Citrus Sinensis ID: 011371

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------
MPSNGALEDTKVPLLDDLASTVPSEDDSDKNLTRTIWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLGVYMQRSWIVLFVCCVLLLPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGGCPLTWTGFTLEAFSGLWQFVKLSAASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIGVPLGCLMGWVFHQGVMGIWAGMIFGGTAIQTLILAIITIRCDWDKEAETANTRVRKWAETA
cccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHEEEcccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccHHHEEEHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcc
cccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccHHHHcHHHccccHHHHHHHEEHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccc
mpsngaledtkvpllddlastvpseddsdknltRTIWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLGVYMQRSWIVLFVCCVLLLplylfaspvlkllgqpddvaelSGMVSIWMIplhfsfafqfpLQRFLQSQLKNMVIAWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFgyvscggcpltwtgfTLEAFSGLWQFVKLSAASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVAnelgagngkgakFATIVSVVTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIGVPLGCLMGWVFHQGVMGIWAGMIFGGTAIQTLILAIITIRCDWDKEAETANTRVRKWAETA
mpsngaledtkvpllddlastvpseddsdknltrtiwveskklwYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLGVYMQRSWIVLFVCCVLLLPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGGCPLTWTGFTLEAFSGLWQFVKLSAASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIGVPLGCLMGWVFHQGVMGIWAGMIFGGTAIQTLILAIITIRCDWDKEAETANTRvrkwaeta
MPSNGALEDTKVPLLDDLASTVPSEDDSDKNLTRTIWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLGVYMQRSWIvlfvccvlllplylfASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGGCPLTWTGFTLEAFSGLWQFVKLSAASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFAtivsvvtsviiGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIGVPLGCLMGWVFHQGVMGIWAGMIFGGtaiqtlilaiitiRCDWDKEAETANTRVRKWAETA
*******************************LTRTIWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLGVYMQRSWIVLFVCCVLLLPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGGCPLTWTGFTLEAFSGLWQFVKLSAASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIGVPLGCLMGWVFHQGVMGIWAGMIFGGTAIQTLILAIITIRCDWDKEA**************
*********************************RTIWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLGVYMQRSWIVLFVCCVLLLPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGGCPLTWTGFTLEAFSGLWQFVKLSAASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIGVPLGCLMGWVFHQGVMGIWAGMIFGGTAIQTLILAIITIRCDWDKEAETA***********
MPSNGALEDTKVPLLDDLAST*********NLTRTIWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLGVYMQRSWIVLFVCCVLLLPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGGCPLTWTGFTLEAFSGLWQFVKLSAASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIGVPLGCLMGWVFHQGVMGIWAGMIFGGTAIQTLILAIITIRCDWDKEAETANTRVRKWAETA
*****************************KNLTRTIWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLGVYMQRSWIVLFVCCVLLLPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGGCPLTWTGFTLEAFSGLWQFVKLSAASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIGVPLGCLMGWVFHQGVMGIWAGMIFGGTAIQTLILAIITIRCDWDKEAETANTRVRKW****
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
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MPSNGALEDTKVPLLDDLASTVPSEDDSDKNLTRTIWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLGVYMQRSWIVLFVCCVLLLPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGGCPLTWTGFTLEAFSGLWQFVKLSAASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIGVPLGCLMGWVFHQGVMGIWAGMIFGGTAIQTLILAIITIRCDWDKEAETANTRVRKWAETA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query487 2.2.26 [Sep-21-2011]
Q9LYT3507 Protein TRANSPARENT TESTA no no 0.987 0.948 0.407 2e-98
Q9LUH3469 MATE efflux family protei no no 0.936 0.972 0.356 1e-66
Q9LUH2477 MATE efflux family protei no no 0.940 0.960 0.351 5e-66
Q9SIA5476 MATE efflux family protei no no 0.946 0.968 0.333 3e-63
Q8GXM8476 MATE efflux family protei no no 0.907 0.928 0.326 9e-63
Q9SIA4476 MATE efflux family protei no no 0.952 0.974 0.334 2e-62
Q9SIA3476 MATE efflux family protei no no 0.907 0.928 0.328 3e-62
Q9SIA1477 MATE efflux family protei no no 0.915 0.935 0.326 3e-57
Q8RWF5483 MATE efflux family protei no no 0.889 0.896 0.330 5e-57
A1L1P9590 Multidrug and toxin extru no no 0.950 0.784 0.297 2e-47
>sp|Q9LYT3|TT12_ARATH Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1 Back     alignment and function desciption
 Score =  360 bits (924), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 198/486 (40%), Positives = 300/486 (61%), Gaps = 5/486 (1%)

Query: 1   MPSNGALEDTKVPLLDDLASTVPSEDDSDKNLTRTIWVESKKLWYIVGPAIFSRLASYSM 60
           + S+  + +   P +++      S       L   +W ESK LW + G +I   + +Y +
Sbjct: 14  LHSDSQITERSSPEIEEFLRRRGSTVTPRWWLKLAVW-ESKLLWTLSGASIVVSVLNYML 72

Query: 61  LVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLGVY 120
             +T  F GHLG ++LA  SIA   I G  +G++LGMASA++T+CGQA+GA++Y  +G+ 
Sbjct: 73  SFVTVMFTGHLGSLQLAGASIATVGIQGLAYGIMLGMASAVQTVCGQAYGARQYSSMGII 132

Query: 121 MQRSWIVLFVCCVLLLPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQ 180
            QR+ ++     V L  LY ++ P+LK +GQ   +A    + +  MIP  ++FA   P+Q
Sbjct: 133 CQRAMVLHLAAAVFLTFLYWYSGPILKTMGQSVAIAHEGQIFARGMIPQIYAFALACPMQ 192

Query: 181 RFLQSQLKNMVIAWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVF--GLFG 238
           RFLQ+Q     +A++SL   L+H  ++WL  N +  G++G A  L+FSWW+LV   G++ 
Sbjct: 193 RFLQAQNIVNPLAYMSLGVFLLHTLLTWLVTNVLDFGLLGAALILSFSWWLLVAVNGMYI 252

Query: 239 YVSCGGCPLTWTGFTLEAFSGLWQFVKLSAASGVMLCLENWYYRILISMTGNLQNAEIAV 298
            +S   C  TWTGF+  AF G+W + KL+ AS VMLCLE WY + L+ ++G L N  I++
Sbjct: 253 LMS-PNCKETWTGFSTRAFRGIWPYFKLTVASAVMLCLEIWYNQGLVIISGLLSNPTISL 311

Query: 299 DALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVIIGLFFWL 358
           DA+SICM    W+M   L   A   VRV+NELGAGN + A  + +V  +T+V+I     +
Sbjct: 312 DAISICMYYLNWDMQFMLGLSAAISVRVSNELGAGNPRVAMLSVVVVNITTVLISSVLCV 371

Query: 359 LIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYIN 418
           +++++   L+  F+S   V+ AV+ L  LLA +I LN +QPILSGVA+GSGWQ+ VAY+N
Sbjct: 372 IVLVFRVGLSKAFTSDAEVIAAVSDLFPLLAVSIFLNGIQPILSGVAIGSGWQAVVAYVN 431

Query: 419 LGCYYLIGVPLGCLMGWVFHQGVMGIWAGMIFGGTAIQTLILAIITIRCDWDKEAETANT 478
           L  YY+IG+P+GC++G+    GV GIW GMI  G  +QTL L ++T++ +W  E E A  
Sbjct: 432 LVTYYVIGLPIGCVLGFKTSLGVAGIWWGMI-AGVILQTLTLIVLTLKTNWTSEVENAAQ 490

Query: 479 RVRKWA 484
           RV+  A
Sbjct: 491 RVKTSA 496
May be involved in vacuolar transport of flavonoids.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9LUH2|ALF5_ARATH MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1 Back     alignment and function description
>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA4|MATE5_ARATH MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1 Back     alignment and function description
>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2 Back     alignment and function description
>sp|Q9SIA1|MATE8_ARATH MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2 Back     alignment and function description
>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1 Back     alignment and function description
>sp|A1L1P9|S47A1_DANRE Multidrug and toxin extrusion protein 1 OS=Danio rerio GN=slc47a1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query487
224097194488 predicted protein [Populus trichocarpa] 0.991 0.989 0.831 0.0
356497726491 PREDICTED: protein TRANSPARENT TESTA 12- 0.991 0.983 0.784 0.0
255586693482 multidrug resistance pump, putative [Ric 0.985 0.995 0.822 0.0
357485623490 Protein TRANSPARENT TESTA [Medicago trun 0.985 0.979 0.790 0.0
255586695507 multidrug resistance pump, putative [Ric 0.979 0.940 0.759 0.0
297797567486 hypothetical protein ARALYDRAFT_496771 [ 0.960 0.962 0.771 0.0
302142014521 unnamed protein product [Vitis vinifera] 0.989 0.925 0.733 0.0
359492469490 PREDICTED: protein TRANSPARENT TESTA 12- 0.989 0.983 0.733 0.0
449438809484 PREDICTED: protein TRANSPARENT TESTA 12- 0.983 0.989 0.741 0.0
15238439486 mate efflux domain-containing protein [A 0.975 0.977 0.747 0.0
>gi|224097194|ref|XP_002310871.1| predicted protein [Populus trichocarpa] gi|222853774|gb|EEE91321.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  820 bits (2118), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/488 (83%), Positives = 440/488 (90%), Gaps = 5/488 (1%)

Query: 1   MPSNGALED---TKVPLLDDLASTVPSEDDSDKNLTRTIWVESKKLWYIVGPAIFSRLAS 57
           M SNGA+ D    KVPLL++   T   +D   ++L   + VESKKLW+IVGPAIFSRL S
Sbjct: 1   MSSNGAVLDYLEAKVPLLEE--KTKRDDDIVVQDLACRVGVESKKLWHIVGPAIFSRLTS 58

Query: 58  YSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYML 117
           YSMLVITQAFAGHLGD+ELA ISIANNVIVGFDFGLLLGMASALETLCGQAFGAK+YYML
Sbjct: 59  YSMLVITQAFAGHLGDLELAGISIANNVIVGFDFGLLLGMASALETLCGQAFGAKKYYML 118

Query: 118 GVYMQRSWIVLFVCCVLLLPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQF 177
           GVYMQRSWIVLF+CC+LLLPLYLFASPVLKLLGQP+D+AELSG  ++WMIPLHFSFAFQF
Sbjct: 119 GVYMQRSWIVLFLCCILLLPLYLFASPVLKLLGQPNDIAELSGKAAVWMIPLHFSFAFQF 178

Query: 178 PLQRFLQSQLKNMVIAWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLF 237
           PLQRFLQSQLKNMVIAWVS VAL+VHIFVSWL V ++QLGV GTA TLNFSWW+LVFGL 
Sbjct: 179 PLQRFLQSQLKNMVIAWVSFVALVVHIFVSWLLVYKLQLGVAGTAMTLNFSWWVLVFGLL 238

Query: 238 GYVSCGGCPLTWTGFTLEAFSGLWQFVKLSAASGVMLCLENWYYRILISMTGNLQNAEIA 297
           GY  CGGCPLTWTGF+ EAFSGLW+F KLSAASGVMLCLENWYYRILI MTGNL+NAEIA
Sbjct: 239 GYTICGGCPLTWTGFSTEAFSGLWEFTKLSAASGVMLCLENWYYRILILMTGNLKNAEIA 298

Query: 298 VDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVIIGLFFW 357
           VDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSV TSVIIGL FW
Sbjct: 299 VDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVTTSVIIGLVFW 358

Query: 358 LLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYI 417
           LLIM +H++L  IF+SSE VL+AVNKLSILLAFT+LLNSVQP+LSGVAVGSGWQ YVAYI
Sbjct: 359 LLIMFFHDKLTWIFTSSEPVLEAVNKLSILLAFTVLLNSVQPVLSGVAVGSGWQKYVAYI 418

Query: 418 NLGCYYLIGVPLGCLMGWVFHQGVMGIWAGMIFGGTAIQTLILAIITIRCDWDKEAETAN 477
           NLGCYY IGVPLG LMGW FHQGVMGIWAGMIFGGTA+QTLILAIITIRCDW+KEAE A+
Sbjct: 419 NLGCYYAIGVPLGFLMGWFFHQGVMGIWAGMIFGGTAVQTLILAIITIRCDWEKEAEKAS 478

Query: 478 TRVRKWAE 485
             V KW+E
Sbjct: 479 QHVLKWSE 486

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356497726|ref|XP_003517710.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Glycine max] Back     alignment and taxonomy information
>gi|255586693|ref|XP_002533972.1| multidrug resistance pump, putative [Ricinus communis] gi|223526044|gb|EEF28410.1| multidrug resistance pump, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357485623|ref|XP_003613099.1| Protein TRANSPARENT TESTA [Medicago truncatula] gi|355514434|gb|AES96057.1| Protein TRANSPARENT TESTA [Medicago truncatula] Back     alignment and taxonomy information
>gi|255586695|ref|XP_002533973.1| multidrug resistance pump, putative [Ricinus communis] gi|223526045|gb|EEF28411.1| multidrug resistance pump, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297797567|ref|XP_002866668.1| hypothetical protein ARALYDRAFT_496771 [Arabidopsis lyrata subsp. lyrata] gi|297312503|gb|EFH42927.1| hypothetical protein ARALYDRAFT_496771 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|302142014|emb|CBI19217.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359492469|ref|XP_002285728.2| PREDICTED: protein TRANSPARENT TESTA 12-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449438809|ref|XP_004137180.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Cucumis sativus] gi|449476480|ref|XP_004154748.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|15238439|ref|NP_201341.1| mate efflux domain-containing protein [Arabidopsis thaliana] gi|14030731|gb|AAK53040.1|AF375456_1 AT5g65380/MNA5_11 [Arabidopsis thaliana] gi|9759618|dbj|BAB11560.1| unnamed protein product [Arabidopsis thaliana] gi|23506079|gb|AAN28899.1| At5g65380/MNA5_11 [Arabidopsis thaliana] gi|332010662|gb|AED98045.1| mate efflux domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query487
TAIR|locus:2168210486 AT5G65380 "AT5G65380" [Arabido 0.960 0.962 0.699 4.5e-178
TAIR|locus:2142544489 AT5G10420 [Arabidopsis thalian 0.971 0.967 0.633 1.1e-165
TAIR|locus:2172477491 AT5G44050 "AT5G44050" [Arabido 0.981 0.973 0.620 3.9e-163
TAIR|locus:2206960494 AT1G33110 "AT1G33110" [Arabido 0.940 0.927 0.466 3e-117
TAIR|locus:2037980494 AT1G33090 "AT1G33090" [Arabido 0.940 0.927 0.459 3.5e-114
TAIR|locus:2015368484 AT1G47530 "AT1G47530" [Arabido 0.975 0.981 0.445 7.3e-114
TAIR|locus:2037960494 AT1G33080 "AT1G33080" [Arabido 0.944 0.931 0.459 3.2e-113
TAIR|locus:2010401522 RSH2 "AT1G12950" [Arabidopsis 0.928 0.865 0.459 2.6e-111
TAIR|locus:2144421498 AT5G38030 "AT5G38030" [Arabido 0.913 0.893 0.464 2.1e-109
TAIR|locus:2088822500 AT3G26590 "AT3G26590" [Arabido 0.913 0.89 0.455 4.3e-109
TAIR|locus:2168210 AT5G65380 "AT5G65380" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1729 (613.7 bits), Expect = 4.5e-178, P = 4.5e-178
 Identities = 328/469 (69%), Positives = 374/469 (79%)

Query:    18 LASTVPSEDDSDKNLTRTIWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELA 77
             L S   +E+D +  L   I VE+KKLW IVGPAIFSR+ +YSMLVITQAFAGHLGD+ELA
Sbjct:    17 LKSPHTAEEDGE-GLKDRILVETKKLWQIVGPAIFSRVTTYSMLVITQAFAGHLGDLELA 75

Query:    78 AISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLGVYMQRSWIXXXXXXXXXXX 137
             AISI NNV VGF+FGLLLGMASALETLCGQAFGAK+Y+MLGVYMQRSWI           
Sbjct:    76 AISIVNNVTVGFNFGLLLGMASALETLCGQAFGAKKYHMLGVYMQRSWIVLFFCCVLLLP 135

Query:   138 XXXXASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSL 197
                  +PVLK LGQPDD+AELSG+V+IW+IPLHF+F   FPLQRFLQ QLKN V A+ + 
Sbjct:   136 TYIFTTPVLKFLGQPDDIAELSGVVAIWVIPLHFAFTLSFPLQRFLQCQLKNRVTAYAAA 195

Query:   198 VALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGGCPLTWTGFTLEAF 257
             VAL+VHI V WLFV+ ++LGV+GT AT++ SWW+ V  L  Y +CGGCPLTWTG + EA 
Sbjct:   196 VALVVHILVCWLFVDGLKLGVVGTVATISISWWVNVLILLVYSTCGGCPLTWTGLSSEAL 255

Query:   258 SGLWQFVKLSAASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLA 317
             +GLW+F+KLSA+SGVMLCLENWYYRILI MTGNLQNA IAVD+LSICM INGWEMMIPLA
Sbjct:   256 TGLWEFLKLSASSGVMLCLENWYYRILIIMTGNLQNARIAVDSLSICMAINGWEMMIPLA 315

Query:   318 FFAGTGVRVANELGAGNGKGAKFAXXXXXXXXXXXGLFFWLLIMIYHNELALIFSSSEAV 377
             FFAGTGVRVANELGAGNGKGA+FA           GLFFW+LIM+ HN++A IFSSS AV
Sbjct:   316 FFAGTGVRVANELGAGNGKGARFATIVSVTQSLIIGLFFWVLIMLLHNQIAWIFSSSVAV 375

Query:   378 LQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIGVPLGCLMGWVF 437
             L AVNKLS+LLAFT+LLNSVQP+LSGVAVGSGWQSYVAYINLGCYY IGVPLG LMGW F
Sbjct:   376 LDAVNKLSLLLAFTVLLNSVQPVLSGVAVGSGWQSYVAYINLGCYYCIGVPLGFLMGWGF 435

Query:   438 HQGVMGIWAGMIFGGXXXXXXXXXXXXXRCDWDKEAETANTRVRKWAET 486
               GVMGIW GMIFGG             RCDW+KEA+ A+ R+ KW+ T
Sbjct:   436 KLGVMGIWGGMIFGGTAVQTMILSFITMRCDWEKEAQKASARINKWSNT 484
GO:0005215 "transporter activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0006855 "drug transmembrane transport" evidence=IEA
GO:0009835 "fruit ripening" evidence=ISS
GO:0015238 "drug transmembrane transporter activity" evidence=IEA
GO:0015297 "antiporter activity" evidence=IEA;ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0055085 "transmembrane transport" evidence=IEA
TAIR|locus:2142544 AT5G10420 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172477 AT5G44050 "AT5G44050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2206960 AT1G33110 "AT1G33110" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037980 AT1G33090 "AT1G33090" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2015368 AT1G47530 "AT1G47530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037960 AT1G33080 "AT1G33080" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010401 RSH2 "AT1G12950" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144421 AT5G38030 "AT5G38030" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088822 AT3G26590 "AT3G26590" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query487
cd13132436 cd13132, MATE_eukaryotic, Eukaryotic members of th 1e-163
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 3e-49
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 4e-46
cd13131435 cd13131, MATE_NorM_like, Subfamily of the multidru 1e-37
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 2e-33
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 1e-27
pfam01554161 pfam01554, MatE, MatE 5e-27
PRK01766456 PRK01766, PRK01766, multidrug efflux protein; Revi 2e-24
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 3e-24
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 3e-22
pfam01554161 pfam01554, MatE, MatE 1e-21
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 1e-20
cd13143426 cd13143, MATE_MepA_like, Subfamily of the multidru 2e-16
cd13142444 cd13142, MATE_like_12, Uncharacterized subfamily o 3e-14
cd13136424 cd13136, MATE_DinF_like, DinF and similar proteins 2e-13
cd13135429 cd13135, MATE_like_9, Uncharacterized subfamily of 3e-09
PRK00187464 PRK00187, PRK00187, multidrug efflux protein NorA; 2e-07
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 1e-06
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 3e-05
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 4e-05
cd13144434 cd13144, MATE_like_4, Uncharacterized subfamily of 1e-04
cd13149434 cd13149, MATE_like_2, Uncharacterized subfamily of 2e-04
cd13146433 cd13146, MATE_like_6, Uncharacterized subfamily of 3e-04
cd13140435 cd13140, MATE_like_1, Uncharacterized subfamily of 6e-04
cd13147 441 cd13147, MATE_MJ0709_like, Uncharacterized subfami 8e-04
cd13145440 cd13145, MATE_like_5, Uncharacterized subfamily of 9e-04
cd13131435 cd13131, MATE_NorM_like, Subfamily of the multidru 0.004
>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family Back     alignment and domain information 
 Score =  469 bits (1209), Expect = e-163
 Identities = 190/437 (43%), Positives = 279/437 (63%), Gaps = 3/437 (0%)

Query: 39  ESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMA 98
           E+KKL  +  P + + L  YS+ V++  F GHLG +ELAA S+A++      F +LLG+A
Sbjct: 1   EAKKLLRLAAPLVLTSLLQYSLSVVSVVFVGHLGKLELAAASLASSFANVTGFSILLGLA 60

Query: 99  SALETLCGQAFGAKRYYMLGVYMQRSWIVLFVCCVLLLPLYLFASPVLKLLGQPDDVAEL 158
           SAL+TLCGQAFGAK Y ++GVY+QR+ ++L +CCV +  L+L   P+L LLGQ  ++A L
Sbjct: 61  SALDTLCGQAFGAKNYKLVGVYLQRALVILLLCCVPISLLWLNTEPILLLLGQDPEIARL 120

Query: 159 SGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVALLVHIFVSWLFVNRMQLGV 218
           +G    W+IP  F++A   PL+R+LQ+Q   + + ++SLVALL++I +++L V  + LG 
Sbjct: 121 AGEYLRWLIPGLFAYALFEPLKRYLQAQGIVLPLVYISLVALLLNILLNYLLVFVLGLGF 180

Query: 219 IGTAATLNFSWWILVFGLFGYVSC-GGCPLTWTGFTLEAFSGLWQFVKLSAASGVMLCLE 277
           IG A   + S+W++V  L  Y+    G   TW GF+ EAF G   F+KL+  S +MLCLE
Sbjct: 181 IGAALATSISYWLIVVLLLLYIFFSKGHKATWGGFSREAFRGWGPFLKLAIPSALMLCLE 240

Query: 278 NWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKG 337
            W + IL+ + G L    +A+ A SIC+T      MIPL       VRV NELGAGN K 
Sbjct: 241 WWAFEILVLLAGLLP-GTVALAAQSICLTTTSLLYMIPLGISIAASVRVGNELGAGNPKR 299

Query: 338 AKFATIVSVVTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSV 397
           AK A IV+++ S++IG+   +L+++  +  A +F+S E V+  V  L  +LA   + + +
Sbjct: 300 AKLAAIVALILSLVIGVVVAILLLVLRDVWAYLFTSDEEVIALVADLLPILALFQIFDGL 359

Query: 398 QPILSGVAVGSGWQSYVAYINLGCYYLIGVPLGCLMGWVFHQGVMGIWAGMIFGGTAIQT 457
           Q +LSGV  G G Q   AY+NL  YYLIG+P+G L+ +V   G+ G+W G+I  G  +Q 
Sbjct: 360 QAVLSGVLRGCGRQKLGAYVNLVAYYLIGLPVGLLLAFVLGLGLKGLWIGLIA-GLILQA 418

Query: 458 LILAIITIRCDWDKEAE 474
           +IL +I +R DWDKEAE
Sbjct: 419 VILLLIILRTDWDKEAE 435

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA Back     alignment and domain information
>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|166843 PRK00187, PRK00187, multidrug efflux protein NorA; Provisional Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|240549 cd13144, MATE_like_4, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240554 cd13149, MATE_like_2, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240551 cd13146, MATE_like_6, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240545 cd13140, MATE_like_1, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240552 cd13147, MATE_MJ0709_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins, similar to Methanocaldococcus jannaschii MJ0709 Back     alignment and domain information
>gnl|CDD|240550 cd13145, MATE_like_5, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 487
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 100.0
PRK10189478 MATE family multidrug exporter; Provisional 100.0
PRK00187464 multidrug efflux protein NorA; Provisional 100.0
PRK01766456 multidrug efflux protein; Reviewed 100.0
PRK10367441 DNA-damage-inducible SOS response protein; Provisi 100.0
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 100.0
KOG1347473 consensus Uncharacterized membrane protein, predic 100.0
TIGR01695502 mviN integral membrane protein MviN. This model re 100.0
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 100.0
TIGR00797342 matE putative efflux protein, MATE family. The MAT 100.0
PRK15099416 O-antigen translocase; Provisional 100.0
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 100.0
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.98
PRK10459492 colanic acid exporter; Provisional 99.98
COG2244480 RfbX Membrane protein involved in the export of O- 99.96
COG0534 455 NorM Na+-driven multidrug efflux pump [Defense mec 99.89
PRK10367 441 DNA-damage-inducible SOS response protein; Provisi 99.89
PRK10189 478 MATE family multidrug exporter; Provisional 99.88
PRK00187 464 multidrug efflux protein NorA; Provisional 99.88
PRK09575 453 vmrA multidrug efflux pump VmrA; Reviewed 99.87
PRK01766 456 multidrug efflux protein; Reviewed 99.87
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 99.8
TIGR01695502 mviN integral membrane protein MviN. This model re 99.79
TIGR00797 342 matE putative efflux protein, MATE family. The MAT 99.78
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.76
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.71
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.71
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 99.71
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.66
PRK10459492 colanic acid exporter; Provisional 99.66
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 99.63
PRK15099416 O-antigen translocase; Provisional 99.61
COG2244480 RfbX Membrane protein involved in the export of O- 99.54
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 99.34
KOG1347 473 consensus Uncharacterized membrane protein, predic 99.27
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 99.07
PF07260345 ANKH: Progressive ankylosis protein (ANKH); InterP 98.86
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 98.58
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.34
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.25
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 98.19
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 98.15
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 97.89
PF07260 345 ANKH: Progressive ankylosis protein (ANKH); InterP 97.8
COG4267467 Predicted membrane protein [Function unknown] 97.62
PF05975 386 EcsB: Bacterial ABC transporter protein EcsB; Inte 83.3
COG4267 467 Predicted membrane protein [Function unknown] 82.05
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=3.6e-56  Score=438.65  Aligned_cols=435  Identities=24%  Similarity=0.350  Sum_probs=409.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcch
Q 011371           37 WVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYM  116 (487)
Q Consensus        37 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~g~~~~a~~~~~~~~~~~~~g~~~~~~~~~s~~~~~~~~~~  116 (487)
                      ++..|+++++++|+++++++..+++.+|+.++||+|++++++.++++++..+ ...+..|++.+..+.+||++|+||+++
T Consensus        13 ~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~-~~~~~~gl~~g~~~liaq~~Ga~~~~~   91 (455)
T COG0534          13 KKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFL-IIAIFIGLGTGTTVLVAQAIGAGDRKK   91 (455)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHcCCchHH
Confidence            4578999999999999999999999999999999999999999999999998 888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHHHHH
Q 011371          117 LGVYMQRSWIVLFVCCVLLL-PLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWV  195 (487)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  195 (487)
                      +++..+++++++++.+++.. +.+.+.++++.+++.++|+.+.+..|+++..++.|+..+...+.+.+|+.||++.+++.
T Consensus        92 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~~  171 (455)
T COG0534          92 AKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMYI  171 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHH
Confidence            99999999999999997766 55899999999999988999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhh-cC-CCcchhHHHHHHHHHHHHHHHHHHHhccCc--CCcCCCCchHhhhchHHHHHHHhHHH
Q 011371          196 SLVALLVHIFVSWLFVNR-MQ-LGVIGTAATLNFSWWILVFGLFGYVSCGGC--PLTWTGFTLEAFSGLWQFVKLSAASG  271 (487)
Q Consensus       196 ~~~~~~~~i~l~~~li~~-~~-~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~~  271 (487)
                      ++++.++|+++|++|++. ++ +|+.|+++||++++.+..++.++++.+++.  .....+..+.+++..|++++.|.|.+
T Consensus       172 ~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~~  251 (455)
T COG0534         172 LLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPIF  251 (455)
T ss_pred             HHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccHH
Confidence            999999999999999997 57 999999999999999999999988887642  23322333344578999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHH
Q 011371          272 VMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVI  351 (487)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~  351 (487)
                      +++..+...+...+.+++++|  ++++|+|+++.++.++.++++.+++++..|.+++++|++|++++++..+.+..+++.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~~  329 (455)
T COG0534         252 LESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSLL  329 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999  778999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHhhhhhHhhccCcchhhHHHHHHHHHHHhHHHHH
Q 011371          352 IGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIGVPLGC  431 (487)
Q Consensus       352 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~  431 (487)
                      +++..+++++++++++.++|++|+++.+.+..++++..+..++++.+.+..+.+||.||+|.+++.++.+.|.+.+|+.+
T Consensus       330 ~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~~  409 (455)
T COG0534         330 IALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLAY  409 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHH
Q 011371          432 LMGWVFHQGVMGIWAGMIFGGTAIQTLILAIITIRCDWDKEAETA  476 (487)
Q Consensus       432 ~l~~~~~~g~~G~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  476 (487)
                      ++.++. +|..|+|++.. .++.+..++..+++++++|+++..+.
T Consensus       410 ~l~~~~-~g~~Gvw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  452 (455)
T COG0534         410 LLGFFF-LGLAGVWIGFP-LSLILRAILLLLRLRRGRWRRKAVAA  452 (455)
T ss_pred             HHhhhc-ccchHHHHHHH-HHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence            999544 99999999999 99999999999999998888776554

>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query487
3mkt_A460 Structure Of A Cation-Bound Multidrug And Toxin Com 1e-11
>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound Extrusion (Mate) Transporter Length = 460 Back     alignment and structure 
Iteration: 1

 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 85/429 (19%), Positives = 175/429 (40%), Gaps = 23/429 (5%)
Query: 39  ESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNV-IVGFDFGLLLGM 97
           E+  L  +  P + + +A   M  +    AG +  I++AA+SIA ++ +    FG+  G+
Sbjct: 10  EASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFGV--GL 67
Query: 98  ASALETLCGQAFGAKRYYMLGVYMQRSWIXXXXXXXXXXXXXXXASPVLKLLGQPDDVAE 157
             AL  +  Q  GA R + +   + +  I                  +++ +   + +A 
Sbjct: 68  LMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMAT 127
Query: 158 LS---GMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVALLVHIFVSWLFV--- 211
            +       I+ +P +  F     L+ F            +  + LL++I ++W+FV   
Sbjct: 128 KTVGYMHAVIFAVPAYLLFQ---ALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGK 184
Query: 212 -NRMQLGVIGTAATLNFSWWILVFGLFGYVSCG---GCPLTWTGFTLEAFSGLWQFVKLS 267
               +LG +G        +WI++  L  Y+           +  F       L +  +L 
Sbjct: 185 FGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLG 244
Query: 268 AASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVA 327
                 L  E   + ++  +   L +  +A  A  + +  +    M P++  A   +RV 
Sbjct: 245 FPVAAALFFEVTLFAVVALLVAPLGSTVVA--AHQVALNFSSLVFMFPMSIGAAVSIRVG 302
Query: 328 NELGAGNGKGAKFAXXXXXXXXXXXGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSIL 387
           ++LG  + KGA  A                LL +++  ++AL+++ ++ V+    +L + 
Sbjct: 303 HKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLF 362
Query: 388 LAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIGVPLGCLMG---WVFHQ--GVM 442
            A    +++VQ + +G   G    + + +     Y+++G+P G ++G   W+  Q  G  
Sbjct: 363 AAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAK 422
Query: 443 GIWAGMIFG 451
           G W G I G
Sbjct: 423 GFWLGFIIG 431
  Database: pdbaa

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query487
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 1e-68
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Back     alignment and structure
 Score =  226 bits (577), Expect = 1e-68
 Identities = 83/434 (19%), Positives = 181/434 (41%), Gaps = 15/434 (3%)

Query: 30  KNLTRTIWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGF 89
           +N       E+  L  +  P + + +A   M  +    AG +  I++AA+SIA ++ +  
Sbjct: 1   ENSVHRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS 60

Query: 90  DFGLLLGMASALETLCGQAFGAKRYYMLGVYMQRSWIVLFVCCVLLLPLYLFASPVLKLL 149
                +G+  AL  +  Q  GA R + +   + +  I+  +  V ++ +      +++ +
Sbjct: 61  -ILFGVGLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFM 119

Query: 150 GQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVALLVHIFVSWL 209
              + +A  +      +I    ++     L+ F            +  + LL++I ++W+
Sbjct: 120 DVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWI 179

Query: 210 FVNRM----QLGVIGTAATLNFSWWILVFGLFGYVSCGG---CPLTWTGFTLEAFSGLWQ 262
           FV       +LG +G        +WI++  L  Y+           +  F       L +
Sbjct: 180 FVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIR 239

Query: 263 FVKLSAASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGT 322
             +L       L  E   + ++  +   L +  +A  A  + +  +    M P++  A  
Sbjct: 240 LFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVA--AHQVALNFSSLVFMFPMSIGAAV 297

Query: 323 GVRVANELGAGNGKGAKFATIVSVVTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVN 382
            +RV ++LG  + KGA  A  V ++T +       LL +++  ++AL+++ ++ V+    
Sbjct: 298 SIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAM 357

Query: 383 KLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIGVPLGCLMGWV-----F 437
           +L +  A    +++VQ + +G   G    + + +     Y+++G+P G ++G        
Sbjct: 358 QLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQ 417

Query: 438 HQGVMGIWAGMIFG 451
             G  G W G I G
Sbjct: 418 PLGAKGFWLGFIIG 431

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query487
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 100.0
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 99.82
1pw4_A451 Glycerol-3-phosphate transporter; transmembrane, i 84.43
4aps_A491 DI-OR tripeptide H+ symporter; transport protein, 84.18
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
Probab=100.00  E-value=7.9e-49  Score=392.72  Aligned_cols=431  Identities=19%  Similarity=0.330  Sum_probs=393.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCC
Q 011371           34 RTIWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKR  113 (487)
Q Consensus        34 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~g~~~~a~~~~~~~~~~~~~g~~~~~~~~~s~~~~~~~  113 (487)
                      ...++..|++++.++|.+++++...+.+.+|+.+++|+|++++|+++++.++..+ ...+..|++.+..+.+++++|++|
T Consensus         5 ~~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~-~~~~~~g~~~~~~~~is~~~g~~~   83 (460)
T 3mkt_A            5 HRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLP-SILFGVGLLMALVPVVAQLNGAGR   83 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHH-HHHHHHHHHHHHGGGCTTTTSSSS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCC
Confidence            4456789999999999999999999999999999999999999999999999777 667789999999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHHH
Q 011371          114 YYMLGVYMQRSWIVLFVCCVLLLPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIA  193 (487)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  193 (487)
                      +++.++.+++++.+..+.+++..+++.+.++++.+++.+++..+.+..|+++..++.++..+.....+++++.||++.++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~  163 (460)
T 3mkt_A           84 QHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAM  163 (460)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence            99999999999999999988877667888888888888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhh-c---CCCcchhHHHHHHHHHHHHHHHHHHHhccCcCC--c-CCCCchHhhhchHHHHHH
Q 011371          194 WVSLVALLVHIFVSWLFVNR-M---QLGVIGTAATLNFSWWILVFGLFGYVSCGGCPL--T-WTGFTLEAFSGLWQFVKL  266 (487)
Q Consensus       194 ~~~~~~~~~~i~l~~~li~~-~---~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~  266 (487)
                      ..++++.++|+++++++++. +   ++|+.|+++++.+++.+..++..++.++++...  + ++++...+++..|+++++
T Consensus       164 ~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  243 (460)
T 3mkt_A          164 VIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRL  243 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHH
Confidence            99999999999999999975 3   689999999999999999988877776652211  1 122223345778999999


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHH
Q 011371          267 SAASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSV  346 (487)
Q Consensus       267 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~~  346 (487)
                      +.|..++++.+.+...+++.+++++|  ++++++|+++.++.++..++..+++++..|.+++++|++|.++.++..+++.
T Consensus       244 ~~p~~~~~~~~~~~~~~~~~~~~~~g--~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~  321 (460)
T 3mkt_A          244 GFPVAAALFFEVTLFAVVALLVAPLG--STVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGL  321 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            99999999999999999999999997  6789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHhhhhhHhhccCcchhhHHHHHHHHHHHh
Q 011371          347 VTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILSGVAVGSGWQSYVAYINLGCYYLIG  426 (487)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~  426 (487)
                      ++...++++.+++++++++++..+|++|+++.+.+..++++++++.++.+++.+..+++++.||+|.+++.++++.|+++
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~  401 (460)
T 3mkt_A          322 MTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLG  401 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998889999999999999999999999999999999999999999999878999


Q ss_pred             HHHHHHHHHH----hc-CchhHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 011371          427 VPLGCLMGWV----FH-QGVMGIWAGMIFGGTAIQTLILAIITIRCD  468 (487)
Q Consensus       427 i~l~~~l~~~----~~-~g~~G~~~a~~~~~~~i~~~~~~~~~~~~~  468 (487)
                      +|+++++...    ++ +|..|+|+++. +++.+..++..+.++|+.
T Consensus       402 i~l~~~l~~~~~~~~~~~G~~G~~~a~~-~~~~~~~~~~~~~~~~~~  447 (460)
T 3mkt_A          402 LPTGYILGMTNWLTEQPLGAKGFWLGFI-IGLSAAALMLGQRLYWLQ  447 (460)
T ss_dssp             HHHHHHHHHHHTSSCCSSHHHHHHHHHH-HHHHHHHHHHHSSSSSSC
T ss_pred             HHHHHHHHhhhhccccccCchhHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            9999999954    44 99999999999 999999887776666543
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Back     alignment and structure
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00