+ ++    V  +D+    + 
Sbjct: 58  PNVTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVK 117

Query: 155 TNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKAKK 209
            N G  + Y   ++ATG T         G L              L +         A  
Sbjct: 118 LNDGSQITYEKCLIATGGTEPNVELAKTGGLEIDSDFGGFRVNAELQARSNIWVAGDAAC 177

Query: 210 VVVVGGGYIGMEVAAAAV 227
              +  G   +E    AV
Sbjct: 178 FYDIKLGRRRVEHHDHAV 195

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (132), Expect = 2e-09
 Identities = 33/218 (15%), Positives = 65/218 (29%), Gaps = 46/218 (21%)

Query: 208 KKVVVVGGGYIGMEVAAA--AVGWKLDTTIIFPENH------------------------ 241
              +++GGG      A +  A        I+  +                          
Sbjct: 5   VPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTL 64

Query: 242 -----------LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED 290
                      +  +  +  ++ +     +  GV  + G  +  L+   +        + 
Sbjct: 65  RFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQI 124

Query: 291 GSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKM 350
                      G      ++    + ++S  GG +V+ + + R   I+  GD A F    
Sbjct: 125 TYEKCLIAT-GGTEPNVELAKTGGLEIDSDFGGFRVNAELQARS-NIWVAGDAACFYDIK 182

Query: 351 YDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYF 388
             R  RVEH DHA  S +   + +  A        PY+
Sbjct: 183 LGRR-RVEHHDHAVVSGRLAGENMTGAAK------PYW 213

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 63.7 bits (153), Expect = 2e-12
 Identities = 31/190 (16%), Positives = 56/190 (29%), Gaps = 23/190 (12%)

Query: 209 KVVVVGGGYIGMEVAAAA--VGWKLDTTIIFPENHLL------------QRLFTPSLAQR 254
           KV+V+G  + G E       +    +       + +             +     S+   
Sbjct: 2   KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYM 61

Query: 255 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV-KLEDGSTIDADTIVIGIGAKPTVSPFE 313
             +  +  GV       I  ++              +    + D ++I  GA P      
Sbjct: 62  TGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDGV 121

Query: 314 RVGLNSSV--------GGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQ 365
           R               G I+ D   RT  P +FA+GD         D    +    +AR+
Sbjct: 122 RPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARK 181

Query: 366 SAQHCIKALL 375
             +  +K L 
Sbjct: 182 QGRFAVKNLE 191

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 60.2 bits (145), Expect = 6e-12
 Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 3/102 (2%)

Query: 205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE--NHLLQRLFTPSLAQRYEQLYQQN 262
           E  K+ + VGGGYI +E A     +K     +       ++ R F   L ++  +  + N
Sbjct: 16  EAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRAN 75

Query: 263 GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 304
           G+      +   +   +DG    V  E G+  D D +++ IG
Sbjct: 76  GINVRTHENPAKVTKNADGTR-HVVFESGAEADYDVVMLAIG 116

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 115

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 56.7 bits (136), Expect = 9e-11
 Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 8/121 (6%)

Query: 185 LP-GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL 243
           LP G   I     +   ++     + +VVVGGGYIG+E+  A        +++     +L
Sbjct: 2   LPLGGPVI----SSTEALAPKALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERIL 57

Query: 244 QRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGI 303
               +   A   E L ++ G+    G S++  E G    +A         ++AD +++ +
Sbjct: 58  PTYDSELTAPVAESL-KKLGIALHLGHSVEGYENG--CLLANDGKGGQLRLEADRVLVAV 114

Query: 304 G 304
           G
Sbjct: 115 G 115

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (129), Expect = 1e-09
 Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 11/127 (8%)

Query: 185 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ 244
           +PG            L    E   + V+VG GYI +E+A         T+++   + +L+
Sbjct: 3   IPGASLGITSDGFFQL---EELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLR 59

Query: 245 RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG-RVAAVKLEDG------STIDAD 297
             F   ++    +  +  GV+ +K + +K ++    G  V+ V    G         D D
Sbjct: 60  S-FDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVD 118

Query: 298 TIVIGIG 304
            ++  IG
Sbjct: 119 CLLWAIG 125

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 156

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

 Score = 53.7 bits (128), Expect = 3e-09
 Identities = 14/149 (9%), Positives = 36/149 (24%), Gaps = 8/149 (5%)

Query: 169 ATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVG 228
             G          G        +            + K   ++     ++   +A     
Sbjct: 4   TDGTNCLTHDPIPGADASLPDQL-TPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLAT 62

Query: 229 WKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL 288
              + TI+   +      FT        +   +  V+ +       +E G       +++
Sbjct: 63  AGHEVTIVSGVHLANYMHFTLE-YPNMMRRLHELHVEELGDHFCSRIEPGR------MEI 115

Query: 289 EDGSTIDADTIVIGIGAKPTVSPFERVGL 317
            +     +     G G  P  +      +
Sbjct: 116 YNIWGDGSKRTYRGPGVSPRDANTSHRWI 144

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 190

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

 Score = 53.3 bits (127), Expect = 7e-09
 Identities = 29/164 (17%), Positives = 49/164 (29%), Gaps = 20/164 (12%)

Query: 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK 265
           K  K++++G G  G   A  A    L   +I       Q   T  +           G  
Sbjct: 4   KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPL 63

Query: 266 FVKGASIKNLEAGSDGRVAAVKLEDGST-----------IDADTIVIGIGAKP----TVS 310
            ++       +  ++     +   D                 D ++I  GA        +
Sbjct: 64  LMERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYHSPNT 123

Query: 311 PFERVGLNSSVGGIQVDG-----QFRTRMPGIFAIGDVAAFPLK 349
                 L    G I+V         +T +PG+FA GDV     +
Sbjct: 124 AIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYR 167

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 51.7 bits (123), Expect = 7e-09
 Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 2/117 (1%)

Query: 186 PGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR 245
           P   +   + D+   ++  E  K +VV+GGGYIG+E+  A   +    TI+     +L  
Sbjct: 1   PNFKFSNRILDSTGALNLGEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG 60

Query: 246 LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG-RVAAVKLEDGSTIDADTIVI 301
            F   +A   ++  ++ GV+ V  A  K  E   DG  V      +  TIDAD +++
Sbjct: 61  -FEKQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLV 116

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 125

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 51.4 bits (122), Expect = 1e-08
 Identities = 18/122 (14%), Positives = 45/122 (36%), Gaps = 3/122 (2%)

Query: 185 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ 244
           LP +     + D+   ++  E   K++++GGG IG+E+            ++   +  L 
Sbjct: 4   LPFIPEDPRIIDSSGALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDG-LM 62

Query: 245 RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIG 302
           +     L + +++  +      +       +E   DG     +  +        D +++ 
Sbjct: 63  QGADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVA 122

Query: 303 IG 304
            G
Sbjct: 123 AG 124

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 119

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 50.9 bits (121), Expect = 1e-08
 Identities = 20/112 (17%), Positives = 47/112 (41%), Gaps = 2/112 (1%)

Query: 194 VADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQ 253
           + D+   +       K+ V+G G IG+E+ +       + T++   +          +A+
Sbjct: 9   IVDSTGALDFQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDK-FLPAVDEQVAK 67

Query: 254 RYEQLYQQNGVKFVKGASIKNLEAGSDG-RVAAVKLEDGSTIDADTIVIGIG 304
             +++  + G+K + GA +   E  +    V  V  E   +   D +++ +G
Sbjct: 68  EAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG 119

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 122

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.0 bits (121), Expect = 1e-08
 Identities = 20/122 (16%), Positives = 53/122 (43%), Gaps = 7/122 (5%)

Query: 186 PGVHYI-RDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ 244
           PG+      +  +   +S  E  K++ ++GGG IG+E+ +         T++  +   + 
Sbjct: 1   PGIEIDEEKIVSSTGALSLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQ-IG 59

Query: 245 RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-----TIDADTI 299
                 +A+  ++  ++ G+ F     + + +   D  V  + +ED        ++A+ +
Sbjct: 60  ASMDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVL 119

Query: 300 VI 301
           ++
Sbjct: 120 LV 121

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 53.4 bits (127), Expect = 1e-08
 Identities = 28/218 (12%), Positives = 59/218 (27%), Gaps = 58/218 (26%)

Query: 188 VHYIRDVADADALISSLEKAKK----VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL- 242
           +  I +  D   +I ++++        + +GGG  G   +A          I+     L 
Sbjct: 19  IDEILEAPDGGEVIYNVDENDPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLG 78

Query: 243 ---LQRLFTPS-----------------------------------LAQRYEQLYQQNGV 264
                    P                                    +          +G+
Sbjct: 79  GSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVGIKEVVDLFRAGRNGPHGI 138

Query: 265 KFVKGASIKNLEAGSDGRV----AAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS 320
              +     NLE   +              G    A  +++ +GA P          ++ 
Sbjct: 139 MNFQSKEQLNLEYILNCPAKVIDNHTVEAAGKVFKAKNLILAVGAGPGTLDVPEQPRSAE 198

Query: 321 V-----------GGIQVDGQFRTRMPGIFAIGDVAAFP 347
           +           G + V+   +T +P ++A+GD+   P
Sbjct: 199 LAKILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGGP 236

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 167

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 50.9 bits (120), Expect = 3e-08
 Identities = 38/173 (21%), Positives = 58/173 (33%), Gaps = 15/173 (8%)

Query: 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVK 268
           KVV+VG G  G E+A        + T+I  E          S          +     + 
Sbjct: 2   KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLD 60

Query: 269 ------GASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVG 322
                        EA    R   V + +   +  DT+V+  GA        R G+++   
Sbjct: 61  WYRKRGIEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGAPNV-DLARRSGIHTG-R 118

Query: 323 GIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 375
           GI +D  FRT    ++AIGD A +                A + A+     L 
Sbjct: 119 GILIDDNFRTSAKDVYAIGDCAEYSG------IIAGTAKAAMEQARVLADILK 165

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 167

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 43.2 bits (100), Expect = 1e-05
 Identities = 32/183 (17%), Positives = 50/183 (27%), Gaps = 35/183 (19%)

Query: 55  VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYL----------FPL 104
           VIVG G      A+   +       + ++ KE    Y +P L+              + L
Sbjct: 4   VIVGNGPGGFELAKQLSQ----TYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSL 59

Query: 105 DKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYG 164
           D    R         +    +  +    +  E+ Y   V +       L   SG     G
Sbjct: 60  DWYRKRGIEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGAPNVDLARRSGIHTGRG 119

Query: 165 SLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAA 224
            LI     T              V+ I D A+              ++ G     ME A 
Sbjct: 120 ILIDDNFRT----------SAKDVYAIGDCAE-----------YSGIIAGTAKAAMEQAR 158

Query: 225 AAV 227
              
Sbjct: 159 VLA 161

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 50.2 bits (119), Expect = 1e-07
 Identities = 47/234 (20%), Positives = 71/234 (30%), Gaps = 74/234 (31%)

Query: 210 VVVVGGGYIGMEVAAAAVGWKLDTTII--------------------------------- 236
            +VVG G  G   A  A       TI+                                 
Sbjct: 6   TLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHS 65

Query: 237 -------------FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG-ASIKNLEAGSDGR 282
                        F +    +      L    E L + N V+ VKG A            
Sbjct: 66  EEMGIKAENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFV-----DANT 120

Query: 283 VAAVKLEDGSTIDADTIVIGIGAKPTVSP----------FERVGLN-SSVGGIQVDGQFR 331
           V  V  +   T      +I  G++P               E++G+  ++ G I+VD Q R
Sbjct: 121 VRVVNGDSAQTYTFKNAIIATGSRPIELVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCR 180

Query: 332 TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYL 385
           T +P IFAIGD+   P         + H   A    +   +A+    +   DY+
Sbjct: 181 TSVPNIFAIGDIVPGPA--------LAHK--ASYEGKVAAEAIAGHPSA-VDYV 223

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

 Score = 49.0 bits (115), Expect = 2e-07
 Identities = 34/187 (18%), Positives = 59/187 (31%), Gaps = 22/187 (11%)

Query: 207 AKKVVVVGGGYIGMEVAAA--AVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGV 264
            +KVVVVGGG  G   A         ++ T+I P         +  +     +L      
Sbjct: 2   GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHG 61

Query: 265 KFVKGASIKNL----EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP----------TVS 310
                A    +      G D     VK   G+    D  V+  G +            ++
Sbjct: 62  YDGLRAHGIQVVHDSATGIDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKIA 121

Query: 311 PFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVA-AFPLKMYDRTARVEHVDHARQSAQH 369
               +  ++    + +     +   GI  IGD + A P+     +A        + +A  
Sbjct: 122 QIAGLTNDAGWCPVDIKTFESSIHKGIHVIGDASIANPMPKSGYSA----NSQGKVAAAA 177

Query: 370 CIKALLS 376
            +  LL 
Sbjct: 178 -VVVLLK 183

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 123

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 45.2 bits (106), Expect = 1e-06
 Identities = 26/121 (21%), Positives = 59/121 (48%), Gaps = 5/121 (4%)

Query: 185 LPGVHYI-RDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL 243
           LPGV    + +  +   ++  E  KK+VV+G GYIG+E+ +       + T++   +  +
Sbjct: 2   LPGVTIDEKKIVSSTGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASE-I 60

Query: 244 QRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG---STIDADTIV 300
                  + +++++  ++ G+KF     +  ++   DG    V+   G   + I+AD ++
Sbjct: 61  VPTMDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVL 120

Query: 301 I 301
           +
Sbjct: 121 V 121

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (110), Expect = 2e-06
 Identities = 34/191 (17%), Positives = 50/191 (26%), Gaps = 53/191 (27%)

Query: 210 VVVVGGGYIGMEVAAAAVGWKLDTTII----------------------FPENHLLQRLF 247
            +V+GGG  G+  A  A        ++                         +       
Sbjct: 6   YLVIGGGSGGLASARRAAELGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDH 65

Query: 248 TPSLAQRYEQLYQQNGVKFVKGASIK------------------NLEAGSDGRVAAVKLE 289
                   E  +    +K  + A +                      A            
Sbjct: 66  ADYGFPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEV 125

Query: 290 DGSTIDADTIVIGIGAKPTVSPFERV----GLN--------SSVGGIQVDGQFRTRMPGI 337
            G    A  I+I  G  P+  P ERV     L+           G I VD    T + GI
Sbjct: 126 SGKKYTAPHILIATGGMPST-PHERVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGI 184

Query: 338 FAIGDVAAFPL 348
           +A+GDV    L
Sbjct: 185 YAVGDVCGKAL 195

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 46.0 bits (108), Expect = 3e-06
 Identities = 40/191 (20%), Positives = 67/191 (35%), Gaps = 53/191 (27%)

Query: 210 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL------------LQRLFTPSLAQRYEQ 257
           VV++GGG  G   A  A      TT I     L               L +  +    + 
Sbjct: 6   VVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKH 65

Query: 258 LYQQNGVKFV------------KGASIKNLEAGSDGRVAAVKLE---------------- 289
            +  +GVK              K  ++ NL  G +G     K+                 
Sbjct: 66  SFANHGVKVSNVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISV 125

Query: 290 -----DGSTIDADTIVIGIGAKPT-VSPF------ERVGLN-SSVGGIQVDGQFRTRMPG 336
                + + +    I+I  G+     +PF      +++G+    +G I V+ +F T + G
Sbjct: 126 DTIEGENTVVKGKHIIIATGSDVKGRTPFTSGLNLDKIGVETDKLGRILVNERFSTNVSG 185

Query: 337 IFAIGDVAAFP 347
           ++AIGDV   P
Sbjct: 186 VYAIGDVIPGP 196

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 162

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 44.1 bits (103), Expect = 7e-06
 Identities = 26/166 (15%), Positives = 42/166 (25%), Gaps = 45/166 (27%)

Query: 176 RFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAV-------- 227
           R P   G   P V    DV     L        KV ++G G IG + A            
Sbjct: 3   RTPPIDGIDHPKVLSYLDV-----LRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQ 57

Query: 228 -----------------------------GWKLDTTIIFPENHLLQRLFTPSLAQRYEQL 258
                                               ++  +     +    +    +   
Sbjct: 58  NIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTT 117

Query: 259 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 304
               GVK + G S +  +   DG    +   +   +  D +VI  G
Sbjct: 118 LLSRGVKMIPGVSYQ--KIDDDGLHVVIN-GETQVLAVDNVVICAG 160

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

 Score = 44.0 bits (102), Expect = 9e-06
 Identities = 24/155 (15%), Positives = 47/155 (30%), Gaps = 15/155 (9%)

Query: 210 VVVVGGGYIGMEVAAAAVGWKLDTTIIF--PENHLLQRLFTPSLAQRYEQLYQQNGVKFV 267
           V++VG G  G   A  +    + T ++       +L  +   +     +   Q+      
Sbjct: 4   VLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALK 63

Query: 268 KGASIKNLEAGSDGRVAAVKLEDG-------------STIDADTIVIGIGAKPTVSPFER 314
                 +++       + +                         IV      P  +  E 
Sbjct: 64  VHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTNWLEG 123

Query: 315 VGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 349
               + +G I +D +  T + G+FA GD    P K
Sbjct: 124 AVERNRMGEIIIDAKCETNVKGVFAAGDCTTVPYK 158

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 240

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 44.2 bits (103), Expect = 1e-05
 Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 12/104 (11%)

Query: 257 QLYQQNGVKFVKG-ASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--- 312
                 G+ F +G  ++++         A        T+D + I++  G+ P        
Sbjct: 112 MFADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSWPQHLGIEVP 171

Query: 313 -------ERVGLNSSVGG-IQVDGQFRTRMPGIFAIGDVAAFPL 348
                  E+ G+  +  G I+VD   +T +  I+AIGDV    +
Sbjct: 172 RSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTDRVM 215

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 233

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

 Score = 44.0 bits (102), Expect = 1e-05
 Identities = 26/224 (11%), Positives = 61/224 (27%), Gaps = 26/224 (11%)

Query: 37  RRGFVVAYSSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPAL 96
           RRG+              +IVG G +   AAR  +E G                      
Sbjct: 35  RRGWHPEKFRQTKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTD--------------- 79

Query: 97  TKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITN 156
                   +K    L       G G      ++ + +  +++ ++  + + + ++ +  +
Sbjct: 80  ------TAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKESQLALGQKPMTAD 133

Query: 157 SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGG 216
                    +I+ATG +                   D+     +    +     ++    
Sbjct: 134 DVLQYGADKVIIATGAS-ECTLWNELKARESEWAENDIKGIYLIG---DAEAPRLIADAT 189

Query: 217 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ 260
           + G  VA           I +    +            ++  Y+
Sbjct: 190 FTGHRVAREIEEANPQIAIPYKRETIAWGTPHMP-GGNFKIEYK 232

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 192

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 43.0 bits (100), Expect = 2e-05
 Identities = 27/167 (16%), Positives = 48/167 (28%), Gaps = 22/167 (13%)

Query: 205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTII----------------FPENHLLQRLFT 248
               ++ +VG G      A  A   +L   +                   +         
Sbjct: 3   THNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPE 62

Query: 249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 308
             L       +++   +F      + +              D   I AD +++ IGA   
Sbjct: 63  GILGVELTDKFRKQSERFGTTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGAVAK 122

Query: 309 VSPFERVGLNSSV-----GGIQVD-GQFRTRMPGIFAIGDVAAFPLK 349
                   L+  V     G +    G  +T +PG+FA GDV     +
Sbjct: 123 GHEPATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKYR 169

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.0 bits (100), Expect = 5e-05
 Identities = 6/84 (7%), Positives = 24/84 (28%)

Query: 264 VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGG 323
           +   K    ++L       ++    +          ++ I     +   + + +N +   
Sbjct: 198 LAGYKNDGTRDLSQKHGVILSTTGHDGPFGAFCAKRIVDIDQNQKLGGMKGLDMNHAEHD 257

Query: 324 IQVDGQFRTRMPGIFAIGDVAAFP 347
           + +       +  ++  G   A  
Sbjct: 258 VVIHSGAYAGVDNMYFAGMEVAEL 281

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 41.5 bits (96), Expect = 9e-05
 Identities = 29/183 (15%), Positives = 52/183 (28%), Gaps = 48/183 (26%)

Query: 210 VVVVGGGYIGMEVAAAAVGWKLDTTII-----------FPENHLLQRLFTPSLAQRYEQL 258
            + +GGG  G+     A  +     +I                         + +     
Sbjct: 5   YIAIGGGSGGIASINRAAMYGQKCALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHMY 64

Query: 259 YQQNGVKFV------------KGASIKNLEAGSDGRVAAVKLE----------------D 290
               G                + A I  +    +  +    ++                +
Sbjct: 65  GPDYGFDTTINKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEVN 124

Query: 291 GSTIDADTIVIGIGAKPTVSPF---ERVGLN------SSVGGIQVDGQFRTRMPGIFAIG 341
           G TI AD I+I  G +P+       + + L       +  G I VD    T + GI+A+G
Sbjct: 125 GETITADHILIATGGRPSHPREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVG 184

Query: 342 DVA 344
           D  
Sbjct: 185 DNT 187

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 41.5 bits (96), Expect = 9e-05
 Identities = 14/27 (51%), Positives = 19/27 (70%)

Query: 322 GGIQVDGQFRTRMPGIFAIGDVAAFPL 348
           G I+VD Q RT +P I+AIGD+   P+
Sbjct: 179 GFIEVDKQMRTNVPHIYAIGDIVGQPM 205

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (96), Expect = 1e-04
 Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 14/107 (13%)

Query: 255 YEQLYQQNGVKFVKG-ASI--KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP 311
            E L+++N V + KG  S   +     +        +++   +D   I++  G++ T   
Sbjct: 102 IELLFKKNKVTYYKGNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFV 161

Query: 312 ----------FERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFP 347
                      E++GL     G + +D QF ++ P I  +GDV   P
Sbjct: 162 GRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDVTFGP 208

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 39.2 bits (90), Expect = 5e-04
 Identities = 22/189 (11%), Positives = 52/189 (27%), Gaps = 50/189 (26%)

Query: 210 VVVVGGGYIGMEVAAAAVGWKLDTTII-----------FPENHLLQRLFTPSLAQRYEQL 258
           ++++GGG  G   A  A    + T ++                    +       +  + 
Sbjct: 8   LLIIGGGPGGYVAAIRAGQLGIPTVLVEGQALGGTCLNIGCIPSKALIHVAEQFHQASRF 67

Query: 259 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-------------------------- 292
            + + +     +   ++      +   V                                
Sbjct: 68  TEPSPLGISVASPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVE 127

Query: 293 ----TIDADTIVIGIGAKPTVSPFERVGLNSSV---------GGIQVDGQFRTRMPGIFA 339
                I  + +++  G+     P        ++           I +D + +T M  ++A
Sbjct: 128 VDGQRIQCEHLLLATGSSSVELPRRPRTKGFNLECLDLKMNGAAIAIDERCQTSMHNVWA 187

Query: 340 IGDVAAFPL 348
           IGDVA  P+
Sbjct: 188 IGDVAGEPM 196

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 37.4 bits (85), Expect = 0.002
 Identities = 34/197 (17%), Positives = 53/197 (26%), Gaps = 21/197 (10%)

Query: 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 267
            K+ ++G G   +  A+           IF +   +  L T  + Q        N    +
Sbjct: 5   AKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIEL 64

Query: 268 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV------SPFERVGLNSSV 321
                  +  G       + L            IGIG    +           +  N   
Sbjct: 65  MKDLGVKIICGKSLSENEITLNTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKFNRWD 124

Query: 322 GGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHC------IKALL 375
                    +T  P +FA GD+          T     V+      Q        I+A  
Sbjct: 125 LPEVDPETMQTSEPWVFAGGDIVGMA-----NTT----VESVNDGKQASWYIHKYIQAQY 175

Query: 376 SAQTHTYDYLPYFYSRV 392
            A       LP FY+ V
Sbjct: 176 GASVSAKPELPLFYTPV 192

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 37.4 bits (85), Expect = 0.002
 Identities = 9/26 (34%), Positives = 11/26 (42%)

Query: 322 GGIQVDGQFRTRMPGIFAIGDVAAFP 347
             + VD   RT   GI+A GD     
Sbjct: 182 NYLTVDRVSRTLATGIYAAGDCTGLL 207

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} Length = 153

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 36.3 bits (83), Expect = 0.003
 Identities = 14/109 (12%), Positives = 33/109 (30%), Gaps = 12/109 (11%)

Query: 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIF-----PENHLLQRLFTPSLAQRYEQLYQQN 262
             V+V+G G    + A +A+        +           +      +  ++ E L   +
Sbjct: 46  GAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEVELAKEEKCEFLPFLS 105

Query: 263 GVKF------VKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 305
             K       +        E    G+    + +    + AD ++   G+
Sbjct: 106 PRKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQI-VHLKADVVISAFGS 153

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 238

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 36.9 bits (84), Expect = 0.003
 Identities = 13/26 (50%), Positives = 16/26 (61%)

Query: 322 GGIQVDGQFRTRMPGIFAIGDVAAFP 347
           GG+QVD   RT +  I+AIGDV    
Sbjct: 188 GGVQVDEYSRTNVSNIYAIGDVTNRV 213

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 37.2 bits (84), Expect = 0.003
 Identities = 41/331 (12%), Positives = 87/331 (26%), Gaps = 37/331 (11%)

Query: 55  VIVGGGNAAGYAARTFVEHGMAD-----------GRLCIVSKEAYAPYERPALTKGYLFP 103
           ++VG G +   AA+   E G+ D           GR+   +                   
Sbjct: 4   IVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGI-----NVELGANWVE 58

Query: 104 LDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKY 163
                   P +     +   R     +      +  +D     +   Q  I  +  + + 
Sbjct: 59  GVNGGKMNPIWPIVNSTLKLRNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIELADSVEEM 118

Query: 164 GSLIVATGCTASR------FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGY 217
           G  + AT   + R        +++  + P           D      E A+   V     
Sbjct: 119 GEKLSATLHASGRDDMSILAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEPPRVTSLQN 178

Query: 218 IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 277
                  +  G  +           +         +  ++  +    +      ++ ++ 
Sbjct: 179 TVPLATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIK- 237

Query: 278 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS---------PFERVGLNSSVGGIQVD- 327
                   VK ED S   AD +++        S         P  +V        + V+ 
Sbjct: 238 -YSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFWPVGVNR 296

Query: 328 ---GQFRTRMPGIFAIGDVAAFPLKMYDRTA 355
               Q R  +  ++  G+  +     Y   A
Sbjct: 297 YEYDQLRAPVGRVYFTGEHTSEHYNGYVHGA 327

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 322 GGIQVDGQFRTRMPGIFAIGDVAAFP 347
           G I VD    T +PG++AIGDV    
Sbjct: 179 GFIYVDDYCATSVPGVYAIGDVVRGA 204

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.7 bits (83), Expect = 0.004
 Identities = 8/51 (15%), Positives = 15/51 (29%)

Query: 250 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV 300
            L Q + +L    G  ++    I  +    D            T  A  ++
Sbjct: 237 ELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVI 287

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	488
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.91
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.9
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.9
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.87
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.87
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	99.87
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.84
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.8
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.76
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.76
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	99.76
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	99.73
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	99.72
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.71
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.7
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.69
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.68
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.68
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.68
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.67
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.67
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	99.66
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.65
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.65
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	99.64
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.63
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	99.63
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	99.63
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	99.61
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	99.61
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	99.59
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.59
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	99.57
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.55
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	99.54
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.54
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.53
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	99.51
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.48
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	99.43
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.41
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.36
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	99.32
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	99.31
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	99.28
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.25
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.23
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	99.23
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.23
d1q1ra3	103	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.23
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.21
d1d7ya3	97	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.18
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.18
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	99.17
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.17
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.13
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.12
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.12
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	99.12
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.1
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	99.07
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.06
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.06
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	99.06
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.05
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.04
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.02
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.0
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.99
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	98.98
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.98
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.98
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	98.97
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.97
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	98.95
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.94
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.94
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	98.94
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.93
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.93
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.87
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.86
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.86
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.85
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.85
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.84
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	98.84
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.82
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	98.82
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	98.81
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.81
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	98.81
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.81
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.8
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	98.8
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	98.79
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	98.79
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.78
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.76
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.72
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.7
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	98.68
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	98.63
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	98.62
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	98.59
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.57
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.56
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	98.52
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	98.52
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	98.51
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	98.5
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.49
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.47
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	98.45
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.41
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	98.39
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	98.38
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.38
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	98.35
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.34
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.26
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.24
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	98.22
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.21
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.21
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	98.21
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.2
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.19
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.18
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	98.17
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.17
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	98.13
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.12
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	98.11
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	98.1
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	98.09
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	98.06
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.06
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.03
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	97.98
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	97.98
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	97.97
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	97.95
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	97.92
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	97.85
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	97.85
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	97.83
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	97.82
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	97.79
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	97.75
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	97.73
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	97.72
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	97.69
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	97.68
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	97.64
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	97.63
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	97.6
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	97.58
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	97.43
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	97.43
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	97.41
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	97.39
d1v59a3	123	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	97.39
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	97.36
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	97.23
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	97.23
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	97.2
d3lada3	124	Dihydrolipoamide dehydrogenase {Azotobacter vinela	97.15
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	97.15
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	97.12
d1xdia2	118	Dihydrolipoamide dehydrogenase {Mycobacterium tube	97.11
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	97.11
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	97.02
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	97.0
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	97.0
d1dxla3	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	96.94
d1lvla3	123	Dihydrolipoamide dehydrogenase {Pseudomonas putida	96.92
d1ebda3	115	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.85
d1ojta3	128	Dihydrolipoamide dehydrogenase {Neisseria meningit	96.84
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.79
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	96.76
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	96.76
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	96.72
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	96.65
d1m6ia3	131	Apoptosis-inducing factor (AIF) {Human (Homo sapie	96.58
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.52
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	96.33
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	96.24
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	96.17
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	96.11
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	96.02
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	95.99
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	95.93
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	95.9
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	95.83
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	95.82
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	95.82
d1fcda2	141	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	95.81
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	95.81
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	95.72
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	95.68
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	95.61
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	95.61
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	95.57
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	95.56
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	95.48
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	95.41
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	95.3
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	95.28
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	95.25
d1onfa3	119	Glutathione reductase {Plasmodium falciparum [TaxI	95.09
d3grsa3	115	Glutathione reductase {Human (Homo sapiens) [TaxId	95.01
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	94.98
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	94.82
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	94.79
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	94.78
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	94.76
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	94.75
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	94.57
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	94.47
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	94.42
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	94.23
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	94.2
d1gesa3	115	Glutathione reductase {Escherichia coli [TaxId: 56	94.17
d1feca3	128	Trypanothione reductase {Crithidia fasciculata [Ta	94.13
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	94.1
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	94.07
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	94.06
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	93.72
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	93.62
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	93.58
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	93.53
d1h6va3	133	Mammalian thioredoxin reductase {Rat (Rattus norve	93.44
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	93.39
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	93.39
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	93.2
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	93.19
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	93.07
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	92.85
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	92.46
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	92.42
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	92.36
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	92.0
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	91.95
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	91.95
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	91.94
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	91.92
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	91.63
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	91.47
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	91.47
d1fcda2	141	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	91.46
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	91.32
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	91.01
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	90.98
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	90.91
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	90.89
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	90.85
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	90.79
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	90.75
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	90.34
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	90.2
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	89.88
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	89.62
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	89.31
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	89.3
d1mo9a3	140	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	89.29
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	89.22
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	89.1
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	88.83
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	88.68
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	88.47
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	88.11
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	88.02
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	88.01
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	87.96
d1gtea1	182	Dihydropyrimidine dehydrogenase, N-terminal domain	87.86
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	87.81
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	87.8
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	87.71
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	87.69
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	87.37
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	87.36
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	87.27
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	86.95
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	86.77
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	86.67
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	86.33
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	85.82
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	85.74
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	85.45
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	85.4
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	85.39
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	85.32
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	84.92
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	84.75
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	84.6
d1nhpa3	126	NADH peroxidase {Enterococcus faecalis [TaxId: 135	84.33
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	84.19
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	83.82
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	83.8
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	83.67
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	83.57
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	83.29
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	82.91
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	82.89
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	82.77
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	82.65
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	82.63
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	82.55
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	82.29
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	82.26
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	82.23
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	82.21
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	82.2
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	81.9
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	81.48
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	81.08
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	80.65
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	80.52
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	80.48
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	80.38
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	80.11

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=6.8e-25  Score=196.97  Aligned_cols=113  Identities=32%  Similarity=0.485  Sum_probs=94.7

Q ss_pred             HHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC-ChhhhhcCCccc--CCCEEeCCCCCCCCC
Q 011351          259 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT-VSPFERVGLNSS--VGGIQVDGQFRTRMP  335 (488)
Q Consensus       259 l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~-~~~~~~~gl~~~--~g~i~vd~~~~t~~~  335 (488)
                      +++.||+++++++|++|+.+ +.   .|.++||++++||.+|+|+|..|+ .++....++..+  .++|.||+++||+ |
T Consensus        93 ~~~~gI~~~~g~~V~~id~~-~~---~V~l~dG~~i~~d~lViAtG~~~~~~~l~~~~gl~~~~~~~~i~vd~~l~~~-~  167 (213)
T d1m6ia1          93 IENGGVAVLTGKKVVQLDVR-DN---MVKLNDGSQITYEKCLIATGGTEPNVELAKTGGLEIDSDFGGFRVNAELQAR-S  167 (213)
T ss_dssp             STTCEEEEEETCCEEEEEGG-GT---EEEETTSCEEEEEEEEECCCEEEECCTTHHHHTCCBCTTTCSEECCTTCEEE-T
T ss_pred             HHHCCeEEEeCCEEEEeecc-Cc---eeeeccceeeccceEEEeeeeecchhhhhhccchhhhhhhhhhhhhHhcCcC-C
Confidence            34678999999999999754 22   578999999999999999997654 456677777653  5789999999998 9


Q ss_pred             CEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 011351          336 GIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA  377 (488)
Q Consensus       336 ~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~  377 (488)
                      +|||+|||+.++....+. .++++|+.|+.||+.+|+||++.
T Consensus       168 ~VyA~GD~a~~~~~~~g~-~~i~~~~~A~~~gr~aa~ni~g~  208 (213)
T d1m6ia1         168 NIWVAGDAACFYDIKLGR-RRVEHHDHAVVSGRLAGENMTGA  208 (213)
T ss_dssp             TEEECGGGEEEEETTTEE-ECCCCHHHHHHHHHHHHHHHTSC
T ss_pred             ceEEeeeeeeeccccCCc-EEeeEhHHHHHHHHHHHHHhcCC
Confidence            999999999988766554 46789999999999999999974

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.90  E-value=7.9e-24  Score=185.69  Aligned_cols=164  Identities=24%  Similarity=0.348  Sum_probs=130.6

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHH----------HHHHHcCcEEEcCCeEEEEEe
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE----------QLYQQNGVKFVKGASIKNLEA  277 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~----------~~l~~~GV~v~~~~~v~~i~~  277 (488)
                      .+|+|||+|++|+|+|..|++.|.+++++.+.+..+.....+.+...+.          ..+...+|+++++.+++++..
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i~~   83 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFDP   83 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTTHHHHCCGGGSBCCGGGSTTCEEEETCCEEEEET
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCceEEEEEecccccchhhHHHhhhhhhhhhhhhHHHHHhhcCCeEEEEecccccccc
Confidence            4699999999999999999999988877766555443222222222221          223456899999999999974


Q ss_pred             CCCCcEEEEEeCCCcEEEcCEEEEeecCccCCh-----hhhhcCCcccCCCEEeCCCCCCCCCCEEEEceecccCCccCC
Q 011351          278 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS-----PFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYD  352 (488)
Q Consensus       278 ~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~-----~~~~~gl~~~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~  352 (488)
                      . ..   .+.+++|+++++|.+++|+|..|+..     +....++..+ ++|.||+++||+.|+|||+|||+..+....|
T Consensus        84 ~-~~---~~~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~gl~~~-~~I~vd~~~~ts~~~IyA~GD~a~~~~~~~g  158 (183)
T d1d7ya1          84 Q-AH---TVALSDGRTLPYGTLVLATGAAPRAVLANDALARAAGLACD-DGIFVDAYGRTTCPDVYALGDVTRQRNPLSG  158 (183)
T ss_dssp             T-TT---EEEETTSCEEECSEEEECCCEEECCEEECCHHHHHTTCCBS-SSEECCTTCBCSSTTEEECGGGEEEECTTTC
T ss_pred             c-cc---eeEecCCcEeeeeeEEEEEEEEcccccccccccceeeEeeC-CcEEeccceeccccccchhhhhhccceeeCC
Confidence            3 22   46789999999999999999999753     4556677665 6799999999999999999999999887778


Q ss_pred             cccccccHHHHHHHHHHHHHHHhc
Q 011351          353 RTARVEHVDHARQSAQHCIKALLS  376 (488)
Q Consensus       353 ~~~~~~~~~~A~~~g~~~a~~i~~  376 (488)
                      ...+.++|..|.+||+.+|+||+.
T Consensus       159 ~~~~~~~~~~A~~qg~~aa~nil~  182 (183)
T d1d7ya1         159 RFERIETWSNAQNQGIAVARHLVD  182 (183)
T ss_dssp             SEEECCCHHHHHHHHHHHHHHHHC
T ss_pred             ceechhHHHHHHHHHHHHHHHHcC
Confidence            777788999999999999999984

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.90  E-value=1.8e-23  Score=185.79  Aligned_cols=187  Identities=19%  Similarity=0.308  Sum_probs=142.7

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHH
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYK  131 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (488)
                      +||||||||++|+.+|..|++.+. +.+|+++++++...|..+.++. ++.........+           .....+.++
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~-~~~V~v~~~~~~~~~~~~~~~~-~l~~~~~~~~~~-----------~~~~~~~l~   67 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHP-DAEIQWYEKGDFISFLSAGMQL-YLEGKVKDVNSV-----------RYMTGEKME   67 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCT-TSEEEEEESSSSSSBCGGGHHH-HHTTSSCCGGGS-----------BSCCHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCC-CCeEEEEeCCCcccccccCcch-hhcccccchHHH-----------HHhhHHHHH
Confidence            379999999999999999999875 6789999999887776554432 222211111111           234567889


Q ss_pred             HCCCeEEeCCcEEEEeCCCcEEEeC---CCc--EEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhc
Q 011351          132 EKGIEMIYQDPVTSIDIEKQTLITN---SGK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK  206 (488)
Q Consensus       132 ~~~i~~~~~~~v~~id~~~~~v~~~---~g~--~i~yd~lVlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~  206 (488)
                      +.+++++++++|++++++++.+++.   +|+  .+.||.+|+|+|+.+...        .                    
T Consensus        68 ~~gi~v~~~~~V~~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~~~~~~--------~--------------------  119 (198)
T d1nhpa1          68 SRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFEL--------D--------------------  119 (198)
T ss_dssp             HTTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCC--------C--------------------
T ss_pred             HCCcEEEEeeceeeEeeccccceeeecccccccccccceeeEeecceeecc--------c--------------------
Confidence            9999999999999999998887653   343  578999999999765321        1                    


Q ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEE
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV  286 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v  286 (488)
                                                                                                      
T Consensus       120 --------------------------------------------------------------------------------  119 (198)
T d1nhpa1         120 --------------------------------------------------------------------------------  119 (198)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EeCCCcEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHH
Q 011351          287 KLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQS  366 (488)
Q Consensus       287 ~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~  366 (488)
                                       |..|++.+++......++|+|.||+++||+.|+|||+|||+..+....+....++++..|.++
T Consensus       120 -----------------g~~~~~~~~~~~~~~~~~G~i~vd~~~~T~~~~IyA~GD~a~~~~~~~~~~~~~~~a~~A~~~  182 (198)
T d1nhpa1         120 -----------------GVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARKQ  182 (198)
T ss_dssp             -----------------CEEESCGGGTTTSCBCTTSCBCCCTTCBCSSTTEEECGGGSCEEEGGGTEEECCCCHHHHHHH
T ss_pred             -----------------ccccccccccccceeccCCceecCCcccccccceEEecceeecccccCCCcccccHHHHHHHH
Confidence                             556676666654333457889999999999999999999999877666666667788899999


Q ss_pred             HHHHHHHHhc
Q 011351          367 AQHCIKALLS  376 (488)
Q Consensus       367 g~~~a~~i~~  376 (488)
                      |+.+|+||.+
T Consensus       183 g~~aa~ni~~  192 (198)
T d1nhpa1         183 GRFAVKNLEE  192 (198)
T ss_dssp             HHHHHHTSSS
T ss_pred             HHHHHHhhCC
Confidence            9999999875

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.87  E-value=1.7e-21  Score=157.04  Aligned_cols=120  Identities=32%  Similarity=0.529  Sum_probs=111.8

Q ss_pred             CCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHH
Q 011351          178 PEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQ  257 (488)
Q Consensus       178 ~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~  257 (488)
                      |++||.+.+ +++++++.|++++.+.+..+++++|||+|++|+|+|..|+++|.+|+++++.++++++.+++++++.+.+
T Consensus         2 P~ipG~~~~-v~~lrtl~Da~~l~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~   80 (121)
T d1d7ya2           2 PTLQGATMP-VHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVAR   80 (121)
T ss_dssp             GGGTTCSSC-EEECCSHHHHHHHHHHCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHH
T ss_pred             ccCCCCCCC-EEEeCCHHHHHHHHHhhhcCCeEEEECcchhHHHHHHHhhcccceEEEEeeccccccccCCHHHHHHHHH
Confidence            667787655 9999999999999999999999999999999999999999999999999999999998899999999999


Q ss_pred             HHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeec
Q 011351          258 LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG  304 (488)
Q Consensus       258 ~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G  304 (488)
                      .++++||++++++.++++..+      .+.++||++++||.||+|+|
T Consensus        81 ~l~~~GV~i~~~~~v~~~~~~------~v~l~dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2          81 YHAAQGVDLRFERSVTGSVDG------VVLLDDGTRIAADMVVVGIG  121 (121)
T ss_dssp             HHHTTTCEEEESCCEEEEETT------EEEETTSCEEECSEEEECSC
T ss_pred             HHHHCCcEEEeCCEEEEEeCC------EEEECCCCEEECCEEEEeeC
Confidence            999999999999999998742      57899999999999999998

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.87  E-value=1.1e-21  Score=172.12  Aligned_cols=166  Identities=27%  Similarity=0.431  Sum_probs=132.6

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccccc--------------CHHHHHHHHHHHHHcCcEEEcCCe
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLF--------------TPSLAQRYEQLYQQNGVKFVKGAS  271 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~--------------~~~~~~~~~~~l~~~GV~v~~~~~  271 (488)
                      ..++|+|||+|++|+|+|..|++++.+++++.+.+.......              ...............++.+..+..
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQ   81 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccchhhhHHHHHHHHhhhhhhhhhhhhhhhhcccceeeeccce
Confidence            367999999999999999999999999888766654321111              111112234556777888888888


Q ss_pred             EEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCcc---CChhhhhcCCcccCCCEEeCCCCCCCCCCEEEEceecccCC
Q 011351          272 IKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP---TVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPL  348 (488)
Q Consensus       272 v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p---~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~  348 (488)
                      +..+... ..   .+...++.++++|.+++++|.+|   +..+++..++..+ +++.||+++||+.|+|||+|||+..+.
T Consensus        82 ~~~~~~~-~~---~v~~~~~~~i~~d~~i~~~G~~~~~~~~~~~~~~~~~~~-~~i~Vd~~~~ts~~~vya~GD~~~~~~  156 (185)
T d1q1ra1          82 VTAINRD-RQ---QVILSDGRALDYDRLVLATGGRPLIPNCELASAAGLQVD-NGIVINEHMQTSDPLIMAVGDCARFHS  156 (185)
T ss_dssp             EEEEETT-TT---EEEETTSCEEECSEEEECCCEEEEEECCHHHHHTTCCBS-SSEECCTTSBCSSTTEEECGGGEEEEE
T ss_pred             eeeeccc-cc---EEEeeceeEEEeeeeeeeeecccCCCCchhHHhCCcccc-CccccCCccccchhhhhcchhhhcccc
Confidence            8888743 22   57788899999999999999876   5566778787765 789999999999999999999999988


Q ss_pred             ccCCcccccccHHHHHHHHHHHHHHHhc
Q 011351          349 KMYDRTARVEHVDHARQSAQHCIKALLS  376 (488)
Q Consensus       349 ~~~~~~~~~~~~~~A~~~g~~~a~~i~~  376 (488)
                      ...+...++++|+.|.+||+.+|+||+|
T Consensus       157 ~~~~~~~~~~~a~~A~~~g~~aa~~i~G  184 (185)
T d1q1ra1         157 QLYDRWVRIESVPNALEQARKIAAILCG  184 (185)
T ss_dssp             TTTTEEEECCSHHHHHHHHHHHHHHHTT
T ss_pred             ccCCcccchhhHHHHHHHHHHHHHHccC
Confidence            8888877788999999999999999986

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.87  E-value=1.4e-21  Score=168.35  Aligned_cols=152  Identities=26%  Similarity=0.391  Sum_probs=121.4

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHH-------------HHHHHHHHHcCcEEEcCCeEEEE
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLA-------------QRYEQLYQQNGVKFVKGASIKNL  275 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~-------------~~~~~~l~~~GV~v~~~~~v~~i  275 (488)
                      ||+|||+|++|+|+|..|++ +.+|+++++.+.+..  ..+.+.             ....+.+++.++++++++.++.+
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i   78 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYY--SKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKLI   78 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCCC--CSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEEE
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEeccccccc--cccchhhhhhhhhhhhhhhHHHHHHHHhccceeeeecccccc
Confidence            79999999999999999965 679999998764332  122221             22245678889999999999999


Q ss_pred             EeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeCCCCCCCCCCEEEEceecccCCccCCccc
Q 011351          276 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA  355 (488)
Q Consensus       276 ~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~  355 (488)
                      +.+  .+   +.+.+++++++|.+++|+|..|+ .+++..++..+ ++|.||+++||+.|+|||+|||+..+...     
T Consensus        79 ~~~--~~---~~~~~~~~i~~D~li~a~G~~~~-~~~~~~gl~~~-~~i~v~~~~~t~~~~i~aiGD~~~~~~~~-----  146 (167)
T d1xhca1          79 DRG--RK---VVITEKGEVPYDTLVLATGAPNV-DLARRSGIHTG-RGILIDDNFRTSAKDVYAIGDCAEYSGII-----  146 (167)
T ss_dssp             ETT--TT---EEEESSCEEECSEEEECCCEECC-HHHHHTTCCBS-SSEECCTTSBCSSTTEEECGGGEEBTTBC-----
T ss_pred             ccc--cc---cccccccccccceeEEEEEecCC-chhhhcCceeC-CceeeccccEecCCCeEEeeecccCCCeE-----
Confidence            732  22   45567778999999999999775 78889999886 46999999999999999999999876543     


Q ss_pred             ccccHHHHHHHHHHHHHHHhc
Q 011351          356 RVEHVDHARQSAQHCIKALLS  376 (488)
Q Consensus       356 ~~~~~~~A~~~g~~~a~~i~~  376 (488)
                       +..+..|.+||+.+|++|+|
T Consensus       147 -~~~~~~a~~~a~~~a~~i~G  166 (167)
T d1xhca1         147 -AGTAKAAMEQARVLADILKG  166 (167)
T ss_dssp             -CCSHHHHHHHHHHHHHHHTT
T ss_pred             -EChHHHHHHHHHHHHHHcCC
Confidence             23667799999999999986

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.84  E-value=1.5e-20  Score=154.28  Aligned_cols=120  Identities=33%  Similarity=0.617  Sum_probs=112.5

Q ss_pred             CCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCc
Q 011351          185 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGV  264 (488)
Q Consensus       185 ~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV  264 (488)
                      .+++++++++.|++.+.+.+..+++++|||+|++|+|+|..|++.|.+|+++++.++++++.+++.+.+.+++.++++||
T Consensus        13 ~~~v~~lr~~~d~~~l~~~~~~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~~~~~~~~~~~~~~~~~GV   92 (133)
T d1q1ra2          13 ANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGV   92 (133)
T ss_dssp             STTEEESSSHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTC
T ss_pred             cCCeeEeCCHHHHHHHHHhhccCCEEEEECCchHHHHHHHHHHhhCcceeeeeecccccccccchhhhhhhhhccccccc
Confidence            56899999999999999988889999999999999999999999999999999999999988999999999999999999


Q ss_pred             EEEcCCeEEEEEeCC-CCcEEEEEeCCCcEEEcCEEEEeec
Q 011351          265 KFVKGASIKNLEAGS-DGRVAAVKLEDGSTIDADTIVIGIG  304 (488)
Q Consensus       265 ~v~~~~~v~~i~~~~-~~~v~~v~l~~g~~i~~D~vi~a~G  304 (488)
                      ++++++++++++... ++.+..+.++||+++++|.||+|+|
T Consensus        93 ~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2          93 DIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             EEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred             EEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence            999999999998653 4567789999999999999999998

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.80  E-value=3.6e-19  Score=143.94  Aligned_cols=121  Identities=26%  Similarity=0.363  Sum_probs=108.4

Q ss_pred             CCCCCCCcEEEecCHHHHHHHHHhhh--cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHH
Q 011351          180 KIGGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQ  257 (488)
Q Consensus       180 ~~g~~~~gv~~~~~~~~~~~~~~~~~--~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~  257 (488)
                      +||.+.+++++++++.++.++.+...  .+++++|||+|++|+|+|..|+++|.+||++++.++++++.+++++++.+++
T Consensus         1 IPG~d~~~v~~~~~~~da~~i~~~~~~~~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~~d~~~~~~~~~   80 (123)
T d1nhpa2           1 IPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTE   80 (123)
T ss_dssp             STTTTSBSEECCCHHHHHHHHHHHHTCTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHH
T ss_pred             CcCCCCCCeEEeCCHHHHHHHHHHhhccCCCEEEEECChHHHHHHHHHhhccceEEEEEEecCcccccccchhhHHHHHH
Confidence            36778899999999999999988765  4689999999999999999999999999999999999998899999999999


Q ss_pred             HHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEee
Q 011351          258 LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGI  303 (488)
Q Consensus       258 ~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~  303 (488)
                      .++++||++++++.+++++.  ++.+..+ +.||++++||.||+|+
T Consensus        81 ~l~~~gv~~~~~~~v~~i~~--~~~~~~v-~~dg~~i~~D~vi~aI  123 (123)
T d1nhpa2          81 EMEANNITIATGETVERYEG--DGRVQKV-VTDKNAYDADLVVVAV  123 (123)
T ss_dssp             HHHTTTEEEEESCCEEEEEC--SSBCCEE-EESSCEEECSEEEECS
T ss_pred             HhhcCCeEEEeCceEEEEEc--CCCEEEE-EeCCCEEECCEEEEEC
Confidence            99999999999999999984  3444334 6788899999999984

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=3.9e-18  Score=136.32  Aligned_cols=106  Identities=25%  Similarity=0.448  Sum_probs=95.6

Q ss_pred             HHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEE
Q 011351          197 ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLE  276 (488)
Q Consensus       197 ~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~  276 (488)
                      ++.+.+..+.+++++|||+|++|+|+|..|.++|.+||++++.+++++. +++++++++.+.++++||++++++.++++.
T Consensus        11 ~~~~~~l~~~p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~-~d~~~~~~~~~~l~~~GV~~~~~~~v~~i~   89 (116)
T d1gesa2          11 SDGFFALPALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS-FDPMISETLVEVMNAEGPQLHTNAIPKAVV   89 (116)
T ss_dssp             HHHHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHHSCEEECSCCEEEEE
T ss_pred             HHHHhChhhCCCEEEEECCChhhHHHHHHhhccccEEEEEeecchhhhh-cchhhHHHHHHHHHHCCCEEEeCCEEEEEE
Confidence            4445555567899999999999999999999999999999999999975 899999999999999999999999999998


Q ss_pred             eCCCCcEEEEEeCCCcEEEcCEEEEeec
Q 011351          277 AGSDGRVAAVKLEDGSTIDADTIVIGIG  304 (488)
Q Consensus       277 ~~~~~~v~~v~l~~g~~i~~D~vi~a~G  304 (488)
                      .++++.+ .+.+++|+++++|.||+|+|
T Consensus        90 ~~~~~~~-~v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          90 KNTDGSL-TLELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             ECTTSCE-EEEETTSCEEEESEEEECSC
T ss_pred             EcCCcEE-EEEECCCCEEEcCEEEEecC
Confidence            7766655 58899999999999999998

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=3.9e-18  Score=140.75  Aligned_cols=118  Identities=24%  Similarity=0.480  Sum_probs=107.6

Q ss_pred             CcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHH----hCCCcEEEEecCCcCcccccCHHHHHHHHHHHHH
Q 011351          186 PGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAV----GWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ  261 (488)
Q Consensus       186 ~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~----~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~  261 (488)
                      +.+..++++.|+.++.+..+..++++|||||++|+|+|..|.    +.|.+|+++++.++++++.+++++++.+.+.+++
T Consensus        16 ~~~~~~r~~~d~~~l~~~~~~~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~~~~~~~~~~~~~l~~   95 (137)
T d1m6ia2          16 SRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRR   95 (137)
T ss_dssp             HTEEECCSHHHHHHHHHHHHHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHT
T ss_pred             CcEEEEcCHHHHHHHHHHhhcCCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcccCCHHHHHHHHHHHHh
Confidence            467889999999999998889999999999999999999995    4688999999999999988999999999999999


Q ss_pred             cCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecC
Q 011351          262 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  305 (488)
Q Consensus       262 ~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~  305 (488)
                      +||++++++.|++++.+ ++.+ .+.++||++++||.||+|+|.
T Consensus        96 ~GV~~~~~~~V~~i~~~-~~~~-~v~l~~G~~i~aD~Vi~A~Gv  137 (137)
T d1m6ia2          96 EGVKVMPNAIVQSVGVS-SGKL-LIKLKDGRKVETDHIVAAVGL  137 (137)
T ss_dssp             TTCEEECSCCEEEEEEE-TTEE-EEEETTSCEEEESEEEECCCE
T ss_pred             CCcEEEeCCEEEEEEec-CCEE-EEEECCCCEEECCEEEEeecC
Confidence            99999999999999864 4443 689999999999999999994

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.76  E-value=2.9e-18  Score=138.48  Aligned_cols=118  Identities=23%  Similarity=0.422  Sum_probs=105.7

Q ss_pred             CCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHH
Q 011351          177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE  256 (488)
Q Consensus       177 ~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~  256 (488)
                      .|++||  .+.+++++++.+++++.+.+..+++++|||||++|+|+|..|.++|.+||++++.+.+++  +++++.+.+.
T Consensus         4 ~p~ipG--~e~~~t~~~~~d~~~l~~~~~~~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~--~d~~~~~~~~   79 (122)
T d1xhca2           4 EPQIKG--KEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG--LDEELSNMIK   79 (122)
T ss_dssp             CCCSBT--GGGEECCCSHHHHHHHHHHHHHHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT--CCHHHHHHHH
T ss_pred             CcCCCC--ccceEccCCHHHHHHHHHHhhcCCcEEEECCcHHHHHHHHHhhcccceEEEEeccccccC--CCHHHHHHHH
Confidence            356677  357889999999999999888899999999999999999999999999999999999885  7999999999


Q ss_pred             HHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecC
Q 011351          257 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  305 (488)
Q Consensus       257 ~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~  305 (488)
                      +.|+++||++++++++++++.+      .+ +.+++++++|.||+|+|.
T Consensus        80 ~~l~~~GV~~~~~~~v~~~~~~------~v-~~~~~~i~~D~vi~a~Gv  121 (122)
T d1xhca2          80 DMLEETGVKFFLNSELLEANEE------GV-LTNSGFIEGKVKICAIGI  121 (122)
T ss_dssp             HHHHHTTEEEECSCCEEEECSS------EE-EETTEEEECSCEEEECCE
T ss_pred             HHHHHCCcEEEeCCEEEEEeCC------EE-EeCCCEEECCEEEEEEEe
Confidence            9999999999999999999632      23 457788999999999995

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.73  E-value=4.7e-17  Score=129.80  Aligned_cols=104  Identities=24%  Similarity=0.439  Sum_probs=91.4

Q ss_pred             HHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEE
Q 011351          197 ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLE  276 (488)
Q Consensus       197 ~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~  276 (488)
                      ++.+.+ ++.+++++|||+|++|+|+|..|+++|.+||++++.+++++ .+++++++.+++.++++||++++++++++++
T Consensus        13 s~~~~~-l~~p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il~-~~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~   90 (117)
T d1onfa2          13 SDEFFN-IKESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILR-KFDESVINVLENDMKKNNINIVTFADVVEIK   90 (117)
T ss_dssp             HHHHTT-CCCCSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCT-TSCHHHHHHHHHHHHHTTCEEECSCCEEEEE
T ss_pred             hhHHhc-cCCCCEEEEECCchHHHHHHHHHHhccccceeeehhccccc-cccHHHHHHHHHHHHhCCCEEEECCEEEEEE
Confidence            334433 34589999999999999999999999999999999999996 4899999999999999999999999999998


Q ss_pred             eCCCCcEEEEEeCCCcEEE-cCEEEEee
Q 011351          277 AGSDGRVAAVKLEDGSTID-ADTIVIGI  303 (488)
Q Consensus       277 ~~~~~~v~~v~l~~g~~i~-~D~vi~a~  303 (488)
                      ..+++.+ .+.+++|+.++ +|.|++|+
T Consensus        91 ~~~~~~~-~v~~~~G~~~~~~D~Vi~AI  117 (117)
T d1onfa2          91 KVSDKNL-SIHLSDGRIYEHFDHVIYCV  117 (117)
T ss_dssp             ESSTTCE-EEEETTSCEEEEESEEEECC
T ss_pred             EcCCCeE-EEEECCCCEEEeCCEEEEeC
Confidence            7766655 68999998874 79999984

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.72  E-value=3.6e-17  Score=131.08  Aligned_cols=107  Identities=22%  Similarity=0.427  Sum_probs=93.2

Q ss_pred             HHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhC---CCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEE
Q 011351          197 ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIK  273 (488)
Q Consensus       197 ~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~---g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~  273 (488)
                      ++.+.+....+++++|||+|++|+|+|..+.++   |.+|+++++.+++++. +++++++.+++.++++||++++++.++
T Consensus         8 s~~~~~l~~~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~~-~d~~~~~~~~~~l~~~GI~v~~~~~v~   86 (117)
T d1feca2           8 SNEAFYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRG-FDSELRKQLTEQLRANGINVRTHENPA   86 (117)
T ss_dssp             HHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHHTTEEEEETCCEE
T ss_pred             hHHhhCccccCCeEEEECCChHHHHHHHHhHhhcccccccceeccccccccc-ccchhhHHHHHHHhhCcEEEEcCCEEE
Confidence            444444445689999999999999999877654   7899999999999974 899999999999999999999999999


Q ss_pred             EEEeCCCCcEEEEEeCCCcEEEcCEEEEeecC
Q 011351          274 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  305 (488)
Q Consensus       274 ~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~  305 (488)
                      +++.++++. ..+.+++|++++||.|++|+|+
T Consensus        87 ~i~~~~~g~-~~v~~~~g~~i~~D~Vi~a~GR  117 (117)
T d1feca2          87 KVTKNADGT-RHVVFESGAEADYDVVMLAIGR  117 (117)
T ss_dssp             EEEECTTSC-EEEEETTSCEEEESEEEECSCE
T ss_pred             EEEECCCCE-EEEEECCCCEEEcCEEEEecCC
Confidence            998765554 4789999999999999999995

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.71  E-value=5.6e-17  Score=149.75  Aligned_cols=152  Identities=19%  Similarity=0.298  Sum_probs=107.2

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc-------------------------------------ccCH-H
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-------------------------------------LFTP-S  250 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~-------------------------------------~~~~-~  250 (488)
                      .++|||+|+.|+++|..++++|.+|+++++.+.+...                                     .... .
T Consensus        44 DvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~c~n~GcvP~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (261)
T d1mo9a1          44 DAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVGIKE  123 (261)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTTCCCCHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccccccccccccchHHHHhhHHhHHHHHHhhhhccccccccccccHHH
Confidence            5999999999999999999999999999987655210                                     0000 0


Q ss_pred             HHHH------------HHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChh-------
Q 011351          251 LAQR------------YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP-------  311 (488)
Q Consensus       251 ~~~~------------~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~-------  311 (488)
                      ..+.            ..+.+...++....+....-+.   ..   .+. .+|++++||.|++|+|.+|++..       
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d---~~---~v~-~~g~~i~ad~viiAtG~~P~~~~i~~~~~~  196 (261)
T d1mo9a1         124 VVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVID---NH---TVE-AAGKVFKAKNLILAVGAGPGTLDVPEQPRS  196 (261)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEE---TT---EEE-ETTEEEEBSCEEECCCEECCCCCSTCEECC
T ss_pred             HHHHHHHHHHhhhhhHHHHhhhcccceeEeeeEEEEee---ec---ccc-cccceEeeeeeeeccCCCCCcCcccccccc
Confidence            0000            1112233344443333322222   11   122 46788999999999999998653       


Q ss_pred             ---hhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 011351          312 ---FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA  377 (488)
Q Consensus       312 ---~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~  377 (488)
                         .+.+|++.+ +|.|.||+++||++|+|||+|||+..|.          .+..|..+|+.+|.||+|.
T Consensus       197 ~~l~~~~Gl~~~~~G~I~Vn~~~~Ts~~~IyA~GDv~~~~~----------l~~~A~~~G~~aa~~i~G~  256 (261)
T d1mo9a1         197 AELAKILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGGPM----------EMFKARKSGCYAARNVMGE  256 (261)
T ss_dssp             HHHHHHHTCCBCTTSCBCCCTTSBCSSTTEEECGGGGCSSC----------SHHHHHHHHHHHHHHHTTC
T ss_pred             cccccceeeeeccCCEEEeCCCcccCCCCEEEEEEeCCCcc----------cHHHHHHHHHHHHHHHCCC
Confidence               345678875 6779999999999999999999987654          3455999999999999974

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.70  E-value=6.5e-17  Score=145.52  Aligned_cols=155  Identities=28%  Similarity=0.353  Sum_probs=112.7

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcC------------------------------c----ccccC------
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL------------------------------L----QRLFT------  248 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~------------------------------l----~~~~~------  248 (488)
                      .++|||+|+.|+++|..+++.|.+|+++++...-                              .    ...+.      
T Consensus         5 DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (223)
T d1ebda1           5 ETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDFAKVQE   84 (223)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEecCCCCcceeccccccccccccccchhhhhhhhhhhcccchhheeeHHHHhh
Confidence            5899999999999999999999999999865310                              0    00001      


Q ss_pred             ------HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEee--------cCccCChh--h
Q 011351          249 ------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGI--------GAKPTVSP--F  312 (488)
Q Consensus       249 ------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~--------G~~p~~~~--~  312 (488)
                            ..+...+...++..||+++.+.  ..+..  ..........++.++.+|.+|+++        |.+|+++.  +
T Consensus        85 ~~~~~v~~l~~~~~~~~~~~~V~~i~G~--a~f~~--~~~~~v~~~~~~~~~~~~~iiIa~g~~p~~~~G~~p~~~~l~l  160 (223)
T d1ebda1          85 WKASVVKKLTGGVEGLLKGNKVEIVKGE--AYFVD--ANTVRVVNGDSAQTYTFKNAIIATGSRPIELVGRRPNTDELGL  160 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCEEEESE--EEEEE--TTEEEEEETTEEEEEECSEEEECCCEEECCBSCEEESCSSSST
T ss_pred             HHHHHHHHHHhhHHHhhhccceeeeccE--EEEcc--CcccceeccccceEEecccEEEEcCCCccccccceecCCCCCh
Confidence                  0122334455677899998774  23332  222222233344578999999985        88888875  5


Q ss_pred             hhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 011351          313 ERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA  377 (488)
Q Consensus       313 ~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~  377 (488)
                      +++|++.+ +|+|.||+++|||.|+|||+|||+..+.          ....|..+|+.+|++|++.
T Consensus       161 ~~~gv~~~~~G~I~vd~~~~T~~~gvyA~GDv~~~~~----------~~~~A~~~g~~aa~~i~g~  216 (223)
T d1ebda1         161 EQIGIKMTNRGLIEVDQQCRTSVPNIFAIGDIVPGPA----------LAHKASYEGKVAAEAIAGH  216 (223)
T ss_dssp             TTTTCCBCTTSCBCCCTTCBCSSTTEEECGGGSSSCC----------CHHHHHHHHHHHHHHHTSC
T ss_pred             HhcCceECCCCCEeECCCCCCCCCCEEEEeccCCCcc----------cHHHHHHHHHHHHHHHcCC
Confidence            78899876 6789999999999999999999997653          3445899999999999974

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=1.7e-16  Score=127.62  Aligned_cols=105  Identities=17%  Similarity=0.365  Sum_probs=91.8

Q ss_pred             HHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEE
Q 011351          197 ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLE  276 (488)
Q Consensus       197 ~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~  276 (488)
                      ++.+.+....+++++|||+|++|+|+|..|.++|.+||++++.+++++. +++++++.+++.++++||++++++++++++
T Consensus        13 s~~~~~l~~~p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~-~d~ei~~~l~~~l~~~GV~i~~~~~v~~v~   91 (122)
T d1v59a2          13 STGALSLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS-MDGEVAKATQKFLKKQGLDFKLSTKVISAK   91 (122)
T ss_dssp             HHHHTTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS-SCHHHHHHHHHHHHHTTCEEECSEEEEEEE
T ss_pred             hHHhhCcccCCCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccchh-hhhhhHHHHHHHHHhccceEEeCCEEEEEE
Confidence            4455554557899999999999999999999999999999999999985 899999999999999999999999999999


Q ss_pred             eCCCCcEEEEEeCCC-----cEEEcCEEEEe
Q 011351          277 AGSDGRVAAVKLEDG-----STIDADTIVIG  302 (488)
Q Consensus       277 ~~~~~~v~~v~l~~g-----~~i~~D~vi~a  302 (488)
                      ..+++....+.+.++     +++++|.|++|
T Consensus        92 ~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          92 RNDDKNVVEIVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             EETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             EeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence            877776666666554     37999999986

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.68  E-value=1.4e-16  Score=128.58  Aligned_cols=116  Identities=22%  Similarity=0.327  Sum_probs=95.8

Q ss_pred             CCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcC
Q 011351          184 YLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNG  263 (488)
Q Consensus       184 ~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~G  263 (488)
                      +.+|++...++.+.  +  ....+++++|||+|++|+|+|..|+.+|.+|+++++.+++++ .+++++++.+++.++++|
T Consensus         3 ~~~gv~~~~~~~~~--l--~~~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l~-~~d~~~~~~~~~~l~~~g   77 (121)
T d1mo9a2           3 NAKGVFDHATLVEE--L--DYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKL-IKDNETRAYVLDRMKEQG   77 (121)
T ss_dssp             TSBTEEEHHHHHHH--C--CSCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT-CCSHHHHHHHHHHHHHTT
T ss_pred             CCCCEEeHHHHHHH--H--hhCCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhhc-ccccchhhhhhhhhhccc
Confidence            46777765432221  0  123579999999999999999999999999999999999996 589999999999999999


Q ss_pred             cEEEcCCeEEEEEeCCCCcEEEEE---eCCCcEEEcCEEEEeec
Q 011351          264 VKFVKGASIKNLEAGSDGRVAAVK---LEDGSTIDADTIVIGIG  304 (488)
Q Consensus       264 V~v~~~~~v~~i~~~~~~~v~~v~---l~~g~~i~~D~vi~a~G  304 (488)
                      |++++++++++++.++++.+..+.   ..++++++||.||+|+|
T Consensus        78 I~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          78 MEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             CEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred             cEEEcCCEEEEEEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence            999999999999987777654443   34567899999999998

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.68  E-value=2.6e-16  Score=125.77  Aligned_cols=105  Identities=24%  Similarity=0.453  Sum_probs=91.6

Q ss_pred             HHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCC---CcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEE
Q 011351          197 ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWK---LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIK  273 (488)
Q Consensus       197 ~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g---~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~  273 (488)
                      ++.+....+.+++++|||+|++|+|+|..+..++   .+||++++.+++++ .+++++++.+++.++++||+++++++++
T Consensus        10 ~~~~~~l~~~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~-~~d~~~~~~l~~~l~~~GV~v~~~~~v~   88 (117)
T d1aoga2          10 SNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILR-GFDHTLREELTKQLTANGIQILTKENPA   88 (117)
T ss_dssp             HHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSST-TSCHHHHHHHHHHHHHTTCEEEESCCEE
T ss_pred             HHHHhCchhcCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhc-ccchHHHHHHHHHHHhcCcEEEcCCEEE
Confidence            4555555567899999999999999998887665   46999999999997 4899999999999999999999999999


Q ss_pred             EEEeCCCCcEEEEEeCCCcEEEcCEEEEee
Q 011351          274 NLEAGSDGRVAAVKLEDGSTIDADTIVIGI  303 (488)
Q Consensus       274 ~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~  303 (488)
                      +++..+++.+ .+.+++|++++||.||+|+
T Consensus        89 ~ie~~~~~~~-~v~~~~G~~i~~D~Vi~AI  117 (117)
T d1aoga2          89 KVELNADGSK-SVTFESGKKMDFDLVMMAI  117 (117)
T ss_dssp             EEEECTTSCE-EEEETTSCEEEESEEEECS
T ss_pred             EEEEcCCCeE-EEEECCCcEEEeCEEEEeC
Confidence            9987666665 5899999999999999984

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.68  E-value=1.6e-16  Score=142.82  Aligned_cols=156  Identities=26%  Similarity=0.447  Sum_probs=112.6

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc------------------------------------ccC----
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------LFT----  248 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~------------------------------------~~~----  248 (488)
                      .++|||+|+.|+++|..+++.|.+|+++++.+.+-..                                    ...    
T Consensus         5 DvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~~   84 (221)
T d1dxla1           5 DVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEIDLAAM   84 (221)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEECHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCCeeecchhhhhhhhhHhHHHHHHHhhhhhhcCeecccceecHHHH
Confidence            5899999999999999999999999999987654110                                    000    


Q ss_pred             --------HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeec-----CccCChh--hh
Q 011351          249 --------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG-----AKPTVSP--FE  313 (488)
Q Consensus       249 --------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G-----~~p~~~~--~~  313 (488)
                              ..+...+...++..+|+++....  .+... ..........++..+.+|.||+|||     +.|+++.  ++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~~-~~~~~~~~~~~~~~~~a~~VIiATGs~~~gr~p~~~~l~l~  161 (221)
T d1dxla1          85 MGQKDKAVSNLTRGIEGLFKKNKVTYVKGYG--KFVSP-SEISVDTIEGENTVVKGKHIIIATGSDVKGRTPFTSGLNLD  161 (221)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCEEEESCE--EEEET-TEEEECCSSSCCEEEECSEEEECCCEEECCEEECCTTSCCT
T ss_pred             HHHHHHHHHHHhhHHHHhhhcCCeEEEEecc--ccccc-cccccccccccccccccceEEEeECCCccCccccCCCCChH
Confidence                    11233445566778898876542  22211 1111111223445789999999999     5677764  57


Q ss_pred             hcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 011351          314 RVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA  377 (488)
Q Consensus       314 ~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~  377 (488)
                      ++|++.+ +|+|.||++++|++|+|||+|||+..|.          .+..|..+|+.+|++|++.
T Consensus       162 ~~gv~~~~~G~i~vd~~~~T~v~gi~A~GDv~~g~~----------l~~~A~~~g~~aa~~i~g~  216 (221)
T d1dxla1         162 KIGVETDKLGRILVNERFSTNVSGVYAIGDVIPGPM----------LAHKAEEDGVACVEYLAGK  216 (221)
T ss_dssp             TTTCCBCSSSCBCCCTTCBCSSTTEEECSTTSSSCC----------CHHHHHHHHHHHHHHHTTS
T ss_pred             hcCceEcCCCcEEeCCCcccCCCCEEEEeccCCCcc----------cHHHHHHHHHHHHHHHcCC
Confidence            8899875 6789999999999999999999997653          4456889999999999864

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.67  E-value=6.4e-17  Score=130.43  Aligned_cols=109  Identities=16%  Similarity=0.251  Sum_probs=93.3

Q ss_pred             HHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEE
Q 011351          196 DADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNL  275 (488)
Q Consensus       196 ~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i  275 (488)
                      +++.+.+....+++++|||+|++|+|+|..++++|.+||++++.+++++. +++++.+.+.+.++++||++++++.++++
T Consensus        15 ts~~~l~l~~~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~-~d~~~~~~l~~~l~~~gv~~~~~~~v~~v   93 (125)
T d1ojta2          15 DSSGALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG-ADRDLVKVWQKQNEYRFDNIMVNTKTVAV   93 (125)
T ss_dssp             CHHHHTTCCCCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHHHHHHHGGGEEEEECSCEEEEE
T ss_pred             cHHHhhCccccCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecccccc-chhhHHHHHHHHHHHcCcccccCcEEEEE
Confidence            35555555567899999999999999999999999999999999999985 79999999999999999999999999999


Q ss_pred             EeCCCCcEEEEEeCCC--cEEEcCEEEEeecC
Q 011351          276 EAGSDGRVAAVKLEDG--STIDADTIVIGIGA  305 (488)
Q Consensus       276 ~~~~~~~v~~v~l~~g--~~i~~D~vi~a~G~  305 (488)
                      +..+++....+...+|  +++++|.|++|+|+
T Consensus        94 ~~~~~g~~v~~~~~~g~~~~i~~D~vl~A~GR  125 (125)
T d1ojta2          94 EPKEDGVYVTFEGANAPKEPQRYDAVLVAAGR  125 (125)
T ss_dssp             EEETTEEEEEEESSSCCSSCEEESCEEECCCE
T ss_pred             EEcCCcEEEEEEeCCCCeEEEEcCEEEEecCC
Confidence            9765554333444444  47999999999995

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.67  E-value=2.9e-16  Score=125.75  Aligned_cols=105  Identities=19%  Similarity=0.366  Sum_probs=90.9

Q ss_pred             HHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEE
Q 011351          197 ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLE  276 (488)
Q Consensus       197 ~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~  276 (488)
                      ++.+.+....+++++|||+|++|+|+|..|+++|.+|+++++.+++++. +++++.+.+++.+++.||++++++++++++
T Consensus        12 s~~~l~l~~~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~~-~d~ei~~~l~~~l~~~Gv~i~~~~~v~~i~   90 (119)
T d3lada2          12 STGALDFQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPA-VDEQVAKEAQKILTKQGLKILLGARVTGTE   90 (119)
T ss_dssp             HHHHTSCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHHTTEEEEETCEEEEEE
T ss_pred             hhHhhCcccCCCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCCc-ccchhHHHHHHHHHhcCceeecCcEEEEEE
Confidence            5555555567899999999999999999999999999999999999985 899999999999999999999999999999


Q ss_pred             eCCCCcEEEEEeCCC---cEEEcCEEEEeec
Q 011351          277 AGSDGRVAAVKLEDG---STIDADTIVIGIG  304 (488)
Q Consensus       277 ~~~~~~v~~v~l~~g---~~i~~D~vi~a~G  304 (488)
                      ..+++.  .+.+.++   +++.||.|++|+|
T Consensus        91 ~~~~~v--~v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          91 VKNKQV--TVKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             ECSSCE--EEEEESSSEEEEEEESEEEECSC
T ss_pred             EeCCEE--EEEEEECCCCEEEECCEEEEeeC
Confidence            765442  3444433   5799999999998

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.66  E-value=3.1e-20  Score=168.90  Aligned_cols=195  Identities=12%  Similarity=0.116  Sum_probs=112.4

Q ss_pred             eccccCCCCcccceeccccccccccccccccccccCCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC
Q 011351           13 GLSLWCPQSPSLHRIRHSSAKNFQRRGFVVAYSSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE   92 (488)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~   92 (488)
                      |..+.|.+|+.++++......+.        ..+.+...++|+|||||+|||+||..|+++|+   +|+|+|+++.....
T Consensus        19 ~~~~~c~~n~~~~~e~~~~~~p~--------~~~~~~~~k~VvIIGaGpAGl~aA~~l~~~G~---~v~l~E~~~~~GG~   87 (233)
T d1djqa3          19 GPPMICTQNATAGEEYRRGWHPE--------KFRQTKNKDSVLIVGAGPSGSEAARVLMESGY---TVHLTDTAEKIGGH   87 (233)
T ss_dssp             SSCCCCSSCTTTTTHHHHCCCSS--------CCCCCSSCCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSTTTT
T ss_pred             CceeeeecCcccChHHhcCCCCC--------ccCcccCCceEEEEcccHHHHHHHHHHHHhcc---ceeeEeeccccCCc
Confidence            45567888888887763221111        11124567999999999999999999999988   89999998865322


Q ss_pred             CCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHh----HHHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEe
Q 011351           93 RPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE----WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIV  168 (488)
Q Consensus        93 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVl  168 (488)
                      ...     ..       .++++...      .....    .+.+.....   .. ..++...+.+..++..++.||++|+
T Consensus        88 ~~~-----~~-------~~~~~~~~------~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~d~vvi  145 (233)
T d1djqa3          88 LNQ-----VA-------ALPGLGEW------SYHRDYRETQITKLLKKN---KE-SQLALGQKPMTADDVLQYGADKVII  145 (233)
T ss_dssp             HHH-----HT-------TSTTCGGG------GHHHHHHHHHHHHHHTTC---TT-CEEECSCCCCCHHHHHTSCCSEEEE
T ss_pred             ccc-----cc-------ccceeecc------cccchhHHHHHHHHhhcc---ee-eeeecccccccchhhhhhccceeee
Confidence            100     00       00000000      01111    111111111   01 1222333333333444578999999


Q ss_pred             ccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc
Q 011351          169 ATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ  244 (488)
Q Consensus       169 AtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~  244 (488)
                      |||+.+.. +..++............   .........+++++|+|+|++|+|+|..|.+.+.+|+++++++.++.
T Consensus       146 AtG~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~r~~~~~~  217 (233)
T d1djqa3         146 ATGASECT-LWNELKARESEWAENDI---KGIYLIGDAEAPRLIADATFTGHRVAREIEEANPQIAIPYKRETIAW  217 (233)
T ss_dssp             CCCEECCH-HHHHHHHTTHHHHHTTC---CEEEECGGGTSCCCHHHHHHHHHHHHHTTTSSCTTSCCCCCCCCCCT
T ss_pred             ccCCCccc-ccccccccccccchhhh---hhhhhccccCCceeEecCchHHHHHHHHHHhcCCceEEEEecccccc
Confidence            99987653 22111111111111000   00000113568899999999999999999999999999999987654

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.65  E-value=4.7e-16  Score=124.47  Aligned_cols=105  Identities=30%  Similarity=0.474  Sum_probs=89.1

Q ss_pred             HHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEE
Q 011351          196 DADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNL  275 (488)
Q Consensus       196 ~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i  275 (488)
                      +++.+.+....+++++|||+|++|+|+|..|.++|.+||++++.+++++. +++++++.+.+.|+++||+++++++++++
T Consensus        11 ~s~~~l~~~~~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~-~d~~~~~~l~~~l~~~GI~i~~~~~v~~i   89 (117)
T d1ebda2          11 DSTGALNLGEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG-FEKQMAAIIKKRLKKKGVEVVTNALAKGA   89 (117)
T ss_dssp             CHHHHHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHHTTCEEEESEEEEEE
T ss_pred             ChhHhhChhhcCCeEEEECCCccceeeeeeecccccEEEEEEecceeccc-ccchhHHHHHHHHHhcCCEEEcCCEEEEE
Confidence            45666666667899999999999999999999999999999999999985 89999999999999999999999999999


Q ss_pred             EeCCCCcEEEEEeCCC--cEEEcCEEEEe
Q 011351          276 EAGSDGRVAAVKLEDG--STIDADTIVIG  302 (488)
Q Consensus       276 ~~~~~~~v~~v~l~~g--~~i~~D~vi~a  302 (488)
                      +..+++.. .....+|  +++++|.|+++
T Consensus        90 ~~~~~~~~-v~~~~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          90 EEREDGVT-VTYEANGETKTIDADYVLVT  117 (117)
T ss_dssp             EEETTEEE-EEEEETTEEEEEEESEEEEC
T ss_pred             EEcCCEEE-EEEEeCCCEEEEEeEEEEEC
Confidence            87655432 2223444  46999999974

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.65  E-value=3.1e-16  Score=125.01  Aligned_cols=105  Identities=20%  Similarity=0.379  Sum_probs=86.4

Q ss_pred             HHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEE
Q 011351          197 ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLE  276 (488)
Q Consensus       197 ~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~  276 (488)
                      ++........+++++|||+|++|+|+|..|+++|.+||++++.++++++ +++++++.+++.|+++||+++++++|++++
T Consensus        11 s~~~l~~~~~p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~~-~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~   89 (115)
T d1lvla2          11 STEALAPKALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT-YDSELTAPVAESLKKLGIALHLGHSVEGYE   89 (115)
T ss_dssp             HHHHTCCSSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHHTCEEETTCEEEEEE
T ss_pred             ChHHhCcccCCCeEEEECCCHHHHHHHHHHhhcccceEEEeeecccccc-ccchhHHHHHHHHHhhcceEEcCcEEEEEc
Confidence            3344444456799999999999999999999999999999999999985 799999999999999999999999999997


Q ss_pred             eCCCCcEEEEEeCCCcEEEcCEEEEeec
Q 011351          277 AGSDGRVAAVKLEDGSTIDADTIVIGIG  304 (488)
Q Consensus       277 ~~~~~~v~~v~l~~g~~i~~D~vi~a~G  304 (488)
                      .  +..+......++++++||.|++|+|
T Consensus        90 ~--~~~~~~~~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          90 N--GCLLANDGKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             T--TEEEEECSSSCCCEECCSCEEECCC
T ss_pred             C--CeEEEEEcCCCeEEEEcCEEEEecC
Confidence            2  2222111222335799999999998

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=99.64  E-value=6.2e-16  Score=134.41  Aligned_cols=158  Identities=23%  Similarity=0.290  Sum_probs=113.1

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC--cEEEEecCCcCcccccCHHHHH---------HHHHHHHHcCcEEEcCCeEEEE
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHLLQRLFTPSLAQ---------RYEQLYQQNGVKFVKGASIKNL  275 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~--~v~lv~~~~~~l~~~~~~~~~~---------~~~~~l~~~GV~v~~~~~v~~i  275 (488)
                      +|+|+|||+|++|+|+|..|++.+.  +|+++++.+.++.....+....         .....+...++.+..+. +..+
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~   80 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVVHDS-ATGI   80 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTHHHHHHTSSCGGGGEECSHHHHTTTEEEECCC-EEEC
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCccccccccccccchhhhhhhhhhhhhhccccceeEeeee-eEee
Confidence            7899999999999999999999874  7899999887665432222111         11233466788887664 3333


Q ss_pred             EeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhh--------cCCcccCCCEEeCCC-C-CCCCCCEEEEceecc
Q 011351          276 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER--------VGLNSSVGGIQVDGQ-F-RTRMPGIFAIGDVAA  345 (488)
Q Consensus       276 ~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~--------~gl~~~~g~i~vd~~-~-~t~~~~Ifa~GD~a~  345 (488)
                      .  ....  .+.+.+++++++|.+|+|+|.+|+..++..        .++..+++++.++.+ + .++.++||++||++.
T Consensus        81 ~--~~~~--~~~~~~~~~i~~D~li~atG~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iGd~~~  156 (186)
T d1fcda1          81 D--PDKK--LVKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKIAQIAGLTNDAGWCPVDIKTFESSIHKGIHVIGDASI  156 (186)
T ss_dssp             C--TTTT--EEEETTSCEEECSEEEECCCEEECCTTSTEEECHHHHHHTCCCTTSSEEBCSSSCBBSSSTTEEECTTSEE
T ss_pred             e--eccc--eeecccceeeccceEEEEeccccchhhhhhhhhhheeccCcccccccccceeeeeecccccCceEeccccc
Confidence            3  1222  467789999999999999999999765443        244455677777764 3 358999999999997


Q ss_pred             cCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 011351          346 FPLKMYDRTARVEHVDHARQSAQHCIKALLS  376 (488)
Q Consensus       346 ~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~  376 (488)
                      ....       ...+..|..||+.+|+||+.
T Consensus       157 ~~~~-------p~~~~~A~~q~~~~A~ni~~  180 (186)
T d1fcda1         157 ANPM-------PKSGYSANSQGKVAAAAVVV  180 (186)
T ss_dssp             CTTC-------CSSHHHHHHHHHHHHHHHHH
T ss_pred             cCCC-------CchHhHHHHHHHHHHHHHHH
Confidence            5321       22566789999999999874

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.63  E-value=8.7e-16  Score=123.72  Aligned_cols=106  Identities=21%  Similarity=0.424  Sum_probs=90.9

Q ss_pred             HHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEE
Q 011351          197 ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLE  276 (488)
Q Consensus       197 ~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~  276 (488)
                      ++.+.+....+++++|||+|++|+|+|..+.++|.+||++++++++++ .+++++.+.+.+.|++.||++++++++++++
T Consensus        15 s~~~l~l~~~p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~-~~d~~~~~~l~~~l~~~GI~i~~~~~v~~i~   93 (123)
T d1dxla2          15 STGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVP-TMDAEIRKQFQRSLEKQGMKFKLKTKVVGVD   93 (123)
T ss_dssp             HHHHTTCSSCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSST-TSCHHHHHHHHHHHHHSSCCEECSEEEEEEE
T ss_pred             HHHhhCccccCCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCc-hhhhcchhhhhhhhhcccceEEcCCceEEEE
Confidence            555655556789999999999999999999999999999999999997 4899999999999999999999999999999


Q ss_pred             eCCCCcEEEEEeCC-C--cEEEcCEEEEee
Q 011351          277 AGSDGRVAAVKLED-G--STIDADTIVIGI  303 (488)
Q Consensus       277 ~~~~~~v~~v~l~~-g--~~i~~D~vi~a~  303 (488)
                      ..+++....+...+ |  ++++||.|++|.
T Consensus        94 ~~~~~~~v~~~~~~~g~~~~i~~D~vLvAA  123 (123)
T d1dxla2          94 TSGDGVKLTVEPSAGGEQTIIEADVVLVSA  123 (123)
T ss_dssp             CSSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred             EccCeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence            76666444555543 3  358999999873

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.63  E-value=2.9e-15  Score=135.52  Aligned_cols=160  Identities=24%  Similarity=0.359  Sum_probs=109.4

Q ss_pred             eEEEECCCHHHHHHHHHHHhCC---CcEEEEecCCc--------------Ccc------------c----------ccC-
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWK---LDTTIIFPENH--------------LLQ------------R----------LFT-  248 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g---~~v~lv~~~~~--------------~l~------------~----------~~~-  248 (488)
                      +|+|||+|+.|+..|..+++++   .+|+++++..-              ++.            .          .++ 
T Consensus         3 ~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~~GG~cln~GciPsK~ll~~a~~~~~~~~~~~~G~~i~~~~~~~d~   82 (233)
T d1xdia1           3 RIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGIGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAKISL   82 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC------CBCH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCCCCceeecccccccEEEEeecchhhhhhhhhhcCCcccccCceeee
Confidence            6899999999999998877665   46888886420              000            0          000 


Q ss_pred             H-----------HHHHHHHHHHHHcCcEEEcCCeEEEEEeCC--CCcEEEEEeCCCc--EEEcCEEEEeecCccCChh--
Q 011351          249 P-----------SLAQRYEQLYQQNGVKFVKGASIKNLEAGS--DGRVAAVKLEDGS--TIDADTIVIGIGAKPTVSP--  311 (488)
Q Consensus       249 ~-----------~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~--~~~v~~v~l~~g~--~i~~D~vi~a~G~~p~~~~--  311 (488)
                      +           .....+...++..||+++.+... .+....  ......+...+|+  ++++|.+++++|.+|....  
T Consensus        83 ~~~~~~~~~v~~~~~~~~~~~~~~~gV~vi~G~~~-~~~~~~~~~~~~v~v~~~dg~~~~i~ad~viiAtG~~p~~~~~~  161 (233)
T d1xdia1          83 PQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGE-LIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILPSG  161 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEE-ECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEECCCGGC
T ss_pred             eeeccccceeeeeeecceehhhcccceeEEECccc-ccccccccccceEEEEecCCceeeeecceeeeecCccccccccc
Confidence            0           11123556678889999887422 111110  1122355666764  6899999999999886431  


Q ss_pred             ---------hhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC
Q 011351          312 ---------FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT  379 (488)
Q Consensus       312 ---------~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~  379 (488)
                               ++..+++.+ +|+|.||++|||+.|+|||+|||+..+.          ....|..+|+.+|.|+++...
T Consensus       162 ~~~~~~~l~l~~~gv~~~~~G~I~vd~~~~T~~~gIyA~GDv~~~~~----------l~~~A~~~g~~aa~~~~g~~~  229 (233)
T d1xdia1         162 SVPNTSGLGLERVGIQLGRGNYLTVDRVSRTLATGIYAAGDCTGLLP----------LASVAAMQGRIAMYHALGEGV  229 (233)
T ss_dssp             EEECCSSSCTTTTTCCCBTTTBCCCCSSSBCSSTTEEECSGGGTSCS----------CHHHHHHHHHHHHHHHTTCCC
T ss_pred             ccccccccccchhhhcccCCCcCCcCCCcccCCCCEEEEEEeCCCch----------hHHHHHHHHHHHHHHHcCCCC
Confidence                     345566665 5679999999999999999999987542          344589999999999997543

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.9e-15  Score=122.11  Aligned_cols=107  Identities=22%  Similarity=0.391  Sum_probs=89.4

Q ss_pred             HHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEE
Q 011351          197 ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLE  276 (488)
Q Consensus       197 ~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~  276 (488)
                      ++.+......+|+++|||+|++|+|+|..|+++|.+||++++++++++. +++++++.+.+.++++||++++++++++++
T Consensus        12 s~~~~~l~~~pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l~~-~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~   90 (125)
T d3grsa2          12 SDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRS-FDSMISTNCTEELENAGVEVLKFSQVKEVK   90 (125)
T ss_dssp             HHHHTTCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred             HHHHhChhhcCCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccccc-hhhHHHHHHHHHHHHCCCEEEeCCEEEEEE
Confidence            4455444456799999999999999999999999999999999999975 899999999999999999999999999998


Q ss_pred             eCCCCcE-EEEEeCCCc------EEEcCEEEEeec
Q 011351          277 AGSDGRV-AAVKLEDGS------TIDADTIVIGIG  304 (488)
Q Consensus       277 ~~~~~~v-~~v~l~~g~------~i~~D~vi~a~G  304 (488)
                      ..+++.. ..+...+|+      .+++|.|++|+|
T Consensus        91 ~~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2          91 KTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             EETTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred             EcCCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence            7655532 223334442      478999999998

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2e-15  Score=135.45  Aligned_cols=154  Identities=21%  Similarity=0.390  Sum_probs=109.0

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc------------------------------C-c---ccccC------
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH------------------------------L-L---QRLFT------  248 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~------------------------------~-l---~~~~~------  248 (488)
                      .++|||+|+.|+++|..+++.|.+|.++++...                              . .   ...++      
T Consensus         5 DviIIG~GpaG~~aA~~aar~G~kV~vIEk~~~GG~c~n~g~~~~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (221)
T d3grsa1           5 DYLVIGGGSGGLASARRAAELGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWRVIKE   84 (221)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGTSCCCCCCCCHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEeccCCCCccccchhhhhhhhhhHHHHHHHHhhhhhccccccccchhhhhhhh
Confidence            389999999999999999999999999986521                              0 0   00001      


Q ss_pred             ------HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCC--------hh--h
Q 011351          249 ------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV--------SP--F  312 (488)
Q Consensus       249 ------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~--------~~--~  312 (488)
                            ..+.......+++.||+++.+.-.  +. . ...+ .+. ....++.++.+++++|..|..        +.  |
T Consensus        85 ~~~~~v~~~~~~~~~~~~~~gV~~i~G~a~--~~-~-~~~~-~~~-~~~~~~~~~~~~iatG~~p~vp~~r~p~~~~l~L  158 (221)
T d3grsa1          85 KRDAYVSRLNAIYQNNLTKSHIEIIRGHAA--FT-S-DPKP-TIE-VSGKKYTAPHILIATGGMPSTPHERVPNTKDLSL  158 (221)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEEEESCCE--EC-S-CSSC-EEE-ETTEEEECSCEEECCCEEECCCCTEEESCTTTTG
T ss_pred             hhheEEeeeccchhhhhccCceEEEEEeee--ec-c-ccce-eee-eeccccccceeEEecCccccCCCccccCCCCcCc
Confidence                  012233445678889999876421  11 1 1111 122 233578999999999965543        32  6


Q ss_pred             hhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCC
Q 011351          313 ERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ  378 (488)
Q Consensus       313 ~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~  378 (488)
                      ++.|+..+ +|+|.||+++||++|+|||+|||+..+.          ....|..+|+.+|++|.+..
T Consensus       159 ~~~gv~~~~~G~I~vd~~~~T~~~gvyA~GDv~~~~~----------l~~~A~~~G~~aa~~~~~~~  215 (221)
T d3grsa1         159 NKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKAL----------LTPVAIAAGRKLAHRLFEYK  215 (221)
T ss_dssp             GGTTCCBCTTSCBCCCTTCBCSSTTEEECGGGGTSSC----------CHHHHHHHHHHHHHHHHSCC
T ss_pred             hhcCcEECCCccEEeCCCccccCCcEEEEEEccCCcC----------cHHHHHHHHHHHHHHHcCCC
Confidence            77788875 6779999999999999999999987543          34458999999999999754

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=9.5e-18  Score=143.69  Aligned_cols=147  Identities=18%  Similarity=0.241  Sum_probs=95.4

Q ss_pred             eeccccCCCCcccceeccccccccccccccccccccCCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC
Q 011351           12 HGLSLWCPQSPSLHRIRHSSAKNFQRRGFVVAYSSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY   91 (488)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~   91 (488)
                      .+...+|.+||.++++.....             ....++++|+|||||||||+||..|+++|+   +|+|+|+.+....
T Consensus        17 ~~~~~~C~~Np~~g~e~~~~~-------------~~~~~~k~V~IIGaGPAGL~AA~~la~~G~---~Vtl~E~~~~~GG   80 (179)
T d1ps9a3          17 VGKVTSCLVNPRACHETKMPI-------------LPAVQKKNLAVVGAGPAGLAFAINAAARGH---QVTLFDAHSEIGG   80 (179)
T ss_dssp             TTCCCCCSSCTTTTCTTTSCC-------------CSCSSCCEEEEECCSHHHHHHHHHHHTTTC---EEEEEESSSSSCT
T ss_pred             cCCeeEEeeCccccCcccccc-------------CCCCCCcEEEEECccHHHHHHHHHHHhhcc---ceEEEeccCccCc
Confidence            345667888888777653211             114557899999999999999999999998   8999999977543


Q ss_pred             CCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccC
Q 011351           92 ERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATG  171 (488)
Q Consensus        92 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG  171 (488)
                      . ..+.  ...+......+           ...+..+++++.++++++++.|+.   +        . ...||.+|+|||
T Consensus        81 ~-l~~~--~~~p~~~~~~~-----------~~~~~~~~~~~~gV~i~l~~~Vt~---~--------~-~~~~d~vilAtG  134 (179)
T d1ps9a3          81 Q-FNIA--KQIPGKEEFYE-----------TLRYYRRMIEVTGVTLKLNHTVTA---D--------Q-LQAFDETILASG  134 (179)
T ss_dssp             T-HHHH--TTSTTCTTHHH-----------HHHHHHHHHHHHTCEEEESCCCCS---S--------S-SCCSSEEEECCC
T ss_pred             e-EEEE--EeCcccchHHH-----------HHHHHHHhhhcCCeEEEeCCEEcc---c--------c-cccceeEEEeec
Confidence            2 0000  00000000000           012344566778999999987641   1        1 247899999999


Q ss_pred             CCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHH
Q 011351          172 CTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEV  222 (488)
Q Consensus       172 ~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~  222 (488)
                      +.++.++ .     +                ....+++++|+|+|.+++++
T Consensus       135 ~~~~~~~-~-----p----------------g~~~g~~v~vigggd~a~~~  163 (179)
T d1ps9a3         135 IPNRALA-Q-----P----------------LIDSGKTVHLIGGCDVAMEL  163 (179)
T ss_dssp             EECCTTH-H-----H----------------HHTTTCCEEECGGGTCCSSC
T ss_pred             CCCcccc-c-----c----------------hhccCCEEEEECCcHhhhhc
Confidence            8664321 1     1                12358899999999887765

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.59  E-value=1.1e-14  Score=131.74  Aligned_cols=157  Identities=21%  Similarity=0.298  Sum_probs=111.6

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc------------------------------------------c-
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------------------------------------R-  245 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~------------------------------------------~-  245 (488)
                      .++|||+|+.|+.+|..+++.|.+|.+++..+....                                          . 
T Consensus         5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~~~~~~~~GG~c~~~g~~~~k~l~~~~~~~~~~~~~~~~gi~~~~~   84 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGTNWGLGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWKLEDT   84 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTTTTBCCCSC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccccccccccccccchhhhhhhhhhhhHhhhhhccccccccc
Confidence            489999999999999999999999999985432100                                          0 


Q ss_pred             -ccC------------HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCc--EEEcCEEEEeecCccCCh
Q 011351          246 -LFT------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVS  310 (488)
Q Consensus       246 -~~~------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~--~i~~D~vi~a~G~~p~~~  310 (488)
                       ..+            ..+...+...+++.+|+++.+..  .+..  .+. ..+...+++  .+.++.+++++|.+|...
T Consensus        85 ~~~d~~~~~~~~~~~i~~l~~g~~~~l~~~~V~vi~G~~--~~~~--~~~-~~v~~~~~~~~~i~a~~ivi~~G~~p~~~  159 (235)
T d1h6va1          85 VKHDWEKMTESVQNHIGSLNWGYRVALREKKVVYENAYG--KFIG--PHK-IMATNNKGKEKVYSAERFLIATGERPRYL  159 (235)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEECCEE--EEEE--TTE-EEEECTTSCEEEEEEEEEEECCCEEECCC
T ss_pred             eeechhhhhheeeeeeeeccchhhhhhhccCceEEEeEE--eecc--ccc-eecccccccccccccccceeecCCCceeE
Confidence             000            01223345567788999987743  2321  222 245555554  588999999999998642


Q ss_pred             ----------hhhhcCCccc--CCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCC
Q 011351          311 ----------PFERVGLNSS--VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ  378 (488)
Q Consensus       311 ----------~~~~~gl~~~--~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~  378 (488)
                                .++..++..+  .|.|.||++||||+|+|||+|||+..+..         ....|..+|+.+|++|+++.
T Consensus       160 ~i~~~~~~~~~l~~~gv~l~~~~g~I~vd~~~~TsvpgIyA~GDv~~g~~~---------l~~~A~~eG~~aa~~~~g~~  230 (235)
T d1h6va1         160 GIRDSCTRTIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEGKLE---------LTPVAIQAGRLLAQRLYGGS  230 (235)
T ss_dssp             SSEEESCTTSCCTTTTCCCCSSSCCBCCCTTSBCSSTTEEECGGGBTTSCC---------CHHHHHHHHHHHHHHHHHCC
T ss_pred             EEeeccceeeccccceeeeccccCccccCCccccCCCCEEEEEeccCCCcc---------cHHHHHHHHHHHHHHHcCCC
Confidence                      1345566655  47899999999999999999999864322         33458999999999999865


Q ss_pred             C
Q 011351          379 T  379 (488)
Q Consensus       379 ~  379 (488)
                      +
T Consensus       231 ~  231 (235)
T d1h6va1         231 T  231 (235)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.59  E-value=4.1e-15  Score=133.35  Aligned_cols=152  Identities=22%  Similarity=0.324  Sum_probs=109.2

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc-----------------------Cccc--------------ccC--
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH-----------------------LLQR--------------LFT--  248 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~-----------------------~l~~--------------~~~--  248 (488)
                      ..++|||+|+.|+++|..++++|.+|+++++...                       .+.+              ...  
T Consensus         6 ~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~~GG~c~~~gc~p~k~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   85 (220)
T d1lvla1           6 TTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPRLDIG   85 (220)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCCCHH
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcccccccccchhhhhhHHHHhhhhhccccccceEEeccceehHH
Confidence            4699999999999999999999999999986520                       0000              000  


Q ss_pred             ----------HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCCh--------
Q 011351          249 ----------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS--------  310 (488)
Q Consensus       249 ----------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~--------  310 (488)
                                ..........+++.+++++.+..  .+..  ..    ....++.++.+|.+++|||.+|...        
T Consensus        86 ~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~~--~~~~--~~----~~~~~~~~i~a~~viiAtG~~p~~lp~~~~~~~  157 (220)
T d1lvla1          86 QSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWA--KVLD--GK----QVEVDGQRIQCEHLLLATGSSSVELPRRPRTKG  157 (220)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCE--EEEE--TT----EEEETTEEEECSEEEECCCEEECCBTEEECCSS
T ss_pred             HHhhhheeEEeeeccchhhhhccCceEEEEeee--cccC--cc----cccccceeEeeceeeEcCCCCcccccccccccC
Confidence                      01112334556777888887642  2221  11    1223556899999999999988642        


Q ss_pred             -hhhhcCCcccCCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 011351          311 -PFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA  377 (488)
Q Consensus       311 -~~~~~gl~~~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~  377 (488)
                       .+...++..++|+|.||+++||+.|+|||+|||+..+.          ....|..+|+.+|++|.+.
T Consensus       158 ~~~~~~~~~~~~g~i~vd~~~~T~~~~I~A~GDv~~~~~----------l~~~a~~~g~~~a~~i~G~  215 (220)
T d1lvla1         158 FNLECLDLKMNGAAIAIDERCQTSMHNVWAIGDVAGEPM----------LAHRAMAQGEMVAEIIAGK  215 (220)
T ss_dssp             SSGGGSCCCEETTEECCCTTCBCSSTTEEECGGGGCSSC----------CHHHHHHHHHHHHHHHTTC
T ss_pred             CcceeeehhhcCCcccccchhhcCCCCEEEEEEeCCccc----------chhhhhhhHHHHHHHHcCC
Confidence             24455666778999999999999999999999998653          3455889999999999874

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.57  E-value=3e-14  Score=124.66  Aligned_cols=155  Identities=18%  Similarity=0.261  Sum_probs=111.9

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc--------------------ccccCHHHHHHHHHHHHHcCcE
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--------------------QRLFTPSLAQRYEQLYQQNGVK  265 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l--------------------~~~~~~~~~~~~~~~l~~~GV~  265 (488)
                      ..++|+|||||++|++.|..+++.|.++.++++.....                    ....++++...+.+.+++.|++
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~q~~~~g~~   83 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTT   83 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCE
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccccccccchhhhccccccccccchHHHHHHHHHHHhhcce
Confidence            35789999999999999999999999999998553211                    0112356777777778889999


Q ss_pred             EEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecC-----ccCChhhhhcCCccc-CCCEEeCC-CCCCCCCCEE
Q 011351          266 FVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA-----KPTVSPFERVGLNSS-VGGIQVDG-QFRTRMPGIF  338 (488)
Q Consensus       266 v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~-----~p~~~~~~~~gl~~~-~g~i~vd~-~~~t~~~~If  338 (488)
                      +..+ .|.+++..++.  ..+. .+..+..+|.+++++|.     .|++.+++. +++.+ +|.|.+|+ +++|+.|+||
T Consensus        84 i~~~-~V~~~~~~~~~--~~v~-~~~~~~~~~~~~~a~g~~~~g~~p~~~~~~~-~veld~~G~i~~~~~~~~Ts~~GV~  158 (192)
T d1vdca1          84 IFTE-TVTKVDFSSKP--FKLF-TDSKAILADAVILAIGAVAKGHEPATKFLDG-GVELDSDGYVVTKPGTTQTSVPGVF  158 (192)
T ss_dssp             EECC-CCCEEECSSSS--EEEE-CSSEEEEEEEEEECCCEEECCEEESCGGGTT-SSCBCTTSCBCCCTTSCBCSSTTEE
T ss_pred             eeee-eEEecccccCc--EEec-ccceeeeeeeEEEEeeeeecccCchHHHhcC-ceeecCCCeEEeCCCceEecCCCEE
Confidence            9866 57888754332  2333 44557899999999985     577776654 46654 67899985 8899999999


Q ss_pred             EEceecccCCccCCcccccccHHHHHHHHHHHHHHH
Q 011351          339 AIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL  374 (488)
Q Consensus       339 a~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i  374 (488)
                      |+|||...+..         ....|...|..+|.++
T Consensus       159 a~GDv~~~~~r---------~~v~A~g~G~~aA~~~  185 (192)
T d1vdca1         159 AAGDVQDKKYR---------QAITAAGTGCMAALDA  185 (192)
T ss_dssp             ECGGGGCSSCC---------CHHHHHHHHHHHHHHH
T ss_pred             EeeecCCcccc---------eEEEEEechHHHHHHH
Confidence            99999986543         1223445555555443

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=5.4e-14  Score=122.81  Aligned_cols=154  Identities=21%  Similarity=0.278  Sum_probs=109.2

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc---------------ccccCHHHHHHHHHHHHHcCcEEEcCC
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL---------------QRLFTPSLAQRYEQLYQQNGVKFVKGA  270 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l---------------~~~~~~~~~~~~~~~l~~~GV~v~~~~  270 (488)
                      +.++|+|||||++|++.|..+++.|.+|+++++.+...               ....+.++.+.+...+.+.++++..+ 
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   82 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD-   82 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECC-
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccccccccchhhhhhccccccchHHHHHHHHHHHHhcCcEEecc-
Confidence            45689999999999999999999999999998754211               11223466777778888899999876 


Q ss_pred             eEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC-----ChhhhhcCCcccCCCEEeCC-----CCCCCCCCEEEE
Q 011351          271 SIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT-----VSPFERVGLNSSVGGIQVDG-----QFRTRMPGIFAI  340 (488)
Q Consensus       271 ~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~-----~~~~~~~gl~~~~g~i~vd~-----~~~t~~~~Ifa~  340 (488)
                      .|+++...++.  ..+... ...+.++.+++++|..|.     ..+++. .++.++|+|.+|+     .++|++|+|||+
T Consensus        83 ~V~~~~~~~~~--~~v~~~-~~~~~~~~viva~G~~~~~~~~~~~~~~~-~~e~~~g~i~~~~~~~~~~~~T~v~gV~aa  158 (190)
T d1trba1          83 HINKVDLQNRP--FRLNGD-NGEYTCDALIIATGASARYHSPNTAIFEG-QLELENGYIKVQSGIHGNATQTSIPGVFAA  158 (190)
T ss_dssp             CEEEEECSSSS--EEEEES-SCEEEEEEEEECCCEEECCEEESCGGGTT-TSCEETTEECCCCSSSSCTTBCSSTTEEEC
T ss_pred             eeEEEecCCCc--EEEEEe-eeeEeeeeeeeecceeeeeecccceeecc-eEecCCcEEEEecCCcccccccccCeEEEe
Confidence            58887754332  234443 456999999999997654     333333 3455678899984     558999999999


Q ss_pred             ceecccCCccCCcccccccHHHHHHHHHHHHHH
Q 011351          341 GDVAAFPLKMYDRTARVEHVDHARQSAQHCIKA  373 (488)
Q Consensus       341 GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~  373 (488)
                      |||+..+..         ..-.|.-+|..+|.+
T Consensus       159 GDv~~~~~~---------q~i~Aag~G~~AA~~  182 (190)
T d1trba1         159 GDVMDHIYR---------QAITSAGTGCMAALD  182 (190)
T ss_dssp             GGGGCSSSC---------CHHHHHHHHHHHHHH
T ss_pred             EEecCccee---------EEEEEeccHHHHHHH
Confidence            999975432         222344556666544

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.54  E-value=1.3e-14  Score=116.47  Aligned_cols=106  Identities=25%  Similarity=0.396  Sum_probs=85.5

Q ss_pred             HHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEE
Q 011351          197 ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLE  276 (488)
Q Consensus       197 ~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~  276 (488)
                      ++.+.+.-..+++++|||+|++|+|+|..|+++|.+||++.+. ++++ .+++++++.+.+.|+++||+|++++++++++
T Consensus        10 sd~~~~l~~~P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~-~~l~-~~D~~~~~~l~~~l~~~Gv~i~~~~~v~~~~   87 (122)
T d1h6va2          10 SDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILLR-GFDQDMANKIGEHMEEHGIKFIRQFVPTKIE   87 (122)
T ss_dssp             HHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-SSST-TSCHHHHHHHHHHHHHTTEEEEESCEEEEEE
T ss_pred             chHHhCcccCCCeEEEECCCccHHHHHHHHhhcCCeEEEEEec-hhhc-cCCHHHHHHHHHHHHHCCCEEEECCEEEEEE
Confidence            5556555567899999999999999999999999999999875 6776 4899999999999999999999999999987


Q ss_pred             eCCCC--cEEEEEeCCC---c--EEEcCEEEEeec
Q 011351          277 AGSDG--RVAAVKLEDG---S--TIDADTIVIGIG  304 (488)
Q Consensus       277 ~~~~~--~v~~v~l~~g---~--~i~~D~vi~a~G  304 (488)
                      ..+++  ....+.+.++   +  .+++|.|++|+|
T Consensus        88 ~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          88 QIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             EEECSTTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred             EecCCCccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence            53322  1223443322   2  467999999998

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.54  E-value=3.3e-14  Score=128.15  Aligned_cols=159  Identities=25%  Similarity=0.306  Sum_probs=102.5

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc-----------------------------------ccC-----
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----------------------------------LFT-----  248 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~-----------------------------------~~~-----  248 (488)
                      .++|||+|+.|+.+|..+++.|.+|+++++.+.+-..                                   .+.     
T Consensus         8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~GG~~~~~g~~~~~~~~~~a~~~~~~~~~~~~G~~~~~~~~~~~~~~   87 (229)
T d1ojta1           8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEPELDIDMLR   87 (229)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCCHHHHH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeeccccchhhhhhhhhhhHHhhhhHhhcCCcccCCcccHHHHH
Confidence            4899999999999999999999999999987543110                                   000     


Q ss_pred             -------HHHHHHHHHHHHHcCcEEEcCCeEEEEE--------eCCCCcEEEEEeCCCcEEEcCEEEEeecC-ccCCh--
Q 011351          249 -------PSLAQRYEQLYQQNGVKFVKGASIKNLE--------AGSDGRVAAVKLEDGSTIDADTIVIGIGA-KPTVS--  310 (488)
Q Consensus       249 -------~~~~~~~~~~l~~~GV~v~~~~~v~~i~--------~~~~~~v~~v~l~~g~~i~~D~vi~a~G~-~p~~~--  310 (488)
                             ..+..-+.......+++++.+.-...-.        ....... .......+...+|-++++.|. .|+..  
T Consensus        88 ~~~~~~~~~l~~~~~~~~~~~~v~vi~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  166 (229)
T d1ojta1          88 AYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYEQ-AAPTGEKKIVAFKNCIIAAGSRAPNGKLI  166 (229)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTEEEEEEEEEEETTE-EEEEEEEEEEEEEEEEECCCEEEECGGGT
T ss_pred             HHHHHHHHHHhcchHhHhhcCceEEEEeeeeecCCccccccccccccccc-ccccccccceecceEEEEecccCCccccc
Confidence                   0112223344566677776543211100        0000000 001111134556666666554 45433  


Q ss_pred             hhhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCC
Q 011351          311 PFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ  378 (488)
Q Consensus       311 ~~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~  378 (488)
                      .++..|++.+ +|+|.||+++|||+|+|||+|||+..+.          ....|..+|+.+|.+|++..
T Consensus       167 ~~e~~g~~~d~~G~I~vd~~~~TsvpgVyAaGDv~~~~~----------l~~~A~~eG~~Aa~~i~G~~  225 (229)
T d1ojta1         167 SAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQPM----------LAHKAVHEGHVAAENCAGHK  225 (229)
T ss_dssp             TGGGTTCCCCTTSCCCCCTTSBCSSTTEEECGGGTCSSC----------CHHHHHHHHHHHHHHHTTCC
T ss_pred             chhhhCccCCCCCCEEcCCCccCCCCCEEEEEecCCCcc----------hHHHHHHHHHHHHHHHcCCC
Confidence            4688899876 6779999999999999999999997653          34458899999999999743

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.53  E-value=2.9e-14  Score=128.27  Aligned_cols=155  Identities=23%  Similarity=0.335  Sum_probs=109.9

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc------------------------------------------c
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------------L  246 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~------------------------------------------~  246 (488)
                      .++|||+|+.|+..|..+++.|.+|.++++.......                                          .
T Consensus         5 DviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~~~~~~~gg~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~   84 (229)
T d3lada1           5 DVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGISTGEVA   84 (229)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEECSCCE
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEecccCCCccccccccccccccchhhhhhhhhhhhhhhhhhhhhcccccCcce
Confidence            4899999999999999999999999999864211000                                          0


Q ss_pred             cC------------HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCC--cEEEcCEEEEeecCccCCh--
Q 011351          247 FT------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVS--  310 (488)
Q Consensus       247 ~~------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g--~~i~~D~vi~a~G~~p~~~--  310 (488)
                      ++            ..+...+...++..||+++.+.....   . ... ......++  .++.++.+++++|.+|...  
T Consensus        85 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~gV~vi~G~~~~~---~-~~~-~~~~~~~~~~~~~~~~~~i~atG~~~~~~~~  159 (229)
T d3lada1          85 IDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLL---A-GKK-VEVTAADGSSQVLDTENVILASGSKPVEIPR  159 (229)
T ss_dssp             ECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEEC---S-TTC-EEEECTTSCEEEECCSCEEECCCEEECCCTE
T ss_pred             eecchhhhhhhHHHHHhhhhHHHHhhcCCeEEEEeEEccc---c-cce-eeccccCccceeeecccccccCCcccccccc
Confidence            00            01223345566778999987643221   1 111 12333332  3578999999999887643  


Q ss_pred             -------hhhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCC
Q 011351          311 -------PFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ  378 (488)
Q Consensus       311 -------~~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~  378 (488)
                             ++++.|+..+ +|+|.||++++|++|+|||+|||+..+.          ....|..+|+.+|++|.+..
T Consensus       160 ~~~~~~~~~~~~gv~l~~~G~i~vd~~~~T~vpgiyA~GDv~~g~~----------l~~~A~~~G~~aa~~i~g~~  225 (229)
T d3lada1         160 RPVTTDLLAADSGVTLDERGFIYVDDYCATSVPGVYAIGDVVRGAM----------LAHKASEEGVVVAERIAGHK  225 (229)
T ss_dssp             EECCTTCCSSCCSCCBCTTSCBCCCTTSBCSSTTEEECGGGSSSCC----------CHHHHHHHHHHHHHHHHHCC
T ss_pred             cccccccchHhcCeeecCCCcEEecccccCCCCCEEEEeCCcchHH----------HHHHHHHHHHHHHHHHcCCC
Confidence                   4567788776 6789999999999999999999987543          34458889999999998754

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.51  E-value=1.3e-14  Score=122.36  Aligned_cols=148  Identities=11%  Similarity=0.035  Sum_probs=112.4

Q ss_pred             ccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhh-cCCeEEEE--CCCHHHHHHHHHHHhCCCcEEEEecCCcCccc
Q 011351          169 ATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE-KAKKVVVV--GGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR  245 (488)
Q Consensus       169 AtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~-~~~~vvVv--G~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~  245 (488)
                      |||+.|..++++||.+.++.+.+ +..+   +..... .++.++|+  |+|++|+|+|..|+++|.+||++++.+.+++.
T Consensus         4 atG~~~~~~~pipG~~~~~~~v~-t~~d---~l~~~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~   79 (156)
T d1djqa2           4 TDGTNCLTHDPIPGADASLPDQL-TPEQ---VMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYM   79 (156)
T ss_dssp             SSCCCTTTSSCCTTCCTTSTTEE-CHHH---HHHTCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHH
T ss_pred             CCCCCCCCCCCCCCccCCCCEEE-CHHH---HhcCccccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccccc
Confidence            89999876557788776655444 3333   333333 44556655  99999999999999999999999999988875


Q ss_pred             ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcCCcccCCCEE
Q 011351          246 LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQ  325 (488)
Q Consensus       246 ~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~  325 (488)
                       +++.....+.+.|++.||++++++.+.+++.+      .+.+.+.....++.+..++|..|+....+..+++.| +.+.
T Consensus        80 -~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~------~v~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~le~D-~vil  151 (156)
T d1djqa2          80 -HFTLEYPNMMRRLHELHVEELGDHFCSRIEPG------RMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFD-SLVL  151 (156)
T ss_dssp             -HHTTCHHHHHHHHHHTTCEEEETEEEEEEETT------EEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECS-EEEE
T ss_pred             -cchhHHHHHHHHHhhccceEEeccEEEEecCc------ceEEEeeeccccceeeeeeEEEecccCCccCcEecc-eEEE
Confidence             67777888999999999999999999999843      344555555667888888999998887777777765 3555


Q ss_pred             eCC
Q 011351          326 VDG  328 (488)
Q Consensus       326 vd~  328 (488)
                      ++.
T Consensus       152 vtg  154 (156)
T d1djqa2         152 VTG  154 (156)
T ss_dssp             ESC
T ss_pred             Eec
Confidence            543

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.48  E-value=8.8e-13  Score=120.49  Aligned_cols=123  Identities=15%  Similarity=0.277  Sum_probs=83.8

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCC-cEEEEEeCCCcEEEcCEEEEeecCccCC---------hhhhhcCC
Q 011351          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG-RVAAVKLEDGSTIDADTIVIGIGAKPTV---------SPFERVGL  317 (488)
Q Consensus       248 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~-~v~~v~l~~g~~i~~D~vi~a~G~~p~~---------~~~~~~gl  317 (488)
                      ...+.+.+.+.+++.||+++++++|++++..+++ .+..+...+++++.||.||+|+|-.+..         .+++++++
T Consensus       108 a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~a~~VIiAtGG~S~p~~G~~g~g~~~a~~~~~  187 (253)
T d2gqfa1         108 AEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATGGLSMPGLGATPFGYQIAEQFGI  187 (253)
T ss_dssp             THHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEEECCCCSSCGGGTCCSHHHHHHHHTTC
T ss_pred             hhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCCEEEEeCEEEEcCCcccccccCCCchHHHHHHhccc
Confidence            4567788888899999999999999999875543 3333456677889999999999965421         24667766


Q ss_pred             cc------cCCCEEeCC----CCCC-CCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 011351          318 NS------SVGGIQVDG----QFRT-RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  375 (488)
Q Consensus       318 ~~------~~g~i~vd~----~~~t-~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~  375 (488)
                      ..      ..|++.+.+    +|+. .+|++|.+|.+........|.     ..+.|-..|..+++.|.
T Consensus       188 ~i~~~~~~~~ggv~~~~i~~~t~es~~~~gl~~~ge~ldv~g~~gg~-----n~~~a~~s~~~~~~~~~  251 (253)
T d2gqfa1         188 PVIPPRAVTMGGVDTKVISSKTMESNQVSGLYFIGEVLDVTGWLGGY-----NFQWAWSSAYACALSIS  251 (253)
T ss_dssp             CEEEEEEEEEEEECGGGBCTTTCBBSSSTTEEECGGGBSCEECTTTH-----HHHHHHHHHHHHHHHHH
T ss_pred             cccccccccCCCCcccccCccchhhhcCCCcEEeeeEEEeeeecCCE-----ehhhhHhHHHHHHHHHh
Confidence            54      235554432    4555 589999999888754433332     22335556666666654

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=2.4e-12  Score=111.41  Aligned_cols=163  Identities=19%  Similarity=0.298  Sum_probs=117.3

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc--Cc-----------ccccCHHHHHHHHHHHHHcCcEEEcCCeEEEE
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH--LL-----------QRLFTPSLAQRYEQLYQQNGVKFVKGASIKNL  275 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~--~l-----------~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i  275 (488)
                      .|+|||||++|+++|..++++|.+|++++++..  +.           +....+.+...+....++.+++......+..+
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKL   82 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEE
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEEEecCCcccccccceeccccchhhhHHHHHHHHHHhhheeceeeccceeeee
Confidence            489999999999999999999999999986421  11           11123566677777788889999988888887


Q ss_pred             EeCCCC-cEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCc
Q 011351          276 EAGSDG-RVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR  353 (488)
Q Consensus       276 ~~~~~~-~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~  353 (488)
                      ...... ........+++++.++.++.++|..++.......++... .|.+.||..++|+.|+||++|||...+...   
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~i~v~~~~~t~~~gv~a~gd~~~~~~~~---  159 (184)
T d1fl2a1          83 IPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTNWLEGAVERNRMGEIIIDAKCETNVKGVFAAGDCTTVPYKQ---  159 (184)
T ss_dssp             ECCSSTTCCEEEEETTSCEEEEEEEEECCCEEEESCGGGTTTSCBCTTSCBCCCTTCBCSSTTEEECSTTBSCSSCC---
T ss_pred             cccccccceeeeeeecceeeecccccccccccccccccccccccccccceeccCCceeeeCCCEEEEeeecCcccCC---
Confidence            653322 233455667778999999999998776666555555543 678999999999999999999999876431   


Q ss_pred             ccccccHHHHHHHHHHHHHHHhc
Q 011351          354 TARVEHVDHARQSAQHCIKALLS  376 (488)
Q Consensus       354 ~~~~~~~~~A~~~g~~~a~~i~~  376 (488)
                        .+.....+..+|..+++.|..
T Consensus       160 --~vva~g~G~~aA~~~~~~l~~  180 (184)
T d1fl2a1         160 --IIIATGEGAKASLSAFDYLIR  180 (184)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH
T ss_pred             --cEEEEECcHHHHHHHHHHHhh
Confidence              011223344555555555553

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.41  E-value=2.2e-12  Score=116.05  Aligned_cols=155  Identities=26%  Similarity=0.449  Sum_probs=104.0

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccc-----cC-----------------------------------
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-----FT-----------------------------------  248 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~-----~~-----------------------------------  248 (488)
                      .|+|||+|+.|+.+|..+++.|.+|.++++.+.+-...     .+                                   
T Consensus         7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~~~   86 (233)
T d1v59a1           7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIKINVAN   86 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCEEECHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCcceEeEEeeccccccccccchhHHHhhhhHhhcCeeEeeceecchhh
Confidence            58999999999999999999999999999875432100     00                                   


Q ss_pred             ---------HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCC--------cEEEcCEEE--------Eee
Q 011351          249 ---------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--------STIDADTIV--------IGI  303 (488)
Q Consensus       249 ---------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g--------~~i~~D~vi--------~a~  303 (488)
                               ..+........++.+|+++.+.-  ++.  +... ..+....+        ..++++.++        .++
T Consensus        87 ~~~~~~~~i~~~~~~~~~l~~~~~v~~~~G~a--~f~--~~~~-~~v~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~  161 (233)
T d1v59a1          87 FQKAKDDAVKQLTGGIELLFKKNKVTYYKGNG--SFE--DETK-IRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFV  161 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCEEEESEE--EES--SSSE-EEEECCTTCTTCCSSCEEEEEEEEEECCCEEECCCS
T ss_pred             hhheeeeEEEEeecceeeeeccCCeEEEEEEE--EEe--cCCC-cEEEecccccceeeeeeeccCCeEEEecccccceec
Confidence                     00111223334555676665421  121  1111 12222221        234444444        488


Q ss_pred             cCccCChh--hhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCC
Q 011351          304 GAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ  378 (488)
Q Consensus       304 G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~  378 (488)
                      |.+|+++.  +++.|++.+ +|+|.||++++|+.|+|||+|||+..+.          ....|..+|..+|++|+++.
T Consensus       162 G~~p~~~~l~l~~~gv~~~~~g~i~vd~~~~T~~~~v~A~GD~~~g~~----------l~~~a~~~G~~aa~~i~~~~  229 (233)
T d1v59a1         162 GRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDVTFGPM----------LAHKAEEEGIAAVEMLKTGH  229 (233)
T ss_dssp             CEEECCTTSCTTTTTCCBCTTSCBCCCTTSBCSSTTEEECGGGSSSCC----------CHHHHHHHHHHHHHHHHHSC
T ss_pred             ccccCCCCcCchhcCeEEcCCCcEEECCeEecCCCCEEEEcCCcccHH----------HHHHHHHHHHHHHHHHccCC
Confidence            99999874  578888875 6789999999999999999999997653          34458899999999998754

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.36  E-value=5.8e-13  Score=115.35  Aligned_cols=109  Identities=26%  Similarity=0.437  Sum_probs=86.5

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      ++.+|+|||||++|+.+|..|++.|. +..+++++++...+|+++.+++.+........                .....
T Consensus         2 m~a~VvIIGgG~~G~e~A~~l~~~g~-~v~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~----------------~~~~~   64 (183)
T d1d7ya1           2 LKAPVVVLGAGLASVSFVAELRQAGY-QGLITVVGDEAERPYDRPPLSKDFMAHGDAEK----------------IRLDC   64 (183)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTC-CSCEEEEESSCSCCBCSGGGGTTHHHHCCGGG----------------SBCCG
T ss_pred             CCCCEEEECccHHHHHHHHHHHhcCC-ceEEEEEecccccchhhHHHhhhhhhhhhhhh----------------HHHHH
Confidence            35679999999999999999999987 67899999998888888777653322111100                11123


Q ss_pred             HHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCC
Q 011351          130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS  175 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~  175 (488)
                      +...+++++.+.++..++.+...+++.+|+++.||.+++|+|..|.
T Consensus        65 ~~~~~i~~~~~~~v~~i~~~~~~~~~~~g~~~~~D~vi~a~G~~p~  110 (183)
T d1d7ya1          65 KRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPR  110 (183)
T ss_dssp             GGSTTCEEEETCCEEEEETTTTEEEETTSCEEECSEEEECCCEEEC
T ss_pred             hhcCCeEEEEeccccccccccceeEecCCcEeeeeeEEEEEEEEcc
Confidence            3456899999999999999999999999999999999999998765

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.32  E-value=1.8e-11  Score=110.60  Aligned_cols=78  Identities=24%  Similarity=0.424  Sum_probs=64.3

Q ss_pred             cEEEcCEEEEeecCccCChh----------hhhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccH
Q 011351          292 STIDADTIVIGIGAKPTVSP----------FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHV  360 (488)
Q Consensus       292 ~~i~~D~vi~a~G~~p~~~~----------~~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~  360 (488)
                      +.+++|.+++++|.+|....          ++.++++.+ +|.|.||+++|||.|+|||+|||+..+.          ..
T Consensus       148 e~i~~~~i~ia~G~~p~~~~~~~~~~~~l~l~~~gv~~~~~G~I~vd~~~~Ts~~~iyA~GDv~~~~~----------~~  217 (240)
T d1feca1         148 ETLDTEYILLATGSWPQHLGIEVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTDRVM----------LT  217 (240)
T ss_dssp             EEEEEEEEEECCCEEECCCCSBEESCTTSCGGGGTCCBCTTSCBCCCTTCBCSSTTEEECGGGGCSCC----------CH
T ss_pred             EEEecceEEEecCCceeEccccccccCCCCccccCeEECCCCcEEcCcccCcCCCCEEEEEECCCCcc----------ch
Confidence            46899999999999887431          567788776 5789999999999999999999987643          34


Q ss_pred             HHHHHHHHHHHHHHhcCCC
Q 011351          361 DHARQSAQHCIKALLSAQT  379 (488)
Q Consensus       361 ~~A~~~g~~~a~~i~~~~~  379 (488)
                      ..|..+|+.+|+++++.++
T Consensus       218 ~~A~~eg~~aa~~~~~~~~  236 (240)
T d1feca1         218 PVAINEGAAFVDTVFANKP  236 (240)
T ss_dssp             HHHHHHHHHHHHHHHSSCC
T ss_pred             hhHHHHHHHHHHHHhCCCC
Confidence            4589999999999997543

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=1.8e-11  Score=108.76  Aligned_cols=152  Identities=25%  Similarity=0.360  Sum_probs=108.9

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc----------------------------c--------ccC----
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------------R--------LFT----  248 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~----------------------------~--------~~~----  248 (488)
                      .++|||+|+.|+++|..++++|.+|+++++.. +-.                            .        .++    
T Consensus         4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~-~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~~   82 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAMYGQKCALIEAKE-LGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNWETL   82 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEECHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEeccC-cCCeEecccccccccchhhHHHHHHHHhhhhhcCccCCcccccHHHH
Confidence            48999999999999999999999999998753 100                            0        000    


Q ss_pred             --------HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChh--------h
Q 011351          249 --------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--------F  312 (488)
Q Consensus       249 --------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~--------~  312 (488)
                              ..+...++..+++.||++..........        .....+++.+.++.++++||.+|....        +
T Consensus        83 ~~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~~~~--------~~~~~~~~~~~~~~~iiatG~~p~ip~ip~~~~l~l  154 (217)
T d1gesa1          83 IASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDA--------KTLEVNGETITADHILIATGGRPSHPREPANDNINL  154 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEET--------TEEEETTEEEEEEEEEECCCEEECCCEEESCTTSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCeEEEEeeeccccee--------eeecCCCceeeeeeeeeecCccccCCCCCCcCCccc
Confidence                    0122334455677899888765432221        122346678999999999998876431        3


Q ss_pred             hhcCCccc-CCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC
Q 011351          313 ERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT  379 (488)
Q Consensus       313 ~~~gl~~~-~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~~~~  379 (488)
                      +..++..+ ++.+.+|+.++|+.|+||++||+....          +..+.+..+|+.++.++++..+
T Consensus       155 ~~~gv~~~~~~~i~~d~~~~t~~~~i~~iG~g~~g~----------ela~~~~~~G~~v~~~~~~~~p  212 (217)
T d1gesa1         155 EAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNTGAV----------ELTPVAVAAGRRLSERLFNNKP  212 (217)
T ss_dssp             HHHTCCBCTTSCBCCCTTSBCSSTTEEECSGGGTSC----------CCHHHHHHHHHHHHHHHHTTCT
T ss_pred             ccccEEEcCCccEeeCchhccCCCcEEEECCCccHH----------HHHHHHHHHHHHHHHHHhCCCC
Confidence            44566654 678999999999999999999998743          2445688899999999987553

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.28  E-value=2.9e-12  Score=109.04  Aligned_cols=105  Identities=26%  Similarity=0.447  Sum_probs=79.4

Q ss_pred             eEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHHH
Q 011351           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKE  132 (488)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (488)
                      ||||||||++|+.+|..|++ +.   +|||+++++.+.|.++.++.. +..... ...+           .....+++.+
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~---~Vtvv~~~~~~~~~~~~~~~~-~~~~~~-~~~~-----------~~~~~~~~~~   64 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TY---EVTVIDKEPVPYYSKPMLSHY-IAGFIP-RNRL-----------FPYSLDWYRK   64 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TS---EEEEECSSSSCCCCSTTHHHH-HTTSSC-GGGG-----------CSSCHHHHHH
T ss_pred             eEEEECCcHHHHHHHHHHHc-CC---CEEEEeccccccccccchhhh-hhhhhh-hhhh-----------hHHHHHHHHh
Confidence            79999999999999999976 33   899999998887876665542 221111 0111           2345778889


Q ss_pred             CCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCC
Q 011351          133 KGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS  175 (488)
Q Consensus       133 ~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~  175 (488)
                      .++++++++.|+.++...+.+.. ++.++.||.+++|+|..+.
T Consensus        65 ~~v~~~~~~~v~~i~~~~~~~~~-~~~~i~~D~li~a~G~~~~  106 (167)
T d1xhca1          65 RGIEIRLAEEAKLIDRGRKVVIT-EKGEVPYDTLVLATGAPNV  106 (167)
T ss_dssp             HTEEEECSCCEEEEETTTTEEEE-SSCEEECSEEEECCCEECC
T ss_pred             ccceeeeeccccccccccccccc-cccccccceeEEEEEecCC
Confidence            99999999999999987776655 5556999999999998654

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.25  E-value=4.3e-11  Score=107.69  Aligned_cols=78  Identities=24%  Similarity=0.428  Sum_probs=61.8

Q ss_pred             cEEEcCEEEEeecCccCC--------hh--hhhcCCcccCCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHH
Q 011351          292 STIDADTIVIGIGAKPTV--------SP--FERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVD  361 (488)
Q Consensus       292 ~~i~~D~vi~a~G~~p~~--------~~--~~~~gl~~~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~  361 (488)
                      +.+++|.++++++.+|..        ..  +...++..++|+|.||+++||+.|+|||+|||...+.          ...
T Consensus       148 ~~~~a~~v~i~~~~~~~~~~~~~~~~~~l~~~~~gv~~~~G~I~vde~~~T~~~~iyAvGDv~~~~~----------l~~  217 (238)
T d1aoga1         148 ERLETEHILLASGSWPHMPNGRSPRTKDLQLQNAGVMIKNGGVQVDEYSRTNVSNIYAIGDVTNRVM----------LTP  217 (238)
T ss_dssp             EEEEBSCEEECCCEEECCCCCEEECCGGGCGGGTTCCEETTEECCCTTCBCSSTTEEECGGGGTSCC----------CHH
T ss_pred             ccccccceeeecccccccccccccceeeecccccEEEEcCCeEEecCCeeeccCCEEEEEEecCCcc----------chh
Confidence            357888888877766543        22  3567888888999999999999999999999987643          344


Q ss_pred             HHHHHHHHHHHHHhcCCC
Q 011351          362 HARQSAQHCIKALLSAQT  379 (488)
Q Consensus       362 ~A~~~g~~~a~~i~~~~~  379 (488)
                      .|..+|+.+|++|+++.+
T Consensus       218 ~A~~eg~~aa~~i~g~~~  235 (238)
T d1aoga1         218 VAINEAAALVDTVFGTTP  235 (238)
T ss_dssp             HHHHHHHHHHHHHHSSSC
T ss_pred             hHHHHHHHHHHHHcCCCC
Confidence            589999999999998543

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.23  E-value=3.9e-12  Score=115.85  Aligned_cols=122  Identities=20%  Similarity=0.290  Sum_probs=75.4

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC-------CCCCCcc-----cc--CCCCCC-C------
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE-------RPALTKG-----YL--FPLDKK-P------  108 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~-------~~~l~~~-----~~--~~~~~~-~------  108 (488)
                      |++||+|||||+||++||..|+++|+   +|+|||+++.....       ++.....     +.  ...... .      
T Consensus         1 M~yDViIIGaG~aGl~aA~~la~~G~---~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (251)
T d2i0za1           1 MHYDVIVIGGGPSGLMAAIGAAEEGA---NVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSI   77 (251)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHH
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCC---cEEEEeCCCCCCcceeccCCcceecccccccchhhcccccchhhhhhhhhh
Confidence            47899999999999999999999988   89999998753200       0000000     00  000000 0      


Q ss_pred             ------------CCCCCcccccC-----C----CCCCCCHhHHHHCCCeEEeCCcEEEEeCCCc---EEEeCCCcEEEec
Q 011351          109 ------------ARLPGFHTCVG-----S----GGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYG  164 (488)
Q Consensus       109 ------------~~~~~~~~~~~-----~----~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~---~v~~~~g~~i~yd  164 (488)
                                  ..++......+     .    .....+.+.+++.+++++.+++|++|..++.   .+.+++++.+.+|
T Consensus        78 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~a~  157 (251)
T d2i0za1          78 FNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETN  157 (251)
T ss_dssp             SCHHHHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECS
T ss_pred             hhhHHHHHHHHhcCCccccccccceecccccHHHHHHHHHHHHHHcCCcccCCcEEEEEEEECCEEEEEEeCCCCeEecC
Confidence                        00000000000     0    0001122345678999999999999987654   3678899999999


Q ss_pred             cEEeccCCCC
Q 011351          165 SLIVATGCTA  174 (488)
Q Consensus       165 ~lVlAtG~~~  174 (488)
                      +||+|||...
T Consensus       158 ~vI~AtGg~S  167 (251)
T d2i0za1         158 HVVIAVGGKS  167 (251)
T ss_dssp             CEEECCCCSS
T ss_pred             eEEEccCCcc
Confidence            9999999764

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=99.23  E-value=4.4e-12  Score=109.42  Aligned_cols=108  Identities=21%  Similarity=0.257  Sum_probs=77.9

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (488)
                      -+||||||||++|+.+|.+|++.+. +.+|||||+++.+..  +.+........ .....            .......+
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~-~~~Vtlie~~~~~~~--~~~~~~~~~~~-~~~~~------------~~~~~~~~   65 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADP-SIEVTLIEPNTDYYT--CYLSNEVIGGD-RKLES------------IKHGYDGL   65 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCT-TSEEEEECSCSCEEC--STTHHHHHHTS-SCGGG------------GEECSHHH
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCC-CCcEEEEECCCcccc--ccccccccchh-hhhhh------------hhhhhhhc
Confidence            3799999999999999999999985 779999999875422  22221111110 00000            12233455


Q ss_pred             HHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCC
Q 011351          131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS  175 (488)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~  175 (488)
                      ...++.+.. ..+..++...+.+.+.+++.++||+||+|||..+.
T Consensus        66 ~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~i~~D~li~atG~~~~  109 (186)
T d1fcda1          66 RAHGIQVVH-DSATGIDPDKKLVKTAGGAEFGYDRCVVAPGIELI  109 (186)
T ss_dssp             HTTTEEEEC-CCEEECCTTTTEEEETTSCEEECSEEEECCCEEEC
T ss_pred             cccceeEee-eeeEeeeeccceeecccceeeccceEEEEeccccc
Confidence            667888876 47788888889999999999999999999998765

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.23  E-value=9.3e-12  Score=98.56  Aligned_cols=94  Identities=15%  Similarity=0.128  Sum_probs=74.4

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      .+++++|||||+.|+.+|..|++.|.   +|||+++.+...   |.+.+           .+           .....+.
T Consensus        20 ~p~~vvIiGgG~ig~E~A~~l~~~G~---~Vtlve~~~~~l---~~~d~-----------~~-----------~~~~~~~   71 (116)
T d1gesa2          20 LPERVAVVGAGYIGVELGGVINGLGA---KTHLFEMFDAPL---PSFDP-----------MI-----------SETLVEV   71 (116)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSS---TTSCH-----------HH-----------HHHHHHH
T ss_pred             CCCEEEEECCChhhHHHHHHhhcccc---EEEEEeecchhh---hhcch-----------hh-----------HHHHHHH
Confidence            35799999999999999999999987   899999886531   11100           00           1234677


Q ss_pred             HHHCCCeEEeCCcEEEEeCCC---cEEEeCCCcEEEeccEEeccC
Q 011351          130 YKEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGSLIVATG  171 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~---~~v~~~~g~~i~yd~lVlAtG  171 (488)
                      +++.|+++++++.|+.+....   .++++++|+++.+|.+++|||
T Consensus        72 l~~~GV~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          72 MNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             HHHHSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             HHHCCCEEEeCCEEEEEEEcCCcEEEEEECCCCEEEcCEEEEecC
Confidence            788999999999999987653   368889999999999999998

>d1q1ra3 d.87.1.1 (A:320-422) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.23  E-value=4.1e-11  Score=91.76  Aligned_cols=92  Identities=21%  Similarity=0.381  Sum_probs=76.4

Q ss_pred             CCCCCCCceeEeccccCCCCcceeeEEeeCCCC--cEEEEccCC-CcEEEEEEECCEEEEEEeecCChHHhhHHHHHHhc
Q 011351          380 HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--ETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARS  456 (488)
Q Consensus       380 ~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~--~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  456 (488)
                      +++..+|||||++|+..       +|++|...+  +++.+|+.+ .+|..+|+++|+++|++. .|.+.++..+++||..
T Consensus         2 p~~~~vP~FWSdQ~d~~-------lQ~~G~~~~~d~~v~rg~~~~~~f~~~y~~~~~lvav~~-vn~~~~~~~~r~li~~   73 (103)
T d1q1ra3           2 PRDEAAPWFWSDQYEIG-------LKMVGLSEGYDRIIVRGSLAQPDFSVFYLQGDRVLAVDT-VNRPVEFNQSKQIITD   73 (103)
T ss_dssp             CCCCCCCEEEEEETTEE-------EEEEECCTTCSEEEEEEETTTTEEEEEEEETTEEEEEEE-ESCHHHHHHHHHHHHT
T ss_pred             CCCCCCCcEeeecCCCe-------eEEEECCCCCceEEEecCCCCCeEEEEEEeCCeEEEEEE-eCCHHHHHHHHHHHHC
Confidence            35678999999999965       999998654  567788776 679999999999999985 8999999999999999


Q ss_pred             CCCCChhhhcCCC-cHHHHHHHHH
Q 011351          457 QPFVDKAKLQQAS-SVEEALEIAR  479 (488)
Q Consensus       457 ~~~~~~~~~~~~~-~~~~~~~~~~  479 (488)
                      +..++++.|.++. .+.+.++.+.
T Consensus        74 ~~~~~~~~L~D~~~~Lk~Ll~~~~   97 (103)
T d1q1ra3          74 RLPVEPNLLGDESVPLKEIIAAAK   97 (103)
T ss_dssp             TCCCCHHHHTCTTSCHHHHHHHHH
T ss_pred             CCCcCHHHhcCCCCCHHHHHHhhh
Confidence            9999999998774 5666655443

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.21  E-value=1.9e-11  Score=97.37  Aligned_cols=93  Identities=19%  Similarity=0.302  Sum_probs=73.3

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      ..++++|||||+.|+.+|..|++.|.   +|+|+++.+.....       .+      +...           .....++
T Consensus        29 ~~~~vvIIGgG~iG~E~A~~l~~~g~---~Vtli~~~~~~l~~-------~~------~~~~-----------~~~~~~~   81 (121)
T d1d7ya2          29 PQSRLLIVGGGVIGLELAATARTAGV---HVSLVETQPRLMSR-------AA------PATL-----------ADFVARY   81 (121)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSTTTT-------TS------CHHH-----------HHHHHHH
T ss_pred             cCCeEEEECcchhHHHHHHHhhcccc---eEEEEeeccccccc-------cC------CHHH-----------HHHHHHH
Confidence            45799999999999999999999987   89999988763110       00      0000           1234567


Q ss_pred             HHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccC
Q 011351          130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATG  171 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG  171 (488)
                      +++.||++++++.|+++..  ..++++||+++++|.+|+|+|
T Consensus        82 l~~~GV~i~~~~~v~~~~~--~~v~l~dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2          82 HAAQGVDLRFERSVTGSVD--GVVLLDDGTRIAADMVVVGIG  121 (121)
T ss_dssp             HHTTTCEEEESCCEEEEET--TEEEETTSCEEECSEEEECSC
T ss_pred             HHHCCcEEEeCCEEEEEeC--CEEEECCCCEEECCEEEEeeC
Confidence            7889999999999988764  468899999999999999998

>d1d7ya3 d.87.1.1 (A:309-405) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.18  E-value=1.3e-10  Score=88.07  Aligned_cols=84  Identities=23%  Similarity=0.342  Sum_probs=70.5

Q ss_pred             CCCCCCCceeEeccccCCCCcceeeEEeeCCCC--cEEE-EccCC-CcEEEEEEECCEEEEEEeecCChHHhhHHHHHHh
Q 011351          380 HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--ETIE-IGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLAR  455 (488)
Q Consensus       380 ~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~--~~~~-~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  455 (488)
                      .+|..+|||||++|+..       +|++|....  +++. .++.+ .+|..+|+++|+++|++. +|.+.++..+++||+
T Consensus         3 ~~y~~vP~FWSdQ~d~~-------iq~~G~~~~~~~~v~~~~~~~~~~f~~~y~~~g~lvgv~~-vn~~~~~~~~rrli~   74 (97)
T d1d7ya3           3 PGYAELPWYWSDQGALR-------IQVAGLASGDEEIVRGEVSLDAPKFTLIELQKGRIVGATC-VNNARDFAPLRRLLA   74 (97)
T ss_dssp             CCCCCCCEEEEEETTEE-------EEEEECSCCSEEEEEEECCSSSCEEEEEEEETTEEEEEEE-ESCHHHHHHHHHHHH
T ss_pred             CCCCCCCcEEeccCCCe-------eEEEecCCCCCEEEEeccCCCCCeEEEEEEeCCEEEEEEE-eCCHHHHHHHHHHHH
Confidence            47999999999999965       999998654  3344 34554 679999999999999985 889999999999999


Q ss_pred             cCCCCChhhhcCCCcH
Q 011351          456 SQPFVDKAKLQQASSV  471 (488)
Q Consensus       456 ~~~~~~~~~~~~~~~~  471 (488)
                      .+..++++.|.|+..-
T Consensus        75 ~~~~~~~~~LaD~~~~   90 (97)
T d1d7ya3          75 VGAKPDRAALADPATD   90 (97)
T ss_dssp             TTCCCCHHHHHSSCCH
T ss_pred             CCCCCCHHHhcCCCCC
Confidence            9999999999887554

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.18  E-value=2.4e-11  Score=98.57  Aligned_cols=96  Identities=17%  Similarity=0.299  Sum_probs=74.0

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHh
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (488)
                      ...++++|||||+.|+.+|..|++.|.   +|+|+|+.+.. +.     . .+      ....           .....+
T Consensus        33 ~~~k~v~VIGgG~iG~E~A~~l~~~g~---~Vtvie~~~~~-l~-----~-~~------~~~~-----------~~~~~~   85 (133)
T d1q1ra2          33 IADNRLVVIGGGYIGLEVAATAIKANM---HVTLLDTAARV-LE-----R-VT------APPV-----------SAFYEH   85 (133)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSST-TT-----T-TS------CHHH-----------HHHHHH
T ss_pred             ccCCEEEEECCchHHHHHHHHHHhhCc---ceeeeeecccc-cc-----c-cc------chhh-----------hhhhhh
Confidence            345899999999999999999999987   89999988763 11     0 00      0000           012456


Q ss_pred             HHHHCCCeEEeCCcEEEEeCCC-----cEEEeCCCcEEEeccEEeccC
Q 011351          129 WYKEKGIEMIYQDPVTSIDIEK-----QTLITNSGKLLKYGSLIVATG  171 (488)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~-----~~v~~~~g~~i~yd~lVlAtG  171 (488)
                      .+++.|+++++++.|+.++...     ..+.+++|+++++|.+|+|+|
T Consensus        86 ~~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2          86 LHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             HHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred             cccccccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence            6788999999999999987543     247789999999999999998

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.17  E-value=7.6e-11  Score=99.45  Aligned_cols=120  Identities=21%  Similarity=0.226  Sum_probs=86.9

Q ss_pred             CCCCCCCCCCcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCc------------------------
Q 011351          177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLD------------------------  232 (488)
Q Consensus       177 ~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~------------------------  232 (488)
                      .|++||.+.+++++..     +.+......+++++|||||++|+|+|..+.+.|.+                        
T Consensus         4 ~p~IpG~d~~~V~~a~-----d~L~~~~~~gkrVvVIGgG~~g~d~a~~~~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (162)
T d1ps9a2           4 TPPIDGIDHPKVLSYL-----DVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGL   78 (162)
T ss_dssp             CCCCBTTTSTTEEEHH-----HHHTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGGGB
T ss_pred             CCCCCCCCCCCeEEHH-----HHhhCccccCCceEEEcCchhHHHHHHHHHHcCCccceeHhhhhhhccCCcchhhhccc
Confidence            4678999999998742     22334456789999999999999999999988753                        


Q ss_pred             -------------EEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCC-cEEEcCE
Q 011351          233 -------------TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-STIDADT  298 (488)
Q Consensus       233 -------------v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g-~~i~~D~  298 (488)
                                   ++.+......+...++..........++..||+++.++.+.+++.  ++.  .+...+. ++++||.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~--~gv--~~~~~g~e~~i~aD~  154 (162)
T d1ps9a2          79 SPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDD--DGL--HVVINGETQVLAVDN  154 (162)
T ss_dssp             CTTCCCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEET--TEE--EEEETTEEEEECCSE
T ss_pred             ccccceeccccceEEEEEeccchhccccchhhhHHHHHHHhhCCeEEEeeeEEEEEcC--CCC--EEecCCeEEEEECCE
Confidence                         344444333333335555666778889999999999999999973  332  2233322 3589999


Q ss_pred             EEEeecC
Q 011351          299 IVIGIGA  305 (488)
Q Consensus       299 vi~a~G~  305 (488)
                      ||+|+|.
T Consensus       155 Vv~A~Gq  161 (162)
T d1ps9a2         155 VVICAGQ  161 (162)
T ss_dssp             EEECCCE
T ss_pred             EEECCCC
Confidence            9999995

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.17  E-value=3.9e-10  Score=102.23  Aligned_cols=160  Identities=21%  Similarity=0.302  Sum_probs=110.5

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccc------------------------------------------
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL------------------------------------------  246 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~------------------------------------------  246 (488)
                      .|+|||+|+.|+-+|..|++.|.+|+++++.+.+..+.                                          
T Consensus         4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (251)
T d2i0za1           4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNNEDI   83 (251)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCHHHH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcceeccCCcceecccccccchhhcccccchhhhhhhhhhhhhHHH
Confidence            48999999999999999999999999999874321100                                          


Q ss_pred             ------------------------cCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEe
Q 011351          247 ------------------------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG  302 (488)
Q Consensus       247 ------------------------~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a  302 (488)
                                              ....+.+.+.+.+++.||+++++++|+++..+ ++.+..+.+++|+++.||.||+|
T Consensus        84 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~-~~~~~~v~~~~g~~i~a~~vI~A  162 (251)
T d2i0za1          84 ITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYE-NGQTKAVILQTGEVLETNHVVIA  162 (251)
T ss_dssp             HHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETTCCEEECSCEEEC
T ss_pred             HHHHHhcCCccccccccceecccccHHHHHHHHHHHHHHcCCcccCCcEEEEEEEE-CCEEEEEEeCCCCeEecCeEEEc
Confidence                                    00124455667788899999999999999864 56777889999999999999999


Q ss_pred             ecCccCC---------hhhhhcCCcccC---CCEEeC-----CCCCCCCCCEEEEceecccCCccCCcccccccHHHHHH
Q 011351          303 IGAKPTV---------SPFERVGLNSSV---GGIQVD-----GQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQ  365 (488)
Q Consensus       303 ~G~~p~~---------~~~~~~gl~~~~---g~i~vd-----~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~  365 (488)
                      +|-....         .+++..++....   ..+.++     ....+..|++|++|++........|.     ....|..
T Consensus       163 tGg~S~p~~Gs~g~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~l~~~~~~gG~-----~~~~a~~  237 (251)
T d2i0za1         163 VGGKSVPQTGSTGDGYAWAEKAGHTITELFGGGVSVKEINPKEMSSKFTNGLYFCGEVLDIHGYTGGY-----NITSALV  237 (251)
T ss_dssp             CCCSSSGGGSCSSHHHHHHHHTTCCEEEEEEEEECGGGEETTTTEESSSBTEEECGGGBSCBCCTTTH-----HHHHHHH
T ss_pred             cCCccccccCCCcccchhcccceeeeeeeeecccCccccCchhHHHhcCCCcEeeeeEEEccCCcchH-----HHHHHHH
Confidence            9975422         256666665421   112221     11224679999999998654332222     2234555


Q ss_pred             HHHHHHHHH
Q 011351          366 SAQHCIKAL  374 (488)
Q Consensus       366 ~g~~~a~~i  374 (488)
                      .|+.++..+
T Consensus       238 ~G~~a~~~~  246 (251)
T d2i0za1         238 TGRIAGTTA  246 (251)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666665554

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.13  E-value=3.3e-11  Score=95.27  Aligned_cols=95  Identities=21%  Similarity=0.273  Sum_probs=70.7

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHh
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (488)
                      ..+++++|||||+.|+.+|..|++.|.   +|||+++.+...   |..        +.   ++           .....+
T Consensus        19 ~~p~~vvIiGgG~~G~E~A~~l~~~g~---~Vtlve~~~~il---~~~--------d~---~~-----------~~~l~~   70 (115)
T d1lvla2          19 ALPQHLVVVGGGYIGLELGIAYRKLGA---QVSVVEARERIL---PTY--------DS---EL-----------TAPVAE   70 (115)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHHTC---EEEEECSSSSSS---TTS--------CH---HH-----------HHHHHH
T ss_pred             cCCCeEEEECCCHHHHHHHHHHhhccc---ceEEEeeecccc---ccc--------cc---hh-----------HHHHHH
Confidence            345799999999999999999999987   899999886531   000        00   00           123467


Q ss_pred             HHHHCCCeEEeCCcEEEEeCCCcEEEeCCC--cEEEeccEEeccC
Q 011351          129 WYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATG  171 (488)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~~~v~~~~g--~~i~yd~lVlAtG  171 (488)
                      .+++.|++++++++|++++.....+...++  +++++|.+++|||
T Consensus        71 ~l~~~gV~i~~~~~V~~i~~~~~~~~~~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          71 SLKKLGIALHLGHSVEGYENGCLLANDGKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             HHHHHTCEEETTCEEEEEETTEEEEECSSSCCCEECCSCEEECCC
T ss_pred             HHHhhcceEEcCcEEEEEcCCeEEEEEcCCCeEEEEcCEEEEecC
Confidence            788899999999999999754443333333  4799999999998

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.12  E-value=1.4e-11  Score=115.45  Aligned_cols=113  Identities=19%  Similarity=0.238  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCC--cEEEcCEEEEeecCccCChhhhhcCCcc--------c
Q 011351          251 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSPFERVGLNS--------S  320 (488)
Q Consensus       251 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~--------~  320 (488)
                      +...+.+..++.|++++++++|++|+.++++ +..+...+|  ++++||.||+|+|......++++..-..        .
T Consensus       221 ~~~~~~~l~~~~g~~i~~~~~V~~I~~~~~~-~~v~~~~~~~~~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~  299 (347)
T d2ivda1         221 LQVLIDALAASLGDAAHVGARVEGLAREDGG-WRLIIEEHGRRAELSVAQVVLAAPAHATAKLLRPLDDALAALVAGIYN  299 (347)
T ss_dssp             THHHHHHHHHHHGGGEESSEEEEEEECC--C-CEEEEEETTEEEEEECSEEEECSCHHHHHHHHTTTCHHHHHHHHTCCB
T ss_pred             hHHHHHHHHHHhhcccccCCEEEEEEEeCCe-EEEEEEcCCeEEEEECCEEEECCCHHHHHHhccCCCHHHHHHhhccee
Confidence            3445555566679999999999999865443 332333344  4689999999998643323333221110        0


Q ss_pred             CCC---EEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 011351          321 VGG---IQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  375 (488)
Q Consensus       321 ~g~---i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~  375 (488)
                      .+.   +...+...++.|++|++||.....           .+..+..+|..+|+.|+
T Consensus       300 ~~~~~~~~~~~~~~~~~p~~~~~G~~~~g~-----------~~~~~~~~g~~~a~~~~  346 (347)
T d2ivda1         300 LGHLERVAAIDAALQRLPGLHLIGNAYKGV-----------GLNDCIRNAAQLADALV  346 (347)
T ss_dssp             TTHHHHHHHHHHHHHTSTTEEECSTTTSCC-----------SHHHHHHHHHHHHHHHC
T ss_pred             cCcccceecccccccCCCCEEEecccccCC-----------CHHHHHHHHHHHHHHhh
Confidence            111   111122235789999999976532           34557788888888775

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.12  E-value=5.8e-10  Score=89.15  Aligned_cols=100  Identities=18%  Similarity=0.292  Sum_probs=84.7

Q ss_pred             HHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCC
Q 011351          201 ISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD  280 (488)
Q Consensus       201 ~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~  280 (488)
                      ...+.++|+|+|||+|.+|+|.|..|.+...+|++++|++.+.   .++...+.+.+..+..+|.++.++.+.++..+ +
T Consensus        21 D~~~~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~v~~i~G~-~   96 (126)
T d1trba2          21 DGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR---AEKILIKRLMDKVENGNIILHTNRTLEEVTGD-Q   96 (126)
T ss_dssp             HGGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC---CCHHHHHHHHHHHHTSSEEEECSCEEEEEEEC-S
T ss_pred             chHHhCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccccc---chhHHHHHHHHhhcccceeEecceEEEEEECC-C
Confidence            3456789999999999999999999999999999999998764   36777788888888889999999999999853 4


Q ss_pred             CcEEEEEeCCC------cEEEcCEEEEeec
Q 011351          281 GRVAAVKLEDG------STIDADTIVIGIG  304 (488)
Q Consensus       281 ~~v~~v~l~~g------~~i~~D~vi~a~G  304 (488)
                      ..+.+|++.|.      +++++|-|++++|
T Consensus        97 ~~v~~v~l~~~~~~e~~~~l~~dgvFv~iG  126 (126)
T d1trba2          97 MGVTGVRLRDTQNSDNIESLDVAGLFVAIG  126 (126)
T ss_dssp             SSEEEEEEECCTTCCCCEEEECSEEEECSC
T ss_pred             CceEEEEEEECCCCceEEEEECCEEEEEeC
Confidence            55778887653      3699999999987

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.12  E-value=9.4e-11  Score=92.93  Aligned_cols=97  Identities=18%  Similarity=0.272  Sum_probs=73.3

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      .+++++|||||+.|+.+|..|.+......+|+++++.+...   |.+.        .   .+           .....+.
T Consensus        17 ~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il---~~~d--------~---~~-----------~~~~~~~   71 (117)
T d1feca2          17 APKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL---RGFD--------S---EL-----------RKQLTEQ   71 (117)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS---TTSC--------H---HH-----------HHHHHHH
T ss_pred             cCCeEEEECCChHHHHHHHHhHhhcccccccceeccccccc---cccc--------c---hh-----------hHHHHHH
Confidence            35799999999999999998877643234899999875421   0000        0   00           1234667


Q ss_pred             HHHCCCeEEeCCcEEEEeCCC---cEEEeCCCcEEEeccEEeccC
Q 011351          130 YKEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGSLIVATG  171 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~---~~v~~~~g~~i~yd~lVlAtG  171 (488)
                      +++.|+++++++.|+++....   ..+++++|+++++|.+++|||
T Consensus        72 l~~~GI~v~~~~~v~~i~~~~~g~~~v~~~~g~~i~~D~Vi~a~G  116 (117)
T d1feca2          72 LRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIG  116 (117)
T ss_dssp             HHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             HhhCcEEEEcCCEEEEEEECCCCEEEEEECCCCEEEcCEEEEecC
Confidence            889999999999999997543   368899999999999999999

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.10  E-value=1.1e-10  Score=92.62  Aligned_cols=96  Identities=17%  Similarity=0.315  Sum_probs=72.9

Q ss_pred             CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCH
Q 011351           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP  127 (488)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (488)
                      ...+++++|||||+.|+..|..|++.|.   +|++++..+...   |....           .+           .....
T Consensus        19 ~~~p~~i~IiG~G~ig~E~A~~l~~~G~---~Vtiv~~~~~ll---~~~d~-----------ei-----------~~~l~   70 (119)
T d3lada2          19 QNVPGKLGVIGAGVIGLELGSVWARLGA---EVTVLEAMDKFL---PAVDE-----------QV-----------AKEAQ   70 (119)
T ss_dssp             SSCCSEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSSS---TTSCH-----------HH-----------HHHHH
T ss_pred             ccCCCeEEEECCChHHHHHHHHHHHcCC---ceEEEEeecccC---Ccccc-----------hh-----------HHHHH
Confidence            3456899999999999999999999987   899999876531   11100           00           12346


Q ss_pred             hHHHHCCCeEEeCCcEEEEeCCCc--EEEeCCC---cEEEeccEEeccC
Q 011351          128 EWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSG---KLLKYGSLIVATG  171 (488)
Q Consensus       128 ~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g---~~i~yd~lVlAtG  171 (488)
                      +++++.|+++++++++++++..+.  ++++.++   +++.+|++++|+|
T Consensus        71 ~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          71 KILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             HHHHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred             HHHHhcCceeecCcEEEEEEEeCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence            778899999999999999987654  4555443   5799999999998

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.07  E-value=1.7e-12  Score=115.62  Aligned_cols=175  Identities=15%  Similarity=0.144  Sum_probs=94.6

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC---CCCCCCCccccCCC-----CCCCCCCCCcccccC--
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP---YERPALTKGYLFPL-----DKKPARLPGFHTCVG--  119 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~---~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~--  119 (488)
                      +++||+|||||+||++||.++++.|.   +|+|||++..-.   +..+..++.+....     ........++.....  
T Consensus         1 k~yDvvVIG~G~aG~~aA~~a~~~G~---kV~iiE~~~~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~   77 (217)
T d1gesa1           1 KHYDYIAIGGGSGGIASINRAAMYGQ---KCALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKF   77 (217)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTC---CEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEE
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCC---EEEEEeccCcCCeEecccccccccchhhHHHHHHHHhhhhhcCccCCcccc
Confidence            36899999999999999999999987   899999864210   00000000000000     000000000000000  


Q ss_pred             -------------CCCCCCCHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCC
Q 011351          120 -------------SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP  186 (488)
Q Consensus       120 -------------~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~  186 (488)
                                   ..........+++.++++....... .+  ...+. .+++.+.++++++|||+.|. .|..|+.+.-
T Consensus        78 ~~~~~~~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~-~~--~~~~~-~~~~~~~~~~~iiatG~~p~-ip~ip~~~~l  152 (217)
T d1gesa1          78 NWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARF-VD--AKTLE-VNGETITADHILIATGGRPS-HPREPANDNI  152 (217)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEE-EE--TTEEE-ETTEEEEEEEEEECCCEEEC-CCEEESCTTS
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeeccc-ce--eeeec-CCCceeeeeeeeeecCcccc-CCCCCCcCCc
Confidence                         0000011234566789988764432 22  22222 36677999999999999876 4554442211


Q ss_pred             -----cEEEecC-HHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEE
Q 011351          187 -----GVHYIRD-VADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT  234 (488)
Q Consensus       187 -----gv~~~~~-~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~  234 (488)
                           ++.+... ....+...  ....+++.++|+|.+|+|+|..+.+.|.+|+
T Consensus       153 ~l~~~gv~~~~~~~i~~d~~~--~t~~~~i~~iG~g~~g~ela~~~~~~G~~v~  204 (217)
T d1gesa1         153 NLEAAGVKTNEKGYIVVDKYQ--NTNIEGIYAVGDNTGAVELTPVAVAAGRRLS  204 (217)
T ss_dssp             CHHHHTCCBCTTSCBCCCTTS--BCSSTTEEECSGGGTSCCCHHHHHHHHHHHH
T ss_pred             ccccccEEEcCCccEeeCchh--ccCCCcEEEECCCccHHHHHHHHHHHHHHHH
Confidence                 1111100 00000000  0134689999999999999999988887764

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.06  E-value=1.1e-09  Score=101.10  Aligned_cols=70  Identities=16%  Similarity=0.399  Sum_probs=56.6

Q ss_pred             CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcCCcccC
Q 011351          248 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSV  321 (488)
Q Consensus       248 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~  321 (488)
                      +..+...+.+.+++.|++++.++.|++++..+ +.+ .|.+++| ++.||.||+|+|...+ .+++.+|+....
T Consensus       149 p~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~-~~v-~V~t~~g-~i~a~~VViAaG~~s~-~l~~~lg~~~~~  218 (281)
T d2gf3a1         149 SENCIRAYRELAEARGAKVLTHTRVEDFDISP-DSV-KIETANG-SYTADKLIVSMGAWNS-KLLSKLNLDIPD  218 (281)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEECS-SCE-EEEETTE-EEEEEEEEECCGGGHH-HHGGGGTEECCT
T ss_pred             ccccccccccccccccccccCCcEEEEEEEEC-CEE-EEEECCc-EEEcCEEEECCCCcch-hhHHhcCCcccc
Confidence            44677788888999999999999999999754 444 6888887 5999999999998765 677888876543

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.06  E-value=4.4e-14  Score=129.76  Aligned_cols=33  Identities=27%  Similarity=0.562  Sum_probs=31.0

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      ||++|||||+||++||.++++.|.   +|+|||++.
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~---~V~liE~~~   34 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNA---KVALVEKSR   34 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCC---eEEEEecCC
Confidence            699999999999999999999987   899999865

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.05  E-value=3.1e-10  Score=89.73  Aligned_cols=96  Identities=18%  Similarity=0.333  Sum_probs=73.2

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      ..++++|||||+.|+.+|..|.+.+..+.+||||++.+...   |..        +.   .+           .....+.
T Consensus        19 ~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL---~~~--------d~---~~-----------~~~l~~~   73 (117)
T d1aoga2          19 PPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL---RGF--------DH---TL-----------REELTKQ   73 (117)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS---TTS--------CH---HH-----------HHHHHHH
T ss_pred             cCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh---ccc--------ch---HH-----------HHHHHHH
Confidence            35799999999999999999888876456899999876421   000        00   00           1235677


Q ss_pred             HHHCCCeEEeCCcEEEEeCCC---cEEEeCCCcEEEeccEEecc
Q 011351          130 YKEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGSLIVAT  170 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~---~~v~~~~g~~i~yd~lVlAt  170 (488)
                      +++.|+++++++.+++++...   ..+++++|+++++|.+++|.
T Consensus        74 l~~~GV~v~~~~~v~~ie~~~~~~~~v~~~~G~~i~~D~Vi~AI  117 (117)
T d1aoga2          74 LTANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAI  117 (117)
T ss_dssp             HHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECS
T ss_pred             HHhcCcEEEcCCEEEEEEEcCCCeEEEEECCCcEEEeCEEEEeC
Confidence            889999999999999997532   46889999999999999983

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=2.2e-10  Score=109.52  Aligned_cols=115  Identities=13%  Similarity=0.120  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCcc--------CCh-hhhhcCCc-ccC
Q 011351          252 AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP--------TVS-PFERVGLN-SSV  321 (488)
Q Consensus       252 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p--------~~~-~~~~~gl~-~~~  321 (488)
                      .....+.+++.|+++++++.|++|... ++.+ .|++.||++++||.||+|++..-        ... ...+..-. ...
T Consensus       210 ~~~~~~l~~~~g~~i~~~~~v~~I~~~-~~~v-~v~~~~g~~~~ad~vI~a~p~~~~~~~~~~p~l~~~~~~~~~~~~~~  287 (383)
T d2v5za1         210 GQVSERIMDLLGDRVKLERPVIYIDQT-RENV-LVETLNHEMYEAKYVISAIPPTLGMKIHFNPPLPMMRNQMITRVFPP  287 (383)
T ss_dssp             HHHHHHHHHHHGGGEEESCCEEEEECS-SSSE-EEEETTSCEEEESEEEECSCGGGGGGSEEESCCCHHHHHHTTSCCCT
T ss_pred             hHHHHHHHHHcCCeEEecCcceEEEec-CCeE-EEEECCCCEEECCEEEECCCHHHHhhCccCCCCCHHHHHHHHHhccC
Confidence            334455567789999999999999865 4444 58899999999999999976421        110 01111000 011


Q ss_pred             CC-EEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 011351          322 GG-IQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  376 (488)
Q Consensus       322 g~-i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~  376 (488)
                      +. -...........+|+.+|+......        ...+..|..+|+.+|..++.
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~--------~g~~~ga~~~g~~~a~~i~~  335 (383)
T d2v5za1         288 GILTQYGRVLRQPVDRIYFAGTETATHW--------SGYMEGAVEAGERAAREILH  335 (383)
T ss_dssp             THHHHHGGGTTCCBTTEEECSGGGCSSS--------TTSHHHHHHHHHHHHHHHHH
T ss_pred             CccchhhhhhcCCcCceEeccccccccC--------CcchHHHHHHHHHHHHHHHH
Confidence            11 1122233445567998997654322        12455677888888877653

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.02  E-value=2.1e-09  Score=101.26  Aligned_cols=167  Identities=19%  Similarity=0.226  Sum_probs=106.0

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc------------------------------------------
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------------  245 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~------------------------------------------  245 (488)
                      -.|+|||+|..|+-+|..|++.|.+|.++++.+..-..                                          
T Consensus        24 ~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~gG~s~~s~Ggi~~~~~~~~~~~~~~d~~~~~~~d~~~~~~~~~d~  103 (322)
T d1d4ca2          24 TDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNINDP  103 (322)
T ss_dssp             CSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCH
T ss_pred             ceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCCcccccCchhhhhcccCCCHHHHHHHHHhccccccCH
Confidence            35999999999999999999999999999975321000                                          


Q ss_pred             ---------------------------------------------ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCC
Q 011351          246 ---------------------------------------------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD  280 (488)
Q Consensus       246 ---------------------------------------------~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~  280 (488)
                                                                   .....+...+.+.+.+.|++++++++++++..+++
T Consensus       104 ~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv~i~~~t~v~~li~d~~  183 (322)
T d1d4ca2         104 ELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDAS  183 (322)
T ss_dssp             HHHHHHHHTHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCSHHHHHHHHHHHHHHTTCEEETTEEEEEEECCSS
T ss_pred             HHhhhhhhhhhhhhhhhhhhcccccccccccccccccccccccccchhHHHHHHHHHHHHhcCceEEEeeeccccccccc
Confidence                                                         00112344555666788999999999999987777


Q ss_pred             CcEEEEEeCC--Cc--EEEcCEEEEeecCcc-CChh--------------------------hhhcCCcc---cCCCEEe
Q 011351          281 GRVAAVKLED--GS--TIDADTIVIGIGAKP-TVSP--------------------------FERVGLNS---SVGGIQV  326 (488)
Q Consensus       281 ~~v~~v~l~~--g~--~i~~D~vi~a~G~~p-~~~~--------------------------~~~~gl~~---~~g~i~v  326 (488)
                      ++|.+|...+  +.  .+.++.||+|+|--. |.++                          ....|...   +.+++.+
T Consensus       184 G~V~Gv~~~~~~~~~~~i~Ak~VIlAtGG~~~n~~~~~~~~~~~~~~~~~~~~~~tGdg~~~a~~aGa~~~~~e~~~~~~  263 (322)
T d1d4ca2         184 GKVTGVLVKGEYTGYYVIKADAVVIAAGGFAKNNERVSKYDPKLKGFKATNHPGATGDGLDVALQAGAATRDLEMGGLVI  263 (322)
T ss_dssp             SCCCEEEEEETTTEEEEEECSEEEECCCCCTTCHHHHHHHCGGGTTCCBCSCTTCSSHHHHHHHHTTBCEECTTCCEECC
T ss_pred             ccccceEEEeecccEEEEeCCeEEEcCCCcccCHHHHHhhCcccccccccCCCCccCHHHHHHHHcCCcceecccceEEe
Confidence            8887776543  22  589999999998322 1111                          11222221   2233333


Q ss_pred             -------CCCCCCCCCCEEEEceecccCC--ccCCcccccccHHHHHHHHHHHHHHH
Q 011351          327 -------DGQFRTRMPGIFAIGDVAAFPL--KMYDRTARVEHVDHARQSAQHCIKAL  374 (488)
Q Consensus       327 -------d~~~~t~~~~Ifa~GD~a~~~~--~~~~~~~~~~~~~~A~~~g~~~a~~i  374 (488)
                             ++..+|.+|+|||+|+|+..-.  ...|...-.+..-.++..|+.+|++.
T Consensus       264 ~~~~~~~~~~~~~~v~Glya~Ge~~~gvhG~nrlg~~~~~e~~v~g~~ag~~aa~~~  320 (322)
T d1d4ca2         264 DTKAEVKSEKTGKPITGLYAAGEVTGGVHGANRLGGNAISDIVTYGRIAGASAAKFA  320 (322)
T ss_dssp             CTTCEEEBTTTSSEEEEEEECGGGBCSSSTTSCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCceEEEECCCCCEeCceEEchhhcCCccccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence                   3445577899999999985321  11232222333334556666666543

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.00  E-value=1.8e-10  Score=107.08  Aligned_cols=117  Identities=20%  Similarity=0.246  Sum_probs=75.9

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC----CC-CCCC----c-cccCCCC-------CCCCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY----ER-PALT----K-GYLFPLD-------KKPARL  111 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~----~~-~~l~----~-~~~~~~~-------~~~~~~  111 (488)
                      +...||+|||||++||++|.+|++.|+   +++|+|+.+....    ++ |...    . .+.....       .....+
T Consensus         5 ~~~~dV~IIGAG~sGl~~a~~L~~~G~---~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~~~~~~~~~   81 (298)
T d1w4xa1           5 PEEVDVLVVGAGFSGLYALYRLRELGR---SVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERY   81 (298)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSS
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCC---CEEEEEcCCCcccccccCCCCCceeccccccccccccccccCCCCCcccc
Confidence            356899999999999999999999988   7999999875431    11 1110    0 0000000       000000


Q ss_pred             CCcccccCCCCCCCCHhHHHHCCC--eEEeCCcEEEEeC--CC--cEEEeCCCcEEEeccEEeccCCC
Q 011351          112 PGFHTCVGSGGERQTPEWYKEKGI--EMIYQDPVTSIDI--EK--QTLITNSGKLLKYGSLIVATGCT  173 (488)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~v~~id~--~~--~~v~~~~g~~i~yd~lVlAtG~~  173 (488)
                      +     .+.+...++.++.+++++  .++++++|+++..  +.  -+|.+.++.++.+|.||+|||..
T Consensus        82 p-----~~~e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~l  144 (298)
T d1w4xa1          82 A-----SQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQL  144 (298)
T ss_dssp             C-----BHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSC
T ss_pred             C-----ccchHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeeccc
Confidence            0     001111233455667787  5899999999863  22  27888899999999999999964

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=4.2e-10  Score=91.70  Aligned_cols=94  Identities=19%  Similarity=0.288  Sum_probs=71.9

Q ss_pred             CCeEEEEcCchHHHHHHHHHHH----cCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVE----HGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQT  126 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~----~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (488)
                      .++++|||||+.|+.+|..|++    .|.   +|++|++++...      +.  .+     +..+           ....
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~---~Vt~i~~~~~~l------~~--~~-----~~~~-----------~~~~   89 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGT---EVIQLFPEKGNM------GK--IL-----PEYL-----------SNWT   89 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTC---EEEEECSSSSTT------TT--TS-----CHHH-----------HHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCC---EEEEecccccCC------cc--cC-----CHHH-----------HHHH
Confidence            5689999999999999999864    454   899999876531      00  00     0000           1234


Q ss_pred             HhHHHHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccC
Q 011351          127 PEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATG  171 (488)
Q Consensus       127 ~~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG  171 (488)
                      .+.+++.|+++++++.|.+++.++.  .+++++|+++.+|.+|+|+|
T Consensus        90 ~~~l~~~GV~~~~~~~V~~i~~~~~~~~v~l~~G~~i~aD~Vi~A~G  136 (137)
T d1m6ia2          90 MEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVG  136 (137)
T ss_dssp             HHHHHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCC
T ss_pred             HHHHHhCCcEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEEeec
Confidence            5678889999999999999987654  68889999999999999999

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.98  E-value=4.1e-10  Score=89.76  Aligned_cols=90  Identities=19%  Similarity=0.294  Sum_probs=69.8

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (488)
                      .++++|||||+.|+.+|..|++.|.   +|||+++.+...    ++..           .+           .....+++
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~---~Vtlv~~~~~l~----~~d~-----------~~-----------~~~~~~~l   82 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGY---HVKLIHRGAMFL----GLDE-----------EL-----------SNMIKDML   82 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTC---EEEEECSSSCCT----TCCH-----------HH-----------HHHHHHHH
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccc---eEEEEecccccc----CCCH-----------HH-----------HHHHHHHH
Confidence            4789999999999999999999987   899999876531    0110           00           12346778


Q ss_pred             HHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCC
Q 011351          131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGC  172 (488)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~  172 (488)
                      ++.|+++++++++.+++.+.  + +.+++.+++|.+|+|+|.
T Consensus        83 ~~~GV~~~~~~~v~~~~~~~--v-~~~~~~i~~D~vi~a~Gv  121 (122)
T d1xhca2          83 EETGVKFFLNSELLEANEEG--V-LTNSGFIEGKVKICAIGI  121 (122)
T ss_dssp             HHTTEEEECSCCEEEECSSE--E-EETTEEEECSCEEEECCE
T ss_pred             HHCCcEEEeCCEEEEEeCCE--E-EeCCCEEECCEEEEEEEe
Confidence            88999999999999886543  3 457778999999999994

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.98  E-value=9.2e-10  Score=104.34  Aligned_cols=40  Identities=13%  Similarity=0.263  Sum_probs=34.5

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   89 (488)
                      +.+++|+|||||+|||+||..|++.+. ..+|+|+|+++..
T Consensus         2 ~~~KrVaIIGaG~sGl~~A~~L~~~~~-~~~v~vfEk~~~i   41 (335)
T d2gv8a1           2 PTIRKIAIIGAGPSGLVTAKALLAEKA-FDQVTLFERRGSP   41 (335)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHTTTC-CSEEEEECSSSSS
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHHhCC-CCCEEEEECCCCC
Confidence            346899999999999999999998774 4589999999764

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.98  E-value=5e-10  Score=89.28  Aligned_cols=95  Identities=16%  Similarity=0.205  Sum_probs=71.6

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHh
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (488)
                      ...++|+|||||+.|+.+|..|++.|.   +||+||+.+...      +. ++.      ..+           .....+
T Consensus        28 ~~~k~vvViGgG~iG~E~A~~l~~~g~---~Vtlie~~~~~l------~~-~~d------~~~-----------~~~~~~   80 (123)
T d1nhpa2          28 PEVNNVVVIGSGYIGIEAAEAFAKAGK---KVTVIDILDRPL------GV-YLD------KEF-----------TDVLTE   80 (123)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSTT------TT-TCC------HHH-----------HHHHHH
T ss_pred             cCCCEEEEECChHHHHHHHHHhhccce---EEEEEEecCccc------cc-ccc------hhh-----------HHHHHH
Confidence            345799999999999999999999987   899999886531      00 000      000           123456


Q ss_pred             HHHHCCCeEEeCCcEEEEeCCCc-EEEeCCCcEEEeccEEecc
Q 011351          129 WYKEKGIEMIYQDPVTSIDIEKQ-TLITNSGKLLKYGSLIVAT  170 (488)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~~-~v~~~~g~~i~yd~lVlAt  170 (488)
                      ++++.|+++++++.+.+++.+++ ...+.+|+++++|.+|+|.
T Consensus        81 ~l~~~gv~~~~~~~v~~i~~~~~~~~v~~dg~~i~~D~vi~aI  123 (123)
T d1nhpa2          81 EMEANNITIATGETVERYEGDGRVQKVVTDKNAYDADLVVVAV  123 (123)
T ss_dssp             HHHTTTEEEEESCCEEEEECSSBCCEEEESSCEEECSEEEECS
T ss_pred             HhhcCCeEEEeCceEEEEEcCCCEEEEEeCCCEEECCEEEEEC
Confidence            77888999999999999987654 3446788889999999983

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=98.97  E-value=1.8e-10  Score=105.99  Aligned_cols=45  Identities=24%  Similarity=0.287  Sum_probs=36.4

Q ss_pred             HHHHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCC
Q 011351          129 WYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTA  174 (488)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~  174 (488)
                      .+++.|++++.+++|+.|+.+++  .|.+++| ++.+|+||+|+|...
T Consensus       160 ~~~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~vV~AaG~~s  206 (276)
T d1ryia1         160 AAKMLGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVWS  206 (276)
T ss_dssp             HHHHTTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGGT
T ss_pred             HHHHcCCEEecceEEEeEEeecceEEEecCCe-EEEcCEEEECCCccH
Confidence            34678999999999999987654  5667666 589999999999754

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.97  E-value=2.3e-09  Score=92.09  Aligned_cols=112  Identities=29%  Similarity=0.434  Sum_probs=83.4

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (488)
                      ..+|||||||++|+.+|..|++.|. +..|+++++++..++.+..+...+...... ...           .........
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~-~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----------~~~~~~~~~   69 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGW-EGNIRLVGDATVIPHHLPPLSKAYLAGKAT-AES-----------LYLRTPDAY   69 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSCCSCCBCSGGGGTTTTTTCSC-SGG-----------GBSSCHHHH
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCC-ceEEEEecCccccchhhhHHHHHHHHhhhh-hhh-----------hhhhhhhhh
Confidence            5799999999999999999999987 556777777777666654443322211111 100           123445667


Q ss_pred             HHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCC
Q 011351          131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS  175 (488)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~  175 (488)
                      ......+..+..+..++.+...+...++.++.+|.+++++|..+.
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~i~~d~~i~~~G~~~~  114 (185)
T d1q1ra1          70 AAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPL  114 (185)
T ss_dssp             HHTTEEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEEE
T ss_pred             cccceeeeccceeeeecccccEEEeeceeEEEeeeeeeeeecccC
Confidence            778888888888999999999999999999999999999998654

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.95  E-value=9.2e-10  Score=86.75  Aligned_cols=92  Identities=15%  Similarity=0.213  Sum_probs=70.4

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (488)
                      .++|+|||||+.|+.+|..|++.|.   +|+|+++.+...   +.+        +.   .+           .....+.+
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~---~Vtlv~~~~~il---~~~--------d~---~~-----------~~~~~~~l   73 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGI---DSYIFARGNRIL---RKF--------DE---SV-----------INVLENDM   73 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTC---EEEEECSSSSSC---TTS--------CH---HH-----------HHHHHHHH
T ss_pred             CCEEEEECCchHHHHHHHHHHhccc---cceeeehhcccc---ccc--------cH---HH-----------HHHHHHHH
Confidence            5799999999999999999999887   899999876531   000        00   00           12345677


Q ss_pred             HHCCCeEEeCCcEEEEeCCC---cEEEeCCCcEE-EeccEEecc
Q 011351          131 KEKGIEMIYQDPVTSIDIEK---QTLITNSGKLL-KYGSLIVAT  170 (488)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~---~~v~~~~g~~i-~yd~lVlAt  170 (488)
                      ++.|+++++++.|++++...   .++++.+|+.+ .||.|++|.
T Consensus        74 ~~~gV~i~~~~~v~~i~~~~~~~~~v~~~~G~~~~~~D~Vi~AI  117 (117)
T d1onfa2          74 KKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCV  117 (117)
T ss_dssp             HHTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECC
T ss_pred             HhCCCEEEECCEEEEEEEcCCCeEEEEECCCCEEEeCCEEEEeC
Confidence            88999999999999997432   36888999877 589999983

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.94  E-value=2.7e-09  Score=97.05  Aligned_cols=138  Identities=22%  Similarity=0.370  Sum_probs=87.4

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc----------------------------------ccC------
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------------------------------LFT------  248 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~----------------------------------~~~------  248 (488)
                      .++|||+|+.|+.+|..+++.|.+|.++++.. +-..                                  .++      
T Consensus         3 DviVIG~G~aG~~aA~~aa~~G~~V~liE~~~-~GGtc~n~gciPsK~l~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~   81 (259)
T d1onfa1           3 DLIVIGGGSGGMAAARRAARHNAKVALVEKSR-LGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLPLLVE   81 (259)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-TTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHHHHHH
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCeEEEEecCC-CCCeEEeeCCcchHHHHhhhhcccchhccccccccchhhhhhhhHHh
Confidence            37999999999999999999999999999752 1100                                  000      


Q ss_pred             ------HHHHHHHHHHHHHcCcEEEcCCe-EE-----EEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC-----Chh
Q 011351          249 ------PSLAQRYEQLYQQNGVKFVKGAS-IK-----NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT-----VSP  311 (488)
Q Consensus       249 ------~~~~~~~~~~l~~~GV~v~~~~~-v~-----~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~-----~~~  311 (488)
                            ..+.+.+...+++.||+++.+.- +.     .+...++.........+++++.+|.|++|||.+|.     .+.
T Consensus        82 ~~~~~i~~~~~~~~~~l~~~gV~vi~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~i~a~~iiIATGs~P~~~~~~~~~  161 (259)
T d1onfa1          82 RRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVGRSPDTEN  161 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC--------------------------CBSSEEECCCCCBCCBCCTTTT
T ss_pred             hhheeeeccccchhhhcccccceEEeeecccccccccccccceeccccccCccceEEEeeeeEEEecCCCCccccccccc
Confidence                  11233355667889999988641 11     11100010000111223457999999999999983     222


Q ss_pred             --hhhcCCcccCCCEEeCCCCCCCCCCEEEEceecccC
Q 011351          312 --FERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFP  347 (488)
Q Consensus       312 --~~~~gl~~~~g~i~vd~~~~t~~~~Ifa~GD~a~~~  347 (488)
                        +++.++.++++.+.+|+..+|.+.++|++||++...
T Consensus       162 ~~l~~~~i~ts~~~~~~d~~~~t~Vig~gaiGdv~~~~  199 (259)
T d1onfa1         162 LKLEKLNVETNNNYIVVDENQRTSVNNIYAVGDCCMVK  199 (259)
T ss_dssp             SSCTTTTCCBSSSCEEECTTCBCSSSSEEECSTTEEEC
T ss_pred             cccccceeeecccccccccCCceeEeeEEEEEEeeehh
Confidence              345555567788999999999999999999998743

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.94  E-value=7.9e-10  Score=96.04  Aligned_cols=134  Identities=20%  Similarity=0.226  Sum_probs=87.8

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCcCccc--------ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEE
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLE  276 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~-~v~lv~~~~~~l~~--------~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~  276 (488)
                      .+++|+|||+|++|+++|..|+++|. +|+++++.+.+...        ...............+.+..+.....+....
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   82 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSENE   82 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBSTTS
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchhhhhccccccccccccchhhhhhccceeEEeeEEeccce
Confidence            47899999999999999999999998 59999999876542        1233444555556666778877765542211


Q ss_pred             eCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChh--hh-h-cCCcc-cCCCEEeC-CCCCCCCCCEEEEceecccCC
Q 011351          277 AGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FE-R-VGLNS-SVGGIQVD-GQFRTRMPGIFAIGDVAAFPL  348 (488)
Q Consensus       277 ~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~--~~-~-~gl~~-~~g~i~vd-~~~~t~~~~Ifa~GD~a~~~~  348 (488)
                               ..+.+..+..+|.+++++|..+....  .. . ..... ..+....+ ..++|+.+.+|++||++..++
T Consensus        83 ---------~~~~~~~~~~~~~~~ia~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~vigg~~  151 (196)
T d1gtea4          83 ---------ITLNTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMAN  151 (196)
T ss_dssp             ---------BCHHHHHHTTCCEEEECCCCCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBCSSTTEEECSGGGCSCC
T ss_pred             ---------eeeehhhccccceeeEEeccccCCccccccccccccccccccceeccccccCCCcccccccccccCCcc
Confidence                     11222234568899999997543322  11 1 11111 12344444 468889999999999987543

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.94  E-value=2.7e-10  Score=106.89  Aligned_cols=35  Identities=31%  Similarity=0.410  Sum_probs=32.3

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  241 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~  241 (488)
                      +|+|+|||+|+.|+-+|..|++.|.+|++++++++
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~   35 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGK   35 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            58999999999999999999999999999997643

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.93  E-value=6.6e-09  Score=82.75  Aligned_cols=107  Identities=25%  Similarity=0.379  Sum_probs=81.2

Q ss_pred             CcEEEecCHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcE
Q 011351          186 PGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK  265 (488)
Q Consensus       186 ~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~  265 (488)
                      .|+.+.      ......+.++|+|+|||+|.+|+|.|..|.+...+|++++|++.+..   .+...+   +..+..+|+
T Consensus        15 kGV~yc------a~cD~~~~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~~---~~~~~~---~~~~~~~I~   82 (126)
T d1fl2a2          15 KGVTYC------PHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA---DQVLQD---KLRSLKNVD   82 (126)
T ss_dssp             TTEESC------HHHHGGGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCS---CHHHHH---HHHTCTTEE
T ss_pred             CCEEEE------EecChhhcCCceEEEEeCCHHHHHHHHhhhccCCceEEEeccccccc---cccccc---cccccccee
Confidence            466654      22334567899999999999999999999999999999999987643   333222   233335799


Q ss_pred             EEcCCeEEEEEeCCCCcEEEEEeCC---C--cEEEcCEEEEeecC
Q 011351          266 FVKGASIKNLEAGSDGRVAAVKLED---G--STIDADTIVIGIGA  305 (488)
Q Consensus       266 v~~~~~v~~i~~~~~~~v~~v~l~~---g--~~i~~D~vi~a~G~  305 (488)
                      +++++++.++..+ ++.+.++++.+   |  +++++|.++++.|.
T Consensus        83 v~~~~~v~~i~G~-~~~v~~v~l~~~~tge~~~l~vdgvFv~IGl  126 (126)
T d1fl2a2          83 IILNAQTTEVKGD-GSKVVGLEYRDRVSGDIHNIELAGIFVQIGL  126 (126)
T ss_dssp             EESSEEEEEEEES-SSSEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred             EEcCcceEEEEcc-ccceeeEEEEECCCCCEEEEECCEEEEEeCC
Confidence            9999999999853 45677787754   4  36999999999883

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.93  E-value=1.5e-08  Score=97.30  Aligned_cols=117  Identities=18%  Similarity=0.263  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCC---------------CcEEEcCEEEEeecCccCC--hhhhh
Q 011351          252 AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---------------GSTIDADTIVIGIGAKPTV--SPFER  314 (488)
Q Consensus       252 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~---------------g~~i~~D~vi~a~G~~p~~--~~~~~  314 (488)
                      ...+.+..++.|+.+..+..+.++...+++.+..+...+               +....++..+++.|.+...  ++++.
T Consensus       144 ~~~l~~~Ae~~g~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~~G~l~k~li~~  223 (380)
T d2gmha1         144 VSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLYKK  223 (380)
T ss_dssp             HHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCHHHHHHHHH
T ss_pred             HHHHHHHHhhccceeeeecceeeeeeccCCceeecccccccccccccccccccccccccccEEEEeeeCCCcchHHHHhh
Confidence            334555567777888888777777765555554433321               2346688889998876532  12333


Q ss_pred             cCCccc---CCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 011351          315 VGLNSS---VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  375 (488)
Q Consensus       315 ~gl~~~---~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~  375 (488)
                      ..+...   .+++.-  --+...+++..+||.|++-++..+.     -+..|+..|+.||+.+.
T Consensus       224 ~~l~~~~~~~~G~~s--ip~l~~~G~lLVGDAAG~vnP~~g~-----GI~~Am~SG~lAAeai~  280 (380)
T d2gmha1         224 FDLRANCEPQGGFQS--IPKLTFPGGLLIGCSPGFMNVPKIK-----GTHTAMKSGTLAAESIF  280 (380)
T ss_dssp             TTTTTTSCCCCGGGG--CCCCEETTEEECTTTTCCCBTTTTB-----CHHHHHHHHHHHHHHHH
T ss_pred             hhhcccccccccccc--ccccccCCeeEEeccccccchhhcC-----CeeeeeccHHHHHHHHH
Confidence            322211   122110  0123458999999999987665433     44556777777776664

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.87  E-value=1.9e-09  Score=85.76  Aligned_cols=93  Identities=19%  Similarity=0.249  Sum_probs=69.3

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHH
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY  130 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (488)
                      .++|+|||||+.|+..|..|++.|.   +|++++..+...   +.+..           .+           .....+.+
T Consensus        22 ~~~vvVvGgG~ig~E~A~~l~~~g~---~vt~i~~~~~~l---~~~d~-----------~~-----------~~~~~~~l   73 (121)
T d1mo9a2          22 GSTVVVVGGSKTAVEYGCFFNATGR---RTVMLVRTEPLK---LIKDN-----------ET-----------RAYVLDRM   73 (121)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSCTTT---TCCSH-----------HH-----------HHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcch---hheEeeccchhh---ccccc-----------ch-----------hhhhhhhh
Confidence            4799999999999999999999876   899999876431   11100           00           12346778


Q ss_pred             HHCCCeEEeCCcEEEEeCCCc----EE---EeCCCcEEEeccEEeccC
Q 011351          131 KEKGIEMIYQDPVTSIDIEKQ----TL---ITNSGKLLKYGSLIVATG  171 (488)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~----~v---~~~~g~~i~yd~lVlAtG  171 (488)
                      ++.++++++++++..++....    .+   ...+++++++|.+++|+|
T Consensus        74 ~~~gI~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          74 KEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             HHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred             hccccEEEcCCEEEEEEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence            899999999999999986542    11   223456799999999998

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.86  E-value=7e-10  Score=97.26  Aligned_cols=114  Identities=12%  Similarity=0.057  Sum_probs=67.6

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCC-ccccCCCC---CCCCCCCCcccccCCCCCCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALT-KGYLFPLD---KKPARLPGFHTCVGSGGERQT  126 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  126 (488)
                      .+||+|||||+||++||.++++.|.   ++.||+++.......+.-+ .+......   .....-+....     +..+.
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~---ktllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a-----~raQ~   73 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGV---RVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWA-----FHARA   73 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC---CEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHH-----HHHHH
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCC---cEEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhh-----HHHHH
Confidence            4899999999999999999999988   8999998642211100000 00000000   00000000000     00000


Q ss_pred             -HhHHHHCCCeEEeCCcEEEEeCCCc---EEEeCCCcEEEeccEEeccCCC
Q 011351          127 -PEWYKEKGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCT  173 (488)
Q Consensus       127 -~~~~~~~~i~~~~~~~v~~id~~~~---~v~~~~g~~i~yd~lVlAtG~~  173 (488)
                       .......+++++. .+|.++..++.   .|.+.+|.++.++.|||+||..
T Consensus        74 k~~l~~~~nL~i~q-~~V~dli~e~~~v~gV~t~~G~~~~AkaVILtTGTF  123 (230)
T d2cula1          74 KYLLEGLRPLHLFQ-ATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSF  123 (230)
T ss_dssp             HHHHHTCTTEEEEE-CCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTC
T ss_pred             HHHHhhhcCHHHHh-ccceeeEecccceeeEEeccccEEEEeEEEEccCcc
Confidence             1122335888887 57888866554   4678899999999999999964

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.86  E-value=1.9e-09  Score=85.21  Aligned_cols=93  Identities=16%  Similarity=0.331  Sum_probs=68.3

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHh
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (488)
                      ..+++++|||||+.|+.+|..|++.|.   +|||+++.+...   +.+        +.   .+           .....+
T Consensus        20 ~~p~~v~IiGgG~ig~E~A~~l~~~G~---~Vtlve~~~~il---~~~--------d~---~~-----------~~~l~~   71 (117)
T d1ebda2          20 EVPKSLVVIGGGYIGIELGTAYANFGT---KVTILEGAGEIL---SGF--------EK---QM-----------AAIIKK   71 (117)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSSS---TTS--------CH---HH-----------HHHHHH
T ss_pred             hcCCeEEEECCCccceeeeeeeccccc---EEEEEEecceec---ccc--------cc---hh-----------HHHHHH
Confidence            445799999999999999999999987   899999887531   000        00   00           123467


Q ss_pred             HHHHCCCeEEeCCcEEEEeCCCc--EEEeC-CC--cEEEeccEEec
Q 011351          129 WYKEKGIEMIYQDPVTSIDIEKQ--TLITN-SG--KLLKYGSLIVA  169 (488)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~~--~v~~~-~g--~~i~yd~lVlA  169 (488)
                      .+++.|+++++++.|++++....  .+++. +|  +++.+|.|++.
T Consensus        72 ~l~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          72 RLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVT  117 (117)
T ss_dssp             HHHHTTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEEC
T ss_pred             HHHhcCCEEEcCCEEEEEEEcCCEEEEEEEeCCCEEEEEeEEEEEC
Confidence            78889999999999999976543  34443 34  46899999873

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.85  E-value=2.1e-09  Score=85.44  Aligned_cols=93  Identities=16%  Similarity=0.317  Sum_probs=68.0

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHh
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (488)
                      ..+++++|||||+.|+.+|..|++.|.   +|||++..+...   |...           ..+           .....+
T Consensus        21 ~~p~~~vIiG~G~ig~E~A~~l~~lG~---~Vtii~~~~~~l---~~~d-----------~ei-----------~~~l~~   72 (122)
T d1v59a2          21 EIPKRLTIIGGGIIGLEMGSVYSRLGS---KVTVVEFQPQIG---ASMD-----------GEV-----------AKATQK   72 (122)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSS---SSSC-----------HHH-----------HHHHHH
T ss_pred             cCCCeEEEECCCchHHHHHHHHHhhCc---ceeEEEeccccc---hhhh-----------hhh-----------HHHHHH
Confidence            445799999999999999999999987   899999886531   1000           000           123467


Q ss_pred             HHHHCCCeEEeCCcEEEEeCCC--cE--EEeCCC-----cEEEeccEEec
Q 011351          129 WYKEKGIEMIYQDPVTSIDIEK--QT--LITNSG-----KLLKYGSLIVA  169 (488)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~--~~--v~~~~g-----~~i~yd~lVlA  169 (488)
                      .+++.|++++++++|+++....  ..  +++.++     +++.+|.|++|
T Consensus        73 ~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          73 FLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             HHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             HHHhccceEEeCCEEEEEEEeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence            7888999999999999987543  23  344333     36899999987

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.85  E-value=1.7e-10  Score=103.27  Aligned_cols=107  Identities=13%  Similarity=0.127  Sum_probs=63.7

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCC-CCCCCCcccccCCCCCCCCHhHH
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKK-PARLPGFHTCVGSGGERQTPEWY  130 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  130 (488)
                      ++|+|||||||||+||.+|++.+. +.+|+|+|+.+.....   +.  +....... ...+           ......++
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~-~~~V~v~e~~~~~gG~---~~--~~~~~~~~~~~~~-----------~~~~~~~~   64 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHS-RAHVDIYEKQLVPFGL---VR--FGVAPDHPEVKNV-----------INTFTQTA   64 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCS-SCEEEEECSSSSSCTH---HH--HTSCTTCGGGGGH-----------HHHHHHHH
T ss_pred             CeEEEECccHHHHHHHHHHHhcCC-CCeEEEEeCCCCCCce---eh--hhccccccccccc-----------hhhhhhhh
Confidence            699999999999999999999865 5699999998764210   00  00100000 0000           01234455


Q ss_pred             HHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCC
Q 011351          131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIG  182 (488)
Q Consensus       131 ~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g  182 (488)
                      ...+++++.++.|.   .+   +...+- .-.||.+++|||+.+...+..++
T Consensus        65 ~~~~~~~~~~~~v~---~~---~~~~~l-~~~~d~v~~a~Ga~~~~~~~~~~  109 (230)
T d1cjca2          65 RSDRCAFYGNVEVG---RD---VTVQEL-QDAYHAVVLSYGAEDKSRPIDPS  109 (230)
T ss_dssp             TSTTEEEEBSCCBT---TT---BCHHHH-HHHSSEEEECCCCCEECCCCCTT
T ss_pred             hcCCeeEEeeEEeC---cc---ccHHHH-HhhhceEEEEeeccccccccccc
Confidence            66788888776541   11   111000 12589999999997654444443

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.84  E-value=1.8e-09  Score=85.95  Aligned_cols=96  Identities=15%  Similarity=0.210  Sum_probs=71.0

Q ss_pred             CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCH
Q 011351           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP  127 (488)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (488)
                      ....++++|||||+.|+.+|..+++.|.   +|+|++..+..           +...+.   .+           .....
T Consensus        23 ~~~p~~vvIiGgG~IG~E~A~~~~~~G~---~Vtive~~~~i-----------l~~~d~---~~-----------~~~l~   74 (125)
T d1ojta2          23 KEVPGKLLIIGGGIIGLEMGTVYSTLGS---RLDVVEMMDGL-----------MQGADR---DL-----------VKVWQ   74 (125)
T ss_dssp             CCCCSEEEEESCSHHHHHHHHHHHHHTC---EEEEECSSSSS-----------STTSCH---HH-----------HHHHH
T ss_pred             cccCCeEEEECCCHHHHHHHHHhhcCCC---EEEEEEeeccc-----------cccchh---hH-----------HHHHH
Confidence            3446799999999999999999999987   89999987642           100000   00           12345


Q ss_pred             hHHHHCCCeEEeCCcEEEEeCCCc--EEEeCC--C--cEEEeccEEeccC
Q 011351          128 EWYKEKGIEMIYQDPVTSIDIEKQ--TLITNS--G--KLLKYGSLIVATG  171 (488)
Q Consensus       128 ~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~--g--~~i~yd~lVlAtG  171 (488)
                      +.+++.+++++.++.++++.....  .+++.+  |  +++.+|.|++|+|
T Consensus        75 ~~l~~~gv~~~~~~~v~~v~~~~~g~~v~~~~~~g~~~~i~~D~vl~A~G  124 (125)
T d1ojta2          75 KQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAG  124 (125)
T ss_dssp             HHHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCC
T ss_pred             HHHHHcCcccccCcEEEEEEEcCCcEEEEEEeCCCCeEEEEcCEEEEecC
Confidence            677889999999999999876543  444433  2  3699999999998

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.84  E-value=3.6e-09  Score=83.97  Aligned_cols=94  Identities=17%  Similarity=0.231  Sum_probs=65.7

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHh
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (488)
                      ..+++++|||||+.|+..|..|++.|.   +|||++++..++    ...+           .+           .....+
T Consensus        18 ~~P~~vvIIGgG~iG~E~A~~l~~lG~---~Vtii~~~~~l~----~~D~-----------~~-----------~~~l~~   68 (122)
T d1h6va2          18 YCPGKTLVVGASYVALECAGFLAGIGL---DVTVMVRSILLR----GFDQ-----------DM-----------ANKIGE   68 (122)
T ss_dssp             SCCCSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSSST----TSCH-----------HH-----------HHHHHH
T ss_pred             cCCCeEEEECCCccHHHHHHHHhhcCC---eEEEEEechhhc----cCCH-----------HH-----------HHHHHH
Confidence            345789999999999999999999987   899998653211    1000           00           123467


Q ss_pred             HHHHCCCeEEeCCcEEEEeCC----Cc--EEEeCCC---c--EEEeccEEeccC
Q 011351          129 WYKEKGIEMIYQDPVTSIDIE----KQ--TLITNSG---K--LLKYGSLIVATG  171 (488)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~----~~--~v~~~~g---~--~i~yd~lVlAtG  171 (488)
                      .+++.|+++++++.|+++...    ..  .+++..+   +  .+.+|.|++|+|
T Consensus        69 ~l~~~Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          69 HMEEHGIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             HHHHTTEEEEESCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred             HHHHCCCEEEECCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence            788899999999988887532    11  3333322   2  467999999998

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.82  E-value=2.4e-09  Score=97.58  Aligned_cols=122  Identities=11%  Similarity=0.055  Sum_probs=71.7

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC---CCCcc---cc--CCC--CCCCCCCCCcccc--
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP---ALTKG---YL--FPL--DKKPARLPGFHTC--  117 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~---~l~~~---~~--~~~--~~~~~~~~~~~~~--  117 (488)
                      ...||+|||||+||+++|..|+++|+   +|+|+|+++.......   .++..   .+  ...  .........+...  
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~---~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~   79 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGV---DVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDA   79 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEET
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCC---CEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhccCCCcceeEec
Confidence            46799999999999999999999998   8999999764211100   00000   00  000  0000000000000  


Q ss_pred             -c-------CCCCCCCCH-----h-HHHHCCCeEEeCCcEEEEeCCC--cEEEeCCCcEEEeccEEeccCCCC
Q 011351          118 -V-------GSGGERQTP-----E-WYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTA  174 (488)
Q Consensus       118 -~-------~~~~~~~~~-----~-~~~~~~i~~~~~~~v~~id~~~--~~v~~~~g~~i~yd~lVlAtG~~~  174 (488)
                       .       .........     . .....+..++.+.++++++...  -+++++||+++.+|.+|.|.|...
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~v~~~dG~~~~~d~~v~adG~~s  152 (265)
T d2voua1          80 LTGERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGAS  152 (265)
T ss_dssp             TTCCEEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTC
T ss_pred             cCCceecccccccccchhHHHHHHHHHhcccceeecCcEEEEEEeeCCceEEEECCCCEEEEEEEeccccccc
Confidence             0       000000011     1 1123467888899999988654  467889999999999999999654

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.82  E-value=3.2e-08  Score=92.64  Aligned_cols=166  Identities=17%  Similarity=0.224  Sum_probs=105.9

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc--------------------------------------------
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------------------------------------------  244 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~--------------------------------------------  244 (488)
                      .|+|||+|..|+-.|..+++.|.+|.++++.+..-.                                            
T Consensus        21 DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~gG~S~~a~Ggi~a~~~~~~~~~g~~d~~~~~~~d~~~~~~~~~d~~  100 (317)
T d1qo8a2          21 QVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQNDIK  100 (317)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCHH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCCCcccccchhhhhcccCCcHHHHHHHHHHhhccccchh
Confidence            499999999999999999999999999987521100                                            


Q ss_pred             -----------------------------------c--------ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCC
Q 011351          245 -----------------------------------R--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG  281 (488)
Q Consensus       245 -----------------------------------~--------~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~  281 (488)
                                                         +        .....+...+.+.+++.|+++++++.++++..++++
T Consensus       101 lv~~~~~~a~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~g~~~g~~i~~~L~~~~~~~g~~i~~~~~v~~l~~~~~g  180 (317)
T d1qo8a2         101 LVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDH  180 (317)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEECTTS
T ss_pred             HHHHHHhhhhhhhhhHHHhhhcccccccccCcccccccccccccccchhhhHHHHHHhhhccceeeeccchhheeecccc
Confidence                                               0        001234455667778899999999999998777788


Q ss_pred             cEEEEEeC--CCc--EEEcCEEEEeecCcc-CCh--------------------------hhhhcCCcc-cCCCEEeC--
Q 011351          282 RVAAVKLE--DGS--TIDADTIVIGIGAKP-TVS--------------------------PFERVGLNS-SVGGIQVD--  327 (488)
Q Consensus       282 ~v~~v~l~--~g~--~i~~D~vi~a~G~~p-~~~--------------------------~~~~~gl~~-~~g~i~vd--  327 (488)
                      ++.++...  +++  .+.++.||+|||--. |.+                          +..+.|... +-.++.+.  
T Consensus       181 ~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~~~n~~~~~~~~p~~~~~~~~~~~~~tGdGi~ma~~~Ga~l~~me~vq~~~~  260 (317)
T d1qo8a2         181 SVVGAVVHGKHTGYYMIGAKSVVLATGGYGMNKEMIAYYRPTMKDMTSSNNITATGDGVLMAKEIGASMTDIDWVQAAIN  260 (317)
T ss_dssp             BEEEEEEEETTTEEEEEEEEEEEECCCCCTTCHHHHHHHCGGGTTCEECSCTTCSCHHHHHHHHTTBCEESTTCEEECBC
T ss_pred             cceeeEeecccceEEEEeccceEEeccccccCHHHHHHhhhccccccccCCCCcCcHHHHHHHHcCCeecCCcceeeccC
Confidence            88877664  333  578999999998421 111                          122233322 11233321  


Q ss_pred             C------CCCCCCCCEEEEceecccCC--ccCCcccccccHHHHHHHHHHHHHHH
Q 011351          328 G------QFRTRMPGIFAIGDVAAFPL--KMYDRTARVEHVDHARQSAQHCIKAL  374 (488)
Q Consensus       328 ~------~~~t~~~~Ifa~GD~a~~~~--~~~~~~~~~~~~~~A~~~g~~~a~~i  374 (488)
                      .      ...+.+|++||+|+|+..-.  ...+..+-.+..-.++..|+.+|++.
T Consensus       261 ~~~~~~d~~~~~i~gl~aaGe~~~g~hG~nrlggnsl~~~~vfg~~ag~~aa~~~  315 (317)
T d1qo8a2         261 TTASVLDLQSKPIDGLFAAGEVTGGVHGYNRLGGNAIADTVVFGRIAGDNAAKHA  315 (317)
T ss_dssp             TTCEEEBTTSCEEEEEEECSTTBCSSSTTCCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccEEeCCCCCEECCEeehhhhccCCCCCCccccchHHHHHHHHHHHHHHHHHHh
Confidence            1      11236899999999996321  11222332334445666666666654

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=2.8e-09  Score=85.09  Aligned_cols=94  Identities=17%  Similarity=0.216  Sum_probs=68.3

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      .+++++|||||+.|+.+|..|++.|.   +|||+++.+...   |.+.        .   .+           .....+.
T Consensus        21 ~pk~vvIvGgG~iG~E~A~~l~~~G~---~Vtlv~~~~~~l---~~~d--------~---~~-----------~~~~~~~   72 (125)
T d3grsa2          21 LPGRSVIVGAGYIAVEMAGILSALGS---KTSLMIRHDKVL---RSFD--------S---MI-----------STNCTEE   72 (125)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSC---TTSC--------H---HH-----------HHHHHHH
T ss_pred             cCCEEEEEcCCccHHHHHHHHhcCCc---EEEEEeeccccc---cchh--------h---HH-----------HHHHHHH
Confidence            35799999999999999999999987   899999886531   0000        0   00           1235677


Q ss_pred             HHHCCCeEEeCCcEEEEeCCCc--EEE---eCCCc------EEEeccEEeccC
Q 011351          130 YKEKGIEMIYQDPVTSIDIEKQ--TLI---TNSGK------LLKYGSLIVATG  171 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~--~v~---~~~g~------~i~yd~lVlAtG  171 (488)
                      +++.|++++++++++++.....  .+.   ...|+      .+.+|.|++|+|
T Consensus        73 l~~~Gv~i~~~~~v~~i~~~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2          73 LENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             HHHTTCEEETTEEEEEEEEETTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred             HHHCCCEEEeCCEEEEEEEcCCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence            7899999999999999975443  222   22332      467999999998

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.81  E-value=1.7e-09  Score=93.55  Aligned_cols=111  Identities=19%  Similarity=0.226  Sum_probs=69.6

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccc-cCCCCCCCCHh
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTC-VGSGGERQTPE  128 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  128 (488)
                      +++||+||||||+||+||.+|++.|.   +++|||+++.....       ...   ....++++++.. .+.........
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~---~v~iie~~~~~g~~-------~~~---~~i~~~~~~~~~~~~~~~~~~~~~   70 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANL---QPVLITGMEKGGQL-------TTT---TEVENWPGDPNDLTGPLLMERMHE   70 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTC---CCEEECCSSTTGGG-------GGC---SBCCCSTTCCSSCBHHHHHHHHHH
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC---ceEEEEeecccccc-------ccc---chhhhhhccccccchHHHHHHHHH
Confidence            46799999999999999999999987   89999976542110       000   001111111110 00011112234


Q ss_pred             HHHHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCCCC
Q 011351          129 WYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS  175 (488)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~~~  175 (488)
                      .....++++.. ..|+.++....  .++. ....+..+.+++++|..++
T Consensus        71 ~~~~~~~~~~~-~~V~~~~~~~~~~~v~~-~~~~~~~~~viva~G~~~~  117 (190)
T d1trba1          71 HATKFETEIIF-DHINKVDLQNRPFRLNG-DNGEYTCDALIIATGASAR  117 (190)
T ss_dssp             HHHHTTCEEEC-CCEEEEECSSSSEEEEE-SSCEEEEEEEEECCCEEEC
T ss_pred             HHHhcCcEEec-ceeEEEecCCCcEEEEE-eeeeEeeeeeeeecceeee
Confidence            45667888876 47888887654  4444 3456899999999997654

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.81  E-value=4.2e-08  Score=90.62  Aligned_cols=100  Identities=13%  Similarity=0.146  Sum_probs=80.3

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc----------------------------------c--cCHHH
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------------------------------L--FTPSL  251 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~----------------------------------~--~~~~~  251 (488)
                      -.|+|||+|++|+-+|..|.+.|.+++++++.+.+-..                                  .  -.+++
T Consensus         8 ~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~~~~~~~~~p~~~e~   87 (298)
T d1w4xa1           8 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEI   87 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHHH
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccccCCCCCceeccccccccccccccccCCCCCccccCccchH
Confidence            35999999999999999999999999999987432110                                  0  01356


Q ss_pred             HHHHHHHHHHcCc--EEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCcc
Q 011351          252 AQRYEQLYQQNGV--KFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  307 (488)
Q Consensus       252 ~~~~~~~l~~~GV--~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p  307 (488)
                      .++++...++.++  .+.++++|+++..+++...-.|.+.+++++.+|.||+|+|...
T Consensus        88 ~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~ls  145 (298)
T d1w4xa1          88 LRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLS  145 (298)
T ss_dssp             HHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCC
T ss_pred             HHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeecccc
Confidence            7788888888898  5999999999986555444578899999999999999999743

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.81  E-value=2.3e-08  Score=86.77  Aligned_cols=98  Identities=18%  Similarity=0.268  Sum_probs=72.2

Q ss_pred             eEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCcCcccccCH--------------HHHHHHHHHHHHcCcEEEcCCeE
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQRLFTP--------------SLAQRYEQLYQQNGVKFVKGASI  272 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g--~~v~lv~~~~~~l~~~~~~--------------~~~~~~~~~l~~~GV~v~~~~~v  272 (488)
                      +|+|||+|++|+|+|..|++++  .+|+++++.+.+..  .++              .+.....+.++++||+++++++|
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~V   79 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISF--LSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEI   79 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSB--CGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEE
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcccc--cccCcchhhcccccchHHHHHhhHHHHHHCCcEEEEeece
Confidence            6999999999999999999874  47899998765521  111              11122346688999999999999


Q ss_pred             EEEEeCCCCcEEEEEeCCCc--EEEcCEEEEeecCccCC
Q 011351          273 KNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTV  309 (488)
Q Consensus       273 ~~i~~~~~~~v~~v~l~~g~--~i~~D~vi~a~G~~p~~  309 (488)
                      ++++.+ +..+..-.+.+|+  ++++|.+|+++|..|+.
T Consensus        80 ~~i~~~-~~~v~~~~~~~g~~~~~~~D~li~a~G~~~~~  117 (198)
T d1nhpa1          80 TAIQPK-EHQVTVKDLVSGEERVENYDKLIISPGAVPFE  117 (198)
T ss_dssp             EEEETT-TTEEEEEETTTCCEEEEECSEEEECCCEEECC
T ss_pred             eeEeec-cccceeeecccccccccccceeeEeecceeec
Confidence            999854 4443322345554  57899999999999864

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.80  E-value=2.1e-11  Score=109.93  Aligned_cols=153  Identities=12%  Similarity=0.108  Sum_probs=83.4

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCC----CCCcEEEEcCCCCCCCCCCCCCccccC-CCCCCCCCCCCcccccCCCCCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGM----ADGRLCIVSKEAYAPYERPALTKGYLF-PLDKKPARLPGFHTCVGSGGERQ  125 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~----~~~~V~lie~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  125 (488)
                      +++|+|||||||||+||++|+++|+    .+.+|+|+|+.+.....    .. +-. +........           ...
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~----~~-~gi~p~~~~~~~~-----------~~~   65 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGL----VR-SGVAPDHPKIKSI-----------SKQ   65 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTH----HH-HTSCTTCTGGGGG-----------HHH
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCe----ee-eccCcccccchhh-----------hhh
Confidence            4699999999999999999999984    12479999998764311    00 000 100000000           112


Q ss_pred             CHhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEEeccEEeccCCCCCcCCCCCCCCCCc----EEEecCHHHH---H
Q 011351          126 TPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG----VHYIRDVADA---D  198 (488)
Q Consensus       126 ~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~yd~lVlAtG~~~~~~~~~~g~~~~g----v~~~~~~~~~---~  198 (488)
                      ...++...+++++.+..+.      +.+..++ -...||++++|||+....+. .++...+.    ...+......   .
T Consensus        66 ~~~~~~~~g~~~~~~~~v~------~~~~~~~-~~~~~~~v~~atGa~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~  137 (239)
T d1lqta2          66 FEKTAEDPRFRFFGNVVVG------EHVQPGE-LSERYDAVIYAVGAQSRGVP-TPGLPFDDQSGTIPNVGGRINGSPNE  137 (239)
T ss_dssp             HHHHHTSTTEEEEESCCBT------TTBCHHH-HHHHSSEEEECCCCCEECCC-CTTSCCBTTTTBCCEETTEETTCSSE
T ss_pred             hhhhhccCCceEEEEEEec------cccchhh-hhccccceeeecCCCccccc-cccccccccccchhhhhhhhcccccc
Confidence            2344556788888876541      1111111 11369999999998765332 22221111    1111100000   0


Q ss_pred             HHHHhhhcCCeEEEECCCHHHHHHHHHHH
Q 011351          199 ALISSLEKAKKVVVVGGGYIGMEVAAAAV  227 (488)
Q Consensus       199 ~~~~~~~~~~~vvVvG~G~~g~e~A~~l~  227 (488)
                      ........+++++|+|++..+++++..+.
T Consensus       138 ~~~~~~~~g~~~vv~g~g~~a~d~a~~~v  166 (239)
T d1lqta2         138 YVVGWIKRGPTGVIGTNKKDAQDTVDTLI  166 (239)
T ss_dssp             EECTHHHHCSCSCTTHHHHHHHHHHHHHH
T ss_pred             ccceeecCCCEEEEeCCCchHHHHHHHHH
Confidence            00001124677888899999999887653

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.80  E-value=4.5e-08  Score=91.17  Aligned_cols=97  Identities=18%  Similarity=0.206  Sum_probs=73.2

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc--------------------------------------ccC--
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------------------------------------LFT--  248 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~--------------------------------------~~~--  248 (488)
                      .|+|||+|..|+-+|..|++.|.+|.|+++.+..-..                                      ..+  
T Consensus        18 DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~gG~s~~s~G~~~~~~~~~~~~~~~~d~~~~~~~d~~~~~~~~~d~~   97 (308)
T d1y0pa2          18 DVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDPA   97 (308)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCHH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcceecCCCCccccchhhhhhhccchHHHHHHHHHhhhhhccchH
Confidence            5999999999999999999999999999976321000                                      000  


Q ss_pred             -----------------------------------------------HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCC
Q 011351          249 -----------------------------------------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG  281 (488)
Q Consensus       249 -----------------------------------------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~  281 (488)
                                                                     ..+...+.+.+++.|+++++++.++++..++++
T Consensus        98 lv~~~~~~~~~~i~~L~~~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv~i~~~~~v~~li~~~~G  177 (308)
T d1y0pa2          98 LVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKG  177 (308)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEECTTS
T ss_pred             HHHHHHHhhhHHHHHHHHcCCCccccccccccccccccccccccchHHHHHHHHHHHHHhccceEEEeeccchhhhhccc
Confidence                                                           112333445567789999999999998877778


Q ss_pred             cEEEEEeCC--C--cEEEcCEEEEeecC
Q 011351          282 RVAAVKLED--G--STIDADTIVIGIGA  305 (488)
Q Consensus       282 ~v~~v~l~~--g--~~i~~D~vi~a~G~  305 (488)
                      ++.+|...+  +  .++.++.||+|||-
T Consensus       178 ~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG  205 (308)
T d1y0pa2         178 TVKGILVKGMYKGYYWVKADAVILATGG  205 (308)
T ss_dssp             CEEEEEEEETTTEEEEEECSEEEECCCC
T ss_pred             ccccccccccccceeEeecCeEEEccCc
Confidence            888887653  2  25899999999983

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=98.79  E-value=6.8e-09  Score=98.10  Aligned_cols=108  Identities=11%  Similarity=0.179  Sum_probs=63.3

Q ss_pred             HHHcCcEEEcCCeEEEEEeCCCCcEEEEEe--CCCcEEEcCEEEEeecCc--------cCChhhh-hc--CCcccCCCEE
Q 011351          259 YQQNGVKFVKGASIKNLEAGSDGRVAAVKL--EDGSTIDADTIVIGIGAK--------PTVSPFE-RV--GLNSSVGGIQ  325 (488)
Q Consensus       259 l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l--~~g~~i~~D~vi~a~G~~--------p~~~~~~-~~--gl~~~~g~i~  325 (488)
                      +++.|++++++++|++|+.++++....+..  .++++++||.||+|++..        |...... ++  .+........
T Consensus       245 ~~~~g~~i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~aD~VI~A~p~~~l~~i~~~p~l~~~~~~ai~~~~~~~~~~~  324 (370)
T d2iida1         245 YRDIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRLIKFNPPLLPKKAHALRSVFTPYQFQH  324 (370)
T ss_dssp             HHHTGGGEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCHHHHTTSEEESCCCHHHHHHHHHCCCTTHHHH
T ss_pred             HHhcCCccccCceEEEEEEeCCeEEEEEEecCCCeEEEEeeEEEecCCHHHHhhCccCCCCCHHHHHHHHhcCCcccccc
Confidence            466799999999999999765443222333  345689999999998632        2111000 00  0000000011


Q ss_pred             eCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 011351          326 VDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  375 (488)
Q Consensus       326 vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~  375 (488)
                      .+..+.+...+||++||++..+..         .+..|+..|..+|.+|-
T Consensus       325 ~~~~~~~~~g~v~~aGd~~~~~~~---------~~~~a~~sG~~aA~~i~  365 (370)
T d2iida1         325 FSDPLTASQGRIYFAGEYTAQAHG---------WIDSTIKSGLRAARDVN  365 (370)
T ss_dssp             HHHHHHCCBTTEEECSGGGSSSSS---------CHHHHHHHHHHHHHHHH
T ss_pred             cchhhhcccCCEEEecccccCCCc---------ccHHHHHHHHHHHHHHH
Confidence            112233344679999998875431         34568888988888774

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=98.79  E-value=2.3e-09  Score=99.96  Aligned_cols=44  Identities=16%  Similarity=0.202  Sum_probs=35.9

Q ss_pred             HHHHCCCeEEeCCcEEEEeCCCcE---EEeCCCcEEEeccEEeccCCC
Q 011351          129 WYKEKGIEMIYQDPVTSIDIEKQT---LITNSGKLLKYGSLIVATGCT  173 (488)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~~~---v~~~~g~~i~yd~lVlAtG~~  173 (488)
                      .+++.|++++.+++|+++..++..   |.+++| ++.+|+||+|+|..
T Consensus       157 ~a~~~gv~i~~~~~V~~i~~~~~~v~~V~T~~g-~i~a~~VV~aaG~~  203 (305)
T d1pj5a2         157 RTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFW  203 (305)
T ss_dssp             HHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGG
T ss_pred             hhhcccccccCCceEEEEEEeCCEEEEEeccce-eEECCEEEEecchh
Confidence            345679999999999999987764   556666 59999999999974

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.78  E-value=1.9e-09  Score=93.37  Aligned_cols=114  Identities=20%  Similarity=0.243  Sum_probs=69.1

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCccc-ccCCCCCCCCHh
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTPE  128 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  128 (488)
                      .++||+|||||+||++||.+|++.|.   +++|+|+........-.    .+... ....++++++. ..+.+......+
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~---~v~vie~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~el~~~~~~   75 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAEL---KPLLFEGWMANDIAPGG----QLTTT-TDVENFPGFPEGILGVELTDKFRK   75 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTC---CCEEECCSSBTTBCTTC----GGGGC-SEECCSTTCTTCEEHHHHHHHHHH
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCC---cEEEEEeeccccccccc----ccccc-hhhhccccccccccchHHHHHHHH
Confidence            46899999999999999999999987   79999987653322100    11000 00011111111 001111112223


Q ss_pred             HHHHCCCeEEeCCcEEEEeCCCc--EEEeCCCcEEEeccEEeccCCC
Q 011351          129 WYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCT  173 (488)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~i~yd~lVlAtG~~  173 (488)
                      ...++++++..+ .|..++...+  .+. .+...+.+|.+++++|..
T Consensus        76 q~~~~g~~i~~~-~V~~~~~~~~~~~v~-~~~~~~~~~~~~~a~g~~  120 (192)
T d1vdca1          76 QSERFGTTIFTE-TVTKVDFSSKPFKLF-TDSKAILADAVILAIGAV  120 (192)
T ss_dssp             HHHHTTCEEECC-CCCEEECSSSSEEEE-CSSEEEEEEEEEECCCEE
T ss_pred             HHHhhcceeeee-eEEecccccCcEEec-ccceeeeeeeEEEEeeee
Confidence            446679998864 7888887654  343 344568999999999963

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.76  E-value=1e-08  Score=86.67  Aligned_cols=89  Identities=17%  Similarity=0.214  Sum_probs=71.3

Q ss_pred             hcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc----------ccCHHHHHHHHHHHHHcCcEEEcCCeEEE
Q 011351          205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------LFTPSLAQRYEQLYQQNGVKFVKGASIKN  274 (488)
Q Consensus       205 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~----------~~~~~~~~~~~~~l~~~GV~v~~~~~v~~  274 (488)
                      ..+|+|+|||+|+.|++.|..|+++|.+|+++++.+.+-..          ....++.+++.+.+++.||++++|+.|+.
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l~~~Vt~  120 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVTA  120 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCCS
T ss_pred             CCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEeCCEEcc
Confidence            46799999999999999999999999999999998765321          11235667888889999999999986632


Q ss_pred             EEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCC
Q 011351          275 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  309 (488)
Q Consensus       275 i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~  309 (488)
                                     + ....+|.||+|+|..|..
T Consensus       121 ---------------~-~~~~~d~vilAtG~~~~~  139 (179)
T d1ps9a3         121 ---------------D-QLQAFDETILASGIPNRA  139 (179)
T ss_dssp             ---------------S-SSCCSSEEEECCCEECCT
T ss_pred             ---------------c-ccccceeEEEeecCCCcc
Confidence                           1 125689999999998764

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.72  E-value=4.6e-08  Score=77.97  Aligned_cols=94  Identities=16%  Similarity=0.293  Sum_probs=73.7

Q ss_pred             hhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCC-Cc
Q 011351          204 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD-GR  282 (488)
Q Consensus       204 ~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~-~~  282 (488)
                      +.++|.|+|||+|.+++|.|..|++...+|++++|++.+-.   ++...   .+.++..+|++++++++.++..++. +.
T Consensus        31 ~frgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ra---~~~~~---~~l~~~~nI~v~~~~~v~~i~Gd~~~~~  104 (130)
T d1vdca2          31 IFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA---SKIMQ---QRALSNPKIDVIWNSSVVEAYGDGERDV  104 (130)
T ss_dssp             GGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS---CHHHH---HHHHTCTTEEEECSEEEEEEEESSSSSS
T ss_pred             HhCCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecccccc---chhhh---hccccCCceEEEeccEEEEEEccCCccc
Confidence            56899999999999999999999999999999999987754   33332   3444556799999999999985432 34


Q ss_pred             EEEEEeCC---C--cEEEcCEEEEee
Q 011351          283 VAAVKLED---G--STIDADTIVIGI  303 (488)
Q Consensus       283 v~~v~l~~---g--~~i~~D~vi~a~  303 (488)
                      +..+.+.+   |  +++++|-|++++
T Consensus       105 v~~v~l~~~~tge~~~l~~dGvFVaI  130 (130)
T d1vdca2         105 LGGLKVKNVVTGDVSDLKVSGLFFAI  130 (130)
T ss_dssp             EEEEEEEETTTCCEEEEECSEEEECS
T ss_pred             EEEEEEEECCCCCEEEEECCEEEEEC
Confidence            66666543   3  479999999874

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.70  E-value=1.4e-08  Score=80.57  Aligned_cols=94  Identities=14%  Similarity=0.309  Sum_probs=68.8

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHh
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (488)
                      ..+++++|||||+.|+.+|..+++.|.   +|||+++.+...   |.+.        .   .+           .....+
T Consensus        23 ~~p~~~viiG~G~iglE~A~~~~~~G~---~Vtvi~~~~~~l---~~~d--------~---~~-----------~~~l~~   74 (123)
T d1dxla2          23 EIPKKLVVIGAGYIGLEMGSVWGRIGS---EVTVVEFASEIV---PTMD--------A---EI-----------RKQFQR   74 (123)
T ss_dssp             SCCSEEEESCCSHHHHHHHHHHHHHTC---EEEEECSSSSSS---TTSC--------H---HH-----------HHHHHH
T ss_pred             ccCCeEEEEccchHHHHHHHHHHhcCC---eEEEEEEccccC---chhh--------h---cc-----------hhhhhh
Confidence            445799999999999999999999987   899999886531   1100        0   00           123467


Q ss_pred             HHHHCCCeEEeCCcEEEEeCCCc--EEEe--C-CC--cEEEeccEEecc
Q 011351          129 WYKEKGIEMIYQDPVTSIDIEKQ--TLIT--N-SG--KLLKYGSLIVAT  170 (488)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~~--~v~~--~-~g--~~i~yd~lVlAt  170 (488)
                      .+++.|+++++++.+.+++..+.  ++.+  . +|  +.+.+|++++|.
T Consensus        75 ~l~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vLvAA  123 (123)
T d1dxla2          75 SLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSA  123 (123)
T ss_dssp             HHHHSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred             hhhcccceEEcCCceEEEEEccCeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence            78899999999999999986543  3333  2 33  358999999883

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.68  E-value=6e-08  Score=79.85  Aligned_cols=94  Identities=22%  Similarity=0.383  Sum_probs=66.9

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEE
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA  284 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~-~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~  284 (488)
                      .+++|+|||||.+|+|+|..+.+.|. .|++++|++..-.. ..+    .-...+...+++++.+..+.++... ++++.
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~~~~~-a~~----~~~~~a~~~~~~~~~~~~~~ei~~~-~~~~~  117 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIR-AVP----EEVELAKEEKCEFLPFLSPRKVIVK-GGRIV  117 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCC-SCH----HHHHHHHHTTCEEECSEEEEEEEEE-TTEEE
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCChhhhc-cch----hheeecccccceeEeccccEEEEec-CCceE
Confidence            35789999999999999999999976 48899888754322 122    2223456678999999988888754 44444


Q ss_pred             EEEe------CCC---------cEEEcCEEEEeecC
Q 011351          285 AVKL------EDG---------STIDADTIVIGIGA  305 (488)
Q Consensus       285 ~v~l------~~g---------~~i~~D~vi~a~G~  305 (488)
                      .+..      ++|         .+++||.|++|+|.
T Consensus       118 ~v~~~~~e~d~~G~~~~~~g~e~~i~aD~V~~AiG~  153 (153)
T d1gtea3         118 AVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGS  153 (153)
T ss_dssp             EEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCE
T ss_pred             EEEEEEeeECCCCCEecCCCCEEEEECCEEEECcCc
Confidence            4332      122         35899999999983

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=98.63  E-value=7.8e-08  Score=87.81  Aligned_cols=69  Identities=20%  Similarity=0.364  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcCCcccCCC
Q 011351          251 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGG  323 (488)
Q Consensus       251 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~  323 (488)
                      +...+.+.+++.|++++.+++|++|+.+  +.+..|.+++| ++.||.||+|+|.... .+++.+|+...++.
T Consensus       153 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~--~~~~~V~t~~g-~i~a~~vV~AaG~~s~-~l~~~~G~~~~~~~  221 (276)
T d1ryia1         153 VCKAYVKAAKMLGAEIFEHTPVLHVERD--GEALFIKTPSG-DVWANHVVVASGVWSG-MFFKQLGLNNADGK  221 (276)
T ss_dssp             HHHHHHHHHHHTTCEEETTCCCCEEECS--SSSEEEEETTE-EEEEEEEEECCGGGTH-HHHHHTTCCCCSSC
T ss_pred             chhHHHHHHHHcCCEEecceEEEeEEee--cceEEEecCCe-EEEcCEEEECCCccHH-HHHhhcCCCccccc
Confidence            3445566678899999999999999854  34457888887 5999999999998764 68888888765443

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.62  E-value=2.7e-08  Score=92.72  Aligned_cols=37  Identities=27%  Similarity=0.455  Sum_probs=33.7

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      ...+||+|||||+||++||.+|++.|.   +|+||||.+.
T Consensus        14 ~e~~DVlVIG~G~aGl~aA~~la~~G~---~V~lvEK~~~   50 (308)
T d1y0pa2          14 HDTVDVVVVGSGGAGFSAAISATDSGA---KVILIEKEPV   50 (308)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSS
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCC---cEEEEecCCC
Confidence            346899999999999999999999987   8999999874

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=98.59  E-value=1.7e-06  Score=81.09  Aligned_cols=122  Identities=17%  Similarity=0.238  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEeecCccCC---------------hh
Q 011351          252 AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKPTV---------------SP  311 (488)
Q Consensus       252 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l---~~g~--~i~~D~vi~a~G~~p~~---------------~~  311 (488)
                      ...+.+..++.|++++.++.+.++..+ ++++.++..   .+|+  ++.++.||+|||--...               .+
T Consensus       161 ~~~l~~~~~~~gv~i~~~~~~~~li~~-~~~v~g~~~~~~~~g~~~~i~Ak~VvlATGG~~~~~~~t~~~~~~tGdg~~~  239 (336)
T d2bs2a2         161 LFAVANECLKLGVSIQDRKEAIALIHQ-DGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGTGTAI  239 (336)
T ss_dssp             HHHHHHHHHHHTCEEECSEEEEEEEEE-TTEEEEEEEEETTTCCEEEEECSEEEECCCCCGGGSSSBSSCTTCSCHHHHH
T ss_pred             HHHHHHHHHhccccccceeeeeecccc-cccccceeEEeccCCcEEEEecCeEEEeccccccccccccccccccchhhhh
Confidence            344455567789999999999888754 566555443   4565  47899999999843210               11


Q ss_pred             hhhcCCc--ccCCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 011351          312 FERVGLN--SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  375 (488)
Q Consensus       312 ~~~~gl~--~~~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~  375 (488)
                      ....|+.  .+.++|.+|+..+|+.|++|++||++.......++.. -..+..+...+...++..+
T Consensus       240 ~~~~G~~~l~~~~~iq~~~~~~t~~~gl~a~G~~~~~~~~~~~~~~-~~~~~e~~~~~~~~ge~~~  304 (336)
T d2bs2a2         240 ALETGIAQLGNMGGIRTDYRGEAKLKGLFSAGEAACWDMHGFNRLG-GNSVSEAVVAGMIVGEYFA  304 (336)
T ss_dssp             HHTTSSSCEECCCEEECCTTSBCSSBTEEECGGGEECCSSTTCCCT-THHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhccccceeechhhcccCCcceeccccccccccccccch-hhccchhhhhcchhHHHHH
Confidence            2334532  2567899999999999999999999875443222211 1133445555555555444

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.57  E-value=3.3e-08  Score=84.55  Aligned_cols=108  Identities=22%  Similarity=0.229  Sum_probs=66.2

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhHHH
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYK  131 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (488)
                      +||+||||||+|++||.++++.|.   +++|||++...     .+    ...  ....+++++....+...........+
T Consensus         2 yDViIIGgGpaGl~AAi~aar~G~---~v~iie~~~gg-----~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~   67 (184)
T d1fl2a1           2 YDVLIVGSGPAGAAAAIYSARKGI---RTGLMGERFGG-----QI----LDT--VDIENYISVPKTEGQKLAGALKVHVD   67 (184)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTC---CEEEECSSTTG-----GG----GGC--CEECCBTTBSSEEHHHHHHHHHHHHH
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCC---eEEEEEEecCC-----cc----ccc--ccceeccccchhhhHHHHHHHHHHhh
Confidence            799999999999999999999987   89999975321     00    000  00111121111111111111223345


Q ss_pred             HCCCeEEeCCcEEEEeCCC-----cEEEeCCCcEEEeccEEeccCCC
Q 011351          132 EKGIEMIYQDPVTSIDIEK-----QTLITNSGKLLKYGSLIVATGCT  173 (488)
Q Consensus       132 ~~~i~~~~~~~v~~id~~~-----~~v~~~~g~~i~yd~lVlAtG~~  173 (488)
                      +.+.+......+..+....     +.....+...+..+.+++++|..
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  114 (184)
T d1fl2a1          68 EYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAK  114 (184)
T ss_dssp             TSCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEE
T ss_pred             heeceeeccceeeeecccccccceeeeeeecceeeeccccccccccc
Confidence            6677777766677665432     24455667789999999999964

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.56  E-value=5.3e-09  Score=92.58  Aligned_cols=36  Identities=25%  Similarity=0.340  Sum_probs=33.0

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      ..++|+||||||+||++||..+++.|.   +|+|||++.
T Consensus         3 ~~~~DlvVIG~GpaGl~aA~~aa~~G~---~V~liE~~~   38 (220)
T d1lvla1           3 TIQTTLLIIGGGPGGYVAAIRAGQLGI---PTVLVEGQA   38 (220)
T ss_dssp             CEECSEEEECCSHHHHHHHHHHHHHTC---CEEEECSSC
T ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC---cEEEEecCC
Confidence            456899999999999999999999987   899999875

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=98.52  E-value=5.7e-08  Score=91.59  Aligned_cols=35  Identities=23%  Similarity=0.296  Sum_probs=32.2

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      ..+||||||||+|||+||.+|++.|.   +|+||||.+
T Consensus         4 ~~~DVvVIG~G~AGl~AAl~aa~~G~---~V~liEK~~   38 (336)
T d2bs2a2           4 QYCDSLVIGGGLAGLRAAVATQQKGL---STIVLSLIP   38 (336)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHTTTC---CEEEECSSC
T ss_pred             eecCEEEECcCHHHHHHHHHHHHCCC---CEEEEecCC
Confidence            45799999999999999999999987   899999975

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=98.52  E-value=2.9e-07  Score=85.28  Aligned_cols=66  Identities=24%  Similarity=0.328  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChhhhhcCCcc
Q 011351          251 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNS  319 (488)
Q Consensus       251 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~  319 (488)
                      +...+.+.+++.|++++.+++|++++.. ++++..|.+++| ++.||.||+|+|...+ ++++..|+..
T Consensus       150 l~~~l~~~a~~~gv~i~~~~~V~~i~~~-~~~v~~V~T~~g-~i~a~~VV~aaG~~s~-~l~~~~g~~l  215 (305)
T d1pj5a2         150 AVQLLIKRTESAGVTYRGSTTVTGIEQS-GGRVTGVQTADG-VIPADIVVSCAGFWGA-KIGAMIGMAV  215 (305)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETTE-EEECSEEEECCGGGHH-HHHHTTTCCC
T ss_pred             hhhhHHhhhhcccccccCCceEEEEEEe-CCEEEEEeccce-eEECCEEEEecchhHH-HHHHHcCCcc
Confidence            4455566678899999999999999965 677778888877 5999999999998764 6777766653

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=98.51  E-value=9.6e-08  Score=89.48  Aligned_cols=37  Identities=30%  Similarity=0.458  Sum_probs=33.4

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      ....||+|||+|+||++||.+|+++|.   +|+||||.+.
T Consensus        21 ~et~DVvVIG~G~aGl~aA~~la~~G~---~V~llEk~~~   57 (322)
T d1d4ca2          21 KETTDVVIIGSGGAGLAAAVSARDAGA---KVILLEKEPI   57 (322)
T ss_dssp             CEECSEEEECSSHHHHHHHHHHHTTTC---CEEEECSSSS
T ss_pred             CCcceEEEECcCHHHHHHHHHHHHCCC---cEEEEeCCCC
Confidence            345799999999999999999999987   8999999864

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.50  E-value=4.2e-08  Score=91.84  Aligned_cols=37  Identities=24%  Similarity=0.418  Sum_probs=33.6

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      .++.||||||+|+||++||+++++.|.   +|+||||.+.
T Consensus        17 ~e~~DVvVIGaG~aGl~AA~~aa~~G~---~V~vlEK~~~   53 (317)
T d1qo8a2          17 SETTQVLVVGAGSAGFNASLAAKKAGA---NVILVDKAPF   53 (317)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHHTC---CEEEECSSSS
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCC---cEEEEeCCCC
Confidence            346899999999999999999999987   8999999864

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.49  E-value=8.8e-07  Score=83.20  Aligned_cols=99  Identities=18%  Similarity=0.146  Sum_probs=72.1

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCcCccc--------------------------------------
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQR--------------------------------------  245 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g--~~v~lv~~~~~~l~~--------------------------------------  245 (488)
                      .-|+|+|||+|++|+-+|..|.+.+  .+|+++++++.+-..                                      
T Consensus         3 ~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~   82 (335)
T d2gv8a1           3 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPL   82 (335)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCC
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccccCCCCcccCCccccccccccccccccccccccccc
Confidence            3489999999999999999998876  489999998654100                                      


Q ss_pred             -------------------------cc--CHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCC---Cc---
Q 011351          246 -------------------------LF--TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---GS---  292 (488)
Q Consensus       246 -------------------------~~--~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~---g~---  292 (488)
                                               .+  .+++.+++....++.+..++++++|++++..+ ++. .|++.+   ++   
T Consensus        83 y~~l~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~yl~~~~~~~~~~I~~~t~V~~v~~~~-~~w-~Vt~~~~~~~~~~~  160 (335)
T d2gv8a1          83 YRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKD-GSW-VVTYKGTKAGSPIS  160 (335)
T ss_dssp             CTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEET-TEE-EEEEEESSTTCCEE
T ss_pred             chhhhcCCcHhhhhhhhhcCCcccccCCchHHHHHHHHHHHHHhhhcccCceEEEEEEecC-CEE-EEEEEecCCCCeEE
Confidence                                     00  12456677777777788999999999999764 432 244332   22   


Q ss_pred             EEEcCEEEEeecCc
Q 011351          293 TIDADTIVIGIGAK  306 (488)
Q Consensus       293 ~i~~D~vi~a~G~~  306 (488)
                      +..+|.||+|+|..
T Consensus       161 ~~~~d~VI~AtG~~  174 (335)
T d2gv8a1         161 KDIFDAVSICNGHY  174 (335)
T ss_dssp             EEEESEEEECCCSS
T ss_pred             EEEeeEEEEccccc
Confidence            35699999999974

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.47  E-value=2.7e-08  Score=90.69  Aligned_cols=104  Identities=16%  Similarity=0.226  Sum_probs=64.0

Q ss_pred             cCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCcc----------CChhhhhcCCcccCCCEEeC----
Q 011351          262 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP----------TVSPFERVGLNSSVGGIQVD----  327 (488)
Q Consensus       262 ~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p----------~~~~~~~~gl~~~~g~i~vd----  327 (488)
                      .+..+..++.+..+...+ ..+ .|.+.||+.+.+|.++++.....          ...-.+...+. ..+...++    
T Consensus       223 ~~~~i~~~~~v~~i~~~~-~~v-~v~~~~g~~~~~d~~~~~~~~~~l~~~~~~~~p~l~~~~~~ai~-~~~~~~~~~~~~  299 (347)
T d1b5qa1         223 VDPRLQLNKVVREIKYSP-GGV-TVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIY-QFWPVGVNRYEY  299 (347)
T ss_dssp             CCTTEESSCCEEEEEECS-SCE-EEEETTSCEEEESEEEECSCHHHHHTTSSEEESCCCHHHHHHHH-HSCBTTCCHHHH
T ss_pred             cccccccccccccccccC-ccE-EEEECCCCEEEcCEEEeecCHHHHhhcccccCCCCCHHHHHHHH-hcCCccccccch
Confidence            356788888999998653 333 58899999999999999865321          10000000000 11122222    


Q ss_pred             CCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 011351          328 GQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  376 (488)
Q Consensus       328 ~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~  376 (488)
                      +.++++.++||++||++....+.        ..+.|..+|..+|+.|++
T Consensus       300 ~~~~~~~~~v~~~GD~~~~~~~~--------~~~gA~~sG~~aA~~l~~  340 (347)
T d1b5qa1         300 DQLRAPVGRVYFTGEHTSEHYNG--------YVHGAYLSGIDSAEILIN  340 (347)
T ss_dssp             HHHHCCBTTEEECSGGGCSSCTT--------SHHHHHHHHHHHHHHHHH
T ss_pred             hhcccccCCEEEEEccccCcCCC--------HHHHHHHHHHHHHHHHHH
Confidence            24557889999999998743321        345577778877777754

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=98.45  E-value=6.6e-08  Score=90.12  Aligned_cols=37  Identities=24%  Similarity=0.315  Sum_probs=32.6

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      .+.||||||+|+||++||.++++++. +.+|+|+||..
T Consensus         4 ~~~DVlVIG~G~AGl~AA~~a~~~~~-g~~V~lleK~~   40 (311)
T d1kf6a2           4 FQADLAIVGAGGAGLRAAIAAAQANP-NAKIALISKVY   40 (311)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHCT-TCCEEEEESSC
T ss_pred             eecCEEEECccHHHHHHHHHHHHhCC-CCEEEEEECCC
Confidence            35899999999999999999999864 55899999975

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.41  E-value=1.5e-06  Score=80.39  Aligned_cols=91  Identities=22%  Similarity=0.371  Sum_probs=64.4

Q ss_pred             HHHHHcCcEEEcCCeEEEEEeCCC------CcEEEEEe---CCCc--EEEcCEEEEeecCccC-----------C----h
Q 011351          257 QLYQQNGVKFVKGASIKNLEAGSD------GRVAAVKL---EDGS--TIDADTIVIGIGAKPT-----------V----S  310 (488)
Q Consensus       257 ~~l~~~GV~v~~~~~v~~i~~~~~------~~v~~v~l---~~g~--~i~~D~vi~a~G~~p~-----------~----~  310 (488)
                      +.+++.+++++.++.+..+..+++      +++.++..   .+++  .+.++.||+|+|-...           +    .
T Consensus       146 ~~~~~~~v~~~~~~~~~~Li~~~~~~~~~~~rv~Gv~~~~~~~g~~~~~~ak~VilAtGG~~~~~~~~t~~~~~TGDG~~  225 (305)
T d1chua2         146 KALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASKVYQYTTNPDISSGDGIA  225 (305)
T ss_dssp             HHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCGGGSSSBSCGGGCSCHHHH
T ss_pred             HHHhccCcceeceeEEEEEEEEcCcccccCceEEEEEEEeCCCCcEEEEeecceEEeeeccccceeccCCCCceecccEe
Confidence            334567888999988888875432      25666655   2343  4789999999984321           1    1


Q ss_pred             hhhhcCCcc-cCCCEEeCCCCCCCCCCEEEEceecccC
Q 011351          311 PFERVGLNS-SVGGIQVDGQFRTRMPGIFAIGDVAAFP  347 (488)
Q Consensus       311 ~~~~~gl~~-~~g~i~vd~~~~t~~~~Ifa~GD~a~~~  347 (488)
                      ++...|... +.++|.+|++.+|+.|++||+|+++...
T Consensus       226 mA~~aGa~l~~m~~iq~~~~g~t~~~g~~a~G~~~~~~  263 (305)
T d1chua2         226 MAWRAGCRVANCGGVMVDDHGRTDVEGLYAIGEVSYTG  263 (305)
T ss_dssp             HHHHTTCCEECSCEEECCTTCBCSSBTEEECGGGEECS
T ss_pred             eccccceeeEecceeEECCcccCCCCCceecccEEEee
Confidence            344567765 4678999999999999999999986543

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.39  E-value=5.1e-07  Score=79.52  Aligned_cols=127  Identities=18%  Similarity=0.191  Sum_probs=80.7

Q ss_pred             CCCCCCCCcEEEecCHHHHHHHH---H---hhhcCCeEEEECCCHHHHHHHHHHHhC--------------------C-C
Q 011351          179 EKIGGYLPGVHYIRDVADADALI---S---SLEKAKKVVVVGGGYIGMEVAAAAVGW--------------------K-L  231 (488)
Q Consensus       179 ~~~g~~~~gv~~~~~~~~~~~~~---~---~~~~~~~vvVvG~G~~g~e~A~~l~~~--------------------g-~  231 (488)
                      .+||.+++|++...++.....-.   .   ....+++|+|||+|.+|+++|..+.+.                    + .
T Consensus         5 ~IPGedl~gV~~A~dfl~~~N~~p~~~~~~~~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~   84 (225)
T d1cjca1           5 DIPGEELPGVFSARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVK   84 (225)
T ss_dssp             CCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCC
T ss_pred             CCCCCCCCCcEeHHHHHHHHhCCccccccCccccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCC
Confidence            56888999998764433211100   0   012478999999999999999999873                    4 4


Q ss_pred             cEEEEecCCcCcccccCHHHHH-----------------------------------HHHHHH--------------HHc
Q 011351          232 DTTIIFPENHLLQRLFTPSLAQ-----------------------------------RYEQLY--------------QQN  262 (488)
Q Consensus       232 ~v~lv~~~~~~l~~~~~~~~~~-----------------------------------~~~~~l--------------~~~  262 (488)
                      +|+++.|+...-..+-.+++.+                                   .+.+.+              ...
T Consensus        85 ~V~iv~RRg~~~~~ft~~Elre~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (225)
T d1cjca1          85 TVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARRASASR  164 (225)
T ss_dssp             EEEEECSSCGGGCCCCHHHHHHHHTCTTEEEECCGGGGTTHHHHTTTSCHHHHHHHHHHHHHHHSCCCHHHHHHHHTCSE
T ss_pred             eEEEEEEcChHhCCCCchhhhcccccCCCcceechhhhccchhhhhhhhhHHHHHHHHHHHHHHhccccccccccccccc
Confidence            7999998864322211122111                                   111111              125


Q ss_pred             CcEEEcCCeEEEEEeCCCC-cEEEEEeC---------------CC--cEEEcCEEEEeecC
Q 011351          263 GVKFVKGASIKNLEAGSDG-RVAAVKLE---------------DG--STIDADTIVIGIGA  305 (488)
Q Consensus       263 GV~v~~~~~v~~i~~~~~~-~v~~v~l~---------------~g--~~i~~D~vi~a~G~  305 (488)
                      ++.+++...+.++..++++ ++..+++.               .|  .+++||+||.|+|+
T Consensus       165 ~i~~~f~~~p~~i~~~~~g~~v~~v~~~~~~~~~~~~~~~~~~tg~~~~ipadlVi~AiGf  225 (225)
T d1cjca1         165 AWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGY  225 (225)
T ss_dssp             EEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCCE
T ss_pred             ceEEEeecccccccccCCCCeEEEEEEEEeEECCCCCCCcccCCCcEEEEECCEEEECCCC
Confidence            6899999999999876554 56555442               12  25899999999996

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.38  E-value=1.3e-07  Score=84.98  Aligned_cols=58  Identities=17%  Similarity=0.209  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCC-CCcEEEEEeCCCcEEEcCEEEEeecCcc
Q 011351          249 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGS-DGRVAAVKLEDGSTIDADTIVIGIGAKP  307 (488)
Q Consensus       249 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~-~~~v~~v~l~~g~~i~~D~vi~a~G~~p  307 (488)
                      ..+.+.+.+.+++.|++|+++++|++|..++ ++++..| +.+|+++.||.||....+-|
T Consensus       236 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v-~~~g~~~~ad~VI~~~s~~~  294 (297)
T d2bcgg1         236 GELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGV-KTKLGTFKAPLVIADPTYFP  294 (297)
T ss_dssp             THHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEE-EETTEEEECSCEEECGGGCG
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEeeEEEEECCCCEEEEE-EcCCEEEECCEEEEChhhcc
Confidence            4577788889999999999999999997543 4556554 56788999999998755544

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.38  E-value=5e-07  Score=80.23  Aligned_cols=36  Identities=17%  Similarity=0.334  Sum_probs=32.9

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   89 (488)
                      .+||+||||||||++||.++++.|.   +|+|||+.+..
T Consensus         3 dYDviVIG~GpaGl~aA~~aa~~G~---kV~viE~~~~~   38 (235)
T d1h6va1           3 DFDLIIIGGGSGGLAAAKEAAKFDK---KVMVLDFVTPT   38 (235)
T ss_dssp             SEEEEEECCSHHHHHHHHHHGGGCC---CEEEECCCCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccCCC
Confidence            5899999999999999999999988   89999987653

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=98.35  E-value=1.3e-07  Score=89.00  Aligned_cols=36  Identities=25%  Similarity=0.297  Sum_probs=32.9

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      .+++||+|||+|+|||+||.+++++|.   +|+|+||.+
T Consensus         5 ~~~~DVlVVG~G~AGl~AAl~aa~~G~---~V~lleK~~   40 (330)
T d1neka2           5 VREFDAVVIGAGGAGMRAALQISQSGQ---TCALLSKVF   40 (330)
T ss_dssp             EEEESCEEECCSHHHHHHHHHHHHTTC---CCEEECSSC
T ss_pred             cccCCEEEECcCHHHHHHHHHHHHcCC---eEEEEeCCC
Confidence            346899999999999999999999987   799999976

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.34  E-value=1.4e-07  Score=85.46  Aligned_cols=38  Identities=21%  Similarity=0.402  Sum_probs=34.1

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   89 (488)
                      ++.+|+||||||++|+.+|..+++.|.   ++++||+.+..
T Consensus        40 ~k~yDvvVIGgG~aG~~aA~~~a~~G~---kv~vve~~~~l   77 (261)
T d1mo9a1          40 PREYDAIFIGGGAAGRFGSAYLRAMGG---RQLIVDRWPFL   77 (261)
T ss_dssp             CSCBSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSSS
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccCcc
Confidence            457899999999999999999999987   89999987654

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.26  E-value=3.4e-07  Score=82.49  Aligned_cols=38  Identities=16%  Similarity=0.360  Sum_probs=34.1

Q ss_pred             cCCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           47 FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        47 ~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      |+...+||||||||++|+++|++|+++|+   +|+|||++.
T Consensus         2 ~~~~~~kVvVIGaGiaGl~~A~~L~~~G~---~V~vier~~   39 (268)
T d1c0pa1           2 MMHSQKRVVVLGSGVIGLSSALILARKGY---SVHILARDL   39 (268)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSC
T ss_pred             CCCCCCcEEEECccHHHHHHHHHHHHCCC---CEEEEeCCC
Confidence            34556899999999999999999999987   899999975

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.24  E-value=8.8e-07  Score=80.86  Aligned_cols=38  Identities=21%  Similarity=0.346  Sum_probs=33.3

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHH-cCCCCCcEEEEcCCCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVE-HGMADGRLCIVSKEAYAP   90 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~-~g~~~~~V~lie~~~~~~   90 (488)
                      ..+||+|||||+|||+||.+|++ .|+   +|+|+|+++...
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~---~V~vlE~~~~~G   70 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNV---QVAIIEQSVSPG   70 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTS---CEEEEESSSSCC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCC---eEEEEecCCCCC
Confidence            46899999999999999999987 477   899999987643

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=98.22  E-value=4.5e-07  Score=85.12  Aligned_cols=40  Identities=23%  Similarity=0.310  Sum_probs=35.7

Q ss_pred             CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011351           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (488)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~   90 (488)
                      ....++|+|||||+|||+||..|+++|+   +|+|+|+++...
T Consensus        27 ~~~pkkV~IIGaG~aGLsaA~~L~~~G~---~V~vlE~~~~~G   66 (370)
T d2iida1          27 TSNPKHVVIVGAGMAGLSAAYVLAGAGH---QVTVLEASERPG   66 (370)
T ss_dssp             CSSCCEEEEECCBHHHHHHHHHHHHHTC---EEEEECSSSSSB
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHCCC---CEEEEeCCCCCC
Confidence            4566899999999999999999999998   899999987653

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.21  E-value=5e-07  Score=81.96  Aligned_cols=36  Identities=25%  Similarity=0.382  Sum_probs=32.3

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   89 (488)
                      +||+|||||+|||+||..|+++|++  +|+|+|+++..
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~~--~V~vlE~~~~~   36 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGIT--DLLILEATDHI   36 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCC--CEEEECSSSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCC--cEEEEECCCCC
Confidence            5899999999999999999999863  69999998764

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=5.3e-07  Score=85.07  Aligned_cols=40  Identities=20%  Similarity=0.361  Sum_probs=35.7

Q ss_pred             CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011351           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (488)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~   90 (488)
                      ..+++||+|||||+|||+||+.|+++|+   +|+|+|+++...
T Consensus         2 ~~~~~kViVIGaG~aGL~aA~~L~~~G~---~V~VlEa~~r~G   41 (449)
T d2dw4a2           2 TKKTGKVIIIGSGVSGLAAARQLQSFGM---DVTLLEARDRVG   41 (449)
T ss_dssp             SSCCCEEEEECCBHHHHHHHHHHHHTTC---EEEEECSSSSSB
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhCCC---CEEEEeCCCCCc
Confidence            3567899999999999999999999998   899999988754

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.21  E-value=4.1e-06  Score=74.75  Aligned_cols=34  Identities=18%  Similarity=0.127  Sum_probs=31.6

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcC
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  242 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~  242 (488)
                      .|+|||+|..|+-+|..|++.|.+|+++++++.+
T Consensus         7 DviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~   40 (297)
T d2bcgg1           7 DVIVLGTGITECILSGLLSVDGKKVLHIDKQDHY   40 (297)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCC
Confidence            4899999999999999999999999999998654

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.20  E-value=7e-06  Score=73.72  Aligned_cols=101  Identities=17%  Similarity=0.278  Sum_probs=74.7

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc-----ccCHHHHH---------------------------
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----LFTPSLAQ---------------------------  253 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~-----~~~~~~~~---------------------------  253 (488)
                      ..++|+|||+|+.|+-+|..|++.|.+|+++++.+.+...     .+.+....                           
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~   82 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTG   82 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTC
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhccCCCcceeEeccCC
Confidence            3578999999999999999999999999999987543221     01111111                           


Q ss_pred             -----------------HHH-HHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351          254 -----------------RYE-QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  308 (488)
Q Consensus       254 -----------------~~~-~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~  308 (488)
                                       .+. ..-...++.++++..++.+...+++  ..+.++||+++.+|++|.|.|....
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--v~v~~~dG~~~~~d~~v~adG~~s~  153 (265)
T d2voua1          83 ERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSET--VQMRFSDGTKAEANWVIGADGGASV  153 (265)
T ss_dssp             CEEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSC--EEEEETTSCEEEESEEEECCCTTCH
T ss_pred             ceecccccccccchhHHHHHHHHHhcccceeecCcEEEEEEeeCCc--eEEEECCCCEEEEEEEecccccccc
Confidence                             111 1223457889999999999875443  3688999999999999999998654

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.19  E-value=5.2e-06  Score=72.15  Aligned_cols=96  Identities=19%  Similarity=0.344  Sum_probs=68.4

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCC-cC----------------cccccC---H---HHHHHHHHHHHH-cCc
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN-HL----------------LQRLFT---P---SLAQRYEQLYQQ-NGV  264 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~-~~----------------l~~~~~---~---~~~~~~~~~l~~-~GV  264 (488)
                      .|+|||+|+.|+|.|.+.++.|.++.+++.+. .+                +.+..+   +   .....+++.++. .++
T Consensus         4 DVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a~raQ~k~~l~~~~nL   83 (230)
T d2cula1           4 QVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRPL   83 (230)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTTE
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhhHHHHHHHHHhhhcCH
Confidence            48999999999999999999999999997641 11                000001   1   122233444433 488


Q ss_pred             EEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCc
Q 011351          265 KFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  306 (488)
Q Consensus       265 ~v~~~~~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~  306 (488)
                      .++.+. |..+.. +++++.+|.+.+|.++.|..||++||.-
T Consensus        84 ~i~q~~-V~dli~-e~~~v~gV~t~~G~~~~AkaVILtTGTF  123 (230)
T d2cula1          84 HLFQAT-ATGLLL-EGNRVVGVRTWEGPPARGEKVVLAVGSF  123 (230)
T ss_dssp             EEEECC-EEEEEE-ETTEEEEEEETTSCCEECSEEEECCTTC
T ss_pred             HHHhcc-ceeeEe-cccceeeEEeccccEEEEeEEEEccCcc
Confidence            888764 666654 3677889999999999999999999954

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.18  E-value=6.6e-07  Score=78.82  Aligned_cols=36  Identities=17%  Similarity=0.309  Sum_probs=33.3

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      ++|||+|||||||||+||.++++.|.   +|+|||+...
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar~G~---~V~viE~~~~   37 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQLGL---KTALIEKYKG   37 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTC---CEEEEECCBC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCC---eEEEEecccC
Confidence            57999999999999999999999998   8999998754

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.17  E-value=5.5e-07  Score=83.43  Aligned_cols=103  Identities=12%  Similarity=0.089  Sum_probs=62.1

Q ss_pred             CcEEEcCCeEEEEEeCCCCc----EEEEEe-----CCCcEEEcCEEEEeecCccCCh-------------hhhhcCCccc
Q 011351          263 GVKFVKGASIKNLEAGSDGR----VAAVKL-----EDGSTIDADTIVIGIGAKPTVS-------------PFERVGLNSS  320 (488)
Q Consensus       263 GV~v~~~~~v~~i~~~~~~~----v~~v~l-----~~g~~i~~D~vi~a~G~~p~~~-------------~~~~~gl~~~  320 (488)
                      +.++++++.|++|+...++.    ...+..     .+++.+++|.||++++...-..             .+........
T Consensus       243 ~~~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~Vi~a~p~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  322 (373)
T d1seza1         243 EDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKSMKIAKRGNPFLLNFIPEVYGHNY  322 (373)
T ss_dssp             TTTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHHHHHTSEEESSSSBCCCTTSCCCCCTTH
T ss_pred             cceEecCCEEEEEEEeCCcccccccceEEecccCCCCceEEECCEEEECCchHHhhhcccccCCCccchhhhccccccCC
Confidence            67899999999998654321    112222     2345789999999987422100             0000000000


Q ss_pred             CCCEEeCCCCCCCCCCEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 011351          321 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  376 (488)
Q Consensus       321 ~g~i~vd~~~~t~~~~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~~  376 (488)
                      ++.+.+++.++|+.|+||++||+...+           .+..|..+|+.+|..|+.
T Consensus       323 ~~~~~~~~~~~t~~pglf~aGd~~~g~-----------~~~~A~~~G~~aA~~i~~  367 (373)
T d1seza1         323 DSVLDAIDKMEKNLPGLFYAGNHRGGL-----------SVGKALSSGCNAADLVIS  367 (373)
T ss_dssp             HHHHHHHHHHHHHSTTEEECCSSSSCS-----------SHHHHHHHHHHHHHHHHH
T ss_pred             CcEeecccccCCCCCCEEEEecCCCch-----------hHHHHHHHHHHHHHHHHH
Confidence            112334456778899999999998642           345677888888887764

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.17  E-value=7.1e-07  Score=76.71  Aligned_cols=37  Identities=22%  Similarity=0.405  Sum_probs=33.3

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   89 (488)
                      ++||+|||||++||+||.+|+++|++  +|+|+|+.+..
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~--~V~v~E~~~~~   40 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYS--DITIFEKQEYV   40 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCC--CEEEEESSSSC
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCC--eEEEEEecCcc
Confidence            57999999999999999999999973  59999998764

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.13  E-value=7e-07  Score=82.39  Aligned_cols=38  Identities=16%  Similarity=0.250  Sum_probs=34.5

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY   91 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~   91 (488)
                      |+||||||||++|++||+.|++.|.   +|+|+|++++...
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~g~---~V~iiEk~~~iGG   38 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKLNK---KVLVIEKRNHIGG   38 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTC---CEEEECSSSSSSG
T ss_pred             CccEEEECCcHHHHHHHHHHHhCCC---cEEEEECCCCccc
Confidence            5799999999999999999999987   8999999987643

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.12  E-value=5e-07  Score=79.97  Aligned_cols=38  Identities=32%  Similarity=0.422  Sum_probs=34.2

Q ss_pred             CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      +.+++||+||||||||++||.++++.|.   +|+|||+.+.
T Consensus         2 m~~~yDviVIG~GpAGl~aA~~aa~~G~---kV~lie~~~~   39 (233)
T d1v59a1           2 INKSHDVVIIGGGPAGYVAAIKAAQLGF---NTACVEKRGK   39 (233)
T ss_dssp             EEEEEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSS
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHHCCC---cEEEEEecCC
Confidence            3467999999999999999999999987   8999998764

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=98.11  E-value=3e-05  Score=71.52  Aligned_cols=90  Identities=22%  Similarity=0.413  Sum_probs=65.1

Q ss_pred             HHHHHcCcEEEcCCeEEEEEeCCCCcEEEEE---eCCCc--EEEcCEEEEeecC-----ccCC----------hhhhhcC
Q 011351          257 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVK---LEDGS--TIDADTIVIGIGA-----KPTV----------SPFERVG  316 (488)
Q Consensus       257 ~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~---l~~g~--~i~~D~vi~a~G~-----~p~~----------~~~~~~g  316 (488)
                      +..+..+|+++.++.+.++..+ ++++.++.   ..+|+  .+.++.||+|||-     ...+          .++...|
T Consensus       143 ~~~~~~~v~i~~~~~v~~Ll~d-~g~v~Gvv~~~~~~g~~~~~~AkaVILATGG~g~~y~~ttn~~~~tGDG~~mA~~aG  221 (311)
T d1kf6a2         143 TSLQFPQIQRFDEHFVLDILVD-DGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHG  221 (311)
T ss_dssp             HHTTCTTEEEEETEEEEEEEEE-TTEEEEEEEEETTTTEEEEEECSCEEECCCCCGGGSSSBSSCTTCSCHHHHHHHTTT
T ss_pred             HHHccCcceeEeeeEeeeeEec-CCcceeEEEEEcCCCcEEEEECCEEEEcCCCccccccccCCCCCcCcHHHHHHHhcc
Confidence            3344468999999999999865 57776664   34665  4689999999984     2111          1234556


Q ss_pred             Ccc-cCCCEEeCCCCCCCCCCEEEEceecccC
Q 011351          317 LNS-SVGGIQVDGQFRTRMPGIFAIGDVAAFP  347 (488)
Q Consensus       317 l~~-~~g~i~vd~~~~t~~~~Ifa~GD~a~~~  347 (488)
                      ... +-.+|.++++..+..+++|+.|++..-.
T Consensus       222 a~l~dme~iq~~p~~~~~~~~~~~~~~~~~~g  253 (311)
T d1kf6a2         222 VPLRDMGGIETDQNCETRIKGLFAVGECSSVG  253 (311)
T ss_dssp             CCEESCCEEECCTTSBCSSBTEEECGGGEECS
T ss_pred             cceeecccccccccchhcccCCCcCcceeeee
Confidence            654 4578999999989999999999988643

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.10  E-value=1e-06  Score=81.85  Aligned_cols=39  Identities=21%  Similarity=0.398  Sum_probs=35.2

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY   91 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~   91 (488)
                      ++++|+|||||++||+||..|++.|+   +|+|+|++++...
T Consensus         1 k~KKI~IIGaG~sGL~aA~~L~k~G~---~V~viEk~~~iGG   39 (314)
T d2bi7a1           1 KSKKILIVGAGFSGAVIGRQLAEKGH---QVHIIDQRDHIGG   39 (314)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTC---EEEEEESSSSSSG
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCC---CEEEEECCCCCcC
Confidence            36899999999999999999999887   8999999998653

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.09  E-value=3.2e-06  Score=69.68  Aligned_cols=75  Identities=19%  Similarity=0.143  Sum_probs=54.0

Q ss_pred             CCeEEEE--cCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHh
Q 011351           51 NREFVIV--GGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (488)
Q Consensus        51 ~~~vvII--GgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (488)
                      ...++|+  |||+.|+.+|..|+++|.   +|||+++.+.....       . ..   ..              .....+
T Consensus        39 ~~~vvi~d~ggg~ig~e~A~~la~~G~---~Vtlv~~~~~~~~~-------~-~~---~~--------------~~~~~~   90 (156)
T d1djqa2          39 GKRVVILNADTYFMAPSLAEKLATAGH---EVTIVSGVHLANYM-------H-FT---LE--------------YPNMMR   90 (156)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHHTTC---EEEEEESSCTTTHH-------H-HT---TC--------------HHHHHH
T ss_pred             CCceEEEecCCChHHHHHHHHHHHcCC---eEEEEecCCccccc-------c-ch---hH--------------HHHHHH
Confidence            4566666  999999999999999997   89999987543110       0 00   00              123456


Q ss_pred             HHHHCCCeEEeCCcEEEEeCCCcEE
Q 011351          129 WYKEKGIEMIYQDPVTSIDIEKQTL  153 (488)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~~~v  153 (488)
                      .+.+.+++++.++++.+++.+...+
T Consensus        91 ~l~~~GV~i~~~~~v~~i~~~~v~l  115 (156)
T d1djqa2          91 RLHELHVEELGDHFCSRIEPGRMEI  115 (156)
T ss_dssp             HHHHTTCEEEETEEEEEEETTEEEE
T ss_pred             HHhhccceEEeccEEEEecCcceEE
Confidence            7788999999999999998765433

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.06  E-value=5.1e-06  Score=68.91  Aligned_cols=46  Identities=17%  Similarity=0.284  Sum_probs=35.8

Q ss_pred             HhHHHHCCCeEEeCCcEEEEeCCCcEEEeCCCc-EEEeccEEeccCC
Q 011351          127 PEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK-LLKYGSLIVATGC  172 (488)
Q Consensus       127 ~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~-~i~yd~lVlAtG~  172 (488)
                      ....+..+++++.++.+..++.+...+...+.+ .+++|.+|+|+|.
T Consensus       115 ~~~~~~~gv~~~~~~~v~~i~~~gv~~~~~g~e~~i~aD~Vv~A~Gq  161 (162)
T d1ps9a2         115 RTTLLSRGVKMIPGVSYQKIDDDGLHVVINGETQVLAVDNVVICAGQ  161 (162)
T ss_dssp             HHHHHHTTCEEECSCEEEEEETTEEEEEETTEEEEECCSEEEECCCE
T ss_pred             HHHHhhCCeEEEeeeEEEEEcCCCCEEecCCeEEEEECCEEEECCCC
Confidence            355678899999999999999776655554333 4899999999993

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.06  E-value=1.6e-06  Score=76.04  Aligned_cols=37  Identities=24%  Similarity=0.399  Sum_probs=33.7

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   89 (488)
                      +.+||+||||||||++||.++++.|.   +|+|||+++..
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~G~---kV~vie~~~~~   38 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQLGF---KTTCIEKRGAL   38 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTC---CEEEEECSSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCC---cEEEEEecCCC
Confidence            57999999999999999999999987   89999987653

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.03  E-value=3.4e-06  Score=73.54  Aligned_cols=63  Identities=19%  Similarity=0.209  Sum_probs=42.9

Q ss_pred             CCCCCCCCcEEEecCHHHHHHHHH------hhhcCCeEEEECCCHHHHHHHHHHH--------------------hCCC-
Q 011351          179 EKIGGYLPGVHYIRDVADADALIS------SLEKAKKVVVVGGGYIGMEVAAAAV--------------------GWKL-  231 (488)
Q Consensus       179 ~~~g~~~~gv~~~~~~~~~~~~~~------~~~~~~~vvVvG~G~~g~e~A~~l~--------------------~~g~-  231 (488)
                      .+||.+++|++...++...-.-..      ....+++|+|||+|.+|+++|..+.                    +.+. 
T Consensus         5 ~IPGedl~gV~~A~dfl~~~N~~p~~~~~~~~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~   84 (216)
T d1lqta1           5 NIPGEDLPGSIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQ   84 (216)
T ss_dssp             CCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCC
T ss_pred             CCCCCCCCCcEeHHHHHHHHhCCccccccCccccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCc
Confidence            468889999987643322111000      0124789999999999999999876                    3443 


Q ss_pred             cEEEEecCCc
Q 011351          232 DTTIIFPENH  241 (488)
Q Consensus       232 ~v~lv~~~~~  241 (488)
                      +|+++.|+..
T Consensus        85 ~V~iv~RRg~   94 (216)
T d1lqta1          85 EVVIVGRRGP   94 (216)
T ss_dssp             EEEEECSSCG
T ss_pred             eEEEEEECCh
Confidence            6999988753

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.98  E-value=1.6e-05  Score=60.58  Aligned_cols=77  Identities=14%  Similarity=0.149  Sum_probs=56.9

Q ss_pred             hcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEE
Q 011351          205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA  284 (488)
Q Consensus       205 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~  284 (488)
                      ..+|+|+|||+|.+|+++|..|++.+.+++++.+++.....               ..++...  ..+.+++..  ++  
T Consensus        30 f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~~~~~~---------------~~~~~~~--~~i~~~~~~--~~--   88 (107)
T d2gv8a2          30 FVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGDIQ---------------NESLQQV--PEITKFDPT--TR--   88 (107)
T ss_dssp             GTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCSCB---------------CSSEEEE--CCEEEEETT--TT--
T ss_pred             cCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecCccccc---------------cccceec--CCeeEEecC--CC--
Confidence            47899999999999999999999999998887776644321               1123332  246677643  22  


Q ss_pred             EEEeCCCcEEE-cCEEEEe
Q 011351          285 AVKLEDGSTID-ADTIVIG  302 (488)
Q Consensus       285 ~v~l~~g~~i~-~D~vi~a  302 (488)
                      .+.+.||+++. .|.||+|
T Consensus        89 ~v~~~dG~~~~~vD~Ii~C  107 (107)
T d2gv8a2          89 EIYLKGGKVLSNIDRVIYC  107 (107)
T ss_dssp             EEEETTTEEECCCSEEEEC
T ss_pred             EEEEcCCCEEeCCCEEEEC
Confidence            57899999886 6999987

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.98  E-value=2.2e-06  Score=78.60  Aligned_cols=35  Identities=14%  Similarity=0.328  Sum_probs=32.2

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      |+.+|+||||||+|+++|..|+++|+   +|+|||+.+
T Consensus         1 mk~~V~IvGaGp~Gl~~A~~L~~~G~---~v~vlE~~~   35 (292)
T d1k0ia1           1 MKTQVAIIGAGPSGLLLGQLLHKAGI---DNVILERQT   35 (292)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHHTC---CEEEECSSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCC---CEEEEeCCC
Confidence            35699999999999999999999998   899999875

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=97.97  E-value=2.2e-06  Score=75.66  Aligned_cols=36  Identities=25%  Similarity=0.436  Sum_probs=33.0

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      ..+||+|||||||||+||.+|++.|.   +|+|||+.+.
T Consensus         5 ~dyDviIIG~GPaGlsaA~~aa~~G~---~V~viE~~~~   40 (229)
T d1ojta1           5 AEYDVVVLGGGPGGYSAAFAAADEGL---KVAIVERYKT   40 (229)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSC
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCC---eEEEEeccCC
Confidence            46899999999999999999999987   8999998764

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=97.95  E-value=5.2e-05  Score=70.48  Aligned_cols=123  Identities=21%  Similarity=0.308  Sum_probs=68.0

Q ss_pred             HHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEE---EEeCCCc--EEEcCEEEEeecCccC-----C--h--------hh
Q 011351          253 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA---VKLEDGS--TIDADTIVIGIGAKPT-----V--S--------PF  312 (488)
Q Consensus       253 ~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~---v~l~~g~--~i~~D~vi~a~G~~p~-----~--~--------~~  312 (488)
                      ..+.+..++.+++++.+..+..+...+++.+..   ....+|+  .+.++.||+|+|--..     +  .        +.
T Consensus       147 ~~L~~~~~~~~v~~~~~~~~~~l~~~~~~~~~g~~~~~~~~g~~~~~~a~~vIlAtGG~~~ly~~ttn~~~~tGdG~~~a  226 (330)
T d1neka2         147 HTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMA  226 (330)
T ss_dssp             HHHHHHHHHTTCEEECSEEEEEEEECTTSCEEEEEEEETTTCCEEEEEESCEEECCCCCGGGSSSBSSCTTCSCHHHHHH
T ss_pred             HHHHHHHHhcCCeEEEEEEEEEeeeeccccceeeeeEEccCCcEEEEeccEEEEcCCCccccccCcCCCCccEeHHHHHH
Confidence            334455566788988888888876555555433   3345565  4789999999994321     0  0        12


Q ss_pred             hhcCCcc-c-CCCEEeCC---------CCC-CCCCCEEEEceecccCCccCCccc---ccccHHHHHHHHHHHHHHHh
Q 011351          313 ERVGLNS-S-VGGIQVDG---------QFR-TRMPGIFAIGDVAAFPLKMYDRTA---RVEHVDHARQSAQHCIKALL  375 (488)
Q Consensus       313 ~~~gl~~-~-~g~i~vd~---------~~~-t~~~~Ifa~GD~a~~~~~~~~~~~---~~~~~~~A~~~g~~~a~~i~  375 (488)
                      ...|... | .++++.+.         ..+ +-.|++||+|+|+.......++..   -.+.+-.++..|+.+++.+.
T Consensus       227 ~~aGa~l~d~~~~~~~~~~~~~~~~~~~g~~~v~~gl~a~Ge~a~~g~HganrL~~nsl~~~~v~g~~ag~~~~~~~~  304 (330)
T d1neka2         227 IRAGVPVQDMMGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQESIA  304 (330)
T ss_dssp             HTTTCCEESECCBEEBCTTCEEEEECSSSCEEEEEEEEECSSSEECSSSTTSCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCCccccccccccccccceeecccCCCceecccccccCcccccccccccccccccHHHHHHHHHHHHHHHHHHhh
Confidence            2333332 1 34444332         211 246899999999875433223222   12223345555566665554

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.92  E-value=2.9e-06  Score=74.31  Aligned_cols=34  Identities=29%  Similarity=0.376  Sum_probs=31.9

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      ++||+||||||||++||.++++.|.   +|+|||+..
T Consensus         3 ~~DviVIG~GpaGl~aA~~aar~G~---kV~vIEk~~   36 (223)
T d1ebda1           3 ETETLVVGAGPGGYVAAIRAAQLGQ---KVTIVEKGN   36 (223)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCC---EEEEEecCC
Confidence            5899999999999999999999987   899999875

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.85  E-value=6.3e-06  Score=72.82  Aligned_cols=38  Identities=16%  Similarity=0.217  Sum_probs=32.8

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      +++|||+||||||||++||.++++.+.+  .|+|+|+...
T Consensus         1 ~~~YDviIIG~GpaGl~aA~~aa~~g~k--~V~iie~~~~   38 (238)
T d1aoga1           1 SKIFDLVVIGAGSGGLEAAWNAATLYKK--RVAVIDVQMV   38 (238)
T ss_dssp             CCSBSEEEECCSHHHHHHHHHHHHTSCC--CEEEEESCSS
T ss_pred             CCccCEEEECCCHHHHHHHHHHHHcCCC--EEEEEEeecc
Confidence            3679999999999999999999998753  6999997644

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.85  E-value=6e-06  Score=74.89  Aligned_cols=104  Identities=19%  Similarity=0.167  Sum_probs=59.3

Q ss_pred             HHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCC----cEEEcCEEEEeecCccCChhhhhcCCcccCCCEEeCCCCCCCCC
Q 011351          260 QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG----STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMP  335 (488)
Q Consensus       260 ~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g----~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~  335 (488)
                      ...++.+.++++++.+...++ .+ .+.+.+|    +++.+|++|.|-|......  +......   .............
T Consensus       117 ~~~~~~~~~~~~v~~~~~~~~-~v-~v~~~~g~~~~~~~~ad~vi~ADG~~S~vr--~~~~~~~---~~~~~~~~~~~~~  189 (288)
T d3c96a1         117 RLGQQAVRTGLGVERIEERDG-RV-LIGARDGHGKPQALGADVLVGADGIHSAVR--AHLHPDQ---RPLRDPLPHWGRG  189 (288)
T ss_dssp             HHCTTSEEESEEEEEEEEETT-EE-EEEEEETTSCEEEEEESEEEECCCTTCHHH--HHHCTTC---CCCCCCCSCCCBT
T ss_pred             hccCeeeecCcEEEEeeecCC-cE-EEEEEcCCCCeEEEeeceeeccCCccceee--eeecccc---ccccccccccccC
Confidence            345788889999988886543 33 4555554    4799999999999865321  1111100   0001111123456


Q ss_pred             CEEEEceecccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 011351          336 GIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  375 (488)
Q Consensus       336 ~Ifa~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~i~  375 (488)
                      ++..+||.+....+..|..     ...|..-+..++..+.
T Consensus       190 ~~~~~gda~h~~~p~~g~G-----~~~ai~d~~~l~~~l~  224 (288)
T d3c96a1         190 RITLLGDAAHLMYPMGANG-----ASQAILDGIELAAALA  224 (288)
T ss_dssp             TEEECTHHHHCCCSSTTCT-----HHHHHHHHHHHHHHHH
T ss_pred             cceecccccceeCCccccc-----hhhhhhhHHHHHHHHh
Confidence            7899999997554443331     2335555555555553

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=5.5e-06  Score=72.43  Aligned_cols=34  Identities=26%  Similarity=0.532  Sum_probs=31.8

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      .+|++||||||||++||.++++.|.   +|+|||++.
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar~G~---kV~vIEk~~   36 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAELGA---RAAVVESHK   36 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSC
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC---EEEEEeccC
Confidence            5899999999999999999999987   899999875

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.82  E-value=0.00011  Score=66.02  Aligned_cols=36  Identities=17%  Similarity=0.273  Sum_probs=32.4

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCcCc
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENHLL  243 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~-~v~lv~~~~~~l  243 (488)
                      -+|+|||+|+.|+-+|..|++.|. +|+++++.+.+.
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~   38 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIR   38 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCC
Confidence            369999999999999999999996 899999987654

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.79  E-value=8.4e-05  Score=67.53  Aligned_cols=125  Identities=17%  Similarity=0.169  Sum_probs=80.9

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc------cccC----------------------------------
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------RLFT----------------------------------  248 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~------~~~~----------------------------------  248 (488)
                      +|+|||+|++|+-+|..|++.|.+|+++++.+....      ..+.                                  
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~~~   83 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQR   83 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETTEE
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCceEEEECHHHHHHHHHcCchHHHHhhcccccceEEEecccc
Confidence            699999999999999999999999999998742110      0001                                  


Q ss_pred             -------------------HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEeCCCc--EEEcCEEEEeecCcc
Q 011351          249 -------------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKP  307 (488)
Q Consensus       249 -------------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l~~g~--~i~~D~vi~a~G~~p  307 (488)
                                         ..+.+.+.+.+++.+..++.+.........++..+......+|+  ++.||+||-|.|.+.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~i~a~~vVgADG~~S  163 (292)
T d1k0ia1          84 RRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFHG  163 (292)
T ss_dssp             EEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEECCCTTC
T ss_pred             cccccccccccccceeecHHHHHHHHHHHHHhCCCcEEEcceeeeeeeeccCceEEEEecCCcEEEEEeCEEEECCCCCC
Confidence                               12445556666777777877776665554444444322335554  578999999999876


Q ss_pred             CChhhhhcCCcccCCCEEeCCCCCCCCCCEEEEceecccC
Q 011351          308 TVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFP  347 (488)
Q Consensus       308 ~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Ifa~GD~a~~~  347 (488)
                      ...  +..+...            ......+.+||++...
T Consensus       164 ~vR--~~i~~~~------------~~~~~~~~~~~~~~~~  189 (292)
T d1k0ia1         164 ISR--QSIPAER------------MQHGRLFLAGDAAHIV  189 (292)
T ss_dssp             STG--GGSCGGG------------SEETTEEECGGGTEEC
T ss_pred             ccc--ceeeecc------------ccccccccceeeeeec
Confidence            432  1111111            1234667888887643

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.75  E-value=1.6e-05  Score=69.93  Aligned_cols=90  Identities=17%  Similarity=0.193  Sum_probs=63.5

Q ss_pred             CeEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCcCccc---------ccCHHHHHHHHHHHHHcCcEEEcCCeEEEEE
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQR---------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLE  276 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~--g~~v~lv~~~~~~l~~---------~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~  276 (488)
                      .+|+|||+|+.|+.+|..|++.  +.+|+++++.+.+-..         .....+.......+++.|++++.++.+..  
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--   79 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVGR--   79 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBTT--
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehhhccccccccccchhhhhhhhhcCCeeEEeeEEeCc--
Confidence            4799999999999999999764  6799999999865321         12234556667778889999998876511  


Q ss_pred             eCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351          277 AGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  308 (488)
Q Consensus       277 ~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~  308 (488)
                         +-..  ..+    .-.+|.+++|+|..+.
T Consensus        80 ---~~~~--~~l----~~~~d~v~~a~Ga~~~  102 (230)
T d1cjca2          80 ---DVTV--QEL----QDAYHAVVLSYGAEDK  102 (230)
T ss_dssp             ---TBCH--HHH----HHHSSEEEECCCCCEE
T ss_pred             ---cccH--HHH----HhhhceEEEEeecccc
Confidence               1000  001    1258999999998764

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.73  E-value=8.7e-06  Score=72.18  Aligned_cols=38  Identities=13%  Similarity=0.227  Sum_probs=33.2

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   89 (488)
                      +++|||||||||||++||.++++.|.+  .|+|+|++...
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~~g~k--~V~vie~~~~~   39 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAASLHKK--RVAVIDLQKHH   39 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCC--CEEEEESCSSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCC--EEEEEEEeccC
Confidence            579999999999999999999998753  69999987653

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.72  E-value=5.2e-05  Score=61.69  Aligned_cols=36  Identities=19%  Similarity=0.346  Sum_probs=30.4

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      ...+|||||||.+|+-+|..+.++|.+  .|+++.+.+
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~--~V~vi~rr~   79 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRCGAR--RVFLVFRKG   79 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCS--EEEEECSSC
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCc--ceeEEEeCC
Confidence            356899999999999999999998853  688987654

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=97.69  E-value=3.7e-05  Score=67.44  Aligned_cols=36  Identities=17%  Similarity=0.224  Sum_probs=32.0

Q ss_pred             hcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 011351          205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  240 (488)
Q Consensus       205 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~  240 (488)
                      ..+|+|+|||+|.+|+++|..+.+.+.+++++.+.+
T Consensus        30 ~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~   65 (235)
T d1w4xa2          30 FSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP   65 (235)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CCCCEEEEECCCccHHHHHHHHHhhhcccccccccc
Confidence            378999999999999999999999998888776664

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=97.68  E-value=1.3e-05  Score=76.02  Aligned_cols=89  Identities=15%  Similarity=0.277  Sum_probs=58.6

Q ss_pred             HHcCcEEEcCCeEEEEEeCC-CCcEEEEEe---CCCc--EEEcCEEEEeecCccCChhhhhcCCcc--------------
Q 011351          260 QQNGVKFVKGASIKNLEAGS-DGRVAAVKL---EDGS--TIDADTIVIGIGAKPTVSPFERVGLNS--------------  319 (488)
Q Consensus       260 ~~~GV~v~~~~~v~~i~~~~-~~~v~~v~l---~~g~--~i~~D~vi~a~G~~p~~~~~~~~gl~~--------------  319 (488)
                      .+.|+++++++.|++|..++ ++++++|..   .+|+  ++.++.||++.|..-...+|..+++..              
T Consensus       229 ~~~~~~l~~~a~V~~i~~~~~~~r~~gV~~~d~~~g~~~~i~a~~vilaaGa~~tp~lL~~Sg~~~~~~~~~~~~~~~~~  308 (379)
T d2f5va1         229 PEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQLGRPNPTNPPELLP  308 (379)
T ss_dssp             EEEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEEEEEEEEECSCHHHHHHHHHHTTSSCCSSCCTTSCCSSST
T ss_pred             cCCCCEEecCCEEEEEEEeCCCCEEEEEEEEECCCCEEEEEeceEEEeccCccCCHHHHhhcccccccccccccCccccc
Confidence            34579999999999998654 346777764   4455  578999999999754444443332210              


Q ss_pred             ---------cC--CCEEeCCCCCC-CCCCEEEEceecccCCc
Q 011351          320 ---------SV--GGIQVDGQFRT-RMPGIFAIGDVAAFPLK  349 (488)
Q Consensus       320 ---------~~--g~i~vd~~~~t-~~~~Ifa~GD~a~~~~~  349 (488)
                               ++  ..=+||+++++ +++|+|++| +.-+|..
T Consensus       309 ~~g~h~mG~~~~~~~~vvd~~~~v~g~~nlyv~d-~sv~p~~  349 (379)
T d2f5va1         309 SLGSHRMGFDEKEDNCCVNTDSRVFGFKNLFLGG-CGNIPTA  349 (379)
T ss_dssp             TTTBTCBCSCTTTTTCSBCTTCBBTTCSSEEECS-GGGCCSC
T ss_pred             ccceeecccCCCCCCccCCCCCcccccCCEEEeC-CcccCCc
Confidence                     00  11368888888 789999855 5555543

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.64  E-value=4.5e-06  Score=73.82  Aligned_cols=99  Identities=18%  Similarity=0.137  Sum_probs=60.8

Q ss_pred             hcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccccc----------CHHHHHHHHHHHHHcCcEEEcCCeEEE
Q 011351          205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLF----------TPSLAQRYEQLYQQNGVKFVKGASIKN  274 (488)
Q Consensus       205 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~----------~~~~~~~~~~~l~~~GV~v~~~~~v~~  274 (488)
                      ...++|+|||+|+.|+.+|..|+++|.+|+++++.+.+-....          ...........+.+.+.....    ..
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~  122 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKE----SQ  122 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTSTTCGGGGHHHHHHHHHHHHHHTTCTT----CE
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCccccccccceeecccccchhHHHHHHHHhhccee----ee
Confidence            3578999999999999999999999999999999876643210          112233333333332221111    01


Q ss_pred             EEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccCChh
Q 011351          275 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP  311 (488)
Q Consensus       275 i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~~~~  311 (488)
                      +... ..   .+...+..++.+|.||+|||..+....
T Consensus       123 ~~~~-~~---~~~~~~~~~~~~d~vviAtG~~~~~~~  155 (233)
T d1djqa3         123 LALG-QK---PMTADDVLQYGADKVIIATGASECTLW  155 (233)
T ss_dssp             EECS-CC---CCCHHHHHTSCCSEEEECCCEECCHHH
T ss_pred             eecc-cc---cccchhhhhhccceeeeccCCCccccc
Confidence            1111 11   122233345789999999999876543

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.63  E-value=1.5e-05  Score=70.30  Aligned_cols=36  Identities=22%  Similarity=0.285  Sum_probs=31.8

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      .||+||||||||++||.++++.+....+|+|||++.
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~   37 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   37 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCC
Confidence            589999999999999999999887455899999865

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.60  E-value=1.2e-05  Score=74.28  Aligned_cols=41  Identities=22%  Similarity=0.337  Sum_probs=33.5

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP   90 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~   90 (488)
                      ...+||+||||||||++||.+|+++.. ..+|+|+|+++...
T Consensus        48 ~~~~~~~~~g~g~~g~~~a~~~~~~~~-~~~~~~~~~~~~~~   88 (311)
T d2gjca1          48 FAVSDVIIVGAGSSGLSAAYVIAKNRP-DLKVCIIESSVAPG   88 (311)
T ss_dssp             TTEESEEEECCSHHHHHHHHHHHHHCT-TSCEEEECSSSSCC
T ss_pred             ccCCCEEEECCCHHHHHHHHHHHHhCC-CCeEEEEEcCCCCc
Confidence            345799999999999999999997621 33899999987653

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=97.58  E-value=2.1e-05  Score=73.73  Aligned_cols=37  Identities=30%  Similarity=0.433  Sum_probs=32.1

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHH-----cCCCCCcEEEEcCCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVE-----HGMADGRLCIVSKEAYA   89 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~-----~g~~~~~V~lie~~~~~   89 (488)
                      ..+||+|||||++|+++|..|++     .|+   +|+|+|+.+..
T Consensus         6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~---~v~vlEr~~~~   47 (360)
T d1pn0a1           6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDL---KVRIIDKRSTK   47 (360)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTC---CEEEECSSSSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhcccccCCC---cEEEEcCCCCC
Confidence            45899999999999999999964     566   89999998754

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=97.43  E-value=0.00016  Score=56.60  Aligned_cols=92  Identities=17%  Similarity=0.217  Sum_probs=63.7

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      +.++|+|||||-+++..|..|.+...   +|+|+-+.+.+...     + ..                     ..+..+.
T Consensus        26 ~~k~V~VvGgGdsA~e~A~~L~~~a~---~V~li~r~~~~~~~-----~-~~---------------------~~~~~~~   75 (126)
T d1trba2          26 RNQKVAVIGGGNTAVEEALYLSNIAS---EVHLIHRRDGFRAE-----K-IL---------------------IKRLMDK   75 (126)
T ss_dssp             TTSEEEEECSSHHHHHHHHHHTTTSS---EEEEECSSSSCCCC-----H-HH---------------------HHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhcCC---cEEEEeecccccch-----h-HH---------------------HHHHHHh
Confidence            46899999999999999999998754   89999876542100     0 00                     0111223


Q ss_pred             HHHCCCeEEeCCcEEEEeCCCc---EEEeCCC------cEEEeccEEeccC
Q 011351          130 YKEKGIEMIYQDPVTSIDIEKQ---TLITNSG------KLLKYGSLIVATG  171 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~---~v~~~~g------~~i~yd~lVlAtG  171 (488)
                      ....++.++.++.+.++..++.   .|++.+.      ++++.|.|+++.|
T Consensus        76 ~~~~~i~~~~~~~v~~i~G~~~~v~~v~l~~~~~~e~~~~l~~dgvFv~iG  126 (126)
T d1trba2          76 VENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIG  126 (126)
T ss_dssp             HHTSSEEEECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSC
T ss_pred             hcccceeEecceEEEEEECCCCceEEEEEEECCCCceEEEEECCEEEEEeC
Confidence            3456888888888999887654   3455432      3588999999887

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=97.43  E-value=3.1e-05  Score=71.24  Aligned_cols=36  Identities=19%  Similarity=0.334  Sum_probs=31.0

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      .+.+||||||+|+|||+||.++++.+    +|+||||.+.
T Consensus         5 ~~~~DVvVVG~G~AGl~AA~~a~~~g----~V~llEK~~~   40 (305)
T d1chua2           5 EHSCDVLIIGSGAAGLSLALRLADQH----QVIVLSKGPV   40 (305)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHTTTS----CEEEECSSCT
T ss_pred             cccCCEEEECccHHHHHHHHHhhcCC----CEEEEECCCC
Confidence            34689999999999999999987754    6999999864

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=97.41  E-value=0.001  Score=62.25  Aligned_cols=31  Identities=32%  Similarity=0.382  Sum_probs=29.2

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  239 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~  239 (488)
                      .++|||+|..|+-+|..|++.|.+|.+++++
T Consensus         6 DviIVGsG~aG~v~A~~La~~G~kVlvLEaG   36 (379)
T d2f5va1           6 DVVIVGSGPIGCTYARELVGAGYKVAMFDIG   36 (379)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             cEEEECcCHHHHHHHHHHhhCCCeEEEEecC
Confidence            4899999999999999999999999999975

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=97.39  E-value=0.00019  Score=56.09  Aligned_cols=88  Identities=16%  Similarity=0.245  Sum_probs=62.7

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      +.++|+|||||.+++-.|..|.+...   +|+||.+.+.+.-     .                          ....+.
T Consensus        29 ~gk~V~VvGgG~sA~~~A~~L~~~a~---~V~li~r~~~~~~-----~--------------------------~~~~~~   74 (126)
T d1fl2a2          29 KGKRVAVIGGGNSGVEAAIDLAGIVE---HVTLLEFAPEMKA-----D--------------------------QVLQDK   74 (126)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHTTBS---EEEEECSSSSCCS-----C--------------------------HHHHHH
T ss_pred             CCceEEEEeCCHHHHHHHHhhhccCC---ceEEEeccccccc-----c--------------------------cccccc
Confidence            46899999999999999999999754   8999987654200     0                          011222


Q ss_pred             HH-HCCCeEEeCCcEEEEeCCCc---EEEeC---CC--cEEEeccEEeccC
Q 011351          130 YK-EKGIEMIYQDPVTSIDIEKQ---TLITN---SG--KLLKYGSLIVATG  171 (488)
Q Consensus       130 ~~-~~~i~~~~~~~v~~id~~~~---~v~~~---~g--~~i~yd~lVlAtG  171 (488)
                      +. ..+|++++++++.++..++.   .+++.   +|  ++++.|.|+++.|
T Consensus        75 ~~~~~~I~v~~~~~v~~i~G~~~~v~~v~l~~~~tge~~~l~vdgvFv~IG  125 (126)
T d1fl2a2          75 LRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIG  125 (126)
T ss_dssp             HHTCTTEEEESSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSC
T ss_pred             cccccceeEEcCcceEEEEccccceeeEEEEECCCCCEEEEECCEEEEEeC
Confidence            33 35799999999999987643   24443   23  3589999999988

>d1v59a3 d.87.1.1 (A:356-478) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.39  E-value=7.1e-05  Score=58.38  Aligned_cols=65  Identities=14%  Similarity=0.089  Sum_probs=52.3

Q ss_pred             CcEEEEEEE--CCEEEEEEeecCChHHhhHHHH-HHhcCCCCC-h-hhhcCCCcHHHHHHHHHccCCccc
Q 011351          422 PKIATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVD-K-AKLQQASSVEEALEIARAALPVEA  486 (488)
Q Consensus       422 ~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~  486 (488)
                      ..+.|+.++  +++|+|+.+++.+++++..... +|+++.+++ . ..++.|||++|+++.|++++.+++
T Consensus        51 ~G~~Kli~d~~~~~ilGa~ivG~~A~elI~~~alai~~~~t~~~l~~~i~~hPT~sE~~~~Aa~~~~~~~  120 (123)
T d1v59a3          51 EGFVKILIDSKTERILGAHIIGPNAGEMIAEAGLALEYGASAEDVARVCHAHPTLSEAFKEANMAAYDKA  120 (123)
T ss_dssp             CCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCTTHHHHHHHHHHHSCC
T ss_pred             cEEEEEEEECCCCEEEEEEEEchHHHHHHHHHHHHHHcCCcHHHHHhcccCCCcHHHHHHHHHHHHcCCC
Confidence            457777764  5899999999999988876655 468888876 3 345889999999999999988765

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.36  E-value=6.7e-05  Score=70.35  Aligned_cols=39  Identities=23%  Similarity=0.268  Sum_probs=31.2

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCC-CCCcEEEEcCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGM-ADGRLCIVSKEAY   88 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~-~~~~V~lie~~~~   88 (488)
                      ...||||||+|+|||+||.+|++.+. +..+|+||||.+.
T Consensus        20 ~e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~   59 (356)
T d1jnra2          20 VETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAV   59 (356)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCT
T ss_pred             EecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCC
Confidence            35899999999999999999986321 1238999999754

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=97.23  E-value=0.00011  Score=69.44  Aligned_cols=37  Identities=19%  Similarity=0.289  Sum_probs=33.1

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      -.+.||||||+|++|+.+|.+|++.|.   +|+|+|+...
T Consensus         5 ~~~~dvIVVGsG~aG~v~A~rLaeaG~---~VlvLEaG~~   41 (370)
T d3coxa1           5 GDRVPALVIGSGYGGAVAALRLTQAGI---PTQIVEMGRS   41 (370)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSCC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCC---eEEEEeCCCC
Confidence            346899999999999999999999987   8999999753

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=97.23  E-value=0.00017  Score=67.88  Aligned_cols=34  Identities=21%  Similarity=0.290  Sum_probs=31.1

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      .+|||||+|++|+.+|.+|++.|+   +|+|+|+...
T Consensus         3 v~VIVVGsG~aG~v~A~rLaeaG~---~VlvLEaG~~   36 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEAGV---QTLMLEMGQL   36 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCC
T ss_pred             CeEEEeCcCHHHHHHHHHHHHCcC---eEEEEecCCC
Confidence            379999999999999999999987   8999999754

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.20  E-value=6.6e-05  Score=66.11  Aligned_cols=36  Identities=14%  Similarity=0.055  Sum_probs=28.1

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCC---CcEEEEcCCC
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMAD---GRLCIVSKEA   87 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~---~~V~lie~~~   87 (488)
                      .+|+|||||++|+++|++|+++|++-   .++++++++.
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~~~~~   39 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRF   39 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESCC
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCceEEeeeeecccCC
Confidence            37999999999999999999998721   2466666543

>d3lada3 d.87.1.1 (A:349-472) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.15  E-value=0.00021  Score=55.64  Aligned_cols=65  Identities=18%  Similarity=0.111  Sum_probs=52.1

Q ss_pred             CcEEEEEEE--CCEEEEEEeecCChHHhhHHHH-HHhcCCCCC-h-hhhcCCCcHHHHHHHHHccCCccc
Q 011351          422 PKIATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVD-K-AKLQQASSVEEALEIARAALPVEA  486 (488)
Q Consensus       422 ~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~  486 (488)
                      ..+.|+.++  +++|+|+++++.+++++...-. +++++.+++ . ...+.|||++|+++.|++++.+++
T Consensus        51 ~G~vKlv~d~~t~~ILGa~ivg~~A~elI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~~Aa~~~~~~~  120 (124)
T d3lada3          51 AGFVKVIADAKTDRVLGVHVIGPSAAELVQQGAIAMEFGTSAEDLGMMVFAHPALSEALHEAALAVSGHA  120 (124)
T ss_dssp             CCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHTSCCCSSCSHHHHHHHHHHHTTCC
T ss_pred             CeEEEEEEECCCCEEEEEEEEcccHHHHHHHHHHHHHcCCCHHHHHhCCccCCCHHHHHHHHHHHhcCCC
Confidence            457888774  5899999999999888776655 578888886 3 335889999999999999988764

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.15  E-value=0.0002  Score=65.70  Aligned_cols=36  Identities=25%  Similarity=0.300  Sum_probs=31.3

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCcC
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHL  242 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~--g~~v~lv~~~~~~  242 (488)
                      ...|+|||+|+.|+.+|..|+++  |.+|+++++.+.+
T Consensus        50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~   87 (311)
T d2gjca1          50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP   87 (311)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Confidence            45699999999999999999864  8999999988653

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.12  E-value=0.0011  Score=50.00  Aligned_cols=77  Identities=16%  Similarity=0.223  Sum_probs=53.1

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHh
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE  128 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (488)
                      -..++|+|||+|.+|+-.|..|++...   +++++.+.+...          ..                          
T Consensus        30 f~gK~VlVVG~g~Sa~dia~~l~~~ak---~v~~~~~r~~~~----------~~--------------------------   70 (107)
T d2gv8a2          30 FVGESVLVVGGASSANDLVRHLTPVAK---HPIYQSLLGGGD----------IQ--------------------------   70 (107)
T ss_dssp             GTTCCEEEECSSHHHHHHHHHHTTTSC---SSEEEECTTCCS----------CB--------------------------
T ss_pred             cCCCeEEEECCCCCHHHHHHHHHHhcC---EEEEEEecCccc----------cc--------------------------
Confidence            356899999999999999999988754   555555432210          00                          


Q ss_pred             HHHHCCCeEEeCCcEEEEeCCCcEEEeCCCcEEE-eccEEec
Q 011351          129 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLK-YGSLIVA  169 (488)
Q Consensus       129 ~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~i~-yd~lVlA  169 (488)
                         ..++...  ..+..+++..+.+++.||+.+. .|++|+|
T Consensus        71 ---~~~~~~~--~~i~~~~~~~~~v~~~dG~~~~~vD~Ii~C  107 (107)
T d2gv8a2          71 ---NESLQQV--PEITKFDPTTREIYLKGGKVLSNIDRVIYC  107 (107)
T ss_dssp             ---CSSEEEE--CCEEEEETTTTEEEETTTEEECCCSEEEEC
T ss_pred             ---cccceec--CCeeEEecCCCEEEEcCCCEEeCCCEEEEC
Confidence               0112222  2466778888899999999876 6999876

>d1xdia2 d.87.1.1 (A:349-466) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.11  E-value=0.0002  Score=55.25  Aligned_cols=62  Identities=16%  Similarity=0.155  Sum_probs=48.9

Q ss_pred             CcEEEEEEE--CCEEEEEEeecCChHHhhHHHH-HHhcCCCCCh--hhhcCCCcHHHHHHHHHccCC
Q 011351          422 PKIATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVDK--AKLQQASSVEEALEIARAALP  483 (488)
Q Consensus       422 ~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  483 (488)
                      ..+.|+.++  +++|+|+.+++.++.++...-. +++++.+++.  ..++.|||++|+++.|++.++
T Consensus        51 ~G~vKlv~d~~~~~ilGa~ivG~~A~elI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~~aa~~l~  117 (118)
T d1xdia2          51 HGFVKIFCRRSTGVVIGGVVVAPIASELILPIAVAVQNRITVNELAQTLAVYPSLSGSITEAARRLM  117 (118)
T ss_dssp             SCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHTSBCCSSSTHHHHHHHHHHHC
T ss_pred             hhheEEEEecCCCceEEEEEEcCcHHHHHHHHHHHHHcCCCHHHHhhCCCCCCCHHHHHHHHHHHHh
Confidence            457777764  4899999998888888776655 5788888863  335889999999999998865

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=97.11  E-value=0.00017  Score=67.68  Aligned_cols=35  Identities=23%  Similarity=0.426  Sum_probs=32.2

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      .+|+||||+|+||..+|.+|++.|.   +|+|+|+...
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae~g~---~VlvLEaG~~   36 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSEAGK---KVLLLERGGP   36 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSCC
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCC---eEEEEEccCC
Confidence            5899999999999999999999886   8999999853

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.02  E-value=0.015  Score=53.64  Aligned_cols=31  Identities=26%  Similarity=0.449  Sum_probs=26.6

Q ss_pred             eEEEECCCHHHHHHHHHHHh----CCCcEEEEecC
Q 011351          209 KVVVVGGGYIGMEVAAAAVG----WKLDTTIIFPE  239 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~----~g~~v~lv~~~  239 (488)
                      .|+|||+|+.|+-.|..+++    .|.+|.++++.
T Consensus        23 DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~   57 (356)
T d1jnra2          23 DILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKA   57 (356)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCC
Confidence            59999999999888887764    68999999865

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.00  E-value=0.00076  Score=52.77  Aligned_cols=87  Identities=21%  Similarity=0.307  Sum_probs=60.6

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCCCCCCHhH
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW  129 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (488)
                      +.++|+|||||-+++-.|..|++...   +|+||-+.+.+.-+     .                         ....+.
T Consensus        33 rgk~V~VvGgGdsA~e~A~~L~~~a~---~V~li~r~~~~ra~-----~-------------------------~~~~~l   79 (130)
T d1vdca2          33 RNKPLAVIGGGDSAMEEANFLTKYGS---KVYIIHRRDAFRAS-----K-------------------------IMQQRA   79 (130)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTTSS---EEEEECSSSSCCSC-----H-------------------------HHHHHH
T ss_pred             CCCEEEEEcCchHHHHHHHHHhCCCC---cEEEEEeccccccc-----h-------------------------hhhhcc
Confidence            46899999999999999999998754   89999877552100     0                         011223


Q ss_pred             HHHCCCeEEeCCcEEEEeCCCc-----EEEeC---CC--cEEEeccEEec
Q 011351          130 YKEKGIEMIYQDPVTSIDIEKQ-----TLITN---SG--KLLKYGSLIVA  169 (488)
Q Consensus       130 ~~~~~i~~~~~~~v~~id~~~~-----~v~~~---~g--~~i~yd~lVlA  169 (488)
                      .+..+|++++++++..+.-+.+     .+.+.   ++  ++++.|.|+||
T Consensus        80 ~~~~nI~v~~~~~v~~i~Gd~~~~~v~~v~l~~~~tge~~~l~~dGvFVa  129 (130)
T d1vdca2          80 LSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFA  129 (130)
T ss_dssp             HTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEEC
T ss_pred             ccCCceEEEeccEEEEEEccCCcccEEEEEEEECCCCCEEEEECCEEEEE
Confidence            3445799999999988876542     23332   23  46889998887

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=97.00  E-value=0.00033  Score=66.50  Aligned_cols=39  Identities=21%  Similarity=0.406  Sum_probs=33.6

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   89 (488)
                      .+.+|+||||||.||..+|.+|.+.+  +.+|+|||+++..
T Consensus        22 ~~tyD~IIVGsG~aG~vlA~rLae~~--~~~VLlLEaG~~~   60 (391)
T d1gpea1          22 GKTYDYIIAGGGLTGLTVAAKLTENP--KIKVLVIEKGFYE   60 (391)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHTST--TCCEEEEESSCCC
T ss_pred             CCeeeEEEECcCHHHHHHHHHHHHCC--CCeEEEEcCCCCC
Confidence            34699999999999999999999976  3489999999653

>d1dxla3 d.87.1.1 (A:348-470) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.94  E-value=0.00037  Score=54.11  Aligned_cols=65  Identities=14%  Similarity=0.106  Sum_probs=51.3

Q ss_pred             CcEEEEEEE--CCEEEEEEeecCChHHhhHHHH-HHhcCCCCC-hh-hhcCCCcHHHHHHHHHccCCccc
Q 011351          422 PKIATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVD-KA-KLQQASSVEEALEIARAALPVEA  486 (488)
Q Consensus       422 ~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~  486 (488)
                      ..+.|+.++  +|+|+|+++++.+++++..... +++++.+++ .. .+..|||++|+++.|++++.+++
T Consensus        51 ~G~~Klv~d~~~~~ilG~~ivG~~A~elI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~~~~aa~~~~~~~  120 (123)
T d1dxla3          51 EGLVKIIAEKETDKILGVHIMAPNAGELIHEAAIALQYDASSEDIARVCHAHPTMSEAIKEAAMATYDKP  120 (123)
T ss_dssp             CCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCTTHHHHHHHHHHHSCC
T ss_pred             cceEEEEEECCCCEEEEEEEehhhHHHHHHHHHHHHHcCCcHHHHhhCCCCCCCHHHHHHHHHHHHcCCC
Confidence            457777764  4899999998888888776655 568888886 33 34889999999999999877654

>d1lvla3 d.87.1.1 (A:336-458) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.92  E-value=0.00036  Score=54.16  Aligned_cols=65  Identities=9%  Similarity=-0.006  Sum_probs=50.6

Q ss_pred             CcEEEEEEE--CCEEEEEEeecCChHHhhHHHH-HHhcCCCCC-h-hhhcCCCcHHHHHHHHHccCCccc
Q 011351          422 PKIATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVD-K-AKLQQASSVEEALEIARAALPVEA  486 (488)
Q Consensus       422 ~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~  486 (488)
                      ..+.++.++  +++|+|+.+++.+++++..... +++.+.+++ . ...+.|||++|++++|++++.+++
T Consensus        51 ~g~vklv~d~~t~~ILG~~ivG~~A~elI~~~~lai~~~~t~~~l~~~i~~hPT~sE~~~~aa~~~~~~~  120 (123)
T d1lvla3          51 SGFVRVVARRDNHLILGWQAVGVAVSELSTAFAQSLEMGACLEDVAGTIHAHPTLGEAVQEAALRALGHA  120 (123)
T ss_dssp             CCEEEEEEETTTCBEEEEEEEETTGGGHHHHHHHHHHHTCBHHHHHTSCCCTTCTTHHHHHHHHHHTTCC
T ss_pred             hhheeeeeecccccceEEEEEeCchhhHHHHHHHHHHcCCCHHHHhcCCCCCCCHHHHHHHHHHHHcCCC
Confidence            346676664  4899999998888888776655 468888876 3 345889999999999999887754

>d1ebda3 d.87.1.1 (A:347-461) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.85  E-value=0.0007  Score=51.77  Aligned_cols=62  Identities=6%  Similarity=0.012  Sum_probs=48.1

Q ss_pred             CcEEEEEEE--CCEEEEEEeecCChHHhhHHHH-HHhcCCCCC-h-hhhcCCCcHHHHHHHHHccCC
Q 011351          422 PKIATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVD-K-AKLQQASSVEEALEIARAALP  483 (488)
Q Consensus       422 ~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~  483 (488)
                      ..+.|+.++  +++|+|+.+++.+++++...-. +++++.+++ . ..++.|||++|+++.|++.++
T Consensus        49 ~G~vKli~~~~~~~iLG~~ivg~~A~elI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~~~~Aa~~al  115 (115)
T d1ebda3          49 DGFLKLVVRKEDGVIIGAQIIGPNASDMIAELGLAIEAGMTAEDIALTIHAHPTLGEIAMEAAEVAL  115 (115)
T ss_dssp             CCEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHHTCBHHHHHHSCCCTTSSTHHHHHHHHHTC
T ss_pred             cEEEEEEEeCCcceEEEEEEEcCCHHHHHHHHHHHHHcCCCHHHHhhCCCCCCCHHHHHHHHHHHhC
Confidence            457777664  5899999998888888776655 568888776 2 345889999999999987653

>d1ojta3 d.87.1.1 (A:471-598) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=96.84  E-value=0.0004  Score=54.32  Aligned_cols=64  Identities=8%  Similarity=0.024  Sum_probs=50.3

Q ss_pred             CcEEEEEEE--CCEEEEEEeecCChHHhhHHHH-HHhcCCCCC-h-hhhcCCCcHHHHHHHHHccCCcc
Q 011351          422 PKIATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVD-K-AKLQQASSVEEALEIARAALPVE  485 (488)
Q Consensus       422 ~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~  485 (488)
                      ..+.++.++  +|+|+|+++++.+++++..... +++++.+++ . ...+.|||++|++.+|++.+.++
T Consensus        51 ~g~~Kli~d~~~g~iLGa~ivG~~A~ElI~~~~lai~~~~t~~~l~~~i~~hPT~sE~l~~Aa~~~~~~  119 (128)
T d1ojta3          51 KPFTKLIFDAETGRIIGGGIVGPNGGDMIGEVCLAIEMGCDAADIGKTIHPHPTLGESIGMAAEVALGT  119 (128)
T ss_dssp             SCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSSSTTHHHHHHHHHHTC
T ss_pred             cceEEEEEeCCCCeEEEEEEEhhhHHHHHHHHHHHHHcCCCHHHHhhCcCcCCCHHHHHHHHHHHHcCC
Confidence            457777664  5899999998888888776655 468888886 2 44588999999999999887654

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.79  E-value=0.00073  Score=49.53  Aligned_cols=36  Identities=17%  Similarity=0.289  Sum_probs=31.9

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      +.++|+|+|.|.+|+++|..|.++|.   +|++.|....
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~~g~---~v~~~D~~~~   39 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLARGV---TPRVMDTRMT   39 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTC---CCEEEESSSS
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCC---EEEEeeCCcC
Confidence            45789999999999999999999987   8999997644

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=96.76  E-value=0.00039  Score=65.80  Aligned_cols=38  Identities=18%  Similarity=0.402  Sum_probs=32.8

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      .+.+|+||||||.||+.+|.+|.+.+  +.+|+|||+++.
T Consensus        15 ~~tyD~IIVGsG~aG~vlA~rLse~~--~~~VLvLEaG~~   52 (385)
T d1cf3a1          15 GRTVDYIIAGGGLTGLTTAARLTENP--NISVLVIESGSY   52 (385)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHTTST--TCCEEEEESSCC
T ss_pred             CCeEEEEEECcCHHHHHHHHHHHHCC--CCeEEEECCCCC
Confidence            34589999999999999999999875  348999999864

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=96.76  E-value=0.0073  Score=53.78  Aligned_cols=101  Identities=21%  Similarity=0.213  Sum_probs=68.7

Q ss_pred             CCeEEEECCCHHHHHHHHHHHh-CCCcEEEEecCCcCcccc-----------cC--------------------------
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVG-WKLDTTIIFPENHLLQRL-----------FT--------------------------  248 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~-~g~~v~lv~~~~~~l~~~-----------~~--------------------------  248 (488)
                      ...|+|||+|+.|+.+|..|++ .|.+|+++++.+.+-...           +.                          
T Consensus        33 e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  112 (278)
T d1rp0a1          33 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHA  112 (278)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCH
T ss_pred             CCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceeecCEEcCHHHHhhhHHHHHHHcCCceecCCccceeccc
Confidence            4569999999999999999987 599999999886432100           00                          


Q ss_pred             -HHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEEe--------------CCCcEEEcCEEEEeecCccC
Q 011351          249 -PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL--------------EDGSTIDADTIVIGIGAKPT  308 (488)
Q Consensus       249 -~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~l--------------~~g~~i~~D~vi~a~G~~p~  308 (488)
                       ..+...+.+.++..++.+..++.+..+... ++++.++..              .++.++.++.+|.++|....
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~gv~~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~~~  186 (278)
T d1rp0a1         113 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGP  186 (278)
T ss_dssp             HHHHHHHHHHHHTSTTEEEEETEEEEEEEEE-TTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSST
T ss_pred             HHHHHHHHHHHHHhCCCEEEeCCcceeeeec-CCeEEEEEeccceeeeeecccccccceeeccceEEECcCCCcc
Confidence             012233344555678888888888777653 444444432              12357899999999997643

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.72  E-value=0.00061  Score=59.43  Aligned_cols=91  Identities=12%  Similarity=0.159  Sum_probs=65.0

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhCC-------CcEEEEecCCcCccc---------ccCHHHHHHHHHHHHHcCcEEEcCC
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGWK-------LDTTIIFPENHLLQR---------LFTPSLAQRYEQLYQQNGVKFVKGA  270 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g-------~~v~lv~~~~~~l~~---------~~~~~~~~~~~~~l~~~GV~v~~~~  270 (488)
                      +.+|+|||+|++|+.+|..|.+.|       .+|+++++.+.+-..         .....+.+.....+.+.|++++++.
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~gi~p~~~~~~~~~~~~~~~~~~~g~~~~~~~   81 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNV   81 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESC
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeeeccCcccccchhhhhhhhhhhccCCceEEEEE
Confidence            468999999999999999999887       479999998754321         1223455666677888999999997


Q ss_pred             eEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeecCccC
Q 011351          271 SIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  308 (488)
Q Consensus       271 ~v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a~G~~p~  308 (488)
                      .+....          .+++ -...+|.|++++|..+.
T Consensus        82 ~v~~~~----------~~~~-~~~~~~~v~~atGa~~~  108 (239)
T d1lqta2          82 VVGEHV----------QPGE-LSERYDAVIYAVGAQSR  108 (239)
T ss_dssp             CBTTTB----------CHHH-HHHHSSEEEECCCCCEE
T ss_pred             Eecccc----------chhh-hhccccceeeecCCCcc
Confidence            642110          0111 12468999999998754

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=96.65  E-value=0.00033  Score=65.46  Aligned_cols=35  Identities=26%  Similarity=0.505  Sum_probs=30.9

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      ..+|+||||||+||+.+|.+|++. +   +|+|||+++.
T Consensus        25 ~~YD~IIVGsG~aG~vlA~rLae~-~---kVLvLEaG~~   59 (351)
T d1ju2a1          25 GSYDYVIVGGGTSGCPLAATLSEK-Y---KVLVLERGSL   59 (351)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTTT-S---CEEEECSSBC
T ss_pred             CCccEEEECccHHHHHHHHHhcCC-C---CEEEEecCCC
Confidence            358999999999999999999875 4   7999999864

>d1m6ia3 d.87.1.1 (A:478-608) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.58  E-value=0.0019  Score=48.63  Aligned_cols=39  Identities=8%  Similarity=0.157  Sum_probs=32.6

Q ss_pred             CcEEEEEEECCEEEEEEeecCChHHhhHHHHHHhcCCCCC
Q 011351          422 PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVD  461 (488)
Q Consensus       422 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  461 (488)
                      .|-++||+++++|||++| .+--.++...|++|+.+...+
T Consensus        84 gKGVIFYLrd~~VVGVLL-WNvFnrm~iAR~iI~~~~~~~  122 (131)
T d1m6ia3          84 GKGVIFYLRDKVVVGIVL-WNIFNRMPIARKIIKDGEQHE  122 (131)
T ss_dssp             CEEEEEEEETTEEEEEEE-ESCCSCHHHHHHHHHHCCBCS
T ss_pred             CceEEEEecCCcEEEEEE-ecccCccHHHHHHHHcCCccc
Confidence            467899999999999997 566678999999998776654

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.52  E-value=0.00057  Score=50.13  Aligned_cols=80  Identities=18%  Similarity=0.195  Sum_probs=55.2

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEE
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  285 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~  285 (488)
                      ++|+++|+|.|.+|..+|..|.+.|.+|++.+.+......           +.+ +.++.++++..              
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~-----------~~~-~~~~~~~~~~~--------------   57 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGL-----------DKL-PEAVERHTGSL--------------   57 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTG-----------GGS-CTTSCEEESBC--------------
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhH-----------HHH-hhccceeeccc--------------
Confidence            5789999999999999999999999999999876532211           111 12344433310              


Q ss_pred             EEeCCCcEEEcCEEEEeecCccCChhhhh
Q 011351          286 VKLEDGSTIDADTIVIGIGAKPTVSPFER  314 (488)
Q Consensus       286 v~l~~g~~i~~D~vi~a~G~~p~~~~~~~  314 (488)
                         .....-.+|.||+++|..++.++++.
T Consensus        58 ---~~~~~~~~d~vi~SPGi~~~~~~~~~   83 (93)
T d2jfga1          58 ---NDEWLMAADLIVASPGIALAHPSLSA   83 (93)
T ss_dssp             ---CHHHHHHCSEEEECTTSCTTSHHHHH
T ss_pred             ---chhhhccCCEEEECCCCCCCCHHHHH
Confidence               00012367999999999998877554

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.33  E-value=0.0019  Score=58.94  Aligned_cols=39  Identities=23%  Similarity=0.382  Sum_probs=36.0

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR  245 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~  245 (488)
                      .|+|+|||+|++|+-+|..|++.|.+|+|+++++++-..
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG~   40 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGN   40 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGG
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcCe
Confidence            589999999999999999999999999999999887653

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.24  E-value=0.0015  Score=53.99  Aligned_cols=34  Identities=9%  Similarity=0.375  Sum_probs=31.5

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      .++|+|||+|..|..+|.+|.+.|+   +|+|++++.
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~---~V~v~dr~~   35 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGI---KVTVACRTL   35 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTC---EEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC---EEEEEECCh
Confidence            5799999999999999999999987   899999875

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.17  E-value=0.0025  Score=58.60  Aligned_cols=63  Identities=21%  Similarity=0.331  Sum_probs=46.7

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccc----------------cCHHHHHHHHHHHHHcCcEEEc
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL----------------FTPSLAQRYEQLYQQNGVKFVK  268 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~----------------~~~~~~~~~~~~l~~~GV~v~~  268 (488)
                      +..+|+|||+|..|+-+|..|++.|.+|+|+++++++-.+.                +...-...+.+.+++.|+++..
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GGr~~t~~~~g~~~d~G~~~i~~~~~~~~~~l~~~lgl~~~~   82 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGGNPMAVVSKQVNMELAK   82 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCCEEEETTEEEESSCCEECCSBTCHHHHHHHHHTCCEEE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcccEEEEEeCCEEEECCCEEECCCCCcHHHHHHHHcCCccee
Confidence            45789999999999999999999999999999988764421                1101122455667788887653

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=0.00088  Score=57.56  Aligned_cols=35  Identities=17%  Similarity=0.282  Sum_probs=29.2

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCC--cEEEEecCCcC
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHL  242 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~--~v~lv~~~~~~  242 (488)
                      .+++|||+|+.|+++|..|++.+.  +|+++.+.+.+
T Consensus         5 ~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~   41 (213)
T d1m6ia1           5 VPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPEL   41 (213)
T ss_dssp             EEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSC
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCC
Confidence            468999999999999999988765  58888876543

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=96.02  E-value=0.0043  Score=49.91  Aligned_cols=39  Identities=10%  Similarity=0.232  Sum_probs=33.2

Q ss_pred             cCCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           47 FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        47 ~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      ++.+++||.|||+|..|.++|..|...++.  +++|+|.++
T Consensus         3 ~~~k~~KI~IIGaG~VG~~lA~~l~~~~~~--el~L~D~~~   41 (154)
T d1pzga1           3 LVQRRKKVAMIGSGMIGGTMGYLCALRELA--DVVLYDVVK   41 (154)
T ss_dssp             CCSCCCEEEEECCSHHHHHHHHHHHHHTCC--EEEEECSSS
T ss_pred             cccCCCcEEEECCCHHHHHHHHHHHhCCCc--eEEEEEecc
Confidence            456789999999999999999999988863  899998654

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=95.99  E-value=0.0039  Score=49.62  Aligned_cols=39  Identities=21%  Similarity=0.356  Sum_probs=33.4

Q ss_pred             CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      +++++||.|||+|.-|.++|+.|...+. -.++.|+|.++
T Consensus         2 m~~~~KI~IIGaG~VG~~~A~~l~~~~~-~~elvL~D~~~   40 (146)
T d1ez4a1           2 MPNHQKVVLVGDGAVGSSYAFAMAQQGI-AEEFVIVDVVK   40 (146)
T ss_dssp             BTTBCEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSSH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhcCC-CcEEEEeeccc
Confidence            3456799999999999999999999986 45899999654

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=95.93  E-value=0.0032  Score=56.58  Aligned_cols=35  Identities=31%  Similarity=0.408  Sum_probs=32.4

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL  243 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l  243 (488)
                      +|+|||+|+.|+.+|..|++.|.+|+++++++++-
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~G   36 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLG   36 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSB
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCC
Confidence            58999999999999999999999999999987653

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=95.90  E-value=0.0036  Score=54.90  Aligned_cols=34  Identities=29%  Similarity=0.424  Sum_probs=31.8

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  239 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~  239 (488)
                      ..++|+|||+|..|+-+|..|+++|.+|+|+++.
T Consensus         5 ~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~   38 (268)
T d1c0pa1           5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARD   38 (268)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCC
Confidence            4578999999999999999999999999999985

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.83  E-value=0.0049  Score=46.71  Aligned_cols=37  Identities=35%  Similarity=0.548  Sum_probs=32.2

Q ss_pred             CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      .-+.++|+|||||..|..-|..|.+.|.   +|++++++.
T Consensus         9 ~l~~k~vlVvG~G~va~~ka~~ll~~ga---~v~v~~~~~   45 (113)
T d1pjqa1           9 QLRDRDCLIVGGGDVAERKARLLLEAGA---RLTVNALTF   45 (113)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTB---EEEEEESSC
T ss_pred             EeCCCEEEEECCCHHHHHHHHHHHHCCC---eEEEEeccC
Confidence            3457899999999999999999999876   899998654

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=95.82  E-value=0.0062  Score=46.52  Aligned_cols=39  Identities=21%  Similarity=0.409  Sum_probs=34.4

Q ss_pred             CCCCCeEEEEcCch-----------HHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351           48 ANENREFVIVGGGN-----------AAGYAARTFVEHGMADGRLCIVSKEAYA   89 (488)
Q Consensus        48 ~~~~~~vvIIGgG~-----------AGl~aA~~L~~~g~~~~~V~lie~~~~~   89 (488)
                      ..+.++|+|||+|+           ++..|+.+|++.|+   ++++|..++..
T Consensus         4 ~~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~---~~iliN~NP~T   53 (127)
T d1a9xa3           4 RTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGY---RVINVNSNPAT   53 (127)
T ss_dssp             CSSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTC---EEEEECSCTTC
T ss_pred             CCCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCC---eEEEecCchHh
Confidence            45678999999996           79999999999998   89999998764

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=95.82  E-value=0.005  Score=49.66  Aligned_cols=35  Identities=29%  Similarity=0.380  Sum_probs=31.5

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      ...+|+|||+|.+|+.|+..+++.|-   +|+++|.+.
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA---~V~~~D~~~   65 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGA---QVQIFDINV   65 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCC---EEEEEeCcH
Confidence            35799999999999999999999986   899999764

>d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=95.81  E-value=0.012  Score=46.40  Aligned_cols=104  Identities=16%  Similarity=0.155  Sum_probs=62.1

Q ss_pred             HHHHHHHHhh---hcCCeEEEE-CCC-----HHHHHHH----HHHHhCCC--cEEEEecCCcCcc-cccCHHHHHHHHHH
Q 011351          195 ADADALISSL---EKAKKVVVV-GGG-----YIGMEVA----AAAVGWKL--DTTIIFPENHLLQ-RLFTPSLAQRYEQL  258 (488)
Q Consensus       195 ~~~~~~~~~~---~~~~~vvVv-G~G-----~~g~e~A----~~l~~~g~--~v~lv~~~~~~l~-~~~~~~~~~~~~~~  258 (488)
                      .+...+++.+   ..+.++++. .++     ....|++    ..|+++|.  ++.++...+.... ..+.+.+.+.+.+.
T Consensus        18 ~~~~~L~~~l~~~~~Gg~vv~t~p~~P~kCpgAP~e~a~l~~~~lr~~g~r~kv~i~~~~~~~~~~~~~~~~~~~~~~~~   97 (141)
T d1fcda2          18 EQTAILRKQLEDMADGGTVVIAPPAAPFRCPPGPYERASQVAYYLKAHKPMSKVIILDSSQTFSKQSQFSKGWERLYGFG   97 (141)
T ss_dssp             HHHHHHHHHHHHSCTTCCEEEECCCSSCSSTTHHHHHHHHHHHHHGGGCSCCCEEEECSCSSCTTHHHHHHHHHHHHCST
T ss_pred             HHHHHHHHHHHhcccCCeEEEecCCCCccCCchHHHHHHHHHHHHHHcCCCCcEEEEecCCCCccCCcccHHHHHHHHHH
Confidence            3345555544   345566554 222     2334444    44556654  5666655543211 11234456677777


Q ss_pred             HHHcCcEEEcCCe--EEEEEeCCCCcEEEEEeCCCcEEEcCEEEEe
Q 011351          259 YQQNGVKFVKGAS--IKNLEAGSDGRVAAVKLEDGSTIDADTIVIG  302 (488)
Q Consensus       259 l~~~GV~v~~~~~--v~~i~~~~~~~v~~v~l~~g~~i~~D~vi~a  302 (488)
                      ++++||+++.+..  +.+++..  .+  .+.+.+|+++++|++++.
T Consensus        98 ~~~~~I~~~~~~~~~~v~vd~~--~~--~~~~~~Ge~v~yD~l~vv  139 (141)
T d1fcda2          98 TENAMIEWHPGPDSAVVKVDGG--EM--MVETAFGDEFKADVINLI  139 (141)
T ss_dssp             TSSCSEEEECSSTTCEEEEEET--TT--EEEETTCCEEECSEEEEC
T ss_pred             HHhcCceeeecCCceEEeecCC--cE--EEEeCCCcEEeeeEEEeC
Confidence            7889999998764  6666532  22  467899999999999875

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=95.81  E-value=0.0036  Score=51.93  Aligned_cols=34  Identities=18%  Similarity=0.265  Sum_probs=30.9

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      +++|.|||+|..|+..|..|.++|+   +|+++++++
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~---~V~~~~r~~   34 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQ---SVLAWDIDA   34 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSCH
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            3789999999999999999999987   899999764

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=95.72  E-value=0.0061  Score=49.86  Aligned_cols=35  Identities=20%  Similarity=0.096  Sum_probs=31.5

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      .-+|+|||+|.+|+.|+....+.|.   +|+++|.+..
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~lGA---~V~v~D~~~~   63 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRLGA---VVMATDVRAA   63 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSCST
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHcCC---EEEEEeccHH
Confidence            5699999999999999999999986   8999997653

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.68  E-value=0.021  Score=42.92  Aligned_cols=34  Identities=18%  Similarity=0.219  Sum_probs=31.4

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  239 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~  239 (488)
                      .+++++|||+|.+|..-+..|.+.|.+|+++...
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~   44 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            5899999999999999999999999999998654

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=95.61  E-value=0.015  Score=43.68  Aligned_cols=38  Identities=18%  Similarity=0.356  Sum_probs=33.3

Q ss_pred             CCCCeEEEEcCch-----------HHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351           49 NENREFVIVGGGN-----------AAGYAARTFVEHGMADGRLCIVSKEAYA   89 (488)
Q Consensus        49 ~~~~~vvIIGgG~-----------AGl~aA~~L~~~g~~~~~V~lie~~~~~   89 (488)
                      .+.++|+|||+|+           ++..|+.+|++.|+   ++++|..++..
T Consensus         2 t~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~---~~IliN~NPeT   50 (121)
T d1a9xa4           2 TDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGY---ETIMVNCNPET   50 (121)
T ss_dssp             SSSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTC---EEEEECCCTTS
T ss_pred             CCCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCC---eEEEEecChhh
Confidence            3468999999995           79999999999998   89999998764

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=95.61  E-value=0.011  Score=48.90  Aligned_cols=33  Identities=21%  Similarity=-0.011  Sum_probs=30.6

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  240 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~  240 (488)
                      |++.|+|+|..|.-+|..|.+.|.+|+++.|.+
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~   34 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   34 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            789999999999999999999999999997753

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.57  E-value=0.0032  Score=50.54  Aligned_cols=37  Identities=19%  Similarity=0.429  Sum_probs=32.6

Q ss_pred             CCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      ..+.++|+|||||..|+.-|..|.+.|.   +|+||.++.
T Consensus        10 ~l~gkrvLViGgG~va~~ka~~Ll~~GA---~VtVvap~~   46 (150)
T d1kyqa1          10 QLKDKRILLIGGGEVGLTRLYKLMPTGC---KLTLVSPDL   46 (150)
T ss_dssp             CCTTCEEEEEEESHHHHHHHHHHGGGTC---EEEEEEEEE
T ss_pred             eeCCCEEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCC
Confidence            3567999999999999999999999986   899998653

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.56  E-value=0.005  Score=48.07  Aligned_cols=33  Identities=18%  Similarity=0.330  Sum_probs=30.2

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      .+|+|+|+|.-|...|..|.+.|+   +|++||+++
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~---~v~vid~d~   33 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGH---DIVLIDIDK   33 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC---CcceecCCh
Confidence            379999999999999999999987   899999874

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=95.41  E-value=0.0051  Score=48.15  Aligned_cols=33  Identities=18%  Similarity=0.391  Sum_probs=30.4

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      ++++|||.|..|...|..|.+.|+   +|++||+++
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~---~vvvid~d~   33 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGH---EVLAVDINE   33 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC---CCEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC---eEEEecCcH
Confidence            579999999999999999999988   799999875

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=95.30  E-value=0.029  Score=51.85  Aligned_cols=31  Identities=16%  Similarity=0.137  Sum_probs=28.8

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  239 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~  239 (488)
                      .++|||+|..|+-+|..|++.|.+|.+++++
T Consensus         4 D~IIVGsG~aG~v~A~rLae~g~~VlvLEaG   34 (360)
T d1kdga1           4 DYIIVGAGPGGIIAADRLSEAGKKVLLLERG   34 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHhhCCCeEEEEEcc
Confidence            4799999999999999999999999999876

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.28  E-value=0.007  Score=54.61  Aligned_cols=37  Identities=22%  Similarity=0.302  Sum_probs=34.0

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCccc
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR  245 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~  245 (488)
                      .++|||+|++|+-+|..|++.|.+|+++++++++-..
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~   39 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGN   39 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGG
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcccc
Confidence            5899999999999999999999999999999887664

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=95.25  E-value=0.024  Score=48.52  Aligned_cols=36  Identities=8%  Similarity=0.227  Sum_probs=29.3

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      -+.++|+|||+|-+|+-+|..|.+.+.   +++++-+..
T Consensus        30 ~~gK~V~VvG~G~Sa~dia~~~~~~~~---~~~~~~~~~   65 (235)
T d1w4xa2          30 FSGQRVGVIGTGSSGIQVSPQIAKQAA---ELFVFQRTP   65 (235)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHHBS---EEEEEESSC
T ss_pred             CCCCEEEEECCCccHHHHHHHHHhhhc---ccccccccc
Confidence            356899999999999999999999875   566655444

>d1onfa3 d.87.1.1 (A:377-495) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.09  E-value=0.012  Score=44.96  Aligned_cols=55  Identities=7%  Similarity=-0.005  Sum_probs=42.1

Q ss_pred             cEEEEEE--ECCEEEEEEeecCChHHhhHHHH-HHhcCCCCC-h-hhhcCCCcHHHHHHH
Q 011351          423 KIATFWI--DSGKLKGVLVESGSPEEFQLLPT-LARSQPFVD-K-AKLQQASSVEEALEI  477 (488)
Q Consensus       423 ~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~~~~~  477 (488)
                      .+.++.+  ++++|+|+.+++++++++.+.-. +++++.+++ . ...+.|||++|++..
T Consensus        58 g~~kli~~~~~~~IlGa~ivG~~A~ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~~~~  117 (119)
T d1onfa3          58 TYLKLVCVGKDELIKGLHIIGLNADEIVQGFAVALKMNATKKDFDETIPIHPTAAEEFLT  117 (119)
T ss_dssp             EEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCSTTHHHH
T ss_pred             ceEEEEEecCCCcEEEEEEeCCCHHHHHHHHHHHHHcCCcHHHHhhCcccCCCHHHHHHh
Confidence            4556555  35999999999999988876655 568888776 2 345889999999875

>d3grsa3 d.87.1.1 (A:364-478) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.01  E-value=0.0079  Score=45.62  Aligned_cols=56  Identities=9%  Similarity=0.012  Sum_probs=43.0

Q ss_pred             CcEEEEEEE--CCEEEEEEeecCChHHhhHHHH-HHhcCCCCCh--hhhcCCCcHHHHHHH
Q 011351          422 PKIATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVDK--AKLQQASSVEEALEI  477 (488)
Q Consensus       422 ~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~  477 (488)
                      ..+.++.++  +++|+|+.++++.++++..... +++++.+++.  ...+.|||++|++..
T Consensus        53 ~g~~k~i~~~~~~~ilG~~ivG~~A~ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~~  113 (115)
T d3grsa3          53 KCVMKMVCANKEEKVVGIHMQGLGCDEMLQGFAVAVKMGATKADFDNTVAIHPTSSEELVT  113 (115)
T ss_dssp             CEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGGS
T ss_pred             ceeEEEEEecCCceEEEEEEeccCHHHHHHHHHHHHHcCCCHHHHhhCccCCCCHHHHHHh
Confidence            356777664  6999999998999988876655 4688887762  345899999998863

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.98  E-value=0.013  Score=46.60  Aligned_cols=38  Identities=13%  Similarity=0.376  Sum_probs=32.7

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      +..+||.|||+|..|.++|+.|...+. -.++.|+|..+
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l-~~el~L~Di~~   41 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGI-ADEIVLIDANE   41 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSSH
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCC-CceEEEEeecc
Confidence            456799999999999999999999987 45899999653

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.82  E-value=0.0093  Score=47.64  Aligned_cols=34  Identities=24%  Similarity=0.492  Sum_probs=31.6

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  239 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~  239 (488)
                      ++++++|||||.+|.+-+..|.+.|.+|+++.+.
T Consensus        12 ~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1          12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            6899999999999999999999999999999653

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=94.79  E-value=0.011  Score=54.22  Aligned_cols=36  Identities=25%  Similarity=0.277  Sum_probs=31.3

Q ss_pred             eEEEECCCHHHHHHHHHHH-----hCCCcEEEEecCCcCcc
Q 011351          209 KVVVVGGGYIGMEVAAAAV-----GWKLDTTIIFPENHLLQ  244 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~-----~~g~~v~lv~~~~~~l~  244 (488)
                      .|+|||+|+.|+-+|..|+     +.|.+|+++++.+.+..
T Consensus         9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~~   49 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVY   49 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCC
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCCc
Confidence            5999999999999999996     57999999999876543

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=94.78  E-value=0.016  Score=46.89  Aligned_cols=34  Identities=9%  Similarity=0.099  Sum_probs=30.8

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      +||+|||+|.-|...|..|.+.|+   +|+++++++.
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~---~V~~~~r~~~   34 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGH---EVQGWLRVPQ   34 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCC---ceEEEEcCHH
Confidence            479999999999999999999988   8999998754

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=94.76  E-value=0.024  Score=45.48  Aligned_cols=38  Identities=18%  Similarity=0.267  Sum_probs=33.1

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      .+++||.|||+|..|.++|+.|...+. -.++.|+|..+
T Consensus        18 ~~~~KV~IIGaG~VG~~~A~~l~~~~l-~~ElvLiD~~~   55 (160)
T d1i0za1          18 VPNNKITVVGVGQVGMACAISILGKSL-ADELALVDVLE   55 (160)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSCH
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCC-CcEEEEEEecc
Confidence            446799999999999999999999987 56899999753

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.75  E-value=0.014  Score=53.49  Aligned_cols=58  Identities=29%  Similarity=0.385  Sum_probs=43.2

Q ss_pred             EEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccc-----------------cCHHHHHHHHHHHHHcCcEEEc
Q 011351          210 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-----------------FTPSLAQRYEQLYQQNGVKFVK  268 (488)
Q Consensus       210 vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~-----------------~~~~~~~~~~~~l~~~GV~v~~  268 (488)
                      |+|||+|..|+-+|..|++.|.+|+++++++++-.+.                 +.+ ....+.+.+++.|++...
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~-~~~~~~~l~~~lgl~~~~   76 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGP-TQNRILRLAKELGLETYK   76 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTCCEEEEESSSSSBTTCCEECCTTTSCEESSCCEECT-TCHHHHHHHHHTTCCEEE
T ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcceeeEEECCCCcEEeCCceEeCC-CChHHHHHHHHcCCccee
Confidence            8999999999999999999999999999887653221                 111 123456677788876543

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.57  E-value=0.017  Score=48.14  Aligned_cols=36  Identities=17%  Similarity=0.283  Sum_probs=32.4

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      ++-++|.|||+|.-|...|..+++.|+   +|+++|.++
T Consensus         2 ~~IkkvaViGaG~mG~~iA~~~a~~G~---~V~l~D~~~   37 (192)
T d1f0ya2           2 IIVKHVTVIGGGLMGAGIAQVAAATGH---TVVLVDQTE   37 (192)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSCH
T ss_pred             ceeEEEEEECcCHHHHHHHHHHHhCCC---cEEEEECCh
Confidence            345799999999999999999999998   899999875

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=94.47  E-value=0.021  Score=45.19  Aligned_cols=34  Identities=21%  Similarity=0.426  Sum_probs=30.3

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~   86 (488)
                      +||.|||+|..|.++|..|..++. -.++.|+|.+
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~-~~elvL~Di~   35 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGV-ADDYVFIDAN   35 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSS
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCC-CceEEEEecc
Confidence            689999999999999999999886 4589999865

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=94.42  E-value=0.02  Score=50.02  Aligned_cols=35  Identities=17%  Similarity=0.270  Sum_probs=32.3

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcC
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  242 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~  242 (488)
                      ..|+|||+|+.|+-+|..|++.|.+|+++++.+.+
T Consensus         5 ~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~   39 (253)
T d2gqfa1           5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKI   39 (253)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            46999999999999999999999999999998754

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=94.23  E-value=0.031  Score=44.46  Aligned_cols=37  Identities=30%  Similarity=0.482  Sum_probs=32.6

Q ss_pred             CCCCCeEEEEc-CchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           48 ANENREFVIVG-GGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        48 ~~~~~~vvIIG-gG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      .+.+++|.||| .|.-|.+.|..|++.|+   +|+++|++.
T Consensus         6 ~~~~~kI~iIGg~G~mG~~la~~L~~~G~---~V~~~d~~~   43 (152)
T d2pv7a2           6 NSDIHKIVIVGGYGKLGGLFARYLRASGY---PISILDRED   43 (152)
T ss_dssp             CTTCCCEEEETTTSHHHHHHHHHHHTTTC---CEEEECTTC
T ss_pred             CCCCCeEEEEcCCCHHHHHHHHHHHHcCC---CcEeccccc
Confidence            45678999999 69999999999999998   899998754

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=94.20  E-value=0.021  Score=46.68  Aligned_cols=34  Identities=15%  Similarity=0.270  Sum_probs=31.7

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  240 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~  240 (488)
                      .|+|+|+|+|.+|.-+|..|.+.|.+|+++.|..
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~   35 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTL   35 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCh
Confidence            5899999999999999999999999999998864

>d1gesa3 d.87.1.1 (A:336-450) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=94.17  E-value=0.017  Score=43.67  Aligned_cols=54  Identities=7%  Similarity=-0.094  Sum_probs=41.5

Q ss_pred             cEEEEEEE--CCEEEEEEeecCChHHhhHHHHH-HhcCCCCC-h-hhhcCCCcHHHHHH
Q 011351          423 KIATFWID--SGKLKGVLVESGSPEEFQLLPTL-ARSQPFVD-K-AKLQQASSVEEALE  476 (488)
Q Consensus       423 ~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~-~-~~~~~~~~~~~~~~  476 (488)
                      .+.++.++  +++|+|+.+++++++++.....+ ++++.+++ . ...+.|||++|++.
T Consensus        54 g~~k~v~~~~~~~IlGa~ivG~~A~ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~  112 (115)
T d1gesa3          54 CRMKLVCVGSEEKIVGIHGIGFGMDEMLQGFAVALKMGATKKDFDNTVAIHPTAAEEFV  112 (115)
T ss_dssp             EEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGG
T ss_pred             ceEEEEEecCCcEEEEEEEECCCHHHHHHHHHHHHHcCCcHHHHhcCcccCCcHHHHHH
Confidence            46666664  68999999999999888876654 68887776 2 34588999999875

>d1feca3 d.87.1.1 (A:358-485) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=94.13  E-value=0.013  Score=45.30  Aligned_cols=59  Identities=14%  Similarity=0.121  Sum_probs=43.9

Q ss_pred             cEEEEEEE--CCEEEEEEeecCChHHhhHHHH-HHhcCCCCCh--hhhcCCCcHHHHHHHHHcc
Q 011351          423 KIATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVDK--AKLQQASSVEEALEIARAA  481 (488)
Q Consensus       423 ~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  481 (488)
                      .+.++.++  +|+|+|+.+++.+++++..... +++++.+++.  ..++.|||++|+|.+...+
T Consensus        53 ~~~klv~~~~~g~iLGa~ivG~~A~ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~~~~~~  116 (128)
T d1feca3          53 FMVRIVTNHADGEVLGVHMLGDSSPEIIQSVAICLKMGAKISDFYNTIGVHPTSAEELCSMRTP  116 (128)
T ss_dssp             EEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGGSCCSC
T ss_pred             ceEEEeecCCCCceeEEEEECCCHHHHHHHHHHHHHcCCcHHHHhcCcCCCCcHHHHHHHHHHH
Confidence            35566554  5999999999999988776655 5688887762  3458899999998765433

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.10  E-value=0.031  Score=44.80  Aligned_cols=38  Identities=18%  Similarity=0.329  Sum_probs=32.5

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      +++.||.|||+|..|.++|+.|...+. -.++.|+|.++
T Consensus        17 ~~~~KI~IIGaG~VG~~~A~~l~~~~l-~~elvL~D~~~   54 (159)
T d2ldxa1          17 LSRCKITVVGVGDVGMACAISILLKGL-ADELALVDADT   54 (159)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHTTTS-CSEEEEECSCH
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCC-CCEEEEEeCCc
Confidence            445689999999999999999999987 55899998653

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=94.07  E-value=0.032  Score=43.86  Aligned_cols=36  Identities=19%  Similarity=0.208  Sum_probs=30.5

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      .||.|||+|..|.++|..|...+. -.++.|+|..+.
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l-~~el~L~D~~~~   37 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQT-ANELVLIDVFKE   37 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC-SSEEEEECCC--
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCC-CCEEEEEeccCC
Confidence            589999999999999999999887 458999996643

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.06  E-value=0.023  Score=47.34  Aligned_cols=38  Identities=26%  Similarity=0.458  Sum_probs=33.9

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcc
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ  244 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~  244 (488)
                      -++|.|||+|..|..+|..++..|.+|+++++.+..+.
T Consensus         4 IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~   41 (192)
T d1f0ya2           4 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILA   41 (192)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred             eEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHH
Confidence            37899999999999999999999999999988765444

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.72  E-value=0.052  Score=40.46  Aligned_cols=40  Identities=18%  Similarity=0.229  Sum_probs=34.9

Q ss_pred             cCCCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351           47 FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (488)
Q Consensus        47 ~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   89 (488)
                      ..+...+|.|||||.=|...|...++.|+   ++.++|+++..
T Consensus         7 ~~~~~~kigIlGgGQL~rMla~aA~~lG~---~v~v~d~~~~~   46 (111)
T d1kjqa2           7 LRPAATRVMLLGSGELGKEVAIECQRLGV---EVIAVDRYADA   46 (111)
T ss_dssp             TSTTCCEEEEESCSHHHHHHHHHHHTTTC---EEEEEESSTTC
T ss_pred             CCCCCCEEEEEeCCHHHHHHHHHHHHCCC---EEEEEcCCCCC
Confidence            34556799999999999999999999988   89999988764

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.62  E-value=0.029  Score=47.10  Aligned_cols=33  Identities=18%  Similarity=0.190  Sum_probs=30.1

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      ++|.|||.|..|+..|..|++.|+   +|+.+|.+.
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~---~V~g~D~n~   33 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGH---EVIGVDVSS   33 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC---EEEEECSCH
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCC---cEEEEeCCH
Confidence            369999999999999999999988   899999764

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=93.58  E-value=0.032  Score=49.22  Aligned_cols=32  Identities=25%  Similarity=0.363  Sum_probs=30.0

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  240 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~  240 (488)
                      .|+|||+|.+|+-+|..|+++|.+|+++++.+
T Consensus         5 DvvIIGaGi~Gls~A~~La~~G~~V~viE~~~   36 (281)
T d2gf3a1           5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD   36 (281)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            48999999999999999999999999999864

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=93.53  E-value=0.046  Score=42.87  Aligned_cols=34  Identities=12%  Similarity=0.303  Sum_probs=30.3

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~   86 (488)
                      .||.|||+|..|.++|+.|...+. -.++.|+|.+
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l-~~ElvL~D~~   35 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGI-AREIVLEDIA   35 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCC-CcEEEEEEec
Confidence            589999999999999999999987 5589999855

>d1h6va3 d.87.1.1 (A:367-499) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.44  E-value=0.018  Score=44.83  Aligned_cols=48  Identities=10%  Similarity=0.038  Sum_probs=38.3

Q ss_pred             ECCEEEEEEeecCChHHhhHHHH-HHhcCCCCC--hhhhcCCCcHHHHHHH
Q 011351          430 DSGKLKGVLVESGSPEEFQLLPT-LARSQPFVD--KAKLQQASSVEEALEI  477 (488)
Q Consensus       430 ~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~  477 (488)
                      ++++|+|+.+++.+++++.+.-. +++++.+++  ....+.|||++|++..
T Consensus        65 ~~~~ILGa~ivg~~A~ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~~~~  115 (133)
T d1h6va3          65 DNERVVGFHVLGPNAGEVTQGFAAALKCGLTKQQLDSTIGIHPVCAEIFTT  115 (133)
T ss_dssp             GTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSCCCTTCGGGGGGG
T ss_pred             CcccEEEEEEeCCCHHHHHHHHHHHHHcCCCHHHHhhccccCCCHHHHHHH
Confidence            36899999998999988776655 578888886  3446999999999843

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=93.39  E-value=0.021  Score=47.42  Aligned_cols=36  Identities=14%  Similarity=0.163  Sum_probs=31.2

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      +.+.+|+|||+|.=|.+.|..|.+.|.   +|+|+.+++
T Consensus         5 ~~m~KI~ViGaG~wGtAlA~~La~~g~---~V~l~~r~~   40 (189)
T d1n1ea2           5 LYLNKAVVFGSGAFGTALAMVLSKKCR---EVCVWHMNE   40 (189)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHTTEE---EEEEECSCH
T ss_pred             ceeceEEEECCCHHHHHHHHHHHHcCC---eEEEEEecH
Confidence            445689999999999999999999876   899998764

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=93.39  E-value=0.036  Score=45.83  Aligned_cols=35  Identities=14%  Similarity=0.243  Sum_probs=31.4

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      +-++|.|||+|.-|...|..+++.|+   +|+++|.++
T Consensus         3 ~I~~vaViGaG~mG~~iA~~~a~~G~---~V~l~D~~~   37 (186)
T d1wdka3           3 DVKQAAVLGAGIMGGGIAYQSASKGT---PILMKDINE   37 (186)
T ss_dssp             CCSSEEEECCHHHHHHHHHHHHHTTC---CEEEECSSH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCC---eEEEEECCH
Confidence            35789999999999999999999988   899999875

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=93.20  E-value=0.027  Score=46.64  Aligned_cols=38  Identities=18%  Similarity=0.214  Sum_probs=33.5

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCc
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL  243 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l  243 (488)
                      +-++|.|||+|..|..+|..++..|.+|+++++.+.-+
T Consensus         3 ~I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l   40 (186)
T d1wdka3           3 DVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGI   40 (186)
T ss_dssp             CCSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHH
Confidence            35789999999999999999999999999998876443

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=93.19  E-value=0.051  Score=42.60  Aligned_cols=34  Identities=12%  Similarity=0.292  Sum_probs=29.6

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      +||.|||+|..|.++|..|...+..  ++.++|..+
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~--dl~l~D~~~   35 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELG--DIVLLDIVE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCS--EEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcc--eEEEEeecc
Confidence            5899999999999999999998763  799998653

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=93.07  E-value=0.058  Score=42.26  Aligned_cols=34  Identities=18%  Similarity=0.368  Sum_probs=30.1

Q ss_pred             eEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      ||.|||+|.-|.+.|..|...+. -.++.|+|.++
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l-~~el~L~Di~~   35 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQL-ARELVLLDVVE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCC-CceEEEecccc
Confidence            79999999999999999999886 45899999664

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=92.85  E-value=0.059  Score=43.54  Aligned_cols=35  Identities=23%  Similarity=0.460  Sum_probs=30.5

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~   86 (488)
                      +.++|+|+|+|-++-+++..|.+.|..  +|+|+.++
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~--~I~I~nR~   50 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFE--KLKIYARN   50 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCC--CEEEECSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCC--EEEEeccc
Confidence            467899999999999999999999864  79998765

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.46  E-value=0.076  Score=42.90  Aligned_cols=36  Identities=22%  Similarity=0.368  Sum_probs=30.7

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      |++|.|||.|.-|.+.|..|++.|+ ..+|+.+|+++
T Consensus         1 Mk~I~IIG~G~mG~sla~~L~~~g~-~~~I~~~D~~~   36 (171)
T d2g5ca2           1 MQNVLIVGVGFMGGSFAKSLRRSGF-KGKIYGYDINP   36 (171)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHTTC-CSEEEEECSCH
T ss_pred             CCEEEEEccCHHHHHHHHHHHhcCC-CeEEEEEECCh
Confidence            3579999999999999999999987 56788888653

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.42  E-value=0.073  Score=41.66  Aligned_cols=35  Identities=17%  Similarity=0.154  Sum_probs=30.2

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      .||.|||+|..|.++|..|...+. -.++.|+|.++
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~-~~elvL~Di~~   35 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLD-VDEIALVDIAE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSC-CSEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCc-CceEEEEeccc
Confidence            379999999999999999998886 45899998653

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=92.36  E-value=0.075  Score=42.60  Aligned_cols=34  Identities=18%  Similarity=0.109  Sum_probs=31.3

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcC
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  242 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~  242 (488)
                      +|+|+|+|.+|.-+|..|.+.|.+|+++.|.+..
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~   35 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQP   35 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCS
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHH
Confidence            6899999999999999999999999999987643

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=92.00  E-value=0.1  Score=41.24  Aligned_cols=35  Identities=20%  Similarity=0.379  Sum_probs=29.9

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      +.||.|||+|..|.++|..|.+.+..  ++.|+|.++
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~--el~L~Di~~   37 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLG--DVVLFDIVK   37 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCC--EEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCC--eEEEEeccC
Confidence            46899999999999999988888763  899999654

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.95  E-value=0.09  Score=40.99  Aligned_cols=34  Identities=18%  Similarity=0.326  Sum_probs=29.8

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~   86 (488)
                      .||.|||+|..|.++|..|...+. -.++.|+|.+
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l-~~el~L~Di~   34 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGF-AREMVLIDVD   34 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-CCEEEEEecc
Confidence            379999999999999999999887 5589999855

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.95  E-value=0.082  Score=44.16  Aligned_cols=36  Identities=14%  Similarity=0.309  Sum_probs=31.3

Q ss_pred             CCCCeEEEEcC-chHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           49 NENREFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        49 ~~~~~vvIIGg-G~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      |.+++|+|+|| |..|-..+.+|.++|+   +|+++.+++
T Consensus         1 m~~kkIlV~GatG~iG~~v~~~Ll~~g~---~V~~~~R~~   37 (205)
T d1hdoa_           1 MAVKKIAIFGATGQTGLTTLAQAVQAGY---EVTVLVRDS   37 (205)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCG
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcC---EEEEEEcCh
Confidence            34678999995 9999999999999987   899998764

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=91.94  E-value=0.079  Score=48.66  Aligned_cols=33  Identities=21%  Similarity=0.135  Sum_probs=30.5

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  241 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~  241 (488)
                      .|+|||+|..|+-+|..|++.|.+|.+++++.+
T Consensus         4 ~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~   36 (367)
T d1n4wa1           4 PAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQL   36 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             eEEEeCcCHHHHHHHHHHHHCcCeEEEEecCCC
Confidence            489999999999999999999999999999743

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.92  E-value=0.068  Score=41.93  Aligned_cols=33  Identities=12%  Similarity=0.208  Sum_probs=29.1

Q ss_pred             eEEEEcC-chHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351           53 EFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKE   86 (488)
Q Consensus        53 ~vvIIGg-G~AGl~aA~~L~~~g~~~~~V~lie~~   86 (488)
                      ||+|||| |..|.++|..|...+. -.++.|+|.+
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~-~~elvLiDi~   35 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPL-VSRLTLYDIA   35 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTT-CSEEEEEESS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCc-cceEEEEecc
Confidence            7999996 9999999999999887 4589999864

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=91.63  E-value=0.095  Score=40.35  Aligned_cols=32  Identities=16%  Similarity=0.156  Sum_probs=29.6

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  239 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~  239 (488)
                      |+++|+|.|..|..+|..|.+.|.+|++++..
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d   32 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDIN   32 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCc
Confidence            67999999999999999999999999998765

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=91.47  E-value=0.085  Score=41.39  Aligned_cols=34  Identities=18%  Similarity=0.352  Sum_probs=29.4

Q ss_pred             eEEEEcC-chHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           53 EFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        53 ~vvIIGg-G~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      ||.|||+ |..|.++|..|...+. -.++.|+|..+
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l-~~el~L~D~~~   36 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPF-MKDLVLIGREH   36 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTT-CCEEEEEECGG
T ss_pred             EEEEECCCChHHHHHHHHHHhCCc-ccccccccchh
Confidence            7999996 9999999999999886 45899998653

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=91.47  E-value=0.11  Score=42.01  Aligned_cols=35  Identities=11%  Similarity=0.249  Sum_probs=30.7

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~   86 (488)
                      .+.++|+|+|+|-|+-+++..|.+.|.   +|+|+.+.
T Consensus        16 ~~~k~vlIlGaGGaarai~~al~~~g~---~i~I~nRt   50 (170)
T d1nyta1          16 RPGLRILLIGAGGASRGVLLPLLSLDC---AVTITNRT   50 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSS
T ss_pred             CCCCEEEEECCcHHHHHHHHHhcccce---EEEeccch
Confidence            456899999999999999999999875   79998765

>d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=91.46  E-value=0.049  Score=42.68  Aligned_cols=38  Identities=18%  Similarity=0.093  Sum_probs=32.5

Q ss_pred             HHCCCeEEeCC--cEEEEeCCCcEEEeCCCcEEEeccEEe
Q 011351          131 KEKGIEMIYQD--PVTSIDIEKQTLITNSGKLLKYGSLIV  168 (488)
Q Consensus       131 ~~~~i~~~~~~--~v~~id~~~~~v~~~~g~~i~yd~lVl  168 (488)
                      ++.+|+++.+.  .+.++|...+++++.+|+++.||.|.+
T Consensus        99 ~~~~I~~~~~~~~~~v~vd~~~~~~~~~~Ge~v~yD~l~v  138 (141)
T d1fcda2          99 ENAMIEWHPGPDSAVVKVDGGEMMVETAFGDEFKADVINL  138 (141)
T ss_dssp             SSCSEEEECSSTTCEEEEEETTTEEEETTCCEEECSEEEE
T ss_pred             HhcCceeeecCCceEEeecCCcEEEEeCCCcEEeeeEEEe
Confidence            45689988754  588999999999999999999999876

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=91.32  E-value=0.096  Score=48.13  Aligned_cols=32  Identities=25%  Similarity=0.287  Sum_probs=30.0

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  240 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~  240 (488)
                      .++|||+|..|+-+|..|++.|.+|++++++.
T Consensus         9 dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~   40 (370)
T d3coxa1           9 PALVIGSGYGGAVAALRLTQAGIPTQIVEMGR   40 (370)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            48999999999999999999999999999874

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=91.01  E-value=0.17  Score=37.79  Aligned_cols=35  Identities=20%  Similarity=0.248  Sum_probs=29.9

Q ss_pred             cCCeEEEECCCH-----------HHHHHHHHHHhCCCcEEEEecCC
Q 011351          206 KAKKVVVVGGGY-----------IGMEVAAAAVGWKLDTTIIFPEN  240 (488)
Q Consensus       206 ~~~~vvVvG~G~-----------~g~e~A~~l~~~g~~v~lv~~~~  240 (488)
                      ..++++|+|+|+           .+++++.+|++.|.++.++..++
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NP   48 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNP   48 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCT
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecCh
Confidence            357899999986           57888999999999999998774

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=90.98  E-value=0.14  Score=40.35  Aligned_cols=33  Identities=15%  Similarity=0.254  Sum_probs=29.8

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      -+|||+|.|.-|...+..|.+.|.   ++++||.++
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~~~---~v~vId~d~   36 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQRGQ---NVTVISNLP   36 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTC---CEEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCC---CEEEEeccc
Confidence            479999999999999999999887   799999764

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=90.91  E-value=0.22  Score=35.22  Aligned_cols=74  Identities=23%  Similarity=0.174  Sum_probs=51.1

Q ss_pred             CeEEEECCCHHHH-HHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEE
Q 011351          208 KKVVVVGGGYIGM-EVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV  286 (488)
Q Consensus       208 ~~vvVvG~G~~g~-e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v  286 (488)
                      .++-++|-|-+|+ -+|..|.+.|..|+-.++.+       .     ...+.|++.|+++..+.....+           
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~-------~-----~~t~~L~~~Gi~i~~gh~~~~i-----------   58 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEE-------T-----ERTAYLRKLGIPIFVPHSADNW-----------   58 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSC-------C-----HHHHHHHHTTCCEESSCCTTSC-----------
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCC-------C-----hhHHHHHHCCCeEEeeeccccc-----------
Confidence            3677887666665 46899999999999876442       1     2334589999999876432111           


Q ss_pred             EeCCCcEEEcCEEEEeecCccCChh
Q 011351          287 KLEDGSTIDADTIVIGIGAKPTVSP  311 (488)
Q Consensus       287 ~l~~g~~i~~D~vi~a~G~~p~~~~  311 (488)
                             -.+|.||++.+...+...
T Consensus        59 -------~~~d~vV~SsAI~~~npe   76 (89)
T d1j6ua1          59 -------YDPDLVIKTPAVRDDNPE   76 (89)
T ss_dssp             -------CCCSEEEECTTCCTTCHH
T ss_pred             -------CCCCEEEEecCcCCCCHH
Confidence                   247899999998776554

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.89  E-value=0.11  Score=48.04  Aligned_cols=34  Identities=26%  Similarity=0.412  Sum_probs=30.8

Q ss_pred             eEEEECCCHHHHHHHHHHHh------CCCcEEEEecCCcC
Q 011351          209 KVVVVGGGYIGMEVAAAAVG------WKLDTTIIFPENHL  242 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~------~g~~v~lv~~~~~~  242 (488)
                      .|+|||+|+.|+-+|..|++      .|.+|.|+++...+
T Consensus        34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~p   73 (380)
T d2gmha1          34 DVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHI   73 (380)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSST
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCC
Confidence            59999999999999999987      79999999998655

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=90.85  E-value=0.11  Score=42.35  Aligned_cols=32  Identities=22%  Similarity=0.305  Sum_probs=28.6

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~   86 (488)
                      ++|.|||+|.-|.+.|..|.+.|.   +|+|+.+.
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~---~V~l~~r~   32 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGN---EVRIWGTE   32 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCC---EEEEECCG
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC---EEEEEEec
Confidence            479999999999999999999987   89998753

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=90.79  E-value=0.13  Score=41.21  Aligned_cols=31  Identities=26%  Similarity=0.245  Sum_probs=28.4

Q ss_pred             eEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (488)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~   86 (488)
                      +|.|||.|.-|.+.|..|+++|+   +|+++|++
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~---~V~~~d~~   32 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGH---YLIGVSRQ   32 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC---EEEEECSC
T ss_pred             EEEEEeecHHHHHHHHHHHHCCC---EEEEEECC
Confidence            69999999999999999999987   89998865

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=90.75  E-value=0.14  Score=41.78  Aligned_cols=36  Identities=14%  Similarity=0.333  Sum_probs=31.3

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      ..++|+|||+|-+|-+++..|.+.|.+  +|+|+.+.+
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~~--~i~i~nR~~   52 (182)
T d1vi2a1          17 KGKTMVLLGAGGASTAIGAQGAIEGLK--EIKLFNRRD   52 (182)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCS--EEEEEECSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHhhcCCc--eEeeeccch
Confidence            468999999999999999999999864  899988653

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=90.34  E-value=0.11  Score=35.65  Aligned_cols=36  Identities=14%  Similarity=0.201  Sum_probs=32.2

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA   89 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~   89 (488)
                      +++|-|||||-=|-+.+....+.|+   ++.++++++..
T Consensus         1 ~k~vgIlG~GQLgrMl~~Aa~~LG~---~v~vldp~~~~   36 (78)
T d3etja2           1 MKQVCVLGNGQLGRMLRQAGEPLGI---AVWPVGLDAEP   36 (78)
T ss_dssp             CEEEEEEBCSHHHHHHHHHHGGGTE---EEEEECTTSCG
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCC---EEEEEcCCCCC
Confidence            3689999999999999999999998   89999987654

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=90.20  E-value=0.38  Score=42.30  Aligned_cols=59  Identities=25%  Similarity=0.483  Sum_probs=43.0

Q ss_pred             cCCeEEEECC-CHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcC
Q 011351          206 KAKKVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG  269 (488)
Q Consensus       206 ~~~~vvVvG~-G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~  269 (488)
                      +.++|+|.|+ |.+|..++..|.+.|.+|+.+.|.+...    +... ......+...+++++.+
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~----~~~~-~~~~~~~~~~~v~~v~~   61 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVS----NIDK-VQMLLYFKQLGAKLIEA   61 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSS----CHHH-HHHHHHHHTTTCEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCccc----chhH-HHHHhhhccCCcEEEEe
Confidence            3467999996 9999999999999999999998875432    2222 23334567778887743

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=89.88  E-value=0.15  Score=39.02  Aligned_cols=31  Identities=19%  Similarity=0.276  Sum_probs=28.8

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  239 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~  239 (488)
                      +|+|+|+|..|..++..|.+.|.+|++++..
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d   32 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDID   32 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCC
Confidence            6899999999999999999999999999764

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=89.62  E-value=0.2  Score=39.84  Aligned_cols=36  Identities=17%  Similarity=0.477  Sum_probs=31.0

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~   86 (488)
                      .+.++|+|||+|-.|-..+..|...|..  +++++.+.
T Consensus        22 l~~~~ilviGaG~~g~~v~~~L~~~g~~--~i~v~nRt   57 (159)
T d1gpja2          22 LHDKTVLVVGAGEMGKTVAKSLVDRGVR--AVLVANRT   57 (159)
T ss_dssp             CTTCEEEEESCCHHHHHHHHHHHHHCCS--EEEEECSS
T ss_pred             cccCeEEEECCCHHHHHHHHHHHhcCCc--EEEEEcCc
Confidence            4578999999999999999999999863  68888755

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=89.31  E-value=0.21  Score=38.88  Aligned_cols=32  Identities=16%  Similarity=0.291  Sum_probs=28.3

Q ss_pred             eEEEEc-CchHHHHHHHHHHHcCCCCCcEEEEcC
Q 011351           53 EFVIVG-GGNAAGYAARTFVEHGMADGRLCIVSK   85 (488)
Q Consensus        53 ~vvIIG-gG~AGl~aA~~L~~~g~~~~~V~lie~   85 (488)
                      ||.||| +|..|.++|..|...+. -.++.|+|-
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l-~~el~L~Di   34 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDI-ADEVVFVDI   34 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-CSEEEEECC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCC-CCEEEEEec
Confidence            799999 69999999999999987 558999884

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.30  E-value=0.18  Score=40.51  Aligned_cols=35  Identities=14%  Similarity=0.218  Sum_probs=29.4

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      ...|+|+|+|+.|+.++..++..|..  +|+++|.++
T Consensus        27 gd~VlI~G~G~iG~~~~~~a~~~G~~--~Vi~~d~~~   61 (171)
T d1pl8a2          27 GHKVLVCGAGPIGMVTLLVAKAMGAA--QVVVTDLSA   61 (171)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCS--EEEEEESCH
T ss_pred             CCEEEEECCCccHHHHHHHHHHcCCc--eEEeccCCH
Confidence            45899999999999999999988752  788888653

>d1mo9a3 d.87.1.1 (A:384-523) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=89.29  E-value=0.22  Score=38.58  Aligned_cols=57  Identities=16%  Similarity=0.052  Sum_probs=42.0

Q ss_pred             CcEEEEEEE--CCEEEEEEeecCChHHhhHHHH-HHhcCCCCCh-hh---hcCCCcHHHHHHHH
Q 011351          422 PKIATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVDK-AK---LQQASSVEEALEIA  478 (488)
Q Consensus       422 ~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~---~~~~~~~~~~~~~~  478 (488)
                      ..+.|+.++  +|+|+|+++++.+++++...-. +|+++.+++. ..   .+.|||..|.|...
T Consensus        67 ~G~vKlv~d~~t~~IlGa~ivG~~A~ElI~~~~~ai~~~~t~~dl~~~~~i~~hPT~~~~l~~l  130 (140)
T d1mo9a3          67 SGFQKIVIDAKTRKVLGAHHVGYGAKDAFQYLNVLIKQGLTVDELGDMDELFLNPTHFIQLSRL  130 (140)
T ss_dssp             GCEEEEEEETTTCBEEEEEEEESSCHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSCCHHHHHHH
T ss_pred             CceEEEEEecCCCcEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHHhcCCCCCCCChHHHHHHH
Confidence            457777774  5999999999998888776655 5688887763 33   46789998876433

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=89.22  E-value=0.16  Score=36.51  Aligned_cols=77  Identities=17%  Similarity=0.149  Sum_probs=53.0

Q ss_pred             hcCCeEEEECCCHHHHHH-HHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcE
Q 011351          205 EKAKKVVVVGGGYIGMEV-AAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV  283 (488)
Q Consensus       205 ~~~~~vvVvG~G~~g~e~-A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v  283 (488)
                      ...+++.++|-|-+|+-. |..|.++|.+|+-.+...       .     ...+.|++.|+++..+.....+        
T Consensus         6 ~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~-------~-----~~~~~L~~~Gi~v~~g~~~~~i--------   65 (96)
T d1p3da1           6 RRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIAD-------G-----VVTQRLAQAGAKIYIGHAEEHI--------   65 (96)
T ss_dssp             TTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCC-------S-----HHHHHHHHTTCEEEESCCGGGG--------
T ss_pred             hhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCC-------C-----hhhhHHHHCCCeEEECCccccC--------
Confidence            467899999877666544 999999999999876542       1     1224567789998876432111        


Q ss_pred             EEEEeCCCcEEEcCEEEEeecCccCChh
Q 011351          284 AAVKLEDGSTIDADTIVIGIGAKPTVSP  311 (488)
Q Consensus       284 ~~v~l~~g~~i~~D~vi~a~G~~p~~~~  311 (488)
                                -..|.||.+.+...+...
T Consensus        66 ----------~~~d~vV~S~AI~~~npe   83 (96)
T d1p3da1          66 ----------EGASVVVVSSAIKDDNPE   83 (96)
T ss_dssp             ----------TTCSEEEECTTSCTTCHH
T ss_pred             ----------CCCCEEEECCCcCCCCHH
Confidence                      135889999988765443

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=89.10  E-value=0.19  Score=43.28  Aligned_cols=36  Identities=19%  Similarity=0.345  Sum_probs=32.4

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      ..+|+|||.|--|-.+|..|.+.|..  +++|+|.+..
T Consensus        30 ~~~VliiG~GglGs~va~~La~~Gvg--~i~lvD~D~V   65 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASAGVG--NLTLLDFDTV   65 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCS--EEEEECCCBC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCC--eEEEECCccc
Confidence            57999999999999999999999974  9999997654

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=88.83  E-value=0.18  Score=34.60  Aligned_cols=33  Identities=21%  Similarity=0.243  Sum_probs=30.3

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  240 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~  240 (488)
                      |+|.|+|+|..|..++.+..++|.++.++...+
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~   34 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDA   34 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTS
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCC
Confidence            679999999999999999999999999998764

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.68  E-value=0.041  Score=47.12  Aligned_cols=25  Identities=32%  Similarity=0.470  Sum_probs=22.8

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcE
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDT  233 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v  233 (488)
                      +|+|||+|.+|+-+|..|++.|.+|
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v   26 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSV   26 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTT
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCc
Confidence            6999999999999999999998754

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=88.47  E-value=0.25  Score=35.48  Aligned_cols=38  Identities=13%  Similarity=0.166  Sum_probs=31.8

Q ss_pred             ccCCCCCeEEEEcCchHHHHH-HHHHHHcCCCCCcEEEEcCC
Q 011351           46 SFANENREFVIVGGGNAAGYA-ARTFVEHGMADGRLCIVSKE   86 (488)
Q Consensus        46 ~~~~~~~~vvIIGgG~AGl~a-A~~L~~~g~~~~~V~lie~~   86 (488)
                      |++.+.+++-+||-|=+|+++ |..|.++|+   +|+--|..
T Consensus         3 ~~~~~~~~ihfiGigG~GMs~LA~~L~~~G~---~VsGSD~~   41 (96)
T d1p3da1           3 PEMRRVQQIHFIGIGGAGMSGIAEILLNEGY---QISGSDIA   41 (96)
T ss_dssp             CCCTTCCEEEEETTTSTTHHHHHHHHHHHTC---EEEEEESC
T ss_pred             ccchhCCEEEEEEECHHHHHHHHHHHHhCCC---EEEEEeCC
Confidence            445667899999999999998 899999998   78877744

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=88.11  E-value=0.96  Score=35.20  Aligned_cols=80  Identities=11%  Similarity=0.081  Sum_probs=50.8

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEcCCeEEEEEeCCCCcEEEEE
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK  287 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~  287 (488)
                      .+++|+|.|..|..++..|.+.|.+++++...+         +-.....+.+...|+.++.+-..       +.   . .
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~---------~~~~~~~~~~~~~~~~vi~Gd~~-------d~---~-~   63 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLP---------EDDIKQLEQRLGDNADVIPGDSN-------DS---S-V   63 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC---------HHHHHHHHHHHCTTCEEEESCTT-------SH---H-H
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEeccc---------hhHHHHHHHhhcCCcEEEEccCc-------ch---H-H
Confidence            469999999999999999999999999986543         22222233445568887765210       00   0 0


Q ss_pred             eCCCcEEEcCEEEEeecCcc
Q 011351          288 LEDGSTIDADTIVIGIGAKP  307 (488)
Q Consensus       288 l~~g~~i~~D~vi~a~G~~p  307 (488)
                      +..-..-++|.+|++++-..
T Consensus        64 L~~a~i~~a~~vi~~~~~d~   83 (153)
T d1id1a_          64 LKKAGIDRCRAILALSDNDA   83 (153)
T ss_dssp             HHHHTTTTCSEEEECSSCHH
T ss_pred             HHHhccccCCEEEEccccHH
Confidence            11101125888999877643

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.02  E-value=0.3  Score=39.11  Aligned_cols=35  Identities=17%  Similarity=0.254  Sum_probs=29.4

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      ...+|+|+|+|+.|+.++..++..|.   +|++++.++
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~---~vi~~~~~~   61 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGA---ETYVISRSS   61 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTC---EEEEEESSS
T ss_pred             CCCEEEEECCCCcchhHHHHhhhccc---cccccccch
Confidence            35689999999999999988888876   788888653

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=88.01  E-value=0.32  Score=37.92  Aligned_cols=34  Identities=12%  Similarity=0.163  Sum_probs=26.9

Q ss_pred             CeEEEEc-CchHHHHHHHHHHHc-CCCCCcEEEEcCC
Q 011351           52 REFVIVG-GGNAAGYAARTFVEH-GMADGRLCIVSKE   86 (488)
Q Consensus        52 ~~vvIIG-gG~AGl~aA~~L~~~-g~~~~~V~lie~~   86 (488)
                      .||.||| +|..|-++|..|..+ +. ..++.|+|.+
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~-~~el~L~D~~   36 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPS-GSELSLYDIA   36 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCT-TCEEEEECSS
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCC-CcEEEEeccc
Confidence            3799999 599999999988654 54 4589999854

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=87.96  E-value=0.19  Score=41.45  Aligned_cols=32  Identities=13%  Similarity=0.077  Sum_probs=27.3

Q ss_pred             CeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      ++|.|||.|..|+..|..++ .|+   +|+.+|.++
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~g~---~V~g~Din~   32 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-LQN---EVTIVDILP   32 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TTS---EEEEECSCH
T ss_pred             CEEEEECCChhHHHHHHHHH-CCC---cEEEEECCH
Confidence            36999999999999998775 476   899999775

>d1gtea1 a.1.2.2 (A:2-183) Dihydropyrimidine dehydrogenase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All alpha proteins
fold: Globin-like
superfamily: alpha-helical ferredoxin
family: Dihydropyrimidine dehydrogenase, N-terminal domain
domain: Dihydropyrimidine dehydrogenase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=87.86  E-value=0.013  Score=47.53  Aligned_cols=43  Identities=9%  Similarity=-0.093  Sum_probs=34.9

Q ss_pred             cccccccceeeccccCC--CCcccceec---ccccccccccccccccc
Q 011351            3 SVSNSLSFKHGLSLWCP--QSPSLHRIR---HSSAKNFQRRGFVVAYS   45 (488)
Q Consensus         3 ~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~   45 (488)
                      -.+|||+.++|++|.++  |+.+|.+..   .++.+....|+..+...
T Consensus       116 ~~~NP~p~icGRVCP~~~~CE~~C~r~~~~~~pV~I~~LeRfa~D~~~  163 (182)
T d1gtea1         116 FSDNPLGLTCGMVCPTSDLCVGGCNLYATEEGSINIGGLQQFASEVFK  163 (182)
T ss_dssp             HHHCTTHHHHHHHCCGGGSGGGGCGGGGSTTCCCCHHHHHHHHHHHHH
T ss_pred             hccCchHHHHhccCCCcchHHHhCeecCCCCCCeeecHHHHHHHHHHH
Confidence            35899999999999764  999999975   47888888887776543

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=87.81  E-value=0.46  Score=34.99  Aligned_cols=35  Identities=23%  Similarity=0.341  Sum_probs=31.5

Q ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Q 011351          207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  241 (488)
Q Consensus       207 ~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~  241 (488)
                      ..+|.|+|||..|..++.+..++|.++.++.+.+.
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            46799999999999999999999999999987643

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=87.80  E-value=0.26  Score=43.38  Aligned_cols=35  Identities=17%  Similarity=0.310  Sum_probs=30.3

Q ss_pred             CCCeEEEEcC-chHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           50 ENREFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        50 ~~~~vvIIGg-G~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      ++.||+|+|| |+.|...+.+|.+.|+   +|+++.+..
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~---~V~~~~R~~   37 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGH---PTYVLFRPE   37 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTC---CEEEECCSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCC---EEEEEECCC
Confidence            3567999997 9999999999999987   799988653

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.71  E-value=0.28  Score=39.15  Aligned_cols=35  Identities=14%  Similarity=0.174  Sum_probs=29.3

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      ...+|+|+|+|+.|+.++.-++..|.   +|+.++.++
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~ak~~G~---~Vi~~~~~~   61 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYARAMGL---HVAAIDIDD   61 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCCEEEEeeccccHHHHHHHHHHcCC---ccceecchh
Confidence            35689999999999999998888875   799988653

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=87.69  E-value=0.26  Score=43.08  Aligned_cols=36  Identities=14%  Similarity=0.327  Sum_probs=31.6

Q ss_pred             CCCeEEEEcC-chHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011351           50 ENREFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKEAY   88 (488)
Q Consensus        50 ~~~~vvIIGg-G~AGl~aA~~L~~~g~~~~~V~lie~~~~   88 (488)
                      .++||+|+|| |+-|-..+..|.+.|+   +|+++++++.
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~G~---~V~~l~R~~~   38 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDLGH---PTFLLVREST   38 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTC---CEEEECCCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC---eEEEEECCCc
Confidence            3689999998 9999999999999987   8999987643

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=87.37  E-value=0.28  Score=39.23  Aligned_cols=34  Identities=9%  Similarity=0.162  Sum_probs=29.1

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      ..+|+|+|+|+-|+.++..++..|.   +|+++|.++
T Consensus        27 g~~vlV~G~G~vG~~~~~~ak~~Ga---~vi~v~~~~   60 (170)
T d1e3ja2          27 GTTVLVIGAGPIGLVSVLAAKAYGA---FVVCTARSP   60 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred             CCEEEEEcccccchhhHhhHhhhcc---cccccchHH
Confidence            4589999999999999998888875   899998654

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.36  E-value=0.37  Score=40.38  Aligned_cols=22  Identities=32%  Similarity=0.468  Sum_probs=19.9

Q ss_pred             CCCeEEEEcCchHHHHHHHHHH
Q 011351           50 ENREFVIVGGGNAAGYAARTFV   71 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~   71 (488)
                      ..++|||||+|-.++=+|..|.
T Consensus        38 ~gk~VvVIGgGNvAlD~AR~ll   59 (216)
T d1lqta1          38 SGARAVVIGNGNVALDVARILL   59 (216)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHH
T ss_pred             cCceEEEECCCchhHhhhhhhc
Confidence            4589999999999999999887

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=87.27  E-value=0.73  Score=39.98  Aligned_cols=58  Identities=24%  Similarity=0.426  Sum_probs=42.3

Q ss_pred             CCeEEEECC-CHHHHHHHHHHHhCCCcEEEEecCCcCcccccCHHHHHHHHHHHHHcCcEEEc
Q 011351          207 AKKVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVK  268 (488)
Q Consensus       207 ~~~vvVvG~-G~~g~e~A~~l~~~g~~v~lv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~v~~  268 (488)
                      .|+|+|.|+ |++|-.++..|.+.|.+|+.+.|.+....   .+..... ...+...+++++.
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~---~~~~~~~-~~~~~~~~~~~~~   61 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASS---NSEKAQL-LESFKASGANIVH   61 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTT---THHHHHH-HHHHHTTTCEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcccc---chhHHHH-HHhhccCCcEEEE
Confidence            478999986 99999999999999999999998765443   2222222 3445666777654

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=86.95  E-value=0.31  Score=39.26  Aligned_cols=36  Identities=17%  Similarity=0.161  Sum_probs=29.6

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      ...+|+|+|+|+.|+.++..++..|..  +|+++|.++
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~--~Vi~~d~~~   62 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAG--RIIGVGSRP   62 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCS--CEEEECCCH
T ss_pred             CCCEEEEEcCCcchhhhhhhhhccccc--ccccccchh
Confidence            356899999999999999998888752  688888653

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=86.77  E-value=0.23  Score=40.55  Aligned_cols=32  Identities=19%  Similarity=0.291  Sum_probs=28.7

Q ss_pred             eEEEE-cCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           53 EFVIV-GGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        53 ~vvII-GgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      ||.|| |+|.-|.+.|..|++.|+   +|++.++++
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~---~V~l~~R~~   34 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGH---EIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTC---EEEEEESSH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCC---EEEEEECCH
Confidence            68999 669999999999999998   899998775

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=86.67  E-value=0.41  Score=40.02  Aligned_cols=37  Identities=19%  Similarity=0.299  Sum_probs=32.4

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      ....+||+.|+|.||+..|..|.+.+.+  ++.++|+.-
T Consensus        24 l~d~riv~~GAGsAg~gia~~l~~~~~~--~i~~~D~~G   60 (222)
T d1vl6a1          24 IEEVKVVVNGIGAAGYNIVKFLLDLGVK--NVVAVDRKG   60 (222)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHHTCC--EEEEEETTE
T ss_pred             hhhcEEEEEChHHHHHHHHHHHHHhccc--ceEeeccee
Confidence            4567999999999999999999998865  899999864

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=86.33  E-value=0.28  Score=39.49  Aligned_cols=35  Identities=14%  Similarity=0.327  Sum_probs=29.5

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~   86 (488)
                      ...++|+|+|+|-++-+++..|.+.+   .+|+|+.+.
T Consensus        16 ~~~k~vlIlGaGGaarai~~aL~~~~---~~i~I~nR~   50 (171)
T d1p77a1          16 RPNQHVLILGAGGATKGVLLPLLQAQ---QNIVLANRT   50 (171)
T ss_dssp             CTTCEEEEECCSHHHHTTHHHHHHTT---CEEEEEESS
T ss_pred             CCCCEEEEECCcHHHHHHHHHHcccC---ceeeeccch
Confidence            45689999999999999999998754   389998766

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=85.82  E-value=0.64  Score=37.12  Aligned_cols=35  Identities=14%  Similarity=0.189  Sum_probs=31.5

Q ss_pred             hcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 011351          205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  239 (488)
Q Consensus       205 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~  239 (488)
                      ..+|+++|+|+|-++--++..|.+.|.+++++.|.
T Consensus        16 ~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt   50 (170)
T d1nyta1          16 RPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRT   50 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCCEEEEECCcHHHHHHHHHhcccceEEEeccch
Confidence            36799999999999999999999999998888775

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=85.74  E-value=0.49  Score=38.05  Aligned_cols=35  Identities=14%  Similarity=0.102  Sum_probs=28.8

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~   86 (488)
                      ....|+|+|+|+-|+.++..++..|..  +|++.|.+
T Consensus        28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga~--~Vi~~d~~   62 (174)
T d1e3ia2          28 PGSTCAVFGLGCVGLSAIIGCKIAGAS--RIIAIDIN   62 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCS--EEEEECSC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCc--eeeeeccc
Confidence            346899999999999999999998852  67777754

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.45  E-value=0.4  Score=40.48  Aligned_cols=36  Identities=28%  Similarity=0.343  Sum_probs=30.6

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHc--------------------CCCCCcEEEEcCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEH--------------------GMADGRLCIVSKEA   87 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~--------------------g~~~~~V~lie~~~   87 (488)
                      ..++|+|||+|-.++=+|..|.+.                    +.  .+|+++.+..
T Consensus        38 ~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~--~~V~iv~RRg   93 (225)
T d1cjca1          38 SCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRV--KTVWIVGRRG   93 (225)
T ss_dssp             TSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCC--CEEEEECSSC
T ss_pred             cCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCC--CeEEEEEEcC
Confidence            468999999999999999999883                    43  3899998875

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.40  E-value=0.56  Score=37.04  Aligned_cols=35  Identities=29%  Similarity=0.266  Sum_probs=32.3

Q ss_pred             hcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 011351          205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  239 (488)
Q Consensus       205 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~  239 (488)
                      ..+|+++|+|-|.+|-.+|..++..|.+|++.+..
T Consensus        22 l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~d   56 (163)
T d1li4a1          22 IAGKVAVVAGYGDVGKGCAQALRGFGARVIITEID   56 (163)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             ecCCEEEEeccccccHHHHHHHHhCCCeeEeeecc
Confidence            47899999999999999999999999999998664

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=85.39  E-value=0.32  Score=39.50  Aligned_cols=35  Identities=14%  Similarity=0.263  Sum_probs=29.5

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      ..+|+|+|+|+.|+.++..++..|..  +|++++.++
T Consensus        29 G~~VlV~GaG~iG~~~~~~ak~~Ga~--~Vi~~~~~~   63 (182)
T d1vj0a2          29 GKTVVIQGAGPLGLFGVVIARSLGAE--NVIVIAGSP   63 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBS--EEEEEESCH
T ss_pred             CCEEEEECCCccchhheecccccccc--ccccccccc
Confidence            46899999999999999999888752  689988654

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=85.32  E-value=0.52  Score=36.80  Aligned_cols=35  Identities=26%  Similarity=0.256  Sum_probs=31.3

Q ss_pred             cCCeEEEEC-CCHHHHHHHHHHHhCCCcEEEEecCC
Q 011351          206 KAKKVVVVG-GGYIGMEVAAAAVGWKLDTTIIFPEN  240 (488)
Q Consensus       206 ~~~~vvVvG-~G~~g~e~A~~l~~~g~~v~lv~~~~  240 (488)
                      .-++|.||| .|..|.-+|..|.+.|.+|+++.+..
T Consensus         8 ~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~   43 (152)
T d2pv7a2           8 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDRED   43 (152)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence            347999999 69999999999999999999998764

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=84.92  E-value=0.67  Score=36.75  Aligned_cols=34  Identities=41%  Similarity=0.581  Sum_probs=31.0

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  239 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~  239 (488)
                      ++-+++|+|+|..|.+.+..+..+|.+|++++.+
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~   64 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDIN   64 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCc
Confidence            3568999999999999999999999999999765

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.75  E-value=0.47  Score=37.63  Aligned_cols=33  Identities=15%  Similarity=0.273  Sum_probs=29.6

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~   86 (488)
                      +++|-|||-|.-|...|..|.+.|+   +|+++|++
T Consensus         1 M~kIg~IGlG~MG~~iA~~L~~~g~---~v~~~d~~   33 (162)
T d3cuma2           1 MKQIAFIGLGHMGAPMATNLLKAGY---LLNVFDLV   33 (162)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTC---EEEEECSS
T ss_pred             CCEEEEEEEHHHHHHHHHHHHHCCC---eEEEEECc
Confidence            3579999999999999999999988   89998865

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.60  E-value=1.3  Score=34.86  Aligned_cols=32  Identities=16%  Similarity=0.161  Sum_probs=29.8

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  239 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~  239 (488)
                      ++|.+||-|..|..+|..|.+.|.+|+++.+.
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~   33 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLV   33 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSS
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECc
Confidence            57999999999999999999999999998876

>d1nhpa3 d.87.1.1 (A:322-447) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=84.33  E-value=0.1  Score=39.78  Aligned_cols=61  Identities=8%  Similarity=0.011  Sum_probs=39.7

Q ss_pred             cEEEEEEE--CCEEEEEEeecCC-hHHhhH-HHHHHhcCCCCC-hhhh--cCCCcHHHH---HHHHHccCC
Q 011351          423 KIATFWID--SGKLKGVLVESGS-PEEFQL-LPTLARSQPFVD-KAKL--QQASSVEEA---LEIARAALP  483 (488)
Q Consensus       423 ~~~~~~~~--~~~~~g~~~~~~~-~~~~~~-~~~~~~~~~~~~-~~~~--~~~~~~~~~---~~~~~~~~~  483 (488)
                      .+.|+.++  +++|+|+++++.+ +.++.. +..+|+.+.+++ ...+  ..||++.|+   +..|+..++
T Consensus        52 g~~Kli~d~~t~~IlG~~ivG~~~a~e~I~~~~~ai~~~~t~~dL~~~~~~yhPt~se~~~~l~~aA~~a~  122 (126)
T d1nhpa3          52 AWFKLVYDPETTQILGAQLMSKADLTANINAISLAIQAKMTIEDLAYADFFFQPAFDKPWNIINTAALEAV  122 (126)
T ss_dssp             EEEEEEECTTTCBEEEEEEEESSCCTTHHHHHHHHHHTTCBHHHHHTCCCCCCTTTCCSSCHHHHHHHHHH
T ss_pred             eeEEEEEECCCCCEEEEEEEechhHHHHHHHHHHHHHcCCCHHHHhcCcccCCCCCchhHHHHHHHHHHHH
Confidence            35676664  4899999987644 666554 455688888886 3333  346888886   555555443

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=84.19  E-value=0.63  Score=37.41  Aligned_cols=35  Identities=14%  Similarity=0.126  Sum_probs=29.8

Q ss_pred             CCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      ...|+|+|+|.-|+.++..++..|.  .+|+.+|.++
T Consensus        30 g~tVlI~G~GgvGl~ai~~ak~~G~--~~Vi~vd~~~   64 (176)
T d1d1ta2          30 GSTCVVFGLGGVGLSVIMGCKSAGA--SRIIGIDLNK   64 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC--SEEEEECSCG
T ss_pred             CCEEEEECCCchhHHHHHHHHHcCC--ceEEEecCcH
Confidence            4579999999999999999999885  3799998654

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=83.82  E-value=0.42  Score=38.55  Aligned_cols=34  Identities=24%  Similarity=0.400  Sum_probs=27.7

Q ss_pred             CCCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351           49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (488)
Q Consensus        49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~   86 (488)
                      -+.++|+|||+|-++-+++..|.+.+    +|+|+.+.
T Consensus        16 ~~~k~vlIlGaGG~arai~~aL~~~~----~i~I~nR~   49 (177)
T d1nvta1          16 VKDKNIVIYGAGGAARAVAFELAKDN----NIIIANRT   49 (177)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHTSSS----EEEEECSS
T ss_pred             cCCCEEEEECCcHHHHHHHHHHcccc----ceeeehhh
Confidence            35689999999999999999986543    79988765

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=83.80  E-value=0.54  Score=38.58  Aligned_cols=35  Identities=14%  Similarity=0.093  Sum_probs=28.6

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~   86 (488)
                      ...+|+|+|+|+.|+.++..++..|.  .+|+++|..
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~ga--~~Vi~~d~~   59 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLGA--AVVIVGDLN   59 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC--SEEEEEESC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhcc--cceeeeccc
Confidence            35689999999999999998888774  378888754

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=83.67  E-value=0.62  Score=37.04  Aligned_cols=34  Identities=12%  Similarity=0.186  Sum_probs=27.8

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~   86 (488)
                      ...+|+|+|+|..|+.++.-++..|.   ++++++..
T Consensus        30 ~G~~VlI~GaG~vG~~a~qlak~~Ga---~~i~~~~~   63 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLAHAMGA---HVVAFTTS   63 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESS
T ss_pred             CCCEEEEeccchHHHHHHHHhhcccc---cchhhccc
Confidence            35689999999999999988888876   67777754

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=83.57  E-value=0.7  Score=37.17  Aligned_cols=36  Identities=19%  Similarity=0.159  Sum_probs=32.2

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  241 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~~  241 (488)
                      ++-+|+|+|+|..|...+.....+|..|++++.+..
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~   63 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA   63 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHH
Confidence            356899999999999999999999999999987653

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=83.29  E-value=0.58  Score=43.08  Aligned_cols=34  Identities=24%  Similarity=0.310  Sum_probs=30.6

Q ss_pred             eEEEECCCHHHHHHHHHHHhCC-CcEEEEecCCcC
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHL  242 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g-~~v~lv~~~~~~  242 (488)
                      .++|||+|..|+-+|..|++.+ .+|.|+++++..
T Consensus        26 D~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~~   60 (391)
T d1gpea1          26 DYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE   60 (391)
T ss_dssp             EEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCCC
Confidence            4899999999999999999988 699999999653

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=82.91  E-value=0.72  Score=36.98  Aligned_cols=35  Identities=17%  Similarity=0.128  Sum_probs=29.2

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~   86 (488)
                      ....|+|+|+|+.|+.++..++..|..  +|+++|.+
T Consensus        27 ~G~~VlV~GaGgvGl~a~~~ak~~G~~--~Vi~~d~~   61 (174)
T d1p0fa2          27 PGSTCAVFGLGGVGFSAIVGCKAAGAS--RIIGVGTH   61 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCS--EEEEECSC
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCCc--eeeccCCh
Confidence            346899999999999999999998852  68888754

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=82.89  E-value=0.55  Score=37.22  Aligned_cols=35  Identities=17%  Similarity=0.128  Sum_probs=28.7

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      ...+|+|+|+|+.|+.++..++..|.   +|++++.++
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~---~v~~~~~~~   61 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGL---NVVAVDIGD   61 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTC---EEEEECSCH
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCC---eEeccCCCH
Confidence            35689999999999999888888776   788887543

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=82.77  E-value=0.77  Score=36.64  Aligned_cols=36  Identities=17%  Similarity=0.135  Sum_probs=28.9

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      ....|+|+|+|..|+.++..++..+.  .+|+.++..+
T Consensus        28 ~g~~VlI~G~Gg~g~~~~~~~~~~g~--~~Vi~~~~~~   63 (175)
T d1cdoa2          28 PGSTCAVFGLGAVGLAAVMGCHSAGA--KRIIAVDLNP   63 (175)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC--SEEEEECSCG
T ss_pred             CCCEEEEEecCCccchHHHHHHHHhh--chheeecchH
Confidence            34579999999999999999998874  3688887553

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=82.65  E-value=0.42  Score=39.10  Aligned_cols=32  Identities=22%  Similarity=0.242  Sum_probs=29.1

Q ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 011351          208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  239 (488)
Q Consensus       208 ~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~  239 (488)
                      ++|+|+|+|.-|.-+|..|.+.|.+|++..|.
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~   39 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMN   39 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEEEECSC
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEEec
Confidence            57999999999999999999999999998654

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=82.63  E-value=0.62  Score=37.35  Aligned_cols=35  Identities=20%  Similarity=0.115  Sum_probs=27.6

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~   86 (488)
                      ...+|+|+|+|+.|+.++.-++..|..  .|++.+..
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~--~v~~~~~~   62 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKVCGAS--IIIAVDIV   62 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCS--EEEEEESC
T ss_pred             CCCEEEEeCCCHHHhhhhhcccccccc--eeeeeccH
Confidence            356899999999999999999888762  55666643

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=82.55  E-value=0.7  Score=36.04  Aligned_cols=31  Identities=16%  Similarity=0.201  Sum_probs=27.4

Q ss_pred             eEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351           53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE   86 (488)
Q Consensus        53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~   86 (488)
                      ||-|||-|.-|...|..|++.|+   ++++.++.
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~---~v~~~~~~   32 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGV---EVVTSLEG   32 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTC---EEEECCTT
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCC---eEEEEcCc
Confidence            69999999999999999999987   78777644

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=82.29  E-value=0.69  Score=36.51  Aligned_cols=34  Identities=29%  Similarity=0.381  Sum_probs=29.9

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCC-cEEEEecC
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPE  239 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~-~v~lv~~~  239 (488)
                      ..++++|||+|.+|..++..|...|. +++++.|.
T Consensus        23 ~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt   57 (159)
T d1gpja2          23 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT   57 (159)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred             ccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc
Confidence            57899999999999999999999987 57777665

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=82.26  E-value=0.74  Score=36.39  Aligned_cols=31  Identities=26%  Similarity=0.176  Sum_probs=28.2

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  239 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~  239 (488)
                      +|.|||.|..|.-+|..|.+.|.+|+.+.|.
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~   32 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQ   32 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECC
Confidence            5899999999999999999999999988664

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=82.23  E-value=0.84  Score=36.55  Aligned_cols=36  Identities=25%  Similarity=0.186  Sum_probs=30.1

Q ss_pred             hhcCCeEEEECCCHHHHHHHHHHHhCCC-cEEEEecC
Q 011351          204 LEKAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPE  239 (488)
Q Consensus       204 ~~~~~~vvVvG~G~~g~e~A~~l~~~g~-~v~lv~~~  239 (488)
                      .+++++|+|+|+|.+|.-.+..++..|. +|..+.+.
T Consensus        25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~   61 (174)
T d1jqba2          25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSR   61 (174)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCC
T ss_pred             CCCCCEEEEEcCCcchhhhhhhhhcccccccccccch
Confidence            4678999999999999999999999997 57666543

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=82.21  E-value=0.73  Score=37.23  Aligned_cols=32  Identities=16%  Similarity=0.236  Sum_probs=28.6

Q ss_pred             eEEEE-CCCHHHHHHHHHHHhCCCcEEEEecCC
Q 011351          209 KVVVV-GGGYIGMEVAAAAVGWKLDTTIIFPEN  240 (488)
Q Consensus       209 ~vvVv-G~G~~g~e~A~~l~~~g~~v~lv~~~~  240 (488)
                      +|.|+ |+|..|..+|..|++.|.+|++..|.+
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            57899 679999999999999999999998764

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.20  E-value=1.2  Score=34.45  Aligned_cols=37  Identities=16%  Similarity=0.240  Sum_probs=30.6

Q ss_pred             CCeEEEEcC-chHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           51 NREFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        51 ~~~vvIIGg-G~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      +.+|.|||| |..|.....-|.++.+|..++..+..+.
T Consensus         2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~   39 (144)
T d2hjsa1           2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAE   39 (144)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecc
Confidence            468999998 9999999999987777777888876554

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.90  E-value=0.74  Score=36.58  Aligned_cols=37  Identities=27%  Similarity=0.203  Sum_probs=32.5

Q ss_pred             hhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 011351          204 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  240 (488)
Q Consensus       204 ~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~  240 (488)
                      ...+++++|+|+|.+|.-.+..++..|.+|..+.+++
T Consensus        25 ~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~   61 (168)
T d1piwa2          25 CGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSS   61 (168)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSS
T ss_pred             cCCCCEEEEECCCCcchhHHHHhhhccccccccccch
Confidence            4578999999999999999998889999998887765

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=81.48  E-value=0.95  Score=36.79  Aligned_cols=35  Identities=31%  Similarity=0.326  Sum_probs=31.8

Q ss_pred             cCCeEEEEC-CCHHHHHHHHHHHhCCCcEEEEecCC
Q 011351          206 KAKKVVVVG-GGYIGMEVAAAAVGWKLDTTIIFPEN  240 (488)
Q Consensus       206 ~~~~vvVvG-~G~~g~e~A~~l~~~g~~v~lv~~~~  240 (488)
                      .+|+++|.| +|-+|.++|..|.+.|.+|+++.|..
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~   57 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL   57 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence            689999998 69999999999999999999988764

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.08  E-value=0.83  Score=37.60  Aligned_cols=32  Identities=16%  Similarity=0.255  Sum_probs=29.1

Q ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 011351          209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  240 (488)
Q Consensus       209 ~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~  240 (488)
                      +|.|||.|..|+-+|..|++.|.+|+.++...
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~   33 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence            58999999999999999999999999887653

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=80.65  E-value=0.99  Score=36.68  Aligned_cols=37  Identities=11%  Similarity=0.255  Sum_probs=31.5

Q ss_pred             CCCCCeEEEEc-CchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           48 ANENREFVIVG-GGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        48 ~~~~~~vvIIG-gG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      .-+.++++|.| +|-.|..+|+.|.+.|.   +|++++++.
T Consensus        20 ~l~gK~vlItGasgGIG~~ia~~la~~G~---~V~~~~r~~   57 (191)
T d1luaa1          20 SVKGKKAVVLAGTGPVGMRSAALLAGEGA---EVVLCGRKL   57 (191)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhhcc---chhhcccch
Confidence            44678999999 57889999999999987   899998764

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=80.52  E-value=1.1  Score=36.23  Aligned_cols=35  Identities=23%  Similarity=0.223  Sum_probs=31.6

Q ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Q 011351          206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  240 (488)
Q Consensus       206 ~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~~  240 (488)
                      .++++.|+|.|.+|-++|..+...|.+|..+.+.+
T Consensus        41 ~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~   75 (181)
T d1qp8a1          41 QGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTP   75 (181)
T ss_dssp             TTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cCceEEEeccccccccceeeeeccccccccccccc
Confidence            47899999999999999999999999999887653

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=80.48  E-value=1  Score=35.61  Aligned_cols=36  Identities=22%  Similarity=0.279  Sum_probs=31.6

Q ss_pred             hhcCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Q 011351          204 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  239 (488)
Q Consensus       204 ~~~~~~vvVvG~G~~g~e~A~~l~~~g~~v~lv~~~  239 (488)
                      .+.+++++|+|+|.+|.-++..++..|.+|..+.+.
T Consensus        24 ~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~   59 (170)
T d1e3ja2          24 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARS   59 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEEcccccchhhHhhHhhhcccccccchH
Confidence            356889999999999999999999999998888654

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=80.38  E-value=0.92  Score=36.13  Aligned_cols=36  Identities=17%  Similarity=0.112  Sum_probs=28.7

Q ss_pred             CCCeEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011351           50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA   87 (488)
Q Consensus        50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~   87 (488)
                      ....|+|+|+|+.|+.++..++..|..  .|++++.++
T Consensus        32 ~g~~vli~GaG~vG~~~~~~a~~~g~~--~vv~~~~~~   67 (172)
T d1h2ba2          32 PGAYVAIVGVGGLGHIAVQLLKVMTPA--TVIALDVKE   67 (172)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCC--EEEEEESSH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHhhcCc--ccccccchh
Confidence            346899999999999999999888752  677777553

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=80.11  E-value=0.96  Score=40.61  Aligned_cols=34  Identities=15%  Similarity=0.267  Sum_probs=30.1

Q ss_pred             CCCeEEEEcC-chHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011351           50 ENREFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKE   86 (488)
Q Consensus        50 ~~~~vvIIGg-G~AGl~aA~~L~~~g~~~~~V~lie~~   86 (488)
                      ++++|+|+|| |.-|-+.+..|.+.|+   +|+++.++
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~---~V~~l~R~   36 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGH---HVRAQVHS   36 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTC---CEEEEESC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCC---eEEEEECC
Confidence            4789999996 9999999999999987   79888765