Citrus Sinensis ID: 011414

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480------
Protein Sequence
MTGNESESELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEEAKPTLLWSALYIQDLSLSHVFI
Secondary Structure (PSIPRED)
cccccccccccccccccccccEEEEEEEcccHHHHHHHHHHHHccccEEEcccccccccccccccHHHHHHHHccccccccccccccccccHHcHHHccccccccccccccccccEEEEcccHHHHHHHHHcccEEEEEEEEcEEEEEcccccEEEccccHHHHcccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHccccccccEEEcccccccHHHHHHHHHHHcccEEEccccEEEEEEccccccEEEEEEccccEEEEcEEEEcccccccccccccccHHHHHHccccccccccEEEEEEEEEcccccccccccEEEccccccccccccEEEEEEEcccccccccccEEEEEEEEEcccccHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEEEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
cccccccEccccccccccccccccEEEEcccHHHHHHHHHHHHccccEEEEcccccccccccEEcHHHHHHHHcccccccccccccccccccccccccHHHcccccccEEEccccHHHHccccHHHEEEEcccEEEEEEEEEcEEEEEEcccEEEEccccHHHHHHcccccHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHccccccHHHHHHHHHHHccccHHccccccccHHHHHHHHHHHHHHHHHccccccEEEEccccccccHHHHHHHHHHccEEEccccccEEEEEccccEEEEEEEccccEEEEEEEEEccccccccccccccccccccccccccEEEccEEEEEEEEEccccccccccEEEEEccHHccccccccEEEEEEEccccccccccEEEEEEEEEEccccHHHHHHHHHHHHcccHHHcccccccccccccccccccEEHHHHHHHHHHHHcHEcc
Coil and Loop (DISEMBL)
mtgneseselpvppyppieptafDLIVIGTGLPESVISAAAsasgksvlhldpnpfygshfsslSIADLTHflnshstpssvcpdplysdveiSNYASRLLsqhprnfnldvsgprvlFCADHAVDLMLKSGASHYlefksidatfmldadaklcsvpdsraaifkdkslglmEKNQLMRFFKLVQGhlsldeseennvriseedldspFAEFLtkmklphkIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGAliypiygqgelpqaFCRRAAVKGCLYVLRMPvislltdqnsgsykgvrlasgqdilshklvldpsftvpgslasSHQQLQESFQAfslsdnkgkvargicitrsslkpdlsnflvifpprslfpeqvTSIRVLQlggnlavcpLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTgtagnsstaqsedmeeakPTLLWSALYIQdlslshvfi
Flexible Loop (DISEMBL)
mtgneseselpvppyppIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISlltdqnsgsYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAfslsdnkgKVARGICItrsslkpdlsnFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGnsstaqsedmeEAKPTLLWSALYIQDLSLSHVFI
Low Complexity Region (SEG)
MTGNeseselpvppyppiepTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEEAKPTLLWSALYIQDLSLSHVFI
Disordered region (IsUnstruct)
******************EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHS***SVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLS******************PFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTV************************GKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTG******************TLLWSALYIQDLSLSHV**
Disordered Region (DISOPRED)
***************PPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSL***************LSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCD******KLLHAALSALQKLLVTGTAG***********EAKPTLLWSALYIQDLSLSHVFI
Disordered Region (DISEMBL)
***********VPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTG***************AKPTLLWSALYIQDLSLSHVFI
Disordered Region (DISPRO)
******ESELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSH**************************QHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLA***********AFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEEAKPTLLWSALYIQDLSLSHVFI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTGNESESELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEEAKPTLLWSALYIQDLSLSHVFI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	486	2.2.26 [Sep-21-2011]
Q9V8W3	511	Rab proteins geranylgeran	yes	no	0.617	0.587	0.340	3e-41
P32864	603	Rab proteins geranylgeran	yes	no	0.796	0.641	0.279	3e-32
P24386	653	Rab proteins geranylgeran	yes	no	0.670	0.499	0.299	5e-32
O93831	640	Rab proteins geranylgeran	N/A	no	0.792	0.601	0.275	5e-32
Q9QZD5	621	Rab proteins geranylgeran	yes	no	0.681	0.533	0.296	1e-31
Q10305	440	Probable secretory pathwa	yes	no	0.761	0.840	0.259	4e-31
Q9QXG2	665	Rab proteins geranylgeran	no	no	0.666	0.487	0.289	5e-31
P37727	650	Rab proteins geranylgeran	no	no	0.670	0.501	0.288	8e-30
P26374	656	Rab proteins geranylgeran	no	no	0.666	0.493	0.281	3e-29
P21856	447	Rab GDP dissociation inhi	no	no	0.646	0.702	0.270	1e-28

>sp|Q9V8W3|RABEP_DROME Rab proteins geranylgeranyltransferase component A OS=Drosophila melanogaster GN=Rep PE=2 SV=1

 Score =  169 bits (429), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 111/326 (34%), Positives = 165/326 (50%), Gaps = 26/326 (7%)

Query: 20  PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTP 79
           P  FDL+VIGTG  ES I+AA S  GKSVLHLD N +YG  +SS S+  L   L+    P
Sbjct: 6   PEQFDLVVIGTGFTESCIAAAGSRIGKSVLHLDSNEYYGDVWSSFSMDALCARLDQEVEP 65

Query: 80  SSVCPDPLY--------SDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKS 131
            S   +  Y        S+ +  ++    +    R F+LD+  PR+L+ A   V L++KS
Sbjct: 66  HSALRNARYTWHSMEKESETDAQSWNRDSVLAKSRRFSLDLC-PRILYAAGELVQLLIKS 124

Query: 132 GASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSL 191
               Y EF+++D   M   + ++ SVP SR+ +F  K+L ++EK  LM+F          
Sbjct: 125 NICRYAEFRAVDHVCMRH-NGEIVSVPCSRSDVFNTKTLTIVEKRLLMKFLTACN----- 178

Query: 192 DESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGI 251
           D  E+     S E     F E+L   ++  KI S V+ AIAM        E       G+
Sbjct: 179 DYGEDKCNEDSLEFRGRTFLEYLQAQRVTEKISSCVMQAIAMCGPSTSFEE-------GM 231

Query: 252 NRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNS 311
            R   +  S+GR+ N     ++P+YG GELPQ FCR  AV G +Y L+  V  +  D NS
Sbjct: 232 QRTQRFLGSLGRYGNT--PFLFPMYGCGELPQCFCRLCAVYGGIYCLKRAVDDIALDSNS 289

Query: 312 GSYKGVRLASGQDILSHKLVLDPSFT 337
             +  +  ++G+ + +  +V  P +T
Sbjct: 290 NEF--LLSSAGKTLRAKNVVSAPGYT 313

Binds unprenylated Rab proteins, presents it to the catalytic component B, and remains bound to it after the geranylgeranyl transfer reaction. The component A is thought to be regenerated by transferring its prenylated Rab to a protein acceptor.
Drosophila melanogaster (taxid: 7227)

>sp|P32864|RAEP_YEAST Rab proteins geranylgeranyltransferase component A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRS6 PE=1 SV=2

 Score =  140 bits (353), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 125/448 (27%), Positives = 200/448 (44%), Gaps = 61/448 (13%)

Query: 14  PYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFL 73
           P P   P   D+++ GTG+ ESV++AA +  G +VLH+D N +YG   ++L++  +  ++
Sbjct: 38  PLPATTPDKVDVLIAGTGMVESVLAAALAWQGSNVLHIDKNDYYGDTSATLTVDQIKRWV 97

Query: 74  NSHSTPSSVCPDPLYSDVEISNYASRLLSQ---HPRNFNLDVSGPRVLFCADHAVDLMLK 130
           N  +  S  C    Y + ++  Y S L+       R+F +D+S P++LF     + +++K
Sbjct: 98  NEVNEGSVSC----YKNAKL--YVSTLIGSGKYSSRDFGIDLS-PKILFAKSDLLSILIK 150

Query: 131 SGASHYLEFKSIDA--TFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGH 188
           S    YLEF+S+    T+  D   KL    +++  IF D++L LM K  LM+F K V   
Sbjct: 151 SRVHQYLEFQSLSNFHTYENDCFEKLT---NTKQEIFTDQNLPLMTKRNLMKFIKFVLNW 207

Query: 189 LSLDESEENNVRISEEDLDSPFAEFL-TKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKT 247
                  E    I +   +   ++FL  K KL       ++++I +  YD  V     K 
Sbjct: 208 -------EAQTEIWQPYAERTMSDFLGEKFKLEKPQVFELIFSIGLC-YDLNV-----KV 254

Query: 248 RDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLT 307
            + + R+  Y +S   +     AL     G GEL Q FCR AAV G  Y L   ++S   
Sbjct: 255 PEALQRIRRYLTSFDVY-GPFPALCSKYGGPGELSQGFCRSAAVGGATYKLNEKLVSF-- 311

Query: 308 DQNSGSYKGVRLASGQDI-LSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVA 366
              + + K      G  + +S K+++ P+     S     QQ Q              V 
Sbjct: 312 ---NPTTKVATFQDGSKVEVSEKVIISPTQAPKDSKHVPQQQYQ--------------VH 354

Query: 367 RGICITRS----SLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFS 422
           R  CI  +          S  +V+FPP SL       ++   LG    +CP G  V Y S
Sbjct: 355 RLTCIVENPCTEWFNEGESAAMVVFPPGSLKSGNKEVVQAFILGAGSEICPEGTIVWYLS 414

Query: 423 ALCDEVNQGKKL---LHAALSALQKLLV 447
                  QG +    + AAL A++  L+
Sbjct: 415 T----TEQGPRAEMDIDAALEAMEMALL 438

Binds unprenylated Rab proteins, presents it to the catalytic Rab GGTase dimer, and remains bound to it after the geranylgeranyl transfer reaction. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P24386|RAE1_HUMAN Rab proteins geranylgeranyltransferase component A 1 OS=Homo sapiens GN=CHM PE=1 SV=3

 Score =  139 bits (350), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 111/371 (29%), Positives = 174/371 (46%), Gaps = 45/371 (12%)

Query: 106 RNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIF 165
           R FN+D+   ++L+     +DL++KS  S Y EFK+I        + ++  VP SRA +F
Sbjct: 225 RRFNIDLVS-KLLYSRGLLIDLLIKSNVSRYAEFKNITRILAF-REGRVEQVPCSRADVF 282

Query: 166 KDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS 225
             K L ++EK  LM+F      +    +  +    I+       F E+L   KL   ++ 
Sbjct: 283 NSKQLTMVEKRMLMKFLTFCMEYEKYPDEYKGYEEIT-------FYEYLKTQKLTPNLQY 335

Query: 226 IVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAF 285
           IV+++IAM       SE    T DG+     +   +GR+ N     ++P+YGQGELPQ F
Sbjct: 336 IVMHSIAM------TSETASSTIDGLKATKNFLHCLGRYGNT--PFLFPLYGQGELPQCF 387

Query: 286 CRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASS 345
           CR  AV G +Y LR  V  L+ D+ S   K +    GQ I+S   +++ S+  P ++ S 
Sbjct: 388 CRMCAVFGGIYCLRHSVQCLVVDKESRKCKAIIDQFGQRIISEHFLVEDSY-FPENMCSR 446

Query: 346 HQQLQESFQAFSLSDNKGKVARGICIT-RSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQ 404
            Q  Q              ++R + IT RS LK D    + I    +  P    ++RV++
Sbjct: 447 VQYRQ--------------ISRAVLITDRSVLKTDSDQQISILTVPAEEP-GTFAVRVIE 491

Query: 405 LGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEE 464
           L  +   C  G ++++ +  C      ++ L    S +QKL V  T       Q E    
Sbjct: 492 LCSSTMTCMKGTYLVHLT--CTSSKTAREDLE---SVVQKLFVPYTEMEIENEQVE---- 542

Query: 465 AKPTLLWSALY 475
            KP +LW ALY
Sbjct: 543 -KPRILW-ALY 551

Binds unprenylated Rab proteins, presents it to the catalytic Rab GGTase dimer, and remains bound to it after the geranylgeranyl transfer reaction. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane. Also a pre-formed complex consisting of CHM and the Rab GGTase dimer (RGGT or component B) can bind to and prenylate Rab proteins; this alternative pathway is proposed to be the predominant pathway for Rab protein geranylgeranylation.

Homo sapiens (taxid: 9606)

>sp|O93831|RAEP_CANAX Rab proteins geranylgeranyltransferase component A OS=Candida albicans GN=MRS6 PE=3 SV=1

 Score =  139 bits (350), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 121/439 (27%), Positives = 212/439 (48%), Gaps = 54/439 (12%)

Query: 24  DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHF---LNSHSTPS 80
           D+++IGTGL ES+++AA S  G  VLH+D N +YG   S+L+I  L  +   +NS     
Sbjct: 5   DVLIIGTGLQESILAAALSWQGTQVLHIDSNTYYGDSCSTLTIEQLKKWCGDVNSGKIHQ 64

Query: 81  SVCPDPLYSDVEISNYASRLLSQHP-RNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEF 139
                  + D +I     +  +Q+  +++ +D++ P+++FC    + L++KS    YLEF
Sbjct: 65  -------FQDAQIYIPGGKQSNQYTSKDYGIDLT-PKIMFCQSDLLSLLIKSRVYRYLEF 116

Query: 140 KSIDATFMLDADAKLCSV-PDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENN 198
           +S+    + + D     V   ++  IF DKSL LM K    R+       L LD   +  
Sbjct: 117 QSLSNFHVFENDDFQQKVNATTKQDIFTDKSLSLMTK----RYLMKFLKFLLLDPDYKQR 172

Query: 199 VRISEEDLDSPFAEFLTK-MKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALY 257
           V+      D+P   FL +  KL     + ++Y+I ++ Y ++ S     T+  + R+  +
Sbjct: 173 VKPY---ADTPIQVFLQQEFKLEEPQINELVYSIGLS-YKEQTS-----TKQALIRMKRF 223

Query: 258 NSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPV-----ISLLTDQNSG 312
            SS   +      ++    G GEL Q FCR AAV G  Y L   +     IS +   N G
Sbjct: 224 LSSFDVY-GKFPCMVSKFGGPGELSQGFCRSAAVAGTTYKLNTNLTDFDPISKIAHFNDG 282

Query: 313 SYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICIT 372
           S+  +         + K+++ P+  +P  L SS+ ++ E+ Q +        V R + + 
Sbjct: 283 SHIKI---------NEKIIISPT-QLPKFLQSSYNKVVENLQPYY-------VTRLVTVV 325

Query: 373 RSSLKPDL----SNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEV 428
           R   K  +    S+ +V+FPP SL  +   S++V+   GN  VCP G  + + S +  ++
Sbjct: 326 RRDCKEWMSGNESSAIVVFPPHSLPTDNQHSVQVIIQNGNSGVCPDGQAIWFSSTVEQDL 385

Query: 429 NQGKKLLHAALSALQKLLV 447
           ++ K  L +A   ++  L+
Sbjct: 386 SRAKVDLESAFEKMETSLL 404

Binds unprenylated Rab proteins, presents it to the catalytic Rab GGTase dimer, and remains bound to it after the geranylgeranyl transfer reaction. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.

Candida albicans (taxid: 5476)

>sp|Q9QZD5|RAE2_MOUSE Rab proteins geranylgeranyltransferase component A 2 OS=Mus musculus GN=Chml PE=2 SV=2

 Score =  137 bits (346), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 112/378 (29%), Positives = 176/378 (46%), Gaps = 47/378 (12%)

Query: 101 LSQHPRNFNLD-VSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPD 159
           + +  R FN+D VS P  L+     +DL++KS  S Y EFK++        + K+  VP 
Sbjct: 221 MVKESRRFNIDLVSKP--LYSQGSLIDLLIKSNVSRYAEFKNVTRILAF-WEGKVEQVPC 277

Query: 160 SRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKL 219
           SRA +F  K L ++EK  LM+F      +    +  ++  + S       F+++L   KL
Sbjct: 278 SRADVFNSKELSMVEKRMLMKFLTFCLDYEQHSDEYQDFKQCS-------FSDYLKTKKL 330

Query: 220 PHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQG 279
              ++  +L++IAM       SE    T DG+     +   +GRF N     I+P+YG G
Sbjct: 331 TPNLQHFILHSIAM------TSESSCTTLDGLQATKNFLQCLGRFGNT--PFIFPLYGHG 382

Query: 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVP 339
           E+PQ FCR  AV G +Y LR  V  L+ D++SG  KG+  A GQ I ++  +++ S+ +P
Sbjct: 383 EIPQCFCRMCAVFGGVYCLRHKVQCLVVDKDSGRCKGIIDAFGQRISANYFIVEDSY-LP 441

Query: 340 GSLASSHQQLQESFQAFSLSDNKGKVARGICIT-RSSLKPDLSNFLVIFPPRSLFPEQVT 398
               S+ Q  Q              ++R + IT +S LK D    + I     L P   T
Sbjct: 442 KETCSNVQYKQ--------------ISRAVLITDQSILKTDSDQQISILVVPPLEP-GTT 486

Query: 399 SIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQ 458
           S+RV++L  +   C    ++++ +  C      ++ L   +  L        AG      
Sbjct: 487 SVRVMELCSSTMTCMKDSYLVHLT--CSSSKTAREDLEPVVKQLFIPEAEAEAGKD---- 540

Query: 459 SEDMEEAKPTLLWSALYI 476
               E  KP LLW ALY 
Sbjct: 541 ----ELRKPRLLW-ALYF 553

Binds unprenylated Rab proteins, presents it to the catalytic Rab GGTase dimer, and remains bound to it after the geranylgeranyl transfer reaction. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane. Less effective than REP-1 in supporting prenylation of Rab3 family.

Mus musculus (taxid: 10090)

>sp|Q10305|GDI1_SCHPO Probable secretory pathway GDP dissociation inhibitor 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gdi1 PE=3 SV=1

 Score =  136 bits (342), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 112/432 (25%), Positives = 198/432 (45%), Gaps = 62/432 (14%)

Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
           +D+IV+GTGL E V+S   S  GK VLH+D N +YG+  +SL++  L         P   
Sbjct: 5   YDVIVLGTGLTECVLSGLLSVDGKKVLHIDRNDYYGADSASLNLTQLYALFR----PGEQ 60

Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
            P+ L  D               R++ +D+  P+ L       ++++ +  + Y+EFK I
Sbjct: 61  RPESLGRD---------------RDWCVDLV-PKFLMANGDLTNILIYTDVTRYIEFKQI 104

Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
             +++   D ++  VP +     K   + L EK +  +F + V  +   D S   ++ I 
Sbjct: 105 AGSYVY-RDGRIAKVPGNEMEALKSPLMSLFEKRRAKKFLEWVNNYREDDPSTYKDINID 163

Query: 203 EEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIG 262
            + ++S F +F     L    +  + +A+A+   D  + +   +TR+   R+ LY SSI 
Sbjct: 164 RDSMESVFKKF----GLQSGTQDFIGHAMALYLDDAYLKKPARETRE---RILLYASSIA 216

Query: 263 RFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG 322
           +F  +    IYP+YG GELPQ F R +A+ G  Y+L  PV  ++   + G   GVR  SG
Sbjct: 217 KFGKS--PYIYPLYGLGELPQGFARLSAIYGGTYMLNQPVDEIVYG-DDGVAIGVR--SG 271

Query: 323 QDILSHKLVL-DPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL--KPD 379
             +   K ++ DPS+             +E  ++       G++ R ICI    +    +
Sbjct: 272 DQVAKAKQIIGDPSY------------FREKVRSV------GRLVRAICILNHPIPNTDN 313

Query: 380 LSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCD------EVNQGKK 433
           L +  +I P   +  ++   I +  +     VCP G ++   S + +      E+  G K
Sbjct: 314 LDSVQIIIPQNQV--KRKHDIYIAGISSVHNVCPKGYYLAIISTIVETANPLSEIAPGLK 371

Query: 434 LLHAALSALQKL 445
           LL   + +  ++
Sbjct: 372 LLGPVVESFSRV 383

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9QXG2|RAE1_MOUSE Rab proteins geranylgeranyltransferase component A 1 OS=Mus musculus GN=Chm PE=2 SV=1

 Score =  136 bits (342), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 108/373 (28%), Positives = 172/373 (46%), Gaps = 49/373 (13%)

Query: 106 RNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIF 165
           R FN+D+   ++L+     +DL++KS  S Y EFK+I        +  +  VP SRA +F
Sbjct: 237 RRFNIDLVS-KLLYSRGLLIDLLIKSNVSRYAEFKNITRILAF-REGTVEQVPCSRADVF 294

Query: 166 KDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS 225
             K L ++EK  LM+F      +    E   +  +  EE   + F+E+L   KL   ++ 
Sbjct: 295 NSKQLTMVEKRMLMKFLTFCVEY----EDHPDEYKAYEE---TTFSEYLKTQKLTPNLQY 347

Query: 226 IVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAF 285
            VL++IAM       SE    T DG+     +   +GR+ N     ++P+YGQGELPQ F
Sbjct: 348 FVLHSIAMT------SETTSSTVDGLKATKKFLQCLGRYGNT--PFLFPLYGQGELPQCF 399

Query: 286 CRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASS 345
           CR  AV G +Y LR  V  L+ D+ S   K +    GQ I+S   V++ S+    + +  
Sbjct: 400 CRMCAVFGGIYCLRHSVQCLVVDKESRKCKAIVDQFGQRIISKHFVIEDSYLSENTCSGV 459

Query: 346 HQQLQESFQAFSLSDNKGKVARGICITRSS-LKPDLSNFLVIFPPRSLFPEQVTS--IRV 402
             +               +++R + IT  S LKPD    + I    ++  E+  S  +RV
Sbjct: 460 QYR---------------QISRAVLITDGSVLKPDSDQQVSIL---TVPAEESGSFAVRV 501

Query: 403 LQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDM 462
           ++L  +   C  G ++++ + +       K         +QKL    T   +   Q E  
Sbjct: 502 IELCSSTMTCMKGTYLVHLTCM-----SSKTAREDLERVVQKLFTPYTEIEAENEQVE-- 554

Query: 463 EEAKPTLLWSALY 475
              KP +LW ALY
Sbjct: 555 ---KPRILW-ALY 563

Binds unprenylated Rab proteins, presents it to the catalytic Rab GGTase dimer, and remains bound to it after the geranylgeranyl transfer reaction. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane. Also a pre-formed complex consisting of CHM and the Rab GGTase dimer (RGGT or component B) can bind to and prenylate Rab proteins; this alternative pathway is proposed to be the predominant pathway for Rab protein geranylgeranylation.

Mus musculus (taxid: 10090)

>sp|P37727|RAE1_RAT Rab proteins geranylgeranyltransferase component A 1 OS=Rattus norvegicus GN=Chm PE=1 SV=1

 Score =  132 bits (331), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 107/371 (28%), Positives = 167/371 (45%), Gaps = 45/371 (12%)

Query: 106 RNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIF 165
           R FN+D+   ++L+     +DL++KS  S Y EFK+I        +  +  VP SRA +F
Sbjct: 222 RRFNIDLVS-QLLYSRGLLIDLLIKSNVSRYAEFKNITRILAF-REGTVEQVPCSRADVF 279

Query: 166 KDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS 225
             K L ++EK  LM+F      +    E   +  R  E    + F+E+L   KL   ++ 
Sbjct: 280 NSKQLTMVEKRMLMKFLTFCVEY----EEHPDEYRAYE---GTTFSEYLKTQKLTPNLQY 332

Query: 226 IVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAF 285
            VL++IAM       SE    T DG+     +   +GR+ N     ++P+YGQGELPQ F
Sbjct: 333 FVLHSIAM------TSETTSCTVDGLKATKKFLQCLGRYGNT--PFLFPLYGQGELPQCF 384

Query: 286 CRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASS 345
           CR  AV G +Y LR  V  L+ D+ S   K V    GQ I+S   +++ S+    + +  
Sbjct: 385 CRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSENTCSRV 444

Query: 346 HQQLQESFQAFSLSDNKGKVARGICITRSS-LKPDLSNFLVIFPPRSLFPEQVTSIRVLQ 404
             +               +++R + IT  S LK D    + I    +  P     +RV++
Sbjct: 445 QYR---------------QISRAVLITDGSVLKTDADQQVSILAVPAEEPGSF-GVRVIE 488

Query: 405 LGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEE 464
           L  +   C  G ++++ + +       K         +QKL    T   +   Q E    
Sbjct: 489 LCSSTMTCMKGTYLVHLTCM-----SSKTAREDLERVVQKLFTPYTEIEAENEQVE---- 539

Query: 465 AKPTLLWSALY 475
            KP LLW ALY
Sbjct: 540 -KPRLLW-ALY 548

Binds unprenylated Rab proteins, presents it to the catalytic Rab GGTase dimer, and remains bound to it after the geranylgeranyl transfer reaction. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane. Also a pre-formed complex consisting of CHM and the Rab GGTase dimer (RGGT or component B) can bind to and prenylate Rab proteins; this alternative pathway is proposed to be the predominant pathway for Rab protein geranylgeranylation.

Rattus norvegicus (taxid: 10116)

>sp|P26374|RAE2_HUMAN Rab proteins geranylgeranyltransferase component A 2 OS=Homo sapiens GN=CHML PE=1 SV=2

 Score =  130 bits (326), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 105/373 (28%), Positives = 174/373 (46%), Gaps = 49/373 (13%)

Query: 106 RNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIF 165
           R FN+D+   ++L+     +DL++KS  S Y+EFK++        + K+  VP SRA +F
Sbjct: 227 RRFNIDLVS-KLLYSQGLLIDLLIKSDVSRYVEFKNVTRILAF-REGKVEQVPCSRADVF 284

Query: 166 KDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS 225
             K L ++EK  LM+F      +    +  +   + S       F+E+L   KL   ++ 
Sbjct: 285 NSKELTMVEKRMLMKFLTFCLEYEQHPDEYQAFRQCS-------FSEYLKTKKLTPNLQH 337

Query: 226 IVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAF 285
            VL++IAM       SE    T DG+N    +   +GRF N     ++P+YGQGE+PQ F
Sbjct: 338 FVLHSIAM------TSESSCTTIDGLNATKNFLQCLGRFGNT--PFLFPLYGQGEIPQGF 389

Query: 286 CRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASS 345
           CR  AV G +Y LR  V   + D+ SG  K +    GQ I +   +++ S+    + ++ 
Sbjct: 390 CRMCAVFGGIYCLRHKVQCFVVDKESGRCKAIIDHFGQRINAKYFIVEDSYLSEETCSNV 449

Query: 346 HQQLQESFQAFSLSDNKGKVARGICIT-RSSLKPDL--SNFLVIFPPRSLFPEQVTSIRV 402
             +               +++R + IT +S LK DL     ++I PP         ++RV
Sbjct: 450 QYK---------------QISRAVLITDQSILKTDLDQQTSILIVPPAE---PGACAVRV 491

Query: 403 LQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDM 462
            +L  +   C    ++++ +  C      ++ L    S ++KL    T       +  + 
Sbjct: 492 TELCSSTMTCMKDTYLVHLT--CSSSKTAREDLE---SVVKKLFTPYTE-----TEINEE 541

Query: 463 EEAKPTLLWSALY 475
           E  KP LLW ALY
Sbjct: 542 ELTKPRLLW-ALY 553

Binds unprenylated Rab proteins, presents it to the catalytic Rab GGTase dimer, and remains bound to it after the geranylgeranyl transfer reaction. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane. Less effective than REP-1 in supporting prenylation of Rab3 family.

Homo sapiens (taxid: 9606)

>sp|P21856|GDIA_BOVIN Rab GDP dissociation inhibitor alpha OS=Bos taurus GN=GDI1 PE=1 SV=1

 Score =  128 bits (321), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/370 (27%), Positives = 175/370 (47%), Gaps = 56/370 (15%)

Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
           +D+IV+GTGL E ++S   S +GK VLH+D NP+YG   SS+             TP   
Sbjct: 5   YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSI-------------TPL-- 49

Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
             + LY   ++       + +  R++N+D+  P+ L      V ++L +  + YL+FK +
Sbjct: 50  --EELYKRFQLLEGPPETMGRG-RDWNVDLI-PKFLMANGQLVKMLLYTEVTRYLDFKVV 105

Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
           + +F+     K+  VP +         +G+ EK +  +F   V         +EN+ +  
Sbjct: 106 EGSFVYKG-GKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANF------DENDPKTF 158

Query: 203 E--EDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260
           E  +  ++   +   K  L   +     +A+A+   D  + +  L+T   INR+ LY+ S
Sbjct: 159 EGVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLET---INRIKLYSES 215

Query: 261 IGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320
           + R+  +    +YP+YG GELPQ F R +A+ G  Y+L  PV  ++ +  +G   GV+ +
Sbjct: 216 LARYGKS--PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVK-S 270

Query: 321 SGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK--P 378
            G+     +L+ DPS+ VP  +  +                 G+V R ICI    +K   
Sbjct: 271 EGEVARCKQLICDPSY-VPDRVRKA-----------------GQVIRIICILSHPIKNTN 312

Query: 379 DLSNFLVIFP 388
           D ++  +I P
Sbjct: 313 DANSCQIIIP 322

Regulates the GDP/GTP exchange reaction of most Rab proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	486
359476981	556	PREDICTED: rab proteins geranylgeranyltr	0.965	0.843	0.651	1e-177
224113201	553	predicted protein [Populus trichocarpa]	0.960	0.844	0.649	1e-176
255561411	551	protein with unknown function [Ricinus c	0.954	0.842	0.630	1e-166
147798203	812	hypothetical protein VITISV_019372 [Viti	0.965	0.577	0.572	1e-165
356496561	553	PREDICTED: rab proteins geranylgeranyltr	0.952	0.837	0.606	1e-159
356538383	551	PREDICTED: rab proteins geranylgeranyltr	0.946	0.834	0.602	1e-159
357484143	552	Rab proteins geranylgeranyltransferase c	0.950	0.836	0.581	1e-157
449456881	543	PREDICTED: rab proteins geranylgeranyltr	0.950	0.850	0.582	1e-157
388517443	552	unknown [Medicago truncatula]	0.950	0.836	0.579	1e-157
22330883	563	Rab escort protein [Arabidopsis thaliana	0.960	0.829	0.584	1e-154

>gi|359476981|ref|XP_002273131.2| PREDICTED: rab proteins geranylgeranyltransferase component A 2-like [Vitis vinifera] gi|296088658|emb|CBI37649.3| unnamed protein product [Vitis vinifera]

 Score =  629 bits (1622), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 323/496 (65%), Positives = 385/496 (77%), Gaps = 27/496 (5%)

Query: 12  VPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTH 71
            P YPPIEPT FDLIV+GTGLP+SVI+AAAS++GKSVLHLD N FYGSHFSSL++ + + 
Sbjct: 4   TPSYPPIEPTDFDLIVVGTGLPQSVIAAAASSAGKSVLHLDSNSFYGSHFSSLNLDEFSS 63

Query: 72  FLNSHST--------PSSVCPD------------PLYSDVEISNYASRLLSQHPRNFNLD 111
           FL S S         PSSV  D            P+YSDVEI++++S  + +H R FNLD
Sbjct: 64  FLTSQSAVHSSHPNPPSSVAADAAEYVALDLKTRPMYSDVEITSHSSDPV-EHSRKFNLD 122

Query: 112 VSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLG 171
           VSGPRVLFCAD AVDLMLKSGAS YLEFKSIDA+F+ DAD +  +VPDSRAAIFKD+SL 
Sbjct: 123 VSGPRVLFCADAAVDLMLKSGASQYLEFKSIDASFVCDADGRFSTVPDSRAAIFKDRSLS 182

Query: 172 LMEKNQLMRFFKLVQGHLSLDESEEN--NVRISEEDLDSPFAEFLTKMKLPHKIKSIVLY 229
           L EKNQLMRFFKL+QGHL+  +  EN  N RISE+DL+SPF EFL KM+LP KIKS++LY
Sbjct: 183 LTEKNQLMRFFKLIQGHLAASDEAENDSNARISEDDLESPFVEFLNKMRLPPKIKSMILY 242

Query: 230 AIAMADYDQ---EVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFC 286
           AIAMADYDQ   EV + VL T+ GI+RLALY+SS+GRF NALGALIYPIYGQGEL QAFC
Sbjct: 243 AIAMADYDQDSIEVCKDVLDTKIGIDRLALYHSSVGRFPNALGALIYPIYGQGELTQAFC 302

Query: 287 RRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSH 346
           RRAAVKGC+YVLRMPVI+LL ++ SG  KGVRLASGQDI S KL++DPSF VP  +A S 
Sbjct: 303 RRAAVKGCIYVLRMPVIALLMEKESGHCKGVRLASGQDIFSQKLLVDPSFIVPVPVAPSQ 362

Query: 347 QQ-LQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQL 405
              + ES Q  +L D K KVARGICI +SSLKPD+SNF+ ++PPRSL+PEQ  +IR +Q+
Sbjct: 363 PDCMPESSQVINLVDAKQKVARGICIMKSSLKPDVSNFVFVYPPRSLYPEQAMAIRAVQI 422

Query: 406 GGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEEA 465
           G NL VCP GMFVLY S LC++  QGK+LL AA+ +L  L V+G   NSS+  SE+MEE 
Sbjct: 423 GSNLGVCPSGMFVLYLSTLCNDATQGKELLQAAIKSLFTLPVSGNPENSSSVHSENMEEV 482

Query: 466 KPTLLWSALYIQDLSL 481
           KPTLLWSALY Q+L +
Sbjct: 483 KPTLLWSALYTQELVM 498

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113201|ref|XP_002332635.1| predicted protein [Populus trichocarpa] gi|222832862|gb|EEE71339.1| predicted protein [Populus trichocarpa]

 Score =  624 bits (1610), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 319/491 (64%), Positives = 386/491 (78%), Gaps = 24/491 (4%)

Query: 13  PPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHF 72
           PPYP IEPT FDLI +GTGL E +++AAASASGK+VLHLD NPFYGSH+SSLS+ +LT F
Sbjct: 5   PPYPQIEPTTFDLIAVGTGLAECIVAAAASASGKTVLHLDTNPFYGSHYSSLSVPELTSF 64

Query: 73  LNSHSTPSSV---------CPD---------PLYSDVEISNYASRLLSQHPRNFNLDVSG 114
           L S+ST SS           PD         P+YSDVEIS +   L+ ++ R FNLD+ G
Sbjct: 65  LISNSTASSPPSSTSTTTDIPDYSIVNLITQPVYSDVEISCFYPELIEENLRKFNLDLCG 124

Query: 115 PRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLME 174
           PRVLFCAD ++DLMLKSGAS+Y+EFKSIDA+F+ D + KL +VPDSRAAIFKDKSL LME
Sbjct: 125 PRVLFCADKSIDLMLKSGASNYVEFKSIDASFVGDGNGKLWNVPDSRAAIFKDKSLTLME 184

Query: 175 KNQLMRFFKLVQGHL--SLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIA 232
           KNQLMRFFKLVQGHL  ++       ++IS+EDL  PF E+L+KM+LP KI+SI+LYAIA
Sbjct: 185 KNQLMRFFKLVQGHLVATVGAGTSGKMKISDEDLQRPFVEYLSKMRLPPKIRSIILYAIA 244

Query: 233 MADYDQE---VSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRA 289
           MADYDQ+   V + +LKT+DGI+RLALY SS+GRF NA GALIYPIYGQGELPQAF RR+
Sbjct: 245 MADYDQDDMGVCQNLLKTKDGIDRLALYQSSVGRFTNASGALIYPIYGQGELPQAFSRRS 304

Query: 290 AVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQL 349
           AVKGC++VLRMPV +LL +++SGSYKGVRLASGQDI S KLVLDPSFT+    AS    L
Sbjct: 305 AVKGCIHVLRMPVTALLMEKDSGSYKGVRLASGQDIFSQKLVLDPSFTLASPSASPSDLL 364

Query: 350 QESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNL 409
            ESF   S  D KGKVARGICITR+SLKPD+SN LV++PPRSL+PEQ+TSIR LQ+ GNL
Sbjct: 365 HESFNFLSTRDVKGKVARGICITRNSLKPDMSNLLVVYPPRSLYPEQITSIRALQISGNL 424

Query: 410 AVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEEAKPTL 469
           AVCPLGMFVLY SALCD+  QGK+LL+AA++AL        + +SST QSE  EE KP++
Sbjct: 425 AVCPLGMFVLYLSALCDDAIQGKRLLNAAMNALLTFPDPVNSESSSTVQSETTEE-KPSV 483

Query: 470 LWSALYIQDLS 480
           +WS LY+Q++S
Sbjct: 484 IWSGLYMQEMS 494

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561411|ref|XP_002521716.1| protein with unknown function [Ricinus communis] gi|223539107|gb|EEF40703.1| protein with unknown function [Ricinus communis]

 Score =  591 bits (1524), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 310/492 (63%), Positives = 384/492 (78%), Gaps = 28/492 (5%)

Query: 13  PPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHF 72
           P YP I+PT FDLI+IGTGL ES+I+AAASASGKSVLH+D N FYGSHFSSLSI DLT F
Sbjct: 5   PSYPSIDPTTFDLILIGTGLSESIIAAAASASGKSVLHIDQNKFYGSHFSSLSIPDLTSF 64

Query: 73  LNSHS----------------TPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPR 116
           LNS+S                T  ++    LYS+VEIS++++ L+ Q+   F+LD+SGPR
Sbjct: 65  LNSNSVPTPSPPPPQTPHPDFTVVNLTTQSLYSNVEISSFSNELIEQNCSKFSLDISGPR 124

Query: 117 VLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKN 176
           VL+CAD+++DLM+K+GA+ Y+EFKSIDA+F+ D + KL +VPDSRAAIFKDKSL LMEKN
Sbjct: 125 VLYCADNSIDLMIKTGANQYVEFKSIDASFVGDENGKLWNVPDSRAAIFKDKSLSLMEKN 184

Query: 177 QLMRFFKLVQGHLSLDESEEN----NVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIA 232
           +LMRFFKLVQ  ++ +E++E     +VRISE+DL+SPF +FL KMKL  KIKSI+LYAI 
Sbjct: 185 RLMRFFKLVQSQIATNENQEQQEEEDVRISEQDLESPFVDFLNKMKLSSKIKSIILYAIV 244

Query: 233 MADYDQE----VSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRR 288
           MAD DQE     ++ +LKT+DGI+RLALY SSIGRF NALGA IYPIYGQGELP AFCRR
Sbjct: 245 MADCDQENTGGANKDLLKTKDGIDRLALYQSSIGRFTNALGAFIYPIYGQGELPPAFCRR 304

Query: 289 AAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQ 348
           AAVKGC+YVLRMPV++LL D+N+G+YKG+RLASGQ+I S KLVLDPSFTVP   +S    
Sbjct: 305 AAVKGCIYVLRMPVVALLMDKNNGNYKGIRLASGQEIYSQKLVLDPSFTVP---SSPSDP 361

Query: 349 LQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGN 408
           L ESF   S+ D K KVAR ICIT+ SLKPD SNFL ++PPRSL+PEQ TSIR LQ+GG+
Sbjct: 362 LHESFCFLSVRDVKQKVARAICITKCSLKPDTSNFLAVYPPRSLYPEQSTSIRALQMGGS 421

Query: 409 LAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEEAKPT 468
           LAVCP  MF+LY SALCD+V+QGKKLL+ A++AL     +    + ST Q+E+  E +  
Sbjct: 422 LAVCPTNMFILYLSALCDDVHQGKKLLNTAMNALLSSTDSENPESCSTGQTENT-EVQSM 480

Query: 469 LLWSALYIQDLS 480
           LLWSALYIQ+L+
Sbjct: 481 LLWSALYIQELT 492

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147798203|emb|CAN62777.1| hypothetical protein VITISV_019372 [Vitis vinifera]

 Score =  589 bits (1518), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 322/562 (57%), Positives = 384/562 (68%), Gaps = 93/562 (16%)

Query: 12  VPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTH 71
            P YPPIEPT FDLIV+GTGLP+SVI+AAAS++GKSVLHLD N FYGSHFSSL++ + + 
Sbjct: 4   TPSYPPIEPTDFDLIVVGTGLPQSVIAAAASSAGKSVLHLDSNSFYGSHFSSLNLDEFSS 63

Query: 72  FLNSHST--------PSSVCPD------------PLYSDVEISNYASRLLSQHPRNFNLD 111
           FL S S         PSSV  D            P+YSDVEI++++S  L +H R FNLD
Sbjct: 64  FLTSQSAVYSSHPNPPSSVTADAAEYVALDLKTRPMYSDVEITSHSSDPL-EHSRKFNLD 122

Query: 112 VSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLG 171
           VSGPRVLFCAD AVDLMLKSGAS YLEFKSIDA+F+ DAD +  +VPDSRAAIFKD+SL 
Sbjct: 123 VSGPRVLFCADAAVDLMLKSGASQYLEFKSIDASFVCDADGRFSTVPDSRAAIFKDRSLS 182

Query: 172 LMEKNQLMRFFKLVQGHLSLDESEEN--NVRISEEDLDSPFAEFLTKMKLPHKIKS---- 225
           L EKNQLMRFFKL+QGHL+  +  EN  N RISE+DL+SPF EFL KM+LP KIKS    
Sbjct: 183 LTEKNQLMRFFKLIQGHLAASDEAENDSNARISEDDLESPFVEFLNKMRLPPKIKSYRSH 242

Query: 226 ----------------------------IVLYAIAMADYDQ---EVSEYVLKTRDGINRL 254
                                       ++LYAIAMADYDQ   EV + VL T+ GI+RL
Sbjct: 243 RPSLSFYANSLLGMYKMQLKTMRDVSLKMILYAIAMADYDQDSIEVCKDVLDTKIGIDRL 302

Query: 255 ALYNSSIG----------------------------------RFQNALGALIYPIYGQGE 280
           ALY+SS+G                                  +F NALGALIYPIYGQGE
Sbjct: 303 ALYHSSVGSQGRRQVCVDVGFDXGGFFGLIFKVHLYKSQNIRKFPNALGALIYPIYGQGE 362

Query: 281 LPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPG 340
           L QAFCRRAAVKGC+YVLRMPVI+LL ++ SG  KGVRLASGQDI S KL++DPSF VP 
Sbjct: 363 LTQAFCRRAAVKGCIYVLRMPVIALLMEKESGHCKGVRLASGQDIFSQKLLVDPSFIVPV 422

Query: 341 SLASSHQQ-LQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTS 399
            +A S    + ES Q  +L   K KVARGICI +SSLKPD+SNF+ ++PPRSL+PEQ  +
Sbjct: 423 PVAPSQPDCMPESSQVINLVYAKQKVARGICIMKSSLKPDVSNFVFVYPPRSLYPEQAMA 482

Query: 400 IRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQS 459
           IR +Q+G NL VCP GMFVLY S LC++  QGK+LL AA+ +L  L V+G   NSS+  S
Sbjct: 483 IRAVQIGSNLGVCPSGMFVLYLSTLCNDATQGKELLQAAIKSLFTLPVSGNPENSSSVHS 542

Query: 460 EDMEEAKPTLLWSALYIQDLSL 481
           E+MEE KPTLLWSALY Q+L +
Sbjct: 543 ENMEEVKPTLLWSALYTQELVM 564

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496561|ref|XP_003517135.1| PREDICTED: rab proteins geranylgeranyltransferase component A-like [Glycine max]

 Score =  568 bits (1465), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 297/490 (60%), Positives = 368/490 (75%), Gaps = 27/490 (5%)

Query: 15  YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLN 74
           YPPI+P  FDLI++GT L ESVI+AAASA GK++LHLDPN FYGSHF+SLS+ DLT +L 
Sbjct: 10  YPPIDPVNFDLIIVGTALSESVIAAAASAVGKTILHLDPNSFYGSHFASLSLHDLTSYLT 69

Query: 75  S-HSTPS----------------SVCPDPLYSDVEISNY-ASRLLSQHPRNFNLDVSGPR 116
           S HS PS                 +   PL +D E + Y  S  LS++ R FN+D+ GPR
Sbjct: 70  SPHSLPSAATAAASSDSDDIVVVDLVHQPLCTDAETATYDESAFLSENSRKFNIDLGGPR 129

Query: 117 VLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKN 176
            LFCAD  +DL++KSGA+ YLEFK ID +F+ +A+A L +VPDSR AIF+DK L L EKN
Sbjct: 130 ALFCADKTIDLLMKSGAAQYLEFKGIDESFVYEANAGLANVPDSRGAIFRDKKLSLKEKN 189

Query: 177 QLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADY 236
           QLMRFFKLVQ HL  D+++E   +I +EDL+ PF  FL KMKLP KIKSI+LYAIAM DY
Sbjct: 190 QLMRFFKLVQQHL--DDTQEE--KIPKEDLEIPFVSFLEKMKLPPKIKSILLYAIAMLDY 245

Query: 237 DQ---EVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKG 293
           DQ   EV E +LKT+DGI+ LA Y+SS+GRF NA GAL+YPIYG+GELPQAFCRRAAVKG
Sbjct: 246 DQDNNEVCEELLKTKDGIDCLAQYSSSVGRFPNAPGALLYPIYGEGELPQAFCRRAAVKG 305

Query: 294 CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQL-QES 352
           C+YVLRMPV+SLL D+ +GSYKGVRLASGQD+ SH+L+LDPSFT+P  L+ S      E 
Sbjct: 306 CIYVLRMPVVSLLMDKVTGSYKGVRLASGQDLYSHQLILDPSFTIPSPLSLSLGDFPSER 365

Query: 353 FQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVC 412
            Q  S  D KG VARGICITRSS+KPD+S+  V++PPRSL+PEQVTSI+ LQ+G NLAVC
Sbjct: 366 LQMLSQRDIKGMVARGICITRSSIKPDVSSCSVVYPPRSLYPEQVTSIKALQIGSNLAVC 425

Query: 413 PLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEEAKPTLLWS 472
           P G F+LY S LC++ ++GKKLL AA++AL  L V+G + +  + QS D E+ KP +LWS
Sbjct: 426 PAGTFILYLSTLCNDADEGKKLLKAAMNALLTLPVSGNSESIPSVQS-DSEDIKPIVLWS 484

Query: 473 ALYIQDLSLS 482
           A YIQ L +S
Sbjct: 485 AFYIQKLIMS 494

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538383|ref|XP_003537683.1| PREDICTED: rab proteins geranylgeranyltransferase component A-like [Glycine max]

 Score =  567 bits (1460), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 292/485 (60%), Positives = 368/485 (75%), Gaps = 25/485 (5%)

Query: 15  YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLN 74
           YPPI+P  FDLI++GT L ESVI+AAASA GK++LHLDPN FYGSHF+SLS+ DLT +L+
Sbjct: 10  YPPIDPVNFDLIIVGTALSESVIAAAASAVGKTILHLDPNSFYGSHFASLSLHDLTSYLS 69

Query: 75  S-HSTPSSVCP--------------DPLYSDVEISNY-ASRLLSQHPRNFNLDVSGPRVL 118
           S HS PS+                  PL SD EI+ Y  S  LS++ R F++D+ GP+ L
Sbjct: 70  SPHSLPSAAATTTDSDDVVVIDFVQQPLCSDAEIATYDESAFLSENSRKFSIDLGGPKAL 129

Query: 119 FCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL 178
           FCAD  +DL++KSGA+ YLEFK ID +F+ +A+A L +VPDSR +IF+DK L L EKNQL
Sbjct: 130 FCADKTIDLLMKSGAAQYLEFKGIDESFVYEANAGLANVPDSRGSIFRDKKLSLKEKNQL 189

Query: 179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQ 238
           MRFFKLVQ HL  D+++E   +I EEDL+  F  FL KMKLP KIKSI+LYAIAM DYDQ
Sbjct: 190 MRFFKLVQQHL--DDTQEE--KIPEEDLEIAFVSFLEKMKLPPKIKSILLYAIAMLDYDQ 245

Query: 239 EVSEY---VLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCL 295
           + +E    +LKT+DGI+ LALY+SS+GRF NA GAL+YPIYG+GELPQAFCRRAAVKGC+
Sbjct: 246 DNNEVCIELLKTKDGIDSLALYSSSVGRFPNAPGALLYPIYGEGELPQAFCRRAAVKGCI 305

Query: 296 YVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQL-QESFQ 354
           YVLRM V+SLL D+ +GSYKGVRLASGQD+ SH+L+LDPSF +P  L+SS +    E  Q
Sbjct: 306 YVLRMSVVSLLMDKVTGSYKGVRLASGQDLYSHQLILDPSFMIPSPLSSSPRDFPSEKLQ 365

Query: 355 AFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPL 414
                D KG VARGICITRSS+KPD+SN  V++PPRSL+PEQ+TSI+ LQ+G NLAVCP 
Sbjct: 366 MLGQRDIKGMVARGICITRSSIKPDVSNCSVVYPPRSLYPEQLTSIKALQIGSNLAVCPA 425

Query: 415 GMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEEAKPTLLWSAL 474
           G F+LYFS +C++ ++GKKLL AA++AL  L V+G + +  + QS D E+ KP +LWSA 
Sbjct: 426 GTFILYFSTMCNDADEGKKLLKAAMNALLTLPVSGNSESIPSVQS-DSEDIKPIVLWSAF 484

Query: 475 YIQDL 479
           YIQ L
Sbjct: 485 YIQKL 489

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357484143|ref|XP_003612358.1| Rab proteins geranylgeranyltransferase component A [Medicago truncatula] gi|355513693|gb|AES95316.1| Rab proteins geranylgeranyltransferase component A [Medicago truncatula]

 Score =  562 bits (1449), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 286/492 (58%), Positives = 362/492 (73%), Gaps = 30/492 (6%)

Query: 14  PYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFL 73
           PYPPI+P  FDLI++GTGL ES+ISAAASA GK++LHLDPNPFYGSHF+SLS  DL   L
Sbjct: 9   PYPPIDPINFDLIIVGTGLSESIISAAASAVGKTILHLDPNPFYGSHFASLSFEDLISHL 68

Query: 74  NS----------------HSTPSSVCPDPLYSDVEISN----YASRLLSQHPRNFNLDVS 113
           NS                  T  ++    ++SD E ++      S+ L ++ R FNLD++
Sbjct: 69  NSPPKYITATATATTDNSDYTTVNLIQQTIFSDAEFNSCNSIEESQFLRENSRKFNLDLA 128

Query: 114 GPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLM 173
           GPR LF AD  +DL+LKSGA+ YLEFK IDA+ + + +  L +VPDSR AIF+DK+L L 
Sbjct: 129 GPRALFSADKTIDLLLKSGAAQYLEFKGIDASLVYNTNEGLVNVPDSRGAIFRDKNLSLK 188

Query: 174 EKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAM 233
           EKNQLM+FFKLVQ HL  +E E    +ISEED++S F  +L K+ LP KIK+I+LYAIAM
Sbjct: 189 EKNQLMKFFKLVQQHLGGNEDE----KISEEDMESSFVSYLEKLGLPSKIKAILLYAIAM 244

Query: 234 ADYDQE---VSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAA 290
            D+DQE   V + +LKT+DGI+RLA Y+SS+GR+ NA GAL+YPIYG+GELPQAFCRRAA
Sbjct: 245 VDFDQENGGVCKDLLKTKDGIDRLAQYSSSVGRYPNAPGALLYPIYGEGELPQAFCRRAA 304

Query: 291 VKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQ 350
           VKGC+YVLRMPVISLL D+ +GSYKGVRL+SGQD+ SHKL+LDPSFT+P + + S +   
Sbjct: 305 VKGCIYVLRMPVISLLIDKVTGSYKGVRLSSGQDLYSHKLILDPSFTIPSTPSLSPKDF- 363

Query: 351 ESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLA 410
            S Q  S  D KG VARGICITRSS+KPD+SN  V++PPRSL+P+QVTS+R LQ+G NLA
Sbjct: 364 -SLQMLSHVDIKGMVARGICITRSSIKPDVSNCSVVYPPRSLYPDQVTSVRALQIGSNLA 422

Query: 411 VCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEEAKPTLL 470
           VCP   FVLYFS LC++ N+G KLL A+++AL    V+G   +S   QS   E+ KP +L
Sbjct: 423 VCPADTFVLYFSTLCNDANEGMKLLKASMNALLTPPVSGNTESSPNVQSGS-EDKKPVVL 481

Query: 471 WSALYIQDLSLS 482
           WSA YIQ L+ S
Sbjct: 482 WSAFYIQKLTSS 493

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456881|ref|XP_004146177.1| PREDICTED: rab proteins geranylgeranyltransferase component A 1-like [Cucumis sativus]

 Score =  561 bits (1445), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 286/491 (58%), Positives = 365/491 (74%), Gaps = 29/491 (5%)

Query: 15  YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLN 74
           +P I+P+ FDLIV+GTGLP+S+++AAASASGK+VLHLDPNP+YG HF++L + DLT FLN
Sbjct: 7   HPLIDPSTFDLIVVGTGLPQSILAAAASASGKTVLHLDPNPYYGGHFATLPLHDLTSFLN 66

Query: 75  SHSTPSSVCPDP-------------------LYSDVEISNYASRLLSQHPRNFNLDVSGP 115
           S S P  + P P                   LYSDVEIS+YA  +L +H R FN+D++GP
Sbjct: 67  SASAP--LLPSPPLASYDNQDYVSVDLQTRSLYSDVEISSYAPEVLQEHARKFNIDLAGP 124

Query: 116 RVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEK 175
           RVLFCAD  +D +LK G + YLEFKSIDA+++ D + KL +VP SRAAIFKDKSL L EK
Sbjct: 125 RVLFCADKCIDAVLKVGVNQYLEFKSIDASYLWDQNGKLVNVPGSRAAIFKDKSLSLTEK 184

Query: 176 NQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMAD 235
           NQLMRFFKLVQ HL   E  E++ +IS+EDLD+PF++FL K++LP K+KSI+LYAI+MAD
Sbjct: 185 NQLMRFFKLVQKHLDPAEDGESS-KISQEDLDTPFSDFLNKLRLPQKMKSIILYAISMAD 243

Query: 236 YDQ---EVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVK 292
            DQ   ++ +  L T++GI RLALY++SIGRFQNA GAL+YPIYGQGEL QAFCRRAAVK
Sbjct: 244 SDQNDNDIGQNRLLTKEGIARLALYHTSIGRFQNAQGALLYPIYGQGELSQAFCRRAAVK 303

Query: 293 GCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQES 352
           GCLYVLRMPV++LL D+++  YKGVRLASGQDI S +LVLDP F VP     S     ES
Sbjct: 304 GCLYVLRMPVVALLKDKSNEQYKGVRLASGQDIFSQQLVLDPCFIVPQLFKLS----LES 359

Query: 353 FQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVC 412
            Q  S  D   KVARGICIT+ S+  D+ N L+++PP++LFPEQV+S+RVLQ+GGNLAVC
Sbjct: 360 LQDVSSRDVNRKVARGICITKHSIVSDVKNCLLVYPPKTLFPEQVSSVRVLQIGGNLAVC 419

Query: 413 PLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEEAKPTLLWS 472
           P  MFV+Y S LCD  NQGK+++ AA++++  L V+    +SS  Q  + E     LLWS
Sbjct: 420 PEDMFVIYISTLCDSANQGKEMVRAAMNSITLLFVSDCPDSSSVDQDTNAEGKDLDLLWS 479

Query: 473 ALYIQDLSLSH 483
           ALY+Q+ S+  
Sbjct: 480 ALYVQESSVGQ 490

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388517443|gb|AFK46783.1| unknown [Medicago truncatula]

 Score =  561 bits (1445), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 285/492 (57%), Positives = 361/492 (73%), Gaps = 30/492 (6%)

Query: 14  PYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFL 73
           PYPPI+P  FDLI++GTGL ES+ISAAASA GK++LHLDPNPFYGSHF+SLS  DL   L
Sbjct: 9   PYPPIDPINFDLIIVGTGLSESIISAAASAVGKTILHLDPNPFYGSHFASLSFEDLISHL 68

Query: 74  NS----------------HSTPSSVCPDPLYSDVEISN----YASRLLSQHPRNFNLDVS 113
           NS                  T  ++    ++SD E ++      S+ L ++ R FNLD++
Sbjct: 69  NSPPKYITATATATTDNSDYTTVNLIQQTIFSDAEFNSCNSIEESQFLRENSRKFNLDLA 128

Query: 114 GPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLM 173
           GPR LF AD  +DL+LKSGA+ YLEFK ID + + + +  L +VPDSR AIF+DK+L L 
Sbjct: 129 GPRALFSADKTIDLLLKSGAAQYLEFKGIDVSLVYNTNEGLVNVPDSRGAIFRDKNLSLK 188

Query: 174 EKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAM 233
           EKNQLM+FFKLVQ HL  +E E    +ISEED++S F  +L K+ LP KIK+I+LYAIAM
Sbjct: 189 EKNQLMKFFKLVQQHLGGNEDE----KISEEDMESSFVSYLEKLGLPSKIKAILLYAIAM 244

Query: 234 ADYDQE---VSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAA 290
            D+DQE   V + +LKT+DGI+RLA Y+SS+GR+ NA GAL+YPIYG+GELPQAFCRRAA
Sbjct: 245 VDFDQENGGVCKDLLKTKDGIDRLAQYSSSVGRYPNAPGALLYPIYGEGELPQAFCRRAA 304

Query: 291 VKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQ 350
           VKGC+YVLRMPVISLL D+ +GSYKGVRL+SGQD+ SHKL+LDPSFT+P + + S +   
Sbjct: 305 VKGCIYVLRMPVISLLIDKVTGSYKGVRLSSGQDLYSHKLILDPSFTIPSTPSLSPKDF- 363

Query: 351 ESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLA 410
            S Q  S  D KG VARGICITRSS+KPD+SN  V++PPRSL+P+QVTS+R LQ+G NLA
Sbjct: 364 -SLQMLSHVDIKGMVARGICITRSSIKPDVSNCSVVYPPRSLYPDQVTSVRALQIGSNLA 422

Query: 411 VCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEEAKPTLL 470
           VCP   FVLYFS LC++ N+G KLL A+++AL    V+G   +S   QS   E+ KP +L
Sbjct: 423 VCPADTFVLYFSTLCNDANEGMKLLKASMNALLTPPVSGNTESSPNVQSGS-EDKKPVVL 481

Query: 471 WSALYIQDLSLS 482
           WSA YIQ L+ S
Sbjct: 482 WSAFYIQKLTSS 493

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22330883|ref|NP_187306.2| Rab escort protein [Arabidopsis thaliana] gi|51317418|gb|AAN03631.2|AF409086_1 Rab escort protein [Arabidopsis thaliana] gi|332640889|gb|AEE74410.1| Rab escort protein [Arabidopsis thaliana]

 Score =  552 bits (1422), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 290/496 (58%), Positives = 373/496 (75%), Gaps = 29/496 (5%)

Query: 12  VPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTH 71
           +PPYPP++P+ +DLIV+GTG+ ESV++AAAS+SG SVLHLDPNPFYGSHF+SLS+ DLT 
Sbjct: 4   IPPYPPLDPSNYDLIVVGTGVSESVLAAAASSSGSSVLHLDPNPFYGSHFASLSLPDLTS 63

Query: 72  FLNSHSTPS--------------------SVCPDPLYSDVEISNYASRLLSQHPRNFNLD 111
           FL+S+S                        +    LYS VEIS++ S +L +H R FN+D
Sbjct: 64  FLHSNSVSPPPSPSSPPLPPSNNHDFISVDLVNRSLYSSVEISSFESEILEEHSRRFNVD 123

Query: 112 VSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLG 171
           ++GPRV+FCAD +++LMLKSGA++Y+EFKSIDA+F+ D+  +L +VPDSRAAIFKDKSL 
Sbjct: 124 LAGPRVVFCADESINLMLKSGANNYVEFKSIDASFVGDSSGELRNVPDSRAAIFKDKSLT 183

Query: 172 LMEKNQLMRFFKLVQGHL--SLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLY 229
           L+EKNQLM+FFKLVQ HL  S ++ +   V+ISEED++SPF +FL+KM+LP KIKSI+LY
Sbjct: 184 LLEKNQLMKFFKLVQSHLASSTEKDDSTTVKISEEDMESPFVDFLSKMRLPPKIKSIILY 243

Query: 230 AIAMADYDQEVSE---YVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFC 286
           AIAM DYDQ+ +E   ++LKT++GI+RLALY +S+GRF NALGALIYPIYGQGELPQAFC
Sbjct: 244 AIAMLDYDQDNTETCRHLLKTKEGIDRLALYITSMGRFSNALGALIYPIYGQGELPQAFC 303

Query: 287 RRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVP-GSLASS 345
           RRAAVKGC+YVLRMP+ +LL D+ +G YKGVRLASGQ+I S KL+LDP  TV   SL+S 
Sbjct: 304 RRAAVKGCIYVLRMPITALLLDKETGGYKGVRLASGQEIFSQKLILDPCVTVGLESLSSL 363

Query: 346 HQQLQESFQAFSLSD--NKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVL 403
             Q  E+          NK K+ARG+C+ R S+K ++SN LV++PP+SLFPEQ+T+IRVL
Sbjct: 364 TDQQNETLSVLVPKSMINKEKIARGVCVIRGSVKANVSNALVVYPPKSLFPEQLTAIRVL 423

Query: 404 QLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDME 463
           QLG  LAVCP  M VLY S LCD  +QG K L +A+S L  L V     + S  ++ D  
Sbjct: 424 QLGSGLAVCPADMHVLYLSTLCDNDDQGIKALLSAMSNLISLPVPENRQSDSVVEN-DTS 482

Query: 464 EAKPTLLWSALYIQDL 479
           E KP LLW ALY+Q+L
Sbjct: 483 ETKPILLWRALYVQEL 498

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	486
TAIR|locus:2084289	563	REP "AT3G06540" [Arabidopsis t	0.806	0.696	0.605	1.6e-145
FB|FBgn0026378	511	Rep "Rab escort protein" [Dros	0.611	0.581	0.337	1.6e-38
UNIPROTKB|P24386	653	CHM "Rab proteins geranylgeran	0.565	0.421	0.298	5.6e-37
MGI|MGI:101913	621	Chml "choroideremia-like" [Mus	0.557	0.436	0.301	2.3e-36
UNIPROTKB|E2RKG1	652	CHM "Uncharacterized protein"	0.563	0.420	0.307	5e-36
MGI|MGI:892979	665	Chm "choroidermia" [Mus muscul	0.567	0.415	0.295	1.2e-35
DICTYBASE|DDB_G0280143	661	DDB_G0280143 "Rab escort prote	0.656	0.482	0.275	5.7e-35
UNIPROTKB|K7GR66	653	CHM "Uncharacterized protein"	0.567	0.422	0.280	1.1e-34
UNIPROTKB|F1NEX6	656	CHM "Uncharacterized protein"	0.419	0.310	0.328	2.1e-34
RGD|2340	650	Chm "choroideremia (Rab escort	0.569	0.426	0.290	1.2e-33

TAIR|locus:2084289 REP "AT3G06540" [Arabidopsis thaliana (taxid:3702)]

 Score = 1219 (434.2 bits), Expect = 1.6e-145, Sum P(2) = 1.6e-145
 Identities = 243/401 (60%), Positives = 311/401 (77%)

Query:    87 LYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATF 146
             LYS VEIS++ S +L +H R FN+D++GPRV+FCAD +++LMLKSGA++Y+EFKSIDA+F
Sbjct:    99 LYSSVEISSFESEILEEHSRRFNVDLAGPRVVFCADESINLMLKSGANNYVEFKSIDASF 158

Query:   147 MLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHL--SLDESEENNVRISEE 204
             + D+  +L +VPDSRAAIFKDKSL L+EKNQLM+FFKLVQ HL  S ++ +   V+ISEE
Sbjct:   159 VGDSSGELRNVPDSRAAIFKDKSLTLLEKNQLMKFFKLVQSHLASSTEKDDSTTVKISEE 218

Query:   205 DLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSE---YVLKTRDGINRLALYNSSI 261
             D++SPF +FL+KM+LP KIKSI+LYAIAM DYDQ+ +E   ++LKT++GI+RLALY +S+
Sbjct:   219 DMESPFVDFLSKMRLPPKIKSIILYAIAMLDYDQDNTETCRHLLKTKEGIDRLALYITSM 278

Query:   262 GRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS 321
             GRF NALGALIYPIYGQGELPQAFCRRAAVKGC+YVLRMP+ +LL D+ +G YKGVRLAS
Sbjct:   279 GRFSNALGALIYPIYGQGELPQAFCRRAAVKGCIYVLRMPITALLLDKETGGYKGVRLAS 338

Query:   322 GQDILSHKLVLDPSFTVP-GSLASSHQQLQESFQAFSLSD--NKGKVARGICITRSSLKP 378
             GQ+I S KL+LDP  TV   SL+S   Q  E+          NK K+ARG+C+ R S+K 
Sbjct:   339 GQEIFSQKLILDPCVTVGLESLSSLTDQQNETLSVLVPKSMINKEKIARGVCVIRGSVKA 398

Query:   379 DLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAA 438
             ++SN LV++PP+SLFPEQ+T+IRVLQLG  LAVCP  M VLY S LCD  +QG K L +A
Sbjct:   399 NVSNALVVYPPKSLFPEQLTAIRVLQLGSGLAVCPADMHVLYLSTLCDNDDQGIKALLSA 458

Query:   439 LSALQKLLVTGTAGNSSTAQSEDMEEAKPTLLWSALYIQDL 479
             +S L  L V     + S  ++ D  E KP LLW ALY+Q+L
Sbjct:   459 MSNLISLPVPENRQSDSVVEN-DTSETKPILLWRALYVQEL 498

GO:0005093 "Rab GDP-dissociation inhibitor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0015031 "protein transport" evidence=ISS

GO:0017137 "Rab GTPase binding" evidence=IDA

GO:2000541 "positive regulation of protein geranylgeranylation" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

FB|FBgn0026378 Rep "Rab escort protein" [Drosophila melanogaster (taxid:7227)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 109/323 (33%), Positives = 167/323 (51%)

Query:    23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
             FDL+VIGTG  ES I+AA S  GKSVLHLD N +YG  +SS S+  L   L+    P S 
Sbjct:     9 FDLVVIGTGFTESCIAAAGSRIGKSVLHLDSNEYYGDVWSSFSMDALCARLDQEVEPHSA 68

Query:    83 CPDPLY--------SDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGAS 134
               +  Y        S+ +  ++    +    R F+LD+  PR+L+ A   V L++KS   
Sbjct:    69 LRNARYTWHSMEKESETDAQSWNRDSVLAKSRRFSLDLC-PRILYAAGELVQLLIKSNIC 127

Query:   135 HYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDES 194
              Y EF+++D   M   + ++ SVP SR+ +F  K+L ++EK  LM+F      +   D+ 
Sbjct:   128 RYAEFRAVDHVCMRH-NGEIVSVPCSRSDVFNTKTLTIVEKRLLMKFLTACNDY-GEDKC 185

Query:   195 EENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRL 254
              E+++    E     F E+L   ++  KI S V+ AIAM        E       G+ R 
Sbjct:   186 NEDSL----EFRGRTFLEYLQAQRVTEKISSCVMQAIAMCGPSTSFEE-------GMQRT 234

Query:   255 ALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSY 314
               +  S+GR+ N     ++P+YG GELPQ FCR  AV G +Y L+  V  +  D NS  +
Sbjct:   235 QRFLGSLGRYGNT--PFLFPMYGCGELPQCFCRLCAVYGGIYCLKRAVDDIALDSNSNEF 292

Query:   315 KGVRLASGQDILSHKLVLDPSFT 337
               +  ++G+ + +  +V  P +T
Sbjct:   293 --LLSSAGKTLRAKNVVSAPGYT 313

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=ISS

GO:0017137 "Rab GTPase binding" evidence=ISS;NAS

GO:0005968 "Rab-protein geranylgeranyltransferase complex" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0000922 "spindle pole" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0016020 "membrane" evidence=ISS

GO:0005818 "aster" evidence=IDA

GO:0007269 "neurotransmitter secretion" evidence=NAS

GO:0016192 "vesicle-mediated transport" evidence=NAS

GO:0008021 "synaptic vesicle" evidence=NAS

UNIPROTKB|P24386 CHM "Rab proteins geranylgeranyltransferase component A 1" [Homo sapiens (taxid:9606)]

 Score = 295 (108.9 bits), Expect = 5.6e-37, Sum P(2) = 5.6e-37
 Identities = 92/308 (29%), Positives = 149/308 (48%)

Query:   116 RVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEK 175
             ++L+     +DL++KS  S Y EFK+I    +   + ++  VP SRA +F  K L ++EK
Sbjct:   234 KLLYSRGLLIDLLIKSNVSRYAEFKNI-TRILAFREGRVEQVPCSRADVFNSKQLTMVEK 292

Query:   176 NQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMAD 235
               LM+F      +    E   +  +  EE     F E+L   KL   ++ IV+++IAM  
Sbjct:   293 RMLMKFLTFCMEY----EKYPDEYKGYEE---ITFYEYLKTQKLTPNLQYIVMHSIAMT- 344

Query:   236 YDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCL 295
                  SE    T DG+     +   +GR+ N     ++P+YGQGELPQ FCR  AV G +
Sbjct:   345 -----SETASSTIDGLKATKNFLHCLGRYGNT--PFLFPLYGQGELPQCFCRMCAVFGGI 397

Query:   296 YVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQA 355
             Y LR  V  L+ D+ S   K +    GQ I+S   +++ S+  P ++ S  Q  Q     
Sbjct:   398 YCLRHSVQCLVVDKESRKCKAIIDQFGQRIISEHFLVEDSY-FPENMCSRVQYRQ----- 451

Query:   356 FSLSDNKGKVARGICIT-RSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPL 414
                      ++R + IT RS LK D    + I    +  P    ++RV++L  +   C  
Sbjct:   452 ---------ISRAVLITDRSVLKTDSDQQISILTVPAEEPGTF-AVRVIELCSSTMTCMK 501

Query:   415 GMFVLYFS 422
             G ++++ +
Sbjct:   502 GTYLVHLT 509

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

GO:0005968 "Rab-protein geranylgeranyltransferase complex" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

GO:0050896 "response to stimulus" evidence=IEA

GO:0001568 "blood vessel development" evidence=IEA

GO:0018344 "protein geranylgeranylation" evidence=TAS

MGI|MGI:101913 Chml "choroideremia-like" [Mus musculus (taxid:10090)]

 Score = 308 (113.5 bits), Expect = 2.3e-36, Sum P(2) = 2.3e-36
 Identities = 93/308 (30%), Positives = 154/308 (50%)

Query:   118 LFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQ 177
             L+     +DL++KS  S Y EFK++    +   + K+  VP SRA +F  K L ++EK  
Sbjct:   237 LYSQGSLIDLLIKSNVSRYAEFKNV-TRILAFWEGKVEQVPCSRADVFNSKELSMVEKRM 295

Query:   178 LMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYD 237
             LM+F         LD  + ++    ++     F+++L   KL   ++  +L++IAM    
Sbjct:   296 LMKFLTFC-----LDYEQHSDEY--QDFKQCSFSDYLKTKKLTPNLQHFILHSIAMT--- 345

Query:   238 QEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYV 297
                SE    T DG+     +   +GRF N     I+P+YG GE+PQ FCR  AV G +Y 
Sbjct:   346 ---SESSCTTLDGLQATKNFLQCLGRFGNT--PFIFPLYGHGEIPQCFCRMCAVFGGVYC 400

Query:   298 LRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFS 357
             LR  V  L+ D++SG  KG+  A GQ I ++  +++ S+ +P    S+ Q  Q       
Sbjct:   401 LRHKVQCLVVDKDSGRCKGIIDAFGQRISANYFIVEDSY-LPKETCSNVQYKQ------- 452

Query:   358 LSDNKGKVARGICIT-RSSLKPDLSN--FLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPL 414
                    ++R + IT +S LK D      +++ PP  L P   TS+RV++L  +   C  
Sbjct:   453 -------ISRAVLITDQSILKTDSDQQISILVVPP--LEPG-TTSVRVMELCSSTMTCMK 502

Query:   415 GMFVLYFS 422
               ++++ +
Sbjct:   503 DSYLVHLT 510

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005968 "Rab-protein geranylgeranyltransferase complex" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|E2RKG1 CHM "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 299 (110.3 bits), Expect = 5.0e-36, Sum P(2) = 5.0e-36
 Identities = 95/309 (30%), Positives = 148/309 (47%)

Query:   116 RVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEK 175
             ++L+     +DL++KS  S Y EFK+I    +   + ++  VP SRA +F  K L ++EK
Sbjct:   233 KLLYSRGLLIDLLIKSNVSRYAEFKNI-TRILAFREGRVEQVPCSRADVFNSKQLTMVEK 291

Query:   176 NQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMAD 235
               LM+F      +    E   +  +  EE     F+E+L   KL   ++  VL++IAM  
Sbjct:   292 RMLMKFLTFCMEY----EKHPDEYKAYEE---ITFSEYLKTQKLTPNLQYFVLHSIAMT- 343

Query:   236 YDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCL 295
                  SE    T DG+     +   +GR+ N     ++P+YGQGELPQ FCR  AV G +
Sbjct:   344 -----SETASNTIDGLKATKNFLHCLGRYGNT--PFLFPLYGQGELPQCFCRMCAVFGGI 396

Query:   296 YVLRMPVISLLTDQNSGSYKGVRLASGQDILS-HKLVLDPSFTVPGSLASSHQQLQESFQ 354
             Y LR  V  L+ D+ S   K +    GQ I+S H LV D  F+       SH Q ++   
Sbjct:   397 YCLRHSVQCLVVDKESRKCKAIIDQFGQRIISKHFLVEDSYFS---ENTCSHVQYRQ--- 450

Query:   355 AFSLSDNKGKVARGICIT-RSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCP 413
                       ++R + IT RS LK D    + I       P    ++RV++L  +   C 
Sbjct:   451 ----------ISRSVLITDRSVLKTDSDQQISILTVPGEEPGTF-AVRVIELCSSTMTCM 499

Query:   414 LGMFVLYFS 422
              G ++++ +
Sbjct:   500 KGTYLVHLT 508

GO:0001568 "blood vessel development" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005968 "Rab-protein geranylgeranyltransferase complex" evidence=IEA

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

MGI|MGI:892979 Chm "choroidermia" [Mus musculus (taxid:10090)]

 Score = 294 (108.6 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
 Identities = 92/311 (29%), Positives = 150/311 (48%)

Query:   116 RVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEK 175
             ++L+     +DL++KS  S Y EFK+I    +   +  +  VP SRA +F  K L ++EK
Sbjct:   246 KLLYSRGLLIDLLIKSNVSRYAEFKNI-TRILAFREGTVEQVPCSRADVFNSKQLTMVEK 304

Query:   176 NQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMAD 235
               LM+F      +    E   +  +  EE   + F+E+L   KL   ++  VL++IAM  
Sbjct:   305 RMLMKFLTFCVEY----EDHPDEYKAYEE---TTFSEYLKTQKLTPNLQYFVLHSIAMT- 356

Query:   236 YDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCL 295
                  SE    T DG+     +   +GR+ N     ++P+YGQGELPQ FCR  AV G +
Sbjct:   357 -----SETTSSTVDGLKATKKFLQCLGRYGNT--PFLFPLYGQGELPQCFCRMCAVFGGI 409

Query:   296 YVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQA 355
             Y LR  V  L+ D+ S   K +    GQ I+S   V++ S+ +  +  S  Q  Q     
Sbjct:   410 YCLRHSVQCLVVDKESRKCKAIVDQFGQRIISKHFVIEDSY-LSENTCSGVQYRQ----- 463

Query:   356 FSLSDNKGKVARGICITRSS-LKPDLSNFLVIFPPRSLFPEQVT-SIRVLQLGGNLAVCP 413
                      ++R + IT  S LKPD    + I    +   E  + ++RV++L  +   C 
Sbjct:   464 ---------ISRAVLITDGSVLKPDSDQQVSILTVPA--EESGSFAVRVIELCSSTMTCM 512

Query:   414 LGMFVLYFSAL 424
              G ++++ + +
Sbjct:   513 KGTYLVHLTCM 523

GO:0001568 "blood vessel development" evidence=IMP

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005968 "Rab-protein geranylgeranyltransferase complex" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=ISO

DICTYBASE|DDB_G0280143 DDB_G0280143 "Rab escort protein (REP)" [Dictyostelium discoideum (taxid:44689)]

 Score = 321 (118.1 bits), Expect = 5.7e-35, Sum P(2) = 5.7e-35
 Identities = 95/345 (27%), Positives = 169/345 (48%)

Query:    91 VEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDA 150
             +++   + + L +  R F++D+S P +L+     V L++ S AS YLEFKS+D  ++   
Sbjct:   162 IDVPLVSDKSLEELGRLFSIDIS-PTLLYGRGALVKLLISSSASRYLEFKSLDQNYLF-T 219

Query:   151 DAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLV-----QGHLSLDESE-ENNVRISEE 204
             + K+  +P ++ +IFKD +  L EK  +M+F + +     +G   LD++E E + ++S  
Sbjct:   220 NGKVHEIPSTKGSIFKDSTFSLKEKRLIMKFMESIRELKKEGS-DLDDAEKEAHFKLSII 278

Query:   205 DLDSPFAEFLT---KMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSI 261
             +L   F  F+      K    ++S +LY +++   D E     L+T  GI  + LY SS+
Sbjct:   279 ELGKQFKSFIDYIKSFKFTQLVESFILYGLSLIHEDLE--SIPLET--GIESVFLYTSSL 334

Query:   262 GRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS 321
               +   +   + P YG G++PQAFCR  AV G  YVL   V S+  +Q +G  K +  + 
Sbjct:   335 LVY--GVSPFLIPYYGVGDIPQAFCRLCAVFGGSYVLGRTVDSIQFNQETGKVKSIICSE 392

Query:   322 GQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLS 381
             GQ I +   +  P +    +++SS   L            +   +R I I  S +    +
Sbjct:   393 GQTIQTTHFITSPKYL--NTISSSQNNL-----ILPQKTIRKTYSRFIGIIESKIIGTQN 445

Query:   382 NFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCD 426
             +  +  PP+S+   +   I +LQL            +++F+ L D
Sbjct:   446 DSFITIPPKSIGNNK-NVINILQLSSICVPYNKNKALIHFTTLAD 489

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=ISS

GO:0018344 "protein geranylgeranylation" evidence=ISS

GO:0017137 "Rab GTPase binding" evidence=ISS

GO:0005968 "Rab-protein geranylgeranyltransferase complex" evidence=ISS

UNIPROTKB|K7GR66 CHM "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 286 (105.7 bits), Expect = 1.1e-34, Sum P(2) = 1.1e-34
 Identities = 86/307 (28%), Positives = 147/307 (47%)

Query:   116 RVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEK 175
             ++L+     +DL++KS  S Y EFK+I    +   + ++  VP SRA +F  K L ++EK
Sbjct:   234 KLLYSRGLLIDLLIKSNVSRYAEFKNI-TRILAFREGRVEQVPCSRADVFNSKQLTMVEK 292

Query:   176 NQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMAD 235
               LM+F      +    E   +  +  EE     F+E+L   KL   ++  VL++IAM  
Sbjct:   293 RMLMKFLTFCMDY----EEYPDEYKAYEE---ISFSEYLKTQKLTPNLQYFVLHSIAMT- 344

Query:   236 YDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCL 295
                  SE    T DG+     +   +GR+ N     ++P+YGQGELPQ FCR  AV G +
Sbjct:   345 -----SETASSTIDGLKATQNFLHCLGRYGNT--PFLFPLYGQGELPQCFCRMCAVFGGI 397

Query:   296 YVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQA 355
             Y LR  V  L+ D+ SG  K +    GQ I++   +++ S+    +   S  Q ++  +A
Sbjct:   398 YCLRHSVQCLVVDKESGKCKAIIDHFGQRIIAKHFIVEDSYFSENTC--SRVQYRQISRA 455

Query:   356 FSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLG 415
               ++D          + +S+    +S   V       F     ++RV++L  +   C  G
Sbjct:   456 VLVTDKS--------VLKSNSDQQISILTVPADEPGAF-----AVRVIELCSSTMTCMKG 502

Query:   416 MFVLYFS 422
              ++++ +
Sbjct:   503 TYLVHLT 509

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005968 "Rab-protein geranylgeranyltransferase complex" evidence=IEA

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

UNIPROTKB|F1NEX6 CHM "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 277 (102.6 bits), Expect = 2.1e-34, Sum P(3) = 2.1e-34
 Identities = 73/222 (32%), Positives = 119/222 (53%)

Query:   116 RVLFCADHAVDLMLKSGASHYLEFKSIDATFMLD-ADAKLCSVPDSRAAIFKDKSLGLME 174
             ++L+     ++L++KS  S Y EFK+  AT +L   + K+  VP SRA +F  + L ++E
Sbjct:   230 KLLYSRGLLIELLIKSNVSRYAEFKN--ATRILAFREGKVEQVPCSRADVFNSRQLAMVE 287

Query:   175 KNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMA 234
             K  LM+F       L  ++  +      ++  +S FA+FL   KL   ++  +L++IAM 
Sbjct:   288 KRMLMKFLTFC---LEYEQHPDEY----QDYKNSTFAQFLKTRKLTPSLQHFILHSIAM- 339

Query:   235 DYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGC 294
                  VSE    T +G+     +   +GR+ N     ++P+YGQGE+PQ FCR  AV G 
Sbjct:   340 -----VSEKDCNTLEGLQATRKFLQCLGRYGNT--PFLFPLYGQGEIPQCFCRMCAVFGG 392

Query:   295 LYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSF 336
             +Y LR  V  L+ D+ SG  K V    GQ I ++  +++ S+
Sbjct:   393 IYCLRHSVQCLVVDKESGRCKAVVDHFGQRISANYFIVEDSY 434

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

GO:0005968 "Rab-protein geranylgeranyltransferase complex" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

RGD|2340 Chm "choroideremia (Rab escort protein 1)" [Rattus norvegicus (taxid:10116)]

 Score = 285 (105.4 bits), Expect = 1.2e-33, Sum P(2) = 1.2e-33
 Identities = 90/310 (29%), Positives = 146/310 (47%)

Query:   116 RVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEK 175
             ++L+     +DL++KS  S Y EFK+I    +   +  +  VP SRA +F  K L ++EK
Sbjct:   231 QLLYSRGLLIDLLIKSNVSRYAEFKNI-TRILAFREGTVEQVPCSRADVFNSKQLTMVEK 289

Query:   176 NQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMAD 235
               LM+F      +    E   +  R  E    + F+E+L   KL   ++  VL++IAM  
Sbjct:   290 RMLMKFLTFCVEY----EEHPDEYRAYE---GTTFSEYLKTQKLTPNLQYFVLHSIAMT- 341

Query:   236 YDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCL 295
                  SE    T DG+     +   +GR+ N     ++P+YGQGELPQ FCR  AV G +
Sbjct:   342 -----SETTSCTVDGLKATKKFLQCLGRYGNT--PFLFPLYGQGELPQCFCRMCAVFGGI 394

Query:   296 YVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQA 355
             Y LR  V  L+ D+ S   K V    GQ I+S   +++ S+    +   S  Q ++    
Sbjct:   395 YCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSENTC--SRVQYRQ---- 448

Query:   356 FSLSDNKGKVARGICITRSS-LKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPL 414
                      ++R + IT  S LK D    + I    +  P     +RV++L  +   C  
Sbjct:   449 ---------ISRAVLITDGSVLKTDADQQVSILAVPAEEPGSF-GVRVIELCSSTMTCMK 498

Query:   415 GMFVLYFSAL 424
             G ++++ + +
Sbjct:   499 GTYLVHLTCM 508

GO:0001568 "blood vessel development" evidence=IEA;ISO

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005968 "Rab-protein geranylgeranyltransferase complex" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.256.25.1 hypothetical protein (552 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	486
pfam00996	439	pfam00996, GDI, GDP dissociation inhibitor	5e-56
COG5044	434	COG5044, MRS6, RAB proteins geranylgeranyltransfer	9e-53
PTZ00363	443	PTZ00363, PTZ00363, rab-GDP dissociation inhibitor	5e-51

>gnl|CDD|216232 pfam00996, GDI, GDP dissociation inhibitor

 Score =  192 bits (490), Expect = 5e-56
 Identities = 120/473 (25%), Positives = 195/473 (41%), Gaps = 75/473 (15%)

Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADL-THFLNSHSTPSS 81
           +D+IV+GTGL E ++S   S  GK VLH+D N +YG   +SLS+  L   F      P S
Sbjct: 5   YDVIVLGTGLKECILSGLLSVDGKKVLHIDRNDYYGGESASLSLEQLYARFRGGEEKPPS 64

Query: 82  VCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKS 141
                                   R++N+D+  P+ L      V L++ +  + YLEFK+
Sbjct: 65  K-------------LGRS------RDWNVDLI-PKFLMANGELVKLLIHTDVTRYLEFKA 104

Query: 142 IDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRI 201
           ++ +++     K+  VP +         +G+ EK +  +F   VQ     DE +      
Sbjct: 105 VEGSYVYK-GGKIHKVPANEMEALSSPLMGIFEKRRFRKFLTYVQ---DYDEDDPK---- 156

Query: 202 SEEDLD---SPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN 258
           + + LD       E   K  L       + +A+A+   D  +++        + R+ LY+
Sbjct: 157 THDGLDPRKRTMLEVYKKFGLDENTIDFIGHALALYRDDDYLNQ---PALPTVERIKLYS 213

Query: 259 SSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVR 318
            S+ R+       +YP+YG GELPQ F R +A+ G  Y+L  PV  ++ D+N G   GV+
Sbjct: 214 ESLARYGK--SPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDEIVYDEN-GKVVGVK 270

Query: 319 LASGQDILSHKLVL-DPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK 377
             SG ++   K V+ DPS+  P  +                    G+V R ICI    + 
Sbjct: 271 --SGGEVARAKQVICDPSYF-PDKVRK-----------------VGQVIRAICILSHPIP 310

Query: 378 --PDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCD------EVN 429
              D  +  +I P   +  +  + I +        VCP G ++   S   +      E+ 
Sbjct: 311 NTNDAGSVQIIIPQNQVGRK--SDIYISCCSYAHNVCPKGKYIAIVSTTVETENPESELA 368

Query: 430 QGKKLLHA------ALSALQKLLVTGTAGNSSTAQSEDMEEAKPTLLWSALYI 476
            G  LL         +S L +    G+      +QS D      T     L I
Sbjct: 369 PGLDLLGPIDEKFVKISDLYEPTDDGSEDQIFISQSYDATTHFETTCNDVLDI 421

Length = 439

>gnl|CDD|227377 COG5044, MRS6, RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

 Score =  183 bits (467), Expect = 9e-53
 Identities = 116/418 (27%), Positives = 180/418 (43%), Gaps = 62/418 (14%)

Query: 17  PIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSH 76
             E T +D+I++GTGL ES++SAA S  GK+VLH+D N +YGS  +SL++  L  + +  
Sbjct: 1   MDEETLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLTLTQLEKYFD-- 58

Query: 77  STPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHY 136
                  P     D               R+ N+D+  P+ LF     + +++++G + Y
Sbjct: 59  --ECEKRPSKGGGD---------------RDLNIDLI-PKFLFANSELLKILIETGVTEY 100

Query: 137 LEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEE 196
           LEFK I  +F+     K+  VP + A IF    L L EK ++MRF K V  +       E
Sbjct: 101 LEFKQISGSFLYR-PGKIYKVPYNEAEIFTSPLLSLFEKRRVMRFLKWVSNY------AE 153

Query: 197 NNVRISEEDLDSPFAEFL-TKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLA 255
               + E        EFL  K  L    +  + + IA++  D ++       R+ + R+ 
Sbjct: 154 QKSTLQELYESKDTMEFLFEKFGLSGATEEFIGHGIALS-LDLDI-----PAREALERIL 207

Query: 256 LYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMP-VISLLTDQNSGSY 314
            Y  S G +  +    +YP YG GEL Q F R +AV G  Y+L         T       
Sbjct: 208 RYMRSFGDYGKS--PYLYPRYGLGELSQGFARSSAVYGGTYMLNQAIDEINETKDVETVD 265

Query: 315 KGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRS 374
           KG          + K++  P++       S                   ++ R ICI   
Sbjct: 266 KG-----SLTQKAGKIISSPTY---FREDSKSVGQFY------------RIIRAICILLV 305

Query: 375 SLKP---DLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVN 429
              P    L +  +IFPP SL  ++   I+V  LG    VCP G ++ Y S + +   
Sbjct: 306 HPVPFTTGLDSLQIIFPPFSL--KRKNDIQVAGLGSGSEVCPEGYYLAYISTIDETPT 361

Length = 434

>gnl|CDD|185577 PTZ00363, PTZ00363, rab-GDP dissociation inhibitor; Provisional

 Score =  179 bits (455), Expect = 5e-51
 Identities = 118/429 (27%), Positives = 196/429 (45%), Gaps = 59/429 (13%)

Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
           +D+IV GTGL E ++S   S +GK VLH+D NP+YG   +SL++  L        TP   
Sbjct: 5   YDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGETP--- 61

Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
            P+ L  +               R++N+D+  P+ +  +   V ++L +  + YLEFK I
Sbjct: 62  -PESLGRN---------------RDWNVDLI-PKFIMASGELVKILLHTDVTRYLEFKVI 104

Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
           D +++   + K+  VP +         +G  EKN+   F + V  +      +EN+    
Sbjct: 105 DGSYVYQKEGKIHKVPATDMEALSSPLMGFFEKNRCKNFLQYVSNY------DENDPETH 158

Query: 203 EE-DLDS-PFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260
           +  +L +   A+   K  L       V +A+A+   D  +++  ++T   + R+ LY  S
Sbjct: 159 KGLNLKTMTMAQLYKKFGLEDNTIDFVGHAVALYTNDDYLNKPAIET---VMRIKLYMDS 215

Query: 261 IGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320
           + R+  +    IYP+YG G LPQAF R  A+ G  Y+L  PV  ++ D+N G   GV+  
Sbjct: 216 LSRYGKS--PFIYPLYGLGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDEN-GKVCGVKSE 272

Query: 321 SGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDL 380
            G+      ++ DPS+  P  +                    GKV R ICI    + P+ 
Sbjct: 273 GGEVAKCKLVICDPSY-FPDKVKK-----------------VGKVIRCICILNHPI-PNT 313

Query: 381 SN---FLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHA 437
           +N     +I P + L   +   I ++ +  N  VCP G ++   S    E N  +K +  
Sbjct: 314 NNANSCQIIIPQKQL--GRKNDIYIMLVSSNHGVCPKGKYIAIISTTV-ETNNPEKEIEP 370

Query: 438 ALSALQKLL 446
           AL  L  + 
Sbjct: 371 ALKLLGPIE 379

Length = 443

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	486
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	100.0
KOG4405	547	consensus GDP dissociation inhibitor [Signal trans	100.0
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	100.0
KOG1439	440	consensus RAB proteins geranylgeranyltransferase c	100.0
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	100.0
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	99.96
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	99.95
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	99.95
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	99.95
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	99.94
PLN02576	496	protoporphyrinogen oxidase	99.93
PRK07233	434	hypothetical protein; Provisional	99.93
PRK12416	463	protoporphyrinogen oxidase; Provisional	99.92
PRK11883	451	protoporphyrinogen oxidase; Reviewed	99.92
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	99.91
PRK07208	479	hypothetical protein; Provisional	99.91
PLN02612	567	phytoene desaturase	99.91
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	99.91
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	99.88
PLN02487	569	zeta-carotene desaturase	99.87
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	99.87
PLN02268	435	probable polyamine oxidase	99.83
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	99.83
PLN02529	738	lysine-specific histone demethylase 1	99.82
PLN02676	487	polyamine oxidase	99.82
PLN02568	539	polyamine oxidase	99.8
PLN02328	808	lysine-specific histone demethylase 1 homolog	99.8
PLN03000	881	amine oxidase	99.78
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	99.78
PRK13977	576	myosin-cross-reactive antigen; Provisional	99.71
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	99.68
PLN02976	1713	amine oxidase	99.67
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	99.67
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	99.61
COG2907	447	Predicted NAD/FAD-binding protein [General functio	99.61
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	99.41
COG3349	485	Uncharacterized conserved protein [Function unknow	99.39
COG2081	408	Predicted flavoproteins [General function predicti	99.34
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	99.27
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	99.26
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	99.24
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.11
COG0579	429	Predicted dehydrogenase [General function predicti	99.08
PRK11728	393	hydroxyglutarate oxidase; Provisional	99.06
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	99.06
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	99.02
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	98.96
PRK08274	466	tricarballylate dehydrogenase; Validated	98.91
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	98.91
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	98.86
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	98.86
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.84
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	98.84
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	98.78
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	98.77
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	98.76
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	98.75
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	98.74
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	98.73
PTZ00383	497	malate:quinone oxidoreductase; Provisional	98.72
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	98.69
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	98.63
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	98.59
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	98.59
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	98.54
PRK10157	428	putative oxidoreductase FixC; Provisional	98.52
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	98.52
PRK10015	429	oxidoreductase; Provisional	98.49
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.44
PRK07121	492	hypothetical protein; Validated	98.41
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.4
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.4
TIGR00275	400	flavoprotein, HI0933 family. The model when search	98.38
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.38
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	98.37
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	98.36
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	98.35
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	98.35
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	98.35
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	98.34
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	98.34
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.34
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.33
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.3
PRK06370	463	mercuric reductase; Validated	98.3
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.3
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.3
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	98.3
PRK06116	450	glutathione reductase; Validated	98.29
PRK08013	400	oxidoreductase; Provisional	98.27
PTZ00058	561	glutathione reductase; Provisional	98.27
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.26
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	98.25
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	98.25
PRK09126	392	hypothetical protein; Provisional	98.24
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.23
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.23
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.23
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	98.23
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.22
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.22
PLN02463	447	lycopene beta cyclase	98.22
PRK07045	388	putative monooxygenase; Reviewed	98.22
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	98.22
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.22
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.21
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	98.21
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	98.2
PRK06184	502	hypothetical protein; Provisional	98.19
COG3573	552	Predicted oxidoreductase [General function predict	98.19
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	98.19
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	98.18
PLN02661	357	Putative thiazole synthesis	98.18
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	98.18
PRK07236	386	hypothetical protein; Provisional	98.17
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.16
PRK13748	561	putative mercuric reductase; Provisional	98.16
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	98.16
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	98.16
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	98.16
PRK14694	468	putative mercuric reductase; Provisional	98.16
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.16
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	98.15
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	98.15
PRK08163	396	salicylate hydroxylase; Provisional	98.15
PRK12842	574	putative succinate dehydrogenase; Reviewed	98.14
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	98.13
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	98.13
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.13
PRK06185	407	hypothetical protein; Provisional	98.12
PRK06834	488	hypothetical protein; Provisional	98.12
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	98.12
PLN02985	514	squalene monooxygenase	98.12
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	98.12
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	98.11
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	98.11
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	98.1
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	98.1
PRK07190	487	hypothetical protein; Provisional	98.1
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.09
PRK12831	464	putative oxidoreductase; Provisional	98.09
PLN02697	529	lycopene epsilon cyclase	98.09
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.09
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	98.09
TIGR02053	463	MerA mercuric reductase. This model represents the	98.08
PRK14727	479	putative mercuric reductase; Provisional	98.08
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	98.07
PLN02464	627	glycerol-3-phosphate dehydrogenase	98.07
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.07
PTZ00367	567	squalene epoxidase; Provisional	98.06
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	98.06
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.05
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	98.05
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	98.04
PRK06847	375	hypothetical protein; Provisional	98.04
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.04
PRK06126	545	hypothetical protein; Provisional	98.03
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.03
PTZ00052	499	thioredoxin reductase; Provisional	98.02
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.02
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	98.02
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	98.02
PRK12839	572	hypothetical protein; Provisional	98.02
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	98.01
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	98.01
PRK06753	373	hypothetical protein; Provisional	98.0
PLN02507	499	glutathione reductase	98.0
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	98.0
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	98.0
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	98.0
PRK07804	541	L-aspartate oxidase; Provisional	97.99
PRK12779	944	putative bifunctional glutamate synthase subunit b	97.99
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	97.99
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	97.98
PRK08244	493	hypothetical protein; Provisional	97.98
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	97.98
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	97.98
PRK08132	547	FAD-dependent oxidoreductase; Provisional	97.97
PRK05257	494	malate:quinone oxidoreductase; Validated	97.97
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	97.97
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	97.97
PRK11445	351	putative oxidoreductase; Provisional	97.97
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	97.97
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	97.97
PRK07538	413	hypothetical protein; Provisional	97.96
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	97.96
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	97.96
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	97.94
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	97.94
PRK07395	553	L-aspartate oxidase; Provisional	97.94
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.94
PRK02106	560	choline dehydrogenase; Validated	97.93
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	97.93
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	97.93
PRK06175	433	L-aspartate oxidase; Provisional	97.93
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	97.93
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	97.93
PRK07588	391	hypothetical protein; Provisional	97.91
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	97.91
PLN02546	558	glutathione reductase	97.91
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	97.9
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	97.89
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	97.89
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	97.89
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	97.89
PRK05868	372	hypothetical protein; Validated	97.87
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	97.87
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	97.87
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	97.86
PLN02815	594	L-aspartate oxidase	97.86
PRK10262	321	thioredoxin reductase; Provisional	97.85
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	97.85
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	97.84
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	97.84
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.84
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	97.82
PRK13339	497	malate:quinone oxidoreductase; Reviewed	97.82
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	97.82
PRK08294	634	phenol 2-monooxygenase; Provisional	97.82
PRK06475	400	salicylate hydroxylase; Provisional	97.82
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.81
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	97.81
PLN02852	491	ferredoxin-NADP+ reductase	97.8
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	97.8
PRK12814	652	putative NADPH-dependent glutamate synthase small	97.8
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	97.79
PRK06996	398	hypothetical protein; Provisional	97.79
PRK08071	510	L-aspartate oxidase; Provisional	97.79
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	97.78
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	97.77
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	97.77
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	97.76
KOG2853	509	consensus Possible oxidoreductase [General functio	97.75
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	97.74
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	97.73
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	97.73
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	97.71
PRK08275	554	putative oxidoreductase; Provisional	97.71
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.71
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	97.71
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	97.7
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	97.7
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	97.69
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	97.68
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	97.67
PRK09077	536	L-aspartate oxidase; Provisional	97.67
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	97.66
PRK08401	466	L-aspartate oxidase; Provisional	97.66
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	97.62
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	97.59
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.58
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.57
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	97.54
PRK12770	352	putative glutamate synthase subunit beta; Provisio	97.54
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	97.52
PLN02785	587	Protein HOTHEAD	97.52
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	97.51
PRK06567	1028	putative bifunctional glutamate synthase subunit b	97.51
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	97.5
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	97.47
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	97.47
PTZ00188	506	adrenodoxin reductase; Provisional	97.47
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	97.47
PRK07846	451	mycothione reductase; Reviewed	97.44
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.42
PRK07512	513	L-aspartate oxidase; Provisional	97.42
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	97.41
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	97.41
PRK13984	604	putative oxidoreductase; Provisional	97.39
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.38
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	97.34
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	97.23
COG4716	587	Myosin-crossreactive antigen [Function unknown]	97.21
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	97.12
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	96.95
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	96.9
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	96.86
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	96.84
PRK09897	534	hypothetical protein; Provisional	96.83
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	96.79
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	96.73
KOG2960	328	consensus Protein involved in thiamine biosynthesi	96.72
PRK09564	444	coenzyme A disulfide reductase; Reviewed	96.63
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	96.58
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	96.44
PRK13512	438	coenzyme A disulfide reductase; Provisional	96.39
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	96.26
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	96.25
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	96.23
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	96.22
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	95.9
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	95.75
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	95.54
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	95.49
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	95.4
KOG2852	380	consensus Possible oxidoreductase [General functio	95.19
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	95.14
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	95.12
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	95.02
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	94.98
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	94.94
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	94.82
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	94.75
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	94.69
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	94.66
PF07156	368	Prenylcys_lyase: Prenylcysteine lyase; InterPro: I	94.59
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.56
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	94.54
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	94.5
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	94.29
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	94.28
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.24
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	94.17
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	94.16
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	94.04
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	93.9
PRK14989	847	nitrite reductase subunit NirD; Provisional	93.75
TIGR02053	463	MerA mercuric reductase. This model represents the	93.73
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	93.73
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	93.69
PRK06370	463	mercuric reductase; Validated	93.69
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.59
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	93.57
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	93.53
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.5
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.47
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	93.43
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	93.41
PRK13512	438	coenzyme A disulfide reductase; Provisional	93.39
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	93.36
PRK07846	451	mycothione reductase; Reviewed	93.36
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	93.31
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	93.29
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	93.27
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	93.26
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	93.18
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.18
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.14
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	93.12
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	93.08
COG0569	225	TrkA K+ transport systems, NAD-binding component [	93.01
PRK04148	134	hypothetical protein; Provisional	92.88
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.71
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.68
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	92.67
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	92.66
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	92.61
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	92.52
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	92.5
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	92.39
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	92.38
PRK05257	494	malate:quinone oxidoreductase; Validated	92.36
PRK07845	466	flavoprotein disulfide reductase; Reviewed	92.28
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	92.22
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	92.16
PRK09564	444	coenzyme A disulfide reductase; Reviewed	92.09
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	91.97
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	91.84
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	91.81
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	91.74
PTZ00058	561	glutathione reductase; Provisional	91.72
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	91.71
PTZ00153	659	lipoamide dehydrogenase; Provisional	91.69
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	91.68
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	91.67
PRK14989	847	nitrite reductase subunit NirD; Provisional	91.67
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	91.65
PRK10262	321	thioredoxin reductase; Provisional	91.63
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	91.58
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	91.45
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	91.37
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	91.33
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	91.24
PLN02507	499	glutathione reductase	91.22
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	91.2
PRK12770	352	putative glutamate synthase subunit beta; Provisio	91.2
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	91.14
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	91.12
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	91.06
PRK06116	450	glutathione reductase; Validated	90.99
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	90.98
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	90.78
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	90.74
PRK12831	464	putative oxidoreductase; Provisional	90.69
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	90.62
PLN02353	473	probable UDP-glucose 6-dehydrogenase	90.56
PRK13748	561	putative mercuric reductase; Provisional	90.47
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	90.41
PLN02546	558	glutathione reductase	90.35
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	90.28
PRK14694	468	putative mercuric reductase; Provisional	90.23
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	90.17
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	90.09
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	90.06
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	90.05
PRK07417	279	arogenate dehydrogenase; Reviewed	90.02
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	90.0
PRK07121	492	hypothetical protein; Validated	89.97
PRK06719	157	precorrin-2 dehydrogenase; Validated	89.96
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	89.94
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	89.91
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	89.86
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	89.84
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	89.8
TIGR01816	565	sdhA_forward succinate dehydrogenase, flavoprotein	89.74
PRK14727	479	putative mercuric reductase; Provisional	89.59
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	89.56
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	89.56
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	89.54
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	89.47
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	89.47
PRK13339	497	malate:quinone oxidoreductase; Reviewed	89.25
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	89.12
PTZ00052	499	thioredoxin reductase; Provisional	89.05
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	89.01
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	88.97
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	88.94
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	88.9
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	88.88
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	88.88
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	88.78
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	88.73
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	88.66
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	88.6
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	88.57
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	88.54
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	88.5
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	88.4
PRK10157	428	putative oxidoreductase FixC; Provisional	88.39
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	88.15
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	88.02
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	87.98
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	87.76
PRK15116	268	sulfur acceptor protein CsdL; Provisional	87.76
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	87.6
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	87.57
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	87.49
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	87.47
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	87.44
PRK06175	433	L-aspartate oxidase; Provisional	87.44
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	87.28
PRK11730	715	fadB multifunctional fatty acid oxidation complex	87.27
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	87.24
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	87.08
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	87.02
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	86.98
PLN02695	370	GDP-D-mannose-3',5'-epimerase	86.98
PRK06847	375	hypothetical protein; Provisional	86.8
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	86.66
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	86.51
PRK06223	307	malate dehydrogenase; Reviewed	86.45
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	86.4
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	86.39
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	86.36
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	86.36
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	86.33
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	85.99
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	85.93
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	85.92
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	85.92
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	85.85
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	85.85
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	85.79
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	85.73
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	85.7
PRK12842	574	putative succinate dehydrogenase; Reviewed	85.69
PRK07831	262	short chain dehydrogenase; Provisional	85.66
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	85.61
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	85.45
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	85.35
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	85.34
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	85.34
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	85.15
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	85.14
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	85.06
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	84.93
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	84.93
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	84.93
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	84.88
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	84.87
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	84.82
PRK10015	429	oxidoreductase; Provisional	84.79
PRK08306	296	dipicolinate synthase subunit A; Reviewed	84.66
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	84.59
PLN02256	304	arogenate dehydrogenase	84.48
PTZ00082	321	L-lactate dehydrogenase; Provisional	84.46
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	84.34
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	84.22
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	84.21
PRK07045	388	putative monooxygenase; Reviewed	84.11
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	84.05
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	84.02
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	83.95
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	83.89
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	83.86
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	83.84
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	83.79
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	83.67
PLN02464	627	glycerol-3-phosphate dehydrogenase	83.58
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	83.58

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=100.00  E-value=1e-67  Score=532.57  Aligned_cols=373  Identities=35%  Similarity=0.648  Sum_probs=290.2

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCcccccccccccc
Q 011414           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS   98 (486)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (486)
                      |+++|||||+|||+.++++|++|+++|++|||+|+|++|||.++|++++++.+|+......                 ..
T Consensus         1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~-----------------~~   63 (438)
T PF00996_consen    1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWT-----------------PP   63 (438)
T ss_dssp             --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCH-----------------HH
T ss_pred             CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccc-----------------cc
Confidence            4688999999999999999999999999999999999999999999999998888654210                 00


Q ss_pred             ccccCCCCceEeecCCCEEEecChHHHHHHHhcCcccccchhcccceeeeccCCceeecCCCHHHHhhcccCChHhHHHH
Q 011414           99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (486)
Q Consensus        99 ~~~~~~~~~~~idl~Gp~ll~~~~~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s~~~~f~~~~l~~~~k~~l  178 (486)
                      +.+ ..+|+|+|||. |++++++|+++++|+++++.+|+||+.+++.|+|. +|++++||+++.|+|+++.+++.+||+|
T Consensus        64 ~~~-~~sR~ynIDL~-PKll~a~g~LV~lLi~S~V~rYLEFk~V~~~~v~~-~~~l~kVP~sr~dvf~s~~lsl~eKR~l  140 (438)
T PF00996_consen   64 ESL-GRSRDYNIDLI-PKLLYARGPLVKLLISSGVTRYLEFKAVDGSYVYK-NGKLHKVPCSREDVFKSKLLSLFEKRRL  140 (438)
T ss_dssp             HHH-HTGGGC-EESS---BEETTSHHHHHHHHCTGGGGSEEEEESEEEEEE-TTEEEE--SSHHHHHC-TTS-HHHHHHH
T ss_pred             ccc-ccccceeEecc-hHhhhccCHHHHHHHhCCcccceEEEEcceeEEEe-CCEEeeCCCCHHHhhcCCCccHHHHHHH
Confidence            122 36799999998 99999999999999999999999999999999986 8999999999999999999999999999


Q ss_pred             HHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChHHHHHHHHHHhhccCCchhhhhhhchhhHHHHHHHHH
Q 011414          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN  258 (486)
Q Consensus       179 ~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~l~~~i~~~~~~~~~~~~~~s~~~~l~~~~~~~  258 (486)
                      |||++++.++....+...   + ..+...+++.+++++|++++.+++++.|++++...+...   ..++.+++.++++|+
T Consensus       141 mkFl~~v~~~~~~~~~~~---~-~~~~~~~~~~e~~~~f~L~~~~~~~i~haiaL~~~~~~~---~~p~~~~l~ri~~yl  213 (438)
T PF00996_consen  141 MKFLKFVANYEEDDPSTH---K-GLDPEKKTFQELLKKFGLSENLIDFIGHAIALSLDDSYL---TEPAREGLERIKLYL  213 (438)
T ss_dssp             HHHHHHHHHGCTTBGGGS---T-TG-TTTSBHHHHHHHTTS-HHHHHHHHHHTS-SSSSGGG---GSBSHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccCCcchh---h-ccccccccHHHHHHhcCCCHHHHHHHHHhhhhccCcccc---cccHHHHHHHHHHHH
Confidence            999999988754322110   1 113446899999999999999999999999886432211   126788999999999


Q ss_pred             HhhhcccCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEECCCCCC
Q 011414          259 SSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTV  338 (486)
Q Consensus       259 ~s~g~~g~~~g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~p~~~~  338 (486)
                      .|+|+||++  +|+||+||.|||+|+|||++|+.||+|+||++|++|..++ +|++.+|+ ++|++++|++||++|.|. 
T Consensus       214 ~SlgryG~s--PfLyP~YG~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~-~g~~~gV~-s~ge~v~~k~vI~dpsy~-  288 (438)
T PF00996_consen  214 SSLGRYGKS--PFLYPLYGLGELPQAFCRLSAVYGGTYMLNRPIDEIVVDE-DGKVIGVK-SEGEVVKAKKVIGDPSYL-  288 (438)
T ss_dssp             HHHCCCSSS--SEEEETT-TTHHHHHHHHHHHHTT-EEESS--EEEEEEET-TTEEEEEE-ETTEEEEESEEEEEGGGB-
T ss_pred             HHHhccCCC--CEEEEccCCccHHHHHHHHhhhcCcEEEeCCccceeeeec-CCeEEEEe-cCCEEEEcCEEEECCccC-
Confidence            999999986  4999999999999999999999999999999999999974 68899997 599999999999999886 


Q ss_pred             CCCCcccchhhhhhhhhhccCCCcceEEEEEEEecCCCCCCC--CceEEEeCCCCCCCCCCceEEEEEeCCCCccCCCCe
Q 011414          339 PGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDL--SNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGM  416 (486)
Q Consensus       339 ~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~~~~~--~~~~~~~p~~~~~~~~~~~v~v~~~~~~~~~~P~G~  416 (486)
                      ++-.                 ...++++|+|+|+++|+....  ...++++|+.+.+  ..++||++++|+++++||+|+
T Consensus       289 p~~v-----------------~~~~~V~RaI~Il~~pi~~t~~~~s~~IiiP~~~~~--~~~dIyv~~~ss~~~~CP~G~  349 (438)
T PF00996_consen  289 PEKV-----------------KKTGQVSRAICILDHPIPNTEDASSVQIIIPQSQVG--RKSDIYVLQLSSSTGVCPKGQ  349 (438)
T ss_dssp             GCGE-----------------EEEEEEEEEEEEESS-STTSTT-SSEEEEE-GGGCT--SSS-EEEEEEEGGGTSS-TT-
T ss_pred             cccc-----------------cccceEEEEEEEEcCCCCCCCCCceEEEecCCcccC--CCCCeEEEEECCCccccCCCc
Confidence            3211                 124579999999999998643  3567779987654  356799999999999999999


Q ss_pred             EEEEEEEeeccCcchHHHHHHHHHHHH
Q 011414          417 FVLYFSALCDEVNQGKKLLHAALSALQ  443 (486)
Q Consensus       417 ~vi~~~t~~~~~~~~~~~l~~~~~~l~  443 (486)
                      ||+|+||..++ .+++++|+++++.|-
T Consensus       350 yi~~~St~~~t-~~p~~eL~~~l~lL~  375 (438)
T PF00996_consen  350 YIAYVSTTVET-SNPEEELEPALELLG  375 (438)
T ss_dssp             EEEEEEEEE-S-S-HHHHTHHHHHTT-
T ss_pred             EEEEEEeccCC-CCcHHHHHHHHHhhc
Confidence            99999998765 588999999998554

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.5e-65  Score=487.34  Aligned_cols=415  Identities=34%  Similarity=0.590  Sum_probs=327.6

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchh--------hhhhhhh---cCCCCC-------
Q 011414           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIA--------DLTHFLN---SHSTPS-------   80 (486)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~--------~~~~~~~---~~~~~~-------   80 (486)
                      .|++|||||||||+.+++.|++.+|+|.+|||||+|.||||.|+||++.        .+.++.+   +...++       
T Consensus         5 lP~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSms~ihe~~e~~l~~~d~ls~eVe~~~al~~n~~   84 (547)
T KOG4405|consen    5 LPEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSMSMIHEVEEAALTKKDHLSNEVEPPSALQKNNA   84 (547)
T ss_pred             CchhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceeechhhhhhHHHHhhhhccccccCCCccccccCC
Confidence            4688999999999999999999999999999999999999999999987        3333321   111111       


Q ss_pred             ---CCCCCCccccccccc---------------cccccccCCCCceEeecCCCEEEecChHHHHHHHhcCcccccchhcc
Q 011414           81 ---SVCPDPLYSDVEISN---------------YASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI  142 (486)
Q Consensus        81 ---~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~idl~Gp~ll~~~~~l~~~l~~~~~~~y~ef~~~  142 (486)
                         +.+.+.++-+.+...               .....+.++.|+|+|||. |+++|++|.++++|+++++.+|.||+.+
T Consensus        85 ~~t~~sn~e~~~~vEken~~~~s~~d~~E~~p~~nr~~i~~~~RRFniDLv-pkilys~g~lI~lLikS~vsrYaEFK~V  163 (547)
T KOG4405|consen   85 PPTPPSNNEIFLEVEKENCIPSSLKDSVEDSPSKNRSQIEKESRRFNIDLV-PKILYSAGELIQLLIKSNVSRYAEFKNV  163 (547)
T ss_pred             CCCCCCCchhhhheeeeccccccccchhhhcccccHHHHHHhccccchhhh-hHHHhcccHHHHHHHHhcchhhhhhhcc
Confidence               111122333333220               011123357899999998 9999999999999999999999999999


Q ss_pred             cceeeeccCCceeecCCCHHHHhhcccCChHhHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChH
Q 011414          143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHK  222 (486)
Q Consensus       143 ~~~~~~~~~g~~~~vp~s~~~~f~~~~l~~~~k~~l~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~  222 (486)
                      +..+... +|++..|||+++++|+++.|++.+||+||||++++.+|..+.     ..+...++.+.||.|||++++++++
T Consensus       164 ~r~l~~~-eg~l~~VPcSRadvFnsk~LTivEKr~LMKFltfc~~y~tEk-----~~~~~~~~~e~~F~EyL~~~rltp~  237 (547)
T KOG4405|consen  164 DRILAFR-EGELEQVPCSRADVFNSKSLTIVEKRMLMKFLTFCQEYLTEK-----DPDEYVEFRERPFSEYLKTMRLTPK  237 (547)
T ss_pred             chhhccc-CCeeeecCchHHhhhcccchhHHHHHHHHHHHHHHHHhhhcc-----CcHHHHHhhcCcHHHHHHhcCCChh
Confidence            9988775 789999999999999999999999999999999999985211     1122345667899999999999999


Q ss_pred             HHHHHHHHHhhccCCchhhhhhhchhhHHHHHHHHHHhhhcccCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCce
Q 011414          223 IKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPV  302 (486)
Q Consensus       223 l~~~l~~~i~~~~~~~~~~~~~~s~~~~l~~~~~~~~s~g~~g~~~g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V  302 (486)
                      ++.+++++|+|..+++      .++.+++.+.+.|+.|+||||+++  |+||.||.|+|+|+|||+|+++||.|+|+++|
T Consensus       238 lqs~vl~aIaM~~~~~------~tt~eGm~at~~fl~slGrfgntp--fLfPlYGqGELpQcFCRlcAVfGgIYcLr~~V  309 (547)
T KOG4405|consen  238 LQSIVLHAIAMLSESQ------LTTIEGMDATKNFLTSLGRFGNTP--FLFPLYGQGELPQCFCRLCAVFGGIYCLRRPV  309 (547)
T ss_pred             hHHHHHHHHHhcCccc------ccHHHHHHHHHHHHHHhhccCCCc--ceeeccCCCcchHHHHHHHHHhcceEEeccch
Confidence            9999999999976543      478999999999999999999976  99999999999999999999999999999999


Q ss_pred             eEEEEecCCCeEEEEEeCCCcEEEcCEEEECCCCCCCCCCcccchhhhhhhhhhccCCCcceEEEEEEEecCCCCCCC--
Q 011414          303 ISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDL--  380 (486)
Q Consensus       303 ~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~~~~~--  380 (486)
                      +.|..+++.+++..+..+.|+.+.|+++|+.|.|+ +... ...             ....+++|+++|++.++....  
T Consensus       310 q~ivldk~s~~~~~~l~s~g~ri~~k~~v~s~~y~-pe~~-~~~-------------~~~K~Israv~itd~sil~~e~~  374 (547)
T KOG4405|consen  310 QAIVLDKESLDCKAILDSFGQRINAKNFVVSPSYA-PEVV-CSR-------------VQLKQISRAVLITDPSILKTELD  374 (547)
T ss_pred             hheeecccccchhhhHhhhcchhcceeeeecCccc-cccc-ccc-------------cchhhcceeEEecCccccchhHH
Confidence            99999854444333334789999999999999987 4322 111             123369999999999976433  


Q ss_pred             -CceEEEeCCCCCCCCCCceEEEEEeCCCCccCCCCeEEEEEEEeeccCcchHHHHHHHHHHHHhhhhcCCCCCCCCccc
Q 011414          381 -SNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQS  459 (486)
Q Consensus       381 -~~~~~~~p~~~~~~~~~~~v~v~~~~~~~~~~P~G~~vi~~~t~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~  459 (486)
                       ...++.+++..-+   ...+.+++++++++.||+|.|++|++  +..+..+.++++..+.+++..            +.
T Consensus       375 q~~~ll~~~~~epg---~~avr~iel~~~t~tc~kg~yLvhlT--~~~s~~~~ed~~S~~~kif~t------------~~  437 (547)
T KOG4405|consen  375 QQLSLLSLLAVEPG---AMAVRLIELCSSTMTCPKGTYLVHLT--CLSSKTAREDLESDVVKIFTT------------EI  437 (547)
T ss_pred             hhhhhhhccccCcc---hhhHHHHHhhcccccCccceEEEEee--cccCcccccchhhhHHHHhhh------------hh
Confidence             1234455543321   45678899999999999999999998  434457889999999999972            11


Q ss_pred             cccccCCcceEeEEeEEeecCc
Q 011414          460 EDMEEAKPTLLWSALYIQDLSL  481 (486)
Q Consensus       460 ~~~~~~~~~~l~~~~~~~~~~~  481 (486)
                      .+ +..||++||++||+|++.+
T Consensus       438 ~~-E~~kp~llw~~yf~~~~~s  458 (547)
T KOG4405|consen  438 KN-ETSKPRLLWALYFTMRDSS  458 (547)
T ss_pred             cc-ccccceehHHHHhhHHhhc
Confidence            12 3358999999999998876

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=100.00  E-value=7.5e-62  Score=497.05  Aligned_cols=375  Identities=29%  Similarity=0.515  Sum_probs=314.9

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCcccccccccccc
Q 011414           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS   98 (486)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (486)
                      |+++|||||||||++||++|++|+++|++|+|||+|++|||+++|++++++..|+.... ++                 .
T Consensus         1 m~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~~~-~~-----------------~   62 (443)
T PTZ00363          1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGE-TP-----------------P   62 (443)
T ss_pred             CCCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhcccC-CC-----------------c
Confidence            46789999999999999999999999999999999999999999999988655543221 11                 0


Q ss_pred             ccccCCCCceEeecCCCEEEecChHHHHHHHhcCcccccchhcccceeeeccCCceeecCCCHHHHhhcccCChHhHHHH
Q 011414           99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (486)
Q Consensus        99 ~~~~~~~~~~~idl~Gp~ll~~~~~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s~~~~f~~~~l~~~~k~~l  178 (486)
                      +.+ ...|.|++|+. |++++++|.++++|.++++.+|+||+.++..|++..+|+++++|+++.++|+++.+++.+|+++
T Consensus        63 ~~~-~~~r~~~iDL~-Pk~l~~~G~lv~lL~~s~v~ryleF~~l~g~~v~~~~g~~~~vP~s~~~~~~s~ll~l~eKr~l  140 (443)
T PTZ00363         63 ESL-GRNRDWNVDLI-PKFIMASGELVKILLHTDVTRYLEFKVIDGSYVYQKEGKIHKVPATDMEALSSPLMGFFEKNRC  140 (443)
T ss_pred             hhc-ccccccccccC-CeeeecCChHHHHHhhcCccceeeeEEeceEEEEecCCeEEECCCCHHHHhhCCCcchhhHHHH
Confidence            112 35789999996 9999999999999999999999999999999987448899999999999999999999999999


Q ss_pred             HHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChHHHHHHHHHHhhccCCchhhhhhhchhhHHHHHHHHH
Q 011414          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN  258 (486)
Q Consensus       179 ~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~l~~~i~~~~~~~~~~~~~~s~~~~l~~~~~~~  258 (486)
                      |||++++.++....+...   . ..++..+|+.+||+++++++.+++++.+++++.....-   ...++..++.++++|+
T Consensus       141 ~kfl~~v~~~~~~~~~~~---~-~~~~d~~T~~d~L~~~~ls~~~~d~i~~~ial~~~~~~---~~~pa~~tl~ri~~y~  213 (443)
T PTZ00363        141 KNFLQYVSNYDENDPETH---K-GLNLKTMTMAQLYKKFGLEDNTIDFVGHAVALYTNDDY---LNKPAIETVMRIKLYM  213 (443)
T ss_pred             HHHHHHHHhhccCChhhh---c-ccCcccCCHHHHHHHhCCCHHHHHHHHHHHHhhccccc---ccCCHHHHHHHHHHHH
Confidence            999999987753221110   0 01234589999999999999999999888777521100   0125778899999999


Q ss_pred             HhhhcccCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEECCCCCC
Q 011414          259 SSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTV  338 (486)
Q Consensus       259 ~s~g~~g~~~g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~p~~~~  338 (486)
                      .|+++||.+  +++||+||+++|+|+|||.++++||+|+|+++|++|..++ ++++++|++++|++++|++||++|.+. 
T Consensus       214 ~S~~~~g~~--p~~yp~gG~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~-~g~~~~V~~~~Ge~i~a~~VV~~~s~~-  289 (443)
T PTZ00363        214 DSLSRYGKS--PFIYPLYGLGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDE-NGKVCGVKSEGGEVAKCKLVICDPSYF-  289 (443)
T ss_pred             HHHhhccCC--cceeeCCCHHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcC-CCeEEEEEECCCcEEECCEEEECcccc-
Confidence            999999964  4889999999999999999999999999999999998873 578889999999999999999999886 


Q ss_pred             CCCCcccchhhhhhhhhhccCCCcceEEEEEEEecCCCCCC--CCceEEEeCCCCCCCCCCceEEEEEeCCCCccCCCCe
Q 011414          339 PGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPD--LSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGM  416 (486)
Q Consensus       339 ~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~~~~--~~~~~~~~p~~~~~~~~~~~v~v~~~~~~~~~~P~G~  416 (486)
                      |...                 ...++++|+|||+++|+...  .+..+++||+.+++.  .+.||++++|+++++||+|+
T Consensus       290 p~~~-----------------~~~~~v~R~i~i~~~pi~~~~~~~~~~i~~P~~~~~~--~~~i~v~~~s~~~~~cp~g~  350 (443)
T PTZ00363        290 PDKV-----------------KKVGKVIRCICILNHPIPNTNNANSCQIIIPQKQLGR--KNDIYIMLVSSNHGVCPKGK  350 (443)
T ss_pred             cccc-----------------ccccEEEEEEEEEcccccccCcCccEEEEECCcccCC--CCCEEEEEecCCCCcCCCCc
Confidence            3211                 13678999999999998653  245689999988753  57899999999999999999


Q ss_pred             EEEEEEEeeccCcchHHHHHHHHHHHHh
Q 011414          417 FVLYFSALCDEVNQGKKLLHAALSALQK  444 (486)
Q Consensus       417 ~vi~~~t~~~~~~~~~~~l~~~~~~l~~  444 (486)
                      ||+|+||.+++ .+++++|++++++|+.
T Consensus       351 ~i~~~st~~~t-~~~~~~l~~~~~~l~~  377 (443)
T PTZ00363        351 YIAIISTTVET-NNPEKEIEPALKLLGP  377 (443)
T ss_pred             EEEEEEEecCC-CCHHHHHHHHHHHhcc
Confidence            99999999876 5999999999999995

>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.3e-56  Score=427.88  Aligned_cols=371  Identities=31%  Similarity=0.536  Sum_probs=310.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCccccccccccccc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (486)
                      +++|||||+|+|+.+++.+++|+++|++|+|+|||++|||-.+|+++.++..|+......+                 .+
T Consensus         2 deeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sasltl~ql~~~f~~~~~~~-----------------~~   64 (440)
T KOG1439|consen    2 DEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLTLEQLYKKFKKVSEKP-----------------PE   64 (440)
T ss_pred             CCceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccccceeHHHHHHHhccccccC-----------------cc
Confidence            4569999999999999999999999999999999999999999999998888887442110                 01


Q ss_pred             cccCCCCceEeecCCCEEEecChHHHHHHHhcCcccccchhcccceeeeccCCceeecCCCHHHHhhcccCChHhHHHHH
Q 011414          100 LLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLM  179 (486)
Q Consensus       100 ~~~~~~~~~~idl~Gp~ll~~~~~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s~~~~f~~~~l~~~~k~~l~  179 (486)
                      .. ...|.|++|+. |+++++.+.++++|++.++.+|++|+.+++.|+|. +|++++||.++.++|+++.+++.+||++|
T Consensus        65 ~~-~~~rd~nvDLi-PK~lmAn~~Lvk~Li~T~V~~YL~fk~i~gsfv~~-~~k~~KVP~t~~Ea~~s~lmgl~eKrr~~  141 (440)
T KOG1439|consen   65 KL-GRDRDWNVDLI-PKFLMANGELVKILIHTGVTRYLEFKSISGSFVYK-KGKIYKVPATEAEALTSPLMGLFEKRRVM  141 (440)
T ss_pred             cc-ccccccchhhc-hHhhhccchHHHHHHHhchhhheEEEeecceEEEE-CCeEEECCCCHHHHhcCCccchhHHHHHH
Confidence            11 36789999998 99999999999999999999999999999999987 67999999999999999999999999999


Q ss_pred             HHHHHHHhhcccCccccccccccccccC-CcHHHHHHhcCCChHHHHHHHHHHhhccCCchhhhhhhchhhHHHHHHHHH
Q 011414          180 RFFKLVQGHLSLDESEENNVRISEEDLD-SPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN  258 (486)
Q Consensus       180 ~fl~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~l~~~~l~~~l~~~l~~~i~~~~~~~~~~~~~~s~~~~l~~~~~~~  258 (486)
                      ||+.++.++.++.+...     -..+.. .++.+++.++++....+.+..+++++...+.  .. ..++.+++.++.+|+
T Consensus       142 kFl~~V~n~~e~~~~~~-----~~~~~~k~tm~~~~~~~~l~~~~~~f~gh~~al~~dd~--~l-d~p~~~~~~ri~~Y~  213 (440)
T KOG1439|consen  142 KFLKFVLNYDEEDPKTW-----QGYDLSKDTMREFLGKFGLLEGTIDFIGHAIALLCDDS--YL-DQPAKETLERILLYV  213 (440)
T ss_pred             HHHHHHhhhhhhccccc-----cccccccchHHHHHHHhcccccceeeeeeeeEEEecch--hc-cCccHHHHHHHHHHH
Confidence            99999998754432211     112232 3899999999999999998888776643221  11 246888999999999


Q ss_pred             HhhhcccCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEECCCCCC
Q 011414          259 SSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTV  338 (486)
Q Consensus       259 ~s~g~~g~~~g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~p~~~~  338 (486)
                      +|+++||+++  ++||+||.|||+|+|||+++..||+|+||.++.+|..++ +|++++|+ ..++..+|+.+|++|+|. 
T Consensus       214 ~S~~~yg~~~--ylyP~yGlgEL~QgFaRlsAvyGgTYMLn~pi~ei~~~~-~gk~igvk-~~~~v~~~k~vi~dpSY~-  288 (440)
T KOG1439|consen  214 RSFARYGKSP--YLYPLYGLGELPQGFARLSAVYGGTYMLNKPIDEINETK-NGKVIGVK-SGGEVAKCKKVICDPSYF-  288 (440)
T ss_pred             HHHhhcCCCc--ceecccCcchhhHHHHHHhhccCceeecCCceeeeeccC-CccEEEEe-cCCceeecceEEecCccc-
Confidence            9999999865  899999999999999999999999999999999998853 68888887 466778899999999986 


Q ss_pred             CCCCcccchhhhhhhhhhccCCCcceEEEEEEEecCCCC--CCCCceEEEeCCCCCCCCCCceEEEEEeCCCCccCCCCe
Q 011414          339 PGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK--PDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGM  416 (486)
Q Consensus       339 ~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~~--~~~~~~~~~~p~~~~~~~~~~~v~v~~~~~~~~~~P~G~  416 (486)
                      +.-                 ....++++|++||+++|..  .+.++++++||+.+.+  ..+.|||..+|+....||+|+
T Consensus       289 ~~~-----------------~k~vg~viR~iCIl~hpi~~t~~~~S~qiiipq~q~~--rksdi~v~~~ss~~~vcpeG~  349 (440)
T KOG1439|consen  289 PQK-----------------VKKVGQVIRAICILSHPIPNTNDAESAQIIIPQFQVG--RKSDIYVFGLSSAHNVCPEGK  349 (440)
T ss_pred             hHH-----------------HHhhhheeeeeEEecCCcCcCCccceeeEEechhhhC--CcccEEEEEeccCCCcCCCce
Confidence            221                 1134579999999998864  3446789999987765  378999999999999999999


Q ss_pred             EEEEEEEeeccCcchHHHHHHHHHHHH
Q 011414          417 FVLYFSALCDEVNQGKKLLHAALSALQ  443 (486)
Q Consensus       417 ~vi~~~t~~~~~~~~~~~l~~~~~~l~  443 (486)
                      +|.+++|..++ .+++.++.++++.|-
T Consensus       350 yia~vsT~~Et-~~pE~ei~~~lellg  375 (440)
T KOG1439|consen  350 YIAYVSTTVET-PNPEVEILPGLELLG  375 (440)
T ss_pred             EEEEEEeccCC-CChHHhhhhHHHhhC
Confidence            99999997765 477888888887765

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.4e-53  Score=398.99  Aligned_cols=369  Identities=31%  Similarity=0.533  Sum_probs=305.6

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCcccccccccccc
Q 011414           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS   98 (486)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (486)
                      +.+.|||||+|||+..++.+++|+++|++|+|+|+|++||+-.+|++..++..|+.....-+                  
T Consensus         3 ~~~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~asltl~ql~~~~~~~~~~p------------------   64 (434)
T COG5044           3 EETLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLTLTQLEKYFDECEKRP------------------   64 (434)
T ss_pred             ccccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccccceeHHHHHHHhhhhhccc------------------
Confidence            44679999999999999999999999999999999999999999999999888987663211                  


Q ss_pred             ccccCCCCceEeecCCCEEEecChHHHHHHHhcCcccccchhcccceeeeccCCceeecCCCHHHHhhcccCChHhHHHH
Q 011414           99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (486)
Q Consensus        99 ~~~~~~~~~~~idl~Gp~ll~~~~~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s~~~~f~~~~l~~~~k~~l  178 (486)
                      + .....+.|++|+. |+++++.+.++.+|++.++.+|++|+++...|+|. +|+++++|.++.++|+++.+++.+||.+
T Consensus        65 ~-k~~~drd~~iDL~-PK~l~A~s~l~~iLi~t~v~~YLefk~i~~~~~~~-~~k~~kVP~ne~ei~~s~~lsL~eKr~v  141 (434)
T COG5044          65 S-KGGGDRDLNIDLI-PKFLFANSELLKILIETGVTEYLEFKQISGSFLYR-PGKIYKVPYNEAEIFTSPLLSLFEKRRV  141 (434)
T ss_pred             c-ccccccccchhhc-hhhhcccchHHHHHHHhChHhheeeeeccccEEec-CCcEEECCccHHhhhcCCCcchhhHHHH
Confidence            0 1125688999998 99999999999999999999999999999999987 6699999999999999999999999999


Q ss_pred             HHHHHHHHhhcccCccccccccccccccCCcHHHHHH-hcCCChHHHHHHHHHHhhccCCchhhhhhhchhhHHHHHHHH
Q 011414          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLT-KMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALY  257 (486)
Q Consensus       179 ~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~-~~~l~~~l~~~l~~~i~~~~~~~~~~~~~~s~~~~l~~~~~~  257 (486)
                      |||++++..+.+..      ..+-..+.++++.+++. +|+++.....++.+++|++. +.+     .++++++.++.+|
T Consensus       142 mrFl~~V~n~~~~~------~~~~~~~e~k~~~~~~~ekf~L~~~~~e~i~~~i~l~l-dl~-----~p~re~~erIl~Y  209 (434)
T COG5044         142 MRFLKWVSNYAEQK------STLQELYESKDTMEFLFEKFGLSGATEEFIGHGIALSL-DLD-----IPAREALERILRY  209 (434)
T ss_pred             HHHHHHHHhHHhhh------hhchhhhhcccHHHHHHHHHccCcchhhhhhhhhhhhc-ccc-----CCchHHHHHHHHH
Confidence            99999998885421      11122455678888886 69999999999999888752 322     5789999999999


Q ss_pred             HHhhhcccCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEECCCCC
Q 011414          258 NSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFT  337 (486)
Q Consensus       258 ~~s~g~~g~~~g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~p~~~  337 (486)
                      ++|++.||..|  ++||+||.+||+|+|||.+++.||+|+||+++.+|...  + .+.+|. .++.+..|.+||.+|++.
T Consensus       210 ~~Sf~~yg~~p--yLyp~YGl~El~QGFaRssav~GgtymLn~~i~ein~t--k-~v~~v~-~~~~~~ka~KiI~~~~~~  283 (434)
T COG5044         210 MRSFGDYGKSP--YLYPRYGLGELSQGFARSSAVYGGTYMLNQAIDEINET--K-DVETVD-KGSLTQKAGKIISSPTYF  283 (434)
T ss_pred             HHhhcccCCCc--ceeeccCchhhhHHHHHhhhccCceeecCcchhhhccc--c-ceeeee-cCcceeecCcccCCcccc
Confidence            99999999755  99999999999999999999999999999999999654  2 234665 577889999999998875


Q ss_pred             CCCCCcccchhhhhhhhhhccCCCcceEEEEEEEec-CC--CCCCCCceEEEeCCCCCCCCCCceEEEEEeCCCCccCCC
Q 011414          338 VPGSLASSHQQLQESFQAFSLSDNKGKVARGICITR-SS--LKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPL  414 (486)
Q Consensus       338 ~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~-~~--~~~~~~~~~~~~p~~~~~~~~~~~v~v~~~~~~~~~~P~  414 (486)
                       +.   +.. .++          ....+.|++||.. +|  +....+.++++|||.++..  .+.|++..+|+.+..||+
T Consensus       284 -~~---~~~-~~~----------q~yriiRa~Ci~~~h~~~~~~~~ds~~iif~~~~lk~--~~~i~v~~lgs~~~~CPE  346 (434)
T COG5044         284 -RE---DSK-SVG----------QFYRIIRAICILLVHPVPFTTGLDSLQIIFPPFSLKR--KNDIQVAGLGSGSEVCPE  346 (434)
T ss_pred             -cc---ccc-ccc----------hhhhhhHhhhhhhcCccccccccccceeeechhhhcc--cCceEEEEecCCCCCCCC
Confidence             22   100 000          1135889999876 54  4445578899999988764  556999999999999999


Q ss_pred             CeEEEEEEEeeccCcchHHHHHHHHHHHHh
Q 011414          415 GMFVLYFSALCDEVNQGKKLLHAALSALQK  444 (486)
Q Consensus       415 G~~vi~~~t~~~~~~~~~~~l~~~~~~l~~  444 (486)
                      |++|+|++|..++ ..++.++..+++.|..
T Consensus       347 Gy~l~yisT~~et-~~~e~ei~~~lell~~  375 (434)
T COG5044         347 GYYLAYISTIDET-PTPEDEILAALELLGP  375 (434)
T ss_pred             ceEEEEEEeccCC-CChHHHHHHHHHhhcc
Confidence            9999999997655 4778888888886653

>TIGR02734 crtI_fam phytoene desaturase

Probab=99.96  E-value=2.5e-27  Score=250.50  Aligned_cols=344  Identities=16%  Similarity=0.137  Sum_probs=211.7

Q ss_pred             EEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCccccccccccccccccCC
Q 011414           25 LIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQH  104 (486)
Q Consensus        25 ViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (486)
                      |||||||++||+||++|+++|++|+||||++++||+++|++.+                                     
T Consensus         1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~~~-------------------------------------   43 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDD-------------------------------------   43 (502)
T ss_pred             CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEecC-------------------------------------
Confidence            6999999999999999999999999999999999999998653                                     


Q ss_pred             CCceEeecCCCEEEecChHHHHHHHhcCc--ccccchhccccee-eeccCCceeecCCCHHHHhhc-ccCChHhHHHHHH
Q 011414          105 PRNFNLDVSGPRVLFCADHAVDLMLKSGA--SHYLEFKSIDATF-MLDADAKLCSVPDSRAAIFKD-KSLGLMEKNQLMR  180 (486)
Q Consensus       105 ~~~~~idl~Gp~ll~~~~~l~~~l~~~~~--~~y~ef~~~~~~~-~~~~~g~~~~vp~s~~~~f~~-~~l~~~~k~~l~~  180 (486)
                        +|.+|. |++++...+.+.+++.+.|.  .++++|...++.+ ++..+|+.+.++.+....... ..+.+.+...+.+
T Consensus        44 --G~~fD~-G~~~~~~~~~~~~l~~~lg~~l~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~  120 (502)
T TIGR02734        44 --GFRFDT-GPTVITMPEALEELFALAGRDLADYVELVPLDPFYRLCWEDGSQLDVDNDQEELEAQIARFNPGDVAGYRR  120 (502)
T ss_pred             --CeEEec-CCeEEccccHHHHHHHHcCCChhheEEEEECCCceEEECCCCCEEEecCCHHHHHHHHHHhCcccHHHHHH
Confidence              467787 58888766666777777773  5667887776655 333467778888765432221 1233556666667


Q ss_pred             HHHHHHhhccc-------Ccccc--c-----cccccccccCCcHHHHHHhcCCChHHHHHHHHHHhhccCCchhhhhhhc
Q 011414          181 FFKLVQGHLSL-------DESEE--N-----NVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLK  246 (486)
Q Consensus       181 fl~~~~~~~~~-------~~~~~--~-----~~~~~~~~~~~s~~~~l~~~~l~~~l~~~l~~~i~~~~~~~~~~~~~~s  246 (486)
                      |++.++.....       .+...  .     ...........|+.+|++++..++.++.++.+.....  ..++  .+.+
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~--g~~p--~~~~  196 (502)
T TIGR02734       121 FLDYAERVYREGYRKLGYVPFLSPRDLLRADLPQLLALLAWRSLYSKVARFFSDERLRQAFSFHALFL--GGNP--FRTP  196 (502)
T ss_pred             HHHHHHHHHHHHHHHHhhCCCCCHHHHHhHhhHhhhhccCcCCHHHHHHhhcCCHHHHHHhcccceee--ccCc--ccch
Confidence            66654432210       00000  0     0001122346899999999888888888765321111  1121  1112


Q ss_pred             hhhHHHHHHHHHHhhhcccCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEE
Q 011414          247 TRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDIL  326 (486)
Q Consensus       247 ~~~~l~~~~~~~~s~g~~g~~~g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~  326 (486)
                      +..   .+..+.   ...+    .+++|.||++.++++|.+.++.+|++|+++++|++|..+  ++++++|++++|+++.
T Consensus       197 ~~~---~l~~~~---~~~~----g~~~~~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~--~~~~~~V~~~~g~~~~  264 (502)
T TIGR02734       197 SIY---ALISAL---EREW----GVWFPRGGTGALVAAMAKLAEDLGGELRLNAEVIRIETE--GGRATAVHLADGERLD  264 (502)
T ss_pred             HHH---HHHHHH---Hhhc----eEEEcCCCHHHHHHHHHHHHHHCCCEEEECCeEEEEEee--CCEEEEEEECCCCEEE
Confidence            211   111111   1111    156899999999999999999999999999999999887  6778899999999999


Q ss_pred             cCEEEECCC--CCCCCCCcccchhhhhhh-hhhccCCCcceEEEEEEEec---CCCCCCCCceEEEeCCCCC--------
Q 011414          327 SHKLVLDPS--FTVPGSLASSHQQLQESF-QAFSLSDNKGKVARGICITR---SSLKPDLSNFLVIFPPRSL--------  392 (486)
Q Consensus       327 A~~VI~~p~--~~~~~l~~~~~~~l~~~~-~~l~~~~~~~~v~r~i~i~~---~~~~~~~~~~~~~~p~~~~--------  392 (486)
                      ||+||++.+  .++..|+ +.+ ..+..+ +.+.+...........+.++   .++.....+.++..+....        
T Consensus       265 ad~VI~a~~~~~~~~~l~-~~~-~~~~~~~~~~~~~~~s~s~~~~~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (502)
T TIGR02734       265 ADAVVSNADLHHTYRRLL-PNH-PRRRYPAARLSRKRPSPSLFVLYFGLLGVDGHWPQLAHHTLCFGPRYKELFDEIFRK  342 (502)
T ss_pred             CCEEEECCcHHHHHHHhc-Ccc-ccccccccccccCCcCCeeeEEEEeeccccCcCCCcCceeEecCcCHHHHHHHHhcC
Confidence            999997533  3333332 111 111111 11111111112222233345   3343222233333232110        


Q ss_pred             CC-CCCceEEEEEeCCC-CccCCCCeEEEEEEEeec
Q 011414          393 FP-EQVTSIRVLQLGGN-LAVCPLGMFVLYFSALCD  426 (486)
Q Consensus       393 ~~-~~~~~v~v~~~~~~-~~~~P~G~~vi~~~t~~~  426 (486)
                      +. ..++.+|+...+.. ++.+|+|+.++++.+.++
T Consensus       343 g~~~~~p~~~v~~~s~~dp~~aP~G~~~~~~~~~~~  378 (502)
T TIGR02734       343 GRLAEDPSLYLHRPTVTDPSLAPPGCENLYVLAPVP  378 (502)
T ss_pred             CCCCCCCcEEEEcCCCCCCCCCCCCCccEEEEEeCC
Confidence            00 12567888887664 588999999988887654

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.95  E-value=7.3e-27  Score=244.51  Aligned_cols=260  Identities=20%  Similarity=0.272  Sum_probs=168.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCccccccccccccc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (486)
                      |..+||||||||++||+||++|||+|++|+|||||+++||+++|++++                                
T Consensus         1 ~~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~--------------------------------   48 (487)
T COG1233           1 MPMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELD--------------------------------   48 (487)
T ss_pred             CCCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEecc--------------------------------
Confidence            457999999999999999999999999999999999999999998654                                


Q ss_pred             cccCCCCceEeecCCCEEEecChHHHHHHHhcC-cccc-cchhccccee-eeccCCceeecCCCHHHHhh-cccCChHhH
Q 011414          100 LLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSG-ASHY-LEFKSIDATF-MLDADAKLCSVPDSRAAIFK-DKSLGLMEK  175 (486)
Q Consensus       100 ~~~~~~~~~~idl~Gp~ll~~~~~l~~~l~~~~-~~~y-~ef~~~~~~~-~~~~~g~~~~vp~s~~~~f~-~~~l~~~~k  175 (486)
                             +|.+|. ||+++...... .++.+.+ ...+ +++...++.+ ++..+|+...+..+...... ....++.+.
T Consensus        49 -------Gf~fd~-G~~~~~~~~~~-~~~~~l~~l~~~~l~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~~p~~~  119 (487)
T COG1233          49 -------GFRFDT-GPSWYLMPDPG-PLFRELGNLDADGLDLLPPDPAYRVFLPDGDAIDVYTDLEATAELLESLEPGDG  119 (487)
T ss_pred             -------ceEecc-CcceeecCchH-HHHHHhccCcccceeeeccCCceeeecCCCCEEEecCCHHHHHHHHHhhCcccH
Confidence                   466777 58776555543 5555555 5444 6776666655 33445777777776643322 122334555


Q ss_pred             HHHHHHHHHHHhh-c---ccCcc-cccc----cccc------ccccCCcHHHHHHhcCCChHHHHHHHHHHhhccCCchh
Q 011414          176 NQLMRFFKLVQGH-L---SLDES-EENN----VRIS------EEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEV  240 (486)
Q Consensus       176 ~~l~~fl~~~~~~-~---~~~~~-~~~~----~~~~------~~~~~~s~~~~l~~~~l~~~l~~~l~~~i~~~~~~~~~  240 (486)
                      ..+.+++..+.+. .   ..... ....    ....      ......+..++++.+..++.++..+.+......  ..+
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~f~~~~~r~~~~~~~~~~~--~~p  197 (487)
T COG1233         120 EALARYLRLLARLYELLAALLLAPPRSELLLVPDTPERLLRLLGFSLTSALDFFRGRFGSELLRALLAYSAVYGG--APP  197 (487)
T ss_pred             HHHHHHHHHHHHhhHHHHhhcCCCchhhhhhccccHHHHHHHHHHhhhhHHHHHHHHhcCHHHHHHHHHHHHhcC--CCC
Confidence            5555555533221 1   00000 0000    0000      012235667777766556777777665432221  221


Q ss_pred             hhhhhchhhHHHHHHHHHHhhhcccCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeC
Q 011414          241 SEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA  320 (486)
Q Consensus       241 ~~~~~s~~~~l~~~~~~~~s~g~~g~~~g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~  320 (486)
                      .  ..+   ++..   ++..++ +..  | +.||+||++.|+++|.+.++++||+|+++++|++|.++  +|+.++|++.
T Consensus       198 ~--~~~---a~~~---~~~~~~-~~~--G-~~~p~GG~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~--~g~g~~~~~~  263 (487)
T COG1233         198 S--TPP---ALYL---LLSHLG-LSG--G-VFYPRGGMGALVDALAELAREHGGEIRTGAEVSQILVE--GGKGVGVRTS  263 (487)
T ss_pred             C--chh---HHHH---HHHHhc-ccC--C-eeeeeCCHHHHHHHHHHHHHHcCCEEECCCceEEEEEe--CCcceEEecc
Confidence            0  001   2222   221111 221  2 67999999999999999999999999999999999998  7777788888


Q ss_pred             CCcEEEcCEEEECCCC
Q 011414          321 SGQDILSHKLVLDPSF  336 (486)
Q Consensus       321 ~G~~i~A~~VI~~p~~  336 (486)
                      +|+.+.+|.||++.+.
T Consensus       264 ~g~~~~ad~vv~~~~~  279 (487)
T COG1233         264 DGENIEADAVVSNADP  279 (487)
T ss_pred             ccceeccceeEecCch
Confidence            8878999999976444

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=99.95  E-value=1e-25  Score=237.56  Aligned_cols=341  Identities=13%  Similarity=0.076  Sum_probs=190.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCcccccccccccccccc
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS  102 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (486)
                      .||||||||++||+||++|+++|++|+|||+++++||++++++++                                   
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~~-----------------------------------   46 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRR-----------------------------------   46 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceeccC-----------------------------------
Confidence            599999999999999999999999999999999999999998653                                   


Q ss_pred             CCCCceEeecCCCEEEec---ChHHHHHHHhcCcccccchhccccee-eeccCC-ceeecCCCHHHHhhc-ccCChHhHH
Q 011414          103 QHPRNFNLDVSGPRVLFC---ADHAVDLMLKSGASHYLEFKSIDATF-MLDADA-KLCSVPDSRAAIFKD-KSLGLMEKN  176 (486)
Q Consensus       103 ~~~~~~~idl~Gp~ll~~---~~~l~~~l~~~~~~~y~ef~~~~~~~-~~~~~g-~~~~vp~s~~~~f~~-~~l~~~~k~  176 (486)
                          +|.+|. |++++..   .+.+-+++.+.|+... ++...++.+ ++..|| ..+.++.+.+..... ....+.+.+
T Consensus        47 ----G~~fD~-G~~~~~~~~~~~~~~~~~~~lg~~~~-~~~~~d~~~~~~~~dg~~~~~~~~d~~~~~~~l~~~~p~~~~  120 (492)
T TIGR02733        47 ----GFTFDV-GATQVAGLEPGGIHARIFRELGIPLP-EAKILDPACAVDLPDGSEPIPLWHDPDRWQKERERQFPGSER  120 (492)
T ss_pred             ----CEEEee-cceEEEecCcCCHHHHHHHHcCCCCc-ccccCCCCcEEEECCCceEeeeecCHHHHHHHHHHHCCChHH
Confidence                366777 5887743   3345566667776521 123334332 233355 345555554322110 011122221


Q ss_pred             HHHH---HHHHHHhhcccCc----c-c----------cccccccccccCCcHHHHHHhc--CCChHHHHHHHHHHhhccC
Q 011414          177 QLMR---FFKLVQGHLSLDE----S-E----------ENNVRISEEDLDSPFAEFLTKM--KLPHKIKSIVLYAIAMADY  236 (486)
Q Consensus       177 ~l~~---fl~~~~~~~~~~~----~-~----------~~~~~~~~~~~~~s~~~~l~~~--~l~~~l~~~l~~~i~~~~~  236 (486)
                      .+..   ............+    . .          .........+...|+.+|++++  ..++.++.++......  +
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~--~  198 (492)
T TIGR02733       121 FWQLCSQLHQSNWRFAGRDPVLPPRNYWDLLQLVSALRPDTLLTGPLSLLTVADLLRLCGLGDDRRLRRFLDLQLKL--Y  198 (492)
T ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhcChhhhhhhhhhhhhHHHHHHHhCCCccHHHHHHHHHHHhh--h
Confidence            1111   1110000000000    0 0          0000000113357899999986  4577888876532221  1


Q ss_pred             CchhhhhhhchhhHHHHHHHHHHhhhcccCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEE
Q 011414          237 DQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKG  316 (486)
Q Consensus       237 ~~~~~~~~~s~~~~l~~~~~~~~s~g~~g~~~g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~g  316 (486)
                      ...+ ..+.++..++.    ++ .+.....  | ++||+||+++|+++|++.++.+||+|+++++|++|.++  ++++.+
T Consensus       199 ~~~~-~~~~~~~~~~~----~~-~~~~~~~--G-~~~~~GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~--~~~~~g  267 (492)
T TIGR02733       199 SQED-ADETAALYGAT----VL-QMAQAPH--G-LWHLHGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHTK--GGRAGW  267 (492)
T ss_pred             ccCC-hhhhhHHHHHH----Hh-hccccCC--C-ceeecCcHHHHHHHHHHHHHhcCCEEeCCceEEEEEEe--CCeEEE
Confidence            1111 01122222111    11 1111111  2 56899999999999999999999999999999999987  667677


Q ss_pred             EEeCCC-----cEEEcCEEEECCC-CCCCCCCcccchhhhhhhhh-hccCCCcceEEEEEEEecCCCCC-C-CCceEEEe
Q 011414          317 VRLASG-----QDILSHKLVLDPS-FTVPGSLASSHQQLQESFQA-FSLSDNKGKVARGICITRSSLKP-D-LSNFLVIF  387 (486)
Q Consensus       317 V~~~~G-----~~i~A~~VI~~p~-~~~~~l~~~~~~~l~~~~~~-l~~~~~~~~v~r~i~i~~~~~~~-~-~~~~~~~~  387 (486)
                      |++.+|     +++.||+||++.+ ..+.+|+ + ++.++..+.. +.+...........+.+++...+ . ..+....+
T Consensus       268 v~~~~~~~~~~~~~~ad~VI~~~~~~~~~~ll-~-~~~~~~~~~~~~~~~~~s~~~~~v~l~~~~~~~~~~~~~~~~~~~  345 (492)
T TIGR02733       268 VVVVDSRKQEDLNVKADDVVANLPPQSLLELL-G-PLGLPPGYRKRLKKLPEPSGAFVFYLGVKRAALPVDCPPHLQFLS  345 (492)
T ss_pred             EEEecCCCCceEEEECCEEEECCCHHHHHHhc-C-cccCCHHHHHHHhcCCCCCceEEEEEeecccccCCCCCcceeecc
Confidence            877665     5799999997532 2223443 1 1233322222 21211111122333445553211 1 11222222


Q ss_pred             CCCCCCCCCCceEEEEEeCCCCccCCCCeEEEEEEEeec
Q 011414          388 PPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCD  426 (486)
Q Consensus       388 p~~~~~~~~~~~v~v~~~~~~~~~~P~G~~vi~~~t~~~  426 (486)
                      .+       ...+|+...+.+++.+|+|+.++++++..+
T Consensus       346 ~~-------~~~~~v~~~~~d~~~aP~G~~~l~~~~~~~  377 (492)
T TIGR02733       346 DH-------QGSLFVSISQEGDGRAPQGEATLIASSFTD  377 (492)
T ss_pred             CC-------CceEEEEeCCccccCCCCCceEEEEEcCCC
Confidence            21       236888877777788999999998887653

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>TIGR02730 carot_isom carotene isomerase

Probab=99.95  E-value=1.3e-25  Score=236.67  Aligned_cols=342  Identities=14%  Similarity=0.145  Sum_probs=201.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCcccccccccccccccc
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS  102 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (486)
                      |||||||+|++||+||++|+++|++|+||||++.+||++++++.++                                  
T Consensus         1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G----------------------------------   46 (493)
T TIGR02730         1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFEREG----------------------------------   46 (493)
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEeccCC----------------------------------
Confidence            6999999999999999999999999999999999999999987644                                  


Q ss_pred             CCCCceEeecCCCEEEe------cChHHHHHHHhcCcccccchhccccee-eeccCCceeecCCCHHHHhhc-ccCChHh
Q 011414          103 QHPRNFNLDVSGPRVLF------CADHAVDLMLKSGASHYLEFKSIDATF-MLDADAKLCSVPDSRAAIFKD-KSLGLME  174 (486)
Q Consensus       103 ~~~~~~~idl~Gp~ll~------~~~~l~~~l~~~~~~~y~ef~~~~~~~-~~~~~g~~~~vp~s~~~~f~~-~~l~~~~  174 (486)
                           |.+|. |++++.      ....+.+.|...+.  .+++......+ +...+|..+.++.+.+..... ....+.+
T Consensus        47 -----~~fd~-g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~l~~~~P~~  118 (493)
T TIGR02730        47 -----YRFDV-GASMIFGFGDKGTTNLLTRALAAVGR--KLETIPDPVQIHYHLPNGLNVKVHREYDDFIQELVAKFPHE  118 (493)
T ss_pred             -----EEEEe-cchhheecCCcccccHHHHHHHHcCC--cccccCCCccEEEECCCCeeEeeecCHHHHHHHHHHHCchh
Confidence                 34444 344432      11233344444432  23343333222 222356566777666433321 1234677


Q ss_pred             HHHHHHHHHHHHhhcc------cCc-c-cccc--------cc--ccccccCCcHHHHHHhcCCChHHHHHHHH-HHhhcc
Q 011414          175 KNQLMRFFKLVQGHLS------LDE-S-EENN--------VR--ISEEDLDSPFAEFLTKMKLPHKIKSIVLY-AIAMAD  235 (486)
Q Consensus       175 k~~l~~fl~~~~~~~~------~~~-~-~~~~--------~~--~~~~~~~~s~~~~l~~~~l~~~l~~~l~~-~i~~~~  235 (486)
                      ...+.+|++.+.....      ... . ....        ..  ....+...++.++++++..++.+++++.. +.... 
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~-  197 (493)
T TIGR02730       119 KEGIRRFYDECWQVFNCLNSMELLSLEEPRYLFRVFFKHPLACLGLAKYLPQNAGDIARRYIRDPGLLKFIDIECFCWS-  197 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhccccChHHHHHHHhhchhhhhHHHHHhhccHHHHHHHhcCCHHHHHHHHHHHHhcc-
Confidence            7778887776443211      000 0 0000        00  01123347899999999999999997753 22221 


Q ss_pred             CCchhhhhhhchhhHHHHHHHHHHhhhcccCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEE
Q 011414          236 YDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYK  315 (486)
Q Consensus       236 ~~~~~~~~~~s~~~~l~~~~~~~~s~g~~g~~~g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~  315 (486)
                      ....   .+.+..   ..+..+.  ...++    .+.+|.||+++|+++|.+.++.+|++|+++++|++|.++  ++++.
T Consensus       198 ~~p~---~~~p~~---~~~~~~~--~~~~~----g~~~~~gG~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~--~~~~~  263 (493)
T TIGR02730       198 VVPA---DQTPMI---NAGMVFS--DRHYG----GINYPKGGVGQIAESLVKGLEKHGGQIRYRARVTKIILE--NGKAV  263 (493)
T ss_pred             CCCc---ccchhh---hHHHhhc--ccccc----eEecCCChHHHHHHHHHHHHHHCCCEEEeCCeeeEEEec--CCcEE
Confidence            1110   011221   1111111  11122    267899999999999999999999999999999999887  67888


Q ss_pred             EEEeCCCcEEEcCEEEEC--CCCCCCCCCcc--cchhhhhhhhhhccCCCcceEEEEEEEecCCCCCCC-CceEEEeCCC
Q 011414          316 GVRLASGQDILSHKLVLD--PSFTVPGSLAS--SHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDL-SNFLVIFPPR  390 (486)
Q Consensus       316 gV~~~~G~~i~A~~VI~~--p~~~~~~l~~~--~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~~~~~-~~~~~~~p~~  390 (486)
                      +|++.+|+++.||+||++  +..++..|+..  ..+..+..++.+..   ........+.++.++.+.. ....+.++..
T Consensus       264 gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~---s~s~~~~~l~l~~~~~p~~~~~~~~~~~~~  340 (493)
T TIGR02730       264 GVKLADGEKIYAKRIVSNATRWDTFGKLLKAENLPKKEKNWQRNYVK---SPSFLSLHLGVKADVLPPGTECHHILLEDW  340 (493)
T ss_pred             EEEeCCCCEEEcCEEEECCChHHHHHHhCCccccchhhHHHHhhccC---CCceEEEEEEecCccCCCCCCccEEecchh
Confidence            999999999999999975  33443344311  11111111122211   1123333444566543321 1122333421


Q ss_pred             CCCCCCCceEEEEEeCCC-CccCCCCeEEEEEEEe
Q 011414          391 SLFPEQVTSIRVLQLGGN-LAVCPLGMFVLYFSAL  424 (486)
Q Consensus       391 ~~~~~~~~~v~v~~~~~~-~~~~P~G~~vi~~~t~  424 (486)
                      .......+.+|+...+.. ++.+|+|+.++++.+.
T Consensus       341 ~~~~~~~~~~~v~~ps~~dps~aP~G~~~i~~~~~  375 (493)
T TIGR02730       341 TNLEKPQGTIFVSIPTLLDPSLAPEGHHIIHTFTP  375 (493)
T ss_pred             hccCCCCCeEEEEeCCCCCCCCCcCCcEEEEEecC
Confidence            111123567888877654 6889999999887664

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=99.94  E-value=8.4e-24  Score=221.47  Aligned_cols=351  Identities=15%  Similarity=0.153  Sum_probs=209.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhC----CCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCccccccccccc
Q 011414           22 AFDLIVIGTGLPESVISAAASAS----GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYA   97 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~----G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (486)
                      ..||||||||++||+||..|+++    |++|+|+|+++++||+++|.+.+                              
T Consensus         2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~------------------------------   51 (462)
T TIGR00562         2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKED------------------------------   51 (462)
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeC------------------------------
Confidence            36999999999999999999999    99999999999999999997532                              


Q ss_pred             cccccCCCCceEeecCCCEEEecCh-HHHHHHHhcCcccccchhcccceeeeccCCceeecCCCHHHHhhcccCChHhHH
Q 011414           98 SRLLSQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKN  176 (486)
Q Consensus        98 ~~~~~~~~~~~~idl~Gp~ll~~~~-~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s~~~~f~~~~l~~~~k~  176 (486)
                               +|.+|+ |+++++... .+.+++.++|+..+..+......+++..+|+++++|.+..+.++...+++.+|.
T Consensus        52 ---------g~~~e~-G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~  121 (462)
T TIGR00562        52 ---------GYLIER-GPDSFLERKKSAPDLVKDLGLEHVLVSDATGQRYVLVNRGKLMPVPTKIAPFVKTGLFSLGGKL  121 (462)
T ss_pred             ---------CEEEec-CccccccCChHHHHHHHHcCCCcccccCCCCceEEEECCCceecCCCChHHHhcCCCCCchhhH
Confidence                     355677 688886655 488889999987765443333345554238888888876666666656655544


Q ss_pred             HHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChHHHHHHHHHHhhccCCchhhhhhhchhhHHHHHHH
Q 011414          177 QLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLAL  256 (486)
Q Consensus       177 ~l~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~l~~~i~~~~~~~~~~~~~~s~~~~l~~~~~  256 (486)
                      .+.  +......              ....+.|+.+|+++.. .+.+.+.+...+....+..++  +++++..++.++..
T Consensus       122 ~~~--~~~~~~~--------------~~~~d~s~~e~l~~~~-g~~~~~~~~~p~~~~~~~~~~--~~ls~~~~~~~~~~  182 (462)
T TIGR00562       122 RAG--MDFIRPA--------------SPGKDESVEEFVRRRF-GDEVVENLIEPLLSGIYAGDP--SKLSLKSTFPKFYQ  182 (462)
T ss_pred             Hhh--hhhccCC--------------CCCCCcCHHHHHHHhc-CHHHHHHHHHHHhcccccCCH--HHhhHHHHhHHHHH
Confidence            332  1111000              0123589999998653 344333233222222233332  33566655544322


Q ss_pred             HHHh-------h------------hcccCCCcc-eEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEE
Q 011414          257 YNSS-------I------------GRFQNALGA-LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKG  316 (486)
Q Consensus       257 ~~~s-------~------------g~~g~~~g~-~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~g  316 (486)
                      ....       +            ..+....+. +.+++||+++|+++|++.+.  .++|+++++|++|..+  +++ +.
T Consensus       183 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~--~~~i~~~~~V~~I~~~--~~~-~~  257 (462)
T TIGR00562       183 TEQKHGSLILGMKKTRNLPQGSGLQLTAKKQGQDFQTLATGLETLPEEIEKRLK--LTKVYKGTKVTKLSHR--GSN-YT  257 (462)
T ss_pred             HHHhcCcHHHHHHhhcccCccccccccccccCCceEecchhHHHHHHHHHHHhc--cCeEEcCCeEEEEEec--CCc-EE
Confidence            2111       0            001111122 56789999999999887553  2789999999999876  333 46


Q ss_pred             EEeCCCcEEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhhccCCCcceEEEEEEEecCCC-CCCCCceEEEeCCCCCCC
Q 011414          317 VRLASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL-KPDLSNFLVIFPPRSLFP  394 (486)
Q Consensus       317 V~~~~G~~i~A~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~-~~~~~~~~~~~p~~~~~~  394 (486)
                      |++++|+++.||+||++ |...+..++.    +++...........+..+.+..+.+++++ ........+..|...   
T Consensus       258 v~~~~g~~~~ad~VI~t~P~~~~~~ll~----~~~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~---  330 (462)
T TIGR00562       258 LELDNGVTVETDSVVVTAPHKAAAGLLS----ELSNSASSHLDKIHSPPVANVNLGFPEGSVDGELEGFGFLISRSS---  330 (462)
T ss_pred             EEECCCcEEEcCEEEECCCHHHHHHHhc----ccCHHHHHHHhcCCCCceEEEEEEEchHHcCCCCCceEEEccCCC---
Confidence            77788888999999964 5443344321    12222222223334566777777787763 322233444444332   


Q ss_pred             CCCceEEEEEeCCC--CccCCCCeEEEEEEEeecc-----CcchHHHHHHHHHHHHhh
Q 011414          395 EQVTSIRVLQLGGN--LAVCPLGMFVLYFSALCDE-----VNQGKKLLHAALSALQKL  445 (486)
Q Consensus       395 ~~~~~v~v~~~~~~--~~~~P~G~~vi~~~t~~~~-----~~~~~~~l~~~~~~l~~~  445 (486)
                        ...+....+++.  +..+|+|..++.+......     ....++.++.+++.|.+.
T Consensus       331 --~~~~~~~i~~s~~~p~~~p~g~~~l~~~~~g~~~~~~~~~~~ee~~~~v~~~L~~~  386 (462)
T TIGR00562       331 --KFAILGCIFTSKLFPNRAPPGKTLLTAYIGGATDESIVDLSENEIINIVLRDLKKV  386 (462)
T ss_pred             --CCceEEEEEEccccCCcCCCCcEEEEEEeCCCCCccccCCCHHHHHHHHHHHHHHH
Confidence              112233333322  4678988777655432211     113345555555555543

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PLN02576 protoporphyrinogen oxidase

Probab=99.93  E-value=6.6e-23  Score=216.56  Aligned_cols=291  Identities=17%  Similarity=0.171  Sum_probs=180.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhC-CCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCcccccccccccc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS   98 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~-G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (486)
                      ..++||||||||++||+||++|+++ |++|+|||+++++||++.|++.+                               
T Consensus        10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~~~-------------------------------   58 (496)
T PLN02576         10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSED-------------------------------   58 (496)
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEeccC-------------------------------
Confidence            3567999999999999999999999 99999999999999999997643                               


Q ss_pred             ccccCCCCceEeecCCCEEEecChHHHHHHHhcCcccccchhcc-cceeeeccCCceeecCCCHHHHhhcccCChHhHHH
Q 011414           99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI-DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQ  177 (486)
Q Consensus        99 ~~~~~~~~~~~idl~Gp~ll~~~~~l~~~l~~~~~~~y~ef~~~-~~~~~~~~~g~~~~vp~s~~~~f~~~~l~~~~k~~  177 (486)
                              .|.+|. ||+.+...++.+..|.+.++.+++.|... ...|++. +|+++++|.+..+.+....+++.+|..
T Consensus        59 --------g~~~d~-G~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~-~g~~~~~p~~~~~~~~~~~~~~~~~~~  128 (496)
T PLN02576         59 --------GFIWEE-GPNSFQPSDPELTSAVDSGLRDDLVFPDPQAPRYVVW-NGKLRPLPSNPIDLPTFDLLSAPGKIR  128 (496)
T ss_pred             --------CeEEec-CCchhccCcHHHHHHHHcCChhheecCCCCceEEEEE-CCEEEEcCCChHHhcCcCcCChhHHHH
Confidence                    355676 58888777766666666688777665432 2335543 888999998876666666677666554


Q ss_pred             HHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChHHHHHHHHHHhhccCCchhhhhhhchhhHHHHHHHH
Q 011414          178 LMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALY  257 (486)
Q Consensus       178 l~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~l~~~i~~~~~~~~~~~~~~s~~~~l~~~~~~  257 (486)
                      +..-.  . .....          .....+.|+.+|+++. +.+.+.+.+...+....+..++  .++|+..+++.+..+
T Consensus       129 ~~~~~--~-~~~~~----------~~~~~~~sv~~~l~~~-~g~~~~~~~~~p~~~~~~~~~~--~~lS~~~~~~~~~~~  192 (496)
T PLN02576        129 AGLGA--F-GWKRP----------PPPGREESVGEFVRRH-LGDEVFERLIDPFVSGVYAGDP--SSLSMKAAFPKLWNL  192 (496)
T ss_pred             HhHHH--h-hccCC----------CCCCCCCcHHHHHHHh-cCHHHHHHHHHHHhCceecCCH--HHHhHHHHhHHHHHH
Confidence            32211  1 11000          0123468999999975 5555544443332222233333  346666655544332


Q ss_pred             HHhhhc--------c----------------c-CCCcceEeecCCcchHHHHHHHHHHHcC-cEEEeCCceeEEEEecCC
Q 011414          258 NSSIGR--------F----------------Q-NALGALIYPIYGQGELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNS  311 (486)
Q Consensus       258 ~~s~g~--------~----------------g-~~~g~~~~p~gG~~~L~qal~r~~~~~G-g~i~l~~~V~~I~~~~~~  311 (486)
                      ....|.        .                . .....+.+++||+++|+++|++   .+| ++|++|++|++|..+  +
T Consensus       193 e~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~L~~~la~---~l~~~~i~l~~~V~~I~~~--~  267 (496)
T PLN02576        193 EKRGGSIIGGAIKAIQEAKKNPKPEPRDPRLPKPKGQTVGSFRGGLQTLPDALAK---RLGKDKVKLNWKVLSLSKN--D  267 (496)
T ss_pred             HHhcCcHHHHHHHhhhhhcccccccccccccccccCCeeEeccchHHHHHHHHHH---hhCcCcEEcCCEEEEEEEC--C
Confidence            111000        0                0 0012256789999999998875   446 789999999999876  3


Q ss_pred             CeEEEEEe--CCCc-EEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhhccCCCcceEEEEEEEecCCC
Q 011414          312 GSYKGVRL--ASGQ-DILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL  376 (486)
Q Consensus       312 g~~~gV~~--~~G~-~i~A~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~  376 (486)
                      +..+.|++  .+|+ ++.||+||++ |...+..++.+..   ++..+.+ +...+..+.+..+.+++++
T Consensus       268 ~~~~~v~~~~~~g~~~~~ad~VI~a~P~~~l~~ll~~~~---~~~~~~l-~~~~~~~~~~v~l~~~~~~  332 (496)
T PLN02576        268 DGGYSLTYDTPEGKVNVTAKAVVMTAPLYVVSEMLRPKS---PAAADAL-PEFYYPPVAAVTTSYPKEA  332 (496)
T ss_pred             CCcEEEEEecCCCceeEEeCEEEECCCHHHHHHHhcccC---HHHHHHh-ccCCCCceEEEEEEEchHH
Confidence            32133433  3554 6999999964 5444344432212   2222223 2233445666666677753

>PRK07233 hypothetical protein; Provisional

Probab=99.93  E-value=5.2e-23  Score=213.61  Aligned_cols=348  Identities=15%  Similarity=0.144  Sum_probs=195.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCccccccccccccccccC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ  103 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (486)
                      +|||||||++||+||..|+++|++|+|||+++++||+++++..++                                   
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~g-----------------------------------   45 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGG-----------------------------------   45 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCC-----------------------------------
Confidence            599999999999999999999999999999999999999987543                                   


Q ss_pred             CCCceEeecCCCEEEec-ChHHHHHHHhcCcccccchhcccceeeeccCCceeecCCCHHHHhhcccCChHhHHHHHHHH
Q 011414          104 HPRNFNLDVSGPRVLFC-ADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFF  182 (486)
Q Consensus       104 ~~~~~~idl~Gp~ll~~-~~~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s~~~~f~~~~l~~~~k~~l~~fl  182 (486)
                          |.+|. |.++++. ...+.+++.+.|+.....+......+.+  +|+.++++ +...+++...+++.++..+...+
T Consensus        46 ----~~~d~-g~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  117 (434)
T PRK07233         46 ----LPIER-FYHHIFKSDEALLELLDELGLEDKLRWRETKTGYYV--DGKLYPLG-TPLELLRFPHLSLIDKFRLGLLT  117 (434)
T ss_pred             ----cchhh-hhhhhccccHHHHHHHHHcCCCCceeeccCceEEEE--CCeEecCC-CHHHHHcCCCCCHHHHHHhHHHH
Confidence                22233 2343332 3367788888888655555443332322  55555443 22344444555555555433222


Q ss_pred             HHHHhhcccCccccccccccccccCCcHHHHHHhcCCChHHHHHHHHHHhhccCCchhhhhhhchhhHHHHHHHHHHhhh
Q 011414          183 KLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIG  262 (486)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~l~~~i~~~~~~~~~~~~~~s~~~~l~~~~~~~~s~g  262 (486)
                      ...... .          ...+..+.++.+||+++..++..+.++.. +....+..++  +++++...+..+..+...  
T Consensus       118 ~~~~~~-~----------~~~~~~~~s~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~s~~~~~~~~~~~~~~--  181 (434)
T PRK07233        118 LLARRI-K----------DWRALDKVPAEEWLRRWSGEGVYEVFWEP-LLESKFGDYA--DDVSAAWLWSRIKRRGNR--  181 (434)
T ss_pred             Hhhhhc-c----------cccccccccHHHHHHHhcCHHHHHHHHHH-HHhcccCCCc--cccCHHHHHHHHhhhhcc--
Confidence            111110 0          01234568999999986544444444432 1111122222  235665554444322111  


Q ss_pred             cccCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC-CCCCCCCC
Q 011414          263 RFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGS  341 (486)
Q Consensus       263 ~~g~~~g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~-p~~~~~~l  341 (486)
                      ........+.+|+||++.|+++|.+.+...|++|+++++|++|..+  +++++++. .+|+++.||+||++ |...+.++
T Consensus       182 ~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~--~~~~~~~~-~~~~~~~ad~vI~a~p~~~~~~l  258 (434)
T PRK07233        182 RYSLFGEKLGYLEGGFATLIDALAEAIEARGGEIRLGTPVTSVVID--GGGVTGVE-VDGEEEDFDAVISTAPPPILARL  258 (434)
T ss_pred             ccccCCceEeccCCCHHHHHHHHHHHHHhcCceEEeCCCeeEEEEc--CCceEEEE-eCCceEECCEEEECCCHHHHHhh
Confidence            0000011267899999999999999999999999999999999876  55555554 67888999999964 43333444


Q ss_pred             CcccchhhhhhhhhhccCCCcceEEEEEEEecCCCCCCCCceEEEeCCCCCCCCCCceEEEEEeCC-CCccCCCCeEEEE
Q 011414          342 LASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGG-NLAVCPLGMFVLY  420 (486)
Q Consensus       342 ~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~v~~~~~-~~~~~P~G~~vi~  420 (486)
                      + +   +++.......+...........+-+++++.+   ...+.++....     ....+...+. ....+|+|+.+++
T Consensus       259 l-~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~s~~~~~~~~~g~~~~~  326 (434)
T PRK07233        259 V-P---DLPADVLARLRRIDYQGVVCMVLKLRRPLTD---YYWLNINDPGA-----PFGGVIEHTNLVPPERYGGEHLVY  326 (434)
T ss_pred             c-C---CCcHHHHhhhcccCccceEEEEEEecCCCCC---CceeeecCCCC-----CcceEEEecccCCccccCCceEEE
Confidence            3 1   1211111111222333445555556777643   22233221111     1111222332 2345667877766


Q ss_pred             EEEeeccC-----cchHHHHHHHHHHHHhh
Q 011414          421 FSALCDEV-----NQGKKLLHAALSALQKL  445 (486)
Q Consensus       421 ~~t~~~~~-----~~~~~~l~~~~~~l~~~  445 (486)
                      ++.++...     ...++.++.+++.|-+.
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~  356 (434)
T PRK07233        327 LPKYLPGDHPLWQMSDEELLDRFLSYLRKM  356 (434)
T ss_pred             EeeecCCCChhhcCCHHHHHHHHHHHHHHh
Confidence            55544321     12344555555555543

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=99.92  E-value=5.4e-23  Score=215.35  Aligned_cols=325  Identities=12%  Similarity=0.146  Sum_probs=190.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhC------CCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCcccccccccc
Q 011414           23 FDLIVIGTGLPESVISAAASAS------GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNY   96 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~------G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (486)
                      .+|||||||++||+||..|+++      |++|+|||+++++||+++|.+.+                             
T Consensus         2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~-----------------------------   52 (463)
T PRK12416          2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEK-----------------------------   52 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeC-----------------------------
Confidence            3699999999999999999986      48999999999999999997533                             


Q ss_pred             ccccccCCCCceEeecCCCEEEecC-hHHHHHHHhcCcccccchhcccceeeeccCCceeecCCC--------HHHHhhc
Q 011414           97 ASRLLSQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDS--------RAAIFKD  167 (486)
Q Consensus        97 ~~~~~~~~~~~~~idl~Gp~ll~~~-~~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s--------~~~~f~~  167 (486)
                                .|.+|+ |+++++.. ..+.+++.+.|+..+..+..-...|++. +|++.++|.+        ..+.++.
T Consensus        53 ----------g~~~e~-G~~~i~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~p~~~~~~~~~  120 (463)
T PRK12416         53 ----------DFIMES-GADSIVARNEHVMPLVKDLNLEEEMVYNETGISYIYS-DNTLHPIPSDTIFGIPMSVESLFSS  120 (463)
T ss_pred             ----------CEEEec-CcHHHhcCCHHHHHHHHHcCCccceecCCCCceEEEE-CCeEEECCCCCeecCCCChHHhhcC
Confidence                      245666 57777544 4577888999988766554433445554 5666666543        2233333


Q ss_pred             ccCChHhHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChHHHHHHHHHHhhccCCchhhhhhhch
Q 011414          168 KSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKT  247 (486)
Q Consensus       168 ~~l~~~~k~~l~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~l~~~i~~~~~~~~~~~~~~s~  247 (486)
                      ..++...|...      +......      .   .....+.|+.+|+++..-++..+.++. .+...-+..++  .++++
T Consensus       121 ~~~~~~~~~~~------~~~~~~~------~---~~~~~~~sv~~~l~~~~~~~~~~~~~~-p~~~~~~~~~~--~~ls~  182 (463)
T PRK12416        121 TLVSTKGKIVA------LKDFITK------N---KEFTKDTSLALFLESFLGKELVERQIA-PVLSGVYSGKL--NELTM  182 (463)
T ss_pred             CcCCHHHHHHh------hhhhccC------C---CCCCCCCCHHHHHHHhcCHHHHHHHHH-HHhcccccCCc--ccccH
Confidence            33433322211      1111100      0   012357899999997533333333332 21122233332  23555


Q ss_pred             hhHHHHHHHHHHhhhcc------------cCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEE
Q 011414          248 RDGINRLALYNSSIGRF------------QNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYK  315 (486)
Q Consensus       248 ~~~l~~~~~~~~s~g~~------------g~~~g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~  315 (486)
                      ...+..+..+....+.+            ......+.+++||+++|+++|++.+..  ++|+++++|++|..+  +++ +
T Consensus       183 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~--~~i~~~~~V~~I~~~--~~~-~  257 (463)
T PRK12416        183 ASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSFKGGLSTIIDRLEEVLTE--TVVKKGAVTTAVSKQ--GDR-Y  257 (463)
T ss_pred             HHhhHHHHHHHHhcCcHHHHHHHhhhccCCCCCCceEeeCCCHHHHHHHHHHhccc--ccEEcCCEEEEEEEc--CCE-E
Confidence            44444443333221110            011122778999999999999876543  689999999999876  444 5


Q ss_pred             EEEeCCCcEEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhhccCCCcceEEEEEEEecCCCCC-CCCceEEEeCCCCCC
Q 011414          316 GVRLASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP-DLSNFLVIFPPRSLF  393 (486)
Q Consensus       316 gV~~~~G~~i~A~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~~~-~~~~~~~~~p~~~~~  393 (486)
                      .|++.+|+++.||+||++ |...+..|+  .+++++....++    ....+....+.++++... ......+++|+..  
T Consensus       258 ~v~~~~g~~~~ad~VI~a~p~~~~~~ll--~~~~l~~~~~~~----~~~~~~~v~l~~~~~~~~~~~~g~G~l~~~~~--  329 (463)
T PRK12416        258 EISFANHESIQADYVVLAAPHDIAETLL--QSNELNEQFHTF----KNSSLISIYLGFDILDEQLPADGTGFIVTENS--  329 (463)
T ss_pred             EEEECCCCEEEeCEEEECCCHHHHHhhc--CCcchhHHHhcC----CCCceEEEEEEechhhcCCCCCceEEEeeCCC--
Confidence            777788888999999964 544444543  345555554444    234566666677765321 1223444555432  


Q ss_pred             CCCCceEEEEEeCCC--CccCCCCeEEEEEE
Q 011414          394 PEQVTSIRVLQLGGN--LAVCPLGMFVLYFS  422 (486)
Q Consensus       394 ~~~~~~v~v~~~~~~--~~~~P~G~~vi~~~  422 (486)
                         .-.+-...+.+.  ...+|++..++.++
T Consensus       330 ---~~~~~~~~~~s~~~~~~~~~~~~l~~~~  357 (463)
T PRK12416        330 ---DLHCDACTWTSRKWKHTSGKQKLLVRMF  357 (463)
T ss_pred             ---CCeEEEEEeecCCCCCcCCCCeEEEEEE
Confidence               111112222322  23567777766654

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=99.92  E-value=1.3e-22  Score=211.75  Aligned_cols=325  Identities=14%  Similarity=0.168  Sum_probs=185.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCC--CcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCccccccccccccccc
Q 011414           24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL  101 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G--~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (486)
                      +|||||||++||+||..|+++|  ++|+|||+++++||+++|++.++                                 
T Consensus         2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~g---------------------------------   48 (451)
T PRK11883          2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDG---------------------------------   48 (451)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeCC---------------------------------
Confidence            6999999999999999999988  89999999999999999976432                                 


Q ss_pred             cCCCCceEeecCCCEEEecCh-HHHHHHHhcCcccccchhcccceeeeccCCceeecCCCH--------HHHhhcccCCh
Q 011414          102 SQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSR--------AAIFKDKSLGL  172 (486)
Q Consensus       102 ~~~~~~~~idl~Gp~ll~~~~-~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s~--------~~~f~~~~l~~  172 (486)
                            +.+|+ |++.++..+ .+.+++.+.|+..+..+......+++. +|+.+.+|...        ...+..+.++.
T Consensus        49 ------~~~d~-G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~-~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~  120 (451)
T PRK11883         49 ------FPIEL-GPESFLARKPSAPALVKELGLEDELVANTTGQSYIYV-NGKLHPIPPGTVMGIPTSIAPFLFAGLVSP  120 (451)
T ss_pred             ------eEEec-ChHHhcCCcHHHHHHHHHcCCccceecCCCCcceEEE-CCeEEECCCCCeeccCCCchhhhcCCCCCH
Confidence                  34566 465443333 577888888887654433212234443 67777776421        01111112221


Q ss_pred             HhHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChHHHHHHHHHHhhccCCchhhhhhhchhhHHH
Q 011414          173 MEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGIN  252 (486)
Q Consensus       173 ~~k~~l~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~l~~~i~~~~~~~~~~~~~~s~~~~l~  252 (486)
                      .++.+.      ......         .......++|+.+||++. +++...+.+...+....+..++  +++++...+.
T Consensus       121 ~~~~~~------~~~~~~---------~~~~~~~~~s~~e~l~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~  182 (451)
T PRK11883        121 IGKLRA------AADLRP---------PRWKPGQDQSVGAFFRRR-FGDEVVENLIEPLLSGIYAGDI--DTLSLRATFP  182 (451)
T ss_pred             HHHHHh------hCcccC---------CCCCCCCCcCHHHHHHHh-ccHHHHHHHHHHhhceeecCCh--HHccHHHhHH
Confidence            111110      001000         001234578999999863 4444433333222222233232  3355555444


Q ss_pred             HHHHHHHhhh-----------ccc-CCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeC
Q 011414          253 RLALYNSSIG-----------RFQ-NALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA  320 (486)
Q Consensus       253 ~~~~~~~s~g-----------~~g-~~~g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~  320 (486)
                      .+..+....+           ... .....+.++++|++.|+++|++.+...  +|+++++|++|..+  ++. +.|.++
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~l~~~--~i~~~~~V~~i~~~--~~~-~~v~~~  257 (451)
T PRK11883        183 QLAQAEDKYGSLLRGMRKALPKEKKKTKGVFGTLKGGLQSLIEALEEKLPAG--TIHKGTPVTKIDKS--GDG-YEIVLS  257 (451)
T ss_pred             HHHHHHHhcCcHHHHHHhhccccCCCCCCceEeeccHHHHHHHHHHHhCcCC--eEEeCCEEEEEEEc--CCe-EEEEEC
Confidence            4333222111           000 001225689999999999887755332  89999999999876  443 567778


Q ss_pred             CCcEEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhhccCCCcceEEEEEEEecCCCCCCCCceEEEeCCCCCCCCCCce
Q 011414          321 SGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTS  399 (486)
Q Consensus       321 ~G~~i~A~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~  399 (486)
                      +|+++.||+||++ |...+.++.  .++++.+..    +...+..+.+..+.+++++...+....+.+++..     +.+
T Consensus       258 ~g~~~~~d~vI~a~p~~~~~~l~--~~~~~~~~~----~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~-----~~~  326 (451)
T PRK11883        258 NGGEIEADAVIVAVPHPVLPSLF--VAPPAFALF----KTIPSTSVATVALAFPESATNLPDGTGFLVARNS-----DYT  326 (451)
T ss_pred             CCCEEEcCEEEECCCHHHHHHhc--cChhHHHHH----hCCCCCceEEEEEEeccccCCCCCceEEEecCCC-----CCc
Confidence            9999999999965 443334442  223332222    2334556777777788885322333344444321     122


Q ss_pred             EEEE-EeCCC-CccCCCCeEEEEEEE
Q 011414          400 IRVL-QLGGN-LAVCPLGMFVLYFSA  423 (486)
Q Consensus       400 v~v~-~~~~~-~~~~P~G~~vi~~~t  423 (486)
                      +... ..+.. ...+|+|..++.++.
T Consensus       327 ~~~~~~~s~~~~~~~p~g~~~~~~~~  352 (451)
T PRK11883        327 ITACTWTSKKWPHTTPEGKVLLRLYV  352 (451)
T ss_pred             EEEEEeEcCcCCCCCCCCcEEEEEec
Confidence            3322 22322 466788887777655

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=99.91  E-value=2.5e-22  Score=203.44  Aligned_cols=347  Identities=16%  Similarity=0.176  Sum_probs=213.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCC--CcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCccccccccccccccc
Q 011414           24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL  101 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G--~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (486)
                      .|+|||||++||+||++|+++|  .+|+|||+.+++||..+|+..+                                  
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~----------------------------------   47 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKID----------------------------------   47 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeC----------------------------------
Confidence            4899999999999999999999  9999999999999999998654                                  


Q ss_pred             cCCCCceEeecCCCEEEecC-hHHHHHHHhcCcccccchhcccceeeeccCCceeecCCCHHHHhhcccCChHhHHHHHH
Q 011414          102 SQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMR  180 (486)
Q Consensus       102 ~~~~~~~~idl~Gp~ll~~~-~~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s~~~~f~~~~l~~~~k~~l~~  180 (486)
                           .|.+|. ||+.++.+ ...++++.++|.++.+.+..-...|++. +|+++++|...  ++.-+.+.......+.+
T Consensus        48 -----G~~~e~-G~~~f~~~~~~~l~li~eLGled~l~~~~~~~~~i~~-~gkl~p~P~~~--i~~ip~~~~~~~~~~~~  118 (444)
T COG1232          48 -----GFLFER-GPHHFLARKEEILDLIKELGLEDKLLWNSTARKYIYY-DGKLHPIPTPT--ILGIPLLLLSSEAGLAR  118 (444)
T ss_pred             -----CEEEee-chhheecchHHHHHHHHHhCcHHhhccCCcccceEee-CCcEEECCccc--eeecCCccccchhHHHH
Confidence                 355666 57777665 5789999999999888877655556665 89999999874  44433332212233333


Q ss_pred             HHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChHHHHHHHHHHhhccCCchhhhhhhchhhHHHHHHHHHHh
Q 011414          181 FFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS  260 (486)
Q Consensus       181 fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~l~~~i~~~~~~~~~~~~~~s~~~~l~~~~~~~~s  260 (486)
                      ++.......           ......+.++.+|++++. .+++.+.+...+.-.-|..+.  +.+|+..+...+..-...
T Consensus       119 ~~~~~~~~~-----------~~~~~~d~sv~~f~r~~f-G~ev~~~~~~pll~giy~~~~--~~LS~~~~~p~~~~~e~~  184 (444)
T COG1232         119 ALQEFIRPK-----------SWEPKQDISVGEFIRRRF-GEEVVERFIEPLLEGIYAGDA--DKLSAAAAFPILARAERK  184 (444)
T ss_pred             HHHhhhccc-----------CCCCCCCcCHHHHHHHHH-hHHHHHHHHHHHhhchhcCCH--HHhhHHHhcchhhhhhhh
Confidence            332221110           012456789999998532 233333222111111122222  335665322222221111


Q ss_pred             hhcc-------cC-----CCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcC
Q 011414          261 IGRF-------QN-----ALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSH  328 (486)
Q Consensus       261 ~g~~-------g~-----~~g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~  328 (486)
                      .+..       +.     ..+.|.+++||+++|+++|.+.+...   |+++++|+.|..+  ... +++.+.+|.++.||
T Consensus       185 ~~s~~~g~~~~~~~~~~~~~~~~~~~~gG~~~l~~al~~~l~~~---i~~~~~V~~i~~~--~~~-~~~~~~~g~~~~~D  258 (444)
T COG1232         185 YGSLLRGAKKEGLPKQSLKKEKFGYLRGGLQSLIEALAEKLEAK---IRTGTEVTKIDKK--GAG-KTIVDVGGEKITAD  258 (444)
T ss_pred             hcchhhhhhhccCcccccccccccccCccHHHHHHHHHHHhhhc---eeecceeeEEEEc--CCc-cEEEEcCCceEEcc
Confidence            1111       00     01247789999999999999877666   9999999999876  222 45556899999999


Q ss_pred             EEEEC-CCCCCCCCCcccchhhhhhhhhhccCCCcceEEEEEEEecCC-CCCCCCceEEEeCCCCCCCCCCceEEEEEeC
Q 011414          329 KLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSS-LKPDLSNFLVIFPPRSLFPEQVTSIRVLQLG  406 (486)
Q Consensus       329 ~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~-~~~~~~~~~~~~p~~~~~~~~~~~v~v~~~~  406 (486)
                      .||++ |.+.+..++.+  .....   .+.+ .....++.++..++++ ....++...+.+|....     . +.....+
T Consensus       259 ~VI~t~p~~~l~~ll~~--~~~~~---~~~~-~~~~s~~~vv~~~~~~~~~~~~~~~g~~iad~~~-----~-~~a~~~~  326 (444)
T COG1232         259 GVISTAPLPELARLLGD--EAVSK---AAKE-LQYTSVVTVVVGLDEKDNPALPDGYGLLIADDDP-----Y-ILAITFH  326 (444)
T ss_pred             eEEEcCCHHHHHHHcCC--cchhh---hhhh-ccccceEEEEEEeccccccCCCCceEEEEecCCC-----c-ceeEEEe
Confidence            99964 55555555422  11111   1111 1233466666667774 33334566777764321     1 3333333


Q ss_pred             CC--CccCCCCeEEEEEEEeeccCc-----chHHHHHHHHHHHHhh
Q 011414          407 GN--LAVCPLGMFVLYFSALCDEVN-----QGKKLLHAALSALQKL  445 (486)
Q Consensus       407 ~~--~~~~P~G~~vi~~~t~~~~~~-----~~~~~l~~~~~~l~~~  445 (486)
                      +.  +...|+|+.++++........     ..++.++.+++.|-+.
T Consensus       327 S~~~p~~~p~g~~ll~~~~~~~g~~~~~~~~dee~~~~~l~~L~~~  372 (444)
T COG1232         327 SNKWPHEAPEGKTLLRVEFGGPGDESVSTMSDEELVAAVLDDLKKL  372 (444)
T ss_pred             cccCCCCCCCCcEEEEEEeecCCCcchhccCHHHHHHHHHHHHHHH
Confidence            33  467799999999987654211     1356666666666654

>PRK07208 hypothetical protein; Provisional

Probab=99.91  E-value=2.1e-21  Score=204.25  Aligned_cols=353  Identities=15%  Similarity=0.182  Sum_probs=194.2

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCcccccccccccc
Q 011414           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS   98 (486)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (486)
                      ||...||||||||++||+||..|+++|++|+|+|+++++||++.|...++                              
T Consensus         1 ~~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~~g------------------------------   50 (479)
T PRK07208          1 MTNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYKG------------------------------   50 (479)
T ss_pred             CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeeccCC------------------------------
Confidence            35678999999999999999999999999999999999999999875432                              


Q ss_pred             ccccCCCCceEeecCCCEEEecCh-HHHHHHHhcCcccccchhcccceeeeccCCceeecCCCHHHHhhcccCChHhHHH
Q 011414           99 RLLSQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQ  177 (486)
Q Consensus        99 ~~~~~~~~~~~idl~Gp~ll~~~~-~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s~~~~f~~~~l~~~~k~~  177 (486)
                               |.+|. |+++++..+ .+.+++.+.+.......... ..+++. +|+...+|.+..+.+.  .+++.++..
T Consensus        51 ---------~~~d~-G~h~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~-~g~~~~~p~~~~~~l~--~~~~~~~~~  116 (479)
T PRK07208         51 ---------NRFDI-GGHRFFSKSPEVMDLWNEILPDDDFLLRPR-LSRIYY-RGKFFDYPLKAFDALK--NLGLWRTAK  116 (479)
T ss_pred             ---------ceEcc-CCceeccCCHHHHHHHHHhcCCCccccccc-cceEEE-CCEEecCCcchhHHHH--hCCHhHHHH
Confidence                     34566 577766544 56777777775222222111 123332 6788888865433332  233333222


Q ss_pred             HHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChH-HHHHHH-HHHhhccCCchhhhhhhchhhHHHHH-
Q 011414          178 LMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHK-IKSIVL-YAIAMADYDQEVSEYVLKTRDGINRL-  254 (486)
Q Consensus       178 l~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~-l~~~l~-~~i~~~~~~~~~~~~~~s~~~~l~~~-  254 (486)
                      ..  ...+....            .....+.++.+|+++. +.+. .+.++. +...+  +..++  +++++..++.++ 
T Consensus       117 ~~--~~~~~~~~------------~~~~~~~s~~e~l~~~-~g~~~~~~~~~p~~~~~--~~~~~--~~~s~~~~~~~~~  177 (479)
T PRK07208        117 CG--ASYLKARL------------RPRKEEDSFEDWVINR-FGRRLYSTFFKGYTEKV--WGVPC--DEISADWAAQRIK  177 (479)
T ss_pred             HH--HHHHHHhc------------CCCCCCCCHHHHHHHh-hCHHHHHHHHHHhhhhh--hCCCh--HHCCChHHhCccc
Confidence            11  11111110            0012468999999963 3333 333332 22222  22232  235555433221 


Q ss_pred             --------HHHHHhh-h-------cccCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEE
Q 011414          255 --------ALYNSSI-G-------RFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVR  318 (486)
Q Consensus       255 --------~~~~~s~-g-------~~g~~~g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~  318 (486)
                              ...+... +       ..+.....+.||+||+++|+++|.+.++..|++|++|++|++|..+. ++.++++.
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gG~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~-~~~v~~~~  256 (479)
T PRK07208        178 GLSLGKAIRNALRRSLGLKRRNKEVETSLIEEFRYPKLGPGQLWETAAEKLEALGGKVVLNAKVVGLHHDG-DGRIAVVV  256 (479)
T ss_pred             CCCHHHHHHHHhhhcccccccCCCccccceeEEeCCCCCcchHHHHHHHHHHHcCCEEEeCCEEEEEEEcC-CcEEEEEE
Confidence                    1111111 0       00100123778999999999999999999999999999999998872 34344444


Q ss_pred             e--CCCc--EEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhhccCCCcceEEEEEEEecCCCCCCCCceEEEeCCCCCC
Q 011414          319 L--ASGQ--DILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLF  393 (486)
Q Consensus       319 ~--~~G~--~i~A~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~~~~~~~~~~~~p~~~~~  393 (486)
                      .  .+|+  ++.||+||++ |...+.+++.   ++++.......+......+..+.+.++++.... . ..+.+|+....
T Consensus       257 ~~~~~g~~~~~~ad~VI~a~p~~~l~~~l~---~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~-~-~~~~~~~~~~~  331 (479)
T PRK07208        257 VNDTDGTEETVTADQVISSMPLRELVAALD---PPPPPEVRAAAAGLRYRDFITVGLLVKELNLFP-D-NWIYIHDPDVK  331 (479)
T ss_pred             EEcCCCCEEEEEcCEEEECCCHHHHHHhcC---CCCCHHHHHHHhCCCcceeEEEEEEecCCCCCC-C-ceEEecCCCCc
Confidence            3  2454  5899999975 4332233321   122222222222333444555555667663211 1 23334432211


Q ss_pred             CCCCceEEEEEeCC-CCccCCCCe-EEEEEEEeecc-----CcchHHHHHHHHHHHHhh
Q 011414          394 PEQVTSIRVLQLGG-NLAVCPLGM-FVLYFSALCDE-----VNQGKKLLHAALSALQKL  445 (486)
Q Consensus       394 ~~~~~~v~v~~~~~-~~~~~P~G~-~vi~~~t~~~~-----~~~~~~~l~~~~~~l~~~  445 (486)
                         .  -.+..++. +...+|+|+ ..+.+...+..     ....++.++.+++.|..+
T Consensus       332 ---~--~r~~~~~~~~~~~~p~g~~~~l~~~~~~~~~~~~~~~~deel~~~~~~~L~~l  385 (479)
T PRK07208        332 ---V--GRLQNFNNWSPYLVPDGRDTWLGLEYFCFEGDDLWNMSDEDLIALAIQELARL  385 (479)
T ss_pred             ---c--ceecccccCCcccCCCCCceEEEEEEEccCCCccccCCHHHHHHHHHHHHHHc
Confidence               0  11222222 246679987 44433332221     112356677777776663

>PLN02612 phytoene desaturase

Probab=99.91  E-value=2.5e-21  Score=206.20  Aligned_cols=295  Identities=15%  Similarity=0.156  Sum_probs=182.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCccccccccccccccc
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL  101 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (486)
                      ..||+|||+|++||+||++|+++|++|+|+|+++++||++.++...                                  
T Consensus        93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~----------------------------------  138 (567)
T PLN02612         93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDE----------------------------------  138 (567)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcC----------------------------------
Confidence            4689999999999999999999999999999999999999997531                                  


Q ss_pred             cCCCCceEeecCCCEEEecC-hHHHHHHHhcCcccccchhcccceeeecc-CCcee--e----cCCC---HHHHhh-ccc
Q 011414          102 SQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDA-DAKLC--S----VPDS---RAAIFK-DKS  169 (486)
Q Consensus       102 ~~~~~~~~idl~Gp~ll~~~-~~l~~~l~~~~~~~y~ef~~~~~~~~~~~-~g~~~--~----vp~s---~~~~f~-~~~  169 (486)
                          .++.+|. |+++++.. ..+.++|.+.|+...++|......+.+.. ++...  .    .|..   ..++++ ...
T Consensus       139 ----~G~~~D~-G~h~~~g~~~~~~~ll~elG~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~P~~l~~~~~~l~~~~~  213 (567)
T PLN02612        139 ----DGDWYET-GLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILRNNEM  213 (567)
T ss_pred             ----CCCEEcC-CceEEeCCCchHHHHHHHhCCcccceecccceEEEecCCCCceeeCcCchhcCChhhhhHHHHhcCcc
Confidence                1234555 57776543 35788889999987777665443332211 12222  1    2222   112222 234


Q ss_pred             CChHhHHHHHH-HHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChHHHHHHHHHHhhccCCchhhhhhhchh
Q 011414          170 LGLMEKNQLMR-FFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTR  248 (486)
Q Consensus       170 l~~~~k~~l~~-fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~l~~~i~~~~~~~~~~~~~~s~~  248 (486)
                      +++.+|.++.. ++.....          ......++.+.|+.+|+++++.++.+.+-+...+...-+..++  +++|+.
T Consensus       214 ls~~~kl~~~~~~~~~~~~----------~~~~~~~~d~~Sv~e~l~~~~~~~~~~~~~~~~l~~~~~~~~p--~~~S~~  281 (567)
T PLN02612        214 LTWPEKIKFAIGLLPAIVG----------GQAYVEAQDGLSVKEWMRKQGVPDRVNDEVFIAMSKALNFINP--DELSMQ  281 (567)
T ss_pred             CCHHHHHHHHHhhhHHhcc----------cchhhhhcCcCcHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCH--HHhhHH
Confidence            44444443221 1110000          0011224557899999999999987765332222111112222  235666


Q ss_pred             hHHHHHHHHHHhhhcccCCCcceEeecCCc-chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEc
Q 011414          249 DGINRLALYNSSIGRFQNALGALIYPIYGQ-GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILS  327 (486)
Q Consensus       249 ~~l~~~~~~~~s~g~~g~~~g~~~~p~gG~-~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A  327 (486)
                      ..+..+..++..  +.+   ....++.|+. ..|+++|++.++.+|++|++|++|++|..++ ++++++|++.+|+++.|
T Consensus       282 ~~l~~l~~~l~~--~~g---s~~~~~~G~~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~-~g~v~~v~~~~G~~~~a  355 (567)
T PLN02612        282 CILIALNRFLQE--KHG---SKMAFLDGNPPERLCMPIVDHFQSLGGEVRLNSRIKKIELND-DGTVKHFLLTNGSVVEG  355 (567)
T ss_pred             HHHHHHHHHHhc--cCC---ceEeeecCCchHHHHHHHHHHHHhcCCEEEeCCeeeEEEECC-CCcEEEEEECCCcEEEC
Confidence            665555544321  222   1255677665 6799999998888999999999999998863 66677888889999999


Q ss_pred             CEEEEC-CCCCCCCCCcccc--hhhhhhhhhhccCCCcceEEEEEEEecCCCC
Q 011414          328 HKLVLD-PSFTVPGSLASSH--QQLQESFQAFSLSDNKGKVARGICITRSSLK  377 (486)
Q Consensus       328 ~~VI~~-p~~~~~~l~~~~~--~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~~  377 (486)
                      |+||++ |...+..|+....  .++....+.+    ....+.+..+.+++++.
T Consensus       356 d~VI~a~p~~~l~~Ll~~~~~~~~~~~~l~~l----~~~~v~~v~l~~dr~~~  404 (567)
T PLN02612        356 DVYVSATPVDILKLLLPDQWKEIPYFKKLDKL----VGVPVINVHIWFDRKLK  404 (567)
T ss_pred             CEEEECCCHHHHHHhCcchhcCcHHHHHHHhc----CCCCeEEEEEEECcccC
Confidence            999964 4444344432111  1223223222    24457777777899874

>TIGR02731 phytoene_desat phytoene desaturase

Probab=99.91  E-value=2.1e-21  Score=202.72  Aligned_cols=296  Identities=17%  Similarity=0.174  Sum_probs=179.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCccccccccccccccccC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ  103 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (486)
                      +|+|||+|++||+||++|+++|++|+|+|+++++||++.|+...                                    
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~------------------------------------   44 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDE------------------------------------   44 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECC------------------------------------
Confidence            58999999999999999999999999999999999999987421                                    


Q ss_pred             CCCceEeecCCCEEEecC-hHHHHHHHhcCcccccchhcccceeee-ccCCcee--ecC---CCH---HHHhh-cccCCh
Q 011414          104 HPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFML-DADAKLC--SVP---DSR---AAIFK-DKSLGL  172 (486)
Q Consensus       104 ~~~~~~idl~Gp~ll~~~-~~l~~~l~~~~~~~y~ef~~~~~~~~~-~~~g~~~--~vp---~s~---~~~f~-~~~l~~  172 (486)
                        .++.+|. |++++... ..+.++|.+.|+...+.|......|.. ..++...  ..|   ...   .++++ ...++.
T Consensus        45 --~g~~~d~-G~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (453)
T TIGR02731        45 --DGDWYET-GLHIFFGAYPNMLQLLKELNIEDRLQWKSHSMIFNQPDKPGTFSRFDFPDIPAPFNGVAAILRNNDMLTW  121 (453)
T ss_pred             --CCCEEEc-CcceeccCCchHHHHHHHcCCccceeecCCceEEecCCCCcceeeccCCCCCCCHHHHHHHhcCcCCCCH
Confidence              1234566 46766443 367788888998776666543332221 1122222  112   111   12222 223455


Q ss_pred             HhHHHHHHHH-HHHHhhcccCccccccccccccccCCcHHHHHHhcCCChHHHHHHHHHHhhccCCchhhhhhhchhhHH
Q 011414          173 MEKNQLMRFF-KLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGI  251 (486)
Q Consensus       173 ~~k~~l~~fl-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~l~~~i~~~~~~~~~~~~~~s~~~~l  251 (486)
                      .+|.++..-+ ......          .+...++.+.|+.+|+++.+.++.+++.+...+....+..++  .++|+...+
T Consensus       122 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~~~~~~p--~~~S~~~~~  189 (453)
T TIGR02731       122 PEKIKFAIGLLPAIVRG----------QKYVEEQDKYTVTEWLRKQGVPERVNDEVFIAMSKALNFINP--DELSMTVVL  189 (453)
T ss_pred             HHHHHHHHHhHHHHhcC----------ccchhhhccCCHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCH--HHHHHHHHH
Confidence            5554433211 111000          011234567999999999999988766433222111122232  346777776


Q ss_pred             HHHHHHHHhhhcccCCCcceEeecCC-cchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCc-----EE
Q 011414          252 NRLALYNSSIGRFQNALGALIYPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ-----DI  325 (486)
Q Consensus       252 ~~~~~~~~s~g~~g~~~g~~~~p~gG-~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~-----~i  325 (486)
                      ..+..++.  ..++.   ...+..|| ++.++++|.+.++..|++|++|++|++|..++ ++++++|++.+|+     ++
T Consensus       190 ~~l~~~~~--~~~g~---~~~~~~g~~~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~-~~~v~~v~~~~~~~~~~~~~  263 (453)
T TIGR02731       190 TALNRFLQ--ERHGS---KMAFLDGAPPERLCQPIVDYITSRGGEVRLNSRLKEIVLNE-DGSVKHFVLADGEGQRRFEV  263 (453)
T ss_pred             HHHHHHHh--cCCCC---eeEeecCCChHHHHHHHHHHHHhcCCEEeCCCeeEEEEECC-CCCEEEEEEecCCCCceeEE
Confidence            66555442  22221   13345555 47899999999999999999999999998652 6667788887766     79


Q ss_pred             EcCEEEEC-CCCCCCCCCcccchhhhhhhhhhccCCCcceEEEEEEEecCCCCC
Q 011414          326 LSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP  378 (486)
Q Consensus       326 ~A~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~~~  378 (486)
                      .||.||++ |...+.+++ +....-....+.+. ......+.++.+.+++++..
T Consensus       264 ~a~~VI~a~p~~~~~~lL-~~~~~~~~~~~~~~-~~~~~~~~~v~l~~~~~~~~  315 (453)
T TIGR02731       264 TADAYVSAMPVDIFKLLL-PQPWKQMPFFQKLN-GLEGVPVINVHIWFDRKLTT  315 (453)
T ss_pred             ECCEEEEcCCHHHHHhhC-chhhhcCHHHHHhh-cCCCCcEEEEEEEEccccCC
Confidence            99999964 444444553 21110011112221 12244678888889998753

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=99.88  E-value=2e-20  Score=195.58  Aligned_cols=268  Identities=17%  Similarity=0.184  Sum_probs=171.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCccccccccccccccccC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ  103 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (486)
                      +|+|||+|++||++|..|+++|++|+|+|+++++||+++++...                                    
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~------------------------------------   44 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDG------------------------------------   44 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecC------------------------------------
Confidence            58999999999999999999999999999999999999986321                                    


Q ss_pred             CCCceEeecCCCEEEecCh-HHHHHHHhcCcccccchhcccceeeeccCCceee--------cC-CCHHHHhhcccCChH
Q 011414          104 HPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCS--------VP-DSRAAIFKDKSLGLM  173 (486)
Q Consensus       104 ~~~~~~idl~Gp~ll~~~~-~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~--------vp-~s~~~~f~~~~l~~~  173 (486)
                        .+|.+|. |+++++... .+.+++.+.|+...+.+......|.. .+++...        .| .....+++.+.++..
T Consensus        45 --~g~~~d~-G~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~P~~~~~~~l~~~~ls~~  120 (474)
T TIGR02732        45 --DGNHIEM-GLHVFFGCYANLFRLMKKVGAEDNLLLKEHTHTFVN-KGGDIGELDFRFATGAPFNGLKAFFTTSQLKWV  120 (474)
T ss_pred             --CCceEee-ceEEecCchHHHHHHHHHcCCccccccccceeEEEc-CCCcccccccCCCCCCchhhhHHHhcCCCCCHH
Confidence              1345566 588876543 57778888888765544432222322 1333221        23 223466777888888


Q ss_pred             hHHHHHHHHHH---HHhhcccCccccccccccccccCCcHHHHHHhcCCChHHHHHHHHHHhhccCCchhhhhhhchhhH
Q 011414          174 EKNQLMRFFKL---VQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDG  250 (486)
Q Consensus       174 ~k~~l~~fl~~---~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~l~~~i~~~~~~~~~~~~~~s~~~~  250 (486)
                      +|.++.+.+..   ...... ..   ...+......+.|+.+|+++++.++.+.+.+...++...+..++  +++|+..+
T Consensus       121 dklr~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~Pll~~~~~~~~--~~~Sa~~~  194 (474)
T TIGR02732       121 DKLRNALALGTSPIVRGLVD-YD---GAMKTIRDLDKISFAEWFLSHGGSLGSIKRMWDPIAYALGFIDC--ENISARCM  194 (474)
T ss_pred             HHHHHHHHhhhhHHHhhccc-cc---hhhhhhhhhccccHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCH--HHHHHHHH
Confidence            88775543311   111100 00   00011223456999999999998876444333332222222232  34677776


Q ss_pred             HHHHHHHHHhhhcccCCCcceEeecCCcch-HHHHHHHHHHHcCcEEEeCCceeEEEEecC-CC--eEEEEEeCCC---c
Q 011414          251 INRLALYNSSIGRFQNALGALIYPIYGQGE-LPQAFCRRAAVKGCLYVLRMPVISLLTDQN-SG--SYKGVRLASG---Q  323 (486)
Q Consensus       251 l~~~~~~~~s~g~~g~~~g~~~~p~gG~~~-L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~-~g--~~~gV~~~~G---~  323 (486)
                      +..++.+.  .++.+   .-+.+++||.++ +.+.+.+.++..||+|+++++|++|..+.. ++  ++++|++.+|   +
T Consensus       195 ~~~~~~~~--~~~~~---s~~~~~~g~~~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~  269 (474)
T TIGR02732       195 LTIFMLFA--AKTEA---SKLRMLKGSPDKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKK  269 (474)
T ss_pred             HHHHHHHH--hCCCc---ceeeeecCCcchhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcce
Confidence            66555332  22333   126789999876 678899999999999999999999988621 12  3677777554   5


Q ss_pred             EEEcCEEEEC-CCCCCCCCC
Q 011414          324 DILSHKLVLD-PSFTVPGSL  342 (486)
Q Consensus       324 ~i~A~~VI~~-p~~~~~~l~  342 (486)
                      ++.||+||++ |......|+
T Consensus       270 ~~~aD~VVlA~p~~~~~~Ll  289 (474)
T TIGR02732       270 VIKADAYVAACDVPGIKRLL  289 (474)
T ss_pred             EEECCEEEECCChHHHHhhC
Confidence            6899999964 544445554

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PLN02487 zeta-carotene desaturase

Probab=99.87  E-value=5.8e-20  Score=193.80  Aligned_cols=271  Identities=17%  Similarity=0.204  Sum_probs=171.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCcccccccccccccc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (486)
                      ...+|+|||+|++||++|..|+++|++|+|+|+++++||+++++...                                 
T Consensus        74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~---------------------------------  120 (569)
T PLN02487         74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDK---------------------------------  120 (569)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeec---------------------------------
Confidence            44699999999999999999999999999999999999999987421                                 


Q ss_pred             ccCCCCceEeecCCCEEEecC-hHHHHHHHhcCcccccchhcccceeeeccCCcee----ecC--CC---HHHHhhcccC
Q 011414          101 LSQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLC----SVP--DS---RAAIFKDKSL  170 (486)
Q Consensus       101 ~~~~~~~~~idl~Gp~ll~~~-~~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~----~vp--~s---~~~~f~~~~l  170 (486)
                           ..+.+|. |+++++.. ..+.++|.+.|+...+.+......|. ..+|+..    .+|  ..   ...+++...+
T Consensus       121 -----~g~~~e~-G~h~~~~~~~~~~~ll~~LGl~~~~~~~~~~~~~~-~~~g~~~~~~~~~p~~~pl~~~~~~l~~~~L  193 (569)
T PLN02487        121 -----NGNHIEM-GLHVFFGCYNNLFRLMKKVGADENLLVKDHTHTFV-NKGGDVGELDFRFPVGAPLHGIKAFLTTNQL  193 (569)
T ss_pred             -----CCcEEec-ceeEecCCcHHHHHHHHhcCCcccccccccceeEE-ecCCEEeeeccCCCCCchhhhHHHHHcCCCC
Confidence                 1244555 57776543 36788899999876655543222232 2244431    122  21   1245556777


Q ss_pred             ChHhHHHHHHHH--H-HHHhhcccCccccccccccccccCCcHHHHHHhcCCChHHHHHHHHHHhhccCCchhhhhhhch
Q 011414          171 GLMEKNQLMRFF--K-LVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKT  247 (486)
Q Consensus       171 ~~~~k~~l~~fl--~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~l~~~i~~~~~~~~~~~~~~s~  247 (486)
                      ++.+|.++..-+  . .+.....  ..  ...+.+....+.|+.+|+++++.++.+.+-+...++...+..++  +++|+
T Consensus       194 s~~dklr~~~~l~~~~~~~al~~--~~--~~~~~~~~~d~~sv~~~l~r~~g~~~~~~~l~dPll~~~~~~~~--d~~SA  267 (569)
T PLN02487        194 EPYDKARNALALATSPVVRALVD--PD--GAMRDIRDLDDISFSDWFTSHGGTRMSIKRMWDPIAYALGFIDC--DNISA  267 (569)
T ss_pred             CHHHHHhhcccccccchhhhccC--cc--ccccccccccCCcHHHHHHHhCCCHHHHHHHHHHHHHHhhCCCH--HHHHH
Confidence            777776653211  1 0011000  00  00011223456999999999888875444333333332233333  44677


Q ss_pred             hhHHHHHHHHHHhhhcccCCCcceEeecCCcch-HHHHHHHHHHHcCcEEEeCCceeEEEEecC-CC--eEEEEEe---C
Q 011414          248 RDGINRLALYNSSIGRFQNALGALIYPIYGQGE-LPQAFCRRAAVKGCLYVLRMPVISLLTDQN-SG--SYKGVRL---A  320 (486)
Q Consensus       248 ~~~l~~~~~~~~s~g~~g~~~g~~~~p~gG~~~-L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~-~g--~~~gV~~---~  320 (486)
                      ..++..+..+.  .+..+   +-+.||+||.++ |++.+++.++..||+|+++++|++|..+.+ ++  ++++|++   .
T Consensus       268 ~~~~~vl~~~~--~~~~~---~~l~~~~Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~  342 (569)
T PLN02487        268 RCMLTIFSLFA--TKTEA---SLLRMLKGSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKAT  342 (569)
T ss_pred             HHHHHHHHHHh--hcCCc---ceeeecCCCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCC
Confidence            76666553221  11111   226799999995 999999999999999999999999998731 22  3788887   3


Q ss_pred             CCcEEEcCEEEEC-CCCCCCCCC
Q 011414          321 SGQDILSHKLVLD-PSFTVPGSL  342 (486)
Q Consensus       321 ~G~~i~A~~VI~~-p~~~~~~l~  342 (486)
                      +++++.||.||++ |...+.+|+
T Consensus       343 ~~~~~~aD~VV~A~p~~~~~~Ll  365 (569)
T PLN02487        343 EKEIVKADAYVAACDVPGIKRLL  365 (569)
T ss_pred             CceEEECCEEEECCCHHHHHHhC
Confidence            4557899999964 444445554

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=99.87  E-value=4.9e-21  Score=186.94  Aligned_cols=71  Identities=32%  Similarity=0.379  Sum_probs=63.7

Q ss_pred             ceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEECCC--CCCCCCC
Q 011414          270 ALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS--FTVPGSL  342 (486)
Q Consensus       270 ~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~p~--~~~~~l~  342 (486)
                      .+.||+||||+++.++++.+..+|++|.+++.|++|..+  +|+++||+++||++++++.||+|..  .++.+|+
T Consensus       255 ~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd--~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLl  327 (561)
T KOG4254|consen  255 GWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLD--SGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLL  327 (561)
T ss_pred             cccCCCCChhHHHHHHHHHHHhccceeeehhhhhheecc--CCeEEEEEecCCcEEEeeeeecCCchHHHHHHhC
Confidence            478999999999999999999999999999999999998  7999999999999999999997643  4555554

>PLN02268 probable polyamine oxidase

Probab=99.83  E-value=3e-19  Score=185.58  Aligned_cols=277  Identities=13%  Similarity=0.134  Sum_probs=158.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCcccccccccccccccc
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS  102 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (486)
                      .+|||||||++||+||..|.++|++|+|||+++++||++.|....                                   
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~~~-----------------------------------   45 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYSF-----------------------------------   45 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecCcC-----------------------------------
Confidence            379999999999999999999999999999999999999985422                                   


Q ss_pred             CCCCceEeecCCCEEEec---ChHHHHHHHhcCcccccchhcccceeeeccCCceeecCCCHHHHhhcccCChHhHHHH-
Q 011414          103 QHPRNFNLDVSGPRVLFC---ADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL-  178 (486)
Q Consensus       103 ~~~~~~~idl~Gp~ll~~---~~~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s~~~~f~~~~l~~~~k~~l-  178 (486)
                          .+.+|+ |++++..   ..++.+++.+.|+..+-..  .+..+++..+...+.+....     ...++......+ 
T Consensus        46 ----g~~~d~-G~~~i~~~~~~~~~~~l~~~lgl~~~~~~--~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~  113 (435)
T PLN02268         46 ----GFPVDM-GASWLHGVCNENPLAPLIGRLGLPLYRTS--GDNSVLYDHDLESYALFDMD-----GNQVPQELVTKVG  113 (435)
T ss_pred             ----CcccCC-CCeeEeccCCCchHHHHHHHhCCceEecc--CCccccccccccccceecCC-----CCCCCHHHHHHHH
Confidence                234566 6888753   2357788888888544211  11111111010100000000     001111111112 


Q ss_pred             ---HHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCC-C------hHHHHHHHHHH-hhc-cCCchhhhhhhc
Q 011414          179 ---MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKL-P------HKIKSIVLYAI-AMA-DYDQEVSEYVLK  246 (486)
Q Consensus       179 ---~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l-~------~~l~~~l~~~i-~~~-~~~~~~~~~~~s  246 (486)
                         .+++..+....            .....+.|+.+|++++.. .      ...++++.+.+ .+. -+..++  +++|
T Consensus       114 ~~~~~~~~~~~~~~------------~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ls  179 (435)
T PLN02268        114 ETFERILEETEKVR------------DEHEEDMSLLQAISIVLERHPELRLEGLAHEVLQWYLCRMEGWFAADA--DTIS  179 (435)
T ss_pred             HHHHHHHHHHHHHH------------hccCCCcCHHHHHHHHhhhCcccccchHHHHHHHHHHHHHHHHhCCCh--HhCc
Confidence               22222221110            012456789998765321 1      12233332211 010 122222  2233


Q ss_pred             hhhHHHHHHHHHHhhhcccCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEE
Q 011414          247 TRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDIL  326 (486)
Q Consensus       247 ~~~~l~~~~~~~~s~g~~g~~~g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~  326 (486)
                      +...       . ....+.   |...++.+|++.|+++|++     |..|+++++|++|..+  ++. +.|++.+|+++.
T Consensus       180 ~~~~-------~-~~~~~~---g~~~~~~~G~~~l~~~l~~-----~~~i~~~~~V~~i~~~--~~~-v~v~~~~g~~~~  240 (435)
T PLN02268        180 LKSW-------D-QEELLE---GGHGLMVRGYDPVINTLAK-----GLDIRLNHRVTKIVRR--YNG-VKVTVEDGTTFV  240 (435)
T ss_pred             hhhc-------C-CccccC---CCceeecCCHHHHHHHHhc-----cCceeCCCeeEEEEEc--CCc-EEEEECCCcEEE
Confidence            3210       0 000010   1124678899999998854     5579999999999876  333 467778898999


Q ss_pred             cCEEEEC-CCCCCCCCCcccchhhhhhhhhhccCCCcceEEEEEEEecCCCCCC
Q 011414          327 SHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPD  379 (486)
Q Consensus       327 A~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~~~~  379 (486)
                      ||+||+. |...+......+.|++|+.+....++..++.+.|.++.+++++-+.
T Consensus       241 ad~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~~~~~g~~~Kv~l~f~~~fw~~  294 (435)
T PLN02268        241 ADAAIIAVPLGVLKANIIKFEPELPEWKEEAISDLGVGIENKIALHFDSVFWPN  294 (435)
T ss_pred             cCEEEEecCHHHHhcCcceecCCCCHHHHHHHHhCCccceeEEEEEeCCCCCCC
Confidence            9999954 5544433223466778777666556667788899998999985443

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=99.83  E-value=5.1e-18  Score=175.27  Aligned_cols=276  Identities=16%  Similarity=0.163  Sum_probs=168.1

Q ss_pred             HHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCccccccccccccccccCCCCceEeecCCC
Q 011414           36 VISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGP  115 (486)
Q Consensus        36 ~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~idl~Gp  115 (486)
                      +||.+|+++|++|+|||+++++||++.|++.++.                                     .+.+|. |+
T Consensus         1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~~~g~-------------------------------------~~~~d~-G~   42 (419)
T TIGR03467         1 SAAVELARAGARVTLFEARPRLGGRARSFEDGGL-------------------------------------GQTIDN-GQ   42 (419)
T ss_pred             ChHHHHHhCCCceEEEecCCCCCCceeEeecCCC-------------------------------------Ccceec-CC
Confidence            4899999999999999999999999999875431                                     123566 57


Q ss_pred             EEEecC-hHHHHHHHhcCcccccchhcccceeeeccCCce--e---ecCCC---HHHHhhcccCChHhHHHHHHHHHHHH
Q 011414          116 RVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKL--C---SVPDS---RAAIFKDKSLGLMEKNQLMRFFKLVQ  186 (486)
Q Consensus       116 ~ll~~~-~~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~--~---~vp~s---~~~~f~~~~l~~~~k~~l~~fl~~~~  186 (486)
                      +.++.. ..+.+++.+.|+.....+.. ....++..++..  .   ++|..   ...+.+...+++.++.++.+++..+.
T Consensus        43 ~~~~~~~~~~~~l~~~lgl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  121 (419)
T TIGR03467        43 HVLLGAYTNLLALLRRIGAEPRLQGPR-LPLPFYDPGGRLSRLRLSRLPAPLHLARGLLRAPGLSWADKLALARALLALR  121 (419)
T ss_pred             EEEEcccHHHHHHHHHhCCchhhhccc-CCcceecCCCCceeecCCCCCCCHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence            777653 46788888889877655421 221222222221  1   12221   11233456677777777766654433


Q ss_pred             hhcccCccccccccccccccCCcHHHHHHhcCCChHHHHHHHHHHhhccCCchhhhhhhchhhHHHHHHHHHHhhhcccC
Q 011414          187 GHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQN  266 (486)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~l~~~i~~~~~~~~~~~~~~s~~~~l~~~~~~~~s~g~~g~  266 (486)
                      ...            ..++.+.|+.+|+++++.++.+.+.+...+....+..++  +++|+..++..+..   .+.....
T Consensus       122 ~~~------------~~~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~--~~~s~~~~~~~~~~---~~~~~~~  184 (419)
T TIGR03467       122 RTR------------FRALDDTTVGDWLQAAGQSERLIERLWEPLLLSALNTPP--ERASAALAAKVLRD---SFLAGRA  184 (419)
T ss_pred             hcC------------ccccCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHHH---HHhcCCC
Confidence            211            123457899999999888877776544322222233333  33566554443322   1211111


Q ss_pred             CCcceEeecCCcchHH-HHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC-CCCCCCCCCcc
Q 011414          267 ALGALIYPIYGQGELP-QAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSLAS  344 (486)
Q Consensus       267 ~~g~~~~p~gG~~~L~-qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~-p~~~~~~l~~~  344 (486)
                       ...+.||+||++++. ++|.+.++..|++|++|++|++|..+  ++++..+...+|+++.||+||++ |...+..++ +
T Consensus       185 -~~~~~~~~gG~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~~--~~~~~~~~~~~g~~~~~d~vi~a~p~~~~~~ll-~  260 (419)
T TIGR03467       185 -ASDLLLPRVPLSELFPEPARRWLDSRGGEVRLGTRVRSIEAN--AGGIRALVLSGGETLPADAVVLAVPPRHAASLL-P  260 (419)
T ss_pred             -cceeeeeCCCHHHHHHHHHHHHHHHcCCEEEcCCeeeEEEEc--CCcceEEEecCCccccCCEEEEcCCHHHHHHhC-C
Confidence             112789999998776 55888888899999999999999887  44433222357888999999964 544444543 2


Q ss_pred             cchhhhhhhhhhccCCCcceEEEEEEEecCCC
Q 011414          345 SHQQLQESFQAFSLSDNKGKVARGICITRSSL  376 (486)
Q Consensus       345 ~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~  376 (486)
                       ++...   ..+ +...+..+.+..+.+++++
T Consensus       261 -~~~~~---~~l-~~~~~~~~~~v~l~~~~~~  287 (419)
T TIGR03467       261 -GEDLG---ALL-TALGYSPITTVHLRLDRAV  287 (419)
T ss_pred             -CchHH---HHH-hhcCCcceEEEEEEeCCCc
Confidence             11221   122 2224455667777788886

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>PLN02529 lysine-specific histone demethylase 1

Probab=99.82  E-value=1.4e-17  Score=179.38  Aligned_cols=279  Identities=14%  Similarity=0.115  Sum_probs=165.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCcccccccccccccc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (486)
                      ...||+|||+|++||+||..|+++|++|+|||+++++||++.|..+.+                                
T Consensus       159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~--------------------------------  206 (738)
T PLN02529        159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGR--------------------------------  206 (738)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeecccC--------------------------------
Confidence            567999999999999999999999999999999999999999975421                                


Q ss_pred             ccCCCCceEeecCCCEEEecCh--HHHHHHHhcCcccccchhcccceeeeccCCceeecCCCHHHHhhcccCChHhHHHH
Q 011414          101 LSQHPRNFNLDVSGPRVLFCAD--HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (486)
Q Consensus       101 ~~~~~~~~~idl~Gp~ll~~~~--~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s~~~~f~~~~l~~~~k~~l  178 (486)
                         ....+.+|+ |++++....  ++..+..+.|+..+. ..  +...++..+|........  .     .+   + ..+
T Consensus       207 ---~g~~~~~Dl-Gaswi~g~~~npl~~la~~lgl~~~~-~~--~~~~~~~~~G~~v~~~~~--~-----~~---~-~~~  268 (738)
T PLN02529        207 ---KGQFAAVDL-GGSVITGIHANPLGVLARQLSIPLHK-VR--DNCPLYKPDGALVDKEID--S-----NI---E-FIF  268 (738)
T ss_pred             ---CCCceEEec-CCeeccccccchHHHHHHHhCCCccc-cC--CCceEEeCCCcCcchhhh--h-----hH---H-HHH
Confidence               001245677 688885432  455666666654321 11  111133335543311100  0     00   0 012


Q ss_pred             HHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcC------CChHHHHHHHHHHhhccCCchhhhhhhchhhHHH
Q 011414          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMK------LPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGIN  252 (486)
Q Consensus       179 ~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~------l~~~l~~~l~~~i~~~~~~~~~~~~~~s~~~~l~  252 (486)
                      .+++..+..+....         .....+.|+.+|++++.      +++..+.++.+.++...+....+   ++..    
T Consensus       269 ~~~l~~~~~l~~~~---------~~~~~d~Sl~~~le~~~~~~~~~~t~~e~~ll~~~~~~le~a~~~~---~s~L----  332 (738)
T PLN02529        269 NKLLDKVTELRQIM---------GGFANDISLGSVLERLRQLYGVARSTEERQLLDWHLANLEYANAGC---LSDL----  332 (738)
T ss_pred             HHHHHHHHHHHHhc---------ccCccCCCHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhceecCCC---hHHh----
Confidence            22222222211000         01245688999998543      55555555544332111111110   1111    


Q ss_pred             HHHHHHHhhhcccCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE
Q 011414          253 RLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (486)
Q Consensus       253 ~~~~~~~s~g~~g~~~g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~  332 (486)
                      .+..+....+ +. ..|...++.||++.|+++|++     +..|+||++|++|..+  ++. +.|. .+++++.||+||+
T Consensus       333 Sl~~~~~~~~-~e-~~G~~~~i~GG~~~Li~aLA~-----~L~IrLnt~V~~I~~~--~dG-VtV~-t~~~~~~AD~VIV  401 (738)
T PLN02529        333 SAAYWDQDDP-YE-MGGDHCFLAGGNWRLINALCE-----GVPIFYGKTVDTIKYG--NDG-VEVI-AGSQVFQADMVLC  401 (738)
T ss_pred             hhhHhhhccc-cc-cCCceEEECCcHHHHHHHHHh-----cCCEEcCCceeEEEEc--CCe-EEEE-ECCEEEEcCEEEE
Confidence            1112221111 11 113356789999999998875     2359999999999886  333 4565 4567899999997


Q ss_pred             C-CCCCCCCCCcccchhhhhhhhhhccCCCcceEEEEEEEecCCC
Q 011414          333 D-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL  376 (486)
Q Consensus       333 ~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~  376 (486)
                      + |...+.+....+.|+||+.+....+...++.+.|.++.++++|
T Consensus       402 TVPlgVLk~~~I~F~PpLP~~K~~AI~rL~yG~v~KV~L~F~~~F  446 (738)
T PLN02529        402 TVPLGVLKKRTIRFEPELPRRKLAAIDRLGFGLLNKVAMVFPSVF  446 (738)
T ss_pred             CCCHHHHHhccccCCCCCCHHHHHHHHcCCCceeEEEEEEeCCcc
Confidence            5 4444332223477888887776667778889999999999985

>PLN02676 polyamine oxidase

Probab=99.82  E-value=2.3e-18  Score=180.30  Aligned_cols=285  Identities=11%  Similarity=0.081  Sum_probs=161.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCC-cEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCcccccccccccc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS   98 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~-~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (486)
                      ...+||||||||++||+||..|+++|. +|+|||+++++||++.+....                               
T Consensus        24 ~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~-------------------------------   72 (487)
T PLN02676         24 KPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFA-------------------------------   72 (487)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCC-------------------------------
Confidence            457899999999999999999999998 699999999999999986543                               


Q ss_pred             ccccCCCCceEeecCCCEEEec-----ChHHHHHHHhcCccccc-chhcccceeeeccCCceeecCCCHHHHhhcccCCh
Q 011414           99 RLLSQHPRNFNLDVSGPRVLFC-----ADHAVDLMLKSGASHYL-EFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGL  172 (486)
Q Consensus        99 ~~~~~~~~~~~idl~Gp~ll~~-----~~~l~~~l~~~~~~~y~-ef~~~~~~~~~~~~g~~~~vp~s~~~~f~~~~l~~  172 (486)
                              .+.+|+ |++++..     ...+.+++.+.|+..+. .+... ...++..+|+.+  +.   +...      
T Consensus        73 --------g~~~d~-g~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~-~~~~~~~~g~~~--~~---~~~~------  131 (487)
T PLN02676         73 --------GVSVEL-GANWVEGVGGPESNPIWELANKLKLRTFYSDFDNL-SSNIYKQDGGLY--PK---KVVQ------  131 (487)
T ss_pred             --------CeEEec-CCEEEEcccCcccChHHHHHHhcCCceeecCcccc-ceeEECCCCCCC--CH---HHHH------
Confidence                    234555 4676632     34677788888876542 22221 222333345433  11   1000      


Q ss_pred             HhHHHHHHHHHHHHhhcccCccccccccccccccCCcH--HHHHHhcC-CChHHHHHHHHHHhhccCCchhhhhhhchhh
Q 011414          173 MEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPF--AEFLTKMK-LPHKIKSIVLYAIAMADYDQEVSEYVLKTRD  249 (486)
Q Consensus       173 ~~k~~l~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~l~~~~-l~~~l~~~l~~~i~~~~~~~~~~~~~~s~~~  249 (486)
                      .-...+.++...+.......      .  ..++.+.++  .+++.+.. ..+..+. ..+......+..++  ..+|+..
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~S~~~  200 (487)
T PLN02676        132 KSMKVADASDEFGENLSISL------S--AKKAVDISILTAQRLFGQVPKTPLEMV-IDYYNYDYEFAEPP--RVTSLKN  200 (487)
T ss_pred             HHHHHHHHHHHHHHHHHHhh------c--ccCCCCccHHHHHHHHhhCCCCHHHHH-HHHHhccceeccCc--cccchhh
Confidence            00011111111111111000      0  112334555  33444322 2221111 11111101011111  1123322


Q ss_pred             HHHHHHHHHHhhhcccCCCcceEee--cCCcchHHHHHHHHHHH------cCcEEEeCCceeEEEEecCCCeEEEEEeCC
Q 011414          250 GINRLALYNSSIGRFQNALGALIYP--IYGQGELPQAFCRRAAV------KGCLYVLRMPVISLLTDQNSGSYKGVRLAS  321 (486)
Q Consensus       250 ~l~~~~~~~~s~g~~g~~~g~~~~p--~gG~~~L~qal~r~~~~------~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~  321 (486)
                      .+.     ...+..+|.   .-.+.  .+|++.|+++|++....      .+.+|+||++|++|..+  ++. +.|++.+
T Consensus       201 ~~~-----~~~~~~~g~---~~~~~~~~~G~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~--~~g-V~V~~~~  269 (487)
T PLN02676        201 TEP-----NPTFVDFGE---DEYFVADPRGYESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYS--KNG-VTVKTED  269 (487)
T ss_pred             cCc-----ccccccCCC---ceEEeecCCCHHHHHHHHHhhcccccccccCCCceecCCEeeEEEEc--CCc-EEEEECC
Confidence            110     001111221   12233  68999999998875422      24689999999999886  333 5788889


Q ss_pred             CcEEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhhccCCCcceEEEEEEEecCCCCC
Q 011414          322 GQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP  378 (486)
Q Consensus       322 G~~i~A~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~~~  378 (486)
                      |++++||+||+. |...+.+....++|+||..+....+...++.+.|.++.+++||=+
T Consensus       270 G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP~~k~~ai~~l~~g~~~Kv~l~f~~~FW~  327 (487)
T PLN02676        270 GSVYRAKYVIVSVSLGVLQSDLIKFKPPLPDWKIEAIYQFDMAVYTKIFLKFPYKFWP  327 (487)
T ss_pred             CCEEEeCEEEEccChHHhccCceEEeCCCCHHHHHHHHhCCceeeEEEEEEeCCCCCC
Confidence            999999999965 544444311358889998777666777788999999999998543

>PLN02568 polyamine oxidase

Probab=99.80  E-value=6.9e-18  Score=178.00  Aligned_cols=299  Identities=10%  Similarity=0.064  Sum_probs=163.4

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCC-----CcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCcccccc
Q 011414           18 IEPTAFDLIVIGTGLPESVISAAASASG-----KSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVE   92 (486)
Q Consensus        18 ~~~~~~DViIIGaGl~GL~aA~~La~~G-----~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (486)
                      +++..+||||||||++||+||..|+++|     ++|+|||+++++||+++|+.+.                         
T Consensus         1 ~~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~~~-------------------------   55 (539)
T PLN02568          1 MVAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSEFG-------------------------   55 (539)
T ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEEeC-------------------------
Confidence            3556789999999999999999999988     9999999999999999997543                         


Q ss_pred             ccccccccccCCCCceEeecCCCEEEec--ChHHHHHHHhcCccccc-chhccc----ceeeeccCCceeecCCCHHHHh
Q 011414           93 ISNYASRLLSQHPRNFNLDVSGPRVLFC--ADHAVDLMLKSGASHYL-EFKSID----ATFMLDADAKLCSVPDSRAAIF  165 (486)
Q Consensus        93 ~~~~~~~~~~~~~~~~~idl~Gp~ll~~--~~~l~~~l~~~~~~~y~-ef~~~~----~~~~~~~~g~~~~vp~s~~~~f  165 (486)
                                    .|.+|+ |++++..  ...+.+++.+.|+.... .|...+    ....+..+|.  .++.   ++.
T Consensus        56 --------------g~~~d~-G~~~~~g~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~---~~~  115 (539)
T PLN02568         56 --------------GERIEM-GATWIHGIGGSPVYKIAQEAGSLESDEPWECMDGFPDRPKTVAEGGF--EVDP---SIV  115 (539)
T ss_pred             --------------CeEEec-CCceeCCCCCCHHHHHHHHhCCccccCcceecccccccceEEccCCc--CCCH---HHH
Confidence                          244566 5777753  34677888888875442 222211    1112222332  1111   010


Q ss_pred             hcccCChHhHHHHHHHHHHHHhhcccCccc--cccccc---cc----cccCCcHHHHHHhcCCChHHHHHHHHHHhhccC
Q 011414          166 KDKSLGLMEKNQLMRFFKLVQGHLSLDESE--ENNVRI---SE----EDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADY  236 (486)
Q Consensus       166 ~~~~l~~~~k~~l~~fl~~~~~~~~~~~~~--~~~~~~---~~----~~~~~s~~~~l~~~~l~~~l~~~l~~~i~~~~~  236 (486)
                      .      .-...+..++..+..........  .....+   ..    ...+.++.+||++.- ...+.....-.+ ...+
T Consensus       116 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~Sl~~fl~~~l-~~~~~~~~~p~~-~~~~  187 (539)
T PLN02568        116 E------SISTLFRGLMDDAQGKLIEPSEVDEVDFVKLAAKAARVCESGGGGSVGSFLRRGL-DAYWDSVSADEQ-IKGY  187 (539)
T ss_pred             H------HHHHHHHHHHHHhhcccccccccccccccccchhccchhccCCCCcHHHHHHHHH-HHHHhhcccchh-hccc
Confidence            0      00111222222222110000000  000000   00    012358888887411 000000000000 0000


Q ss_pred             CchhhhhhhchhhHHHHHHHHHH-----------hh---hcccCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCce
Q 011414          237 DQEVSEYVLKTRDGINRLALYNS-----------SI---GRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPV  302 (486)
Q Consensus       237 ~~~~~~~~~s~~~~l~~~~~~~~-----------s~---g~~g~~~g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V  302 (486)
                      ..+.  .+.+....+..+..+..           +.   ..+...+|.+.++.||++.|+++|++.+  .++.|++|++|
T Consensus       188 ~~~~--~~~~~~~~~~~~~~~e~~~~~~~~ls~ls~~~~~~~~~~~g~~~~i~gG~~~Li~~La~~L--~~~~I~ln~~V  263 (539)
T PLN02568        188 GGWS--RKLLEEAIFTMHENTQRTYTSADDLSTLDLAAESEYRMFPGEEITIAKGYLSVIEALASVL--PPGTIQLGRKV  263 (539)
T ss_pred             cchh--HHHHHHHHHHHHHHhhccccccccHhhccccccCcceecCCCeEEECCcHHHHHHHHHhhC--CCCEEEeCCeE
Confidence            0000  00111111111111110           00   1111112446788999999999997744  35689999999


Q ss_pred             eEEEEecCCCeEEEEEeCCCcEEEcCEEEEC-CCCCCCCCC----cccchhhhhhhhhhccCCCcceEEEEEEEecCCC
Q 011414          303 ISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSL----ASSHQQLQESFQAFSLSDNKGKVARGICITRSSL  376 (486)
Q Consensus       303 ~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~-p~~~~~~l~----~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~  376 (486)
                      ++|..+  ++. +.|++++|+++.||+||++ |...+.+-.    ..++|+||+.+....+...++.+.|.++.++++|
T Consensus       264 ~~I~~~--~~~-v~V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i~F~P~LP~~k~~Ai~~l~~g~~~Ki~l~f~~~f  339 (539)
T PLN02568        264 TRIEWQ--DEP-VKLHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFSPPLPDFKTDAISRLGFGVVNKLFVELSPRP  339 (539)
T ss_pred             EEEEEe--CCe-EEEEEcCCCEEEcCEEEEcCCHHHHhhccccccceecCCCCHHHHHHHHhcCCceeeEEEEEecCCC
Confidence            999886  333 5677889999999999975 544433210    1378889887766557777888999999999985

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=99.80  E-value=7.5e-17  Score=174.42  Aligned_cols=282  Identities=13%  Similarity=0.105  Sum_probs=164.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCcccccccccccccc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (486)
                      ...+|||||||++||+||..|++.|++|+|+|+++++||++.++...+.                               
T Consensus       237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~~g~-------------------------------  285 (808)
T PLN02328        237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKGD-------------------------------  285 (808)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccccCCC-------------------------------
Confidence            4579999999999999999999999999999999999999999875430                               


Q ss_pred             ccCCCCceEeecCCCEEEecC--hHHHHHHHhcCcccccchhcccceeeeccCCceeecCCCHHHHhhcccCChHhHHHH
Q 011414          101 LSQHPRNFNLDVSGPRVLFCA--DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (486)
Q Consensus       101 ~~~~~~~~~idl~Gp~ll~~~--~~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s~~~~f~~~~l~~~~k~~l  178 (486)
                          .-.+.+|+ |++++...  ..+..++.+.|+..+. ......  ++..+|+.+.....  +        ..+ ..+
T Consensus       286 ----~~~~~~d~-Gas~i~g~~~npl~~l~~~lgl~~~~-~~~~~~--~~~~dG~~~~~~~~--~--------~v~-~~f  346 (808)
T PLN02328        286 ----GVVAAADL-GGSVLTGINGNPLGVLARQLGLPLHK-VRDICP--LYLPDGKAVDAEID--S--------KIE-ASF  346 (808)
T ss_pred             ----CcceeccC-CceeecCCCccHHHHHHHHcCCceEe-cCCCce--EEeCCCcCcchhhh--h--------hHH-HHH
Confidence                01234566 57877543  2566677777764331 111111  22235543321100  0        001 122


Q ss_pred             HHHHHHHHhhcccCccccccccccccccCCcHHHHHHhc------CCChHHHHHHHHHHhhccCCchhhhhhhchhhHHH
Q 011414          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKM------KLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGIN  252 (486)
Q Consensus       179 ~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~------~l~~~l~~~l~~~i~~~~~~~~~~~~~~s~~~~l~  252 (486)
                      .+++..+.++.....   .    .....+.++.+|++++      ..++..+.++.+.++...+....      ....+ 
T Consensus       347 ~~lL~~~~klr~~~~---~----~~~~~D~SLg~~le~~~~~~~~~~~~~e~~Ll~w~lanlE~~~gs------~ls~L-  412 (808)
T PLN02328        347 NKLLDRVCKLRQAMI---E----EVKSVDVNLGTALEAFRHVYKVAEDPQERMLLNWHLANLEYANAS------LMSNL-  412 (808)
T ss_pred             HHHHHHHHHHHHhhh---h----cccccCcCHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHhccchh------hHHHH-
Confidence            333333222110000   0    0012457888888743      23444444433322221111100      00111 


Q ss_pred             HHHHHHHhhhcccCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE
Q 011414          253 RLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (486)
Q Consensus       253 ~~~~~~~s~g~~g~~~g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~  332 (486)
                      .+..+.... .+ ...+.+.+..||++.|+++|++.+   +  |++|++|++|..+  ++. +.| +.+|++++||+||+
T Consensus       413 Sl~~w~qd~-~~-e~~G~~~~v~GG~~~Li~aLa~~L---~--I~ln~~V~~I~~~--~dg-V~V-~~~G~~~~AD~VIv  481 (808)
T PLN02328        413 SMAYWDQDD-PY-EMGGDHCFIPGGNDTFVRELAKDL---P--IFYERTVESIRYG--VDG-VIV-YAGGQEFHGDMVLC  481 (808)
T ss_pred             Hhhhhhccc-cc-cCCCeEEEECCcHHHHHHHHHhhC---C--cccCCeeEEEEEc--CCe-EEE-EeCCeEEEcCEEEE
Confidence            111111100 01 111335678899999999997643   3  9999999999886  333 345 46788999999997


Q ss_pred             C-CCCCCCCCCcccchhhhhhhhhhccCCCcceEEEEEEEecCCCC
Q 011414          333 D-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK  377 (486)
Q Consensus       333 ~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~~  377 (486)
                      + |...+....+.+.|+||..+....++..++.+.|.++.++++|=
T Consensus       482 TvPl~vLk~~~I~F~P~LP~~K~~AI~~l~yG~~~KV~L~F~~~FW  527 (808)
T PLN02328        482 TVPLGVLKKGSIEFYPELPQRKKDAIQRLGYGLLNKVALLFPYNFW  527 (808)
T ss_pred             CCCHHHHhhcccccCCCCCHHHHHHHHcCCCcceEEEEEEeCCccc
Confidence            5 54444421124678888877666577788899999999999853

>PLN03000 amine oxidase

Probab=99.78  E-value=2.2e-16  Score=170.77  Aligned_cols=280  Identities=13%  Similarity=0.093  Sum_probs=159.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCcccccccccccccc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (486)
                      ...||||||+|++||.||..|++.|++|+|+|+++++||++.|..+++                                
T Consensus       183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~~~g--------------------------------  230 (881)
T PLN03000        183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEA--------------------------------  230 (881)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceecccC--------------------------------
Confidence            468999999999999999999999999999999999999999986542                                


Q ss_pred             ccCCCCceEeecCCCEEEecCh--HHHHHHHhcCcccccchhcccceeeeccCCceeecCCCHHHHhhcccCChHhHHHH
Q 011414          101 LSQHPRNFNLDVSGPRVLFCAD--HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (486)
Q Consensus       101 ~~~~~~~~~idl~Gp~ll~~~~--~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s~~~~f~~~~l~~~~k~~l  178 (486)
                         ....+.+|+ |.+++....  .+..++.+.|+..+ .+.....  ++..+|+..  +......         ....+
T Consensus       231 ---~~~~~~~Dl-Gas~i~g~~~npl~~L~~qlgl~l~-~~~~~~~--ly~~~Gk~v--~~~~~~~---------ve~~f  292 (881)
T PLN03000        231 ---NRVGAAADL-GGSVLTGTLGNPLGIIARQLGSSLY-KVRDKCP--LYRVDGKPV--DPDVDLK---------VEVAF  292 (881)
T ss_pred             ---CCCceEeec-CCeEEeCCCccHHHHHHHHcCCcee-ecCCCCe--EEEeCCcCC--chhhhhh---------HHHHH
Confidence               011356788 588886543  45556677777533 2222122  222366543  2211100         00111


Q ss_pred             HHHHHHHHhhcccCccccccccccccccCCcHHHHHHh------cCCChHHHHHHHHHHhhccCCchhhhhhhchhhHHH
Q 011414          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTK------MKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGIN  252 (486)
Q Consensus       179 ~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~------~~l~~~l~~~l~~~i~~~~~~~~~~~~~~s~~~~l~  252 (486)
                      .+++..+..+.....         ....+.++.++++.      ..+.+..+.++.+.++...+....      ....+.
T Consensus       293 n~lLd~~~~lr~l~~---------~~~~D~SLg~aLe~~~~~~g~~~t~e~~~Ll~w~lanLE~~~as------~ls~LS  357 (881)
T PLN03000        293 NQLLDKASKLRQLMG---------DVSMDVSLGAALETFRQVSGNDVATEEMGLFNWHLANLEYANAG------LVSKLS  357 (881)
T ss_pred             HHHHHHHHHHHHHhc---------ccCcCCcHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHhccccc------CHHHHH
Confidence            222222211110000         01123444443331      122333233332221111111000      000000


Q ss_pred             HHHHHHHhhhcccCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE
Q 011414          253 RLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (486)
Q Consensus       253 ~~~~~~~s~g~~g~~~g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~  332 (486)
                       +..+.... .+.. .+......||++.|+++|++.+     .|+|+++|++|..+  ++. +.|++ +++++.||+||+
T Consensus       358 -l~~wdqd~-~~e~-~G~~~~v~GG~~~LieaLa~~L-----~I~Ln~~Vt~I~~~--~dg-V~V~~-~~~~~~AD~VIv  425 (881)
T PLN03000        358 -LAFWDQDD-PYDM-GGDHCFLPGGNGRLVQALAENV-----PILYEKTVQTIRYG--SNG-VKVIA-GNQVYEGDMVLC  425 (881)
T ss_pred             -HHHhhhcc-cccC-CCceEEeCCCHHHHHHHHHhhC-----CcccCCcEEEEEEC--CCe-EEEEE-CCcEEEeceEEE
Confidence             11111101 1111 1235568899999999998644     39999999999886  333 45654 456899999997


Q ss_pred             C-CCCCCCCCCcccchhhhhhhhhhccCCCcceEEEEEEEecCCCC
Q 011414          333 D-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK  377 (486)
Q Consensus       333 ~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~~  377 (486)
                      + |...+..-.+.+.|+||+.+....++..++.+.|.++.++++|=
T Consensus       426 TVPlgVLk~~~I~F~PpLP~~K~~AI~rL~~G~l~KViL~Fd~~FW  471 (881)
T PLN03000        426 TVPLGVLKNGSIKFVPELPQRKLDCIKRLGFGLLNKVAMLFPYVFW  471 (881)
T ss_pred             cCCHHHHhhCceeeCCCCCHHHHHHHHcCCCcceEEEEEEeCCccc
Confidence            5 55544421135788999887776678888999999999999853

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=99.78  E-value=3e-18  Score=169.95  Aligned_cols=99  Identities=14%  Similarity=0.142  Sum_probs=76.8

Q ss_pred             eEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC-CCCCCCCCCcccchhh
Q 011414          271 LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSLASSHQQL  349 (486)
Q Consensus       271 ~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~-p~~~~~~l~~~~~~~l  349 (486)
                      .+.+.|||+.|++||+   +.+|..|.++++|.+|.++. +|  +.|++.+.+++.+|.||+. |..++..+  .++|.+
T Consensus       201 ~~~~~GGmd~la~Afa---~ql~~~I~~~~~V~rI~q~~-~g--V~Vt~~~~~~~~ad~~i~tiPl~~l~qI--~f~P~l  272 (450)
T COG1231         201 MLQRLGGMDQLAEAFA---KQLGTRILLNEPVRRIDQDG-DG--VTVTADDVGQYVADYVLVTIPLAILGQI--DFAPLL  272 (450)
T ss_pred             hhccCccHHHHHHHHH---HHhhceEEecCceeeEEEcC-Ce--EEEEeCCcceEEecEEEEecCHHHHhhc--ccCCCC
Confidence            4566799999999986   57899999999999998862 33  5777666578999999976 44443443  477777


Q ss_pred             hhhhhhhccCCCcceEEEEEEEecCCCC
Q 011414          350 QESFQAFSLSDNKGKVARGICITRSSLK  377 (486)
Q Consensus       350 ~~~~~~l~~~~~~~~v~r~i~i~~~~~~  377 (486)
                      +..+.+......++...|..+-+++||=
T Consensus       273 ~~~~~~a~~~~~y~~~~K~~v~f~rpFW  300 (450)
T COG1231         273 PAEYKQAAKGVPYGSATKIGVAFSRPFW  300 (450)
T ss_pred             CHHHHHHhcCcCcchheeeeeecCchhh
Confidence            7777776677788888898888999963

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=99.71  E-value=1.6e-15  Score=157.54  Aligned_cols=241  Identities=13%  Similarity=0.186  Sum_probs=145.5

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhC----CCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCcccccccc
Q 011414           19 EPTAFDLIVIGTGLPESVISAAASAS----GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEIS   94 (486)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~----G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (486)
                      ++...+|+|||||++||+||++|++.    |++|+|||+++++||++.++....                          
T Consensus        19 ~~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~--------------------------   72 (576)
T PRK13977         19 GVDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPE--------------------------   72 (576)
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCccccc--------------------------
Confidence            44567999999999999999999996    689999999999999998864321                          


Q ss_pred             ccccccccCCCCceEeecCCCEEEecChHHHHHHHhc------C---cccccchhccccee----eeccCCceeecCCCH
Q 011414           95 NYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKS------G---ASHYLEFKSIDATF----MLDADAKLCSVPDSR  161 (486)
Q Consensus        95 ~~~~~~~~~~~~~~~idl~Gp~ll~~~~~l~~~l~~~------~---~~~y~ef~~~~~~~----~~~~~g~~~~vp~s~  161 (486)
                                 .+|.++. ||.+......+.++|.+.      |   .++|..|...++.+    ++..+|....     
T Consensus        73 -----------~Gy~~~~-G~~~~~~y~~l~~ll~~ipsle~~g~sv~dd~~~~~~~~p~~s~~Rl~~~~g~~~d-----  135 (576)
T PRK13977         73 -----------KGYVARG-GREMENHFECLWDLFRSIPSLEDPGASVLDEFYWFNKDDPNYSKARLIHKRGEILD-----  135 (576)
T ss_pred             -----------CCEEEEC-CCCccchHHHHHHHHHhccccCCCCcccccceeeeecCCcccceeeEEcCCCCEEE-----
Confidence                       1233333 344322222444554332      1   23455555554442    1111222222     


Q ss_pred             HHHhhcccCChHhH--HHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChHHHHHHHHHHhhccCCch
Q 011414          162 AAIFKDKSLGLMEK--NQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQE  239 (486)
Q Consensus       162 ~~~f~~~~l~~~~k--~~l~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~l~~~i~~~~~~~~  239 (486)
                           ...+.+..|  ..|++++-   ..             .++..+.++.||++...+....-.+..   .+..+  .
T Consensus       136 -----~~~~~L~~k~r~~Ll~l~l---~~-------------e~~Ld~~tI~d~f~~~Ff~t~Fw~~w~---t~FaF--~  189 (576)
T PRK13977        136 -----TDKFGLSKKDRKELLKLLL---TP-------------EEKLDDKTIEDWFSPEFFETNFWYYWR---TMFAF--E  189 (576)
T ss_pred             -----CcCCCCCHHHHHHHHHHhc---cC-------------HHHhCCcCHHHHHhhcCchhHHHHHHH---HHHCC--c
Confidence                 223333333  33433321   11             124567899999997555432222211   22212  1


Q ss_pred             hhhhhhchhhHHHHHHHHHHhhhcccCCCcceEeecCC-cchHHHHHHHHHHHcCcEEEeCCceeEEEEecCC--CeEEE
Q 011414          240 VSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNS--GSYKG  316 (486)
Q Consensus       240 ~~~~~~s~~~~l~~~~~~~~s~g~~g~~~g~~~~p~gG-~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~--g~~~g  316 (486)
                         +..|+.+....+.+|+.-+.+.+... ++.+.+|- .-.|++.|.+.++..|++|+++++|++|..+.++  +++++
T Consensus       190 ---~whSA~E~rry~~rf~~~~~~l~~~s-~l~ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~Vtg  265 (576)
T PRK13977        190 ---KWHSALEMRRYMHRFIHHIGGLPDLS-GLKFTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATA  265 (576)
T ss_pred             ---hhhHHHHHHHHHHHHHHhhccCCccc-cccCCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEE
Confidence               23578887777777776665544322 24455554 3589999999999999999999999999874113  67888


Q ss_pred             EEeC-CCc--E---EEcCEEEE
Q 011414          317 VRLA-SGQ--D---ILSHKLVL  332 (486)
Q Consensus       317 V~~~-~G~--~---i~A~~VI~  332 (486)
                      |.+. +|+  +   ..+|.||+
T Consensus       266 I~~~~~~~~~~I~l~~~DlViv  287 (576)
T PRK13977        266 IHLTRNGKEETIDLTEDDLVFV  287 (576)
T ss_pred             EEEEeCCceeEEEecCCCEEEE
Confidence            8774 332  2   35777874

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=99.68  E-value=2e-14  Score=140.51  Aligned_cols=246  Identities=18%  Similarity=0.230  Sum_probs=150.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEE--EccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCccccccccccccc
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLH--LDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~Vlv--lE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (486)
                      ..+|+|+|||++||++|++|++.+-+|+|  +|+.+|+||-..|..-+                                
T Consensus        11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~--------------------------------   58 (491)
T KOG1276|consen   11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQ--------------------------------   58 (491)
T ss_pred             cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCC--------------------------------
Confidence            46899999999999999999999887654  99999999999982211                                


Q ss_pred             cccCCCCceEeecCCCEEEecChH----HHHHHHhcCccccc-chhcccc----eeeeccCCceeecCCCHHHHhhcccC
Q 011414          100 LLSQHPRNFNLDVSGPRVLFCADH----AVDLMLKSGASHYL-EFKSIDA----TFMLDADAKLCSVPDSRAAIFKDKSL  170 (486)
Q Consensus       100 ~~~~~~~~~~idl~Gp~ll~~~~~----l~~~l~~~~~~~y~-ef~~~~~----~~~~~~~g~~~~vp~s~~~~f~~~~l  170 (486)
                            +.|-++. ||.-+-..++    ..+++.++|.++-+ .+..-.+    .|++ +.|++..+|.+...... ..+
T Consensus        59 ------ng~ifE~-GPrtlrpag~~g~~~l~lv~dLGl~~e~~~i~~~~paaknr~l~-~~~~L~~vP~sl~~s~~-~~l  129 (491)
T KOG1276|consen   59 ------NGFIFEE-GPRTLRPAGPGGAETLDLVSDLGLEDELQPIDISHPAAKNRFLY-VPGKLPTVPSSLVGSLK-FSL  129 (491)
T ss_pred             ------Cceeecc-CCCccCcCCcchhHHHHHHHHcCccceeeecCCCChhhhheeec-cCcccccCCcccccccc-ccc
Confidence                  2233333 4555433343    67788888886432 2222111    3444 47899999987544111 122


Q ss_pred             ChHhHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHh-cCCChHHHHHHHHHHhhccCCchhhhhhhchhh
Q 011414          171 GLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTK-MKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRD  249 (486)
Q Consensus       171 ~~~~k~~l~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~-~~l~~~l~~~l~~~i~~~~~~~~~~~~~~s~~~  249 (486)
                      .+.-|..+..|+....+..           ......|.++.+|.++ |+  +++-+.+..+++.+.|..|+  .++|.+.
T Consensus       130 ~p~~k~L~~a~l~e~fr~~-----------~~~~~~dESV~sF~~RrfG--~eV~d~~isp~i~GiyAgD~--~~LSmk~  194 (491)
T KOG1276|consen  130 QPFGKPLLEAFLRELFRKK-----------VSDPSADESVESFARRRFG--KEVADRLISPFIRGIYAGDP--SELSMKS  194 (491)
T ss_pred             CcccchhHHHHHhhhcccc-----------CCCCCccccHHHHHHHhhh--HHHHHHHHHHHhCccccCCh--HHhhHHH
Confidence            3344444444443221110           0123457899999985 55  56666655555555566665  4577777


Q ss_pred             HHHHHHHHHHhhhc---------ccC----------------CCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeE
Q 011414          250 GINRLALYNSSIGR---------FQN----------------ALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVIS  304 (486)
Q Consensus       250 ~l~~~~~~~~s~g~---------~g~----------------~~g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~  304 (486)
                      .+..+......+|.         ++.                ..-+.+-.+||+..++++|++.....+..|.++-++..
T Consensus       195 ~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~~k~~e~~~~~~~~~e~~~~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~~  274 (491)
T KOG1276|consen  195 SFGKLWKVEQKHGSIILGTIRAKFARKRTKKAETALSAQAKKEKWTMFSLKGGLETLPKALRKSLGEREVSISLGLKLSG  274 (491)
T ss_pred             HHHHHHHHHHhccchhHHHHHHHHHhhcCCCccchhhhhhcccccchhhhhhhHhHhHHHHHHHhcccchhhhccccccc
Confidence            66655543332220         100                00012346889999999999988888888889999888


Q ss_pred             EEEecCCCeEEEEEeCCCc
Q 011414          305 LLTDQNSGSYKGVRLASGQ  323 (486)
Q Consensus       305 I~~~~~~g~~~gV~~~~G~  323 (486)
                      +.....++...+.+..+++
T Consensus       275 ~sk~~~~~~~~tl~~~~~~  293 (491)
T KOG1276|consen  275 NSKSRSGNWSLTLVDHSGT  293 (491)
T ss_pred             ccccccCCceeEeEcCCCc
Confidence            8654323333444445554

>PLN02976 amine oxidase

Probab=99.67  E-value=3.6e-15  Score=165.56  Aligned_cols=105  Identities=11%  Similarity=0.022  Sum_probs=77.8

Q ss_pred             cceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecC-------CCeEEEEEeCCCcEEEcCEEEEC-CCCCCCC
Q 011414          269 GALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQN-------SGSYKGVRLASGQDILSHKLVLD-PSFTVPG  340 (486)
Q Consensus       269 g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~-------~g~~~gV~~~~G~~i~A~~VI~~-p~~~~~~  340 (486)
                      |..+.+.||++.|+++|++.+     .|+||++|++|.....       ++..+.|.+.+|+++.||+||++ |...+..
T Consensus       926 G~~~rIkGGYqqLIeALAe~L-----~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetftADaVIVTVPLGVLKa 1000 (1713)
T PLN02976        926 GAHCMIKGGYSNVVESLAEGL-----DIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFLGDAVLITVPLGCLKA 1000 (1713)
T ss_pred             CceEEeCCCHHHHHHHHHhhC-----CeecCCeEEEEEecCCcccccccCCCcEEEEECCCCEEEeceEEEeCCHHHhhh
Confidence            345678999999999987643     4999999999987410       12225677889999999999975 4433332


Q ss_pred             CCcccchhhhhhhhhhccCCCcceEEEEEEEecCCCCC
Q 011414          341 SLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP  378 (486)
Q Consensus       341 l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~~~  378 (486)
                      -.+.|.|+||..+....+...++.+.|.++.++++|-+
T Consensus      1001 g~I~FsPPLPe~KqaAIqrLgfG~lnKV~LeFdrpFW~ 1038 (1713)
T PLN02976       1001 ETIKFSPPLPDWKYSSIQRLGFGVLNKVVLEFPEVFWD 1038 (1713)
T ss_pred             cccccCCcccHHHHHHHHhhccccceEEEEEeCCcccc
Confidence            11358899998777755777889999999999998643

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.67  E-value=2.9e-15  Score=155.56  Aligned_cols=111  Identities=16%  Similarity=0.083  Sum_probs=79.1

Q ss_pred             EeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE-CCCCCCCCCCcccchhhh
Q 011414          272 IYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL-DPSFTVPGSLASSHQQLQ  350 (486)
Q Consensus       272 ~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~-~p~~~~~~l~~~~~~~l~  350 (486)
                      ....+|...+.++++.     |..|+++..|.+|.+.. ++. +.|+..++..+.+|+||+ .|-..+..-.+.+.|+||
T Consensus       212 ~~~~~G~~~v~~~la~-----~l~I~~~~~v~~i~~~~-~~~-~~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~Lp  284 (501)
T KOG0029|consen  212 LLMKGGYEPVVNSLAE-----GLDIHLNKRVRKIKYGD-DGA-VKVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPLP  284 (501)
T ss_pred             hHhhCCccHHHhhcCC-----CcceeeceeeEEEEEec-CCc-eEEEEECCCeeEeeEEEEEccHHHhccCceeeCCCCc
Confidence            4568899989887754     99999999999999873 443 345556677799999885 343333331235889999


Q ss_pred             hhhhhhccCCCcceEEEEEEEecCCCCCCCCceEEEeCC
Q 011414          351 ESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPP  389 (486)
Q Consensus       351 ~~~~~l~~~~~~~~v~r~i~i~~~~~~~~~~~~~~~~p~  389 (486)
                      ..+....++...+.+.|.++.+++.+=..........++
T Consensus       285 ~~k~~aI~~lg~g~~~Kv~l~F~~~fW~~~~d~fg~~~~  323 (501)
T KOG0029|consen  285 RWKQEAIDRLGFGLVNKVILEFPRVFWDQDIDFFGIVPE  323 (501)
T ss_pred             HHHHHHHHhcCCCceeEEEEEeccccCCCCcCeEEEccc
Confidence            988887788888889999998888754222234445553

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=99.61  E-value=9.2e-15  Score=150.77  Aligned_cols=157  Identities=16%  Similarity=0.108  Sum_probs=89.4

Q ss_pred             cchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhh
Q 011414          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAF  356 (486)
Q Consensus       278 ~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l  356 (486)
                      .+.+.+.+...+...|++|++|++|++|..+  ++++ .|.+.+|+++.||+||++ |...+.++  .+.++++......
T Consensus       208 ~g~~~~~~~~~~~~~g~~i~l~~~V~~I~~~--~~~v-~v~~~~g~~~~ad~VI~a~p~~~l~~i--~~~p~l~~~~~~a  282 (450)
T PF01593_consen  208 MGGLSLALALAAEELGGEIRLNTPVTRIERE--DGGV-TVTTEDGETIEADAVISAVPPSVLKNI--LLLPPLPEDKRRA  282 (450)
T ss_dssp             TTTTHHHHHHHHHHHGGGEESSEEEEEEEEE--SSEE-EEEETTSSEEEESEEEE-S-HHHHHTS--EEESTSHHHHHHH
T ss_pred             ccchhHHHHHHHhhcCceeecCCcceecccc--cccc-ccccccceEEecceeeecCchhhhhhh--hhccccccccccc
Confidence            4444455556667788999999999999998  5554 677899999999999975 44333331  2455666533333


Q ss_pred             ccCCCcceEEEEEEEecCCCCCCC-CceEEEeCCCCCCCCCCceEEEEEeCCCCccCCCCeEEEEEEE-eec---cCcch
Q 011414          357 SLSDNKGKVARGICITRSSLKPDL-SNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSA-LCD---EVNQG  431 (486)
Q Consensus       357 ~~~~~~~~v~r~i~i~~~~~~~~~-~~~~~~~p~~~~~~~~~~~v~v~~~~~~~~~~P~G~~vi~~~t-~~~---~~~~~  431 (486)
                      .+......+.+..+.++.++.+.. ....++.++..     ....++...+..... +.+..+..... ...   .....
T Consensus       283 ~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~  356 (450)
T PF01593_consen  283 IENLPYSSVSKVFLGFDRPFWPPDIDFFGILYSDGF-----SPIGYVSDPSKFPGR-PGGGVLTSYVGGPDAPEWDDLSD  356 (450)
T ss_dssp             HHTEEEEEEEEEEEEESSGGGGSTTTESEEEEESST-----SSEEEEEEECCTTSC-TTSEEEEEEEEHHHHHHHTTSCH
T ss_pred             ccccccCcceeEEEeeecccccccccccceecccCc-----cccccccccccCccc-ccCCcceeeeeccccchhcccch
Confidence            244455667777777888865443 23333333321     233444555544444 44433333322 211   12334


Q ss_pred             HHHHHHHHHHHHhh
Q 011414          432 KKLLHAALSALQKL  445 (486)
Q Consensus       432 ~~~l~~~~~~l~~~  445 (486)
                      ++.++.+++.|...
T Consensus       357 e~~~~~~~~~L~~~  370 (450)
T PF01593_consen  357 EEILERVLDDLRKI  370 (450)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHhhhc
Confidence            55566666655543

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=99.61  E-value=1.2e-13  Score=131.58  Aligned_cols=292  Identities=16%  Similarity=0.134  Sum_probs=159.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCcccccccccccccc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (486)
                      ...+|.|||+|++||+||..|++. ++|+++|+++++||+++|...+-                                
T Consensus         7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~--------------------------------   53 (447)
T COG2907           7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNT--------------------------------   53 (447)
T ss_pred             CCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccc--------------------------------
Confidence            346899999999999999999875 68999999999999999985321                                


Q ss_pred             ccCCCCceEeecCCCEEEecC---hHHHHHHHhcCcccccchhcccceeeeccCCce-eecCCCHHHHhhc--ccCChHh
Q 011414          101 LSQHPRNFNLDVSGPRVLFCA---DHAVDLMLKSGASHYLEFKSIDATFMLDADAKL-CSVPDSRAAIFKD--KSLGLME  174 (486)
Q Consensus       101 ~~~~~~~~~idl~Gp~ll~~~---~~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~-~~vp~s~~~~f~~--~~l~~~~  174 (486)
                         ....+.+|. | .+++..   -.+..++...|+.....|.+..-  .++ +|.+ +.--.....+|..  ..+.+  
T Consensus        54 ---d~~g~~vDt-G-fiVyn~~tYpnl~~Lf~~iGv~t~as~Msf~v--~~d-~gglEy~g~tgl~~L~aqk~n~l~p--  123 (447)
T COG2907          54 ---DGGGVFVDT-G-FIVYNERTYPNLTRLFKTIGVDTKASFMSFSV--SLD-MGGLEYSGLTGLAGLLAQKRNLLRP--  123 (447)
T ss_pred             ---cCCceeecc-e-eEEecCCCcchHHHHHHHcCCCCcccceeEEE--Eec-CCceeeccCCCccchhhccccccch--
Confidence               001233343 1 233221   26788888888877655544321  111 2222 2111111123321  11112  


Q ss_pred             HHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChHHHHHHHHHH--hhccCCchhhhhhhchhhHHH
Q 011414          175 KNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAI--AMADYDQEVSEYVLKTRDGIN  252 (486)
Q Consensus       175 k~~l~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~l~~~i--~~~~~~~~~~~~~~s~~~~l~  252 (486)
                        ++.+++..+.........   ..+ .....+.++.+||++.+.+...++-.++-+  +..+.+..    .++...+ .
T Consensus       124 --Rf~~mlaeiLrf~r~~~~---~~d-~~~~~~~tl~~~L~~~~f~~af~e~~l~P~~aaiwstp~~----d~~~~pa-~  192 (447)
T COG2907         124 --RFPCMLAEILRFYRSDLA---PSD-NAGQGDTTLAQYLKQRNFGRAFVEDFLQPLVAAIWSTPLA----DASRYPA-C  192 (447)
T ss_pred             --hHHHHHHHHHHHhhhhcc---chh-hhcCCCccHHHHHHhcCccHHHHHHhHHHHHHHHhcCcHh----hhhhhhH-H
Confidence              222223222221110000   011 123456899999999999877666444322  22221111    1111111 1


Q ss_pred             HHHHHHHhhhcccCCCcc-eEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEE
Q 011414          253 RLALYNSSIGRFQNALGA-LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV  331 (486)
Q Consensus       253 ~~~~~~~s~g~~g~~~g~-~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI  331 (486)
                      .+..|..-.|-.--...+ +..+.||+.+-+|   ++++..+++|.++++|.+|..-. +|.  .|...+|++-+.|.||
T Consensus       193 ~~~~f~~nhGll~l~~rp~wrtV~ggS~~yvq---~laa~~~~~i~t~~~V~~l~rlP-dGv--~l~~~~G~s~rFD~vV  266 (447)
T COG2907         193 NFLVFTDNHGLLYLPKRPTWRTVAGGSRAYVQ---RLAADIRGRIETRTPVCRLRRLP-DGV--VLVNADGESRRFDAVV  266 (447)
T ss_pred             HHHHHHhccCceecCCCCceeEcccchHHHHH---HHhccccceeecCCceeeeeeCC-Cce--EEecCCCCccccceee
Confidence            222333333321111122 3447889998888   55678899999999999998753 553  3444679998899977


Q ss_pred             E--CCCCCCCCCCcccchhhhhhhhhhccCCCcceEEEEEEEecCCCCC
Q 011414          332 L--DPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP  378 (486)
Q Consensus       332 ~--~p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~~~  378 (486)
                      +  .|+..+ .|+.  + +-|++.+.+ .. ...+..+++.-++..+.|
T Consensus       267 iAth~dqAl-~mL~--e-~sp~e~qll-~a-~~Ys~n~aVlhtd~~lmP  309 (447)
T COG2907         267 IATHPDQAL-ALLD--E-PSPEERQLL-GA-LRYSANTAVLHTDASLMP  309 (447)
T ss_pred             eecChHHHH-HhcC--C-CCHHHHHHH-Hh-hhhhhceeEEeecccccc
Confidence            3  577653 3321  2 223444433 11 122345667777776665

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=99.41  E-value=1.9e-11  Score=121.81  Aligned_cols=108  Identities=14%  Similarity=0.065  Sum_probs=73.5

Q ss_pred             eEeecCCcchHHHHHHHHHH----HcC--cEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEECCCC-CCCC-CC
Q 011414          271 LIYPIYGQGELPQAFCRRAA----VKG--CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSF-TVPG-SL  342 (486)
Q Consensus       271 ~~~p~gG~~~L~qal~r~~~----~~G--g~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~p~~-~~~~-l~  342 (486)
                      ..+-.-|..++..-|.+...    ++|  ++++++++|..|..+. +++ +.|++.||+.+.||+||++-+. .+.+ ..
T Consensus       215 ~~~~~kGy~~iL~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~~~-~~~-v~l~c~dg~v~~adhVIvTvsLGvLk~~h~  292 (498)
T KOG0685|consen  215 LIWNKKGYKRILKLLMAVIPAQNIELGLWKRIHLNTRVENINWKN-TGE-VKLRCSDGEVFHADHVIVTVSLGVLKEQHH  292 (498)
T ss_pred             heechhHHHHHHHHHhccCCCcchhcCchhhhcccccceeeccCC-CCc-EEEEEeCCcEEeccEEEEEeechhhhhhhh
Confidence            33445566666666654222    233  5667779999998762 455 5789999999999999975331 1111 01


Q ss_pred             cccchhhhhhhhhhccCCCcceEEEEEEEecCCCCCCC
Q 011414          343 ASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDL  380 (486)
Q Consensus       343 ~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~~~~~  380 (486)
                      .-+.|+||..+..-.++...|.+-|..+=+++|+-+..
T Consensus       293 ~lF~P~LP~~K~~AIe~lgfGtv~KiFLE~E~pfwp~~  330 (498)
T KOG0685|consen  293 KLFVPPLPAEKQRAIERLGFGTVNKIFLEFEEPFWPSD  330 (498)
T ss_pred             hhcCCCCCHHHHHHHHhccCCccceEEEEccCCCCCCC
Confidence            13788999988776677778888898888999976654

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=99.39  E-value=3.5e-12  Score=129.33  Aligned_cols=249  Identities=18%  Similarity=0.177  Sum_probs=139.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCccccccccccccccccC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ  103 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (486)
                      .|+|+|||++||+||..|+.+|++|+|+|+++++||+++|+..... .|..                             
T Consensus         2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg-~~~E-----------------------------   51 (485)
T COG3349           2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSDG-NHVE-----------------------------   51 (485)
T ss_pred             eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCCC-Ceee-----------------------------
Confidence            5999999999999999999999999999999999999999875320 1110                             


Q ss_pred             CCCceEeecCCCEEEe-cChHHHHHHHhcCcccccchhcccceeeec--cCCcee--ecCCC------HHHHhhcccCCh
Q 011414          104 HPRNFNLDVSGPRVLF-CADHAVDLMLKSGASHYLEFKSIDATFMLD--ADAKLC--SVPDS------RAAIFKDKSLGL  172 (486)
Q Consensus       104 ~~~~~~idl~Gp~ll~-~~~~l~~~l~~~~~~~y~ef~~~~~~~~~~--~~g~~~--~vp~s------~~~~f~~~~l~~  172 (486)
                        .       |=++++ +--.++.+|.+.+.+..+.+++....++-.  ..|.+-  ..|..      ..+.++.+.+..
T Consensus        52 --~-------glh~f~~~Y~n~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~p~~~~~~~l~~~~~~~  122 (485)
T COG3349          52 --H-------GLHVFFGCYYNLLTLLKELPIEDRLQLREHTKTFVGSGTRPGAIGRFARPDAPQPTNGLKAFLRLPQLPR  122 (485)
T ss_pred             --e-------eeEEechhHHHHHHHhhhCCchheeehHhhhhhhcccCCCCCcccccccCCCCCcchhhhhhhhccccCH
Confidence              0       223332 233677888888777666666544433211  112211  11111      012223333333


Q ss_pred             HhHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChHHH-HHH---HHHHhhccCCchhhhhhhchh
Q 011414          173 MEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIK-SIV---LYAIAMADYDQEVSEYVLKTR  248 (486)
Q Consensus       173 ~~k~~l~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~-~~l---~~~i~~~~~~~~~~~~~~s~~  248 (486)
                      .+|..   |+-.+.....      .......+..+.++.|||++++..+... +.+   .+++.+  ...+.    .|+.
T Consensus       123 ~~~~~---~~~~l~~~~~------g~~~~~~eld~~s~~d~l~~~g~~~~~~k~~~~~~~~~l~f--~~~e~----~sa~  187 (485)
T COG3349         123 REKIR---FVLRLGDAPI------GADRSLRELDKISFADWLKEKGAREGAYKAAFAPIALALTF--IDPEG----CSAR  187 (485)
T ss_pred             HHHhH---Hhhccccccc------hhHHHHHHHhcccHHHHHHHhCCCchhHHHHHHHHHHhhcc--cCccc----Ccch
Confidence            33322   2211111000      0011234667899999999877664432 222   222222  12222    3444


Q ss_pred             hHHHHHHHHHHhhhcccCCCcceEeecCCcc-hHHHHHHHHHHHcCcEEEeCCceeEEEEec--CCCeEEEEEeCCCcEE
Q 011414          249 DGINRLALYNSSIGRFQNALGALIYPIYGQG-ELPQAFCRRAAVKGCLYVLRMPVISLLTDQ--NSGSYKGVRLASGQDI  325 (486)
Q Consensus       249 ~~l~~~~~~~~s~g~~g~~~g~~~~p~gG~~-~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~--~~g~~~gV~~~~G~~i  325 (486)
                      ..+..+..++  +...+.  +.....+++.. .+.+.+.+...+.|.+++++.+|+.|..+.  .+.+++|+.+. +...
T Consensus       188 ~~lt~~~~~~--~~~~~~--~i~~~~~g~~~E~~~~p~~~yi~~~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~-~~~~  262 (485)
T COG3349         188 FFLTILNLFL--IVTLEA--SILRNLRGSPDEVLLQPWTEYIPERGRKVHADYPVKELDLDGARGLAKVTGGDVT-GPEQ  262 (485)
T ss_pred             hHHHHHHHHH--HhccCc--chhhhhcCCCcceeeehhhhhccccCceeeccceeeeeeccccccccceEeeeec-Ccce
Confidence            4443333332  222221  11335677765 456877888889999999999999998753  13446777765 6554


Q ss_pred             EcCEEE
Q 011414          326 LSHKLV  331 (486)
Q Consensus       326 ~A~~VI  331 (486)
                      .+..++
T Consensus       263 e~~~~~  268 (485)
T COG3349         263 EQQAAL  268 (485)
T ss_pred             Eeeehh
Confidence            444444

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.34  E-value=1.3e-11  Score=121.12  Aligned_cols=59  Identities=20%  Similarity=0.227  Sum_probs=51.6

Q ss_pred             eEeec-CCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE
Q 011414          271 LIYPI-YGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (486)
Q Consensus       271 ~~~p~-gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~  332 (486)
                      -++|. .....|.+++.+.+++.|++++++++|.+|..+  + ....|.+.+|++++||.+|+
T Consensus       102 r~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~--~-~~f~l~t~~g~~i~~d~lil  161 (408)
T COG2081         102 RMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKD--D-SGFRLDTSSGETVKCDSLIL  161 (408)
T ss_pred             eecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEec--C-ceEEEEcCCCCEEEccEEEE
Confidence            36888 678999999999999999999999999999886  3 34678888998999999884

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=99.27  E-value=5.8e-11  Score=119.58  Aligned_cols=42  Identities=26%  Similarity=0.444  Sum_probs=39.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcccc
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~   64 (486)
                      +||+|||||++||++|..|++.|++|+|+|+++.+||.+.+.
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~   43 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDE   43 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeee
Confidence            799999999999999999999999999999999999987764

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=99.26  E-value=1.1e-11  Score=93.32  Aligned_cols=41  Identities=22%  Similarity=0.323  Sum_probs=38.2

Q ss_pred             EECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchh
Q 011414           27 VIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIA   67 (486)
Q Consensus        27 IIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~   67 (486)
                      |||+|++||++|.+|+++|++|+|+|+++++||+++++..+
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~   41 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIP   41 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEET
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEEC
Confidence            89999999999999999999999999999999999998754

...

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=99.24  E-value=7.1e-11  Score=118.85  Aligned_cols=60  Identities=30%  Similarity=0.409  Sum_probs=52.4

Q ss_pred             eEeecCC---cchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC
Q 011414          271 LIYPIYG---QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (486)
Q Consensus       271 ~~~p~gG---~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~  333 (486)
                      +.++.+|   ...+.++|.+.+...|++|+.+++|++|..+  ++++.+|++.+|+ ++||+||..
T Consensus       136 ~~~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~--~~~v~gv~~~~g~-i~ad~vV~a  198 (358)
T PF01266_consen  136 VFFPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVD--GGRVTGVRTSDGE-IRADRVVLA  198 (358)
T ss_dssp             EEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEE--TTEEEEEEETTEE-EEECEEEE-
T ss_pred             hcccccccccccchhhhhHHHHHHhhhhccccccccchhhc--ccccccccccccc-cccceeEec
Confidence            5678888   6899999999999999999999999999988  7788889998887 999999853

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.11  E-value=2.9e-10  Score=116.05  Aligned_cols=60  Identities=15%  Similarity=0.213  Sum_probs=48.3

Q ss_pred             eEeecCC-cchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE
Q 011414          271 LIYPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (486)
Q Consensus       271 ~~~p~gG-~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~  332 (486)
                      -.||.-. ..++.++|.+.+...|++++++++|++|..+  ++.++.|++++++++.||+||+
T Consensus       100 r~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~--~~~~f~v~~~~~~~~~a~~vIL  160 (409)
T PF03486_consen  100 RVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKK--EDGVFGVKTKNGGEYEADAVIL  160 (409)
T ss_dssp             EEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEE--TTEEEEEEETTTEEEEESEEEE
T ss_pred             EECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeec--CCceeEeeccCcccccCCEEEE
Confidence            4688774 6799999999999999999999999999987  6677889887888999999984

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=99.08  E-value=1.6e-09  Score=109.80  Aligned_cols=61  Identities=21%  Similarity=0.326  Sum_probs=50.4

Q ss_pred             eEeecCCc---chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcE-EEcCEEEEC
Q 011414          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQD-ILSHKLVLD  333 (486)
Q Consensus       271 ~~~p~gG~---~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~-i~A~~VI~~  333 (486)
                      .+.|.+|.   +++..+|.+.+...|+.++||++|+.|+... +| ++.+.+.+|++ ++|+.||..
T Consensus       142 l~~p~~giV~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~-dg-~~~~~~~~g~~~~~ak~Vin~  206 (429)
T COG0579         142 LLVPSGGIVDPGELTRALAEEAQANGVELRLNTEVTGIEKQS-DG-VFVLNTSNGEETLEAKFVINA  206 (429)
T ss_pred             EEcCCCceEcHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeC-Cc-eEEEEecCCcEEEEeeEEEEC
Confidence            55677774   6899999999999999999999999999872 43 55677788887 999999953

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=99.06  E-value=3.2e-09  Score=108.93  Aligned_cols=59  Identities=19%  Similarity=0.209  Sum_probs=47.3

Q ss_pred             eEeecCCc---chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC
Q 011414          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (486)
Q Consensus       271 ~~~p~gG~---~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~  333 (486)
                      +++|.+|.   ..+.++|.+.++..|++++++++|.+|..+  ++. +.|++.+| +++||+||+.
T Consensus       138 l~~p~~g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~--~~~-~~V~~~~g-~i~ad~vV~A  199 (393)
T PRK11728        138 IFVPSTGIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEH--ANG-VVVRTTQG-EYEARTLINC  199 (393)
T ss_pred             EEcCCceEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEec--CCe-EEEEECCC-EEEeCEEEEC
Confidence            55677774   688999999999999999999999999765  444 46777666 7999998853

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=99.06  E-value=1.1e-09  Score=104.06  Aligned_cols=100  Identities=20%  Similarity=0.380  Sum_probs=70.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCccccccccccccccc
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL  101 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (486)
                      .+|.+|||+|++|++.|..|++.|++|+|+||++++||.|-+...+.                                 
T Consensus         1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~---------------------------------   47 (374)
T COG0562           1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQ---------------------------------   47 (374)
T ss_pred             CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCC---------------------------------
Confidence            48999999999999999999999999999999999999998864321                                 


Q ss_pred             cCCCCceEeecCCCEEEecChHH-HHHHHhcCcccccchhcccceeeeccCCceeecCCCHHH
Q 011414          102 SQHPRNFNLDVSGPRVLFCADHA-VDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAA  163 (486)
Q Consensus       102 ~~~~~~~~idl~Gp~ll~~~~~l-~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s~~~  163 (486)
                          .+..+.--||+++...+.- .+.+     .++.||.......+-..+|..+.+|.+...
T Consensus        48 ----tGIlvHkYGpHIFHT~~~~Vwdyv-----~~F~e~~~Y~hrVla~~ng~~~~lP~nl~t  101 (374)
T COG0562          48 ----TGILVHKYGPHIFHTDNKRVWDYV-----NQFTEFNPYQHRVLALVNGQLYPLPFNLNT  101 (374)
T ss_pred             ----CCeEEeeccCceeecCchHHHHHH-----hhhhhhhhhccceeEEECCeeeeccccHHH
Confidence                0111222289999877632 2222     234555554433322238899999987643

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=99.02  E-value=1.7e-08  Score=105.73  Aligned_cols=58  Identities=24%  Similarity=0.275  Sum_probs=45.8

Q ss_pred             eEeecCCc---chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC
Q 011414          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (486)
Q Consensus       271 ~~~p~gG~---~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~  333 (486)
                      ++.|..|.   ..+.++|.+.+...|++|+.+++|++|..   ++ .+.|++.+| +++|++||+.
T Consensus       172 ~~~~~~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~---~~-~~~v~t~~g-~v~A~~VV~A  232 (460)
T TIGR03329       172 FYSPVAASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE---GQ-PAVVRTPDG-QVTADKVVLA  232 (460)
T ss_pred             EEeCCCeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee---CC-ceEEEeCCc-EEECCEEEEc
Confidence            55677774   57899999999999999999999999863   22 256777666 6999998853

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=98.96  E-value=2.8e-08  Score=101.44  Aligned_cols=58  Identities=21%  Similarity=0.179  Sum_probs=45.2

Q ss_pred             eEeecCCc---chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE
Q 011414          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (486)
Q Consensus       271 ~~~p~gG~---~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~  332 (486)
                      ++.|.+|.   ..+.++|.+.++..|++++.+++|++|..+  ++. +.|++++| +++|++||+
T Consensus       134 ~~~~~~g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~--~~~-~~v~~~~~-~i~a~~vV~  194 (380)
T TIGR01377       134 LLDPNGGVLYAEKALRALQELAEAHGATVRDGTKVVEIEPT--ELL-VTVKTTKG-SYQANKLVV  194 (380)
T ss_pred             EEcCCCcEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEec--CCe-EEEEeCCC-EEEeCEEEE
Confidence            44566664   578899999899999999999999999765  444 45776555 799998774

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=98.91  E-value=3.4e-08  Score=103.69  Aligned_cols=57  Identities=30%  Similarity=0.370  Sum_probs=46.4

Q ss_pred             ecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeC--CC--cEEEcCEEEE
Q 011414          274 PIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA--SG--QDILSHKLVL  332 (486)
Q Consensus       274 p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~--~G--~~i~A~~VI~  332 (486)
                      +.+|...+.+.|.+.++..|++++++++|++|..+  ++++++|+..  +|  ..++|+.||+
T Consensus       126 ~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~--~g~v~gv~~~~~~g~~~~i~a~~VIl  186 (466)
T PRK08274        126 FWGGGKALVNALYRSAERLGVEIRYDAPVTALELD--DGRFVGARAGSAAGGAERIRAKAVVL  186 (466)
T ss_pred             ecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEec--CCeEEEEEEEccCCceEEEECCEEEE
Confidence            45555688999999999999999999999999876  6788888763  33  3589999885

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=98.91  E-value=2.7e-08  Score=106.21  Aligned_cols=60  Identities=27%  Similarity=0.287  Sum_probs=47.4

Q ss_pred             ceEeecCCc---chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeC---CC--cEEEcCEEEE
Q 011414          270 ALIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SG--QDILSHKLVL  332 (486)
Q Consensus       270 ~~~~p~gG~---~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~---~G--~~i~A~~VI~  332 (486)
                      ++.+|. |.   ..+..++++.+..+|++++.+++|++|..+  ++++++|++.   +|  .+|+|++||.
T Consensus       138 a~~~~d-g~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~--~~~v~gv~v~d~~~g~~~~i~A~~VVn  205 (546)
T PRK11101        138 AVKVPD-GTVDPFRLTAANMLDAKEHGAQILTYHEVTGLIRE--GDTVCGVRVRDHLTGETQEIHAPVVVN  205 (546)
T ss_pred             EEEecC-cEECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEc--CCeEEEEEEEEcCCCcEEEEECCEEEE
Confidence            366774 53   478888889899999999999999999876  6777788752   33  3689999884

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=98.86  E-value=2.8e-08  Score=101.20  Aligned_cols=58  Identities=28%  Similarity=0.268  Sum_probs=45.2

Q ss_pred             eEeecCCc---chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE
Q 011414          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (486)
Q Consensus       271 ~~~p~gG~---~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~  332 (486)
                      ++.|.+|.   ..+.+++.+.+...|++++++++|++|..+  ++. +.|++.+| +++||+||.
T Consensus       138 ~~~~~~g~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~--~~~-~~v~~~~g-~~~a~~vV~  198 (376)
T PRK11259        138 LFEPDGGFLRPELAIKAHLRLAREAGAELLFNEPVTAIEAD--GDG-VTVTTADG-TYEAKKLVV  198 (376)
T ss_pred             EEcCCCCEEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEee--CCe-EEEEeCCC-EEEeeEEEE
Confidence            44566664   467788888888899999999999999876  443 46777666 799999884

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=98.86  E-value=9.8e-08  Score=98.68  Aligned_cols=60  Identities=25%  Similarity=0.329  Sum_probs=47.9

Q ss_pred             ceEeecCCc---chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE
Q 011414          270 ALIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (486)
Q Consensus       270 ~~~~p~gG~---~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~  332 (486)
                      ++.+|..|.   ..+.++|.+.+...|++|+++++|++|..+  ++++++|++. +.+++||+||+
T Consensus       189 a~~~p~~g~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~--~~~~~~v~t~-~~~~~a~~VV~  251 (416)
T PRK00711        189 GLRLPNDETGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVE--GGRITGVQTG-GGVITADAYVV  251 (416)
T ss_pred             EEECCCcccCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEec--CCEEEEEEeC-CcEEeCCEEEE
Confidence            355677664   478899999999999999999999999876  5666677765 45799999885

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.84  E-value=2.8e-07  Score=98.55  Aligned_cols=44  Identities=30%  Similarity=0.494  Sum_probs=40.4

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        18 ~~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (486)
                      ....++||||||+| +|++||...+++|.+|+||||.+.+||.+.
T Consensus        12 ~~d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~   55 (564)
T PRK12845         12 VRDTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTA   55 (564)
T ss_pred             CCCceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCccc
Confidence            34568999999999 899999999999999999999999999766

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=98.84  E-value=1e-07  Score=98.48  Aligned_cols=40  Identities=23%  Similarity=0.297  Sum_probs=36.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (486)
                      +||||||||+.|+++|..|+++|++|+||||++.+|+-++
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~~~~as   41 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYAAMETS   41 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCcCcc
Confidence            6999999999999999999999999999999997765443

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=98.78  E-value=3.5e-07  Score=96.84  Aligned_cols=42  Identities=19%  Similarity=0.388  Sum_probs=39.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (486)
                      .++||||||+|.+|++||+.++++|.+|+||||.+..||...
T Consensus        60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~  101 (506)
T PRK06481         60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTM  101 (506)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCccc
Confidence            578999999999999999999999999999999999998643

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=98.77  E-value=9e-08  Score=104.79  Aligned_cols=58  Identities=22%  Similarity=0.241  Sum_probs=47.5

Q ss_pred             eEeecCCc---chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE
Q 011414          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (486)
Q Consensus       271 ~~~p~gG~---~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~  332 (486)
                      +++|.+|.   ..+.++|.+.+.. |++++.+++|++|..+  ++.+ .|++.+|..++|++||.
T Consensus       397 ~~~p~~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~--~~~~-~v~t~~g~~~~ad~VV~  457 (662)
T PRK01747        397 IFYPQGGWLCPAELCRALLALAGQ-QLTIHFGHEVARLERE--DDGW-QLDFAGGTLASAPVVVL  457 (662)
T ss_pred             EEeCCCCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEe--CCEE-EEEECCCcEEECCEEEE
Confidence            66788875   5888999998888 9999999999999876  5554 47777787788999884

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=98.76  E-value=5.4e-09  Score=94.97  Aligned_cols=43  Identities=14%  Similarity=0.214  Sum_probs=36.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s   63 (486)
                      .++||+|||+|.+||+||++|+++|+||+++|++..+||..+.
T Consensus        16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~   58 (230)
T PF01946_consen   16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWG   58 (230)
T ss_dssp             TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS
T ss_pred             ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccc
Confidence            4689999999999999999999999999999999999987653

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=98.75  E-value=5.7e-09  Score=94.22  Aligned_cols=42  Identities=17%  Similarity=0.245  Sum_probs=39.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (486)
                      .+-||||||+|.+||+||++||++|.||+++|++.++||-.+
T Consensus        29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w   70 (262)
T COG1635          29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIW   70 (262)
T ss_pred             hhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccc
Confidence            457999999999999999999999999999999999998654

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=98.74  E-value=3.9e-07  Score=93.99  Aligned_cols=61  Identities=20%  Similarity=0.258  Sum_probs=46.4

Q ss_pred             eEeecCCc---chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC
Q 011414          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (486)
Q Consensus       271 ~~~p~gG~---~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~  333 (486)
                      ++.+.+|.   ..+.++|++.+...|++++.+++|++|.... ++++++|++.+| ++.|++||+.
T Consensus       172 ~~~~~~g~v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~-~~~~~~v~t~~g-~i~a~~vVva  235 (407)
T TIGR01373       172 LLQRRGGTARHDAVAWGYARGADRRGVDIIQNCEVTGFIRRD-GGRVIGVETTRG-FIGAKKVGVA  235 (407)
T ss_pred             EEcCCCCcCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcC-CCcEEEEEeCCc-eEECCEEEEC
Confidence            44455554   3677888899999999999999999997541 466677887777 6999987753

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=98.73  E-value=4.1e-07  Score=87.29  Aligned_cols=65  Identities=14%  Similarity=0.124  Sum_probs=50.4

Q ss_pred             eecCCc---chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC-CCCC
Q 011414          273 YPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFT  337 (486)
Q Consensus       273 ~p~gG~---~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~-p~~~  337 (486)
                      -+.||.   ..-..+|...++.+|+.++-+..|..+....+++..++|++++|..+.|+++|++ ..++
T Consensus       144 n~~gGvi~a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi  212 (399)
T KOG2820|consen  144 NESGGVINAAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWI  212 (399)
T ss_pred             cccccEeeHHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHH
Confidence            345664   2345777888899999999999999998654567778999999999999998853 4443

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=98.72  E-value=2.6e-07  Score=96.81  Aligned_cols=60  Identities=20%  Similarity=0.262  Sum_probs=47.0

Q ss_pred             eEeecCC-c---chHHHHHHHHHHH----cC--cEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC
Q 011414          271 LIYPIYG-Q---GELPQAFCRRAAV----KG--CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (486)
Q Consensus       271 ~~~p~gG-~---~~L~qal~r~~~~----~G--g~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~  333 (486)
                      .+.|..| .   +.+.++|.+.++.    .|  ++++++++|+.|..+  ++..+.|++.+| +++|+.||+.
T Consensus       199 l~~p~~g~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~--~~~~~~V~T~~G-~i~A~~VVva  268 (497)
T PTZ00383        199 LYVPNELTTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERS--NDSLYKIHTNRG-EIRARFVVVS  268 (497)
T ss_pred             EEeCCCCEEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEec--CCCeEEEEECCC-EEEeCEEEEC
Confidence            5567553 3   6899999999988    78  678999999999875  455677887666 6999998853

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.69  E-value=1.8e-07  Score=96.95  Aligned_cols=48  Identities=25%  Similarity=0.353  Sum_probs=42.8

Q ss_pred             CCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcccc
Q 011414           17 PIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (486)
Q Consensus        17 ~~~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~   64 (486)
                      .+.+.++||+|||||++|+-+|+.+|.+|++|+++|++|.-.|-.+..
T Consensus         7 ~~~~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrs   54 (532)
T COG0578           7 RLRMEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRS   54 (532)
T ss_pred             cccccCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCcc
Confidence            445688999999999999999999999999999999999988866543

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=98.63  E-value=6.1e-08  Score=90.27  Aligned_cols=46  Identities=13%  Similarity=0.281  Sum_probs=43.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhh
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIAD   68 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~   68 (486)
                      .+++|||+|++||+||..|+.+|++|+|+||..-+|||.+|-..++
T Consensus         2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~   47 (331)
T COG3380           2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDG   47 (331)
T ss_pred             CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCC
Confidence            3699999999999999999999999999999999999999987664

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=98.59  E-value=4.6e-08  Score=100.44  Aligned_cols=43  Identities=21%  Similarity=0.367  Sum_probs=40.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s   63 (486)
                      .+|||||||||++|++||+.|+++|++|+|+|+++.+|....+
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~   44 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCC   44 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccc
Confidence            5699999999999999999999999999999999999997766

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=98.59  E-value=2.6e-06  Score=86.88  Aligned_cols=250  Identities=11%  Similarity=0.145  Sum_probs=124.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhC----CCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCcccccccccccc
Q 011414           23 FDLIVIGTGLPESVISAAASAS----GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS   98 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~----G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (486)
                      .++-|||+|+++|+||++|-|.    |.+|.+||+.+..||......... .+|+..+|-...    ..|   +..+.  
T Consensus         3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g~~~-~GYv~RgGR~~~----~~~---eclwd--   72 (500)
T PF06100_consen    3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAGDPE-NGYVIRGGRMME----FHY---ECLWD--   72 (500)
T ss_pred             ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCCCCC-CCeeecCCcccc----chh---HHHHH--
Confidence            5788999999999999999776    679999999999999987654322 234443331110    000   00000  


Q ss_pred             ccccCCCCceEeecCCCEEEecChHHHHHHHhcCcccccchhcccceeeeccCCceeecCCCHHHHhhcccCChHhHHHH
Q 011414           99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (486)
Q Consensus        99 ~~~~~~~~~~~idl~Gp~ll~~~~~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s~~~~f~~~~l~~~~k~~l  178 (486)
                        +        +... |++--..-...+.+...+-.+ .   ......+...+|+.....       ..-.|+.+++..|
T Consensus        73 --L--------ls~I-PSle~p~~SVlDe~~~~n~~~-p---~~s~~Rli~~~G~~~~~~-------~~~~Ls~k~r~eL  130 (500)
T PF06100_consen   73 --L--------LSSI-PSLEDPGKSVLDEIYWFNKED-P---NYSKARLIDKRGQIVDTD-------SKFGLSEKDRMEL  130 (500)
T ss_pred             --H--------HHhC-CCCCCCCCcHHHHHHHhccCC-C---CCcceeeeccCCcccccc-------CcCCCCHHHHHHH
Confidence              0        0001 221100001122221111110 0   000001111123221111       1123556666667


Q ss_pred             HHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChHHHHHHH-HH--HhhccCCchhhhhhhchhhHHHHHH
Q 011414          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVL-YA--IAMADYDQEVSEYVLKTRDGINRLA  255 (486)
Q Consensus       179 ~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~l~-~~--i~~~~~~~~~~~~~~s~~~~l~~~~  255 (486)
                      ++++-.-.                ....+..+.||+..-.+.-   +|.. ++  .++.++        -|+.+.-..+.
T Consensus       131 ~kL~l~~E----------------~~L~~~~I~d~F~~~FF~S---nFW~~W~T~FAFqpW--------hSa~E~rRyl~  183 (500)
T PF06100_consen  131 IKLLLTPE----------------EDLGDKRIEDWFSESFFES---NFWYMWSTMFAFQPW--------HSAVEFRRYLH  183 (500)
T ss_pred             HHHhcCCH----------------HHhCcccHHHhcchhhhcC---chhHhHHHhhccCcc--------hhHHHHHHHHH
Confidence            77553111                1233455666655311111   2222 11  222222        25555555566


Q ss_pred             HHHHhhhcccCCCcceEeecCC-cchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCC--eEEEEEe-CCCcE--E---E
Q 011414          256 LYNSSIGRFQNALGALIYPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSG--SYKGVRL-ASGQD--I---L  326 (486)
Q Consensus       256 ~~~~s~g~~g~~~g~~~~p~gG-~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g--~~~gV~~-~~G~~--i---~  326 (486)
                      +|+.-+.++..- .++.+.+|- .-.|+.-|.+-++..|+++++|+.|+.|..+.+++  .+..+.+ .+|+.  |   .
T Consensus       184 Rf~h~~~~l~~l-~~l~~T~YNQyeSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~  262 (500)
T PF06100_consen  184 RFIHEIPGLNDL-SGLDRTKYNQYESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGP  262 (500)
T ss_pred             HHHHhcCCCCCc-cccccCccccHHHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCC
Confidence            666555443321 225566665 45899999999999999999999999998863222  2334443 45542  3   2


Q ss_pred             cCEEEE
Q 011414          327 SHKLVL  332 (486)
Q Consensus       327 A~~VI~  332 (486)
                      -|.|++
T Consensus       263 ~DlV~v  268 (500)
T PF06100_consen  263 DDLVFV  268 (500)
T ss_pred             CCEEEE
Confidence            566764

>TIGR00292 thiazole biosynthesis enzyme

Probab=98.54  E-value=8e-08  Score=92.09  Aligned_cols=41  Identities=20%  Similarity=0.280  Sum_probs=38.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (486)
                      .++||+|||+|.+||+||++|+++|++|+++||+..+||..
T Consensus        20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~   60 (254)
T TIGR00292        20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGS   60 (254)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccc
Confidence            46899999999999999999999999999999999998763

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=98.52  E-value=9.7e-08  Score=99.00  Aligned_cols=40  Identities=30%  Similarity=0.507  Sum_probs=37.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (486)
                      .+|||||||||++|++||+.|+++|++|+|+||++.+|..
T Consensus         4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k   43 (428)
T PRK10157          4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAK   43 (428)
T ss_pred             ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCc
Confidence            4699999999999999999999999999999999988764

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=98.52  E-value=9.8e-08  Score=91.76  Aligned_cols=41  Identities=15%  Similarity=0.268  Sum_probs=38.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (486)
                      .++||+|||+|++||+||.+|+++|++|+++|++..+||..
T Consensus        24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~   64 (257)
T PRK04176         24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGM   64 (257)
T ss_pred             ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCcc
Confidence            46899999999999999999999999999999999998854

>PRK10015 oxidoreductase; Provisional

Probab=98.49  E-value=1.2e-07  Score=98.16  Aligned_cols=41  Identities=29%  Similarity=0.470  Sum_probs=37.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (486)
                      +.+|||||||||++|++||+.|+++|++|+++||++.+|-.
T Consensus         3 ~~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k   43 (429)
T PRK10015          3 DDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCK   43 (429)
T ss_pred             ccccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcc
Confidence            35699999999999999999999999999999999887643

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.44  E-value=1.9e-07  Score=98.01  Aligned_cols=46  Identities=24%  Similarity=0.306  Sum_probs=42.1

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcccc
Q 011414           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (486)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~   64 (486)
                      .|..|||+|||||.+|+.||..|++.|++|+++|+++.+||.|...
T Consensus         2 ~~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~   47 (461)
T PRK05249          2 HMYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHT   47 (461)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCEEEEEecccccccccccc
Confidence            4567999999999999999999999999999999999999987543

>PRK07121 hypothetical protein; Validated

Probab=98.41  E-value=3.4e-07  Score=96.83  Aligned_cols=42  Identities=26%  Similarity=0.363  Sum_probs=39.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (486)
                      .++||||||+|.+||+||+.++++|.+|+||||+...||...
T Consensus        19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~s~   60 (492)
T PRK07121         19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGATA   60 (492)
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCccc
Confidence            468999999999999999999999999999999999998653

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.40  E-value=2.4e-07  Score=97.19  Aligned_cols=44  Identities=18%  Similarity=0.270  Sum_probs=40.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s   63 (486)
                      |++|||||||+|.+|+.||.++++.|++|+++|+++.+||.|..
T Consensus         1 m~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~   44 (466)
T PRK06115          1 MASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLN   44 (466)
T ss_pred             CCcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeecc
Confidence            35699999999999999999999999999999998899998744

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.40  E-value=3.3e-07  Score=94.73  Aligned_cols=45  Identities=22%  Similarity=0.485  Sum_probs=39.8

Q ss_pred             CCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414           13 PPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (486)
Q Consensus        13 ~~~~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (486)
                      |..|.-++..+||+|||||++||++|..|+++|++|+|+|+++..
T Consensus         9 ~~~~~~~~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   53 (415)
T PRK07364          9 PTLPSTRSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE   53 (415)
T ss_pred             CCCCCCCccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence            445665667899999999999999999999999999999998764

>TIGR00275 flavoprotein, HI0933 family

Probab=98.38  E-value=3.5e-06  Score=86.59  Aligned_cols=57  Identities=21%  Similarity=0.285  Sum_probs=45.6

Q ss_pred             EeecCC-cchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE
Q 011414          272 IYPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (486)
Q Consensus       272 ~~p~gG-~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~  332 (486)
                      .||... ..++.++|.+.++..|.++++++.|++|..+  ++ .+.|++ +++++.||.||+
T Consensus        97 ~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~--~~-~~~v~~-~~~~i~ad~VIl  154 (400)
T TIGR00275        97 VFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKD--DN-GFGVET-SGGEYEADKVIL  154 (400)
T ss_pred             eECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEec--CC-eEEEEE-CCcEEEcCEEEE
Confidence            466544 5789999999999999999999999999664  33 356776 677899999985

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.38  E-value=3.1e-07  Score=95.77  Aligned_cols=44  Identities=16%  Similarity=0.375  Sum_probs=39.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC-CCCCCccc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP-FYGSHFSS   63 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~-~~GG~~~s   63 (486)
                      |++|||||||||.+|+.||.+|++.|++|+++|+.+ .+||.|..
T Consensus         1 ~~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~   45 (441)
T PRK08010          1 MNKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCIN   45 (441)
T ss_pred             CCcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEee
Confidence            357999999999999999999999999999999987 48998754

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=98.37  E-value=4e-07  Score=94.73  Aligned_cols=42  Identities=12%  Similarity=0.218  Sum_probs=38.0

Q ss_pred             CCCCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           14 PYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        14 ~~~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      .-+++....|||||||||++|++||..|+++|++|+++|++.
T Consensus        31 ~~~~~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~   72 (450)
T PLN00093         31 ASKKLSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL   72 (450)
T ss_pred             CCCCcCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            455667778999999999999999999999999999999975

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=98.36  E-value=4.5e-07  Score=96.06  Aligned_cols=44  Identities=30%  Similarity=0.412  Sum_probs=39.3

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (486)
                      ++.+|||||||||+.|+.+|..|+++|++|+++|+++..+|...
T Consensus         3 ~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~GtS~   46 (508)
T PRK12266          3 MMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATSS   46 (508)
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccc
Confidence            34679999999999999999999999999999999988776553

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=98.35  E-value=3.3e-07  Score=92.01  Aligned_cols=36  Identities=19%  Similarity=0.350  Sum_probs=31.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (486)
                      ++||||||||++||++|..|+|+|++|+|+|+++..
T Consensus         1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~   36 (356)
T PF01494_consen    1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDP   36 (356)
T ss_dssp             EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred             CceEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence            489999999999999999999999999999998654

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=98.35  E-value=4.6e-07  Score=94.50  Aligned_cols=44  Identities=18%  Similarity=0.264  Sum_probs=40.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s   63 (486)
                      +...+|+|||||.+||+||.+|++.|.+|+|+|+++.+||.|.-
T Consensus         8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~   51 (461)
T PLN02172          8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVY   51 (461)
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeec
Confidence            34579999999999999999999999999999999999999865

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=98.35  E-value=3.6e-07  Score=94.75  Aligned_cols=41  Identities=29%  Similarity=0.453  Sum_probs=34.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcccc
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~   64 (486)
                      ||||||||.+|++||+.+||+|.+|+++|+++.+||...+-
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~   41 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSG   41 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGS
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceEC
Confidence            89999999999999999999999999999999999987643

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=98.34  E-value=5.1e-06  Score=86.37  Aligned_cols=61  Identities=20%  Similarity=0.180  Sum_probs=48.6

Q ss_pred             EeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCC-CcEEEcCEEEE
Q 011414          272 IYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS-GQDILSHKLVL  332 (486)
Q Consensus       272 ~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~-G~~i~A~~VI~  332 (486)
                      .++.++...+.++|.+.++.+|++|+++++|++|..+.+++++++|...+ +.+++|+.||+
T Consensus       116 ~~~~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIl  177 (432)
T TIGR02485       116 AFLRGGGKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVL  177 (432)
T ss_pred             eeecCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEE
Confidence            35666677899999999999999999999999998752146778887543 45799999885

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=98.34  E-value=4.8e-07  Score=93.91  Aligned_cols=50  Identities=16%  Similarity=0.193  Sum_probs=45.3

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCc-EEEEccCCCCCCCccccchhh
Q 011414           19 EPTAFDLIVIGTGLPESVISAAASASGKS-VLHLDPNPFYGSHFSSLSIAD   68 (486)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~-VlvlE~~~~~GG~~~s~~~~~   68 (486)
                      .++.+||+|||||.+|+++|++|.++|.. +++|||++.+||.|+....++
T Consensus         5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~   55 (443)
T COG2072           5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPG   55 (443)
T ss_pred             cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCc
Confidence            45789999999999999999999999999 999999999999988865544

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.34  E-value=4.3e-07  Score=94.58  Aligned_cols=43  Identities=30%  Similarity=0.487  Sum_probs=39.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC-CCCCcc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF-YGSHFS   62 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~-~GG~~~   62 (486)
                      |.+|||||||||.+|+.||..|++.|++|+++|+++. +||.|.
T Consensus         1 ~~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~   44 (438)
T PRK07251          1 MLTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCI   44 (438)
T ss_pred             CCccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeee
Confidence            3479999999999999999999999999999999875 799764

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.33  E-value=5.4e-07  Score=92.27  Aligned_cols=40  Identities=33%  Similarity=0.471  Sum_probs=36.7

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (486)
Q Consensus        18 ~~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (486)
                      ++|..+||||||||++||++|..|+++|++|+|+|+++..
T Consensus         3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~   42 (388)
T PRK07494          3 MEKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPY   42 (388)
T ss_pred             CCCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence            4567799999999999999999999999999999998765

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.30  E-value=6.5e-07  Score=94.03  Aligned_cols=44  Identities=14%  Similarity=0.180  Sum_probs=40.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s   63 (486)
                      +.+|||||||+|.+|+.||.+|++.|++|+++|+++.+||.|..
T Consensus         2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n   45 (471)
T PRK06467          2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLN   45 (471)
T ss_pred             CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccC
Confidence            35799999999999999999999999999999999999997643

>PRK06370 mercuric reductase; Validated

Probab=98.30  E-value=6.6e-07  Score=93.89  Aligned_cols=44  Identities=25%  Similarity=0.422  Sum_probs=39.5

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s   63 (486)
                      +|.+|||||||+|.+|+.||.+|++.|++|+++|+. .+||.|..
T Consensus         2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~   45 (463)
T PRK06370          2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCVN   45 (463)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCceec
Confidence            567899999999999999999999999999999986 67777654

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.30  E-value=6.2e-07  Score=94.06  Aligned_cols=43  Identities=28%  Similarity=0.366  Sum_probs=39.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s   63 (486)
                      |.+|||||||+|.+|+.||.+|++.|++|+++|+ +.+||.|..
T Consensus         1 m~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~   43 (460)
T PRK06292          1 MEKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLN   43 (460)
T ss_pred             CCcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Cccccceec
Confidence            4569999999999999999999999999999999 789998754

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.30  E-value=6.7e-07  Score=87.53  Aligned_cols=37  Identities=24%  Similarity=0.430  Sum_probs=35.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      |||+|||||++||++|+.|++.|.+|+|+|++...+.
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~   37 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRY   37 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc
Confidence            7999999999999999999999999999999988765

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.30  E-value=7.5e-07  Score=94.34  Aligned_cols=44  Identities=32%  Similarity=0.481  Sum_probs=38.9

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (486)
                      ++.+|||||||||++|+.+|+.|+++|.+|++||+++..+|...
T Consensus         3 ~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~GtS~   46 (502)
T PRK13369          3 EPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSS   46 (502)
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCCch
Confidence            35679999999999999999999999999999999987665443

>PRK06116 glutathione reductase; Validated

Probab=98.29  E-value=6.1e-07  Score=93.79  Aligned_cols=42  Identities=26%  Similarity=0.366  Sum_probs=38.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s   63 (486)
                      .+|||||||+|.+|+.||..|++.|++|+++|++ .+||.|..
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n   44 (450)
T PRK06116          3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVN   44 (450)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhc
Confidence            4699999999999999999999999999999996 89997743

>PRK08013 oxidoreductase; Provisional

Probab=98.27  E-value=7.8e-07  Score=91.52  Aligned_cols=38  Identities=18%  Similarity=0.273  Sum_probs=35.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (486)
                      |.++||+|||||++||++|+.|++.|++|+|+|+++..
T Consensus         1 m~~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~   38 (400)
T PRK08013          1 MQSVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPE   38 (400)
T ss_pred             CCcCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCc
Confidence            45689999999999999999999999999999998764

>PTZ00058 glutathione reductase; Provisional

Probab=98.27  E-value=1e-06  Score=93.91  Aligned_cols=54  Identities=20%  Similarity=0.329  Sum_probs=45.6

Q ss_pred             CCCCC-CCCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcccc
Q 011414           10 LPVPP-YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (486)
Q Consensus        10 ~~~~~-~~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~   64 (486)
                      -|+|. ++.-...+|||||||+|.+|..||..+++.|++|+++|++ .+||.|-..
T Consensus        35 ~~~~~~~~~~~~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln~   89 (561)
T PTZ00058         35 SSAPTHLKKKPRMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVNV   89 (561)
T ss_pred             cCcccccccCCCccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-ccccccccc
Confidence            45663 6655556799999999999999999999999999999996 799987653

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.26  E-value=8.2e-07  Score=93.17  Aligned_cols=42  Identities=26%  Similarity=0.425  Sum_probs=38.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcccc
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~   64 (486)
                      +|||||||+|.+|+.||..|++.|++|+++|+ +.+||.|...
T Consensus         1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~   42 (461)
T TIGR01350         1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNV   42 (461)
T ss_pred             CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeec
Confidence            48999999999999999999999999999999 8999987643

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=98.25  E-value=4.2e-05  Score=77.88  Aligned_cols=56  Identities=16%  Similarity=0.138  Sum_probs=46.5

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCC--cEEEcCEEEE-CCCC
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG--QDILSHKLVL-DPSF  336 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G--~~i~A~~VI~-~p~~  336 (486)
                      ..|.++|.+.++.+||+++.+..|.++..+  ++++++|.+.++  ..++||+||+ ...+
T Consensus       263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~--~~~v~~V~t~~g~~~~l~AD~vVLAaGaw  321 (419)
T TIGR03378       263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFE--GNRVTRIHTRNHRDIPLRADHFVLASGSF  321 (419)
T ss_pred             HHHHHHHHHHHHHCCCEEEECcEEEEEEee--CCeEEEEEecCCccceEECCEEEEccCCC
Confidence            478899999999999999999999999887  677778877676  4799999885 3444

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=98.25  E-value=1.9e-05  Score=82.15  Aligned_cols=58  Identities=31%  Similarity=0.421  Sum_probs=49.3

Q ss_pred             eEeecCCc---chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEE
Q 011414          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV  331 (486)
Q Consensus       271 ~~~p~gG~---~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI  331 (486)
                      .+.|.-|.   ..++|++++.+..+|+.|.-+++|++|...  +++..+|.+.-|. |+|.+||
T Consensus       176 Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~--~~~~~gVeT~~G~-iet~~~V  236 (856)
T KOG2844|consen  176 LYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVE--TDKFGGVETPHGS-IETECVV  236 (856)
T ss_pred             eecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEee--cCCccceeccCcc-eecceEE
Confidence            44577774   689999999999999999999999999987  5566799987774 8999988

>PRK09126 hypothetical protein; Provisional

Probab=98.24  E-value=9.9e-07  Score=90.44  Aligned_cols=36  Identities=22%  Similarity=0.410  Sum_probs=34.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (486)
                      ++||||||||++||++|..|+++|++|+|+|+++.+
T Consensus         3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~   38 (392)
T PRK09126          3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLA   38 (392)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcc
Confidence            689999999999999999999999999999999875

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.23  E-value=9.5e-07  Score=92.21  Aligned_cols=41  Identities=27%  Similarity=0.354  Sum_probs=38.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s   63 (486)
                      +|||||||+|.+|+.||.++++.|++|+++|+ +.+||.|..
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~~   42 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCVI   42 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceeec
Confidence            59999999999999999999999999999999 589998764

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.23  E-value=1.1e-06  Score=92.19  Aligned_cols=44  Identities=20%  Similarity=0.388  Sum_probs=39.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcccc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~   64 (486)
                      |.+|||||||+|.+|++||.+|++.|++|+++|++ .+||.|...
T Consensus         2 ~~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~~   45 (466)
T PRK07818          2 MTHYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLNV   45 (466)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceecC
Confidence            35699999999999999999999999999999985 788877644

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.23  E-value=1.1e-06  Score=89.99  Aligned_cols=36  Identities=19%  Similarity=0.403  Sum_probs=33.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      |.++||+|||||++||++|+.|++.|++|+|+|+.+
T Consensus         1 ~~~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~   36 (384)
T PRK08849          1 MNKYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE   36 (384)
T ss_pred             CCcccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            345899999999999999999999999999999874

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=98.23  E-value=1.1e-06  Score=92.99  Aligned_cols=41  Identities=32%  Similarity=0.468  Sum_probs=37.2

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccC-CCCCCC
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN-PFYGSH   60 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~-~~~GG~   60 (486)
                      +.+|||||||||++|+.||..+||.|++|+++|++ +.+|+.
T Consensus         2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m   43 (618)
T PRK05192          2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQM   43 (618)
T ss_pred             CccceEEEECchHHHHHHHHHHHHcCCcEEEEeccccccccc
Confidence            45799999999999999999999999999999998 477763

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.22  E-value=1.2e-06  Score=92.06  Aligned_cols=43  Identities=26%  Similarity=0.333  Sum_probs=39.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcccc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~   64 (486)
                      .+|||||||||.+|+.||..|++.|++|+++|++. +||.|...
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~   45 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNR   45 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeec
Confidence            46999999999999999999999999999999987 99977543

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=98.22  E-value=1.3e-06  Score=89.73  Aligned_cols=53  Identities=17%  Similarity=0.182  Sum_probs=42.5

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEE-ECC
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDP  334 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI-~~p  334 (486)
                      ..+.++|.+.++..|.+++.+++|+++..+  ++. +.|++++|++++||.|| ++.
T Consensus       113 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~--~~~-v~v~~~~g~~~~a~~vV~AdG  166 (392)
T PRK08773        113 DLLVDRLWAALHAAGVQLHCPARVVALEQD--ADR-VRLRLDDGRRLEAALAIAADG  166 (392)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCeEEEEEec--CCe-EEEEECCCCEEEeCEEEEecC
Confidence            467778888888889999999999999875  444 45777889999999988 443

>PLN02463 lycopene beta cyclase

Probab=98.22  E-value=1.5e-06  Score=90.08  Aligned_cols=47  Identities=30%  Similarity=0.626  Sum_probs=41.2

Q ss_pred             CCCCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414            9 ELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus         9 ~~~~~~~~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ....|.|.+-....|||||||||++||++|+.|+++|++|+++|+++
T Consensus        15 ~~~~~~~~~~~~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~   61 (447)
T PLN02463         15 DFELPRFDPSKSRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSP   61 (447)
T ss_pred             cccccCCCCccccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCc
Confidence            44556677766778999999999999999999999999999999975

>PRK07045 putative monooxygenase; Reviewed

Probab=98.22  E-value=1.2e-06  Score=89.72  Aligned_cols=39  Identities=18%  Similarity=0.332  Sum_probs=35.7

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (486)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (486)
                      ++..+||+|||||++||++|..|+++|++|+|+|+++..
T Consensus         2 ~~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~   40 (388)
T PRK07045          2 KNNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN   40 (388)
T ss_pred             CCceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence            346789999999999999999999999999999999754

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=98.22  E-value=9.8e-07  Score=91.30  Aligned_cols=54  Identities=26%  Similarity=0.396  Sum_probs=46.5

Q ss_pred             CcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeC---CCc--EEEcCEEEE
Q 011414          277 GQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SGQ--DILSHKLVL  332 (486)
Q Consensus       277 G~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~---~G~--~i~A~~VI~  332 (486)
                      +...+.+.|.+.++++|++|+++++|+++.++  +++++||...   +|+  +|+|+.||+
T Consensus       139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e--~g~V~Gv~~~~~~~g~~~~i~A~aVIl  197 (417)
T PF00890_consen  139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITE--DGRVTGVVAENPADGEFVRIKAKAVIL  197 (417)
T ss_dssp             HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEE--TTEEEEEEEEETTTCEEEEEEESEEEE
T ss_pred             cHHHHHHHHHHHHhhcCeeeeccceeeeEEEe--CCceeEEEEEECCCCeEEEEeeeEEEe
Confidence            34689999999999999999999999999998  7899999875   455  478999885

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.22  E-value=1.2e-06  Score=91.54  Aligned_cols=41  Identities=22%  Similarity=0.352  Sum_probs=37.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s   63 (486)
                      +|||||||+|.+|+.||..|++.|++|+++|++ .+||.|..
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~~   42 (450)
T TIGR01421         2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCVN   42 (450)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-ccccceec
Confidence            599999999999999999999999999999995 68997753

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.21  E-value=1.3e-06  Score=91.81  Aligned_cols=43  Identities=21%  Similarity=0.284  Sum_probs=39.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcccc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~   64 (486)
                      ..|||||||+|.+|+.||.+|++.|++|+++|++ .+||.|...
T Consensus         3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~   45 (472)
T PRK05976          3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHK   45 (472)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcC
Confidence            4799999999999999999999999999999996 889988643

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=98.21  E-value=1.2e-06  Score=90.31  Aligned_cols=36  Identities=19%  Similarity=0.298  Sum_probs=33.7

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 011414           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (486)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (486)
                      +|..+||+|||||++||++|+.|+++|++|+|+|++
T Consensus         1 ~m~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~   36 (405)
T PRK08850          1 MMQSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ   36 (405)
T ss_pred             CCCcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence            356789999999999999999999999999999996

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=98.20  E-value=9.6e-07  Score=81.68  Aligned_cols=38  Identities=24%  Similarity=0.322  Sum_probs=32.6

Q ss_pred             EEECCChhHHHHHHHHhhCCCc-EEEEccCCCCCCCccc
Q 011414           26 IVIGTGLPESVISAAASASGKS-VLHLDPNPFYGSHFSS   63 (486)
Q Consensus        26 iIIGaGl~GL~aA~~La~~G~~-VlvlE~~~~~GG~~~s   63 (486)
                      +|||||++||++|+.|.+.|.+ |++||+++.+||.|..
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~   39 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRR   39 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHC
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEE
Confidence            7999999999999999999999 9999999999999885

...

>PRK06184 hypothetical protein; Provisional

Probab=98.19  E-value=1.7e-06  Score=91.81  Aligned_cols=45  Identities=20%  Similarity=0.298  Sum_probs=38.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC--CCCcccc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY--GSHFSSL   64 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~--GG~~~s~   64 (486)
                      |+++||+|||||++||++|+.|++.|.+|+|+||++.+  .++...+
T Consensus         1 ~~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l   47 (502)
T PRK06184          1 YTTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGI   47 (502)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceee
Confidence            46799999999999999999999999999999999866  4444444

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=98.19  E-value=1.8e-06  Score=82.69  Aligned_cols=43  Identities=35%  Similarity=0.479  Sum_probs=37.7

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC--CCCCc
Q 011414           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF--YGSHF   61 (486)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~--~GG~~   61 (486)
                      ++.++||||||+|++||.||+.||.+|++|+++|+...  +||.+
T Consensus         2 d~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQA   46 (552)
T COG3573           2 DGLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQA   46 (552)
T ss_pred             CcccccEEEECccHHHHHHHHHHHhcCceEEEEccccccccccee
Confidence            45689999999999999999999999999999998754  66653

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=98.19  E-value=1.4e-06  Score=89.22  Aligned_cols=38  Identities=18%  Similarity=0.297  Sum_probs=34.7

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      ..++|||||||||++||++|+.|+++|++|+|+|++..
T Consensus         2 ~~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~   39 (391)
T PRK08020          2 TNQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAP   39 (391)
T ss_pred             CcccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCC
Confidence            34679999999999999999999999999999999753

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=98.18  E-value=1.9e-06  Score=88.33  Aligned_cols=32  Identities=22%  Similarity=0.429  Sum_probs=31.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (486)
                      |||||||||++|++||..|++.|++|+++|++
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~   32 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGIETILLERA   32 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence            79999999999999999999999999999998

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PLN02661 Putative thiazole synthesis

Probab=98.18  E-value=1.5e-06  Score=86.01  Aligned_cols=38  Identities=16%  Similarity=0.221  Sum_probs=36.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhC-CCcEEEEccCCCCCC
Q 011414           22 AFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFYGS   59 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~-G~~VlvlE~~~~~GG   59 (486)
                      ++||+|||+|++|++||+.|+++ |++|+++|++..+||
T Consensus        92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GG  130 (357)
T PLN02661         92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGG  130 (357)
T ss_pred             cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccccc
Confidence            58999999999999999999986 999999999999987

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=98.18  E-value=1.3e-06  Score=86.06  Aligned_cols=39  Identities=36%  Similarity=0.625  Sum_probs=33.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCC-CcEEEEccCCCCCCCc
Q 011414           23 FDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGSHF   61 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G-~~VlvlE~~~~~GG~~   61 (486)
                      ||+||||+|.+|+++|.+|+++| ++|+|||+..++....
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~   40 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPED   40 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSG
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCcccc
Confidence            79999999999999999999998 6999999988776555

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PRK07236 hypothetical protein; Provisional

Probab=98.17  E-value=1.9e-06  Score=88.25  Aligned_cols=38  Identities=18%  Similarity=0.167  Sum_probs=35.0

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      .|...||||||||++||++|..|++.|++|+|+|+++.
T Consensus         3 ~~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (386)
T PRK07236          3 HMSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT   40 (386)
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            35668999999999999999999999999999999864

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.16  E-value=1.9e-06  Score=84.73  Aligned_cols=40  Identities=20%  Similarity=0.371  Sum_probs=36.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s   63 (486)
                      |||||||||++||.||..|++.|++|+++|+++ +||.+..
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~   40 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTT   40 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceee
Confidence            699999999999999999999999999999987 7886543

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK13748 putative mercuric reductase; Provisional

Probab=98.16  E-value=1.7e-06  Score=93.07  Aligned_cols=42  Identities=19%  Similarity=0.276  Sum_probs=39.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s   63 (486)
                      .+|||||||||.+|++||..|++.|++|+++|++ .+||-|..
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n  138 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVN  138 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccc
Confidence            5799999999999999999999999999999997 89998764

>TIGR02028 ChlP geranylgeranyl reductase

Probab=98.16  E-value=2e-06  Score=88.40  Aligned_cols=37  Identities=16%  Similarity=0.319  Sum_probs=34.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      +||||||||++|++||..|+++|++|+++|++...+.
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~   37 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAK   37 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCC
Confidence            6999999999999999999999999999999876543

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=98.16  E-value=1.9e-06  Score=91.48  Aligned_cols=41  Identities=22%  Similarity=0.330  Sum_probs=38.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (486)
                      .++||||||+| +||+||+.++++|.+|+||||.+.+||.+.
T Consensus         6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t~   46 (513)
T PRK12837          6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTTA   46 (513)
T ss_pred             CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCccee
Confidence            47899999999 999999999999999999999999998653

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=98.16  E-value=2e-06  Score=92.09  Aligned_cols=42  Identities=36%  Similarity=0.472  Sum_probs=39.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC--CCCCCcc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP--FYGSHFS   62 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~--~~GG~~~   62 (486)
                      .++||||||+|.+||+||+.++++|.+|+||||.+  .+||.+.
T Consensus         3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~   46 (549)
T PRK12834          3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAF   46 (549)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCcee
Confidence            46899999999999999999999999999999999  8899654

>PRK14694 putative mercuric reductase; Provisional

Probab=98.16  E-value=2.1e-06  Score=90.27  Aligned_cols=44  Identities=18%  Similarity=0.285  Sum_probs=39.8

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s   63 (486)
                      +...|||||||||.+|++||..|++.|++|+++|++ .+||-|..
T Consensus         3 ~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n   46 (468)
T PRK14694          3 SDNNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVN   46 (468)
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceec
Confidence            346799999999999999999999999999999996 79998764

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.16  E-value=2.1e-06  Score=90.41  Aligned_cols=44  Identities=27%  Similarity=0.444  Sum_probs=39.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEcc------CCCCCCCcccc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDP------NPFYGSHFSSL   64 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~------~~~~GG~~~s~   64 (486)
                      .+||+||||+|.+|++||.+|++.|++|+++|+      +..+||.|...
T Consensus         3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~   52 (475)
T PRK06327          3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNV   52 (475)
T ss_pred             cceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccc
Confidence            469999999999999999999999999999998      47889988643

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=98.15  E-value=2.7e-06  Score=95.22  Aligned_cols=44  Identities=18%  Similarity=0.216  Sum_probs=40.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s   63 (486)
                      .+.+||+|||||.+||+||..|++.|++|+|+|+++.+||..+.
T Consensus       535 ~~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~  578 (1012)
T TIGR03315       535 SSAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKN  578 (1012)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeee
Confidence            35689999999999999999999999999999999999999754

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=98.15  E-value=2.1e-06  Score=89.51  Aligned_cols=53  Identities=25%  Similarity=0.290  Sum_probs=42.6

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeC--CCc--EEEcCEEEE
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA--SGQ--DILSHKLVL  332 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~--~G~--~i~A~~VI~  332 (486)
                      .++.+.|.+.++..|++++++++|++|..++ ++++++|++.  +|+  .+.|+.||+
T Consensus       130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~-~g~v~Gv~~~~~~g~~~~~~a~~VVl  186 (439)
T TIGR01813       130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDD-QGTVVGVVVKGKGKGIYIKAAKAVVL  186 (439)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEeeEeEECC-CCcEEEEEEEeCCCeEEEEecceEEE
Confidence            4788999999999999999999999998862 5678787653  343  368899884

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK08163 salicylate hydroxylase; Provisional

Probab=98.15  E-value=2.1e-06  Score=88.10  Aligned_cols=37  Identities=16%  Similarity=0.231  Sum_probs=34.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (486)
                      ...||+|||||++||++|..|+++|++|+|+||++.+
T Consensus         3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~   39 (396)
T PRK08163          3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEI   39 (396)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCccc
Confidence            4579999999999999999999999999999998754

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=98.14  E-value=2.5e-06  Score=91.79  Aligned_cols=44  Identities=25%  Similarity=0.433  Sum_probs=40.7

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (486)
                      +..++||||||+|.+||+||+.++++|.+|+||||.+..||...
T Consensus         6 ~~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~~   49 (574)
T PRK12842          6 NELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTA   49 (574)
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCccc
Confidence            44579999999999999999999999999999999999998764

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=98.13  E-value=2.5e-06  Score=87.14  Aligned_cols=59  Identities=32%  Similarity=0.363  Sum_probs=46.5

Q ss_pred             eEeecCCc---chHHHHHHHHHHHcC-cEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC
Q 011414          271 LIYPIYGQ---GELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (486)
Q Consensus       271 ~~~p~gG~---~~L~qal~r~~~~~G-g~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~  333 (486)
                      +.+|..|.   ..+.+++++.+..+| ..+..+++|..+..+  . +.++|++.+|. +.|++||+.
T Consensus       145 ~~~~~~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~--~-~~~~v~t~~g~-i~a~~vv~a  207 (387)
T COG0665         145 LFDPTGGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERD--G-RVVGVETDGGT-IEADKVVLA  207 (387)
T ss_pred             EecCCCCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEec--C-cEEEEEeCCcc-EEeCEEEEc
Confidence            55677775   578999999999999 455669999998764  3 66789887776 999999853

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=98.13  E-value=2.1e-06  Score=87.67  Aligned_cols=53  Identities=25%  Similarity=0.224  Sum_probs=42.2

Q ss_pred             chHHHHHHHHHHHcC-cEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEE-ECC
Q 011414          279 GELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDP  334 (486)
Q Consensus       279 ~~L~qal~r~~~~~G-g~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI-~~p  334 (486)
                      ..+.+.|.+.+...| ++++.+++|++|..+  ++. +.|++++|+++.||.|| ++.
T Consensus       106 ~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~--~~~-~~v~~~~g~~~~~~~vi~adG  160 (385)
T TIGR01988       106 RVLQQALWERLQEYPNVTLLCPARVVELPRH--SDH-VELTLDDGQQLRARLLVGADG  160 (385)
T ss_pred             HHHHHHHHHHHHhCCCcEEecCCeEEEEEec--CCe-eEEEECCCCEEEeeEEEEeCC
Confidence            467777888787888 999999999999875  444 46778899999999988 443

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.13  E-value=2.4e-06  Score=91.52  Aligned_cols=42  Identities=21%  Similarity=0.365  Sum_probs=38.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s   63 (486)
                      ..|||||||||.+||+||.+|++.|++|+++|++ .+||.+..
T Consensus         3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~   44 (555)
T TIGR03143         3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITI   44 (555)
T ss_pred             CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEe
Confidence            4599999999999999999999999999999995 78987653

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK06185 hypothetical protein; Provisional

Probab=98.12  E-value=2.5e-06  Score=87.97  Aligned_cols=37  Identities=16%  Similarity=0.219  Sum_probs=34.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      ..++||+|||||++|+++|+.|+++|++|+|+|+++.
T Consensus         4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~   40 (407)
T PRK06185          4 VETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD   40 (407)
T ss_pred             cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence            4679999999999999999999999999999999863

>PRK06834 hypothetical protein; Provisional

Probab=98.12  E-value=2.7e-06  Score=89.65  Aligned_cols=45  Identities=20%  Similarity=0.330  Sum_probs=38.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC---CCCCcccc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF---YGSHFSSL   64 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~---~GG~~~s~   64 (486)
                      |+++||||||||++||++|+.|++.|.+|+|+|+++.   .|.+...+
T Consensus         1 ~~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l   48 (488)
T PRK06834          1 MTEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGL   48 (488)
T ss_pred             CCcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeE
Confidence            5679999999999999999999999999999999875   34444443

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.12  E-value=2.5e-06  Score=87.73  Aligned_cols=45  Identities=18%  Similarity=0.206  Sum_probs=41.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcccc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~   64 (486)
                      +...+|+|||||.+||++|+.|.+.|++|+|+||.+.+||.|.--
T Consensus         4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~   48 (448)
T KOG1399|consen    4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYT   48 (448)
T ss_pred             CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeec
Confidence            445799999999999999999999999999999999999999865

>PLN02985 squalene monooxygenase

Probab=98.12  E-value=3.3e-06  Score=89.43  Aligned_cols=42  Identities=21%  Similarity=0.320  Sum_probs=37.5

Q ss_pred             CCCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           15 YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        15 ~~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      .++.....+||||||||++||++|+.|+++|++|+|+||...
T Consensus        36 ~~~~~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~   77 (514)
T PLN02985         36 AEERKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR   77 (514)
T ss_pred             cccCcCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence            455566789999999999999999999999999999999754

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=98.12  E-value=2.6e-06  Score=87.16  Aligned_cols=37  Identities=32%  Similarity=0.469  Sum_probs=34.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (486)
                      .+||+|||||++||++|+.|++.|++|+|+|+++.+.
T Consensus         5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~   41 (388)
T PRK07608          5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPR   41 (388)
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCcc
Confidence            5799999999999999999999999999999998753

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=98.11  E-value=2.3e-06  Score=85.77  Aligned_cols=44  Identities=20%  Similarity=0.367  Sum_probs=41.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccc
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS   65 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~   65 (486)
                      .-+++|||||++|++||..|++.|++|.++||++.+||+...++
T Consensus       124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~  167 (622)
T COG1148         124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLN  167 (622)
T ss_pred             ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhh
Confidence            34799999999999999999999999999999999999988764

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=98.11  E-value=2.6e-06  Score=87.22  Aligned_cols=37  Identities=30%  Similarity=0.432  Sum_probs=34.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (486)
                      ||||||||++|+++|+.|++.|++|+|+|+++..||.
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~   37 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGN   37 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCC
Confidence            8999999999999999999999999999999877763

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=98.10  E-value=3.2e-06  Score=85.84  Aligned_cols=34  Identities=29%  Similarity=0.460  Sum_probs=32.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      +||+|||+|+.|+++|+.|+++|++|+|||++..
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~   34 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR   34 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            6999999999999999999999999999999875

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=98.10  E-value=2.9e-06  Score=82.84  Aligned_cols=36  Identities=25%  Similarity=0.490  Sum_probs=33.7

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 011414           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (486)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (486)
                      ....+||||||||.+|++.|+.|+|.|+||+|+||.
T Consensus        42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD   77 (509)
T KOG1298|consen   42 NDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERD   77 (509)
T ss_pred             cCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence            456799999999999999999999999999999995

>PRK07190 hypothetical protein; Provisional

Probab=98.10  E-value=3.1e-06  Score=89.12  Aligned_cols=38  Identities=16%  Similarity=0.196  Sum_probs=35.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (486)
                      +..+||||||||++||++|+.|+++|.+|+|+||++.+
T Consensus         3 ~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~   40 (487)
T PRK07190          3 TQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGP   40 (487)
T ss_pred             CccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence            45689999999999999999999999999999999875

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.09  E-value=2.5e-06  Score=87.86  Aligned_cols=52  Identities=13%  Similarity=0.093  Sum_probs=41.3

Q ss_pred             hHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEE-ECC
Q 011414          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDP  334 (486)
Q Consensus       280 ~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI-~~p  334 (486)
                      .+-++|.+.++..|.+++.+++|.+|..+  ++. +.|++++|++++||.|| ++.
T Consensus       113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~--~~~-v~v~~~~g~~~~a~~vVgAdG  165 (405)
T PRK05714        113 VVQDALLERLHDSDIGLLANARLEQMRRS--GDD-WLLTLADGRQLRAPLVVAADG  165 (405)
T ss_pred             HHHHHHHHHHhcCCCEEEcCCEEEEEEEc--CCe-EEEEECCCCEEEeCEEEEecC
Confidence            56677777777789999999999999765  333 46778899999999998 443

>PRK12831 putative oxidoreductase; Provisional

Probab=98.09  E-value=3.8e-06  Score=87.94  Aligned_cols=44  Identities=18%  Similarity=0.169  Sum_probs=40.9

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (486)
                      ..+..||+|||+|.+||+||.+|++.|++|+|+|+++.+||.+.
T Consensus       137 ~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~  180 (464)
T PRK12831        137 EKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV  180 (464)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence            45678999999999999999999999999999999999999874

>PLN02697 lycopene epsilon cyclase

Probab=98.09  E-value=4.5e-06  Score=88.13  Aligned_cols=39  Identities=26%  Similarity=0.405  Sum_probs=34.8

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (486)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (486)
                      ....+||||||||++||++|..|++.|++|+++|+....
T Consensus       105 ~~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~  143 (529)
T PLN02697        105 GDGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPF  143 (529)
T ss_pred             ccCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccC
Confidence            445799999999999999999999999999999986443

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.09  E-value=2.9e-06  Score=87.05  Aligned_cols=35  Identities=23%  Similarity=0.416  Sum_probs=33.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhC---CCcEEEEccC
Q 011414           20 PTAFDLIVIGTGLPESVISAAASAS---GKSVLHLDPN   54 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~---G~~VlvlE~~   54 (486)
                      |..+||+|||||++||++|+.|+++   |.+|+|+|++
T Consensus         1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~   38 (395)
T PRK05732          1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF   38 (395)
T ss_pred             CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence            4678999999999999999999998   9999999996

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.09  E-value=3.3e-06  Score=82.90  Aligned_cols=46  Identities=20%  Similarity=0.278  Sum_probs=38.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS   65 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~   65 (486)
                      +..|||||||+|.+||+||.+++|+|.++.+++....+||......
T Consensus         1 ~~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~   46 (305)
T COG0492           1 MKIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTT   46 (305)
T ss_pred             CceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccce
Confidence            4579999999999999999999999999666666677887665543

>TIGR02053 MerA mercuric reductase

Probab=98.08  E-value=3.2e-06  Score=88.72  Aligned_cols=40  Identities=28%  Similarity=0.520  Sum_probs=36.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s   63 (486)
                      |||||||+|.+|++||.+|++.|++|+++|+.. +||.|-.
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n   40 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVN   40 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeee
Confidence            799999999999999999999999999999976 8887653

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK14727 putative mercuric reductase; Provisional

Probab=98.08  E-value=3.1e-06  Score=89.17  Aligned_cols=45  Identities=16%  Similarity=0.267  Sum_probs=41.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcccc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~   64 (486)
                      +..|||||||+|.+|+.+|..|++.|++|+++|+++.+||.|...
T Consensus        14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~   58 (479)
T PRK14727         14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNV   58 (479)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccc
Confidence            346899999999999999999999999999999999999988653

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=98.07  E-value=3.2e-06  Score=86.72  Aligned_cols=35  Identities=14%  Similarity=0.234  Sum_probs=33.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      .+||+|||||++||++|+.|+++|++|+|+|+++.
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~   36 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR   36 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            37999999999999999999999999999999874

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=98.07  E-value=3.6e-06  Score=91.21  Aligned_cols=41  Identities=20%  Similarity=0.357  Sum_probs=37.2

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (486)
                      ...|||||||||+.|+.+|+.|+++|++|++||+++.-+|-
T Consensus        69 ~~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~Gt  109 (627)
T PLN02464         69 AEPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSGT  109 (627)
T ss_pred             CCccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCCc
Confidence            35599999999999999999999999999999999876663

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.07  E-value=3.8e-06  Score=89.93  Aligned_cols=41  Identities=24%  Similarity=0.358  Sum_probs=38.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (486)
                      .++||||||+|.+|++||..|+++|++|+|||++..+||.+
T Consensus         5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~   45 (557)
T PRK12844          5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGST   45 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcee
Confidence            47899999999999999999999999999999999999965

>PTZ00367 squalene epoxidase; Provisional

Probab=98.06  E-value=3.9e-06  Score=89.46  Aligned_cols=40  Identities=28%  Similarity=0.534  Sum_probs=35.6

Q ss_pred             CCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           16 PPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        16 ~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      |.....++||||||||++|+++|..|+++|++|+|+|++.
T Consensus        27 ~~~~~~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~   66 (567)
T PTZ00367         27 PARTNYDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL   66 (567)
T ss_pred             ccccccCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence            3344467999999999999999999999999999999975

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.06  E-value=4.4e-06  Score=90.08  Aligned_cols=46  Identities=24%  Similarity=0.249  Sum_probs=40.2

Q ss_pred             CCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCc
Q 011414           16 PPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (486)
Q Consensus        16 ~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (486)
                      -+|+..++||||||+|.+||.||+.++++|.+|+||||+...||.+
T Consensus         6 ~~~~~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~t   51 (591)
T PRK07057          6 TSLPRRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHT   51 (591)
T ss_pred             cCcccccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCc
Confidence            3455667999999999999999999999999999999988777643

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.05  E-value=4.4e-06  Score=86.28  Aligned_cols=45  Identities=22%  Similarity=0.330  Sum_probs=42.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcccc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~   64 (486)
                      +.+||+||||+|.+|..||.++++.|++|+++|+...+||-|-.+
T Consensus         2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~   46 (454)
T COG1249           2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNV   46 (454)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEee
Confidence            467999999999999999999999999999999999999988765

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=98.05  E-value=5.2e-05  Score=79.11  Aligned_cols=53  Identities=23%  Similarity=0.349  Sum_probs=42.0

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEE-EC
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LD  333 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI-~~  333 (486)
                      ..+-+-|.+.+...|++++.++ |..+..+. +|.+++|++.+|++++||.|| ++
T Consensus       154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~-~g~i~~v~~~~g~~i~ad~~IDAS  207 (454)
T PF04820_consen  154 AKFDQFLRRHAEERGVEVIEGT-VVDVELDE-DGRITAVRLDDGRTIEADFFIDAS  207 (454)
T ss_dssp             HHHHHHHHHHHHHTT-EEEET--EEEEEE-T-TSEEEEEEETTSEEEEESEEEE-S
T ss_pred             HHHHHHHHHHHhcCCCEEEeCE-EEEEEEcC-CCCEEEEEECCCCEEEEeEEEECC
Confidence            5677888888999999998875 78887774 788889999999999999999 54

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=98.04  E-value=3.7e-06  Score=85.86  Aligned_cols=53  Identities=21%  Similarity=0.246  Sum_probs=41.8

Q ss_pred             chHHHHHHHHHHH-cCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEE-ECC
Q 011414          279 GELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDP  334 (486)
Q Consensus       279 ~~L~qal~r~~~~-~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI-~~p  334 (486)
                      ..+.+.|.+.+.. .|++++++++|++|..+  ++. +.|++++|++++||.|| ++.
T Consensus       105 ~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~--~~~-~~v~~~~g~~~~ad~vV~AdG  159 (382)
T TIGR01984       105 ADLGQALLSRLALLTNIQLYCPARYKEIIRN--QDY-VRVTLDNGQQLRAKLLIAADG  159 (382)
T ss_pred             HHHHHHHHHHHHhCCCcEEEcCCeEEEEEEc--CCe-EEEEECCCCEEEeeEEEEecC
Confidence            4677888887777 49999999999999865  333 46777889899999988 444

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK06847 hypothetical protein; Provisional

Probab=98.04  E-value=5e-06  Score=84.67  Aligned_cols=51  Identities=18%  Similarity=0.131  Sum_probs=41.7

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~  332 (486)
                      .++.+.|.+.+...|.++++++.|++|..+  ++. +.|.+.+|+++.||.||.
T Consensus       107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~--~~~-~~v~~~~g~~~~ad~vI~  157 (375)
T PRK06847        107 PALARILADAARAAGADVRLGTTVTAIEQD--DDG-VTVTFSDGTTGRYDLVVG  157 (375)
T ss_pred             HHHHHHHHHHHHHhCCEEEeCCEEEEEEEc--CCE-EEEEEcCCCEEEcCEEEE
Confidence            467788888888889999999999999765  443 567778999999999884

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.04  E-value=4.4e-06  Score=89.89  Aligned_cols=41  Identities=22%  Similarity=0.402  Sum_probs=38.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (486)
                      .++||||||+|.+||+||+.++++|.+|+||||.+..||.+
T Consensus        10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~t   50 (584)
T PRK12835         10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGST   50 (584)
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCchH
Confidence            46899999999999999999999999999999999998853

>PRK06126 hypothetical protein; Provisional

Probab=98.03  E-value=4.8e-06  Score=89.27  Aligned_cols=38  Identities=8%  Similarity=0.179  Sum_probs=35.0

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      .+.++||+|||||++||++|+.|++.|++|+|+|+++.
T Consensus         4 ~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~   41 (545)
T PRK06126          4 NTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG   41 (545)
T ss_pred             CCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            44678999999999999999999999999999999874

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.03  E-value=4.4e-06  Score=85.20  Aligned_cols=33  Identities=12%  Similarity=0.308  Sum_probs=31.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      +||+|||||++|+++|..|++.|++|+|+|+++
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~   34 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKS   34 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCC
Confidence            799999999999999999999999999999975

>PTZ00052 thioredoxin reductase; Provisional

Probab=98.02  E-value=4.5e-06  Score=88.26  Aligned_cols=50  Identities=12%  Similarity=0.161  Sum_probs=40.5

Q ss_pred             hHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE
Q 011414          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (486)
Q Consensus       280 ~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~  332 (486)
                      ++.+.+.+..+..|.++++++.|.+|...  ++. ..|++.+|+++.+|.||+
T Consensus       223 ~~~~~l~~~l~~~GV~i~~~~~v~~v~~~--~~~-~~v~~~~g~~i~~D~vl~  272 (499)
T PTZ00052        223 QCSEKVVEYMKEQGTLFLEGVVPINIEKM--DDK-IKVLFSDGTTELFDTVLY  272 (499)
T ss_pred             HHHHHHHHHHHHcCCEEEcCCeEEEEEEc--CCe-EEEEECCCCEEEcCEEEE
Confidence            56778888888999999999999998754  333 457777899999999885

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.02  E-value=6e-06  Score=88.52  Aligned_cols=43  Identities=26%  Similarity=0.526  Sum_probs=39.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (486)
                      ..++||||||+|.+|++||+.++++|.+|+||||+..+||.+.
T Consensus         5 ~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~~   47 (557)
T PRK07843          5 VQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTA   47 (557)
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCcccc
Confidence            3578999999999999999999999999999999999988543

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=98.02  E-value=6.8e-06  Score=91.72  Aligned_cols=44  Identities=16%  Similarity=0.175  Sum_probs=40.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s   63 (486)
                      .+..+|+|||||.+||+||..|++.|++|+|+|+++.+||..+.
T Consensus       537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~  580 (1019)
T PRK09853        537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKN  580 (1019)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceee
Confidence            45679999999999999999999999999999999999998764

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=98.02  E-value=4.5e-06  Score=85.47  Aligned_cols=54  Identities=20%  Similarity=0.214  Sum_probs=43.4

Q ss_pred             cchHHHHHHHHHHHcC-cEEEeCCceeEEEEecCCCeEEEEEeC-CCcEEEcCEEE-ECC
Q 011414          278 QGELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRLA-SGQDILSHKLV-LDP  334 (486)
Q Consensus       278 ~~~L~qal~r~~~~~G-g~i~l~~~V~~I~~~~~~g~~~gV~~~-~G~~i~A~~VI-~~p  334 (486)
                      ...|-++|.+.+...+ .+++.++.|+.+..+  ++.+. |+++ +|++++||.|| ++.
T Consensus       103 ~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~--~~~v~-v~l~~dG~~~~a~llVgADG  159 (387)
T COG0654         103 RSDLLNALLEAARALPNVTLRFGAEVEAVEQD--GDGVT-VTLSFDGETLDADLLVGADG  159 (387)
T ss_pred             hHHHHHHHHHHHhhCCCcEEEcCceEEEEEEc--CCceE-EEEcCCCcEEecCEEEECCC
Confidence            4677788888887777 699999999999887  44444 7777 99999999999 554

>PRK12839 hypothetical protein; Provisional

Probab=98.02  E-value=6e-06  Score=88.56  Aligned_cols=45  Identities=22%  Similarity=0.349  Sum_probs=41.0

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s   63 (486)
                      +..++||||||+|.+|++||+.|+++|.+|+++||+..+||.+..
T Consensus         5 ~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~   49 (572)
T PRK12839          5 MTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATAW   49 (572)
T ss_pred             cCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCccccc
Confidence            445799999999999999999999999999999999999997653

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.01  E-value=5.5e-06  Score=89.27  Aligned_cols=40  Identities=28%  Similarity=0.335  Sum_probs=36.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (486)
                      ..+||||||+|++||+||+.++++|.+|+|+||....||.
T Consensus         2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~   41 (589)
T PRK08641          2 AKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSH   41 (589)
T ss_pred             CCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence            4569999999999999999999999999999999987764

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.01  E-value=5.8e-06  Score=89.68  Aligned_cols=41  Identities=24%  Similarity=0.294  Sum_probs=37.0

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      +..++||||||+|++||.||..++++|.+|+|+||+...||
T Consensus         5 ~~~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g   45 (626)
T PRK07803          5 ERHSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKA   45 (626)
T ss_pred             cceeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCC
Confidence            34568999999999999999999999999999999987665

>PRK06753 hypothetical protein; Provisional

Probab=98.00  E-value=5.3e-06  Score=84.43  Aligned_cols=35  Identities=20%  Similarity=0.327  Sum_probs=33.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (486)
                      .||+|||||++||++|..|+++|++|+|+|+++..
T Consensus         1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~   35 (373)
T PRK06753          1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESV   35 (373)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence            38999999999999999999999999999999865

>PLN02507 glutathione reductase

Probab=98.00  E-value=6e-06  Score=87.28  Aligned_cols=52  Identities=15%  Similarity=0.239  Sum_probs=41.3

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~  333 (486)
                      .++.+.+.+..+..|.++++++.|++|..+  ++. +.|.+.+|+++.||.||+.
T Consensus       244 ~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~--~~~-~~v~~~~g~~i~~D~vl~a  295 (499)
T PLN02507        244 DEMRAVVARNLEGRGINLHPRTNLTQLTKT--EGG-IKVITDHGEEFVADVVLFA  295 (499)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEe--CCe-EEEEECCCcEEEcCEEEEe
Confidence            467777777888899999999999999765  333 3566778889999999853

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.00  E-value=6.4e-06  Score=88.39  Aligned_cols=52  Identities=15%  Similarity=0.106  Sum_probs=42.7

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeC---CCc--EEEcCEEEE
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SGQ--DILSHKLVL  332 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~---~G~--~i~A~~VI~  332 (486)
                      ..|.++|.+.+...|.++++++.++++..+  +|+++||...   +|+  .++|+.||+
T Consensus       136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~--~g~v~Gv~~~~~~~g~~~~i~AkaVVL  192 (566)
T PRK06452        136 MALLHTLFERTSGLNVDFYNEWFSLDLVTD--NKKVVGIVAMQMKTLTPFFFKTKAVVL  192 (566)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCcEEEEEEEE--CCEEEEEEEEECCCCeEEEEEeCeEEE
Confidence            368888988888889999999999999987  7899998753   333  578999885

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.00  E-value=7.7e-06  Score=89.15  Aligned_cols=49  Identities=20%  Similarity=0.269  Sum_probs=42.9

Q ss_pred             CCCCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414           14 PYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        14 ~~~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (486)
                      ..++..++..+|+|||+|.+||++|..|++.|++|+|+|+++.+||.++
T Consensus       302 ~~~~~~~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~  350 (639)
T PRK12809        302 DVSKVVPRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLT  350 (639)
T ss_pred             CCCcccCCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeee
Confidence            3334445678999999999999999999999999999999999999865

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.00  E-value=6.8e-06  Score=88.52  Aligned_cols=43  Identities=30%  Similarity=0.278  Sum_probs=38.7

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (486)
Q Consensus        18 ~~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (486)
                      |...++||||||+|.+||.||+.++++|.+|+++||....||.
T Consensus         3 ~~~~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~   45 (588)
T PRK08958          3 LPVREFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSH   45 (588)
T ss_pred             CCccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence            3446789999999999999999999999999999999887774

>PRK07804 L-aspartate oxidase; Provisional

Probab=97.99  E-value=7.6e-06  Score=87.41  Aligned_cols=41  Identities=24%  Similarity=0.396  Sum_probs=37.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (486)
                      ..++||||||+|++||.||+.+++.|.+|+|+||....||.
T Consensus        14 ~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~   54 (541)
T PRK07804         14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGS   54 (541)
T ss_pred             ccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCc
Confidence            34689999999999999999999999999999999987774

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=97.99  E-value=5.9e-06  Score=93.07  Aligned_cols=42  Identities=14%  Similarity=0.150  Sum_probs=39.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (486)
                      +..+|+|||+|.+||+||..|++.|++|+|+|+++++||..+
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~  346 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLR  346 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEE
Confidence            467999999999999999999999999999999999999865

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=97.99  E-value=5.7e-06  Score=84.90  Aligned_cols=35  Identities=14%  Similarity=0.233  Sum_probs=33.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      ++||+|||||++||++|+.|++.|++|+|+|+++.
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~   36 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR   36 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence            47999999999999999999999999999999874

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.98  E-value=8e-06  Score=89.33  Aligned_cols=43  Identities=19%  Similarity=0.287  Sum_probs=40.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (486)
                      .+..+|+|||+|.+||+||..|++.|++|+|+|+++.+||...
T Consensus       325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~  367 (654)
T PRK12769        325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLT  367 (654)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceee
Confidence            4567999999999999999999999999999999999999865

>PRK08244 hypothetical protein; Provisional

Probab=97.98  E-value=6.2e-06  Score=87.30  Aligned_cols=43  Identities=16%  Similarity=0.222  Sum_probs=36.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC--CCCcccc
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY--GSHFSSL   64 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~--GG~~~s~   64 (486)
                      ++||+|||||++||++|+.|++.|.+|+|+||++..  .|+..++
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l   46 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTL   46 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEe
Confidence            389999999999999999999999999999998754  4444443

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=97.98  E-value=5.7e-06  Score=86.18  Aligned_cols=34  Identities=29%  Similarity=0.416  Sum_probs=31.9

Q ss_pred             ccEEEECCChhHHHHHHHHhh----CCCcEEEEccCCC
Q 011414           23 FDLIVIGTGLPESVISAAASA----SGKSVLHLDPNPF   56 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~----~G~~VlvlE~~~~   56 (486)
                      |||+|||||++||++|+.|++    .|++|+|+|+++.
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~   38 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDN   38 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCC
Confidence            799999999999999999999    8999999999654

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=97.98  E-value=7.5e-06  Score=94.77  Aligned_cols=43  Identities=23%  Similarity=0.383  Sum_probs=39.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (486)
                      ..++||||||+|.+|++||+.++++|.+|+||||.+..||...
T Consensus       407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~  449 (1167)
T PTZ00306        407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSA  449 (1167)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchh
Confidence            3468999999999999999999999999999999999999753

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=97.97  E-value=1e-05  Score=86.79  Aligned_cols=44  Identities=20%  Similarity=0.331  Sum_probs=38.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC--CCCcccc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY--GSHFSSL   64 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~--GG~~~s~   64 (486)
                      .++||+|||||++||++|+.|++.|.+|+|+||++.+  +++...+
T Consensus        22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l   67 (547)
T PRK08132         22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICF   67 (547)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEE
Confidence            5689999999999999999999999999999999865  4444444

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=97.97  E-value=6.6e-06  Score=86.55  Aligned_cols=44  Identities=16%  Similarity=0.161  Sum_probs=38.3

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCCCCCcc
Q 011414           19 EPTAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~GG~~~   62 (486)
                      .+.++||||||||+.|+++|+.|++.  |++|+||||++.+|+..+
T Consensus         2 ~~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~a~~sS   47 (494)
T PRK05257          2 EESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGVALESS   47 (494)
T ss_pred             CCccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCchhhhcC
Confidence            34678999999999999999999984  899999999988776554

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=97.97  E-value=8e-06  Score=87.40  Aligned_cols=40  Identities=20%  Similarity=0.283  Sum_probs=36.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      +.++||+|||+|++||++|+.|++.|++|+|+|+++.++.
T Consensus         8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~   47 (538)
T PRK06183          8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYD   47 (538)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Confidence            4668999999999999999999999999999999986643

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.97  E-value=7.7e-06  Score=88.31  Aligned_cols=53  Identities=17%  Similarity=0.369  Sum_probs=43.1

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEe---CCCc--EEEcCEEEE
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~--~i~A~~VI~  332 (486)
                      ..|.++|.+.+...|.+++.++.|.++..+ ++|+++||..   .+|+  .+.|+.||+
T Consensus       149 ~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVL  206 (598)
T PRK09078        149 HAILHTLYQQSLKHNAEFFIEYFALDLIMD-DGGVCRGVVAWNLDDGTLHRFRAHMVVL  206 (598)
T ss_pred             HHHHHHHHHHHhhcCCEEEEeEEEEEEEEc-CCCEEEEEEEEECCCCcEEEEEcCEEEE
Confidence            378899988888899999999999999876 2478889864   3565  578999885

>PRK11445 putative oxidoreductase; Provisional

Probab=97.97  E-value=6.7e-06  Score=83.08  Aligned_cols=35  Identities=20%  Similarity=0.370  Sum_probs=32.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (486)
                      .|||+|||||++||++|..|+++ ++|+++|+++..
T Consensus         1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~   35 (351)
T PRK11445          1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQC   35 (351)
T ss_pred             CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCcc
Confidence            38999999999999999999999 999999999754

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=97.97  E-value=6.2e-06  Score=84.83  Aligned_cols=51  Identities=24%  Similarity=0.169  Sum_probs=41.7

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~  332 (486)
                      ..+.+.|.+.+...|.+++.+++|++|..+  ++. +.|++++|+++.||.||.
T Consensus       111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~--~~~-v~v~~~~g~~~~ad~vI~  161 (403)
T PRK07333        111 RVLINALRKRAEALGIDLREATSVTDFETR--DEG-VTVTLSDGSVLEARLLVA  161 (403)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEc--CCE-EEEEECCCCEEEeCEEEE
Confidence            467788888888889999999999999765  443 467778999999999984

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=97.97  E-value=1.1e-05  Score=84.39  Aligned_cols=44  Identities=20%  Similarity=0.218  Sum_probs=40.4

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (486)
                      .++.+||+|||+|.+||+||..|++.|++|+|+|+++.+||.+.
T Consensus       130 ~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~  173 (449)
T TIGR01316       130 PSTHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVT  173 (449)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEee
Confidence            44678999999999999999999999999999999999999754

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK07538 hypothetical protein; Provisional

Probab=97.96  E-value=7e-06  Score=84.84  Aligned_cols=35  Identities=14%  Similarity=0.356  Sum_probs=32.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (486)
                      .||+|||||++||++|..|+++|++|+|+|+++.+
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   35 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL   35 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence            48999999999999999999999999999998654

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=97.96  E-value=8.3e-06  Score=88.29  Aligned_cols=53  Identities=17%  Similarity=0.371  Sum_probs=43.3

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEe---CCCc--EEEcCEEEE
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~--~i~A~~VI~  332 (486)
                      ..|.++|.+.+...|.+++.++.|.++..+ ++|+++||..   .+|+  .++|+.||+
T Consensus       166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVL  223 (617)
T PTZ00139        166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMD-EDGECRGVIAMSMEDGSIHRFRAHYTVI  223 (617)
T ss_pred             HHHHHHHHHHHHhCCCEEEeceEEEEEEEC-CCCEEEEEEEEECCCCeEEEEECCcEEE
Confidence            478899999888999999999999999873 2788888864   3564  478999884

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=97.96  E-value=6.4e-06  Score=86.53  Aligned_cols=62  Identities=16%  Similarity=0.130  Sum_probs=45.9

Q ss_pred             ceEeecCCc---chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEe---CCC--cEEEcCEEEEC
Q 011414          270 ALIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASG--QDILSHKLVLD  333 (486)
Q Consensus       270 ~~~~p~gG~---~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G--~~i~A~~VI~~  333 (486)
                      +.+.|.+|.   ..+.++|.+.++..|++++++++|++|..+. ++. +.|++   .+|  .+++|++||+.
T Consensus       166 Al~~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~-~~~-v~v~~~~~~~g~~~~i~A~~VV~A  235 (483)
T TIGR01320       166 ANWAAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQS-DGS-WTVTVKNTRTGGKRTLNTRFVFVG  235 (483)
T ss_pred             EEEeCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CCe-EEEEEeeccCCceEEEECCEEEEC
Confidence            355677774   6899999999999999999999999998752 333 33432   334  36899998853

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=97.94  E-value=9.5e-06  Score=92.53  Aligned_cols=43  Identities=28%  Similarity=0.441  Sum_probs=40.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s   63 (486)
                      ..+||+|||||.+||+||.+|++.|++|+++|+++.+||....
T Consensus       162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~  204 (985)
T TIGR01372       162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLS  204 (985)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence            4689999999999999999999999999999999999997754

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=97.94  E-value=8.7e-06  Score=82.75  Aligned_cols=37  Identities=19%  Similarity=0.363  Sum_probs=34.7

Q ss_pred             cEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCCCCC
Q 011414           24 DLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSH   60 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~GG~   60 (486)
                      ||||||||++||++|.+|+++  |++|+++|+.+..||.
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~   39 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN   39 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc
Confidence            899999999999999999987  9999999999988764

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PRK07395 L-aspartate oxidase; Provisional

Probab=97.94  E-value=8.8e-06  Score=86.97  Aligned_cols=42  Identities=24%  Similarity=0.333  Sum_probs=37.2

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (486)
Q Consensus        18 ~~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (486)
                      +...++||||||+|++||+||+.++ .|.+|+|+||.+..||.
T Consensus         5 ~~~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~   46 (553)
T PRK07395          5 ILPSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSA   46 (553)
T ss_pred             cccccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCc
Confidence            3456789999999999999999986 59999999999988874

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.94  E-value=8.7e-06  Score=85.66  Aligned_cols=52  Identities=12%  Similarity=0.180  Sum_probs=42.2

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~  332 (486)
                      .++.+.+.+..+..|.++++++.|++|..+  ++....|++.+|+++.+|.||+
T Consensus       231 ~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~--~~~~~~v~~~~g~~i~~D~vl~  282 (486)
T TIGR01423       231 STLRKELTKQLRANGINIMTNENPAKVTLN--ADGSKHVTFESGKTLDVDVVMM  282 (486)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEEc--CCceEEEEEcCCCEEEcCEEEE
Confidence            577888888899999999999999999764  2333456677888999999885

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK02106 choline dehydrogenase; Validated

Probab=97.93  E-value=9.2e-06  Score=87.30  Aligned_cols=38  Identities=29%  Similarity=0.418  Sum_probs=34.6

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhh-CCCcEEEEccCCC
Q 011414           19 EPTAFDLIVIGTGLPESVISAAASA-SGKSVLHLDPNPF   56 (486)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~-~G~~VlvlE~~~~   56 (486)
                      +..+||+||||+|.+|+++|.+|++ +|++|+|||+...
T Consensus         2 ~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~   40 (560)
T PRK02106          2 TTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP   40 (560)
T ss_pred             CCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence            3456999999999999999999999 8999999999854

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=97.93  E-value=1.1e-05  Score=86.83  Aligned_cols=45  Identities=22%  Similarity=0.401  Sum_probs=40.9

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s   63 (486)
                      ...++||||||+|.+|++||..++++|++|+||||++.+||.+..
T Consensus         9 ~~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~   53 (581)
T PRK06134          9 PDLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTAW   53 (581)
T ss_pred             CCCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCccccc
Confidence            345799999999999999999999999999999999999997653

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=97.93  E-value=1e-05  Score=91.90  Aligned_cols=44  Identities=14%  Similarity=0.101  Sum_probs=40.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s   63 (486)
                      .+..+|+|||+|.+||+||..|++.|++|+|+|+.+.+||..+.
T Consensus       428 ~~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~  471 (1006)
T PRK12775        428 KKLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQY  471 (1006)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeec
Confidence            35679999999999999999999999999999999999997653

>PRK06175 L-aspartate oxidase; Provisional

Probab=97.93  E-value=9.1e-06  Score=84.38  Aligned_cols=58  Identities=10%  Similarity=0.168  Sum_probs=43.3

Q ss_pred             eecCCc-chHHHHHHHHHHH-cCcEEEeCCceeEEEEecCCCeEEEEE-eCCCc--EEEcCEEEE
Q 011414          273 YPIYGQ-GELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVR-LASGQ--DILSHKLVL  332 (486)
Q Consensus       273 ~p~gG~-~~L~qal~r~~~~-~Gg~i~l~~~V~~I~~~~~~g~~~gV~-~~~G~--~i~A~~VI~  332 (486)
                      ++.... .++.++|.+.++. .|.+|+++++|.+|..+  +++++||. ..+|+  .++|+.||+
T Consensus       121 ~~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~--~~~v~Gv~~~~~g~~~~i~Ak~VIL  183 (433)
T PRK06175        121 HFKDNTGKKVEKILLKKVKKRKNITIIENCYLVDIIEN--DNTCIGAICLKDNKQINIYSKVTIL  183 (433)
T ss_pred             ecCCCChHHHHHHHHHHHHhcCCCEEEECcEeeeeEec--CCEEEEEEEEECCcEEEEEcCeEEE
Confidence            444444 3688888877765 59999999999999876  67888865 33554  589999885

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=97.93  E-value=1.1e-05  Score=80.17  Aligned_cols=39  Identities=15%  Similarity=0.217  Sum_probs=34.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (486)
                      +-+|||||||++||++|+.|+|.|++|+|+|++.-+=|.
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~   40 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGE   40 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccC
Confidence            358999999999999999999999999999998765333

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=97.93  E-value=9.5e-06  Score=87.96  Aligned_cols=41  Identities=20%  Similarity=0.169  Sum_probs=37.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (486)
                      .++||||||+|++||.||..++++|.+|+|+||....||.+
T Consensus        49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~s   89 (635)
T PLN00128         49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHT   89 (635)
T ss_pred             eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCch
Confidence            46899999999999999999999999999999998877743

>PRK07588 hypothetical protein; Provisional

Probab=97.91  E-value=9.7e-06  Score=83.12  Aligned_cols=34  Identities=12%  Similarity=0.252  Sum_probs=31.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      .||+|||||++||++|+.|++.|++|+|+|+++.
T Consensus         1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~   34 (391)
T PRK07588          1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE   34 (391)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence            3899999999999999999999999999999864

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.91  E-value=1.1e-05  Score=87.76  Aligned_cols=40  Identities=28%  Similarity=0.298  Sum_probs=36.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (486)
                      .++||||||+|.+||+||+.++++|.+|+|+||+..+|+.
T Consensus        34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~~g   73 (640)
T PRK07573         34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRRA   73 (640)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCCcc
Confidence            4689999999999999999999999999999998888644

>PLN02546 glutathione reductase

Probab=97.91  E-value=1.1e-05  Score=86.11  Aligned_cols=45  Identities=27%  Similarity=0.148  Sum_probs=39.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccC---------CCCCCCcccc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN---------PFYGSHFSSL   64 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~---------~~~GG~~~s~   64 (486)
                      ..+|||||||+|.+|..||..+++.|++|+++|++         ..+||-|-..
T Consensus        77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~  130 (558)
T PLN02546         77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLR  130 (558)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCc
Confidence            34699999999999999999999999999999972         5689977654

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=97.90  E-value=1.2e-05  Score=85.41  Aligned_cols=41  Identities=17%  Similarity=0.340  Sum_probs=37.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (486)
                      ...|||+|||||.+|++||.+|++.|++|+++|++  +||.+.
T Consensus       209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~  249 (517)
T PRK15317        209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVL  249 (517)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeee
Confidence            45699999999999999999999999999999874  999875

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=97.89  E-value=1.2e-05  Score=81.95  Aligned_cols=34  Identities=32%  Similarity=0.553  Sum_probs=32.7

Q ss_pred             cEEEECCChhHHHHHHHH--hhCCCcEEEEccCCCC
Q 011414           24 DLIVIGTGLPESVISAAA--SASGKSVLHLDPNPFY   57 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~L--a~~G~~VlvlE~~~~~   57 (486)
                      ||||||||++||++|.+|  ++.|++|+++|++...
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~   36 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP   36 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence            899999999999999999  8889999999999887

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.89  E-value=1e-05  Score=87.04  Aligned_cols=58  Identities=16%  Similarity=0.224  Sum_probs=45.4

Q ss_pred             eecCCc-chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEe---CCCc--EEEcCEEEE
Q 011414          273 YPIYGQ-GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (486)
Q Consensus       273 ~p~gG~-~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~--~i~A~~VI~  332 (486)
                      ++..++ ..|.++|.+.+...|.+++.++.|.++..+  +|+++||..   .+|+  .++|+.||+
T Consensus       128 ~~~~~tG~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~--~g~v~Gv~~~~~~~g~~~~i~AkaVVl  191 (575)
T PRK05945        128 YAADKTGHAILHELVNNLRRYGVTIYDEWYVMRLILE--DNQAKGVVMYHIADGRLEVVRAKAVMF  191 (575)
T ss_pred             ecCCCChHHHHHHHHHHHhhCCCEEEeCcEEEEEEEE--CCEEEEEEEEEcCCCeEEEEECCEEEE
Confidence            443333 478899999888899999999999999876  788888753   4564  579999985

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=97.89  E-value=1.2e-05  Score=87.59  Aligned_cols=52  Identities=17%  Similarity=0.187  Sum_probs=42.7

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEe---CCCc--EEEcCEEEE
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~--~i~A~~VI~  332 (486)
                      ..|..+|.+.+...|.+|+.++.|.+|+.+  +|+++||..   .+|+  .+.|+.||+
T Consensus       158 ~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~--~g~v~Gv~~~~~~~G~~~~i~AkaVVL  214 (657)
T PRK08626        158 HTMLYAVDNEAIKLGVPVHDRKEAIALIHD--GKRCYGAVVRCLITGELRAYVAKATLI  214 (657)
T ss_pred             HHHHHHHHHHHHhCCCEEEeeEEEEEEEEE--CCEEEEEEEEEcCCCcEEEEEcCeEEE
Confidence            478888888888899999999999999987  788888765   3565  368999884

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=97.89  E-value=1.5e-05  Score=83.80  Aligned_cols=43  Identities=16%  Similarity=0.235  Sum_probs=39.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (486)
                      ....||+|||+|.+||+||..|++.|++|+++|+.+.+||...
T Consensus       141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~  183 (471)
T PRK12810        141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLR  183 (471)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceee
Confidence            3567999999999999999999999999999999999999754

>PRK05868 hypothetical protein; Validated

Probab=97.87  E-value=1.5e-05  Score=81.26  Aligned_cols=35  Identities=17%  Similarity=0.205  Sum_probs=32.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (486)
                      .||+|||||++||++|..|+++|++|+|+|+++..
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~   36 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL   36 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence            48999999999999999999999999999998764

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.87  E-value=1.4e-05  Score=86.11  Aligned_cols=43  Identities=26%  Similarity=0.345  Sum_probs=38.2

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCC---CcEEEEccCCCCCCCc
Q 011414           19 EPTAFDLIVIGTGLPESVISAAASASG---KSVLHLDPNPFYGSHF   61 (486)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G---~~VlvlE~~~~~GG~~   61 (486)
                      +..++||||||+|.+||+||..++++|   .+|+|+||....||.+
T Consensus         2 ~~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s   47 (577)
T PRK06069          2 EVLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHS   47 (577)
T ss_pred             CceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCc
Confidence            335689999999999999999999998   8999999999877743

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=97.87  E-value=1.2e-05  Score=85.21  Aligned_cols=40  Identities=18%  Similarity=0.209  Sum_probs=35.5

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s   63 (486)
                      .|+|||||.+||++|..|.+.|.+|+++||++.+||.|+.
T Consensus         3 rVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~   42 (531)
T PF00743_consen    3 RVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRY   42 (531)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCH
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCee
Confidence            6999999999999999999999999999999999999974

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>TIGR02462 pyranose_ox pyranose oxidase

Probab=97.86  E-value=1.4e-05  Score=84.27  Aligned_cols=39  Identities=13%  Similarity=0.158  Sum_probs=37.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCc
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (486)
                      |||||||+|.+|+++|..|+++|++|+++|++...||.+
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~   39 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLK   39 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCc
Confidence            699999999999999999999999999999999999866

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PLN02815 L-aspartate oxidase

Probab=97.86  E-value=1.4e-05  Score=85.87  Aligned_cols=39  Identities=23%  Similarity=0.359  Sum_probs=36.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (486)
                      .++||||||+|++||.||+.+++.| +|+||||....||.
T Consensus        28 ~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~   66 (594)
T PLN02815         28 KYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESN   66 (594)
T ss_pred             cccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCc
Confidence            4689999999999999999999999 89999999998884

>PRK10262 thioredoxin reductase; Provisional

Probab=97.85  E-value=1.5e-05  Score=79.42  Aligned_cols=42  Identities=12%  Similarity=0.198  Sum_probs=37.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s   63 (486)
                      ..+||+|||||.+||.||..|++.|++|+++|+. ..||.+..
T Consensus         5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~   46 (321)
T PRK10262          5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTT   46 (321)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceec
Confidence            5689999999999999999999999999999965 67887644

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=97.85  E-value=1.9e-05  Score=87.78  Aligned_cols=43  Identities=16%  Similarity=0.195  Sum_probs=40.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (486)
                      .+..||+|||+|.+||+||..|++.|++|+|+|+++.+||...
T Consensus       429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~  471 (752)
T PRK12778        429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK  471 (752)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence            3567999999999999999999999999999999999999865

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=97.84  E-value=1.6e-05  Score=80.85  Aligned_cols=37  Identities=24%  Similarity=0.240  Sum_probs=34.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      .||+|||||++|+.||..|++.|++|+++|+++...-
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s   39 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKT   39 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCc
Confidence            4999999999999999999999999999999876643

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=97.84  E-value=1.6e-05  Score=85.67  Aligned_cols=51  Identities=20%  Similarity=0.326  Sum_probs=42.4

Q ss_pred             hHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEe---CCCc--EEEcCEEEE
Q 011414          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (486)
Q Consensus       280 ~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~--~i~A~~VI~  332 (486)
                      .|.++|.+.+...|.+++.++.|++|..+  +|+++||..   .+|+  .++|+.||+
T Consensus       130 ~i~~~L~~~~~~~gv~i~~~~~v~~L~~~--~g~v~Gv~~~~~~~g~~~~i~Ak~VVl  185 (566)
T TIGR01812       130 ALLHTLYEQCLKLGVSFFNEYFALDLIHD--DGRVRGVVAYDLKTGEIVFFRAKAVVL  185 (566)
T ss_pred             HHHHHHHHHHHHcCCEEEeccEEEEEEEe--CCEEEEEEEEECCCCcEEEEECCeEEE
Confidence            68888888888889999999999999887  788888764   3565  579999884

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.84  E-value=1.7e-05  Score=85.84  Aligned_cols=44  Identities=18%  Similarity=0.310  Sum_probs=39.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccC-CCCCCCcccc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPN-PFYGSHFSSL   64 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~-~~~GG~~~s~   64 (486)
                      .+|||||||+|.+|..||..+++.|++|+++|+. +.+||-|-..
T Consensus       115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~  159 (659)
T PTZ00153        115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNV  159 (659)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEe
Confidence            3799999999999999999999999999999984 5799977543

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=97.82  E-value=2.7e-05  Score=83.94  Aligned_cols=42  Identities=29%  Similarity=0.470  Sum_probs=39.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (486)
                      .++||||||+|.+|++||..++++|++|+|||+++..||.+.
T Consensus        15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~   56 (578)
T PRK12843         15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTA   56 (578)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCccc
Confidence            468999999999999999999999999999999999999765

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=97.82  E-value=1.9e-05  Score=82.76  Aligned_cols=42  Identities=10%  Similarity=0.110  Sum_probs=37.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCCCCCcc
Q 011414           21 TAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~GG~~~   62 (486)
                      ..+||||||||+.|+++|+.|++.  |++|+||||.+.+|-..+
T Consensus         5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a~~sS   48 (497)
T PRK13339          5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAIESS   48 (497)
T ss_pred             ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcchhcC
Confidence            567999999999999999999999  999999999778776554

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=97.82  E-value=2.5e-05  Score=81.89  Aligned_cols=43  Identities=26%  Similarity=0.393  Sum_probs=40.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (486)
                      .+..+|+|||+|.+||++|..|++.|++|+++|+++.+||..+
T Consensus       139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~  181 (467)
T TIGR01318       139 PTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLT  181 (467)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence            3567999999999999999999999999999999999999765

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=97.82  E-value=1.8e-05  Score=85.93  Aligned_cols=45  Identities=18%  Similarity=0.295  Sum_probs=37.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhh-CCCcEEEEccCCCC--CCCcccc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASA-SGKSVLHLDPNPFY--GSHFSSL   64 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~-~G~~VlvlE~~~~~--GG~~~s~   64 (486)
                      ++++||+|||||++||++|+.|++ .|.+|+|+|+++..  .|++..+
T Consensus        30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl   77 (634)
T PRK08294         30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGI   77 (634)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEE
Confidence            467999999999999999999999 59999999998643  4555433

>PRK06475 salicylate hydroxylase; Provisional

Probab=97.82  E-value=1.8e-05  Score=81.44  Aligned_cols=35  Identities=14%  Similarity=0.154  Sum_probs=32.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (486)
                      -+|+|||||++||++|..|+++|++|+|+|+++.+
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~   37 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL   37 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence            58999999999999999999999999999998654

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.81  E-value=2.1e-05  Score=83.62  Aligned_cols=41  Identities=17%  Similarity=0.302  Sum_probs=37.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (486)
                      ...|||+|||||.+|++||.+|++.|++|+++|.  ++||.+.
T Consensus       210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~  250 (515)
T TIGR03140       210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVK  250 (515)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccc
Confidence            4569999999999999999999999999999985  6899765

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=97.81  E-value=1.8e-05  Score=80.82  Aligned_cols=38  Identities=24%  Similarity=0.221  Sum_probs=34.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCc
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (486)
                      ||+|||||++|+.||..|++.|++|+++|+++..|-..
T Consensus         2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~p~   39 (433)
T TIGR00137         2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLTPA   39 (433)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccCch
Confidence            89999999999999999999999999999988876533

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PLN02852 ferredoxin-NADP+ reductase

Probab=97.80  E-value=2.5e-05  Score=81.60  Aligned_cols=43  Identities=16%  Similarity=0.133  Sum_probs=39.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhh--CCCcEEEEccCCCCCCCccc
Q 011414           21 TAFDLIVIGTGLPESVISAAASA--SGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~--~G~~VlvlE~~~~~GG~~~s   63 (486)
                      ...+|+|||+|.+|+.||..|++  .|++|+|+|+.+.+||..+.
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~   69 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRS   69 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEee
Confidence            45689999999999999999987  79999999999999998875

>TIGR00551 nadB L-aspartate oxidase

Probab=97.80  E-value=2.1e-05  Score=83.02  Aligned_cols=52  Identities=17%  Similarity=0.228  Sum_probs=41.7

Q ss_pred             chHHHHHHHHHHH-cCcEEEeCCceeEEEEecCCCeEEEEEeCC-C--cEEEcCEEEE
Q 011414          279 GELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVRLAS-G--QDILSHKLVL  332 (486)
Q Consensus       279 ~~L~qal~r~~~~-~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~-G--~~i~A~~VI~  332 (486)
                      ..|.++|.+.+.. .|.+++.++.|++|..+  ++++++|...+ +  ..++|+.||+
T Consensus       128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~--~g~v~Gv~~~~~~~~~~i~A~~VVl  183 (488)
T TIGR00551       128 REVITTLVKKALNHPNIRIIEGENALDLLIE--TGRVVGVWVWNRETVETCHADAVVL  183 (488)
T ss_pred             HHHHHHHHHHHHhcCCcEEEECeEeeeeecc--CCEEEEEEEEECCcEEEEEcCEEEE
Confidence            4788999888877 68999999999999876  67788876543 3  3689999884

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=97.80  E-value=2.6e-05  Score=85.14  Aligned_cols=42  Identities=19%  Similarity=0.228  Sum_probs=39.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (486)
                      ...+|+|||+|.+||+||..|++.|++|+++|+++++||.+.
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~  233 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR  233 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence            457999999999999999999999999999999999999864

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=97.79  E-value=3e-05  Score=81.22  Aligned_cols=43  Identities=19%  Similarity=0.204  Sum_probs=39.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (486)
                      ....+|+|||+|.+||.+|..|++.|++|+++|+++++||...
T Consensus       138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~  180 (457)
T PRK11749        138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLR  180 (457)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEee
Confidence            3457999999999999999999999999999999999999754

>PRK06996 hypothetical protein; Provisional

Probab=97.79  E-value=2.1e-05  Score=80.90  Aligned_cols=39  Identities=15%  Similarity=0.289  Sum_probs=34.5

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCC----CcEEEEccCCC
Q 011414           18 IEPTAFDLIVIGTGLPESVISAAASASG----KSVLHLDPNPF   56 (486)
Q Consensus        18 ~~~~~~DViIIGaGl~GL~aA~~La~~G----~~VlvlE~~~~   56 (486)
                      +.+..+||+|||||++|+++|+.|+++|    ++|+++|+.+.
T Consensus         7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~   49 (398)
T PRK06996          7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREP   49 (398)
T ss_pred             ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCC
Confidence            4556799999999999999999999997    47999999764

>PRK08071 L-aspartate oxidase; Provisional

Probab=97.79  E-value=2.2e-05  Score=83.20  Aligned_cols=40  Identities=18%  Similarity=0.294  Sum_probs=36.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (486)
                      .++||||||+|.+||.||..+++ |.+|+|+||....||.+
T Consensus         2 ~~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s   41 (510)
T PRK08071          2 PSADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNS   41 (510)
T ss_pred             CccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCc
Confidence            36899999999999999999976 99999999999887753

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=97.78  E-value=1.8e-05  Score=79.62  Aligned_cols=51  Identities=24%  Similarity=0.395  Sum_probs=38.5

Q ss_pred             hHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE
Q 011414          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (486)
Q Consensus       280 ~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~  332 (486)
                      .+.+.+.+.++..+..-+....|+.|..+  +++++||++.+|+.+.|+.||+
T Consensus        96 ~y~~~~~~~l~~~~nl~i~~~~V~~l~~e--~~~v~GV~~~~g~~~~a~~vVl  146 (392)
T PF01134_consen   96 KYSRAMREKLESHPNLTIIQGEVTDLIVE--NGKVKGVVTKDGEEIEADAVVL  146 (392)
T ss_dssp             HHHHHHHHHHHTSTTEEEEES-EEEEEEC--TTEEEEEEETTSEEEEECEEEE
T ss_pred             HHHHHHHHHHhcCCCeEEEEcccceEEec--CCeEEEEEeCCCCEEecCEEEE
Confidence            34455555566666666678899999887  7889999999999999999885

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=97.77  E-value=2.4e-05  Score=84.69  Aligned_cols=39  Identities=21%  Similarity=0.253  Sum_probs=35.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCCCC
Q 011414           21 TAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGS   59 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~GG   59 (486)
                      .++||||||+|.+||.||+.++++  |.+|+|+||+...|+
T Consensus        10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s   50 (608)
T PRK06854         10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRS   50 (608)
T ss_pred             eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCC
Confidence            468999999999999999999998  999999999987544

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=97.77  E-value=2.3e-05  Score=84.42  Aligned_cols=35  Identities=26%  Similarity=0.347  Sum_probs=33.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ...+|+|||||++||++|.+|++.|++|+|+||+.
T Consensus        80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~  114 (668)
T PLN02927         80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL  114 (668)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence            45899999999999999999999999999999975

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=97.76  E-value=0.00092  Score=67.92  Aligned_cols=61  Identities=13%  Similarity=0.176  Sum_probs=46.6

Q ss_pred             eEeecCCc----chHHHHHHHHHHHc-CcEEEeCCceeEEEEecCCCeEEEEEeC-----CCcEEEcCEEEEC
Q 011414          271 LIYPIYGQ----GELPQAFCRRAAVK-GCLYVLRMPVISLLTDQNSGSYKGVRLA-----SGQDILSHKLVLD  333 (486)
Q Consensus       271 ~~~p~gG~----~~L~qal~r~~~~~-Gg~i~l~~~V~~I~~~~~~g~~~gV~~~-----~G~~i~A~~VI~~  333 (486)
                      ..+...|+    |+|.+.|.+.+... |.+++++++|+.|.... +|+ +.|++.     +.++++|+.|+++
T Consensus       169 at~~~~GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~-dg~-W~v~~~~~~~~~~~~v~a~FVfvG  239 (488)
T PF06039_consen  169 ATRVEEGTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNG-DGR-WEVKVKDLKTGEKREVRAKFVFVG  239 (488)
T ss_pred             eeecCCCccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECC-CCC-EEEEEEecCCCCeEEEECCEEEEC
Confidence            34666775    89999999988887 99999999999999873 453 455432     2357899999875

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=97.75  E-value=2.5e-05  Score=75.22  Aligned_cols=40  Identities=20%  Similarity=0.282  Sum_probs=34.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhh----CCCcEEEEccCCCCCCC
Q 011414           21 TAFDLIVIGTGLPESVISAAASA----SGKSVLHLDPNPFYGSH   60 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~----~G~~VlvlE~~~~~GG~   60 (486)
                      .++||+|||+|..|++.|..|.+    .|.+|+|+|+++.|--.
T Consensus        85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqs  128 (509)
T KOG2853|consen   85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQS  128 (509)
T ss_pred             cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCccccc
Confidence            57899999999999999999853    37999999999987333

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=97.74  E-value=3e-05  Score=80.15  Aligned_cols=36  Identities=17%  Similarity=0.399  Sum_probs=32.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCC-CcEEEEccCCCCCC
Q 011414           24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGS   59 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G-~~VlvlE~~~~~GG   59 (486)
                      +|+|||||++||++|..|+++| .+|+|+||++.++.
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~   38 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGE   38 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCC
Confidence            6999999999999999999998 59999999987653

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=97.73  E-value=3.3e-05  Score=82.04  Aligned_cols=46  Identities=26%  Similarity=0.322  Sum_probs=41.4

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        18 ~~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s   63 (486)
                      ++..++||||||+|.+||.||..++.+|.+|+++||....||++..
T Consensus         2 ~~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~   47 (562)
T COG1053           2 MTIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVA   47 (562)
T ss_pred             cccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchhh
Confidence            4567899999999999999999999999999999999999866543

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=97.73  E-value=3e-05  Score=83.50  Aligned_cols=41  Identities=22%  Similarity=0.152  Sum_probs=36.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCCCCCc
Q 011414           21 TAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHF   61 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~GG~~   61 (486)
                      .++||||||+|++||.||+.++++  |.+|+|+||....||.+
T Consensus         3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s   45 (582)
T PRK09231          3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHT   45 (582)
T ss_pred             eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCh
Confidence            468999999999999999999987  47999999998877743

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.71  E-value=3.2e-05  Score=82.80  Aligned_cols=53  Identities=15%  Similarity=0.207  Sum_probs=41.7

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEe---CCCc--EEEcCEEEE
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~--~i~A~~VI~  332 (486)
                      .++.+.|.+.+...|.++++++.|+++..++ +++++||..   .+|+  .++|+.||+
T Consensus       134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~-~~~v~Gv~~~~~~~g~~~~i~AkaVIl  191 (543)
T PRK06263        134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDE-NREVIGAIFLDLRNGEIFPIYAKATIL  191 (543)
T ss_pred             HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeC-CcEEEEEEEEECCCCcEEEEEcCcEEE
Confidence            4788888888888999999999999998872 344888753   4564  489999885

>PRK08275 putative oxidoreductase; Provisional

Probab=97.71  E-value=3.2e-05  Score=82.97  Aligned_cols=53  Identities=23%  Similarity=0.322  Sum_probs=42.6

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEe---CCCc--EEEcCEEEE
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~--~i~A~~VI~  332 (486)
                      .++.+.|.+.++..|.+|+.++.|.+|..++ +|+++||..   .+|+  .++|+.||+
T Consensus       137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VIl  194 (554)
T PRK08275        137 HDIKKVLYRQLKRARVLITNRIMATRLLTDA-DGRVAGALGFDCRTGEFLVIRAKAVIL  194 (554)
T ss_pred             HHHHHHHHHHHHHCCCEEEcceEEEEEEEcC-CCeEEEEEEEecCCCcEEEEECCEEEE
Confidence            4788999998888999999999999998752 577888763   3565  478999884

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.71  E-value=3.5e-05  Score=81.18  Aligned_cols=42  Identities=31%  Similarity=0.358  Sum_probs=37.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCC--------CCCCCccc
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP--------FYGSHFSS   63 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~--------~~GG~~~s   63 (486)
                      +||+||||+|.+|+.||..+++.|++|+++|+..        .+||.|-.
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n   51 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVN   51 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccc
Confidence            5899999999999999999999999999999742        58887654

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=97.71  E-value=3.2e-05  Score=74.30  Aligned_cols=56  Identities=18%  Similarity=0.153  Sum_probs=46.7

Q ss_pred             hHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcE--EEcCEEE-ECCCCC
Q 011414          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQD--ILSHKLV-LDPSFT  337 (486)
Q Consensus       280 ~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~--i~A~~VI-~~p~~~  337 (486)
                      .+-++|.+..+..||.++.+-+|.+....  +|++..|.+.++..  ++|+.+| ++.++.
T Consensus       259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~--~~~v~~i~trn~~diP~~a~~~VLAsGsff  317 (421)
T COG3075         259 RLHNQLQRQFEQLGGLWMPGDEVKKATCK--GGRVTEIYTRNHADIPLRADFYVLASGSFF  317 (421)
T ss_pred             hHHHHHHHHHHHcCceEecCCceeeeeee--CCeEEEEEecccccCCCChhHeeeeccccc
Confidence            67889999999999999999999999887  88888998888776  5788776 455543

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=97.70  E-value=3.8e-05  Score=78.91  Aligned_cols=51  Identities=18%  Similarity=0.137  Sum_probs=42.1

Q ss_pred             hHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCc--EEEcCEEEE
Q 011414          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ--DILSHKLVL  332 (486)
Q Consensus       280 ~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~--~i~A~~VI~  332 (486)
                      ++.++|.+.++..|+++++++.|.++..+  ++++..|...+|+  .++||.||+
T Consensus       260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~--~~~V~~v~~~~g~~~~i~AD~VVL  312 (422)
T PRK05329        260 RLQNALRRAFERLGGRIMPGDEVLGAEFE--GGRVTAVWTRNHGDIPLRARHFVL  312 (422)
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEe--CCEEEEEEeeCCceEEEECCEEEE
Confidence            79999999999999999999999999876  5666666555564  489999885

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.70  E-value=3.9e-05  Score=82.73  Aligned_cols=53  Identities=19%  Similarity=0.273  Sum_probs=42.8

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCC---CeEEEEEe---CCCc--EEEcCEEEE
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNS---GSYKGVRL---ASGQ--DILSHKLVL  332 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~---g~~~gV~~---~~G~--~i~A~~VI~  332 (486)
                      ..|.++|.+.+...|.+++.++.|.+|..++ +   |+++||..   .+|+  .++|+.||+
T Consensus       140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~-~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVL  200 (583)
T PRK08205        140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTE-TPSGPVAAGVVAYELATGEIHVFHAKAVVF  200 (583)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEecC-CccCCcEEEEEEEEcCCCeEEEEEeCeEEE
Confidence            4788999998888999999999999998762 2   78888864   3565  478999885

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=97.69  E-value=3.3e-05  Score=76.30  Aligned_cols=57  Identities=14%  Similarity=0.229  Sum_probs=44.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhh----C--CCcEEEEccCCCCCCCccccc------hhh-hhhhhhcCC
Q 011414           21 TAFDLIVIGTGLPESVISAAASA----S--GKSVLHLDPNPFYGSHFSSLS------IAD-LTHFLNSHS   77 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~----~--G~~VlvlE~~~~~GG~~~s~~------~~~-~~~~~~~~~   77 (486)
                      +.+||+|||||.+||+||++|.+    +  -.+|+|+|+...+||+.-|-.      +++ +++|-.++.
T Consensus        75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~a  144 (621)
T KOG2415|consen   75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGA  144 (621)
T ss_pred             ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCC
Confidence            57999999999999999999843    3  458999999999999987653      223 356766643

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=97.68  E-value=0.0012  Score=66.67  Aligned_cols=56  Identities=18%  Similarity=0.229  Sum_probs=49.3

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEECCCC
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSF  336 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~p~~  336 (486)
                      -.+.+.|.+.+..+|++|+.++.|+.|+..  ++.+.+|++++|.+|.||+||+.|-.
T Consensus       173 ~~vvkni~~~l~~~G~ei~f~t~VeDi~~~--~~~~~~v~~~~g~~i~~~~vvlA~Gr  228 (486)
T COG2509         173 PKVVKNIREYLESLGGEIRFNTEVEDIEIE--DNEVLGVKLTKGEEIEADYVVLAPGR  228 (486)
T ss_pred             HHHHHHHHHHHHhcCcEEEeeeEEEEEEec--CCceEEEEccCCcEEecCEEEEccCc
Confidence            467788888999999999999999999987  66678899999999999999976553

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=97.67  E-value=3.9e-05  Score=82.49  Aligned_cols=40  Identities=25%  Similarity=0.175  Sum_probs=36.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCCCCCc
Q 011414           22 AFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHF   61 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~GG~~   61 (486)
                      ++||||||+|++||.||..++++  |.+|+|+||....||.+
T Consensus         3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s   44 (580)
T TIGR01176         3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHT   44 (580)
T ss_pred             ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCc
Confidence            58999999999999999999987  58999999999888744

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK09077 L-aspartate oxidase; Provisional

Probab=97.67  E-value=4.5e-05  Score=81.47  Aligned_cols=40  Identities=18%  Similarity=0.338  Sum_probs=36.2

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (486)
                      +.++||||||+|.+||.||+.+++. .+|+|+||....||.
T Consensus         6 ~~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~   45 (536)
T PRK09077          6 EHQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGS   45 (536)
T ss_pred             cccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCC
Confidence            3568999999999999999999986 899999999988874

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=97.66  E-value=6.3e-05  Score=79.30  Aligned_cols=42  Identities=17%  Similarity=0.259  Sum_probs=39.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (486)
                      ...+|+|||+|++|+.+|..|++.|++|+++|+.+++||...
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~  183 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLM  183 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence            346999999999999999999999999999999999999764

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK08401 L-aspartate oxidase; Provisional

Probab=97.66  E-value=4.5e-05  Score=80.03  Aligned_cols=50  Identities=18%  Similarity=0.199  Sum_probs=41.4

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~  332 (486)
                      ..+.++|.+.+...|.+++.+ .|+.+..+  ++++++|.. +|+.++|+.||+
T Consensus       120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~--~g~v~Gv~~-~g~~i~a~~VVL  169 (466)
T PRK08401        120 KHIIKILYKHARELGVNFIRG-FAEELAIK--NGKAYGVFL-DGELLKFDATVI  169 (466)
T ss_pred             HHHHHHHHHHHHhcCCEEEEe-EeEEEEee--CCEEEEEEE-CCEEEEeCeEEE
Confidence            478999999999999999876 78888765  678888875 677899999885

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=97.62  E-value=5.4e-05  Score=80.72  Aligned_cols=36  Identities=33%  Similarity=0.562  Sum_probs=33.5

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 011414           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (486)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (486)
                      +..+||+||||+|.+|+++|..|++.|++|++||+.
T Consensus         4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG   39 (542)
T COG2303           4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAG   39 (542)
T ss_pred             ccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCC
Confidence            346799999999999999999999999999999995

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.59  E-value=6.8e-05  Score=68.98  Aligned_cols=33  Identities=24%  Similarity=0.419  Sum_probs=30.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      ||||||||.+|+.||..|++.|++|+++|+++.
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~   33 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG   33 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence            799999999999999999999999999987654

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.58  E-value=9.3e-05  Score=79.66  Aligned_cols=42  Identities=21%  Similarity=0.263  Sum_probs=38.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (486)
                      ...+|+|||+|.+||++|..|++.|++|+|+|+++.+||..+
T Consensus       136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~  177 (564)
T PRK12771        136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMR  177 (564)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence            446899999999999999999999999999999999999764

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.57  E-value=7.1e-05  Score=78.46  Aligned_cols=39  Identities=31%  Similarity=0.443  Sum_probs=35.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s   63 (486)
                      +|||||+|.+|++||.+|++.|++|+++|++. +||.|-.
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~-~GG~c~n   40 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD-LGGTCLN   40 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc-ccccCCC
Confidence            79999999999999999999999999999974 7877654

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=97.54  E-value=8.8e-05  Score=81.01  Aligned_cols=56  Identities=18%  Similarity=0.177  Sum_probs=48.0

Q ss_pred             CCCCCCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414            7 ESELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus         7 ~~~~~~~~~~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s   63 (486)
                      |.-|-+|--| ...+-..|.|||+|.+||+||..|-|+|+.|+|+||.||+||....
T Consensus      1771 ~egwm~p~pp-~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~y 1826 (2142)
T KOG0399|consen 1771 EEGWMKPCPP-AFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMY 1826 (2142)
T ss_pred             HhcCCccCCc-ccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeee
Confidence            3456666544 4667789999999999999999999999999999999999998764

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=97.54  E-value=0.00011  Score=74.36  Aligned_cols=41  Identities=20%  Similarity=0.182  Sum_probs=38.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (486)
                      ..+|+|||+|.+|+.+|..|++.|++|+++|+.+++||...
T Consensus        18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~   58 (352)
T PRK12770         18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLML   58 (352)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceee
Confidence            46899999999999999999999999999999999999764

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=97.52  E-value=0.00012  Score=75.88  Aligned_cols=48  Identities=21%  Similarity=0.216  Sum_probs=42.8

Q ss_pred             CCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414           16 PPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        16 ~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s   63 (486)
                      ++-..+...|.|||+|.+||+||..|+++|+.|+++|+.+..||+...
T Consensus       117 ~~~~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~y  164 (457)
T COG0493         117 LPGSRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLY  164 (457)
T ss_pred             CCCCCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEe
Confidence            333445579999999999999999999999999999999999999875

>PLN02785 Protein HOTHEAD

Probab=97.52  E-value=0.0001  Score=79.18  Aligned_cols=36  Identities=33%  Similarity=0.457  Sum_probs=32.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      ...||+||||+|.+|+++|.+|++ +++|+|||+...
T Consensus        53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~   88 (587)
T PLN02785         53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV   88 (587)
T ss_pred             cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence            346999999999999999999999 699999999753

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.51  E-value=0.00015  Score=56.31  Aligned_cols=35  Identities=23%  Similarity=0.292  Sum_probs=33.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (486)
                      .|+|||+|..|+-+|..|++.|.+|+++|+++++.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~   35 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL   35 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence            38999999999999999999999999999999987

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=97.51  E-value=0.00013  Score=80.75  Aligned_cols=41  Identities=24%  Similarity=0.269  Sum_probs=37.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (486)
                      .+...|+|||+|.+||+||++|++.|++|+++|+.+..|+.
T Consensus       381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~  421 (1028)
T PRK06567        381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLP  421 (1028)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccc
Confidence            46679999999999999999999999999999998877665

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=97.50  E-value=8.5e-05  Score=72.77  Aligned_cols=50  Identities=18%  Similarity=0.301  Sum_probs=44.0

Q ss_pred             CCCCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcccc
Q 011414           14 PYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (486)
Q Consensus        14 ~~~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~   64 (486)
                      .|.+.. .+|||+|||+|.+|-.||...++.|.+...+|++..+||-|-..
T Consensus        32 ~fa~~~-~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnv   81 (506)
T KOG1335|consen   32 SFASSA-NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNV   81 (506)
T ss_pred             hhhccC-ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeec
Confidence            355533 57999999999999999999999999999999999999987653

>TIGR00136 gidA glucose-inhibited division protein A

Probab=97.47  E-value=0.00012  Score=77.60  Aligned_cols=38  Identities=34%  Similarity=0.330  Sum_probs=34.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (486)
                      |||||||+|++|+.||..+++.|++|+++|++...+|.
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~   38 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGK   38 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccC
Confidence            79999999999999999999999999999998544443

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>TIGR01810 betA choline dehydrogenase

Probab=97.47  E-value=9.2e-05  Score=79.12  Aligned_cols=33  Identities=36%  Similarity=0.449  Sum_probs=31.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCC-CcEEEEccCCC
Q 011414           24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNPF   56 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G-~~VlvlE~~~~   56 (486)
                      |+||||+|.+|+++|.+|+++| ++|+|||+...
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~   34 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS   34 (532)
T ss_pred             CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence            8999999999999999999998 79999999754

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>PTZ00188 adrenodoxin reductase; Provisional

Probab=97.47  E-value=0.00015  Score=75.02  Aligned_cols=44  Identities=14%  Similarity=0.027  Sum_probs=38.8

Q ss_pred             CcccEEEECCChhHHHHHHHH-hhCCCcEEEEccCCCCCCCcccc
Q 011414           21 TAFDLIVIGTGLPESVISAAA-SASGKSVLHLDPNPFYGSHFSSL   64 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~L-a~~G~~VlvlE~~~~~GG~~~s~   64 (486)
                      ....|+|||+|.+|+.||.+| ++.|++|.++|+.+.+||..+.-
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~G   82 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYG   82 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEe
Confidence            446799999999999999975 56799999999999999998753

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=97.47  E-value=0.00012  Score=78.96  Aligned_cols=34  Identities=18%  Similarity=0.351  Sum_probs=31.8

Q ss_pred             cEEEECCChhHHHHHHHHh----hCCCcEEEEccCCCC
Q 011414           24 DLIVIGTGLPESVISAAAS----ASGKSVLHLDPNPFY   57 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La----~~G~~VlvlE~~~~~   57 (486)
                      ||||||+|.+||.||+.++    ++|.+|+|+||....
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~   38 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLE   38 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCC
Confidence            8999999999999999998    789999999998863

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PRK07846 mycothione reductase; Reviewed

Probab=97.44  E-value=0.00013  Score=76.35  Aligned_cols=40  Identities=25%  Similarity=0.487  Sum_probs=33.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcccc
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~   64 (486)
                      +||+||||+|.+|..||.+  ..|++|+++|+ +.+||-|-.+
T Consensus         1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~-~~~GGtC~n~   40 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDER--FADKRIAIVEK-GTFGGTCLNV   40 (451)
T ss_pred             CCCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCcccCc
Confidence            4899999999999988866  46999999998 4689977654

>TIGR03452 mycothione_red mycothione reductase

Probab=97.42  E-value=0.00013  Score=76.22  Aligned_cols=40  Identities=25%  Similarity=0.444  Sum_probs=34.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcccc
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~   64 (486)
                      +|||||||+|.+|..||++  .+|++|+++|+ +.+||.|-.+
T Consensus         2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~-~~~GGtC~n~   41 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEK-GTFGGTCLNV   41 (452)
T ss_pred             CcCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCeeecc
Confidence            5999999999999998654  46999999998 5789988654

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK07512 L-aspartate oxidase; Provisional

Probab=97.42  E-value=0.00014  Score=77.33  Aligned_cols=52  Identities=21%  Similarity=0.252  Sum_probs=41.7

Q ss_pred             chHHHHHHHHHHHc-CcEEEeCCceeEEEEecCCCeEEEEEeCC-Cc--EEEcCEEEE
Q 011414          279 GELPQAFCRRAAVK-GCLYVLRMPVISLLTDQNSGSYKGVRLAS-GQ--DILSHKLVL  332 (486)
Q Consensus       279 ~~L~qal~r~~~~~-Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~-G~--~i~A~~VI~  332 (486)
                      ..+.++|.+.+... |.+++.+++|.+|..+  +|+++||...+ ++  .++|+.||+
T Consensus       136 ~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~~~~i~Ak~VVL  191 (513)
T PRK07512        136 AAIMRALIAAVRATPSITVLEGAEARRLLVD--DGAVAGVLAATAGGPVVLPARAVVL  191 (513)
T ss_pred             HHHHHHHHHHHHhCCCCEEEECcChhheeec--CCEEEEEEEEeCCeEEEEECCEEEE
Confidence            47889998888765 8999999999999776  78888887643 33  589999884

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=97.41  E-value=0.00018  Score=81.54  Aligned_cols=36  Identities=28%  Similarity=0.446  Sum_probs=34.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      .++||||||+|.+||.||..+++.|.+|+|+||...
T Consensus        12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~   47 (897)
T PRK13800         12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV   47 (897)
T ss_pred             eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence            468999999999999999999999999999999885

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=97.41  E-value=0.00013  Score=79.00  Aligned_cols=36  Identities=25%  Similarity=0.246  Sum_probs=33.2

Q ss_pred             EEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414           25 LIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (486)
Q Consensus        25 ViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (486)
                      |||||+|.+||+||+.++++|.+|+|+||+..+||.
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~~g   36 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRRA   36 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCCCc
Confidence            799999999999999999999999999999977543

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK13984 putative oxidoreductase; Provisional

Probab=97.39  E-value=0.0002  Score=77.83  Aligned_cols=43  Identities=12%  Similarity=0.100  Sum_probs=39.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (486)
                      ....+|+|||+|.+|+++|..|++.|++|+|+|+++..||...
T Consensus       281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~  323 (604)
T PRK13984        281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR  323 (604)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe
Confidence            3567899999999999999999999999999999999999754

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.38  E-value=0.00018  Score=75.49  Aligned_cols=52  Identities=13%  Similarity=0.147  Sum_probs=41.5

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~  333 (486)
                      .++.+.+.+..+..|.++++++.|++|..+  ++. +.|.+.+|+++.+|.||+.
T Consensus       218 ~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~--~~~-~~v~~~~g~~l~~D~vl~a  269 (466)
T PRK07845        218 ADAAEVLEEVFARRGMTVLKRSRAESVERT--GDG-VVVTLTDGRTVEGSHALMA  269 (466)
T ss_pred             HHHHHHHHHHHHHCCcEEEcCCEEEEEEEe--CCE-EEEEECCCcEEEecEEEEe
Confidence            467777888888999999999999999765  343 3466778999999998853

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=97.34  E-value=0.00018  Score=80.03  Aligned_cols=34  Identities=18%  Similarity=0.231  Sum_probs=32.1

Q ss_pred             cEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCC
Q 011414           24 DLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFY   57 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~   57 (486)
                      +|+|||||++||++|..|++.  |++|+|+|+++..
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~   37 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPY   37 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCC
Confidence            799999999999999999998  8999999999863

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=97.23  E-value=0.00026  Score=72.79  Aligned_cols=35  Identities=37%  Similarity=0.519  Sum_probs=31.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (486)
                      +..|||||||||++|+-||.+.||.|.+++++=-|
T Consensus         2 ~~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~   36 (621)
T COG0445           2 PKEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLN   36 (621)
T ss_pred             CCCCceEEECCCccchHHHHhhhccCCeEEEEEcC
Confidence            45699999999999999999999999999988653

>COG4716 Myosin-crossreactive antigen [Function unknown]

Probab=97.21  E-value=0.003  Score=62.01  Aligned_cols=44  Identities=18%  Similarity=0.294  Sum_probs=37.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhC----CCcEEEEccCCCCCCCcccc
Q 011414           21 TAFDLIVIGTGLPESVISAAASAS----GKSVLHLDPNPFYGSHFSSL   64 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~----G~~VlvlE~~~~~GG~~~s~   64 (486)
                      .+..+-|||+|++||++|+.|-|.    |.++.++|--+..||..-.-
T Consensus        21 dqKsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG~   68 (587)
T COG4716          21 DQKSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDGA   68 (587)
T ss_pred             ccceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCCCC
Confidence            345799999999999999999664    78999999999999976543

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=97.12  E-value=0.00035  Score=66.86  Aligned_cols=46  Identities=24%  Similarity=0.310  Sum_probs=39.1

Q ss_pred             CCCCCcccEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCCCCCcc
Q 011414           17 PIEPTAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        17 ~~~~~~~DViIIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~GG~~~   62 (486)
                      +.+...||.||||+|+.||+.|..|.-+  +.+|.|||+...++=..+
T Consensus        43 s~s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqS   90 (453)
T KOG2665|consen   43 SISKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQS   90 (453)
T ss_pred             ccccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeec
Confidence            5666789999999999999999999877  999999999876654333

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=96.95  E-value=0.0011  Score=69.89  Aligned_cols=39  Identities=31%  Similarity=0.374  Sum_probs=34.8

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhC-CCcEEEEccCCCC
Q 011414           19 EPTAFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFY   57 (486)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~-G~~VlvlE~~~~~   57 (486)
                      ....||.||||||-+|++.|++|++. ..+||+||+....
T Consensus        54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~   93 (623)
T KOG1238|consen   54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP   93 (623)
T ss_pred             cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence            44689999999999999999999998 7999999996554

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=96.90  E-value=0.00097  Score=67.25  Aligned_cols=47  Identities=30%  Similarity=0.473  Sum_probs=37.0

Q ss_pred             CCCCCCC--CCCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 011414            8 SELPVPP--YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (486)
Q Consensus         8 ~~~~~~~--~~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (486)
                      ...|+|.  .-+-..+.|||||||||++|+-||++.||-|-+.++|-.|
T Consensus        12 ~s~~~~Rr~~~~s~~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~   60 (679)
T KOG2311|consen   12 TSFPLPRRCVFSSSTSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN   60 (679)
T ss_pred             ccCcchhhhhcccCCCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence            4566663  2222356899999999999999999999999998887654

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=96.86  E-value=0.001  Score=67.75  Aligned_cols=33  Identities=27%  Similarity=0.416  Sum_probs=31.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (486)
                      ||+|||+|++||++|..|++. ++|+|+=|...-
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~   41 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLG   41 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCC
Confidence            999999999999999999999 999999998765

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=96.84  E-value=0.0013  Score=63.23  Aligned_cols=39  Identities=26%  Similarity=0.296  Sum_probs=36.5

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (486)
                      -|||||+|++||+|+..+-..|-.|++||++...||...
T Consensus        11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSi   49 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSI   49 (477)
T ss_pred             cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcce
Confidence            699999999999999999999888999999999999754

>PRK09897 hypothetical protein; Provisional

Probab=96.83  E-value=0.0013  Score=69.83  Aligned_cols=38  Identities=11%  Similarity=0.058  Sum_probs=34.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCC--CcEEEEccCCCCC-CC
Q 011414           23 FDLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYG-SH   60 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G--~~VlvlE~~~~~G-G~   60 (486)
                      ++|+|||+|.+|+++|..|.+.+  .+|+|+|++..+| |.
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~   42 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGM   42 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcce
Confidence            58999999999999999998865  4899999999999 65

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=96.79  E-value=0.0016  Score=67.02  Aligned_cols=51  Identities=12%  Similarity=0.214  Sum_probs=40.1

Q ss_pred             hHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEECC
Q 011414          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP  334 (486)
Q Consensus       280 ~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~p  334 (486)
                      ++.+.+.+.++..|.++++++.|++|..   ++. +.|++.+|+++.||.||+..
T Consensus       187 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~---~~~-~~v~l~~g~~i~aD~Vv~a~  237 (396)
T PRK09754        187 PVQRYLLQRHQQAGVRILLNNAIEHVVD---GEK-VELTLQSGETLQADVVIYGI  237 (396)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCeeEEEEc---CCE-EEEEECCCCEEECCEEEECC
Confidence            5556677778889999999999999854   222 45778899999999999643

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=96.73  E-value=0.0013  Score=63.52  Aligned_cols=33  Identities=36%  Similarity=0.419  Sum_probs=31.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEcc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDP   53 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~   53 (486)
                      -+||.||||+|-+||+||-..++-|++|.+||-
T Consensus        18 ydyDLIviGgGSgGLacaKeAa~~G~kV~~lDf   50 (503)
T KOG4716|consen   18 YDYDLIVIGGGSGGLACAKEAADLGAKVACLDF   50 (503)
T ss_pred             CCccEEEEcCCcchhhHHHHHHhcCCcEEEEee
Confidence            579999999999999999999999999999996

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=96.72  E-value=0.00051  Score=62.08  Aligned_cols=41  Identities=12%  Similarity=0.147  Sum_probs=36.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCCCCCcc
Q 011414           22 AFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~GG~~~   62 (486)
                      +-||||||+|-+||+||+..+++  ..+|.++|+.-.+||-++
T Consensus        76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaW  118 (328)
T KOG2960|consen   76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAW  118 (328)
T ss_pred             ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCccc
Confidence            35999999999999999999855  789999999999988544

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=96.63  E-value=0.0018  Score=67.56  Aligned_cols=51  Identities=16%  Similarity=0.155  Sum_probs=39.7

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~  333 (486)
                      .++.+.+.+.++..|.++++++.|++|..   +++...|.+ +++++.||.||+.
T Consensus       191 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~---~~~~~~v~~-~~~~i~~d~vi~a  241 (444)
T PRK09564        191 KEITDVMEEELRENGVELHLNEFVKSLIG---EDKVEGVVT-DKGEYEADVVIVA  241 (444)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEec---CCcEEEEEe-CCCEEEcCEEEEC
Confidence            46778888888999999999999999953   344455654 5567999998864

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=96.58  E-value=0.0026  Score=65.99  Aligned_cols=48  Identities=23%  Similarity=0.147  Sum_probs=39.2

Q ss_pred             hHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEECC
Q 011414          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP  334 (486)
Q Consensus       280 ~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~p  334 (486)
                      ++.+.+.+.++..|.++++++.|++|.    .+   .|.+++|+++.||.||..+
T Consensus       229 ~~~~~~~~~L~~~gV~v~~~~~v~~v~----~~---~v~~~~g~~i~~d~vi~~~  276 (424)
T PTZ00318        229 ALRKYGQRRLRRLGVDIRTKTAVKEVL----DK---EVVLKDGEVIPTGLVVWST  276 (424)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCeEEEEe----CC---EEEECCCCEEEccEEEEcc
Confidence            577777788899999999999999884    22   3567899999999988643

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=96.44  E-value=0.003  Score=64.75  Aligned_cols=40  Identities=25%  Similarity=0.354  Sum_probs=38.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (486)
                      .+|+|||+|..||.+|..|++.|++|+++|+++++||...
T Consensus       137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~  176 (415)
T COG0446         137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL  176 (415)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhh
Confidence            6899999999999999999999999999999999999876

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=96.39  E-value=0.0036  Score=65.22  Aligned_cols=48  Identities=13%  Similarity=0.132  Sum_probs=38.6

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~  333 (486)
                      .++.+.+.+.++..|.++++++.|++|.    ..   .|++++|+++.+|.||..
T Consensus       189 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~----~~---~v~~~~g~~~~~D~vl~a  236 (438)
T PRK13512        189 ADMNQPILDELDKREIPYRLNEEIDAIN----GN---EVTFKSGKVEHYDMIIEG  236 (438)
T ss_pred             HHHHHHHHHHHHhcCCEEEECCeEEEEe----CC---EEEECCCCEEEeCEEEEC
Confidence            4677788888889999999999999984    22   355678889999998854

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=96.26  E-value=0.015  Score=57.86  Aligned_cols=60  Identities=18%  Similarity=0.243  Sum_probs=50.5

Q ss_pred             eEeecCCc---chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC
Q 011414          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (486)
Q Consensus       271 ~~~p~gG~---~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~  333 (486)
                      ++.|.+|.   ..+.+++.+.+.+.|++++.+++|+.|..+  ++++++|.+.+| +++||+||+.
T Consensus       126 ~~~~~~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~--~~~~~~v~~~~g-~~~a~~vV~a  188 (337)
T TIGR02352       126 VFYPDDAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIR--GEKVTAIVTPSG-DVQADQVVLA  188 (337)
T ss_pred             EEcCCCceEChHHHHHHHHHHHHHcCCEEEccceEEEEEee--CCEEEEEEcCCC-EEECCEEEEc
Confidence            55677774   689999999999999999999999999876  677778887666 8999998853

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.25  E-value=0.005  Score=59.98  Aligned_cols=44  Identities=23%  Similarity=0.260  Sum_probs=40.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcccc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~   64 (486)
                      .+||..|||+|-+|+.+|.+.+..|.+|.++|..-.+||-|-..
T Consensus        19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~   62 (478)
T KOG0405|consen   19 KDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNV   62 (478)
T ss_pred             cccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEee
Confidence            58999999999999999999999999999999999999987543

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=96.23  E-value=0.0046  Score=59.81  Aligned_cols=40  Identities=25%  Similarity=0.320  Sum_probs=35.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCc
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (486)
                      ..-|.|||||++|+-||..++++|.+|.+.|-++.=+--+
T Consensus         3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~Tpa   42 (439)
T COG1206           3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKGTPA   42 (439)
T ss_pred             CCceEEEcccccccHHHHHHHHcCCcEEEEEcccccCCCc
Confidence            3458999999999999999999999999999997766443

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=96.22  E-value=0.0052  Score=61.25  Aligned_cols=46  Identities=26%  Similarity=0.476  Sum_probs=36.6

Q ss_pred             CCCCCCCcccEEEECCChhHHHHHHHHhhC----CCcEEEEccC--CCCCCC
Q 011414           15 YPPIEPTAFDLIVIGTGLPESVISAAASAS----GKSVLHLDPN--PFYGSH   60 (486)
Q Consensus        15 ~~~~~~~~~DViIIGaGl~GL~aA~~La~~----G~~VlvlE~~--~~~GG~   60 (486)
                      ..+.+...|||||||||+.|++.|+.|...    -+||+++|..  +..|+.
T Consensus        29 ~~~~~~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~   80 (481)
T KOG3855|consen   29 AKSTDTAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDF   80 (481)
T ss_pred             cccCCcccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCcccccc
Confidence            344455589999999999999999999864    5799999998  444443

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=95.90  E-value=0.0041  Score=63.86  Aligned_cols=39  Identities=21%  Similarity=0.387  Sum_probs=36.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (486)
                      +|||+|||||-.|.-+|.-.+-+|.+|.++|++|+--|-
T Consensus        67 ~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGT  105 (680)
T KOG0042|consen   67 EFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGT  105 (680)
T ss_pred             cccEEEECCCccCcceeehhhcccceeEEEecccccCCc
Confidence            599999999999999999999999999999999986553

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=95.75  E-value=0.011  Score=53.92  Aligned_cols=33  Identities=27%  Similarity=0.384  Sum_probs=27.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      .|.|||.|..||.+|+.||++|++|+-+|.+..
T Consensus         2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~   34 (185)
T PF03721_consen    2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE   34 (185)
T ss_dssp             EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred             EEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence            589999999999999999999999999999864

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=95.54  E-value=0.015  Score=51.43  Aligned_cols=31  Identities=23%  Similarity=0.394  Sum_probs=27.9

Q ss_pred             EEECCChhHHHHHHHHhhC-----CCcEEEEccCCC
Q 011414           26 IVIGTGLPESVISAAASAS-----GKSVLHLDPNPF   56 (486)
Q Consensus        26 iIIGaGl~GL~aA~~La~~-----G~~VlvlE~~~~   56 (486)
                      +|||+|++|++++..|.+.     ..+|+|+|+++.
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~   36 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF   36 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence            5999999999999999887     578999999766

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=95.49  E-value=0.015  Score=58.99  Aligned_cols=49  Identities=18%  Similarity=0.217  Sum_probs=39.5

Q ss_pred             hHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEECCC
Q 011414          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS  335 (486)
Q Consensus       280 ~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~p~  335 (486)
                      ++.+.+.+.++..|.++++++.|++|.    .+   .|.+.+|+++.+|.||+.+.
T Consensus       192 ~~~~~~~~~l~~~gV~v~~~~~v~~i~----~~---~v~~~~g~~i~~D~vi~a~G  240 (364)
T TIGR03169       192 KVRRLVLRLLARRGIEVHEGAPVTRGP----DG---ALILADGRTLPADAILWATG  240 (364)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCeeEEEc----CC---eEEeCCCCEEecCEEEEccC
Confidence            566777788889999999999999873    23   46678899999999996544

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=95.40  E-value=0.019  Score=58.35  Aligned_cols=46  Identities=26%  Similarity=0.357  Sum_probs=37.8

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCc-EEEcCEEE
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ-DILSHKLV  331 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~-~i~A~~VI  331 (486)
                      -++.+...+..+.+|.+++++++|++|.-   +    +|++.+|+ +|.|+.+|
T Consensus       209 ~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~---~----~v~~~~g~~~I~~~tvv  255 (405)
T COG1252         209 PKLSKYAERALEKLGVEVLLGTPVTEVTP---D----GVTLKDGEEEIPADTVV  255 (405)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCceEEECC---C----cEEEccCCeeEecCEEE
Confidence            46777777888999999999999999853   2    46677887 49999999

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=95.19  E-value=0.013  Score=55.70  Aligned_cols=41  Identities=7%  Similarity=0.177  Sum_probs=37.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhCC------CcEEEEccCCCCCCCcc
Q 011414           22 AFDLIVIGTGLPESVISAAASASG------KSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G------~~VlvlE~~~~~GG~~~   62 (486)
                      ...++|||||+.|..+|++|++.+      ..|+++|+....||...
T Consensus        10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSG   56 (380)
T KOG2852|consen   10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASG   56 (380)
T ss_pred             ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccccccc
Confidence            367999999999999999999998      89999999999988654

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=95.14  E-value=0.026  Score=51.20  Aligned_cols=32  Identities=31%  Similarity=0.346  Sum_probs=28.0

Q ss_pred             EEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           25 LIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        25 ViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      |.|||+|..|...|..++++|++|.++|.++.
T Consensus         2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~   33 (180)
T PF02737_consen    2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSPE   33 (180)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred             EEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            78999999999999999999999999999643

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=95.12  E-value=0.024  Score=58.30  Aligned_cols=39  Identities=13%  Similarity=0.131  Sum_probs=35.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCc
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (486)
                      -+|+|||+|..|+-+|..|++.|.+|+++|+.+++.++.
T Consensus       145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~  183 (396)
T PRK09754        145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRN  183 (396)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhh
Confidence            469999999999999999999999999999999887653

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=95.02  E-value=0.031  Score=55.30  Aligned_cols=44  Identities=9%  Similarity=-0.007  Sum_probs=39.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhh--CCCcEEEEccCCCCCCCcccc
Q 011414           21 TAFDLIVIGTGLPESVISAAASA--SGKSVLHLDPNPFYGSHFSSL   64 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~--~G~~VlvlE~~~~~GG~~~s~   64 (486)
                      ....|.|||+|.+|..+|..|-+  .+..|.++|+.+.++|..+.-
T Consensus        19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyG   64 (468)
T KOG1800|consen   19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYG   64 (468)
T ss_pred             CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeec
Confidence            44589999999999999998877  479999999999999998864

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=94.98  E-value=0.059  Score=54.99  Aligned_cols=58  Identities=24%  Similarity=0.254  Sum_probs=48.5

Q ss_pred             eEeecCCc---chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE
Q 011414          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (486)
Q Consensus       271 ~~~p~gG~---~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~  332 (486)
                      +++|..|.   ..+.++|.+.+.. |++++.+++|.+|..+  +++ ++|++.+|..++|++||+
T Consensus       124 l~~~~~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~--~~~-~~v~t~~g~~~~a~~vV~  184 (381)
T TIGR03197       124 LFFPQGGWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERD--GEG-WQLLDANGEVIAASVVVL  184 (381)
T ss_pred             eEeCCCcccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEc--CCe-EEEEeCCCCEEEcCEEEE
Confidence            56787785   6889999998888 9999999999999875  444 678888888899999884

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=94.94  E-value=0.03  Score=49.56  Aligned_cols=32  Identities=22%  Similarity=0.313  Sum_probs=30.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      .|.|||+|-.|.++|..|+++|++|.++.++.
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence            37899999999999999999999999999976

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.82  E-value=0.036  Score=56.82  Aligned_cols=42  Identities=21%  Similarity=0.407  Sum_probs=35.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhC--C-CcEEEEccCCCCCCCccc
Q 011414           22 AFDLIVIGTGLPESVISAAASAS--G-KSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~--G-~~VlvlE~~~~~GG~~~s   63 (486)
                      .++|+|||+|.+|+..|..|.+.  . .+|.|+|++...|+-..-
T Consensus         1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaY   45 (474)
T COG4529           1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAY   45 (474)
T ss_pred             CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccC
Confidence            37899999999999999999765  2 239999999999876543

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=94.75  E-value=0.02  Score=55.93  Aligned_cols=40  Identities=20%  Similarity=0.345  Sum_probs=33.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (486)
                      ..|||+|||+|.+|-+||.+.||.|.+.=++  .+|.||...
T Consensus       210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~--aerfGGQvl  249 (520)
T COG3634         210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLV--AERFGGQVL  249 (520)
T ss_pred             CCceEEEEcCCcchhHHHHHHHhhcchhhhh--hhhhCCeec
Confidence            4599999999999999999999999987654  246788643

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=94.69  E-value=0.022  Score=57.18  Aligned_cols=35  Identities=31%  Similarity=0.418  Sum_probs=27.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCC-CcEEEEccCCC
Q 011414           22 AFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPF   56 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G-~~VlvlE~~~~   56 (486)
                      .+|+|+||.|..+|+.|++|...+ .+++.||+++.
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~   37 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPS   37 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCC
Confidence            589999999999999999999886 99999999764

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=94.66  E-value=0.042  Score=56.01  Aligned_cols=53  Identities=17%  Similarity=0.231  Sum_probs=42.0

Q ss_pred             hHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEECCC
Q 011414          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS  335 (486)
Q Consensus       280 ~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~p~  335 (486)
                      ++.+.+.+.++..|.+++++++|++|..+  ++. +.|.+.+|+++.||.||+...
T Consensus       184 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~--~~~-~~v~~~~g~~i~~D~vI~a~G  236 (377)
T PRK04965        184 EVSSRLQHRLTEMGVHLLLKSQLQGLEKT--DSG-IRATLDSGRSIEVDAVIAAAG  236 (377)
T ss_pred             HHHHHHHHHHHhCCCEEEECCeEEEEEcc--CCE-EEEEEcCCcEEECCEEEECcC
Confidence            46667777888899999999999999764  333 467788999999999996533

>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1

Probab=94.59  E-value=0.2  Score=50.71  Aligned_cols=111  Identities=19%  Similarity=0.183  Sum_probs=67.7

Q ss_pred             cCCcHHHHHHhcCCChHHHHHHHHHHhhccCCchhhhhhhchhhHHHHHHHHHHhhhcccCCCcceEeecCCcchHHHHH
Q 011414          206 LDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAF  285 (486)
Q Consensus       206 ~~~s~~~~l~~~~l~~~l~~~l~~~i~~~~~~~~~~~~~~s~~~~l~~~~~~~~s~g~~g~~~g~~~~p~gG~~~L~qal  285 (486)
                      ...+..+||++.++++...+-+..+....+|.++.   .+      ..+..++...+..   +| .+-++||...|++.|
T Consensus        68 t~~t~~e~L~~~gi~~~fi~Elv~a~tRvNYgQ~~---~i------~a~~G~vSla~a~---~g-l~sV~GGN~qI~~~l  134 (368)
T PF07156_consen   68 TKVTGEEYLKENGISERFINELVQAATRVNYGQNV---NI------HAFAGLVSLAGAT---GG-LWSVEGGNWQIFEGL  134 (368)
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHhheEeeccccc---ch------hhhhhheeeeecc---CC-ceEecCCHHHHHHHH
Confidence            45688999999999988766555555556676632   12      2222222222211   13 457999999999977


Q ss_pred             HHHHHHcCcEEEeCCceeEEEEecCCCe-EEEEEeCC--CcEE-EcCEEEEC
Q 011414          286 CRRAAVKGCLYVLRMPVISLLTDQNSGS-YKGVRLAS--GQDI-LSHKLVLD  333 (486)
Q Consensus       286 ~r~~~~~Gg~i~l~~~V~~I~~~~~~g~-~~gV~~~~--G~~i-~A~~VI~~  333 (486)
                      .+   .-|+++ +++.|++|.....++. ...|...+  +..- ..|.||+.
T Consensus       135 l~---~S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIA  182 (368)
T PF07156_consen  135 LE---ASGANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIA  182 (368)
T ss_pred             HH---HccCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEEC
Confidence            54   578899 9999999943222332 23444332  2222 35998864

8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.56  E-value=0.045  Score=57.73  Aligned_cols=35  Identities=20%  Similarity=0.234  Sum_probs=32.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      ...|+|||+|.+|+.+|..|++.|++|.++|+++.
T Consensus        16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~   50 (480)
T PRK01438         16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD   50 (480)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            34799999999999999999999999999998764

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=94.54  E-value=0.05  Score=54.00  Aligned_cols=37  Identities=22%  Similarity=0.207  Sum_probs=32.9

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      +++...|.|||+|.-|...|.+|+++|++|+++.+++
T Consensus         2 ~~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~   38 (313)
T PRK06249          2 DSETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD   38 (313)
T ss_pred             CCcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            3455679999999999999999999999999999864

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=94.50  E-value=0.045  Score=55.77  Aligned_cols=38  Identities=21%  Similarity=0.293  Sum_probs=34.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (486)
                      .+|+|||+|..|+-+|..|++.|++|+++|+.+++...
T Consensus       142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~  179 (377)
T PRK04965        142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLAS  179 (377)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccch
Confidence            46999999999999999999999999999999887543

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=94.29  E-value=0.044  Score=54.22  Aligned_cols=33  Identities=24%  Similarity=0.398  Sum_probs=31.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      +|.|||+|+-|...|..|+++|++|+++|++..
T Consensus         4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~   36 (308)
T PRK06129          4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA   36 (308)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence            699999999999999999999999999999864

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=94.28  E-value=0.059  Score=56.14  Aligned_cols=38  Identities=21%  Similarity=0.102  Sum_probs=34.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (486)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+.+++.+.
T Consensus       158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~  195 (438)
T PRK07251        158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR  195 (438)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC
Confidence            36999999999999999999999999999999987554

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.24  E-value=0.049  Score=57.08  Aligned_cols=34  Identities=26%  Similarity=0.132  Sum_probs=31.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (486)
                      .|.|||.|.+|+++|..|++.|++|++.|++...
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~   35 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP   35 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence            3899999999999999999999999999998765

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=94.17  E-value=0.064  Score=46.83  Aligned_cols=31  Identities=26%  Similarity=0.503  Sum_probs=29.0

Q ss_pred             EEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           25 LIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        25 ViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      |.|+|+|-.|+..|++|+++|++|.++.++.
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence            6899999999999999999999999999853

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=94.16  E-value=0.054  Score=57.01  Aligned_cols=37  Identities=14%  Similarity=0.134  Sum_probs=34.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~  217 (472)
T PRK05976        181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILP  217 (472)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCC
Confidence            4799999999999999999999999999999987643

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=94.04  E-value=0.063  Score=56.32  Aligned_cols=37  Identities=16%  Similarity=0.148  Sum_probs=34.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      .+|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~  207 (461)
T TIGR01350       171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILP  207 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCC
Confidence            4799999999999999999999999999999988754

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=93.90  E-value=0.17  Score=53.91  Aligned_cols=59  Identities=22%  Similarity=0.289  Sum_probs=47.4

Q ss_pred             eEeecCCc---chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeC---CCc--EEEcCEEEE
Q 011414          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SGQ--DILSHKLVL  332 (486)
Q Consensus       271 ~~~p~gG~---~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~---~G~--~i~A~~VI~  332 (486)
                      +.+| .|.   ..+..++.+.+..+|++|+.+++|++|..+  ++++++|++.   +|+  +|+|+.||.
T Consensus       118 ~~~~-dg~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~--~~~v~gv~v~~~~~g~~~~i~a~~VVn  184 (516)
T TIGR03377       118 VKVP-DGTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIRE--GGRVTGVKVEDHKTGEEERIEAQVVIN  184 (516)
T ss_pred             EEeC-CcEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEE--CCEEEEEEEEEcCCCcEEEEEcCEEEE
Confidence            6677 453   578899999999999999999999999886  6777777753   343  689999884

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=93.75  E-value=0.078  Score=59.68  Aligned_cols=54  Identities=13%  Similarity=0.184  Sum_probs=42.3

Q ss_pred             hHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEECC
Q 011414          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP  334 (486)
Q Consensus       280 ~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~p  334 (486)
                      +..+.+.+.++..|.++++++.|++|..+. ++....|.+++|+++.||.||+.+
T Consensus       188 ~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~-~~~~~~v~~~dG~~i~~D~Vv~A~  241 (847)
T PRK14989        188 MGGEQLRRKIESMGVRVHTSKNTLEIVQEG-VEARKTMRFADGSELEVDFIVFST  241 (847)
T ss_pred             HHHHHHHHHHHHCCCEEEcCCeEEEEEecC-CCceEEEEECCCCEEEcCEEEECC
Confidence            445667788889999999999999996531 234557888999999999999643

>TIGR02053 MerA mercuric reductase

Probab=93.73  E-value=0.075  Score=55.81  Aligned_cols=38  Identities=24%  Similarity=0.163  Sum_probs=34.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (486)
                      -+|+|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus       167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~  204 (463)
T TIGR02053       167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR  204 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc
Confidence            47999999999999999999999999999999887543

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=93.73  E-value=4.5  Score=41.17  Aligned_cols=49  Identities=27%  Similarity=0.251  Sum_probs=39.1

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEE
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV  331 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI  331 (486)
                      ..+-+.+.+.+. .++++++++.|++|..+  ++ .+.|++++|++++|+.||
T Consensus        87 ~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~--~~-~~~v~~~~g~~i~a~~Vv  135 (374)
T PF05834_consen   87 ADFYEFLLERAA-AGGVIRLNARVTSIEET--GD-GVLVVLADGRTIRARVVV  135 (374)
T ss_pred             HHHHHHHHHHhh-hCCeEEEccEEEEEEec--Cc-eEEEEECCCCEEEeeEEE
Confidence            456677777777 77889999999999875  33 356778999999999998

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=93.69  E-value=0.39  Score=48.76  Aligned_cols=57  Identities=23%  Similarity=0.359  Sum_probs=46.4

Q ss_pred             eEeecCC-cchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCC-cEEEcCEEEE
Q 011414          271 LIYPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG-QDILSHKLVL  332 (486)
Q Consensus       271 ~~~p~gG-~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G-~~i~A~~VI~  332 (486)
                      .+||.-. ..++.++|.+.++..|.+|+++++|++|  +  +++ ..|++.++ +.++||+||+
T Consensus        77 rvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~--~~~-~~v~~~~~~~~~~a~~vIl  135 (376)
T TIGR03862        77 RVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--Q--GGT-LRFETPDGQSTIEADAVVL  135 (376)
T ss_pred             EECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--e--CCc-EEEEECCCceEEecCEEEE
Confidence            5799665 6899999999999999999999999999  3  333 56776543 5699999884

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>PRK06370 mercuric reductase; Validated

Probab=93.69  E-value=0.084  Score=55.42  Aligned_cols=38  Identities=18%  Similarity=0.210  Sum_probs=35.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (486)
                      -+|+|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus       172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~  209 (463)
T PRK06370        172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR  209 (463)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc
Confidence            47999999999999999999999999999999987654

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.59  E-value=0.094  Score=54.82  Aligned_cols=36  Identities=17%  Similarity=0.290  Sum_probs=32.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      +....|+|+|+|..|+.+|..|++.|++|+++|+++
T Consensus         3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          3 LKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            345679999999999999999999999999999975

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=93.57  E-value=0.078  Score=54.79  Aligned_cols=34  Identities=29%  Similarity=0.283  Sum_probs=31.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      ..|.|||.|..|+..|..|+++|++|.++|++..
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~   37 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH   37 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence            4699999999999999999999999999998764

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=93.53  E-value=0.087  Score=55.11  Aligned_cols=37  Identities=8%  Similarity=0.086  Sum_probs=34.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      -.|+|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~  203 (450)
T TIGR01421       167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR  203 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCc
Confidence            4799999999999999999999999999999988753

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.50  E-value=0.09  Score=51.44  Aligned_cols=33  Identities=24%  Similarity=0.241  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ..|.|||+|.-|...|..|+++|++|.++|.++
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~   36 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD   36 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            359999999999999999999999999999875

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.47  E-value=0.077  Score=51.95  Aligned_cols=33  Identities=24%  Similarity=0.284  Sum_probs=30.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      .|.|||+|.-|...|..|+++|++|+++|+++.
T Consensus         3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~   35 (288)
T PRK09260          3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE   35 (288)
T ss_pred             EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence            489999999999999999999999999999854

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=93.43  E-value=0.092  Score=55.27  Aligned_cols=38  Identities=16%  Similarity=0.082  Sum_probs=34.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (486)
                      -+++|||+|..|+-.|..|++.|.+|+++|+.+++...
T Consensus       175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~  212 (471)
T PRK06467        175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA  212 (471)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc
Confidence            47999999999999999999999999999999987543

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=93.41  E-value=0.092  Score=55.09  Aligned_cols=38  Identities=24%  Similarity=0.242  Sum_probs=34.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (486)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+++++...
T Consensus       173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~  210 (462)
T PRK06416        173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG  210 (462)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc
Confidence            46999999999999999999999999999999887543

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=93.39  E-value=0.091  Score=54.77  Aligned_cols=37  Identities=11%  Similarity=0.067  Sum_probs=34.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      -.|+|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus       149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~  185 (438)
T PRK13512        149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINK  185 (438)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccch
Confidence            3699999999999999999999999999999988754

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=93.36  E-value=0.097  Score=54.91  Aligned_cols=37  Identities=19%  Similarity=0.259  Sum_probs=34.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      -+++|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~  207 (458)
T PRK06912        171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLP  207 (458)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCc
Confidence            4799999999999999999999999999999988754

>PRK07846 mycothione reductase; Reviewed

Probab=93.36  E-value=0.096  Score=54.80  Aligned_cols=36  Identities=19%  Similarity=0.204  Sum_probs=33.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (486)
                      -+++|||+|..|+-+|..|++.|.+|+++|+.+++.
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll  202 (451)
T PRK07846        167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL  202 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc
Confidence            479999999999999999999999999999998875

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=93.31  E-value=0.097  Score=55.01  Aligned_cols=37  Identities=11%  Similarity=0.011  Sum_probs=33.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~  209 (466)
T PRK07818        173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALP  209 (466)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCC
Confidence            3799999999999999999999999999999887644

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=93.29  E-value=0.11  Score=54.57  Aligned_cols=37  Identities=24%  Similarity=0.170  Sum_probs=34.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      -.|+|||+|..|+-.|..|++.|.+|+++|+++++..
T Consensus       170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~  206 (460)
T PRK06292        170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP  206 (460)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc
Confidence            4799999999999999999999999999999998765

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=93.27  E-value=0.089  Score=52.66  Aligned_cols=32  Identities=31%  Similarity=0.438  Sum_probs=30.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      .+.|||+|..||+.|+.||+.|++|+.+|...
T Consensus         2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~   33 (414)
T COG1004           2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDE   33 (414)
T ss_pred             ceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence            58899999999999999999999999999864

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=93.26  E-value=0.1  Score=54.81  Aligned_cols=37  Identities=19%  Similarity=0.150  Sum_probs=34.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      -.|+|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus       175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~  211 (466)
T PRK06115        175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICP  211 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCC
Confidence            4699999999999999999999999999999988754

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=93.18  E-value=0.087  Score=59.06  Aligned_cols=53  Identities=13%  Similarity=0.290  Sum_probs=42.0

Q ss_pred             hHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEECCC
Q 011414          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS  335 (486)
Q Consensus       280 ~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~p~  335 (486)
                      ++.+.+.+..+..|.++++++.|++|..   +++..+|++++|+++.||.||+.+.
T Consensus       183 ~~~~~l~~~l~~~GV~v~~~~~v~~i~~---~~~~~~v~~~dG~~i~~D~Vi~a~G  235 (785)
T TIGR02374       183 TAGRLLQRELEQKGLTFLLEKDTVEIVG---ATKADRIRFKDGSSLEADLIVMAAG  235 (785)
T ss_pred             HHHHHHHHHHHHcCCEEEeCCceEEEEc---CCceEEEEECCCCEEEcCEEEECCC
Confidence            3455666778899999999999999864   3455678889999999999996443

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.18  E-value=0.12  Score=50.60  Aligned_cols=33  Identities=27%  Similarity=0.264  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ..|.|||+|.-|...|..|+++|++|.++|++.
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA   37 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            469999999999999999999999999999874

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.14  E-value=0.11  Score=50.77  Aligned_cols=34  Identities=21%  Similarity=0.289  Sum_probs=31.5

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (486)
                      .|.|||+|.-|.-.|..|+++|++|+++|.++.-
T Consensus         7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~   40 (286)
T PRK07819          7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEEL   40 (286)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence            6899999999999999999999999999998653

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=93.12  E-value=0.11  Score=53.93  Aligned_cols=36  Identities=19%  Similarity=0.233  Sum_probs=33.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (486)
                      -.|+|||+|..|+-+|..|++.|.+|+++++.+++.
T Consensus       138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~  173 (427)
T TIGR03385       138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERIL  173 (427)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccC
Confidence            479999999999999999999999999999998773

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=93.08  E-value=0.13  Score=54.07  Aligned_cols=38  Identities=21%  Similarity=0.197  Sum_probs=34.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (486)
                      -.|+|||+|..|+-.|..|++.|.+|+++|+++++...
T Consensus       176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~  213 (461)
T PRK05249        176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF  213 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc
Confidence            47999999999999999999999999999999987653

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=93.01  E-value=0.11  Score=48.83  Aligned_cols=33  Identities=24%  Similarity=0.433  Sum_probs=31.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      +++|||+|--|...|..|++.|+.|+++|+++.
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~   34 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE   34 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence            689999999999999999999999999999753

>PRK04148 hypothetical protein; Provisional

Probab=92.88  E-value=0.095  Score=44.70  Aligned_cols=33  Identities=21%  Similarity=0.234  Sum_probs=30.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      ..+++||.| .|...|..|++.|++|+.+|.++.
T Consensus        18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~   50 (134)
T PRK04148         18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK   50 (134)
T ss_pred             CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence            469999999 888889999999999999999877

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.71  E-value=0.12  Score=51.15  Aligned_cols=33  Identities=36%  Similarity=0.424  Sum_probs=30.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      .|.|||+|.-|..-|..++++|++|.++|.++.
T Consensus         9 ~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~   41 (321)
T PRK07066          9 TFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG   41 (321)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            599999999999999999999999999999763

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.68  E-value=0.13  Score=50.09  Aligned_cols=33  Identities=24%  Similarity=0.321  Sum_probs=30.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      .|.|||+|..|...|..|+++|++|+++|.++.
T Consensus         5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~   37 (282)
T PRK05808          5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA   37 (282)
T ss_pred             EEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence            699999999999999999999999999998754

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=92.67  E-value=0.15  Score=53.71  Aligned_cols=38  Identities=24%  Similarity=0.269  Sum_probs=34.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (486)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+++++...
T Consensus       184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~  221 (475)
T PRK06327        184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA  221 (475)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc
Confidence            47999999999999999999999999999999887543

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=92.66  E-value=0.31  Score=44.56  Aligned_cols=52  Identities=21%  Similarity=0.161  Sum_probs=39.9

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~  333 (486)
                      .++.+-|.+.++.+|..+++++.|++|..+  +++ +.|++.+|++++|++||+.
T Consensus        82 ~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~--~~~-w~v~~~~~~~~~a~~VVlA  133 (203)
T PF13738_consen   82 EEVLDYLQEYAERFGLEIRFNTRVESVRRD--GDG-WTVTTRDGRTIRADRVVLA  133 (203)
T ss_dssp             HHHHHHHHHHHHHTTGGEETS--EEEEEEE--TTT-EEEEETTS-EEEEEEEEE-
T ss_pred             HHHHHHHHHHHhhcCcccccCCEEEEEEEe--ccE-EEEEEEecceeeeeeEEEe
Confidence            456677777788889889999999999988  444 7899999989999999953

...

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=92.61  E-value=0.13  Score=57.73  Aligned_cols=37  Identities=22%  Similarity=0.145  Sum_probs=33.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      -.|+|||+|+.|+-+|..|++.|.+|+++|+.+++-.
T Consensus       141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~  177 (785)
T TIGR02374       141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMA  177 (785)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhh
Confidence            3699999999999999999999999999999887643

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=92.52  E-value=0.099  Score=50.49  Aligned_cols=43  Identities=26%  Similarity=0.407  Sum_probs=38.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccC--------CCCCCCccccc
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN--------PFYGSHFSSLS   65 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~--------~~~GG~~~s~~   65 (486)
                      -+|+|||+|..|.-||.-..--|-+|+++|.|        +.+||+..+..
T Consensus       169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~  219 (371)
T COG0686         169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLY  219 (371)
T ss_pred             ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEE
Confidence            57999999999999999999999999999999        66788877653

>TIGR03452 mycothione_red mycothione reductase

Probab=92.50  E-value=0.15  Score=53.27  Aligned_cols=37  Identities=19%  Similarity=0.207  Sum_probs=34.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      -.++|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus       170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~  206 (452)
T TIGR03452       170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLR  206 (452)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccc
Confidence            4799999999999999999999999999999988754

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=92.39  E-value=0.41  Score=50.56  Aligned_cols=41  Identities=15%  Similarity=0.214  Sum_probs=36.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCCCCCccc
Q 011414           23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~GG~~~s   63 (486)
                      +||||||||+.|+++|+.|++.  |++|+||||.+.+|...+.
T Consensus         1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a~~~S~   43 (483)
T TIGR01320         1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAVAAESSN   43 (483)
T ss_pred             CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcchhhhCC
Confidence            6999999999999999999997  9999999998877754443

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=92.38  E-value=0.3  Score=50.34  Aligned_cols=36  Identities=33%  Similarity=0.577  Sum_probs=33.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      ||||||+|++||+||+.++++|.+|+|+||.+.+||
T Consensus         1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg   36 (417)
T PF00890_consen    1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGG   36 (417)
T ss_dssp             SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGS
T ss_pred             CEEEECCCHHHHHHHHHHhhhcCeEEEEEeeccccc
Confidence            899999999999999999999999999999999999

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=92.36  E-value=0.37  Score=50.98  Aligned_cols=63  Identities=17%  Similarity=0.205  Sum_probs=46.0

Q ss_pred             cceEeecCCc---chHHHHHHHHHHHcC-cEEEeCCceeEEEEecCCCeEEEEEe---CCCc--EEEcCEEEEC
Q 011414          269 GALIYPIYGQ---GELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVLD  333 (486)
Q Consensus       269 g~~~~p~gG~---~~L~qal~r~~~~~G-g~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~--~i~A~~VI~~  333 (486)
                      ++.+.|.+|.   +.+.++|.+.++..| ++++++++|++|..+. +++ +.|.+   .+|+  +++|++||+.
T Consensus       170 ~Al~~p~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~-dg~-~~v~~~~~~~G~~~~i~A~~VVva  241 (494)
T PRK05257        170 AATRIEIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRND-DGS-WTVTVKDLKTGEKRTVRAKFVFIG  241 (494)
T ss_pred             eEEEcCCceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECC-CCC-EEEEEEEcCCCceEEEEcCEEEEC
Confidence            3456677773   689999999998887 5999999999998752 443 33433   3464  6899998843

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=92.28  E-value=0.21  Score=52.48  Aligned_cols=39  Identities=21%  Similarity=0.196  Sum_probs=35.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCc
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (486)
                      -.++|||+|..|+-.|..|++.|.+|+++|+.+++....
T Consensus       178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~  216 (466)
T PRK07845        178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGE  216 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCC
Confidence            369999999999999999999999999999998876653

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=92.22  E-value=0.15  Score=54.27  Aligned_cols=36  Identities=19%  Similarity=0.084  Sum_probs=33.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (486)
                      -+|+|||+|..|+-+|..|++.|.+|+++|+.+.+.
T Consensus       353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~  388 (515)
T TIGR03140       353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK  388 (515)
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC
Confidence            479999999999999999999999999999988763

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=92.16  E-value=0.17  Score=49.80  Aligned_cols=32  Identities=19%  Similarity=0.356  Sum_probs=29.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      .|.|||+|-.|...|..|+++|++|.+++++.
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~   33 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG   33 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence            48999999999999999999999999999853

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=92.09  E-value=0.19  Score=52.42  Aligned_cols=37  Identities=22%  Similarity=0.217  Sum_probs=33.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      -.|+|||+|..|+-+|..|++.|.+|.++++.+++.+
T Consensus       150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~  186 (444)
T PRK09564        150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILP  186 (444)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCc
Confidence            4699999999999999999999999999999887654

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=91.97  E-value=0.19  Score=49.34  Aligned_cols=33  Identities=21%  Similarity=0.233  Sum_probs=30.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      .|.|||+|.-|...|..|+++|++|.++|+++.
T Consensus         5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~   37 (291)
T PRK06035          5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE   37 (291)
T ss_pred             EEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            599999999999999999999999999999763

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=91.84  E-value=0.2  Score=52.38  Aligned_cols=37  Identities=11%  Similarity=0.117  Sum_probs=33.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      -.++|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus       167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~  203 (446)
T TIGR01424       167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILR  203 (446)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCc
Confidence            3699999999999999999999999999999887643

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=91.81  E-value=0.2  Score=49.49  Aligned_cols=32  Identities=22%  Similarity=0.377  Sum_probs=29.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCC--CcEEEEccCC
Q 011414           24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNP   55 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G--~~VlvlE~~~   55 (486)
                      .|.|||+|..|+++|..|++.|  ..|.++|++.
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~   35 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK   35 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence            5999999999999999999999  5899999875

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=91.74  E-value=0.19  Score=52.52  Aligned_cols=34  Identities=24%  Similarity=0.157  Sum_probs=31.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      -.|+|||+|..|+-+|..|++.|.+|++++++++
T Consensus       273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~  306 (449)
T TIGR01316       273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTR  306 (449)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCc
Confidence            4799999999999999999999999999999865

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PTZ00058 glutathione reductase; Provisional

Probab=91.72  E-value=0.19  Score=53.89  Aligned_cols=37  Identities=8%  Similarity=0.012  Sum_probs=34.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      -.|+|||+|..|+-.|..|++.|.+|+++|+++++..
T Consensus       238 k~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~  274 (561)
T PTZ00058        238 KRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLR  274 (561)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccccc
Confidence            4699999999999999999999999999999988753

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=91.71  E-value=0.18  Score=46.38  Aligned_cols=43  Identities=16%  Similarity=0.284  Sum_probs=35.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEcc---CCC-CCCCcccc
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDP---NPF-YGSHFSSL   64 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~---~~~-~GG~~~s~   64 (486)
                      .-.|+|||+|.++-+||.+++|+-.|-+++|-   |+. +||...|-
T Consensus         8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTT   54 (322)
T KOG0404|consen    8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTT   54 (322)
T ss_pred             eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeee
Confidence            34899999999999999999999999999994   443 47765543

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=91.69  E-value=0.21  Score=54.52  Aligned_cols=37  Identities=16%  Similarity=0.183  Sum_probs=34.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      -.|+|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus       313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~  349 (659)
T PTZ00153        313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLP  349 (659)
T ss_pred             CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccc
Confidence            3699999999999999999999999999999998765

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=91.68  E-value=0.22  Score=49.17  Aligned_cols=33  Identities=15%  Similarity=0.206  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ..|.|||+|--|...|++|+++|.+|.++.|..
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~   35 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR   35 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence            469999999999999999999999999999963

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=91.67  E-value=0.23  Score=51.76  Aligned_cols=37  Identities=16%  Similarity=0.198  Sum_probs=34.5

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (486)
                      .++|||+|..|+=.|..+++-|.+|+|+|+++++--.
T Consensus       175 ~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~  211 (454)
T COG1249         175 SLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG  211 (454)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCc
Confidence            5999999999999999999999999999999997553

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=91.67  E-value=0.19  Score=56.61  Aligned_cols=36  Identities=19%  Similarity=0.179  Sum_probs=33.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      .++|||+|+.|+-+|..|++.|.+|+|+|+.+++-.
T Consensus       147 ~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~  182 (847)
T PRK14989        147 RGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMA  182 (847)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchh
Confidence            589999999999999999999999999999987543

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=91.65  E-value=0.29  Score=43.74  Aligned_cols=34  Identities=12%  Similarity=0.122  Sum_probs=30.4

Q ss_pred             CcccEEEECCCh-hHHHHHHHHhhCCCcEEEEccC
Q 011414           21 TAFDLIVIGTGL-PESVISAAASASGKSVLHLDPN   54 (486)
Q Consensus        21 ~~~DViIIGaGl-~GL~aA~~La~~G~~VlvlE~~   54 (486)
                      ....|+|||+|- .|..+|.+|.+.|.+|.++.++
T Consensus        43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~   77 (168)
T cd01080          43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK   77 (168)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence            446899999995 7999999999999999999986

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK10262 thioredoxin reductase; Provisional

Probab=91.63  E-value=0.22  Score=49.50  Aligned_cols=35  Identities=17%  Similarity=0.085  Sum_probs=32.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (486)
                      -.|+|||+|..|+-+|..|++.|.+|+++++.+..
T Consensus       147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~  181 (321)
T PRK10262        147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF  181 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCcc
Confidence            47999999999999999999999999999998865

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=91.58  E-value=0.19  Score=51.96  Aligned_cols=33  Identities=24%  Similarity=0.284  Sum_probs=30.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      .|.|||.|..|+..|..|+++|++|+++|++..
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~   34 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE   34 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence            589999999999999999999999999999764

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=91.45  E-value=0.21  Score=53.28  Aligned_cols=35  Identities=23%  Similarity=0.140  Sum_probs=32.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (486)
                      -+|+|||||.+|+-+|..|+..|++|+++++.+.+
T Consensus       352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l  386 (517)
T PRK15317        352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPEL  386 (517)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccc
Confidence            47999999999999999999999999999998876

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=91.37  E-value=0.21  Score=53.71  Aligned_cols=35  Identities=20%  Similarity=0.316  Sum_probs=32.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (486)
                      -.|+|||+|..|+-.|..|++.|.+|+++++.+..
T Consensus       144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~  178 (555)
T TIGR03143       144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDF  178 (555)
T ss_pred             CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcc
Confidence            47999999999999999999999999999998865

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=91.33  E-value=0.23  Score=48.84  Aligned_cols=30  Identities=20%  Similarity=0.331  Sum_probs=28.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEcc
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDP   53 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~   53 (486)
                      .|.|||+|..|+..|..|+++|++|.++++
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence            589999999999999999999999999987

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=91.24  E-value=0.21  Score=50.03  Aligned_cols=32  Identities=19%  Similarity=0.305  Sum_probs=30.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      .|.|||+|.-|...|..|+++|++|.+++++.
T Consensus         4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~   35 (341)
T PRK08229          4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRAR   35 (341)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence            59999999999999999999999999999853

>PLN02507 glutathione reductase

Probab=91.22  E-value=0.24  Score=52.49  Aligned_cols=36  Identities=14%  Similarity=0.052  Sum_probs=33.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (486)
                      -+|+|||+|..|+-.|..|++.|.+|+++++.+++-
T Consensus       204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l  239 (499)
T PLN02507        204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL  239 (499)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC
Confidence            479999999999999999999999999999988754

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=91.20  E-value=0.28  Score=48.43  Aligned_cols=34  Identities=18%  Similarity=0.157  Sum_probs=30.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-cEEEEccCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPF   56 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~-~VlvlE~~~~   56 (486)
                      ..|.|||+|..|+..|..|+..|+ +|.++|.++.
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~   36 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEG   36 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCC
Confidence            368999999999999999999887 8999998443

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=91.20  E-value=0.23  Score=50.05  Aligned_cols=34  Identities=21%  Similarity=0.239  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCc-EEEEccCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKS-VLHLDPNPF   56 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~-VlvlE~~~~   56 (486)
                      -.|+|||+|..|+-+|..|++.|.+ |+++++.+.
T Consensus       173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~  207 (352)
T PRK12770        173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTI  207 (352)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecch
Confidence            3699999999999999999999997 999998765

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=91.14  E-value=0.27  Score=48.28  Aligned_cols=32  Identities=38%  Similarity=0.504  Sum_probs=30.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      .|.|||+|.-|...|..|+++|++|.++|++.
T Consensus         6 ~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~   37 (295)
T PLN02545          6 KVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP   37 (295)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            59999999999999999999999999999875

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=91.12  E-value=0.28  Score=48.56  Aligned_cols=32  Identities=31%  Similarity=0.379  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      .|.|||+|.-|...|..|+++|++|.++|++.
T Consensus         6 ~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~   37 (311)
T PRK06130          6 NLAIIGAGTMGSGIAALFARKGLQVVLIDVME   37 (311)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            59999999999999999999999999999865

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=91.06  E-value=0.3  Score=43.65  Aligned_cols=32  Identities=22%  Similarity=0.252  Sum_probs=28.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (486)
                      ..|+|+|+|-.|..||..|...|.+|.++|.+
T Consensus        21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~   52 (168)
T PF01262_consen   21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDER   52 (168)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHTT-EEEEEESS
T ss_pred             eEEEEECCCHHHHHHHHHHhHCCCEEEeccCC
Confidence            57999999999999999999999999999985

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK06116 glutathione reductase; Validated

Probab=90.99  E-value=0.28  Score=51.33  Aligned_cols=36  Identities=11%  Similarity=0.041  Sum_probs=33.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (486)
                      -.|+|||+|..|+-.|..|++.|.+|+++++++++.
T Consensus       168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l  203 (450)
T PRK06116        168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPL  203 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCc
Confidence            479999999999999999999999999999988764

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=90.98  E-value=0.32  Score=50.69  Aligned_cols=38  Identities=16%  Similarity=0.196  Sum_probs=34.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (486)
                      -.|+|||+|..|+-.|..|++.|.+|+++|+++++...
T Consensus       159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~  196 (441)
T PRK08010        159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR  196 (441)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC
Confidence            36999999999999999999999999999998877543

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=90.78  E-value=0.78  Score=49.68  Aligned_cols=52  Identities=23%  Similarity=0.308  Sum_probs=42.5

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeC-CCc--EEEc-CEEEE
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQ--DILS-HKLVL  332 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~-~G~--~i~A-~~VI~  332 (486)
                      ..|.++|.+.++..|++|+++++|++|..+  ++++++|+.. +++  +++| +.||+
T Consensus       217 ~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~--~g~v~GV~~~~~~~~~~i~a~k~VVl  272 (581)
T PRK06134        217 NALVARLLKSAEDLGVRIWESAPARELLRE--DGRVAGAVVETPGGLQEIRARKGVVL  272 (581)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEe--CCEEEEEEEEECCcEEEEEeCCEEEE
Confidence            468899999999999999999999999876  6888888653 233  4788 87874

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=90.74  E-value=0.34  Score=49.29  Aligned_cols=41  Identities=17%  Similarity=0.376  Sum_probs=35.7

Q ss_pred             CCCCCCCcccEEEEC-CChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           15 YPPIEPTAFDLIVIG-TGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        15 ~~~~~~~~~DViIIG-aGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      +.++++....|.||| .|+-|...|..|+++|+.|.++++++
T Consensus        91 ~~~~~~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~  132 (374)
T PRK11199         91 FKTLNPDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD  132 (374)
T ss_pred             ccccCcccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence            455566667799999 89999999999999999999999865

>PRK12831 putative oxidoreductase; Provisional

Probab=90.69  E-value=0.28  Score=51.51  Aligned_cols=34  Identities=18%  Similarity=0.063  Sum_probs=31.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      -.|+|||+|..|+-+|..|++.|.+|+++++++.
T Consensus       282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~  315 (464)
T PRK12831        282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSE  315 (464)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCc
Confidence            4799999999999999999999999999998764

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=90.62  E-value=0.3  Score=47.60  Aligned_cols=35  Identities=14%  Similarity=0.110  Sum_probs=32.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (486)
                      ..|+|||+|.+|+-+|..|++.|.+|+++++.+.+
T Consensus       142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~  176 (300)
T TIGR01292       142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKF  176 (300)
T ss_pred             CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCccc
Confidence            47999999999999999999999999999998755

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=90.56  E-value=0.28  Score=51.37  Aligned_cols=34  Identities=18%  Similarity=0.163  Sum_probs=29.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhC--CCcEEEEccCCC
Q 011414           23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPF   56 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~--G~~VlvlE~~~~   56 (486)
                      ..|.|||+|..|+.+|+.||++  |++|+.+|.+..
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~   37 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP   37 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence            3599999999999999999998  588999997653

>PRK13748 putative mercuric reductase; Provisional

Probab=90.47  E-value=0.33  Score=52.35  Aligned_cols=35  Identities=23%  Similarity=0.294  Sum_probs=31.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (486)
                      -.|+|||+|..|+-.|..|++.|.+|+++++++.+
T Consensus       271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l  305 (561)
T PRK13748        271 ERLAVIGSSVVALELAQAFARLGSKVTILARSTLF  305 (561)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccc
Confidence            36999999999999999999999999999986533

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=90.41  E-value=0.34  Score=49.08  Aligned_cols=32  Identities=28%  Similarity=0.420  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCC-CcEEEEccC
Q 011414           23 FDLIVIGTGLPESVISAAASASG-KSVLHLDPN   54 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G-~~VlvlE~~   54 (486)
                      .+|+|||+|-.|..+|..|+++| .+|++.+|+
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs   34 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS   34 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence            47999999999999999999999 999999997

>PLN02546 glutathione reductase

Probab=90.35  E-value=0.33  Score=52.15  Aligned_cols=37  Identities=8%  Similarity=-0.029  Sum_probs=34.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      -+|+|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus       253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~  289 (558)
T PLN02546        253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLR  289 (558)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccc
Confidence            4799999999999999999999999999999888654

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=90.28  E-value=0.36  Score=47.96  Aligned_cols=32  Identities=19%  Similarity=0.370  Sum_probs=30.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      .|.|||+|.-|...|..|+++|++|.+++++.
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~   34 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP   34 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            69999999999999999999999999999864

>PRK14694 putative mercuric reductase; Provisional

Probab=90.23  E-value=0.37  Score=50.66  Aligned_cols=35  Identities=23%  Similarity=0.243  Sum_probs=31.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (486)
                      -.++|||+|..|+-.|..|++.|.+|+++++...+
T Consensus       179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l  213 (468)
T PRK14694        179 ERLLVIGASVVALELAQAFARLGSRVTVLARSRVL  213 (468)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCC
Confidence            46999999999999999999999999999975433

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=90.17  E-value=0.33  Score=41.72  Aligned_cols=32  Identities=28%  Similarity=0.468  Sum_probs=28.0

Q ss_pred             EEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           25 LIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        25 ViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      ++|+|+|+.+...|..++.-|++|+|+|.+..
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e   32 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE   32 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence            58999999999999999999999999999854

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=90.09  E-value=0.4  Score=47.44  Aligned_cols=33  Identities=24%  Similarity=0.310  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ..|.|||+|.-|...|..|+++|++|.+.+++.
T Consensus         5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~   37 (308)
T PRK14619          5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRS   37 (308)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            469999999999999999999999999999875

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=90.06  E-value=0.3  Score=47.40  Aligned_cols=37  Identities=24%  Similarity=0.298  Sum_probs=31.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhC-CC-cEEEEccCCC
Q 011414           20 PTAFDLIVIGTGLPESVISAAASAS-GK-SVLHLDPNPF   56 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~-G~-~VlvlE~~~~   56 (486)
                      .+++.|+|||||-+|+..|+.+.+. |. +|-|+|..++
T Consensus        37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~   75 (446)
T KOG3851|consen   37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED   75 (446)
T ss_pred             ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence            4689999999999999999999876 54 7899987653

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=90.05  E-value=0.37  Score=48.47  Aligned_cols=39  Identities=26%  Similarity=0.326  Sum_probs=35.0

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCC-CcEEEEccCCCC
Q 011414           19 EPTAFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFY   57 (486)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G-~~VlvlE~~~~~   57 (486)
                      ++..+|+|.||-|...|..|++|...+ .+++.|||.+.+
T Consensus         2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F   41 (436)
T COG3486           2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF   41 (436)
T ss_pred             CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence            567799999999999999999999875 889999998764

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=90.02  E-value=0.34  Score=47.19  Aligned_cols=32  Identities=16%  Similarity=0.294  Sum_probs=29.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      .|.|||.|+-|...|..|+++|++|.+++++.
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~   33 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE   33 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence            48999999999999999999999999999864

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=90.00  E-value=1.1  Score=45.51  Aligned_cols=28  Identities=36%  Similarity=0.507  Sum_probs=25.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEE
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHL   51 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~Vlvl   51 (486)
                      ||||||||++|+.||+++||.|.+|+++
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Li   28 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLI   28 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEE
Confidence            8999999999999999999999999999

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK07121 hypothetical protein; Validated

Probab=89.97  E-value=0.9  Score=48.12  Aligned_cols=54  Identities=26%  Similarity=0.345  Sum_probs=43.4

Q ss_pred             cchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeC-CCc--EEEc-CEEEE
Q 011414          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQ--DILS-HKLVL  332 (486)
Q Consensus       278 ~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~-~G~--~i~A-~~VI~  332 (486)
                      ...+.++|.+.++..|++|+++++|++|..++ +|++++|+.. +|+  .++| +.||+
T Consensus       176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~-~g~v~Gv~~~~~~~~~~i~a~k~VVl  233 (492)
T PRK07121        176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDD-DGRVVGVEARRYGETVAIRARKGVVL  233 (492)
T ss_pred             hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECC-CCCEEEEEEEeCCcEEEEEeCCEEEE
Confidence            45789999999999999999999999998762 5688888764 333  4788 88884

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=89.96  E-value=0.43  Score=42.13  Aligned_cols=35  Identities=17%  Similarity=0.206  Sum_probs=30.8

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEcc
Q 011414           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDP   53 (486)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~   53 (486)
                      +.+...|+|||||-.|+.-|..|.+.|.+|+|+..
T Consensus        10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp   44 (157)
T PRK06719         10 NLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP   44 (157)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence            34556799999999999999999999999999953

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=89.94  E-value=0.41  Score=44.30  Aligned_cols=35  Identities=11%  Similarity=0.092  Sum_probs=31.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      +...|+|||||-.|...+..|.+.|.+|+|+..+.
T Consensus         8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~   42 (205)
T TIGR01470         8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL   42 (205)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            34579999999999999999999999999998753

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=89.91  E-value=0.47  Score=39.19  Aligned_cols=32  Identities=25%  Similarity=0.423  Sum_probs=28.6

Q ss_pred             EEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           25 LIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        25 ViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      |||+|.|--|...|..|.+.|.+|+++|++..
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~   32 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE   32 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence            79999999999999999998889999999753

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=89.86  E-value=0.45  Score=47.45  Aligned_cols=33  Identities=21%  Similarity=0.355  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ..|.|||+|--|...|..|+++|++|.+++++.
T Consensus         5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~   37 (328)
T PRK14618          5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRP   37 (328)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            369999999999999999999999999999964

>TIGR00518 alaDH alanine dehydrogenase

Probab=89.84  E-value=0.38  Score=48.84  Aligned_cols=33  Identities=30%  Similarity=0.347  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      .+|+|||+|-.|+.+|..|.+.|.+|.++|++.
T Consensus       168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~  200 (370)
T TIGR00518       168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINI  200 (370)
T ss_pred             ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            569999999999999999999999999999863

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=89.80  E-value=0.44  Score=44.01  Aligned_cols=35  Identities=11%  Similarity=0.255  Sum_probs=31.2

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (486)
                      .+...|+|||||-.|...|..|.++|.+|+|+++.
T Consensus         8 l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~   42 (202)
T PRK06718          8 LSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE   42 (202)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence            34568999999999999999999999999999763

>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E

Probab=89.74  E-value=1.5  Score=47.42  Aligned_cols=58  Identities=16%  Similarity=0.275  Sum_probs=46.5

Q ss_pred             eecCCcc-hHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEe---CCCc--EEEcCEEEE
Q 011414          273 YPIYGQG-ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (486)
Q Consensus       273 ~p~gG~~-~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~--~i~A~~VI~  332 (486)
                      ++..++| .|.++|.+.+...|.+|+.+++|++++.+  +|+++||..   .+|+  .|+|+.||+
T Consensus       112 ~~~~~~G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~--~g~v~Ga~~~~~~~g~~~~i~AkaVIL  175 (565)
T TIGR01816       112 AAADRTGHAILHTLYQQNLKADTSFFNEYFALDLLME--DGECRGVIAYCLETGEIHRFRAKAVVL  175 (565)
T ss_pred             ecCCCchHHHHHHHHHHHHhCCCEEEeccEEEEEEee--CCEEEEEEEEEcCCCcEEEEEeCeEEE
Confidence            4444444 78999999888899999999999999886  789999864   3565  478999995

coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.

>PRK14727 putative mercuric reductase; Provisional

Probab=89.59  E-value=0.45  Score=50.18  Aligned_cols=34  Identities=26%  Similarity=0.319  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      -.|+|||+|..|+-.|..|++.|.+|+++++...
T Consensus       189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~  222 (479)
T PRK14727        189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARSTL  222 (479)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence            3699999999999999999999999999997543

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=89.56  E-value=1.2  Score=48.33  Aligned_cols=52  Identities=25%  Similarity=0.267  Sum_probs=42.1

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCC-Cc--EEEc-CEEEE
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS-GQ--DILS-HKLVL  332 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~-G~--~i~A-~~VI~  332 (486)
                      ..|.++|.+.++..|++++++++|.++..+  ++++++|+..+ |+  ++.| +.||+
T Consensus       221 ~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~--~g~V~GV~~~~~g~~~~i~A~~~VVl  276 (578)
T PRK12843        221 NALIGRLLYSLRARGVRILTQTDVESLETD--HGRVIGATVVQGGVRRRIRARGGVVL  276 (578)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEee--CCEEEEEEEecCCeEEEEEccceEEE
Confidence            378899999999999999999999999876  78888987644 33  4676 56774

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=89.56  E-value=0.48  Score=42.04  Aligned_cols=33  Identities=24%  Similarity=0.334  Sum_probs=28.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ..|-|||.|..|...|..|.++|++|.++|++.
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~   34 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP   34 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence            368999999999999999999999999999864

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=89.54  E-value=0.35  Score=41.00  Aligned_cols=38  Identities=16%  Similarity=0.329  Sum_probs=29.3

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        18 ~~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      .......|.|||+|=.|-..|.+|.++|+.|.-+..++
T Consensus         6 ~~~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs   43 (127)
T PF10727_consen    6 TQAARLKIGIIGAGRVGTALARALARAGHEVVGVYSRS   43 (127)
T ss_dssp             ------EEEEECTSCCCCHHHHHHHHTTSEEEEESSCH
T ss_pred             cCCCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            34567899999999999999999999999998776653

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=89.47  E-value=0.28  Score=39.90  Aligned_cols=37  Identities=16%  Similarity=0.238  Sum_probs=31.7

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      +.+...|+|||+|-.+..-+..|.+.|.+|+|+.+..
T Consensus         4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~   40 (103)
T PF13241_consen    4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI   40 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence            3456789999999999999999999999999999875

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=89.47  E-value=0.41  Score=48.95  Aligned_cols=32  Identities=22%  Similarity=0.239  Sum_probs=28.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      .|.|||+|..|+..|..|+. |++|+++|.+..
T Consensus         2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~   33 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPS   33 (388)
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHH
Confidence            48899999999999988885 999999998764

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=89.25  E-value=1.3  Score=46.91  Aligned_cols=63  Identities=13%  Similarity=0.134  Sum_probs=44.7

Q ss_pred             cceEeecCCc---chHHHHHHHHHHH-cCcEEEeCCceeEEEEecCCCeEEEEE---eCCCc--EEEcCEEEEC
Q 011414          269 GALIYPIYGQ---GELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVR---LASGQ--DILSHKLVLD  333 (486)
Q Consensus       269 g~~~~p~gG~---~~L~qal~r~~~~-~Gg~i~l~~~V~~I~~~~~~g~~~gV~---~~~G~--~i~A~~VI~~  333 (486)
                      ++.+.|.+|.   +.|.++|++.+.. .|++++++++|..|..+. ++. +.|+   +.+|+  +++||.||+.
T Consensus       171 ~Al~~p~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~-d~~-w~v~v~~t~~g~~~~i~Ad~VV~A  242 (497)
T PRK13339        171 AASKIDEGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLS-DGG-WEVTVKDRNTGEKREQVADYVFIG  242 (497)
T ss_pred             eEEECCCceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECC-CCC-EEEEEEecCCCceEEEEcCEEEEC
Confidence            3455677763   6899999998864 589999999999997652 333 3443   33453  6899998853

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=89.12  E-value=0.47  Score=47.27  Aligned_cols=32  Identities=25%  Similarity=0.249  Sum_probs=29.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      .|.|||+|--|.+.|..|+++|++|.++.++.
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~   33 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH   33 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence            48999999999999999999999999999864

>PTZ00052 thioredoxin reductase; Provisional

Probab=89.05  E-value=0.48  Score=50.26  Aligned_cols=31  Identities=10%  Similarity=0.051  Sum_probs=29.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (486)
                      +++|||+|..|+-.|..|++.|.+|++++++
T Consensus       184 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~  214 (499)
T PTZ00052        184 KTLIVGASYIGLETAGFLNELGFDVTVAVRS  214 (499)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence            7999999999999999999999999999975

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=89.01  E-value=1.6  Score=45.19  Aligned_cols=34  Identities=35%  Similarity=0.529  Sum_probs=32.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      +|||||||+|++|+++|..|+++|++|+++|++.
T Consensus         2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~   35 (422)
T PRK05329          2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ   35 (422)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence            4899999999999999999999999999999974

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=88.97  E-value=0.6  Score=48.72  Aligned_cols=35  Identities=20%  Similarity=0.139  Sum_probs=32.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (486)
                      ..++|+|.|-+|+++|..|++.|++|.+.|.++..
T Consensus         6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~   40 (445)
T PRK04308          6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKP   40 (445)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCc
Confidence            46999999999999999999999999999987653

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=88.94  E-value=0.47  Score=49.73  Aligned_cols=32  Identities=19%  Similarity=0.299  Sum_probs=30.5

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      .|.|+|.|.+|.++|..|.+.|++|.+.|+++
T Consensus        16 ~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~   47 (458)
T PRK01710         16 KVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS   47 (458)
T ss_pred             eEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence            69999999999999999999999999999875

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=88.90  E-value=0.75  Score=42.39  Aligned_cols=37  Identities=16%  Similarity=0.130  Sum_probs=32.4

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      +.....++|+|.|-.|..+|..|.+.|.+|++.|++.
T Consensus        25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~   61 (200)
T cd01075          25 SLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE   61 (200)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            3444579999999999999999999999999999873

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=88.88  E-value=0.25  Score=47.51  Aligned_cols=25  Identities=16%  Similarity=0.081  Sum_probs=21.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCC
Q 011414           21 TAFDLIVIGTGLPESVISAAASASG   45 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G   45 (486)
                      ...+++|||+|..||++|..+.+.+
T Consensus         2 ~~~~iaViGaGVIGlsTA~~i~~~~   26 (342)
T KOG3923|consen    2 KTPRIAVIGAGVIGLSTALCILELY   26 (342)
T ss_pred             CCccEEEEcCCeechhHHHHHHHhh
Confidence            3468999999999999999888865

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=88.88  E-value=0.61  Score=42.99  Aligned_cols=33  Identities=15%  Similarity=0.210  Sum_probs=29.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC-cEEEEccC
Q 011414           22 AFDLIVIGTGLPESVISAAASASGK-SVLHLDPN   54 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~-~VlvlE~~   54 (486)
                      ...|.|||+|--|+.+|..|+++|. +++++|..
T Consensus        21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            3579999999999999999999998 59998885

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=88.78  E-value=0.46  Score=50.18  Aligned_cols=32  Identities=13%  Similarity=0.074  Sum_probs=29.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (486)
                      -.++|||+|..|+-+|..|++.|.+|+++++.
T Consensus       181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~  212 (484)
T TIGR01438       181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS  212 (484)
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence            36999999999999999999999999999974

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=88.73  E-value=0.44  Score=43.96  Aligned_cols=35  Identities=29%  Similarity=0.347  Sum_probs=31.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      ...|.|||+|+-|+-.|-..+.+|+.|.++|++.-
T Consensus        11 ~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~   45 (298)
T KOG2304|consen   11 IKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED   45 (298)
T ss_pred             ccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence            35799999999999999999999999999999854

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=88.66  E-value=0.55  Score=43.89  Aligned_cols=32  Identities=16%  Similarity=0.264  Sum_probs=28.9

Q ss_pred             cEEEEC-CChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           24 DLIVIG-TGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        24 DViIIG-aGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      .|.||| +|.-|.+.|..|+++|++|.++.+++
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~   34 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL   34 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence            489997 79999999999999999999998754

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=88.60  E-value=0.59  Score=48.78  Aligned_cols=33  Identities=18%  Similarity=0.204  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ..|+|+|+|-.|.++|..|++.|++|.+.|++.
T Consensus         6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~   38 (447)
T PRK02472          6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP   38 (447)
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            358999999999999999999999999999765

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=88.57  E-value=0.74  Score=39.44  Aligned_cols=33  Identities=24%  Similarity=0.377  Sum_probs=30.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCc-EEEEccC
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKS-VLHLDPN   54 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~-VlvlE~~   54 (486)
                      ...|+|||+|=+|-.++.+|+..|.+ |.++-|+
T Consensus        12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt   45 (135)
T PF01488_consen   12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRT   45 (135)
T ss_dssp             TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred             CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence            45799999999999999999999987 9999875

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=88.54  E-value=0.52  Score=49.42  Aligned_cols=34  Identities=24%  Similarity=0.155  Sum_probs=31.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-cEEEEccCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPF   56 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~-~VlvlE~~~~   56 (486)
                      -.|+|||+|..|+-+|..|++.|. +|+++++++.
T Consensus       274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~  308 (457)
T PRK11749        274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGR  308 (457)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence            479999999999999999999998 8999998764

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=88.50  E-value=0.46  Score=50.31  Aligned_cols=33  Identities=30%  Similarity=0.385  Sum_probs=30.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      .|.|||+|.-|.-.|..|+++|++|.++|+++.
T Consensus         7 kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e   39 (503)
T TIGR02279         7 TVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE   39 (503)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            499999999999999999999999999998754

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=88.40  E-value=0.48  Score=50.16  Aligned_cols=32  Identities=28%  Similarity=0.366  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      .|.|||+|.-|...|..|+++|++|+++|+++
T Consensus         6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~   37 (495)
T PRK07531          6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPHP   37 (495)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            59999999999999999999999999999864

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=88.39  E-value=1.7  Score=45.10  Aligned_cols=51  Identities=22%  Similarity=0.330  Sum_probs=41.3

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~  332 (486)
                      ..+-+.|.+.++..|++++.+++|++|..+  ++++++|+ ++|++++|+.||.
T Consensus       108 ~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~--~g~v~~v~-~~g~~i~A~~VI~  158 (428)
T PRK10157        108 SKFDAWLMEQAEEAGAQLITGIRVDNLVQR--DGKVVGVE-ADGDVIEAKTVIL  158 (428)
T ss_pred             HHHHHHHHHHHHHCCCEEECCCEEEEEEEe--CCEEEEEE-cCCcEEECCEEEE
Confidence            356667888888899999999999999876  66666665 5778899999884

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=88.15  E-value=0.59  Score=49.41  Aligned_cols=37  Identities=14%  Similarity=0.122  Sum_probs=31.3

Q ss_pred             ccEEEECCChhHHHHHHHHh---hCCCcEEEEccCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAAS---ASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La---~~G~~VlvlE~~~~~GG   59 (486)
                      -.|+|||+|..|+-.|..++   +.|.+|+++|+++++..
T Consensus       188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~  227 (486)
T TIGR01423       188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILR  227 (486)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcccc
Confidence            46999999999999997554   45999999999998753

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=88.02  E-value=0.64  Score=45.93  Aligned_cols=33  Identities=21%  Similarity=0.355  Sum_probs=29.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCC--CcEEEEccCCC
Q 011414           24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNPF   56 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G--~~VlvlE~~~~   56 (486)
                      .|+|||+|..|.++|..|+..|  .++.++|++..
T Consensus         2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~   36 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE   36 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence            4899999999999999999999  57999999753

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=87.98  E-value=0.57  Score=49.27  Aligned_cols=34  Identities=12%  Similarity=-0.184  Sum_probs=31.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      ..|+|+|.|-+|.++|..|.+.|.+|++.|.++.
T Consensus         9 ~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~   42 (468)
T PRK04690          9 RRVALWGWGREGRAAYRALRAHLPAQALTLFCNA   42 (468)
T ss_pred             CEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCc
Confidence            3699999999999999999999999999997654

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=87.76  E-value=0.7  Score=48.67  Aligned_cols=40  Identities=28%  Similarity=0.327  Sum_probs=34.2

Q ss_pred             CCCCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           14 PYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        14 ~~~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ..|.+.+..  |.|+|.|-+|.++|..|.+.|.+|.+.|++.
T Consensus         9 ~~~~~~~~~--v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~   48 (473)
T PRK00141          9 ALPQELSGR--VLVAGAGVSGRGIAAMLSELGCDVVVADDNE   48 (473)
T ss_pred             hcccccCCe--EEEEccCHHHHHHHHHHHHCCCEEEEECCCh
Confidence            455656554  9999999999999999999999999999753

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=87.76  E-value=0.77  Score=44.27  Aligned_cols=34  Identities=21%  Similarity=0.274  Sum_probs=30.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhCC-CcEEEEccCC
Q 011414           22 AFDLIVIGTGLPESVISAAASASG-KSVLHLDPNP   55 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G-~~VlvlE~~~   55 (486)
                      ...|+|||.|-.|+.+|-.|+++| .+++++|...
T Consensus        30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~   64 (268)
T PRK15116         30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD   64 (268)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence            357999999999999999999999 6899999753

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=87.60  E-value=0.7  Score=47.92  Aligned_cols=37  Identities=16%  Similarity=0.161  Sum_probs=32.3

Q ss_pred             cEEEECCChhHHHHHHHHhh--------------CCCcEEEEccCCCCCCC
Q 011414           24 DLIVIGTGLPESVISAAASA--------------SGKSVLHLDPNPFYGSH   60 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~--------------~G~~VlvlE~~~~~GG~   60 (486)
                      .|+|||+|..|+-.|..|+.              .|.+|+++|+.+++...
T Consensus       175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~  225 (424)
T PTZ00318        175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGS  225 (424)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccccc
Confidence            79999999999999999875              58999999999877543

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=87.57  E-value=0.84  Score=47.63  Aligned_cols=35  Identities=26%  Similarity=0.295  Sum_probs=32.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (486)
                      .+|+|||+|-++...|..|++.|.+|.++=|++-+
T Consensus       176 KrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~  210 (443)
T COG2072         176 KRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPH  210 (443)
T ss_pred             CeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCc
Confidence            58999999999999999999999999999887654

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=87.49  E-value=0.62  Score=45.89  Aligned_cols=31  Identities=19%  Similarity=0.249  Sum_probs=28.6

Q ss_pred             EEEECCChhHHHHHHHHhhCCC-cEEEEccCC
Q 011414           25 LIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (486)
Q Consensus        25 ViIIGaGl~GL~aA~~La~~G~-~VlvlE~~~   55 (486)
                      |.|||+|..|...|..|+..|. +|.++|.+.
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e   32 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE   32 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence            5799999999999999999887 999999984

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=87.47  E-value=0.76  Score=48.00  Aligned_cols=38  Identities=16%  Similarity=0.137  Sum_probs=33.8

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        18 ~~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      |+.++--|+|||-|-+|.++|..|.+.|++|.+.|.++
T Consensus         2 ~~~~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~   39 (448)
T PRK03803          2 LMQSDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE   39 (448)
T ss_pred             ccccCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence            45555669999999999999999999999999999875

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=87.44  E-value=0.67  Score=49.20  Aligned_cols=34  Identities=29%  Similarity=0.367  Sum_probs=31.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      -.|.|||+|.-|.-.|..|+++|+.|.++|++..
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e   41 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG   41 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            3589999999999999999999999999998864

>PRK06175 L-aspartate oxidase; Provisional

Probab=87.44  E-value=2.4  Score=44.14  Aligned_cols=39  Identities=10%  Similarity=0.220  Sum_probs=35.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (486)
                      .++||||||+|.+||+||..++ .|.+|++|||.+..||.
T Consensus         3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~   41 (433)
T PRK06175          3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECN   41 (433)
T ss_pred             ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCc
Confidence            4689999999999999999975 79999999999988775

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=87.28  E-value=0.66  Score=45.41  Aligned_cols=31  Identities=23%  Similarity=0.262  Sum_probs=29.3

Q ss_pred             EEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           25 LIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        25 ViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      |.|||.|..|...|..|++.|++|.+++++.
T Consensus         2 IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~   32 (291)
T TIGR01505         2 VGFIGLGIMGSPMSINLAKAGYQLHVTTIGP   32 (291)
T ss_pred             EEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            7899999999999999999999999999874

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=87.27  E-value=0.57  Score=51.96  Aligned_cols=34  Identities=24%  Similarity=0.285  Sum_probs=31.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      ..|.|||+|..|.-.|..++++|++|.++|.++.
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~  347 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK  347 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence            3599999999999999999999999999999854

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=87.24  E-value=0.69  Score=48.92  Aligned_cols=32  Identities=25%  Similarity=0.389  Sum_probs=29.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      .|+|+|.|.+|++++..|.+.|.+|.+.|.+.
T Consensus        14 ~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~   45 (488)
T PRK03369         14 PVLVAGAGVTGRAVLAALTRFGARPTVCDDDP   45 (488)
T ss_pred             eEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            59999999999999999999999999999753

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=87.08  E-value=0.66  Score=47.96  Aligned_cols=36  Identities=19%  Similarity=0.172  Sum_probs=33.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (486)
                      ...|.|+|-|.+|+++|..|.+.|.+|.+.|.+...
T Consensus         7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~   42 (448)
T COG0771           7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP   42 (448)
T ss_pred             CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence            356999999999999999999999999999987766

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=87.02  E-value=2.1  Score=41.19  Aligned_cols=53  Identities=15%  Similarity=0.099  Sum_probs=42.0

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeC-----------CCcEEEcCEEEE
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-----------SGQDILSHKLVL  332 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~-----------~G~~i~A~~VI~  332 (486)
                      .++.+.|.+.+...|+++++++.|+.+..++ ++++.+|.+.           +..+++|+.||.
T Consensus       104 ~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~-~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~  167 (257)
T PRK04176        104 VEAAAKLAAAAIDAGAKIFNGVSVEDVILRE-DPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVD  167 (257)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCceeceeeEeC-CCcEEEEEEccccccccCCCCCcEEEEcCEEEE
Confidence            5788889999999999999999999998762 4477777653           124689999883

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=86.98  E-value=1.3  Score=45.30  Aligned_cols=42  Identities=17%  Similarity=0.358  Sum_probs=36.5

Q ss_pred             CCCCCCCCcccEEEECC-ChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           14 PYPPIEPTAFDLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        14 ~~~~~~~~~~DViIIGa-Gl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      +|.+.+.+...|+|+|+ |..|..++..|.++|++|.++.++.
T Consensus        52 ~~~~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~   94 (390)
T PLN02657         52 SFRSKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREK   94 (390)
T ss_pred             cccccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEech
Confidence            47677777778999997 9999999999999999999998864

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=86.98  E-value=1  Score=45.68  Aligned_cols=40  Identities=20%  Similarity=0.276  Sum_probs=34.1

Q ss_pred             CCCCCCCcccEEEECC-ChhHHHHHHHHhhCCCcEEEEccC
Q 011414           15 YPPIEPTAFDLIVIGT-GLPESVISAAASASGKSVLHLDPN   54 (486)
Q Consensus        15 ~~~~~~~~~DViIIGa-Gl~GL~aA~~La~~G~~VlvlE~~   54 (486)
                      .|.+......|+|.|+ |.-|..++.+|.+.|++|+.+++.
T Consensus        14 ~~~~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~   54 (370)
T PLN02695         14 EPYWPSEKLRICITGAGGFIASHIARRLKAEGHYIIASDWK   54 (370)
T ss_pred             CCCCCCCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEec
Confidence            3444456678999998 999999999999999999999975

>PRK06847 hypothetical protein; Provisional

Probab=86.80  E-value=2.3  Score=42.93  Aligned_cols=37  Identities=16%  Similarity=0.309  Sum_probs=34.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (486)
                      ...||+|||||++||++|..|++.|.+|+|+|+++..
T Consensus         3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~   39 (375)
T PRK06847          3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEW   39 (375)
T ss_pred             CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            4579999999999999999999999999999998753

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=86.66  E-value=2.1  Score=43.63  Aligned_cols=38  Identities=18%  Similarity=0.237  Sum_probs=35.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (486)
                      ...+||+|||||++|+++|+.|+++|++|+|+|+++..
T Consensus         4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~   41 (392)
T PRK08773          4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPP   41 (392)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCc
Confidence            46789999999999999999999999999999998753

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=86.51  E-value=0.75  Score=50.95  Aligned_cols=34  Identities=21%  Similarity=0.321  Sum_probs=31.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      ..|.|||+|..|.-.|..++++|++|.++|.+..
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~  347 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQH  347 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            3599999999999999999999999999998753

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK06223 malate dehydrogenase; Reviewed

Probab=86.45  E-value=0.92  Score=44.78  Aligned_cols=34  Identities=15%  Similarity=0.124  Sum_probs=30.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-cEEEEccCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPF   56 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~-~VlvlE~~~~   56 (486)
                      ..|.|||+|..|...|..|+..|. +|.++|.+..
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~   37 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG   37 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence            479999999999999999999876 9999999654

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=86.40  E-value=0.79  Score=45.04  Aligned_cols=32  Identities=25%  Similarity=0.377  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      +|.|||.|.-|...|..|+++|++|.+++++.
T Consensus         3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~   34 (296)
T PRK15461          3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP   34 (296)
T ss_pred             eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            68999999999999999999999999999874

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=86.39  E-value=2.1  Score=46.45  Aligned_cols=54  Identities=22%  Similarity=0.317  Sum_probs=41.9

Q ss_pred             cchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeC-CCc--EEEcCE-EEE
Q 011414          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQ--DILSHK-LVL  332 (486)
Q Consensus       278 ~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~-~G~--~i~A~~-VI~  332 (486)
                      ...+...|.+.++..|.+|+++++|++|..++ +|+++||... +|+  .++|++ ||+
T Consensus       212 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~-~g~V~Gv~~~~~~~~~~i~a~~aVil  269 (584)
T PRK12835        212 GQSLVARLRLALKDAGVPLWLDSPMTELITDP-DGAVVGAVVEREGRTLRIGARRGVIL  269 (584)
T ss_pred             cHHHHHHHHHHHHhCCceEEeCCEEEEEEECC-CCcEEEEEEEeCCcEEEEEeceeEEE
Confidence            35677778888889999999999999999863 6889888653 344  367874 773

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=86.36  E-value=1.8  Score=45.06  Aligned_cols=38  Identities=26%  Similarity=0.521  Sum_probs=36.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCC-CcEEEEccCCCCCCCc
Q 011414           24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGSHF   61 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G-~~VlvlE~~~~~GG~~   61 (486)
                      ||||||+|++|++||+.++++| .+|+||||++..||..
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s   39 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNS   39 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcc
Confidence            8999999999999999999999 9999999999998864

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=86.36  E-value=0.77  Score=51.40  Aligned_cols=34  Identities=18%  Similarity=0.099  Sum_probs=31.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCc-EEEEccCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKS-VLHLDPNPF   56 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~-VlvlE~~~~   56 (486)
                      -.|||||+|..|+-+|..|.+.|.+ |+++++++.
T Consensus       571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~  605 (752)
T PRK12778        571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSE  605 (752)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence            4799999999999999999999987 999998765

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=86.33  E-value=2.6  Score=42.75  Aligned_cols=42  Identities=19%  Similarity=0.270  Sum_probs=37.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (486)
                      +.++||||||+|+.||++|++|+++|.+|+++|++...+|.+
T Consensus         2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~g~s   43 (387)
T COG0665           2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGGAA   43 (387)
T ss_pred             CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCCcch
Confidence            456899999999999999999999999999999998776433

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=85.99  E-value=0.79  Score=48.35  Aligned_cols=33  Identities=30%  Similarity=0.455  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      -.|+|+|+|..||.|+..+...|.+|.++|.++
T Consensus       166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~  198 (509)
T PRK09424        166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP  198 (509)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            479999999999999999999999999999875

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=85.93  E-value=2.4  Score=45.64  Aligned_cols=53  Identities=21%  Similarity=0.299  Sum_probs=42.7

Q ss_pred             cchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeC-CCc--EEEcC-EEEE
Q 011414          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQ--DILSH-KLVL  332 (486)
Q Consensus       278 ~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~-~G~--~i~A~-~VI~  332 (486)
                      ...|.+.|.+.++..|++++++++|++|+.+  +++++||+.. +|+  .+.|+ .||+
T Consensus       207 G~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~--~g~v~Gv~~~~~g~~~~i~A~~aVIl  263 (557)
T PRK12844        207 GAALIGRMLEAALAAGVPLWTNTPLTELIVE--DGRVVGVVVVRDGREVLIRARRGVLL  263 (557)
T ss_pred             cHHHHHHHHHHHHhCCCEEEeCCEEEEEEEe--CCEEEEEEEEECCeEEEEEecceEEE
Confidence            3578889999999999999999999999887  7889998763 454  47785 4774

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=85.92  E-value=3.6  Score=44.54  Aligned_cols=41  Identities=17%  Similarity=0.190  Sum_probs=36.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCC--CcEEEEccCCCCCCC
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSH   60 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G--~~VlvlE~~~~~GG~   60 (486)
                      |.++||||||+|.+||.||+.++++|  .+|+|+||....||.
T Consensus         1 ~~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~   43 (575)
T PRK05945          1 MLEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSH   43 (575)
T ss_pred             CCcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchh
Confidence            35689999999999999999999874  899999999877764

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=85.92  E-value=3.1  Score=44.99  Aligned_cols=60  Identities=18%  Similarity=0.228  Sum_probs=46.8

Q ss_pred             EeecCCc-chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEe---CCCc--EEEcCEEEE
Q 011414          272 IYPIYGQ-GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (486)
Q Consensus       272 ~~p~gG~-~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~--~i~A~~VI~  332 (486)
                      .++..+. ..|.++|.+.+...|.+++.++.+.+++.+ ++|+++||..   .+|+  .|+|+.||+
T Consensus       118 ~~~~~~tG~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVL  183 (570)
T PRK05675        118 CAAADRTGHALLHTLYQGNLKNGTTFLNEWYAVDLVKN-QDGAVVGVIAICIETGETVYIKSKATVL  183 (570)
T ss_pred             EecCCCCHHHHHHHHHHHHhccCCEEEECcEEEEEEEc-CCCeEEEEEEEEcCCCcEEEEecCeEEE
Confidence            3444444 478899999888899999999999999875 2689999864   3565  478999985

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=85.85  E-value=2.2  Score=32.58  Aligned_cols=41  Identities=17%  Similarity=0.189  Sum_probs=34.0

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCC
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG  322 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G  322 (486)
                      .++.+.+.+..+..|.++++++.|++|..++ ++ +. |+++||
T Consensus        40 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~-~~-~~-V~~~~g   80 (80)
T PF00070_consen   40 PDAAKILEEYLRKRGVEVHTNTKVKEIEKDG-DG-VE-VTLEDG   80 (80)
T ss_dssp             HHHHHHHHHHHHHTTEEEEESEEEEEEEEET-TS-EE-EEEETS
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeC-CE-EE-EEEecC
Confidence            4677888888999999999999999999872 44 55 888886

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=85.85  E-value=3.5  Score=44.52  Aligned_cols=38  Identities=21%  Similarity=0.287  Sum_probs=35.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCc
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (486)
                      ||||||+|++||+||+.++++|.+|+||||....||..
T Consensus         1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~s   38 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHT   38 (566)
T ss_pred             CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCcc
Confidence            89999999999999999999999999999998877743

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>TIGR00292 thiazole biosynthesis enzyme

Probab=85.79  E-value=3  Score=39.94  Aligned_cols=52  Identities=19%  Similarity=0.135  Sum_probs=41.9

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCC--eEEEEEeCC-----------CcEEEcCEEEE
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSG--SYKGVRLAS-----------GQDILSHKLVL  332 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g--~~~gV~~~~-----------G~~i~A~~VI~  332 (486)
                      .++.+.|.+.+...|++++.++.|+.+..+  ++  ++.||.+..           ..+++|+.||.
T Consensus       100 ~el~~~L~~~a~e~GV~I~~~t~V~dli~~--~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVd  164 (254)
T TIGR00292       100 AEFISTLASKALQAGAKIFNGTSVEDLITR--DDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVD  164 (254)
T ss_pred             HHHHHHHHHHHHHcCCEEECCcEEEEEEEe--CCCCceEEEEeCCccccccCCCCCCEEEEcCEEEE
Confidence            478888888889999999999999999886  44  678887632           24689999883

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=85.73  E-value=1.7  Score=33.88  Aligned_cols=32  Identities=25%  Similarity=0.338  Sum_probs=29.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhC-CCcEEEEcc
Q 011414           22 AFDLIVIGTGLPESVISAAASAS-GKSVLHLDP   53 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~-G~~VlvlE~   53 (486)
                      ...++|+|+|-.|..+|.+|.+. +.+|.++++
T Consensus        23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            35699999999999999999998 789999988

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=85.70  E-value=1.2  Score=42.51  Aligned_cols=35  Identities=17%  Similarity=0.180  Sum_probs=32.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      ...++|+|+|+-+...|..++..|++|+|+|.++.
T Consensus       100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~  134 (246)
T TIGR02964       100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA  134 (246)
T ss_pred             CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence            46899999999999999999999999999997755

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=85.69  E-value=2.4  Score=45.87  Aligned_cols=52  Identities=27%  Similarity=0.402  Sum_probs=42.3

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCC--Cc-EEEcC-EEEE
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS--GQ-DILSH-KLVL  332 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~--G~-~i~A~-~VI~  332 (486)
                      .+|.++|.+.++..|++|+++++|++|..+  ++++++|+..+  ++ .+.++ .||+
T Consensus       214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~--~g~V~GV~~~~~~~~~~i~a~k~VVl  269 (574)
T PRK12842        214 NALAARLAKSALDLGIPILTGTPARELLTE--GGRVVGARVIDAGGERRITARRGVVL  269 (574)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEee--CCEEEEEEEEcCCceEEEEeCCEEEE
Confidence            578999999999999999999999999887  78888887643  33 37786 5764

>PRK07831 short chain dehydrogenase; Provisional

Probab=85.66  E-value=1.5  Score=41.91  Aligned_cols=34  Identities=21%  Similarity=0.134  Sum_probs=28.3

Q ss_pred             cccEEEECC-C-hhHHHHHHHHhhCCCcEEEEccCC
Q 011414           22 AFDLIVIGT-G-LPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        22 ~~DViIIGa-G-l~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ..-++|.|+ | --|..+|..|++.|++|.+++++.
T Consensus        17 ~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~   52 (262)
T PRK07831         17 GKVVLVTAAAGTGIGSATARRALEEGARVVISDIHE   52 (262)
T ss_pred             CCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCH
Confidence            356999997 5 478999999999999999988753

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=85.61  E-value=0.97  Score=46.43  Aligned_cols=34  Identities=18%  Similarity=0.204  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      -.|+|+|+|.-|+.+|..|...|.+|+++|.++.
T Consensus       203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~  236 (413)
T cd00401         203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI  236 (413)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence            4799999999999999999999999999998753

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=85.45  E-value=2.8  Score=42.50  Aligned_cols=34  Identities=26%  Similarity=0.388  Sum_probs=32.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCC-CcEEEEccCCCC
Q 011414           24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNPFY   57 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G-~~VlvlE~~~~~   57 (486)
                      ||+|||||++||++|..|+++| ++|+|+|+++.+
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~   35 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPS   35 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCcc
Confidence            8999999999999999999999 999999998654

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=85.35  E-value=1.5  Score=38.21  Aligned_cols=34  Identities=12%  Similarity=0.299  Sum_probs=30.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCC-CcEEEEccCC
Q 011414           22 AFDLIVIGTGLPESVISAAASASG-KSVLHLDPNP   55 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G-~~VlvlE~~~   55 (486)
                      ...++|||+|..|...|..|++.| ++|.+++++.
T Consensus        19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~   53 (155)
T cd01065          19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL   53 (155)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence            356999999999999999999996 8999999864

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=85.34  E-value=1  Score=44.12  Aligned_cols=32  Identities=28%  Similarity=0.382  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      .|.|||.|.-|...|..|++.|++|.+++++.
T Consensus         4 ~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~   35 (296)
T PRK11559          4 KVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNP   35 (296)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            69999999999999999999999999999874

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=85.34  E-value=0.95  Score=46.84  Aligned_cols=34  Identities=21%  Similarity=0.302  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      -.|.|||-|.+|.++|..|.+.|++|...|.+..
T Consensus         4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~   37 (418)
T PRK00683          4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLE   37 (418)
T ss_pred             CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            3699999999999999999999999999997653

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=85.15  E-value=0.86  Score=50.65  Aligned_cols=34  Identities=26%  Similarity=0.360  Sum_probs=31.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      ..|.|||+|.-|.-.|..++.+|++|.++|.++.
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~  369 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPA  369 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHH
Confidence            3599999999999999999999999999998764

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=85.14  E-value=1.1  Score=43.95  Aligned_cols=32  Identities=28%  Similarity=0.327  Sum_probs=30.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (486)
                      ..|.|||+|.-|.-.|..++.+|++|.++|.+
T Consensus         4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~   35 (307)
T COG1250           4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDIS   35 (307)
T ss_pred             cEEEEEcccchhHHHHHHHhhcCCceEEEeCC
Confidence            46899999999999999999988999999998

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=85.06  E-value=2.6  Score=43.00  Aligned_cols=33  Identities=21%  Similarity=0.389  Sum_probs=31.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (486)
                      .+||+|||||++||++|+.|+++|++|+|+|++
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~   34 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA   34 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence            479999999999999999999999999999997

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=84.93  E-value=1.2  Score=44.55  Aligned_cols=33  Identities=18%  Similarity=0.289  Sum_probs=30.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC-cEEEEccC
Q 011414           22 AFDLIVIGTGLPESVISAAASASGK-SVLHLDPN   54 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~-~VlvlE~~   54 (486)
                      ...|+|||+|--|+.+|..|+++|. ++.++|..
T Consensus        24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D   57 (339)
T PRK07688         24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD   57 (339)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            4579999999999999999999998 89999984

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=84.93  E-value=0.88  Score=44.95  Aligned_cols=33  Identities=21%  Similarity=0.362  Sum_probs=29.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      .+.|+|+|--|+..|++|+++|..|+++=|.++
T Consensus         2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~   34 (307)
T COG1893           2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSRR   34 (307)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence            489999999999999999999988888877664

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=84.93  E-value=1.6  Score=39.89  Aligned_cols=34  Identities=15%  Similarity=0.218  Sum_probs=29.9

Q ss_pred             CcccEEEECC-ChhHHHHHHHHhhCCCcEEEEccC
Q 011414           21 TAFDLIVIGT-GLPESVISAAASASGKSVLHLDPN   54 (486)
Q Consensus        21 ~~~DViIIGa-Gl~GL~aA~~La~~G~~VlvlE~~   54 (486)
                      ....++|+|+ |-.|..+|..|++.|++|.++.|+
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~   61 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD   61 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            3457999996 999999999999999999999876

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=84.88  E-value=3.1  Score=40.18  Aligned_cols=51  Identities=12%  Similarity=0.129  Sum_probs=39.0

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeC-CCcEEEcCEEEE
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQDILSHKLVL  332 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~-~G~~i~A~~VI~  332 (486)
                      ..+-+.|.+.++..|.++++++.|+++..+  ++++ .|.+. ++.+++||.||.
T Consensus        91 ~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~--~~~~-~~~~~~~~~~~~a~~vv~  142 (295)
T TIGR02032        91 DAFDEQLAERAQEAGAELRLGTTVLDVEIH--DDRV-VVIVRGGEGTVTAKIVIG  142 (295)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCcEEeeEEEe--CCEE-EEEEcCccEEEEeCEEEE
Confidence            457788888888999999999999999876  4443 34333 456799999884

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=84.87  E-value=3  Score=42.61  Aligned_cols=35  Identities=20%  Similarity=0.338  Sum_probs=32.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCC--CcEEEEccCCC
Q 011414           22 AFDLIVIGTGLPESVISAAASASG--KSVLHLDPNPF   56 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G--~~VlvlE~~~~   56 (486)
                      .|||+|||||++||++|..|+++|  ++|+|+|+++.
T Consensus         1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~   37 (403)
T PRK07333          1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA   37 (403)
T ss_pred             CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence            389999999999999999999996  99999999864

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=84.82  E-value=1.2  Score=43.44  Aligned_cols=33  Identities=18%  Similarity=0.313  Sum_probs=30.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-cEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~-~VlvlE~~~   55 (486)
                      ..|+|||+|-+|.++|..|++.|. +|.|++|+.
T Consensus       128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~  161 (284)
T PRK12549        128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP  161 (284)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            479999999999999999999996 799999874

>PRK10015 oxidoreductase; Provisional

Probab=84.79  E-value=3.2  Score=43.10  Aligned_cols=50  Identities=16%  Similarity=0.274  Sum_probs=39.8

Q ss_pred             hHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE
Q 011414          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (486)
Q Consensus       280 ~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~  332 (486)
                      .+-+.|.+.++..|++++.++.|+.|..+  ++++++|+. ++++++|+.||.
T Consensus       109 ~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~--~~~v~~v~~-~~~~i~A~~VI~  158 (429)
T PRK10015        109 RLDPWLMEQAEQAGAQFIPGVRVDALVRE--GNKVTGVQA-GDDILEANVVIL  158 (429)
T ss_pred             HHHHHHHHHHHHcCCEEECCcEEEEEEEe--CCEEEEEEe-CCeEEECCEEEE
Confidence            45566778888899999999999999776  567667764 566899999984

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=84.66  E-value=1.2  Score=43.75  Aligned_cols=34  Identities=18%  Similarity=0.230  Sum_probs=31.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ...|.|||.|-.|..+|..|.+.|.+|.+++++.
T Consensus       152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~  185 (296)
T PRK08306        152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS  185 (296)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4579999999999999999999999999999984

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=84.59  E-value=3.1  Score=44.83  Aligned_cols=52  Identities=25%  Similarity=0.387  Sum_probs=41.5

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeC-CCc--EEEcCE-EEE
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQ--DILSHK-LVL  332 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~-~G~--~i~A~~-VI~  332 (486)
                      ..+.+.|.+.++..|++++++++|++|..+  ++++++|+.. +|+  .++|++ ||+
T Consensus       208 ~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~--~g~v~Gv~~~~~g~~~~i~A~~~VIl  263 (557)
T PRK07843        208 QALAAGLRIGLQRAGVPVLLNTPLTDLYVE--DGRVTGVHAAESGEPQLIRARRGVIL  263 (557)
T ss_pred             HHHHHHHHHHHHcCCCEEEeCCEEEEEEEe--CCEEEEEEEEeCCcEEEEEeceeEEE
Confidence            467888888888999999999999999876  6788888763 454  478864 774

>PLN02256 arogenate dehydrogenase

Probab=84.48  E-value=1.4  Score=43.52  Aligned_cols=34  Identities=15%  Similarity=0.244  Sum_probs=30.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ...|.|||.|.-|...|..|++.|++|.+++++.
T Consensus        36 ~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~   69 (304)
T PLN02256         36 KLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSD   69 (304)
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECcc
Confidence            3579999999999999999999999999999875

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=84.46  E-value=1.6  Score=43.46  Aligned_cols=35  Identities=17%  Similarity=0.127  Sum_probs=31.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-cEEEEccCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFY   57 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~-~VlvlE~~~~~   57 (486)
                      ..|.|||+|..|...|..|+..|. +|.++|.+...
T Consensus         7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~   42 (321)
T PTZ00082          7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNI   42 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCch
Confidence            579999999999999999999996 89999998764

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=84.34  E-value=1.3  Score=47.07  Aligned_cols=33  Identities=15%  Similarity=0.183  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ..|.|+|-|.+|+++|..|.+.|++|.+.|.+.
T Consensus         8 ~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~   40 (498)
T PRK02006          8 PMVLVLGLGESGLAMARWCARHGARLRVADTRE   40 (498)
T ss_pred             CEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence            359999999999999999999999999999865

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=84.22  E-value=1  Score=49.90  Aligned_cols=34  Identities=26%  Similarity=0.313  Sum_probs=30.4

Q ss_pred             ccEEEECCChhHHHHHHHHh-hCCCcEEEEccCCC
Q 011414           23 FDLIVIGTGLPESVISAAAS-ASGKSVLHLDPNPF   56 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La-~~G~~VlvlE~~~~   56 (486)
                      ..|.|||+|..|...|..++ ++|++|.++|.++.
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~  339 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQ  339 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHH
Confidence            35999999999999999998 68999999999853

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=84.21  E-value=1  Score=43.82  Aligned_cols=42  Identities=17%  Similarity=0.218  Sum_probs=36.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcccc
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~   64 (486)
                      .-|+|||.|+-|-+.|..|.++|+.|.++.+....+......
T Consensus         4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~   45 (279)
T COG0287           4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAAL   45 (279)
T ss_pred             cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHh
Confidence            469999999999999999999999999999988775544443

>PRK07045 putative monooxygenase; Reviewed

Probab=84.11  E-value=3.4  Score=42.13  Aligned_cols=55  Identities=16%  Similarity=0.268  Sum_probs=42.8

Q ss_pred             chHHHHHHHHHH-HcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEE-ECC
Q 011414          279 GELPQAFCRRAA-VKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDP  334 (486)
Q Consensus       279 ~~L~qal~r~~~-~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI-~~p  334 (486)
                      ..|-+.|.+.++ ..|.++++++.|+.|..++ ++.++.|++++|++++||.|| ++.
T Consensus       106 ~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~-~~~~~~v~~~~g~~~~~~~vIgADG  162 (388)
T PRK07045        106 EQLRRLLLAKLDGLPNVRLRFETSIERIERDA-DGTVTSVTLSDGERVAPTVLVGADG  162 (388)
T ss_pred             HHHHHHHHHHHhcCCCeeEEeCCEEEEEEECC-CCcEEEEEeCCCCEEECCEEEECCC
Confidence            357777777765 4678999999999998762 555567888899999999999 443

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=84.05  E-value=1.1  Score=46.91  Aligned_cols=31  Identities=16%  Similarity=0.102  Sum_probs=28.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (486)
                      ..|.|+|.|.+|.++|..|.+ |.+|+|.|.+
T Consensus         7 ~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~   37 (454)
T PRK01368          7 QKIGVFGLGKTGISVYEELQN-KYDVIVYDDL   37 (454)
T ss_pred             CEEEEEeecHHHHHHHHHHhC-CCEEEEECCC
Confidence            369999999999999999995 9999999965

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=84.02  E-value=4  Score=44.38  Aligned_cols=43  Identities=19%  Similarity=0.213  Sum_probs=38.1

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (486)
Q Consensus        18 ~~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (486)
                      +...++||||||+|++||.||+.+++.|.+|+|+||....||.
T Consensus         8 ~~~~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~   50 (598)
T PRK09078          8 IIDHKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSH   50 (598)
T ss_pred             ccccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcc
Confidence            3445799999999999999999999999999999998776664

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=83.95  E-value=3.5  Score=44.54  Aligned_cols=42  Identities=24%  Similarity=0.264  Sum_probs=37.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (486)
                      ..++||||||+|.+||.||..++++|.+|+|+||....||.+
T Consensus         3 ~~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s   44 (566)
T PRK06452          3 KIEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHS   44 (566)
T ss_pred             cccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcc
Confidence            356899999999999999999999999999999998777743

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=83.89  E-value=4.3  Score=44.03  Aligned_cols=59  Identities=12%  Similarity=0.139  Sum_probs=45.6

Q ss_pred             eecCCc-chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEe---CCCc--EEEcCEEEE
Q 011414          273 YPIYGQ-GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (486)
Q Consensus       273 ~p~gG~-~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~--~i~A~~VI~  332 (486)
                      ++..++ ..|.++|.+.+...|.++++++.|+++..+ ++|+++||..   .+|+  .++|+.||+
T Consensus       136 ~~~~~~G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~-~~g~v~Gv~~~~~~~g~~~~i~AkaVIL  200 (588)
T PRK08958        136 AAADRTGHALLHTLYQQNLKNHTTIFSEWYALDLVKN-QDGAVVGCTAICIETGEVVYFKARATVL  200 (588)
T ss_pred             ecCCCCHHHHHHHHHHHhhhcCCEEEeCcEEEEEEEC-CCCEEEEEEEEEcCCCcEEEEEcCeEEE
Confidence            343344 478899988888899999999999999875 2688999874   3565  478999985

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=83.86  E-value=1.1  Score=46.92  Aligned_cols=34  Identities=12%  Similarity=0.092  Sum_probs=31.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      .+|-|||.|.-|...|..|+++|++|.+++++..
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~   35 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYE   35 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            4799999999999999999999999999998654

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=83.84  E-value=3.4  Score=42.32  Aligned_cols=35  Identities=37%  Similarity=0.621  Sum_probs=33.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      ++||+|||||++||++|+.|+++|++|+|+|+++.
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~   36 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPL   36 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCc
Confidence            47999999999999999999999999999999874

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=83.79  E-value=1.8  Score=43.01  Aligned_cols=35  Identities=20%  Similarity=0.283  Sum_probs=31.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCC--cEEEEccCC
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~--~VlvlE~~~   55 (486)
                      ....|.|||+|..|.++|..|+..|.  .+.++|.+.
T Consensus         5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~   41 (315)
T PRK00066          5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK   41 (315)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            34689999999999999999999998  799999864

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=83.67  E-value=1.1  Score=47.02  Aligned_cols=34  Identities=15%  Similarity=0.034  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHH-HHHHHhhCCCcEEEEccCCC
Q 011414           23 FDLIVIGTGLPESV-ISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        23 ~DViIIGaGl~GL~-aA~~La~~G~~VlvlE~~~~   56 (486)
                      ..|.|||.|-+|++ +|..|.+.|++|.+.|.+..
T Consensus         8 ~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~   42 (461)
T PRK00421          8 KRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES   42 (461)
T ss_pred             CEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence            35999999999999 69999999999999998765

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=83.58  E-value=4.1  Score=44.51  Aligned_cols=60  Identities=28%  Similarity=0.408  Sum_probs=45.2

Q ss_pred             eecCCc---chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEe---CCCc--EEEcCEEEE
Q 011414          273 YPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (486)
Q Consensus       273 ~p~gG~---~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~--~i~A~~VI~  332 (486)
                      ++..|.   ..+..+|.+.++..|++++.+++|.+|..++.++++++|++   .+|+  +++|+.||.
T Consensus       223 ~~~Dg~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVn  290 (627)
T PLN02464        223 VYYDGQMNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVN  290 (627)
T ss_pred             EecCcEEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEE
Confidence            444453   48889999999999999999999999987521356777765   2444  579999984

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=83.58  E-value=1.4  Score=43.45  Aligned_cols=33  Identities=24%  Similarity=0.309  Sum_probs=29.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC--cEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~--~VlvlE~~~   55 (486)
                      ..|.|||+|..|...|..|++.|.  +|.+++++.
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~   41 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA   41 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence            369999999999999999999995  899999874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	486
1ltx_R	650	Structure Of Rab Escort Protein-1 In Complex With R		6e-31
1vg0_A	650	The Crystal Structures Of The Rep-1 Protein In Comp		1e-30
1d5t_A	433	Guanine Nucleotide Dissociation Inhibitor, Alpha-Is		6e-30
1lv0_A	449	Crystal Structure Of The Rab Effector Guanine Nucle		7e-30
1gnd_A	447	Guanine Nucleotide Dissociation Inhibitor, Alpha-Is		7e-30
1ukv_G	453	Structure Of Rabgdp-Dissociation Inhibitor In Compl		2e-29
3cph_G	451	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		3e-29
3p1w_A	475	Crystal Structure Of Rab Gdi From Plasmodium Falcip		9e-23

>pdb|1LTX|R Chain R, Structure Of Rab Escort Protein-1 In Complex With Rab Geranylgeranyl Transferase And Isoprenoid Length = 650

Iteration: 1
 Score =  132 bits (331), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 107/371 (28%), Positives = 168/371 (45%), Gaps = 45/371 (12%)
Query: 106 RNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIF 165
           R FN+D+   ++L+     +DL++KS  S Y EFK+I        +  +  VP SRA +F
Sbjct: 222 RRFNIDLVS-KLLYSRGLLIDLLIKSNVSRYAEFKNITRILAF-REGTVEQVPCSRADVF 279
Query: 166 KDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS 225
             K L ++EK  LM+F      +    E   +  R  E    + F+E+L   KL   ++ 
Sbjct: 280 NSKQLTMVEKRMLMKFLTFCVEY----EEHPDEYRAYE---GTTFSEYLKTQKLTPNLQY 332
Query: 226 IVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAF 285
            VL++IAM       SE    T DG+     +   +GR+ N     ++P+YGQGELPQ F
Sbjct: 333 FVLHSIAM------TSETTSCTVDGLKATKKFLQCLGRYGNT--PFLFPLYGQGELPQCF 384
Query: 286 CRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASS 345
           CR  AV G +Y LR  V  L+ D+ S   K V    GQ I+S   +++ S+    + +  
Sbjct: 385 CRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSENTCSRV 444
Query: 346 HQQLQESFQAFSLSDNKGKVARGICITRSS-LKPDLSNFLVIFPPRSLFPEQVTSIRVLQ 404
             +               +++R + IT  S LK D    + I    +  P    ++RV++
Sbjct: 445 QYR---------------QISRAVLITDGSVLKTDADQQVSILTVPAEEPGSF-AVRVIE 488
Query: 405 LGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEE 464
           L  +   C  G ++++ + +       K         +QKL    T   +   Q E    
Sbjct: 489 LCSSTMTCMKGTYLVHLTCM-----SSKTAREDLERVVQKLFTPYTEIEAENEQVE---- 539
Query: 465 AKPTLLWSALY 475
            KP LLW ALY
Sbjct: 540 -KPRLLW-ALY 548

>pdb|1VG0|A Chain A, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 650

Iteration: 1
 Score =  130 bits (328), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 106/371 (28%), Positives = 168/371 (45%), Gaps = 45/371 (12%)
Query: 106 RNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIF 165
           R FN+D+   ++L+     +DL++KS  S Y EFK+I        +  +  VP SRA +F
Sbjct: 222 RRFNIDLVS-KLLYSRGLLIDLLIKSNVSRYAEFKNITRILAF-REGTVEQVPCSRADVF 279
Query: 166 KDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS 225
             K L ++EK  LM+F      +    E   +  R  E    + F+E+L   KL   ++ 
Sbjct: 280 NSKQLTMVEKRMLMKFLTFCVEY----EEHPDEYRAYE---GTTFSEYLKTQKLTPNLQY 332
Query: 226 IVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAF 285
            VL++IAM       SE    T DG+     +   +GR+ N     ++P+YGQGELPQ F
Sbjct: 333 FVLHSIAM------TSETTSCTVDGLKATKKFLQCLGRYGNT--PFLFPLYGQGELPQCF 384
Query: 286 CRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASS 345
           CR  AV G +Y LR  V  L+ D+ S   K V    GQ I+S   +++ S+    + +  
Sbjct: 385 CRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSENTCSRV 444
Query: 346 HQQLQESFQAFSLSDNKGKVARGICITRSS-LKPDLSNFLVIFPPRSLFPEQVTSIRVLQ 404
             +               +++R + IT  S L+ D    + I    +  P    ++RV++
Sbjct: 445 QYR---------------QISRAVLITDGSVLRTDADQQVSILTVPAEEPGSF-AVRVIE 488
Query: 405 LGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEE 464
           L  +   C  G ++++ + +       K         +QKL    T   +   Q E    
Sbjct: 489 LCSSTMTCMKGTYLVHLTCM-----SSKTAREDLERVVQKLFTPYTEIEAENEQVE---- 539
Query: 465 AKPTLLWSALY 475
            KP LLW ALY
Sbjct: 540 -KPRLLW-ALY 548

>pdb|1D5T|A Chain A, Guanine Nucleotide Dissociation Inhibitor, Alpha-Isoform Length = 433

Iteration: 1
 Score =  128 bits (322), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 100/370 (27%), Positives = 175/370 (47%), Gaps = 56/370 (15%)
Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
           +D+IV+GTGL E ++S   S +GK VLH+D NP+YG   SS+             TP   
Sbjct: 7   YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSI-------------TPL-- 51
Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
             + LY   ++       + +  R++N+D+  P+ L      V ++L +  + YL+FK +
Sbjct: 52  --EELYKRFQLLEGPPETMGRG-RDWNVDLI-PKFLMANGQLVKMLLYTEVTRYLDFKVV 107
Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
           + +F+     K+  VP +         +G+ EK +  +F   V         +EN+ +  
Sbjct: 108 EGSFVYKG-GKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANF------DENDPKTF 160
Query: 203 E--EDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260
           E  +  ++   +   K  L   +     +A+A+   D  + +  L+T   INR+ LY+ S
Sbjct: 161 EGVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLET---INRIKLYSES 217
Query: 261 IGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320
           + R+  +    +YP+YG GELPQ F R +A+ G  Y+L  PV  ++ +  +G   GV+ +
Sbjct: 218 LARYGKS--PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVK-S 272
Query: 321 SGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK--P 378
            G+     +L+ DPS+ VP  +  +                 G+V R ICI    +K   
Sbjct: 273 EGEVARCKQLICDPSY-VPDRVRKA-----------------GQVIRIICILSHPIKNTN 314
Query: 379 DLSNFLVIFP 388
           D ++  +I P
Sbjct: 315 DANSCQIIIP 324

>pdb|1LV0|A Chain A, Crystal Structure Of The Rab Effector Guanine Nucleotide Dissociation Inhibitor (Gdi) In Complex With A Geranylgeranyl (Gg) Peptide Length = 449

Iteration: 1
 Score =  128 bits (321), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 100/370 (27%), Positives = 175/370 (47%), Gaps = 56/370 (15%)
Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
           +D+IV+GTGL E ++S   S +GK VLH+D NP+YG   SS+             TP   
Sbjct: 7   YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSI-------------TPL-- 51
Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
             + LY   ++       + +  R++N+D+  P+ L      V ++L +  + YL+FK +
Sbjct: 52  --EELYKRFQLLEGPPETMGRG-RDWNVDLI-PKFLMANGQLVKMLLYTEVTRYLDFKVV 107
Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
           + +F+     K+  VP +         +G+ EK +  +F   V         +EN+ +  
Sbjct: 108 EGSFVYKG-GKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANF------DENDPKTF 160
Query: 203 E--EDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260
           E  +  ++   +   K  L   +     +A+A+   D  + +  L+T   INR+ LY+ S
Sbjct: 161 EGVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLET---INRIKLYSES 217
Query: 261 IGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320
           + R+  +    +YP+YG GELPQ F R +A+ G  Y+L  PV  ++ +  +G   GV+ +
Sbjct: 218 LARYGKS--PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVK-S 272
Query: 321 SGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK--P 378
            G+     +L+ DPS+ VP  +  +                 G+V R ICI    +K   
Sbjct: 273 EGEVARCKQLICDPSY-VPDRVRKA-----------------GQVIRIICILSHPIKNTN 314
Query: 379 DLSNFLVIFP 388
           D ++  +I P
Sbjct: 315 DANSCQIIIP 324

>pdb|1GND|A Chain A, Guanine Nucleotide Dissociation Inhibitor, Alpha-Isoform Length = 447

Iteration: 1
 Score =  128 bits (321), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 100/370 (27%), Positives = 175/370 (47%), Gaps = 56/370 (15%)
Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
           +D+IV+GTGL E ++S   S +GK VLH+D NP+YG   SS+             TP   
Sbjct: 5   YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSI-------------TPL-- 49
Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
             + LY   ++       + +  R++N+D+  P+ L      V ++L +  + YL+FK +
Sbjct: 50  --EELYKRFQLLEGPPETMGRG-RDWNVDLI-PKFLMANGQLVKMLLYTEVTRYLDFKVV 105
Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
           + +F+     K+  VP +         +G+ EK +  +F   V         +EN+ +  
Sbjct: 106 EGSFVYKG-GKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANF------DENDPKTF 158
Query: 203 E--EDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260
           E  +  ++   +   K  L   +     +A+A+   D  + +  L+T   INR+ LY+ S
Sbjct: 159 EGVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLET---INRIKLYSES 215
Query: 261 IGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320
           + R+  +    +YP+YG GELPQ F R +A+ G  Y+L  PV  ++ +  +G   GV+ +
Sbjct: 216 LARYGKS--PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVK-S 270
Query: 321 SGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK--P 378
            G+     +L+ DPS+ VP  +  +                 G+V R ICI    +K   
Sbjct: 271 EGEVARCKQLICDPSY-VPDRVRKA-----------------GQVIRIICILSHPIKNTN 312
Query: 379 DLSNFLVIFP 388
           D ++  +I P
Sbjct: 313 DANSCQIIIP 322

>pdb|1UKV|G Chain G, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 453

Iteration: 1
 Score =  126 bits (317), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/408 (23%), Positives = 185/408 (45%), Gaps = 48/408 (11%)
Query: 21  TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPS 80
           T +D+IV+GTG+ E ++S   S  GK VLH+D    YG   +S++++ L           
Sbjct: 10  TDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQ----- 64
Query: 81  SVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFK 140
               +P+  +   S +         R++N+D+  P+ L       ++++ +  + Y++FK
Sbjct: 65  ----NPISKEERESKFGKD------RDWNVDLI-PKFLMANGELTNILIHTDVTRYVDFK 113
Query: 141 SIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVR 200
            +  +++     K+  VP +         +G+ EK ++ +F + +  +   D S    + 
Sbjct: 114 QVSGSYVF-KQGKIYKVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLD 172
Query: 201 ISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260
           + +  +D    E   K  L +  K  + +A+A+   D  + +     R    R+ LY  S
Sbjct: 173 LDKNTMD----EVYYKFGLGNSTKEFIGHAMALWTNDDYLQQ---PARPSFERILLYCQS 225
Query: 261 IGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320
           + R+  +    +YP+YG GELPQ F R +A+ G  Y+L  P+  +L  +++G ++GV+  
Sbjct: 226 VARYGKS--PYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTK 283
Query: 321 SGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDL 380
            G    +  ++ DP++  P    S+ Q                +V R ICI    + P+ 
Sbjct: 284 LGT-FKAPLVIADPTY-FPEKCKSTGQ----------------RVIRAICILNHPV-PNT 324
Query: 381 SNF--LVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCD 426
           SN   L I  P+S    + + I V  +     VC  G ++   S + +
Sbjct: 325 SNADSLQIIIPQSQLGRK-SDIYVAIVSDAHNVCSKGHYLAIISTIIE 371

>pdb|3CPH|G Chain G, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 451

Iteration: 1
 Score =  126 bits (317), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 97/408 (23%), Positives = 185/408 (45%), Gaps = 48/408 (11%)
Query: 21  TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPS 80
           T +D+IV+GTG+ E ++S   S  GK VLH+D    YG   +S++++ L           
Sbjct: 8   TDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQ----- 62
Query: 81  SVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFK 140
               +P+  +   S +         R++N+D+  P+ L       ++++ +  + Y++FK
Sbjct: 63  ----NPISKEERESKFGKD------RDWNVDLI-PKFLMANGELTNILIHTDVTRYVDFK 111
Query: 141 SIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVR 200
            +  +++     K+  VP +         +G+ EK ++ +F + +  +   D S    + 
Sbjct: 112 QVSGSYVF-KQGKIYKVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLD 170
Query: 201 ISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260
           + +  +D    E   K  L +  K  + +A+A+   D  + +     R    R+ LY  S
Sbjct: 171 LDKNTMD----EVYYKFGLGNSTKEFIGHAMALWTNDDYLQQ---PARPSFERILLYCQS 223
Query: 261 IGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320
           + R+  +    +YP+YG GELPQ F R +A+ G  Y+L  P+  +L  +++G ++GV+  
Sbjct: 224 VARYGKS--PYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTK 281
Query: 321 SGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDL 380
            G    +  ++ DP++  P    S+ Q                +V R ICI    + P+ 
Sbjct: 282 LGT-FKAPLVIADPTY-FPEKCKSTGQ----------------RVIRAICILNHPV-PNT 322
Query: 381 SNF--LVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCD 426
           SN   L I  P+S    + + I V  +     VC  G ++   S + +
Sbjct: 323 SNADSLQIIIPQSQLGRK-SDIYVAIVSDAHNVCSKGHYLAIISTIIE 369

>pdb|3P1W|A Chain A, Crystal Structure Of Rab Gdi From Plasmodium Falciparum, Pfl2060c Length = 475

Iteration: 1
 Score =  104 bits (260), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 163/361 (45%), Gaps = 61/361 (16%)
Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
           +D+I++GTGL E ++S   S  GK +L LD NP+YG   +SL   +LT+  N+   P   
Sbjct: 21  YDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASL---NLTNLYNTFK-PKEN 76
Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
            P         S Y         R++N+D+  P+ +    + V ++ K+  ++YLE+  +
Sbjct: 77  IP---------SKYGEN------RHWNVDLI-PKFILVGGNLVKILKKTRVTNYLEWLVV 120
Query: 143 DATFM--------LDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDES 194
           + +++        L ++  +  VP +         L LMEKN+   F++ V         
Sbjct: 121 EGSYVYQHQKKGFLTSEKFIHKVPATDMEALVSPLLSLMEKNRCKNFYQYVS-------E 173
Query: 195 EENNVRISEEDLDSPFA----EFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDG 250
            + N R + ++LD P+     E      L       + +A+A+   D  + +    T   
Sbjct: 174 WDANKRNTWDNLD-PYKLTMLEIYKHFNLCQLTIDFLGHAVALYLNDDYLKQPAYLT--- 229
Query: 251 INRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQN 310
           + R+ LY  SI  F  +    IYP+YG G +P+ F R  A+ G  ++L   V+  + D +
Sbjct: 230 LERIKLYMQSISAFGKS--PFIYPLYGLGGIPEGFSRMCAINGGTFMLNKNVVDFVFDDD 287
Query: 311 SGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGIC 370
           +    G++ + G+     K++ DPS+ +          L+   +        G+V R IC
Sbjct: 288 N-KVCGIKSSDGEIAYCDKVICDPSYVM---------HLKNKIKKI------GQVIRCIC 331
Query: 371 I 371
           I
Sbjct: 332 I 332

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	486
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	6e-81
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	1e-76
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	4e-74
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	1e-15
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	3e-70
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* Length = 453

 Score =  257 bits (658), Expect = 6e-81
 Identities = 93/428 (21%), Positives = 177/428 (41%), Gaps = 49/428 (11%)

Query: 20  PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTP 79
            T +D+IV+GTG+ E ++S   S  GK VLH+D    YG   +S++++ L      +   
Sbjct: 9   DTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPIS 68

Query: 80  SSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEF 139
                                     R++N+D+  P+ L       ++++ +  + Y++F
Sbjct: 69  KEERESKFG---------------KDRDWNVDL-IPKFLMANGELTNILIHTDVTRYVDF 112

Query: 140 KSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNV 199
           K +  +++     K+  VP +         +G+ EK ++ +F + +  +   D S    +
Sbjct: 113 KQVSGSYVFK-QGKIYKVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGL 171

Query: 200 RISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNS 259
            + +        E   K  L +  K  + +A+A+   D  + +     R    R+ LY  
Sbjct: 172 DLDKN----TMDEVYYKFGLGNSTKEFIGHAMALWTNDDYLQQ---PARPSFERILLYCQ 224

Query: 260 SIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL 319
           S+ R+       +YP+YG GELPQ F R +A+ G  Y+L  P+  +L  +++G ++GV+ 
Sbjct: 225 SVARYGK--SPYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVK- 281

Query: 320 ASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP- 378
                  +  ++ DP++  P    S+ Q                +V R ICI    +   
Sbjct: 282 TKLGTFKAPLVIADPTY-FPEKCKSTGQ----------------RVIRAICILNHPVPNT 324

Query: 379 -DLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHA 437
            +  +  +I P   L  +    I V  +     VC  G ++   S    E ++    L  
Sbjct: 325 SNADSLQIIIPQSQLGRKS--DIYVAIVSDAHNVCSKGHYLAIIST-IIETDKPHIELEP 381

Query: 438 ALSALQKL 445
           A   L  +
Sbjct: 382 AFKLLGPI 389

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} Length = 475

 Score =  247 bits (630), Expect = 1e-76
 Identities = 96/484 (19%), Positives = 183/484 (37%), Gaps = 77/484 (15%)

Query: 14  PYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFL 73
                +   +D+I++GTGL E ++S   S  GK +L LD NP+YG   +SL++ +L +  
Sbjct: 12  ENLYFQGEHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASLNLTNLYNTF 71

Query: 74  NSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGA 133
                  S                        R++N+D+  P+ +    + V ++ K+  
Sbjct: 72  KPKENIPSKYG-------------------ENRHWNVDL-IPKFILVGGNLVKILKKTRV 111

Query: 134 SHYLEFKSIDATFM--------LDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLV 185
           ++YLE+  ++ +++        L ++  +  VP +         L LMEKN+   F++ V
Sbjct: 112 TNYLEWLVVEGSYVYQHQKKGFLTSEKFIHKVPATDMEALVSPLLSLMEKNRCKNFYQYV 171

Query: 186 QGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVL 245
               +   +  +N+    +       E      L       + +A+A+   D  + +   
Sbjct: 172 SEWDANKRNTWDNL----DPYKLTMLEIYKHFNLCQLTIDFLGHAVALYLNDDYLKQ--- 224

Query: 246 KTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISL 305
                + R+ LY  SI  F       IYP+YG G +P+ F R  A+ G  ++L   V+  
Sbjct: 225 PAYLTLERIKLYMQSISAFGK--SPFIYPLYGLGGIPEGFSRMCAINGGTFMLNKNVVDF 282

Query: 306 LTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKV 365
           + D +     G++ + G+     K++ DPS+ +                  +     G+V
Sbjct: 283 VFDDD-NKVCGIKSSDGEIAYCDKVICDPSYVMHLK---------------NKIKKIGQV 326

Query: 366 ARGICITRSSLKP--DLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSA 423
            R ICI  + +      ++  +I P   L  +    I +  +     V   G ++   SA
Sbjct: 327 IRCICILSNPIPETNQTNSCQIIIPQNQLNRKS--DIYINLVSFQHGVTLKGKYIAIVSA 384

Query: 424 LCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEEAKPTLLWSALY-IQDLSLS 482
              E N   K +   L  L  +                  E K   +             
Sbjct: 385 TV-ETNNPIKEIEKPLELLGTI------------------EEKFVKISDLYVSTSKKPAD 425

Query: 483 HVFI 486
           ++F+
Sbjct: 426 NIFV 429

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R* Length = 650

 Score =  245 bits (625), Expect = 4e-74
 Identities = 100/455 (21%), Positives = 176/455 (38%), Gaps = 56/455 (12%)

Query: 31  GLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSD 90
            +P          S   V   +      +  +  S  + +  +      +        + 
Sbjct: 155 EIPAEQSQCPGPESSPEVNDAEATGKKENSDAKSSTEEPSENVPKVQDNTETPKKNRITY 214

Query: 91  VEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDA 150
            +I            R FN+D+   ++L+     +DL++KS  S Y EFK+I        
Sbjct: 215 SQIIK--------EGRRFNIDLV-SKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFR- 264

Query: 151 DAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPF 210
           +  +  VP SRA +F  K L ++EK  LM+F      +    +              + F
Sbjct: 265 EGTVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCVEYEEHPDEYR-------AYEGTTF 317

Query: 211 AEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGA 270
           +E+L   KL   ++  VL++IAM             T DG+     +   +GR+ N    
Sbjct: 318 SEYLKTQKLTPNLQYFVLHSIAMTSETTS------CTVDGLKATKKFLQCLGRYGNT--P 369

Query: 271 LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKL 330
            ++P+YGQGELPQ FCR  AV G +Y LR  V  L+ D+ S   K V    GQ I+S   
Sbjct: 370 FLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHF 429

Query: 331 VLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP---DLSNFLVIF 387
           +++ S+    + +                    +++R + IT  S+     D    ++  
Sbjct: 430 IIEDSYLSENTCSRV---------------QYRQISRAVLITDGSVLRTDADQQVSILTV 474

Query: 388 PPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLV 447
           P        V   RV++L  +   C  G ++++ +  C      ++ L   +  L     
Sbjct: 475 PAEEPGSFAV---RVIELCSSTMTCMKGTYLVHLT--CMSSKTAREDLERVVQKL----- 524

Query: 448 TGTAGNSSTAQSEDMEEAKPTLLWSALYIQDLSLS 482
                  +  ++E+ +  KP LLW+  +    S  
Sbjct: 525 ---FTPYTEIEAENEQVEKPRLLWALYFNMRDSSD 556

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R* Length = 650

 Score = 78.4 bits (192), Expect = 1e-15
 Identities = 50/222 (22%), Positives = 87/222 (39%), Gaps = 30/222 (13%)

Query: 20  PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTP 79
           P+ FD+IVIGTGLPES+I+AA S SG+ VLH+D   +YG +++S S + L  +L  +   
Sbjct: 6   PSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQEN 65

Query: 80  SSVCPD---------------PLYS------DVEISNYASRLLSQHPRNFNLDVSGPRVL 118
           + V  +               PL S       VE+  YAS+ L +              +
Sbjct: 66  NDVVTENSMWQEQILENEEAIPLSSKDKTIQHVEVFCYASQDLHKDVEEAGALQKNHASV 125

Query: 119 FCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL 178
             A  A        +      + +      +  A+    P   ++   + +    +K   
Sbjct: 126 TSAQSAEAAEAAETSCLPTAVEPLSMG-SCEIPAEQSQCPGPESSPEVNDAEATGKKEN- 183

Query: 179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLP 220
                      S  E    NV   +++ ++P    +T  ++ 
Sbjct: 184 -------SDAKSSTEEPSENVPKVQDNTETPKKNRITYSQII 218

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A Length = 433

 Score =  229 bits (584), Expect = 3e-70
 Identities = 102/426 (23%), Positives = 179/426 (42%), Gaps = 55/426 (12%)

Query: 20  PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTP 79
              +D+IV+GTGL E ++S   S +GK VLH+D NP+YG   SS++  +  +        
Sbjct: 4   DEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEG 63

Query: 80  SSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEF 139
                                     R++N+D+  P+ L      V ++L +  + YL+F
Sbjct: 64  PPETM------------------GRGRDWNVDL-IPKFLMANGQLVKMLLYTEVTRYLDF 104

Query: 140 KSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNV 199
           K ++ +F+     K+  VP +         +G+ EK +  +F   V      D       
Sbjct: 105 KVVEGSFVY-KGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTF--- 160

Query: 200 RISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNS 259
               +  ++   +   K  L   +     +A+A+   D  + +      + INR+ LY+ 
Sbjct: 161 -EGVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQ---PCLETINRIKLYSE 216

Query: 260 SIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL 319
           S+ R+       +YP+YG GELPQ F R +A+ G  Y+L  PV  ++ +  +G   GV+ 
Sbjct: 217 SLARYGK--SPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVK- 271

Query: 320 ASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK-- 377
           + G+     +L+ DPS+ VP  +  +                 G+V R ICI    +K  
Sbjct: 272 SEGEVARCKQLICDPSY-VPDRVRKA-----------------GQVIRIICILSHPIKNT 313

Query: 378 PDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHA 437
            D ++  +I P   +  +    I V  +     V   G ++   S    E    +K +  
Sbjct: 314 NDANSCQIIIPQNQVNRKS--DIYVCMISYAHNVAAQGKYIAIASTTV-ETTDPEKEVEP 370

Query: 438 ALSALQ 443
           AL  L+
Sbjct: 371 ALGLLE 376

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.2 bits (137), Expect = 9e-09
 Identities = 69/426 (16%), Positives = 127/426 (29%), Gaps = 119/426 (27%)

Query: 44  SGKSVLHLD-----------PNPFY----GSHFSSLSI----ADLTHFL--NSHSTPSSV 82
           SGK+ + LD               +     +  S  ++      L + +  N  S     
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220

Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNL----DVSGPRVL--FCADHAVDLMLKSGASHY 136
               L     I     RLL   P    L    +V   +    F  + +  ++L +     
Sbjct: 221 SNIKLRIH-SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF--NLSCKILLTT----- 272

Query: 137 LEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKL----VQGH---L 189
             FK +   F+  A     S+      +  D+   L+ K    R   L    +  +   L
Sbjct: 273 -RFKQV-TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330

Query: 190 SLDESEENNVRISEEDLDSP----FAEFLTKMKLPHKIKSIV----------LY-AIAMA 234
           S+         I+E   D        + +   KL   I+S +          ++  +++ 
Sbjct: 331 SI---------IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381

Query: 235 DYDQEVSEYVLK----------TRDGINRLALYNSSIGRFQNALGALIYPIY-------- 276
                +   +L               +N+L  Y S + +        I  IY        
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY-SLVEKQPKESTISIPSIYLELKVKLE 440

Query: 277 GQGELPQAF--CRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA----SGQDILSHKL 330
            +  L ++               L  P +    DQ   S+ G  L       +  L   +
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYL----DQYFYSHIGHHLKNIEHPERMTLFRMV 496

Query: 331 VLDPSF------------TVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP 378
            LD  F               GS+ ++ QQL + ++ + + DN  K  R +         
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGSILNTLQQL-KFYKPY-ICDNDPKYERLVN-------- 546

Query: 379 DLSNFL 384
            + +FL
Sbjct: 547 AILDFL 552

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.2 bits (132), Expect = 3e-08
 Identities = 53/381 (13%), Positives = 106/381 (27%), Gaps = 104/381 (27%)

Query: 51  LDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEI-SNY-ASR--------- 99
           L  N  Y    S +        + +         D LY+D ++ + Y  SR         
Sbjct: 87  LRIN--YKFLMSPIKTEQRQPSMMTRMYIE--QRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142

Query: 100 -LLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVP 158
            LL   P   N+ + G             +L SG       K+  A  +  +    C + 
Sbjct: 143 ALLELRP-AKNVLIDG-------------VLGSG-------KTWVALDVCLSYKVQCKMD 181

Query: 159 DSRAAIF------KDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAE 212
                IF       +    ++E  Q +  +++     S  +   N +++    + +    
Sbjct: 182 F---KIFWLNLKNCNSPETVLEMLQKL-LYQIDPNWTSRSDHSSN-IKLRIHSIQAELRR 236

Query: 213 FLTKMKLPHKIKSIVLYAIAMAD--YDQEVSEY-------VLKTRDGINRLALYNSSIGR 263
            L      + +  +VL          + +           +L TR            +  
Sbjct: 237 LLKSKPYENCL--LVL------LNVQNAKAWNAFNLSCKILLTTRF---------KQV-- 277

Query: 264 FQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ 323
             + L A                        L  L      L                 +
Sbjct: 278 -TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL---------------PRE 321

Query: 324 DILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDL--S 381
            + ++   L         +A S +    ++  +   +   K+   I  + + L+P     
Sbjct: 322 VLTTNPRRL-------SIIAESIRDGLATWDNWKHVNCD-KLTTIIESSLNVLEPAEYRK 373

Query: 382 NF--LVIFPPRSLFPEQVTSI 400
            F  L +FPP +  P  + S+
Sbjct: 374 MFDRLSVFPPSAHIPTILLSL 394

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	486
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	100.0
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	100.0
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	100.0
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	100.0
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	100.0
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	99.93
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	99.93
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	99.92
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	99.91
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	99.9
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	99.9
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	99.89
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	99.89
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	99.89
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	99.89
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	99.88
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	99.84
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	99.81
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	99.78
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.78
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	99.75
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	99.75
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	99.74
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	99.64
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	99.64
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	99.63
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	99.61
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	99.58
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	99.57
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	99.51
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	99.51
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	99.46
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	99.45
3dme_A	369	Conserved exported protein; structural genomics, P	99.24
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.2
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.12
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.12
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	99.11
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.06
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	99.05
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.03
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.03
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.02
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	99.01
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	98.99
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	98.98
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	98.97
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	98.93
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	98.87
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	98.79
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	98.77
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.62
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.56
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.54
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.53
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	98.46
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.46
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.44
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.43
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	98.43
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	98.42
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.41
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.41
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	98.4
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	98.39
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.38
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.38
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	98.37
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.37
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	98.36
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.35
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.34
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	98.34
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	98.34
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	98.33
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	98.32
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	98.32
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	98.3
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.29
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	98.29
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	98.28
4dna_A	463	Probable glutathione reductase; structural genomic	98.28
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.28
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	98.27
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	98.27
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.27
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.26
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.26
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.26
2cul_A	232	Glucose-inhibited division protein A-related PROT	98.25
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.24
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.24
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	98.24
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	98.23
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.23
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	98.23
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.23
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.22
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.21
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	98.21
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.18
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	98.18
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.18
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	98.18
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.18
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	98.18
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	98.17
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.17
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.17
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.17
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.17
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.16
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	98.16
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.16
3atr_A	453	Conserved archaeal protein; saturating double bond	98.16
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.16
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	98.15
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.15
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	98.15
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	98.15
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	98.15
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.15
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.14
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	98.14
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	98.14
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	98.14
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.14
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.14
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.13
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.12
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.11
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	98.11
2bry_A	497	NEDD9 interacting protein with calponin homology a	98.11
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.11
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.11
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.11
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.09
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.08
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	98.07
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	98.07
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	98.07
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	98.07
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.06
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.05
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.05
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.05
4hb9_A	412	Similarities with probable monooxygenase; flavin,	98.03
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.02
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.02
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	98.02
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.01
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	98.0
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	98.0
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	98.0
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.99
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	97.99
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	97.99
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	97.99
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.98
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	97.97
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	97.97
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	97.97
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	97.96
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	97.96
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	97.95
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	97.95
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	97.94
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	97.94
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	97.94
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	97.93
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	97.91
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	97.89
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	97.88
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	97.86
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.85
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	97.84
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	97.84
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	97.83
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.8
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	97.78
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	97.77
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	97.77
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	97.76
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	97.76
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.75
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.74
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.72
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	97.71
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	97.7
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	97.66
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	97.63
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.61
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	97.6
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.6
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	97.59
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	97.59
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	97.57
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	97.54
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	97.52
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.52
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	97.5
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.5
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.48
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	97.42
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	97.4
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	97.33
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	97.32
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	97.25
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	97.05
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	97.04
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	97.0
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	96.91
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	96.8
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	95.7
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	95.66
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	95.63
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	95.52
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	95.52
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	95.27
1id1_A	153	Putative potassium channel protein; RCK domain, E.	95.23
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	95.03
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	95.0
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	94.98
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	94.92
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	94.85
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	94.83
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	94.8
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	94.8
3c85_A	183	Putative glutathione-regulated potassium-efflux S	94.76
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	94.48
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	94.45
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	94.42
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	94.42
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	94.38
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	94.26
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	94.09
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	94.07
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	94.0
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	93.96
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	93.93
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	93.81
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	93.79
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	93.77
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	93.76
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	93.69
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	93.65
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	93.65
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	93.64
1ojt_A	482	Surface protein; redox-active center, glycolysis,	93.63
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	93.62
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	93.6
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	93.58
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	93.57
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	93.47
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	93.46
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	93.42
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	93.39
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	93.32
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	93.29
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	93.28
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	93.21
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	93.19
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	93.17
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	93.11
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	93.06
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	93.05
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	93.03
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	93.02
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	93.02
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	93.01
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	92.99
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	92.89
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	92.88
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	92.88
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	92.82
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	92.81
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	92.8
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	92.78
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	92.76
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	92.74
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	92.73
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	92.72
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	92.72
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	92.7
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	92.69
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	92.69
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	92.68
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	92.66
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	92.61
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	92.6
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	92.53
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	92.49
2cul_A	232	Glucose-inhibited division protein A-related PROT	92.47
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	92.47
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	92.45
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	92.36
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	92.31
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	92.28
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	92.18
3qha_A	296	Putative oxidoreductase; seattle structural genomi	92.18
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	92.13
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	92.07
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	92.05
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	92.05
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	92.03
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	92.01
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	91.99
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	91.98
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	91.93
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	91.83
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	91.74
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	91.72
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	91.69
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	91.6
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	91.5
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	91.47
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	91.46
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	91.31
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	91.31
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	91.28
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	91.25
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	91.24
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	91.22
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	91.13
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	91.09
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	90.98
3tl2_A	315	Malate dehydrogenase; center for structural genomi	90.97
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	90.96
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	90.96
3atr_A	453	Conserved archaeal protein; saturating double bond	90.95
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	90.92
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	90.91
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	90.86
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	90.86
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	90.81
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	90.72
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	90.71
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	90.67
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	90.65
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	90.65
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	90.63
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	90.63
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	90.62
4g65_A	461	TRK system potassium uptake protein TRKA; structur	90.59
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	90.55
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	90.46
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	90.46
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	90.32
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	90.22
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	90.22
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	90.21
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	90.21
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	90.18
3r9u_A	315	Thioredoxin reductase; structural genomics, center	90.1
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	90.06
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	89.98
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	89.96
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	89.93
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	89.91
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	89.91
1fec_A	490	Trypanothione reductase; redox-active center, oxid	89.86
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	89.83
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	89.83
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	89.81
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	89.76
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	89.73
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	89.71
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	89.68
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	89.67
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	89.61
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	89.57
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	89.55
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	89.48
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	89.47
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	89.41
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	89.41
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	89.38
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	89.38
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	89.36
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	89.28
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	89.25
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	89.25
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	89.1
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	89.09
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	89.09
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	89.08
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	89.05
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	88.94
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	88.88
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	88.79
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	88.79
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	88.72
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	88.7
2e1m_B	130	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	88.67
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	88.63
4dna_A	463	Probable glutathione reductase; structural genomic	88.59
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	88.47
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	88.44
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	88.42
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	88.37
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	88.33
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	88.32
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	88.26
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	88.19
4ezb_A	317	Uncharacterized conserved protein; structural geno	88.17
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	88.13
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	88.08
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	88.01
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	87.98
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	87.95
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	87.94
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	87.93
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	87.74
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	87.72
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	87.66
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	87.58
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	87.57
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	87.36
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	87.29
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	87.28
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	87.25
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	87.21
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	87.21
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	87.18
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	87.07
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	87.04
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	87.03
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	87.0
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	86.97
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	86.97
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	86.91
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	86.79
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	86.77
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	86.7
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	86.69
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	86.66
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	86.65
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	86.63
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	86.58
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	86.57
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	86.43
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	86.31
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	86.27
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	86.26
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	86.24
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	86.19
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	86.15
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	86.12
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	86.05
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	86.02
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	85.99
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	85.92
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	85.86
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	85.86
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	85.84
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	85.82
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	85.78
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	85.71
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	85.59
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	85.58
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	85.49
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	85.43
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	85.42
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	85.28
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	85.26
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	85.16
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	85.02
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	84.98
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	84.83
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	84.35
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	84.3
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	84.21
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	84.2
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	84.19
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	84.18
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	84.17
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	84.16
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	84.1
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	84.09
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	83.97
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	83.97
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	83.93
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	83.92
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	83.86
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	83.81
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	83.75
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	83.74
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	83.49
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	83.46
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	83.28
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	83.27
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	83.26
2we8_A	386	Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc	83.25
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	83.15
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	83.07
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	82.99
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	82.98
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	82.86
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	82.86
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	82.84

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=100.00  E-value=2.5e-58  Score=487.46  Aligned_cols=417  Identities=30%  Similarity=0.509  Sum_probs=324.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCC-------C----------
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSS-------V----------   82 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~-------~----------   82 (486)
                      +.+|||+|||+|+.|++.|+.|++.|++|+|+|+|++|||.+.++++.++.+|+........       .          
T Consensus         6 ~~~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~gg~~~~~~l~~l~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (650)
T 1vg0_A            6 PSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQENNDVVTENSMWQEQILENEEA   85 (650)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHHHTC----------CGGGGCCTTEEE
T ss_pred             CCcCCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCcccCccccccHHHHHHHHHHhhccccccccccchhhhhhcchhh
Confidence            34799999999999999999999999999999999999999999999999999876542100       0          


Q ss_pred             ----CCCCcccccccccc--------------------------------------------------------------
Q 011414           83 ----CPDPLYSDVEISNY--------------------------------------------------------------   96 (486)
Q Consensus        83 ----~~~~~~~~~~~~~~--------------------------------------------------------------   96 (486)
                          .....+.+.++.++                                                              
T Consensus        86 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (650)
T 1vg0_A           86 IPLSSKDKTIQHVEVFCYASQDLHKDVEEAGALQKNHASVTSAQSAEAAEAAETSCLPTAVEPLSMGSCEIPAEQSQCPG  165 (650)
T ss_dssp             EEBCSSCCCEEEEEEEECSCC-----------------------------------------------------------
T ss_pred             ccccccccccccceeEeecccccccchhhccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                00000000000000                                                              


Q ss_pred             ------------------------------------------ccc-----cccCCCCceEeecCCCEEEecChHHHHHHH
Q 011414           97 ------------------------------------------ASR-----LLSQHPRNFNLDVSGPRVLFCADHAVDLML  129 (486)
Q Consensus        97 ------------------------------------------~~~-----~~~~~~~~~~idl~Gp~ll~~~~~l~~~l~  129 (486)
                                                                ...     .+.+..|+|+||+ ||+++++++.++++|+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~R~f~~DL-~PklL~~~g~lv~LL~  244 (650)
T 1vg0_A          166 PESSPEVNDAEATGKKENSDAKSSTEEPSENVPKVQDNTETPKKNRITYSQIIKEGRRFNIDL-VSKLLYSRGLLIDLLI  244 (650)
T ss_dssp             ---------------------------------------------CCCHHHHHHTGGGCCEES-SCCCEESSSHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccchhhhcccCCCeEEee-CCeeeeCCcHHHHHHH
Confidence                                                      000     0112579999999 5999999999999999


Q ss_pred             hcCcccccchhcccceeeeccCCceeecCCCHHHHhhcccCChHhHHHHHHHHHHHHhhcccCccccccccccccccCCc
Q 011414          130 KSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSP  209 (486)
Q Consensus       130 ~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s~~~~f~~~~l~~~~k~~l~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s  209 (486)
                      ++|+.+|++|+.++..|++. +|+++++|+++.++|+++.+++.+|+.+|+|++.+..+.. .+      .....+..+|
T Consensus       245 ~sgV~~yLEFk~v~~~y~~~-~G~~~~VPas~~eif~s~~Lsl~EKr~L~kFl~~~~~~~~-~p------~~~~~~d~~S  316 (650)
T 1vg0_A          245 KSNVSRYAEFKNITRILAFR-EGTVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCVEYEE-HP------DEYRAYEGTT  316 (650)
T ss_dssp             HHTGGGGCCEEECCEEEEES-SSSEEECCCSHHHHHHCSSSCHHHHHHHHHHHHHHHTGGG-CH------HHHHTTTTSB
T ss_pred             HcCCcceeeEEEccceEEec-CCCEeECCCCHHHHHhCcCCCHHHHHHHHHHHHHHHHhcc-Ch------HHHhhhccCC
Confidence            99999999999999988874 8889999999999999999999999999999999887532 11      0123456789


Q ss_pred             HHHHHHhcCCChHHHHHHHHHHhhccCCchhhhhhhchhhHHHHHHHHHHhhhcccCCCcceEeecCCcchHHHHHHHHH
Q 011414          210 FAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRA  289 (486)
Q Consensus       210 ~~~~l~~~~l~~~l~~~l~~~i~~~~~~~~~~~~~~s~~~~l~~~~~~~~s~g~~g~~~g~~~~p~gG~~~L~qal~r~~  289 (486)
                      +.+||+++++++.++.++.+++++.....      .++..++.++..|+.++++||.+  +++||+||+++|+|+|||++
T Consensus       317 ~~d~L~~~~ls~~L~~~L~~~lal~~~~~------~pa~~~l~~i~~~l~sl~~yg~s--g~~yp~GG~g~L~qaL~r~~  388 (650)
T 1vg0_A          317 FSEYLKTQKLTPNLQYFVLHSIAMTSETT------SCTVDGLKATKKFLQCLGRYGNT--PFLFPLYGQGELPQCFCRMC  388 (650)
T ss_dssp             HHHHHTTSSSCHHHHHHHHHHTTC--CCS------CBHHHHHHHHHHHHHHTTSSSSS--SEEEETTCTTHHHHHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHhccCCCC------CchhHHHHHHHHHHHHHHhhccC--ceEEeCCchhHHHHHHHHHH
Confidence            99999999999999999887766643321      24566777788899999888863  48999999999999999999


Q ss_pred             HHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEECCCCCCCCCCcccchhhhhhhhhhccCCCcceEEEEE
Q 011414          290 AVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGI  369 (486)
Q Consensus       290 ~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i  369 (486)
                      +++||+|+|+++|++|.++.++|++++|++.+|++++|++||++|.++ +...   .           .+...++++|++
T Consensus       389 ~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~~VVs~~~~l-p~~~---~-----------~~~~~~~v~R~i  453 (650)
T 1vg0_A          389 AVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYL-SENT---C-----------SRVQYRQISRAV  453 (650)
T ss_dssp             HHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGGGB-CTTT---T-----------TTCCCEEEEEEE
T ss_pred             HHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCCEEEcCEEEEChhhc-CHhH---h-----------ccccccceEEEE
Confidence            999999999999999998821188999988889999999999988775 3211   0           111246799999


Q ss_pred             EEecCCCCCCC---CceEEEeCCCCCCCCCCceEEEEEeCCCCccCCCCeEEEEEEEeeccCcchHHHHHHHHHHHHhhh
Q 011414          370 CITRSSLKPDL---SNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLL  446 (486)
Q Consensus       370 ~i~~~~~~~~~---~~~~~~~p~~~~~~~~~~~v~v~~~~~~~~~~P~G~~vi~~~t~~~~~~~~~~~l~~~~~~l~~~~  446 (486)
                      +|+++|+.+..   ...++++|+.+ +  ..++||++++|++++.||+|++|+|+++..  ..+++++|++++++|+...
T Consensus       454 ~i~~~pi~~~~~~~~~~~iiiP~~~-g--~~~~V~i~~~Ss~~~~cP~G~~Vv~lst~~--~~~~~~eLe~~l~~L~~~~  528 (650)
T 1vg0_A          454 LITDGSVLRTDADQQVSILTVPAEE-P--GSFAVRVIELCSSTMTCMKGTYLVHLTCMS--SKTAREDLERVVQKLFTPY  528 (650)
T ss_dssp             EEESSCSSCCSCCCCCEEEEECCSS-T--TSCCEEEEEECGGGTSSCTTCEEEEEEEEC--SSCHHHHHHHHHHHHCBSC
T ss_pred             EEecCCCCCcCCCcceEEEEccCcc-C--CCCCEEEEEeCCCCCCCCCCCEEEEEEeec--CCCHHHHHHHHHHHHhccc
Confidence            99999986532   45788888765 2  367899999999999999999999999873  3588999999999998531


Q ss_pred             hcCCCCCCCCccccccccCCcceEeEEeEEeecCc
Q 011414          447 VTGTAGNSSTAQSEDMEEAKPTLLWSALYIQDLSL  481 (486)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  481 (486)
                              .+++.++.+.++|+|||++||+|.+..
T Consensus       529 --------~~~~~~~~~~~~~~vLws~~~~~~~~~  555 (650)
T 1vg0_A          529 --------TEIEAENEQVEKPRLLWALYFNMRDSS  555 (650)
T ss_dssp             --------SCCC-------CCBEEEEEEEEEEECT
T ss_pred             --------cccccccccccCCceEEEEEEEeeccc
Confidence                    122233445679999999999998765

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=6.5e-55  Score=449.78  Aligned_cols=378  Identities=24%  Similarity=0.426  Sum_probs=309.2

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCcccccccccccc
Q 011414           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS   98 (486)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (486)
                      ++++|||||||||++|+++|+.|+++|++|+|+|+++++||++++++..++..|+..+. ++                 .
T Consensus        17 ~~~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~Gg~~~s~~~~~l~~~~~~g~-~~-----------------~   78 (475)
T 3p1w_A           17 QGEHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASLNLTNLYNTFKPKE-NI-----------------P   78 (475)
T ss_dssp             CCCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHCTTS-CC-----------------C
T ss_pred             ccccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCCCCccccchhhhhhhcccCC-Cc-----------------c
Confidence            45679999999999999999999999999999999999999999999887666654321 11                 0


Q ss_pred             ccccCCCCceEeecCCCEEEecChHHHHHHHhcCcccccchhcccceeeec--------cCCceeecCCCHHHHhhcccC
Q 011414           99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLD--------ADAKLCSVPDSRAAIFKDKSL  170 (486)
Q Consensus        99 ~~~~~~~~~~~idl~Gp~ll~~~~~l~~~l~~~~~~~y~ef~~~~~~~~~~--------~~g~~~~vp~s~~~~f~~~~l  170 (486)
                      +.+ ...|+|++|+. |+++++.+.++++|.++++.+|++|+.++..|++.        ++|+++++|+++.++|+++.+
T Consensus        79 ~~~-g~~R~y~iDL~-P~~l~~~g~L~~lL~~~gv~~ylef~~~~~~y~~~~~~~~~~~~~g~~~~VPss~~e~~~~~lL  156 (475)
T 3p1w_A           79 SKY-GENRHWNVDLI-PKFILVGGNLVKILKKTRVTNYLEWLVVEGSYVYQHQKKGFLTSEKFIHKVPATDMEALVSPLL  156 (475)
T ss_dssp             GGG-CCGGGCCEESS-CCBEETTSHHHHHHHHTTCGGGSCEEECSEEEEEEEECCCSSSCCEEEEECCCSHHHHHTCTTS
T ss_pred             ccc-ccccceEEeec-CeEeecCcHHHHHHHHCCchheeEEEecCcceEEecCccccccCCCceEeCCCCHHHHhhccCC
Confidence            122 36789999995 99999999999999999999999999999998764        257899999999999999999


Q ss_pred             ChHhHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChHHHHHHHHHHhhccCCchhhhhhhchhhH
Q 011414          171 GLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDG  250 (486)
Q Consensus       171 ~~~~k~~l~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~l~~~i~~~~~~~~~~~~~~s~~~~  250 (486)
                      ++.+|+++|+|+..+.++....+..   .. ..+....|+.+|++++++++.+++++.+++++.... +.  ...++.++
T Consensus       157 s~~eK~~l~kFL~~l~~~~~~~~~~---~~-~~~l~~~s~~e~l~~~gls~~l~~fl~~alaL~~~~-~~--~~~~a~~~  229 (475)
T 3p1w_A          157 SLMEKNRCKNFYQYVSEWDANKRNT---WD-NLDPYKLTMLEIYKHFNLCQLTIDFLGHAVALYLND-DY--LKQPAYLT  229 (475)
T ss_dssp             CHHHHHHHHHHHHHHHHCCTTCGGG---ST-TCCTTTSBHHHHHHHTTCCHHHHHHHHHHTSCCSSS-GG--GGSBHHHH
T ss_pred             CHHHHHHHHHHHHHHHhhhhccchh---hh-cccccCCCHHHHHHHcCCCHHHHHHHHHHHHhhcCC-Cc--ccCCHHHH
Confidence            9999999999999987764221110   00 012346899999999999999999887877665321 11  12477888


Q ss_pred             HHHHHHHHHhhhcccCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEE
Q 011414          251 INRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKL  330 (486)
Q Consensus       251 l~~~~~~~~s~g~~g~~~g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~V  330 (486)
                      +.++..|+.|+++||.+  +++||+||+++|+++|+|.++++||+|+++++|++|..+ ++|++++|++.+|++++||+|
T Consensus       230 l~ri~~y~~Sl~~yg~s--~~~yp~gG~~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d-~~g~v~gV~~~~G~~i~Ad~V  306 (475)
T 3p1w_A          230 LERIKLYMQSISAFGKS--PFIYPLYGLGGIPEGFSRMCAINGGTFMLNKNVVDFVFD-DDNKVCGIKSSDGEIAYCDKV  306 (475)
T ss_dssp             HHHHHHHHHHHHHHSSC--SEEEETTCTTHHHHHHHHHHHHC--CEESSCCEEEEEEC-TTSCEEEEEETTSCEEEEEEE
T ss_pred             HHHHHHHHHHHhhcCCC--ceEEECCCHHHHHHHHHHHHHHcCCEEEeCCeEEEEEEe-cCCeEEEEEECCCcEEECCEE
Confidence            99999999999999854  489999999999999999999999999999999999983 278889999999999999999


Q ss_pred             EECCCCCCCCCCcccchhhhhhhhhhccCCCcceEEEEEEEecCCCCC--CCCceEEEeCCCCCCCCCCceEEEEEeCCC
Q 011414          331 VLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP--DLSNFLVIFPPRSLFPEQVTSIRVLQLGGN  408 (486)
Q Consensus       331 I~~p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~~~--~~~~~~~~~p~~~~~~~~~~~v~v~~~~~~  408 (486)
                      |+++++.. .+  +      +.      ....+.++|+|+|+++|+..  +..+++++||+.+++  ..++||++++|++
T Consensus       307 I~a~~~~~-~~--p------~~------~~~~~~v~R~i~I~~~pi~~~~~~~~~~i~~P~~~~~--~~~~iy~~~~s~~  369 (475)
T 3p1w_A          307 ICDPSYVM-HL--K------NK------IKKIGQVIRCICILSNPIPETNQTNSCQIIIPQNQLN--RKSDIYINLVSFQ  369 (475)
T ss_dssp             EECGGGCT-TS--T------TS------EEEEEEEEEEEEEESSCCTTSTTCSSEEEEECGGGGT--SSSCEEEEEEEGG
T ss_pred             EECCCccc-cC--c------cc------ccccceEEEEEEEEeccCcccCCCceEEEEeCCcccC--CCCCEEEEEECCC
Confidence            99887641 11  1      00      01246799999999999966  335778999987764  3678999999999


Q ss_pred             CccCCCCeEEEEEEEeeccCcchHHHHHHHHHHHHh
Q 011414          409 LAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQK  444 (486)
Q Consensus       409 ~~~~P~G~~vi~~~t~~~~~~~~~~~l~~~~~~l~~  444 (486)
                      +++||+|+||+|+||..++ .+++++|++++++|..
T Consensus       370 ~~~cp~G~~i~~~st~~e~-~~~~~~l~~~l~~l~~  404 (475)
T 3p1w_A          370 HGVTLKGKYIAIVSATVET-NNPIKEIEKPLELLGT  404 (475)
T ss_dssp             GTSSCTTCEEEEEEEECCS-SCHHHHTHHHHHTTCS
T ss_pred             cCcCCCCcEEEEEEeecCC-CCHHHHHHHHHHHhcc
Confidence            9999999999999998865 5899999999999984

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=100.00  E-value=7.3e-41  Score=347.77  Aligned_cols=376  Identities=24%  Similarity=0.479  Sum_probs=281.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCccccccccccccc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (486)
                      +.++||||||||++||+||++|+++|++|+|||+++++||+++|++.++...++..... .         ..+.    ..
T Consensus         9 ~~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~g~~~~~d~~~~-~---------~~~~----~~   74 (453)
T 2bcg_G            9 DTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPI-S---------KEER----ES   74 (453)
T ss_dssp             CCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHCSSCC-C---------HHHH----HH
T ss_pred             cccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCccccceeccchhceeccCCc-c---------ccCc----ch
Confidence            35799999999999999999999999999999999999999999988763222211100 0         0000    00


Q ss_pred             cccCCCCceEeecCCCEEEecChHHHHHHHhcCcccccchhcccceeeeccCCceeecCCCHHHHhhcccCChHhHHHHH
Q 011414          100 LLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLM  179 (486)
Q Consensus       100 ~~~~~~~~~~idl~Gp~ll~~~~~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s~~~~f~~~~l~~~~k~~l~  179 (486)
                      .+ ...+.|.+++ +|++++..+.+.++|.++|+.+|++|..++..|.+. +|+.+++|.++.+.+.+..+++.+|+.++
T Consensus        75 ~~-~~g~~~~~~l-~P~~l~~~~~l~~ll~~lg~~~~l~~~~~~~~~~~~-~g~~~~~p~~~~~~~~~~l~~~~~~~~~~  151 (453)
T 2bcg_G           75 KF-GKDRDWNVDL-IPKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFK-QGKIYKVPANEIEAISSPLMGIFEKRRMK  151 (453)
T ss_dssp             HH-CCGGGCCEES-SCCBEETTSHHHHHHHHHTGGGTCCEEECCCEEEEE-TTEEEECCSSHHHHHHCTTSCHHHHHHHH
T ss_pred             hc-ccccceeecc-ccceeecCcHHHHHHHhcCCccceEEEEccceeEEe-CCeEEECCCChHHHHhhhccchhhHHHHH
Confidence            01 1235688899 499999999999999999999999999998878764 88999999997788888888888999999


Q ss_pred             HHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChHHHHHHHHHHhhccCCchhhhhhhchhhHHHHHHHHHH
Q 011414          180 RFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNS  259 (486)
Q Consensus       180 ~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~l~~~i~~~~~~~~~~~~~~s~~~~l~~~~~~~~  259 (486)
                      +|+..+..+....+..   .. ..+....|+.+|++++++++.+++++.+.+.+.......   ..++..++.++..|+.
T Consensus       152 ~~~~~~~~~~~~~p~~---~~-~~~~~~~s~~~~l~~~~~~~~l~~~l~~~~~l~~~~~~~---~~p~~~~~~~~~~~~~  224 (453)
T 2bcg_G          152 KFLEWISSYKEDDLST---HQ-GLDLDKNTMDEVYYKFGLGNSTKEFIGHAMALWTNDDYL---QQPARPSFERILLYCQ  224 (453)
T ss_dssp             HHHHHHHHCBTTBGGG---ST-TCCTTTSBHHHHHHHTTCCHHHHHHHHHHTSCCSSSGGG---GSBHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCchh---hh-ccccccCCHHHHHHHhCCCHHHHHHHHHHHHhccCcccc---CCchHHHHHHHHHHHH
Confidence            9999887654221110   00 012457899999999999999999887665543211000   0144556666677887


Q ss_pred             hhhcccCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEECCCCCCC
Q 011414          260 SIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVP  339 (486)
Q Consensus       260 s~g~~g~~~g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~p~~~~~  339 (486)
                      ++++++.  +++.||+||+++|+++|++.+++.|++|+++++|++|..+.+++++++|++ +|++++||+||+++.....
T Consensus       225 s~~~~~~--~~~~~p~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~-~g~~~~ad~VV~a~~~~~~  301 (453)
T 2bcg_G          225 SVARYGK--SPYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT-KLGTFKAPLVIADPTYFPE  301 (453)
T ss_dssp             HHHHHSS--CSEEEETTCTTHHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE-TTEEEECSCEEECGGGCGG
T ss_pred             HHHhhcC--CceEeeCCCHHHHHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEE-CCeEEECCEEEECCCccch
Confidence            8777764  347799999999999999999999999999999999987521467778886 6889999999986543211


Q ss_pred             CCCcccchhhhhhhhhhccCCCcc-eEEEEEEEecCCCCC--CCCceEEEeCCCCCCCCCCceEEEEEeCCCCccCCCCe
Q 011414          340 GSLASSHQQLQESFQAFSLSDNKG-KVARGICITRSSLKP--DLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGM  416 (486)
Q Consensus       340 ~l~~~~~~~l~~~~~~l~~~~~~~-~v~r~i~i~~~~~~~--~~~~~~~~~p~~~~~~~~~~~v~v~~~~~~~~~~P~G~  416 (486)
                      ++        .          ... ...+++++++++++.  ...+..+++|....+  .++.+|+.+.+..++.||+|+
T Consensus       302 ~l--------~----------~~~~~~~~~~~i~~~~~~~~~~~~~~~ii~~~~~~~--~~~~~~v~~~s~~d~~aP~G~  361 (453)
T 2bcg_G          302 KC--------K----------STGQRVIRAICILNHPVPNTSNADSLQIIIPQSQLG--RKSDIYVAIVSDAHNVCSKGH  361 (453)
T ss_dssp             GE--------E----------EEEEEEEEEEEEESSCCTTSTTCSSEEEEECGGGTT--CSSCEEEEEEEGGGTSSCTTC
T ss_pred             hh--------c----------ccCCcceeEEEEEccccCCCCCCccEEEEeCccccC--CCCCEEEEEeCCCCCCCCCCc
Confidence            11        0          122 467888889998763  223567788865544  267899999988778999999


Q ss_pred             EEEEEEEeeccCcchHHHHHHHHHHHH
Q 011414          417 FVLYFSALCDEVNQGKKLLHAALSALQ  443 (486)
Q Consensus       417 ~vi~~~t~~~~~~~~~~~l~~~~~~l~  443 (486)
                      ++++++++++. .+++++|++++++|.
T Consensus       362 ~~~~v~~~~~~-~~~~~~l~~~~~~l~  387 (453)
T 2bcg_G          362 YLAIISTIIET-DKPHIELEPAFKLLG  387 (453)
T ss_dssp             EEEEEEEECCS-SCHHHHTHHHHGGGC
T ss_pred             EEEEEEEecCC-CCHHHHHHHHHHHhh
Confidence            99999998875 477888999988866

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=100.00  E-value=4.3e-39  Score=332.49  Aligned_cols=370  Identities=27%  Similarity=0.510  Sum_probs=279.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccc-hhhhhhhhhcCCCCCCCCCCCcccccccccccc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS-IADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS   98 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (486)
                      +.++||||||+|++||++|++|+++|++|+|+|+++++||+++|++ +....++. +.+..       .+.         
T Consensus         4 ~~~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~s~~~~~~g~~~~-~~~~~-------~~~---------   66 (433)
T 1d5t_A            4 DEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRF-QLLEG-------PPE---------   66 (433)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTSCEECSHHHHHHHT-TCTTC-------CCG---------
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCccccccccccHHHHHhhc-cCCCC-------Chh---------
Confidence            4579999999999999999999999999999999999999999998 43211111 11000       000         


Q ss_pred             ccccCCCCceEeecCCCEEEecChHHHHHHHhcCcccccchhcccceeeeccCCceeecCCCHHHHhhcccCChHhHHHH
Q 011414           99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (486)
Q Consensus        99 ~~~~~~~~~~~idl~Gp~ll~~~~~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s~~~~f~~~~l~~~~k~~l  178 (486)
                       .+ ...+.|.+|+ ||++++..+.+.++|.++|+.+|++|...+..|++. +|+.+.+|.+..+.+....++..+|+.+
T Consensus        67 -~~-~~g~~~~~d~-gP~~l~~~~~l~~ll~~lgl~~~l~~~~~~~~~~~~-~g~~~~~p~~~~~~~~~~l~~~~~~~~~  142 (433)
T 1d5t_A           67 -TM-GRGRDWNVDL-IPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYK-GGKIYKVPSTETEALASNLMGMFEKRRF  142 (433)
T ss_dssp             -GG-CCGGGCCEES-SCCBEETTSHHHHHHHHHTGGGGCCEEECCEEEEEE-TTEEEECCCSHHHHHHCSSSCHHHHHHH
T ss_pred             -Hh-cccCceEEcc-CcceeeccchHHHHHHHcCCccceEEEEeCceEEee-CCEEEECCCCHHHHhhCcccChhhHHHH
Confidence             01 1235788999 599999999999999999999999999988877764 8899999998767888788888899999


Q ss_pred             HHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChHHHHHHHHHHhhccCCchhhhhhhchhhHHHHHHHHH
Q 011414          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN  258 (486)
Q Consensus       179 ~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~l~~~i~~~~~~~~~~~~~~s~~~~l~~~~~~~  258 (486)
                      ++|+..+..+....+..   .+ ..++.+.|+.+|+++++.++.+++++.+.+++... .++  ...++..++.++..|.
T Consensus       143 ~~~~~~~~~~~~~~p~~---~~-~~~~~~~s~~~~l~~~~~~~~l~~~l~~~~~~~~~-~~~--~~~p~~~~~~~~~~~~  215 (433)
T 1d5t_A          143 RKFLVFVANFDENDPKT---FE-GVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRT-DDY--LDQPCLETINRIKLYS  215 (433)
T ss_dssp             HHHHHHHHHCCTTCGGG---GT-TCCTTTSBHHHHHHHTTCCHHHHHHHHHHTSCCSS-SGG--GGSBSHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcccCchh---cc-ccccccCCHHHHHHHcCCCHHHHHHHHHHHHhccC-CCc--cCCCHHHHHHHHHHHH
Confidence            99998887653221110   01 11345789999999999999999987765444211 111  1235666667777888


Q ss_pred             HhhhcccCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEECCCCCC
Q 011414          259 SSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTV  338 (486)
Q Consensus       259 ~s~g~~g~~~g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~p~~~~  338 (486)
                      .+++++|.  ++++||+||+++|+++|++.++++|++|+++++|++|..+  ++++++|+ .+|++++||+||++.... 
T Consensus       216 ~s~~~~g~--~~~~~p~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~--~~~v~~v~-~~g~~~~ad~VV~a~~~~-  289 (433)
T 1d5t_A          216 ESLARYGK--SPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVK-SEGEVARCKQLICDPSYV-  289 (433)
T ss_dssp             HSCCSSSC--CSEEEETTCTTHHHHHHHHHHHHHTCCCBCSCCCCEEEEE--TTEEEEEE-ETTEEEECSEEEECGGGC-
T ss_pred             HHHHhcCC--CcEEEeCcCHHHHHHHHHHHHHHcCCEEECCCEEEEEEEe--CCEEEEEE-ECCeEEECCEEEECCCCC-
Confidence            77776764  3478999999999999999999999999999999999987  67887787 588899999999864432 


Q ss_pred             CCCCcccchhhhhhhhhhccCCCcceEEEEEEEecCCCCCC--CCceEEEeCCCCCCCCCCceEEEEEeCCCCccCCCCe
Q 011414          339 PGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPD--LSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGM  416 (486)
Q Consensus       339 ~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~~~~--~~~~~~~~p~~~~~~~~~~~v~v~~~~~~~~~~P~G~  416 (486)
                      +..+       +          ......++++++++++...  +.+..+.+|....+  .++.+|+.+.+.+++.||+|+
T Consensus       290 ~~~~-------~----------~~~~~~~~~~il~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~v~~~s~d~~~aP~G~  350 (433)
T 1d5t_A          290 PDRV-------R----------KAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVN--RKSDIYVCMISYAHNVAAQGK  350 (433)
T ss_dssp             GGGE-------E----------EEEEEEEEEEEESSCCTTSTTCSSEEEEECGGGTT--CSSCEEEEEEEGGGTSSCTTC
T ss_pred             cccc-------c----------ccCcceeEEEEEcCcccccCCCceEEEEeCccccC--CCCCEEEEEECCCCcccCCCC
Confidence            1110       0          0123566788888887532  24567788865544  367899999997778999999


Q ss_pred             EEEEEEEeeccCcchHHHHHHHHHHHH
Q 011414          417 FVLYFSALCDEVNQGKKLLHAALSALQ  443 (486)
Q Consensus       417 ~vi~~~t~~~~~~~~~~~l~~~~~~l~  443 (486)
                      ++++++++++. .+++++|++++++|.
T Consensus       351 ~~~~~~~~~p~-~~~~~~l~~~~~~l~  376 (433)
T 1d5t_A          351 YIAIASTTVET-TDPEKEVEPALGLLE  376 (433)
T ss_dssp             EEEEEEEECCS-SCHHHHTHHHHTTTC
T ss_pred             EEEEEEEecCC-CCHHHHHHHHHHHhh
Confidence            99999998875 477888999998876

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=100.00  E-value=3.4e-31  Score=278.46  Aligned_cols=345  Identities=14%  Similarity=0.102  Sum_probs=203.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCcccccccccccccccc
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS  102 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (486)
                      .+|||||||++||+||++|+++|++|+|||+++++||+++|++.+                                   
T Consensus         2 k~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~GG~~~t~~~~-----------------------------------   46 (501)
T 4dgk_A            2 KPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKPGGRAYVYEDQ-----------------------------------   46 (501)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEECCC-------CEEEET-----------------------------------
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCCCCcEEEEEeC-----------------------------------
Confidence            579999999999999999999999999999999999999998654                                   


Q ss_pred             CCCCceEeecCCCEEEecChHHHHHHHhcC--cccccchhcccceee-eccCCceeecCCCHHHHhhc-ccCChHhHHHH
Q 011414          103 QHPRNFNLDVSGPRVLFCADHAVDLMLKSG--ASHYLEFKSIDATFM-LDADAKLCSVPDSRAAIFKD-KSLGLMEKNQL  178 (486)
Q Consensus       103 ~~~~~~~idl~Gp~ll~~~~~l~~~l~~~~--~~~y~ef~~~~~~~~-~~~~g~~~~vp~s~~~~f~~-~~l~~~~k~~l  178 (486)
                          +|.+|. ||+++...+.+.+++...+  +.+++++...++.|. ...+|+.+.++.+...+... ..+++.+...+
T Consensus        47 ----G~~~D~-G~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~  121 (501)
T 4dgk_A           47 ----GFTFDA-GPTVITDPSAIEELFALAGKQLKEYVELLPVTPFYRLCWESGKVFNYDNDQTRLEAQIQQFNPRDVEGY  121 (501)
T ss_dssp             ----TEEEEC-SCCCBSCTHHHHHHHHTTTCCGGGTCCEEEESSSEEEEETTSCEEEECSCHHHHHHHHHHHCTHHHHHH
T ss_pred             ----CEEEec-CceeecCchhHHHHHHHhcchhhhceeeEecCcceEEEcCCCCEEEeeccHHHHHHHHhhcCccccchh
Confidence                356677 5887766665666666654  567788888777663 33478888888776543321 23456777778


Q ss_pred             HHHHHHHHhhcccCcc---cc---cccc---ccccc----cCCcHHHHHHhcCCChHHHHHHHH-HHhhccCCchhhhhh
Q 011414          179 MRFFKLVQGHLSLDES---EE---NNVR---ISEED----LDSPFAEFLTKMKLPHKIKSIVLY-AIAMADYDQEVSEYV  244 (486)
Q Consensus       179 ~~fl~~~~~~~~~~~~---~~---~~~~---~~~~~----~~~s~~~~l~~~~l~~~l~~~l~~-~i~~~~~~~~~~~~~  244 (486)
                      .+|+..++........   ..   ...+   .....    ...++.++++++..++.++.++.+ ++........     
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g~~p~~-----  196 (501)
T 4dgk_A          122 RQFLDYSRAVFKEGYLKLGTVPFLSFRDMLRAAPQLAKLQAWRSVYSKVASYIEDEHLRQAFSFHSLLVGGNPFA-----  196 (501)
T ss_dssp             HHHHHHHHHHTSSSCC--CCCCCCCHHHHHHSGGGTTTSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHSCC-------
T ss_pred             hhHHHHHHHhhhhhhhhccccccchhhhhhhhhhhhhhhhhcccHHHHHHHHhccHHHHhhhhhhhcccCCCcch-----
Confidence            8888776543221100   00   0000   00011    113677888888888888887653 2222111111     


Q ss_pred             hchhhHHHHHHHHHHhhhcccCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcE
Q 011414          245 LKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQD  324 (486)
Q Consensus       245 ~s~~~~l~~~~~~~~s~g~~g~~~g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~  324 (486)
                      .++..   .+..++  ....|     .+||+||+++|+++|++.++++||+|++|++|++|.++  ++++++|++++|++
T Consensus       197 ~~~~~---~~~~~~--~~~~G-----~~~p~GG~~~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~--~~~~~gV~~~~g~~  264 (501)
T 4dgk_A          197 TSSIY---TLIHAL--EREWG-----VWFPRGGTGALVQGMIKLFQDLGGEVVLNARVSHMETT--GNKIEAVHLEDGRR  264 (501)
T ss_dssp             CCCTH---HHHHHH--HSCCC-----EEEETTHHHHHHHHHHHHHHHTTCEEECSCCEEEEEEE--TTEEEEEEETTSCE
T ss_pred             hhhhh---hhhhhh--hccCC-----eEEeCCCCcchHHHHHHHHHHhCCceeeecceeEEEee--CCeEEEEEecCCcE
Confidence            12221   111111  11222     57999999999999999999999999999999999998  88999999999999


Q ss_pred             EEcCEEEEC--CCCCCCCCCcccchhhhhhh-hhhccCCCcceEEEEEEEecCCCCCCCCceEEEeCCC-CC-------C
Q 011414          325 ILSHKLVLD--PSFTVPGSLASSHQQLQESF-QAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPR-SL-------F  393 (486)
Q Consensus       325 i~A~~VI~~--p~~~~~~l~~~~~~~l~~~~-~~l~~~~~~~~v~r~i~i~~~~~~~~~~~~~~~~p~~-~~-------~  393 (486)
                      +.||.||++  |..++..|+ +.. +.+..+ +.+.+...........+.++.+......+.++.-+.. ..       +
T Consensus       265 ~~ad~VV~~a~~~~~~~~Ll-~~~-~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~~~l~~~~i~~~~~~~~~~~~~~~~~  342 (501)
T 4dgk_A          265 FLTQAVASNADVVHTYRDLL-SQH-PAAVKQSNKLQTKRMSNSLFVLYFGLNHHHDQLAHHTVCFGPRYRELIDEIFNHD  342 (501)
T ss_dssp             EECSCEEECCC-----------------------------CCEEEEEEEEESSCCTTSCSEEEEEECC------------
T ss_pred             EEcCEEEECCCHHHHHHHhc-ccc-ccchhhhhhhhccccCCceeEEEecccCCccccccceeccccchhhhcccccccc
Confidence            999999964  455544553 211 122111 1121111112233333345666544433333222211 00       0


Q ss_pred             -CCCCceEEEEEeCCC-CccCCCCeEEEEEEEeec
Q 011414          394 -PEQVTSIRVLQLGGN-LAVCPLGMFVLYFSALCD  426 (486)
Q Consensus       394 -~~~~~~v~v~~~~~~-~~~~P~G~~vi~~~t~~~  426 (486)
                       ...++.+|+...+.. +..+|+|+.++++.+..+
T Consensus       343 ~~~~~~~~~v~~~s~~dp~~ap~G~~~~~~~~~~p  377 (501)
T 4dgk_A          343 GLAEDFSLYLHAPCVTDSSLAPEGCGSYYVLAPVP  377 (501)
T ss_dssp             -CCCEEEEEEECGGGTCGGGSSTTCEEEEEEEEEC
T ss_pred             ccccCCceecccCCCCCCCcCCCCCceEEEEEecC
Confidence             012456777777655 588999999988887764

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=99.93  E-value=2.5e-24  Score=221.16  Aligned_cols=332  Identities=13%  Similarity=0.116  Sum_probs=196.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCcccccccccccccccc
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS  102 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (486)
                      +||||||||++||+||+.|+++|++|+||||++++||+++++..++                                  
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~~~~~g----------------------------------   46 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGGRFTNLPYKG----------------------------------   46 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSSEEEETT----------------------------------
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCceeEEeccCC----------------------------------
Confidence            4899999999999999999999999999999999999999976543                                  


Q ss_pred             CCCCceEeecCCCEEEec---ChHHHHHHHhcCcccccchhcccceeeeccCCceeecCCCHHHHhhcccCChHhHHHHH
Q 011414          103 QHPRNFNLDVSGPRVLFC---ADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLM  179 (486)
Q Consensus       103 ~~~~~~~idl~Gp~ll~~---~~~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s~~~~f~~~~l~~~~k~~l~  179 (486)
                           |.+|. ||+.+..   ...+.+++.+.+..  .++...++...+..+|+.+.+|...      ..+++.++..+.
T Consensus        47 -----~~~d~-G~~~~~~~~~~~~~~~l~~~lg~~--~~~~~~~~~~~~~~~g~~~~~~~~~------~~l~~~~~~~~~  112 (421)
T 3nrn_A           47 -----FQLST-GALHMIPHGEDGPLAHLLRILGAK--VEIVNSNPKGKILWEGKIFHYRESW------KFLSVKEKAKAL  112 (421)
T ss_dssp             -----EEEES-SSCSEETTTTSSHHHHHHHHHTCC--CCEEECSSSCEEEETTEEEEGGGGG------GGCC--------
T ss_pred             -----EEEec-CCeEEEccCCChHHHHHHHHhCCc--ceEEECCCCeEEEECCEEEEcCCch------hhCCHhHHHHHH
Confidence                 44555 4654432   23566777777763  3333333322222367777776431      235566666665


Q ss_pred             HHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCC-ChHHHHHHHH-HHhhccCCchhhhhhhchhhHHHHHHHH
Q 011414          180 RFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKL-PHKIKSIVLY-AIAMADYDQEVSEYVLKTRDGINRLALY  257 (486)
Q Consensus       180 ~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l-~~~l~~~l~~-~i~~~~~~~~~~~~~~s~~~~l~~~~~~  257 (486)
                      +++.......             ....+.++.+|++++++ .+.++.++.. .........    ..+++...+..+..+
T Consensus       113 ~~~~~~~~~~-------------~~~~~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~  175 (421)
T 3nrn_A          113 KLLAEIRMNK-------------LPKEEIPADEWIKEKIGENEFLLSVLESFAGWADSVSL----SDLTALELAKEIRAA  175 (421)
T ss_dssp             CCHHHHHTTC-------------CCCCCSBHHHHHHHHTCCCHHHHHHHHHHHHHHHSSCG----GGSBHHHHHHHHHHH
T ss_pred             HHHHHHHhcc-------------CCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCc----ccCCHHHHHHHHHHH
Confidence            5554333210             01234789999998744 4445554432 111111111    224555554444433


Q ss_pred             HHhhhcccCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC-CCC
Q 011414          258 NSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSF  336 (486)
Q Consensus       258 ~~s~g~~g~~~g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~-p~~  336 (486)
                      .    .++   + +.+|+||+++|+++|++.++..|++|+++++|++|..+  ++++  | +++|++++||+||++ +..
T Consensus       176 ~----~~~---g-~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~--~~~v--V-~~~g~~~~ad~Vv~a~~~~  242 (421)
T 3nrn_A          176 L----RWG---G-PGLIRGGCKAVIDELERIIMENKGKILTRKEVVEINIE--EKKV--Y-TRDNEEYSFDVAISNVGVR  242 (421)
T ss_dssp             H----HHC---S-CEEETTCHHHHHHHHHHHHHTTTCEEESSCCEEEEETT--TTEE--E-ETTCCEEECSEEEECSCHH
T ss_pred             h----hcC---C-cceecCCHHHHHHHHHHHHHHCCCEEEcCCeEEEEEEE--CCEE--E-EeCCcEEEeCEEEECCCHH
Confidence            2    222   1 57999999999999999999999999999999999875  5654  6 478899999999964 333


Q ss_pred             CCCCCCcccchhhhhhh-hhhccCCCcceEEEEEEEecCCCCCCCCceEEEeCCCCCCCCCCceEEEEEeCC-CCccCCC
Q 011414          337 TVPGSLASSHQQLQESF-QAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGG-NLAVCPL  414 (486)
Q Consensus       337 ~~~~l~~~~~~~l~~~~-~~l~~~~~~~~v~r~i~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~v~~~~~-~~~~~P~  414 (486)
                      ...+|+ + .+.++..+ +.+. ...........+.++++..+  ...+ .+++..     . .-.+...+. ++..+|+
T Consensus       243 ~~~~ll-~-~~~~~~~~~~~~~-~~~~~~~~~v~l~~~~~~~~--~~~~-~~~~~~-----~-~~~i~~~s~~~p~~ap~  310 (421)
T 3nrn_A          243 ETVKLI-G-RDYFDRDYLKQVD-SIEPSEGIKFNLAVPGEPRI--GNTI-VFTPGL-----M-INGFNEPSALDKSLARE  310 (421)
T ss_dssp             HHHHHH-C-GGGSCHHHHHHHH-TCCCCCEEEEEEEEESSCSS--CSSE-EECTTS-----S-SCEEECGGGTCGGGSCT
T ss_pred             HHHHhc-C-cccCCHHHHHHHh-CCCCCceEEEEEEEcCCccc--CCeE-EEcCCc-----c-eeeEeccCCCCCCcCCC
Confidence            223332 1 11222221 1121 11222344555556766322  2233 344321     1 112233333 3478999


Q ss_pred             CeEEEEEEEeeccCcchHHHHHHHHHHHHhh
Q 011414          415 GMFVLYFSALCDEVNQGKKLLHAALSALQKL  445 (486)
Q Consensus       415 G~~vi~~~t~~~~~~~~~~~l~~~~~~l~~~  445 (486)
                      |+.+++++.+.... +.++.++.+++.|...
T Consensus       311 G~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~  340 (421)
T 3nrn_A          311 GYTLIMAHMALKNG-NVKKAIEKGWEELLEI  340 (421)
T ss_dssp             TEEEEEEEEECTTC-CHHHHHHHHHHHHHHH
T ss_pred             CceEEEEEEeeccc-cHHHHHHHHHHHHHHH
Confidence            99999998877543 3345577777777664

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=99.93  E-value=8.9e-24  Score=217.05  Aligned_cols=336  Identities=14%  Similarity=0.110  Sum_probs=196.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCcccccccccccccccc
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS  102 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (486)
                      +||||||||++||+||++|+++|++|+|||+++++||+++++..++                                  
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G----------------------------------   46 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGRFTNLSYKG----------------------------------   46 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTSSEEEETT----------------------------------
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCCCCceeeeccCC----------------------------------
Confidence            5999999999999999999999999999999999999999976543                                  


Q ss_pred             CCCCceEeecCCCEEEec---ChHHHHHHHhcCcccccchhcccceeeec-c--------CCceeecCCCHHHHhhcccC
Q 011414          103 QHPRNFNLDVSGPRVLFC---ADHAVDLMLKSGASHYLEFKSIDATFMLD-A--------DAKLCSVPDSRAAIFKDKSL  170 (486)
Q Consensus       103 ~~~~~~~idl~Gp~ll~~---~~~l~~~l~~~~~~~y~ef~~~~~~~~~~-~--------~g~~~~vp~s~~~~f~~~~l  170 (486)
                           |.+|. ||..+..   ...+.+++.+.|....+.... .....+. .        .++.+.++.    .  ...+
T Consensus        47 -----~~~d~-G~~~~~~~~~~~~~~~l~~~lg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~  113 (425)
T 3ka7_A           47 -----FQLSS-GAFHMLPNGPGGPLACFLKEVEASVNIVRSE-MTTVRVPLKKGNPDYVKGFKDISFND----F--PSLL  113 (425)
T ss_dssp             -----EEEES-SSCSCBTTGGGSHHHHHHHHTTCCCCEEECC-CCEEEEESSTTCCSSTTCEEEEEGGG----G--GGGS
T ss_pred             -----cEEcC-CCceEecCCCccHHHHHHHHhCCCceEEecC-CceEEeecCCCcccccccccceehhh----h--hhhC
Confidence                 33344 3433221   124566677777643322111 1111110 0        133333321    1  1345


Q ss_pred             ChHhHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChHHHHHHHHHH-hhccCCchhhhhhhchhh
Q 011414          171 GLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAI-AMADYDQEVSEYVLKTRD  249 (486)
Q Consensus       171 ~~~~k~~l~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~l~~~i-~~~~~~~~~~~~~~s~~~  249 (486)
                      ++.++..+.+.+.....               ....+.++.+|++++.-++.++.++.... .......    ..+++..
T Consensus       114 ~~~~~~~~~~~~~~~~~---------------~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~  174 (425)
T 3ka7_A          114 SYKDRMKIALLIVSTRK---------------NRPSGSSLQAWIKSQVSDEWLIKFADSFCGWALSLKS----DEVPVEE  174 (425)
T ss_dssp             CHHHHHHHHHHHHHTTT---------------SCCCSSBHHHHHHHHCCCHHHHHHHHHHHHHHHSSCG----GGSBHHH
T ss_pred             CHHHHHHHHHHHHhhhh---------------cCCCCCCHHHHHHHhcCCHHHHHHHHHHHHHHhCCCc----ccchHHH
Confidence            56666655543322110               01235789999998766666666543211 1111111    2345554


Q ss_pred             HHHHHHHHHHhhhcccCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCE
Q 011414          250 GINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHK  329 (486)
Q Consensus       250 ~l~~~~~~~~s~g~~g~~~g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~  329 (486)
                      .+..+..+.    .++   + ..+|.||++.|+++|.+.++..|++|+++++|++|..+  ++++++|++ +|++++||+
T Consensus       175 ~~~~~~~~~----~~~---~-~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~--~~~~~gv~~-~g~~~~ad~  243 (425)
T 3ka7_A          175 VFEIIENMY----RFG---G-TGIPEGGCKGIIDALETVISANGGKIHTGQEVSKILIE--NGKAAGIIA-DDRIHDADL  243 (425)
T ss_dssp             HHHHHHHHH----HHC---S-CEEETTSHHHHHHHHHHHHHHTTCEEECSCCEEEEEEE--TTEEEEEEE-TTEEEECSE
T ss_pred             HHHHHHHHH----hcC---C-ccccCCCHHHHHHHHHHHHHHcCCEEEECCceeEEEEE--CCEEEEEEE-CCEEEECCE
Confidence            444433321    222   1 56899999999999999999999999999999999987  778878886 588999999


Q ss_pred             EEEC-CCCCCCCCCcccchhh--hhh-hhhhccCCCcceEEEEEEEecCCCCCCCCceEEEeCCCCCCCCCCceEEEEEe
Q 011414          330 LVLD-PSFTVPGSLASSHQQL--QES-FQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQL  405 (486)
Q Consensus       330 VI~~-p~~~~~~l~~~~~~~l--~~~-~~~l~~~~~~~~v~r~i~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~v~~~  405 (486)
                      ||++ |.....+|+.. .+.+  +.. .+.+ +........+..+.+++++..   ...+.+++..     .....+...
T Consensus       244 VV~a~~~~~~~~ll~~-~~~~~~~~~~~~~~-~~~~~~~~~~v~l~~~~~~~~---~~~~~~~~~~-----~~~~~~~~~  313 (425)
T 3ka7_A          244 VISNLGHAATAVLCSE-ALSKEADAAYFKMV-GTLQPSAGIKICLAADEPLVG---HTGVLLTPYT-----RRINGVNEV  313 (425)
T ss_dssp             EEECSCHHHHHHHTTT-TCCTTTTHHHHHHH-HHCCCBEEEEEEEEESSCSSC---SSSEEECCSS-----SSEEEEECG
T ss_pred             EEECCCHHHHHHhcCC-cccccCCHHHHHHh-hCcCCCceEEEEeecCCCccC---cCEEEECCCh-----hhcceEEec
Confidence            9964 33322333211 1111  221 1222 112233445555567877532   2333444321     122334444


Q ss_pred             CC-CCccCCCCeEEEEEEEeecc--CcchHHHHHHHHHHHHhh
Q 011414          406 GG-NLAVCPLGMFVLYFSALCDE--VNQGKKLLHAALSALQKL  445 (486)
Q Consensus       406 ~~-~~~~~P~G~~vi~~~t~~~~--~~~~~~~l~~~~~~l~~~  445 (486)
                      +. ++..+|+|+.++++......  ....++.++.+++.|-..
T Consensus       314 s~~~p~~ap~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~  356 (425)
T 3ka7_A          314 TQADPELAPPGKHLTMCHQYVAPENVKNLESEIEMGLEDLKEI  356 (425)
T ss_dssp             GGTCGGGSCTTCEEEEEEEEECGGGGGGHHHHHHHHHHHHHHH
T ss_pred             cCCCCCcCCCCCeEEEEEeccccccccchHHHHHHHHHHHHHh
Confidence            43 35789999999988765432  112235566666666553

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=99.92  E-value=8.5e-24  Score=220.70  Aligned_cols=330  Identities=15%  Similarity=0.145  Sum_probs=194.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCcccccccccccccc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (486)
                      ..+||||||||++||+||..|+++|++|+|||+++++||+++|++.+                                 
T Consensus        15 ~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GGr~~t~~~~---------------------------------   61 (478)
T 2ivd_A           15 TGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALA---------------------------------   61 (478)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEEEET---------------------------------
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceeeeeccC---------------------------------
Confidence            35799999999999999999999999999999999999999998653                                 


Q ss_pred             ccCCCCceEeecCCCEEEec-ChHHHHHHHhcCcccccchhcc--cceeeeccCCceeecCCCHHHHhhcccCChHhHHH
Q 011414          101 LSQHPRNFNLDVSGPRVLFC-ADHAVDLMLKSGASHYLEFKSI--DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQ  177 (486)
Q Consensus       101 ~~~~~~~~~idl~Gp~ll~~-~~~l~~~l~~~~~~~y~ef~~~--~~~~~~~~~g~~~~vp~s~~~~f~~~~l~~~~k~~  177 (486)
                            .+.+|. |++++.. ...+.+++.+.|+...+.+...  ...+++. +|+.+.+|.+..+++....++..++..
T Consensus        62 ------g~~~~~-g~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~-~g~~~~~p~~~~~~~~~~~~~~~~~~~  133 (478)
T 2ivd_A           62 ------GYLVEQ-GPNSFLDREPATRALAAALNLEGRIRAADPAAKRRYVYT-RGRLRSVPASPPAFLASDILPLGARLR  133 (478)
T ss_dssp             ------TEEEES-SCCCEETTCHHHHHHHHHTTCGGGEECSCSSCCCEEEEE-TTEEEECCCSHHHHHTCSSSCHHHHHH
T ss_pred             ------Ceeeec-ChhhhhhhhHHHHHHHHHcCCcceeeecCccccceEEEE-CCEEEECCCCHHHhccCCCCCHHHHHH
Confidence                  245566 5777655 3467788889998765543321  1234443 788888888776666655555443322


Q ss_pred             HHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChHHHHHHHHHH-hhccCCchhhhhhhchhhHHHHHHH
Q 011414          178 LMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAI-AMADYDQEVSEYVLKTRDGINRLAL  256 (486)
Q Consensus       178 l~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~l~~~i-~~~~~~~~~~~~~~s~~~~l~~~~~  256 (486)
                      +      +...... .        .....+.++.+|+++..-.+.++.++...+ .....  ++  .++++...+..+..
T Consensus       134 ~------~~~~~~~-~--------~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~s~~~~~~~~~~  194 (478)
T 2ivd_A          134 V------AGELFSR-R--------APEGVDESLAAFGRRHLGHRATQVLLDAVQTGIYAG--DV--EQLSVAATFPMLVK  194 (478)
T ss_dssp             H------HGGGGCC-C--------CCTTCCCBHHHHHHHHTCHHHHHHTHHHHHHHHHCC--CT--TTBBHHHHCHHHHH
T ss_pred             H------hhhhhcC-C--------CCCCCCCCHHHHHHHhhCHHHHHHHHHHHhceeecC--CH--HHhhHHHHhHHHHH
Confidence            1      2221110 0        012456899999997533333333332111 11111  11  22455444444333


Q ss_pred             HHHhhhc-------c----------cCCC----cceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEE
Q 011414          257 YNSSIGR-------F----------QNAL----GALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYK  315 (486)
Q Consensus       257 ~~~s~g~-------~----------g~~~----g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~  315 (486)
                      +....+.       .          ....    +.+.+|+||++.|+++|++.+   |++|+++++|++|..+  +++ +
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l---g~~i~~~~~V~~i~~~--~~~-~  268 (478)
T 2ivd_A          195 MEREHRSLILGAIRAQKAQRQAALPAGTAPKLSGALSTFDGGLQVLIDALAASL---GDAAHVGARVEGLARE--DGG-W  268 (478)
T ss_dssp             HHHHHSSHHHHHHHHHHHHTCC----CCSCCCCCCEEEETTCTHHHHHHHHHHH---GGGEESSEEEEEEECC----C-C
T ss_pred             HHHhcCcHHHHHHHhhhccccccCcccccccccccEEEECCCHHHHHHHHHHHh---hhhEEcCCEEEEEEec--CCe-E
Confidence            2211110       0          0000    236799999999999987654   7899999999999876  444 5


Q ss_pred             EEEe---CCCcEEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhhccCCCcceEEEEEEEecCCCCCCCCceEEEeCCCC
Q 011414          316 GVRL---ASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRS  391 (486)
Q Consensus       316 gV~~---~~G~~i~A~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~~~~~~~~~~~~p~~~  391 (486)
                      .|++   .+|++++||+||++ |...+.+++    ++++..+....+......+.+..+.+++++.+.+....+.+|...
T Consensus       269 ~v~~~~~~~g~~~~ad~vV~a~~~~~~~~ll----~~l~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~  344 (478)
T 2ivd_A          269 RLIIEEHGRRAELSVAQVVLAAPAHATAKLL----RPLDDALAALVAGIAYAPIAVVHLGFDAGTLPAPDGFGFLVPAEE  344 (478)
T ss_dssp             EEEEEETTEEEEEECSEEEECSCHHHHHHHH----TTTCHHHHHHHHTCCBCCEEEEEEEECTTSSCCCCSSEEECCGGG
T ss_pred             EEEEeecCCCceEEcCEEEECCCHHHHHHHh----hccCHHHHHHHhcCCCCcEEEEEEEEccccCCCCCceEEEecCCC
Confidence            7877   68888999999965 433222332    223333222223334556777788888875333222334445321


Q ss_pred             CCCCCCceEEEEEeCC-CCccCCCCeEEEEEEEe
Q 011414          392 LFPEQVTSIRVLQLGG-NLAVCPLGMFVLYFSAL  424 (486)
Q Consensus       392 ~~~~~~~~v~v~~~~~-~~~~~P~G~~vi~~~t~  424 (486)
                          ......+...+. ....+|+|..++.+...
T Consensus       345 ----~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~  374 (478)
T 2ivd_A          345 ----QRRMLGAIHASTTFPFRAEGGRVLYSCMVG  374 (478)
T ss_dssp             ----CCSCCEEEEHHHHCGGGBSTTCEEEEEEEE
T ss_pred             ----CCceEEEEEEcccCCCcCCCCCEEEEEEeC
Confidence                011222333222 24567888776655443

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=99.91  E-value=6.5e-23  Score=216.46  Aligned_cols=295  Identities=14%  Similarity=0.079  Sum_probs=184.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCcccccccccccccc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (486)
                      .++||||||||++||+||..|+++|++|+|||+++++||++.|+..+.                                
T Consensus         3 ~~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr~~t~~~~~--------------------------------   50 (520)
T 1s3e_A            3 NKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQK--------------------------------   50 (520)
T ss_dssp             CBCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEECCTT--------------------------------
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCceeecccCC--------------------------------
Confidence            468999999999999999999999999999999999999999976420                                


Q ss_pred             ccCCCCceEeecCCCEEEec-ChHHHHHHHhcCcccccchhcccceeeeccCCceeecCCCHHHHhhcccCChHhHHHHH
Q 011414          101 LSQHPRNFNLDVSGPRVLFC-ADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLM  179 (486)
Q Consensus       101 ~~~~~~~~~idl~Gp~ll~~-~~~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s~~~~f~~~~l~~~~k~~l~  179 (486)
                            .+.+|+ |++++.. ...+.+++.+.|+..+..+...  ..++..+|+.+.++...    . ..+++.+...+.
T Consensus        51 ------g~~~d~-G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~--~~~~~~~g~~~~~~~~~----p-~~~~~~~~~~~~  116 (520)
T 1s3e_A           51 ------VKYVDL-GGSYVGPTQNRILRLAKELGLETYKVNEVE--RLIHHVKGKSYPFRGPF----P-PVWNPITYLDHN  116 (520)
T ss_dssp             ------TSCEES-SCCEECTTCHHHHHHHHHTTCCEEECCCSS--EEEEEETTEEEEECSSS----C-CCCSHHHHHHHH
T ss_pred             ------Cccccc-CceEecCCcHHHHHHHHHcCCcceecccCC--ceEEEECCEEEEecCCC----C-CCCCHHHHHHHH
Confidence                  234566 5776644 3467788888888765543322  12222356665554320    0 012333343444


Q ss_pred             HHHHHHHhhcccCcccccc-ccccccccCCcHHHHHHhcCCChHHHHHHHHHH-hhccCCchhhhhhhchhhHHHHHHHH
Q 011414          180 RFFKLVQGHLSLDESEENN-VRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAI-AMADYDQEVSEYVLKTRDGINRLALY  257 (486)
Q Consensus       180 ~fl~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~l~~~~l~~~l~~~l~~~i-~~~~~~~~~~~~~~s~~~~l~~~~~~  257 (486)
                      +++..+............. .....++.+.++.+|+++...++.++.++.... ....  .++  .++++...+.    +
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~g--~~~--~~~s~~~~~~----~  188 (520)
T 1s3e_A          117 NFWRTMDDMGREIPSDAPWKAPLAEEWDNMTMKELLDKLCWTESAKQLATLFVNLCVT--AET--HEVSALWFLW----Y  188 (520)
T ss_dssp             HHHHHHHHHHTTSCTTCGGGSTTHHHHHTSBHHHHHHHHCSSHHHHHHHHHHHHHHHS--SCT--TTSBHHHHHH----H
T ss_pred             HHHHHHHHHHhhcCcCCCccccchhhhhccCHHHHHHhhCCCHHHHHHHHHHHhhhcC--CCh--HHhHHHHHHH----H
Confidence            4444333221110000000 000123567899999999888888877654321 1111  121  2245544332    2


Q ss_pred             HHhhhc----ccC-CCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE
Q 011414          258 NSSIGR----FQN-ALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (486)
Q Consensus       258 ~~s~g~----~g~-~~g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~  332 (486)
                      +...+.    +.. ..+.+.++.||+++|+++|++.   +|++|++|++|++|..+  ++++ .|++.+|+++.||+||+
T Consensus       189 ~~~~g~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~---lg~~i~~~~~V~~i~~~--~~~v-~v~~~~g~~~~ad~VI~  262 (520)
T 1s3e_A          189 VKQCGGTTRIISTTNGGQERKFVGGSGQVSERIMDL---LGDRVKLERPVIYIDQT--RENV-LVETLNHEMYEAKYVIS  262 (520)
T ss_dssp             HHTTTCHHHHHCSTTSTTSEEETTCTHHHHHHHHHH---HGGGEESSCCEEEEECS--SSSE-EEEETTSCEEEESEEEE
T ss_pred             HhhcCchhhhcccCCCcceEEEeCCHHHHHHHHHHH---cCCcEEcCCeeEEEEEC--CCeE-EEEECCCeEEEeCEEEE
Confidence            222211    000 1122568999999999988764   48899999999999876  4554 48888999999999996


Q ss_pred             C-CCCCCCCCCcccchhhhhhhhhhccCCCcceEEEEEEEecCCCC
Q 011414          333 D-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK  377 (486)
Q Consensus       333 ~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~~  377 (486)
                      + |...+.++.  ++|++|..+....++..++.+.+..+.+++++-
T Consensus       263 a~p~~~l~~l~--~~p~lp~~~~~~i~~~~~~~~~kv~l~~~~~~w  306 (520)
T 1s3e_A          263 AIPPTLGMKIH--FNPPLPMMRNQMITRVPLGSVIKCIVYYKEPFW  306 (520)
T ss_dssp             CSCGGGGGGSE--EESCCCHHHHHHTTSCCBCCEEEEEEECSSCGG
T ss_pred             CCCHHHHccee--eCCCCCHHHHHHHHhCCCcceEEEEEEeCCCcc
Confidence            5 444434442  566777766555455667778888888998863

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=99.90  E-value=2.7e-22  Score=207.85  Aligned_cols=292  Identities=11%  Similarity=0.104  Sum_probs=175.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCccccccccccccc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (486)
                      +.++||||||||++||+||..|+++|++|+|||+++++||++.++..++                               
T Consensus         3 ~~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g-------------------------------   51 (453)
T 2yg5_A            3 TLQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDG-------------------------------   51 (453)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTCCEEEETT-------------------------------
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCceeccccCC-------------------------------
Confidence            4578999999999999999999999999999999999999999876432                               


Q ss_pred             cccCCCCceEeecCCCEEEec-ChHHHHHHHhcCcccccchhcccceeeeccCCceeecCCCHHHHhhcccCChHhHHHH
Q 011414          100 LLSQHPRNFNLDVSGPRVLFC-ADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (486)
Q Consensus       100 ~~~~~~~~~~idl~Gp~ll~~-~~~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s~~~~f~~~~l~~~~k~~l  178 (486)
                              +.+|+ |++++.. ...+.+++.+.|+..+..+......+. ..+|+.+.+....      ..+++.....+
T Consensus        52 --------~~~~~-g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~~~~~~~------~~~~~~~~~~~  115 (453)
T 2yg5_A           52 --------AVLEI-GGQWVSPDQTALISLLDELGLKTFERYREGESVYI-SSAGERTRYTGDS------FPTNETTKKEM  115 (453)
T ss_dssp             --------EEEEC-SCCCBCTTCHHHHHHHHHTTCCEEECCCCSEEEEE-CTTSCEEEECSSS------CSCCHHHHHHH
T ss_pred             --------ceecc-CCeEecCccHHHHHHHHHcCCcccccccCCCEEEE-eCCCceeeccCCC------CCCChhhHHHH
Confidence                    23344 3454432 346778888888876655443222222 2125544442210      01222222222


Q ss_pred             HHHHHHHHh----hcccCccccccccccccccCCcHHHHHHhcCCChHHHHHHHHHHhhccCCchhhhh-hhchhhHHHH
Q 011414          179 MRFFKLVQG----HLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEY-VLKTRDGINR  253 (486)
Q Consensus       179 ~~fl~~~~~----~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~l~~~i~~~~~~~~~~~~-~~s~~~~l~~  253 (486)
                      .+++..+..    .....+..   ......+.+.++.+|++++..++.++.++...+ ...+..++  . ++++...+..
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~s~~~~~~~  189 (453)
T 2yg5_A          116 DRLIDEMDDLAAQIGAEEPWA---HPLARDLDTVSFKQWLINQSDDAEARDNIGLFI-AGGMLTKP--AHSFSALQAVLM  189 (453)
T ss_dssp             HHHHHHHHHHHHHHCSSCGGG---STTHHHHHSSBHHHHHHHHCSCHHHHHHHHHHH-CCCCCCSC--TTSSBHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCCCCCCC---CcchhhhhhccHHHHHHhhcCCHHHHHHHHHHH-HhhcccCC--cccccHHHHHHH
Confidence            222222111    11100000   000123457899999999888888887654322 12222222  2 3455544332


Q ss_pred             HHHHHHhhhcc----cCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCE
Q 011414          254 LALYNSSIGRF----QNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHK  329 (486)
Q Consensus       254 ~~~~~~s~g~~----g~~~g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~  329 (486)
                      +    ...+.+    ....+.+.+++||+++|+++|++   .+|++|++|++|++|..+  +++.+.|++ +|++++||+
T Consensus       190 ~----~~~g~~~~~~~~~~~~~~~~~gG~~~l~~~l~~---~lg~~i~~~~~V~~i~~~--~~~~v~v~~-~~~~~~ad~  259 (453)
T 2yg5_A          190 A----ASAGSFSHLVDEDFILDKRVIGGMQQVSIRMAE---ALGDDVFLNAPVRTVKWN--ESGATVLAD-GDIRVEASR  259 (453)
T ss_dssp             H----HHTTCHHHHHCHHHHTCEEETTCTHHHHHHHHH---HHGGGEECSCCEEEEEEE--TTEEEEEET-TTEEEEEEE
T ss_pred             h----ccCCcHhhhccCCCcceEEEcCChHHHHHHHHH---hcCCcEEcCCceEEEEEe--CCceEEEEE-CCeEEEcCE
Confidence            2    221111    00001256899999999998876   458999999999999887  554245764 788999999


Q ss_pred             EEEC-CCCCCCCCCcccchhhhhhhhhhccCCCcceEEEEEEEecCCC
Q 011414          330 LVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL  376 (486)
Q Consensus       330 VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~  376 (486)
                      ||++ |...+.++.  +++++|..+....+...++.+.+..+.+++++
T Consensus       260 VI~a~p~~~~~~l~--~~p~lp~~~~~~i~~~~~~~~~kv~l~~~~~~  305 (453)
T 2yg5_A          260 VILAVPPNLYSRIS--YDPPLPRRQHQMHQHQSLGLVIKVHAVYETPF  305 (453)
T ss_dssp             EEECSCGGGGGGSE--EESCCCHHHHHHGGGEEECCEEEEEEEESSCG
T ss_pred             EEEcCCHHHHhcCE--eCCCCCHHHHHHHhcCCCcceEEEEEEECCCC
Confidence            9964 444444442  45666665444334444566778777788875

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=99.90  E-value=1.2e-22  Score=211.09  Aligned_cols=349  Identities=13%  Similarity=0.128  Sum_probs=191.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhCC------CcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCccccccccc
Q 011414           22 AFDLIVIGTGLPESVISAAASASG------KSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISN   95 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G------~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (486)
                      ++||||||||++||+||++|+++|      ++|+|||+++++||++.|...++                           
T Consensus         5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG~~~s~~~~g---------------------------   57 (470)
T 3i6d_A            5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVKKDG---------------------------   57 (470)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCTTCCEECCTT---------------------------
T ss_pred             CCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCceEEEeccCC---------------------------
Confidence            489999999999999999999999      99999999999999999975432                           


Q ss_pred             cccccccCCCCceEeecCCCEEEec-ChHHHHHHHhcCcccccchhcccceeeeccCCceeecCCCH--------HHHhh
Q 011414           96 YASRLLSQHPRNFNLDVSGPRVLFC-ADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSR--------AAIFK  166 (486)
Q Consensus        96 ~~~~~~~~~~~~~~idl~Gp~ll~~-~~~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s~--------~~~f~  166 (486)
                                  +.+|. |++.+.. ...+.+++.+.|+...+........+++. +|++..+|...        ..++.
T Consensus        58 ------------~~~d~-G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~p~~~~~~~~  123 (470)
T 3i6d_A           58 ------------YIIER-GPDSFLERKKSAPQLVKDLGLEHLLVNNATGQSYVLV-NRTLHPMPKGAVMGIPTKIAPFVS  123 (470)
T ss_dssp             ------------CCEES-SCCCEETTCTHHHHHHHHTTCCTTEEECCCCCEEEEC-SSCEEECCC---------------
T ss_pred             ------------EEecc-ChhhhhhCCHHHHHHHHHcCCcceeecCCCCccEEEE-CCEEEECCCCcccCCcCchHHhhc
Confidence                        33455 4654433 34677888888887655432233344443 67777776532        11111


Q ss_pred             cccCChHhHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChHHHHHHHHHHhhccCCchhhhhhhc
Q 011414          167 DKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLK  246 (486)
Q Consensus       167 ~~~l~~~~k~~l~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~l~~~i~~~~~~~~~~~~~~s  246 (486)
                      ...++..++...  ........             .....+.++.+|+++..-.+....++... ....+..+.  .+++
T Consensus       124 ~~~~~~~~~~~~--~~~~~~~~-------------~~~~~~~s~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~s  185 (470)
T 3i6d_A          124 TGLFSLSGKARA--AMDFILPA-------------SKTKDDQSLGEFFRRRVGDEVVENLIEPL-LSGIYAGDI--DKLS  185 (470)
T ss_dssp             ------CCSHHH--HHHHHSCC-------------CSSSSCCBHHHHHHHHSCHHHHHHTHHHH-HHHTTCSCT--TTBB
T ss_pred             cCcCCHHHHHHH--hcCcccCC-------------CCCCCCcCHHHHHHHhcCHHHHHHhccch-hcEEecCCH--HHhh
Confidence            222222121110  01111000             12345689999998743333333332211 111122222  2234


Q ss_pred             hhhHHHHHHHHHHhhhccc-----------------CCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEec
Q 011414          247 TRDGINRLALYNSSIGRFQ-----------------NALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQ  309 (486)
Q Consensus       247 ~~~~l~~~~~~~~s~g~~g-----------------~~~g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~  309 (486)
                      +...+..+..+....+...                 ...+.+.++.+|++.|+++|++.+..  ++|+++++|++|..+ 
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~--~~i~~~~~V~~i~~~-  262 (470)
T 3i6d_A          186 LMSTFPQFYQTEQKHRSLILGMKKTRPQGSGQQLTAKKQGQFQTLSTGLQTLVEEIEKQLKL--TKVYKGTKVTKLSHS-  262 (470)
T ss_dssp             HHHHCGGGCC-------------------------------EEEETTCTHHHHHHHHHTCCS--EEEECSCCEEEEEEC-
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHhhccccccccccccCCceEEEeCChHHHHHHHHHHhcCC--CEEEeCCceEEEEEc-
Confidence            4333222211111110000                 00123778999999999988764433  799999999999876 


Q ss_pred             CCCeEEEEEeCCCcEEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhhccCCCcceEEEEEEEecCCCCCCC-CceEEEe
Q 011414          310 NSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDL-SNFLVIF  387 (486)
Q Consensus       310 ~~g~~~gV~~~~G~~i~A~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~~~~~-~~~~~~~  387 (486)
                       +++ +.|++.+|++++||+||+. |...+.+++  .++++....    +......+.+..+.+++++-+.+ ....+.+
T Consensus       263 -~~~-~~v~~~~g~~~~ad~vi~a~p~~~~~~l~--~~~~~~~~~----~~~~~~~~~~v~l~~~~~~~~~~~~~~g~l~  334 (470)
T 3i6d_A          263 -GSC-YSLELDNGVTLDADSVIVTAPHKAAAGML--SELPAISHL----KNMHSTSVANVALGFPEGSVQMEHEGTGFVI  334 (470)
T ss_dssp             -SSS-EEEEESSSCEEEESEEEECSCHHHHHHHT--TTSTTHHHH----HTCEEEEEEEEEEEESSTTCCCSSCSSEEEE
T ss_pred             -CCe-EEEEECCCCEEECCEEEECCCHHHHHHHc--CCchhhHHH----hcCCCCceEEEEEEECchhcCCCCCCeEEEc
Confidence             444 5788889989999999964 443323332  122222222    22345667777778898864332 2334455


Q ss_pred             CCCCCCCCCCceEEEEEeCC--CCccCCCCeEEEEEEEeecc-----CcchHHHHHHHHHHHHhh
Q 011414          388 PPRSLFPEQVTSIRVLQLGG--NLAVCPLGMFVLYFSALCDE-----VNQGKKLLHAALSALQKL  445 (486)
Q Consensus       388 p~~~~~~~~~~~v~v~~~~~--~~~~~P~G~~vi~~~t~~~~-----~~~~~~~l~~~~~~l~~~  445 (486)
                      |...     ...+....+.+  ....+|.|..++.+......     ....++.++.+++.|...
T Consensus       335 ~~~~-----~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  394 (470)
T 3i6d_A          335 SRNS-----DFAITACTWTNKKWPHAAPEGKTLLRAYVGKAGDESIVDLSDNDIINIVLEDLKKV  394 (470)
T ss_dssp             CSTT-----CCSEEEEEEHHHHCGGGSCTTCEEEEEEECCSSCCGGGTSCHHHHHHHHHHHHGGG
T ss_pred             cCCC-----CCCceEEEEEcCcCCCcCCCCCEEEEEEECCCCCccccCCCHHHHHHHHHHHHHHH
Confidence            5432     12233333322  23567888877766542221     123355566666666554

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=99.89  E-value=1.1e-21  Score=204.52  Aligned_cols=329  Identities=15%  Similarity=0.163  Sum_probs=191.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCC--CcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCccccccccccc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYA   97 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G--~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (486)
                      |.++||||||||++||+||++|+++|  ++|+|||+++++||+++|....+                             
T Consensus         2 m~~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~~~~~~~~g-----------------------------   52 (475)
T 3lov_A            2 MSSKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVATYREDG-----------------------------   52 (475)
T ss_dssp             CCSCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTTCCEECSTT-----------------------------
T ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCceeEEEeeCC-----------------------------
Confidence            44689999999999999999999999  99999999999999999975432                             


Q ss_pred             cccccCCCCceEeecCCCEEEec-ChHHHHHHHhcCcccccchhcccceeeeccCCceeecCCC--------HHHHhhcc
Q 011414           98 SRLLSQHPRNFNLDVSGPRVLFC-ADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDS--------RAAIFKDK  168 (486)
Q Consensus        98 ~~~~~~~~~~~~idl~Gp~ll~~-~~~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s--------~~~~f~~~  168 (486)
                                |.+|. |++.+.. ...+.+++.+.|+............+++. +|++..+|..        ...+++..
T Consensus        53 ----------~~~~~-g~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~~-~g~~~~~p~~~~~~~p~~~~~~~~~~  120 (475)
T 3lov_A           53 ----------FTIER-GPDSYVARKHILTDLIEAIGLGEKLVRNNTSQAFILD-TGGLHPIPKGAVMGIPTDLDLFRQTT  120 (475)
T ss_dssp             ----------CCEES-SCCCEETTSTHHHHHHHHTTCGGGEEECCCCCEEEEE-TTEEEECCSSEETTEESCHHHHTTCS
T ss_pred             ----------EEEec-CchhhhcccHHHHHHHHHcCCcceEeecCCCceEEEE-CCEEEECCCcccccCcCchHHHhhcc
Confidence                      33444 4554433 34677888888887655433223344443 6777776653        34555556


Q ss_pred             cCChHhHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChHHHHHHHHHHhhccCCchhhhhhhchh
Q 011414          169 SLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTR  248 (486)
Q Consensus       169 ~l~~~~k~~l~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~l~~~i~~~~~~~~~~~~~~s~~  248 (486)
                      .++..++..+.   ........         .......+.++.+|+++..-.+....++.. +....+..+.  ..+++.
T Consensus       121 ~~~~~~~~~~~---~~~~~~~~---------~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~--~~ls~~  185 (475)
T 3lov_A          121 LLTEEEKQEVA---DLLLHPSD---------SLRIPEQDIPLGEYLRPRLGDALVEKLIEP-LLSGIYAGNI--DQMSTF  185 (475)
T ss_dssp             SSCHHHHHHHH---HHHHSCCT---------TCCCCSSCCBHHHHHHHHHCHHHHHHTHHH-HHHGGGCCCT--TTSBST
T ss_pred             CCChhHHHHhh---CcccCCcc---------cccCCCCCcCHHHHHHHHhCHHHHHHHHHH-HhceeecCCh--HHcCHH
Confidence            66665554222   21111100         001134568999999874222223333321 1111122222  234555


Q ss_pred             hHHHHHHHHHHhhhcc-------c-------------CCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEe
Q 011414          249 DGINRLALYNSSIGRF-------Q-------------NALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTD  308 (486)
Q Consensus       249 ~~l~~~~~~~~s~g~~-------g-------------~~~g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~  308 (486)
                      ..+..+..+....+.+       .             ...+.+.++.+|++.|+++|++.+..  ++|+++++|++|..+
T Consensus       186 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~l~~--~~i~~~~~V~~i~~~  263 (475)
T 3lov_A          186 ATYPQFVANEQKAGSLFEGMRLMRPLDQLPQTPQTTIKATGQFLSLETGLESLIERLEEVLER--SEIRLETPLLAISRE  263 (475)
T ss_dssp             TTCHHHHHHHHHHSSHHHHHHHTCC--------------CCSEEEETTCHHHHHHHHHHHCSS--CEEESSCCCCEEEEE
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHhcccccccccccccccCCCcEEeeCChHHHHHHHHHhhccC--CEEEcCCeeeEEEEe
Confidence            4444443332221110       0             00134788999999999988765433  799999999999887


Q ss_pred             cCCCeEEEEEeCCCcEEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhhccCCCcceEEEEEEEecCCCCCCCCceEEEe
Q 011414          309 QNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIF  387 (486)
Q Consensus       309 ~~~g~~~gV~~~~G~~i~A~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~~~~~~~~~~~~  387 (486)
                        ++. +.|++.+| +++||+||+. |...+.+++  .++++ ..   + +...+..+.+..+.+++++........+.+
T Consensus       264 --~~~-~~v~~~~g-~~~ad~vV~a~p~~~~~~ll--~~~~~-~~---~-~~~~~~~~~~v~l~~~~~~~~~~~g~g~l~  332 (475)
T 3lov_A          264 --DGR-YRLKTDHG-PEYADYVLLTIPHPQVVQLL--PDAHL-PE---L-EQLTTHSTATVTMIFDQQQSLPIEGTGFVV  332 (475)
T ss_dssp             --TTE-EEEECTTC-CEEESEEEECSCHHHHHHHC--TTSCC-HH---H-HTCCEEEEEEEEEEEECCSSCSSSSSEEEE
T ss_pred             --CCE-EEEEECCC-eEECCEEEECCCHHHHHHHc--CccCH-HH---H-hcCCCCeEEEEEEEECCcCCCCCCCEEEEe
Confidence              454 56888888 8999999964 443323332  12222 11   1 223456677777788998722222334555


Q ss_pred             CCCCCCCCCCceEEEEEeCCC--CccCCCCeEEEEEEE
Q 011414          388 PPRSLFPEQVTSIRVLQLGGN--LAVCPLGMFVLYFSA  423 (486)
Q Consensus       388 p~~~~~~~~~~~v~v~~~~~~--~~~~P~G~~vi~~~t  423 (486)
                      |+..     ...+....+.+.  ....|. ..++.+..
T Consensus       333 ~~~~-----~~~~~~~~~~s~~~~~~~p~-~~~l~~~~  364 (475)
T 3lov_A          333 NRRA-----PYSITACTAIDQKWNHSAPD-HTVLRAFV  364 (475)
T ss_dssp             CTTS-----SCSEEEEEEHHHHCTTTCTT-EEEEEEEE
T ss_pred             cCCC-----CCceEEEEEEcccCCCCCCC-cEEEEEEe
Confidence            5432     123443444332  344566 55544433

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=99.89  E-value=2.9e-22  Score=209.00  Aligned_cols=329  Identities=13%  Similarity=0.075  Sum_probs=184.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC--cEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCcccccccccccccc
Q 011414           23 FDLIVIGTGLPESVISAAASASGK--SVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~--~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (486)
                      +||||||||++||+||++|+++|+  +|+|||+++++||++.++...                                 
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~GG~~~t~~~~---------------------------------   49 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGP---------------------------------   49 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSSBTTCCEEECT---------------------------------
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCceEEEecc---------------------------------
Confidence            699999999999999999999999  999999999999999986532                                 


Q ss_pred             ccCCCCceEeecCCCEEEecC----hHHHHHHHhcCcccccchhc-----ccceeeeccCCceeecCCCHHHHhhc-ccC
Q 011414          101 LSQHPRNFNLDVSGPRVLFCA----DHAVDLMLKSGASHYLEFKS-----IDATFMLDADAKLCSVPDSRAAIFKD-KSL  170 (486)
Q Consensus       101 ~~~~~~~~~idl~Gp~ll~~~----~~l~~~l~~~~~~~y~ef~~-----~~~~~~~~~~g~~~~vp~s~~~~f~~-~~l  170 (486)
                           ..+.+|. ||+.+...    ..+.+++.+.|+...+....     ....+++. +|++.++|.+...++.. ..+
T Consensus        50 -----~g~~~d~-G~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~~~~-~g~~~~~p~~~~~~~~~~~~~  122 (477)
T 3nks_A           50 -----NGAIFEL-GPRGIRPAGALGARTLLLVSELGLDSEVLPVRGDHPAAQNRFLYV-GGALHALPTGLRGLLRPSPPF  122 (477)
T ss_dssp             -----TSCEEES-SCCCBCCCHHHHHHHHHHHHHTTCGGGEEEECTTSHHHHCEEEEE-TTEEEECCCSSCC---CCTTS
T ss_pred             -----CCeEEEe-CCCcccCCCcccHHHHHHHHHcCCcceeeecCCCCchhcceEEEE-CCEEEECCCChhhcccccchh
Confidence                 1244555 46665443    24667788888764332211     11234543 78888888764333321 111


Q ss_pred             ChHhHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChHHHHHHHHHHhhccCCchhhhhhhchhhH
Q 011414          171 GLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDG  250 (486)
Q Consensus       171 ~~~~k~~l~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~l~~~i~~~~~~~~~~~~~~s~~~~  250 (486)
                      ...   .+.+.   +.....  +        .....+.++.+|+++..-.+....++...+ ...+..+.  .++++...
T Consensus       123 ~~~---~~~~~---~~~~~~--~--------~~~~~~~s~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~--~~ls~~~~  183 (477)
T 3nks_A          123 SKP---LFWAG---LRELTK--P--------RGKEPDETVHSFAQRRLGPEVASLAMDSLC-RGVFAGNS--RELSIRSC  183 (477)
T ss_dssp             CSC---SSHHH---HTTTTS--C--------CCCSSCCBHHHHHHHHHCHHHHHHTHHHHH-HHHHSSCT--TTBBHHHH
T ss_pred             hhH---HHHHH---HHhhhc--C--------CCCCCCcCHHHHHHHhhCHHHHHHHHHHHh-cccccCCH--HHhhHHHH
Confidence            111   11111   111110  0        112346799999986322222222221110 00111121  23455554


Q ss_pred             HHHHHHHHHhhhcc----------------------cCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEe
Q 011414          251 INRLALYNSSIGRF----------------------QNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTD  308 (486)
Q Consensus       251 l~~~~~~~~s~g~~----------------------g~~~g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~  308 (486)
                      +..+..+....+..                      ......+++++||++.|+++|++.+...|++|+++++|++|..+
T Consensus       184 ~~~l~~~e~~~gsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~g~~i~~~~~V~~i~~~  263 (477)
T 3nks_A          184 FPSLFQAEQTHRSILLGLLLGAGRTPQPDSALIRQALAERWSQWSLRGGLEMLPQALETHLTSRGVSVLRGQPVCGLSLQ  263 (477)
T ss_dssp             CHHHHHHHHHHSCHHHHHHHC-----CCCCHHHHHHHHTTCSEEEETTCTTHHHHHHHHHHHHTTCEEECSCCCCEEEEC
T ss_pred             HHHHHHHHHHcCCHHHHHHHhcccccCCchhhhhhhcccCccEEEECCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEc
Confidence            44433322111100                      00011267899999999999999999999999999999999876


Q ss_pred             cCCCeEEEEEeCCCcEEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhhccCCCcceEEEEEEEecCCCCCCCCceEEEe
Q 011414          309 QNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIF  387 (486)
Q Consensus       309 ~~~g~~~gV~~~~G~~i~A~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~~~~~~~~~~~~  387 (486)
                        +++.+.|++ +|+++.||+||++ |.+...+|+.+..+++..   .+ .......+.+..+.+++++.+.. ..-..+
T Consensus       264 --~~~~~~v~~-~~~~~~ad~vv~a~p~~~~~~ll~~~~~~~~~---~l-~~~~~~~~~~v~l~~~~~~~~~~-~~g~l~  335 (477)
T 3nks_A          264 --AEGRWKVSL-RDSSLEADHVISAIPASVLSELLPAEAAPLAR---AL-SAITAVSVAVVNLQYQGAHLPVQ-GFGHLV  335 (477)
T ss_dssp             --GGGCEEEEC-SSCEEEESEEEECSCHHHHHHHSCGGGHHHHH---HH-HTCCEEEEEEEEEEETTCCCSSC-SSEEEC
T ss_pred             --CCceEEEEE-CCeEEEcCEEEECCCHHHHHHhccccCHHHHH---HH-hcCCCCcEEEEEEEECCCCCCCC-CceEEc
Confidence              444356764 6678999999964 444333333222222222   22 22345556666667888765433 234445


Q ss_pred             CCCCCCCCCCceEEEEEeCCC--CccC-CCCeEEEEEEE
Q 011414          388 PPRSLFPEQVTSIRVLQLGGN--LAVC-PLGMFVLYFSA  423 (486)
Q Consensus       388 p~~~~~~~~~~~v~v~~~~~~--~~~~-P~G~~vi~~~t  423 (486)
                      |+..     ...+....+++.  .... |+|..++.+..
T Consensus       336 ~~~~-----~~~~~~~~~~s~~~~~~~~~~~~~~l~~~~  369 (477)
T 3nks_A          336 PSSE-----DPGVLGIVYDSVAFPEQDGSPPGLRVTVML  369 (477)
T ss_dssp             CTTT-----CSSEEEEECHHHHCGGGSTTTTCEEEEEEE
T ss_pred             cCCC-----CCCceEEEEeccccCCCCCCCCceEEEEEE
Confidence            5432     122333344332  2222 33777765544

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=99.89  E-value=9.2e-22  Score=206.71  Aligned_cols=360  Identities=13%  Similarity=0.078  Sum_probs=197.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCcccccccccccccc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (486)
                      ..+||||||||++||+||+.|+++|++|+|||+++++||+++|+..+                                 
T Consensus        12 ~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~---------------------------------   58 (504)
T 1sez_A           12 SAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQD---------------------------------   58 (504)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEET---------------------------------
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccC---------------------------------
Confidence            46899999999999999999999999999999999999999997643                                 


Q ss_pred             ccCCCCceEeecCCCEEEec-ChHHHHHHHhcCcccccchhcccc-eeeeccCCceeecCCCHHHHhhcccCChHhHHHH
Q 011414          101 LSQHPRNFNLDVSGPRVLFC-ADHAVDLMLKSGASHYLEFKSIDA-TFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (486)
Q Consensus       101 ~~~~~~~~~idl~Gp~ll~~-~~~l~~~l~~~~~~~y~ef~~~~~-~~~~~~~g~~~~vp~s~~~~f~~~~l~~~~k~~l  178 (486)
                            .+.+|. |++++.. ...+.+++.+.|+.....|..... .+++ .+|+.+.+|.+...++....++..++..+
T Consensus        59 ------g~~~~~-g~~~~~~~~~~~~~~~~~lgl~~~~~~~~~~~~~~~~-~~g~~~~~p~~~~~~~~~~~~~~~~~~~~  130 (504)
T 1sez_A           59 ------GLIWDE-GANTMTESEGDVTFLIDSLGLREKQQFPLSQNKRYIA-RNGTPVLLPSNPIDLIKSNFLSTGSKLQM  130 (504)
T ss_dssp             ------TEEEES-SCCCBCCCSHHHHHHHHHTTCGGGEECCSSCCCEEEE-SSSSEEECCSSHHHHHHSSSSCHHHHHHH
T ss_pred             ------CeEEec-CCcccccCcHHHHHHHHHcCCcccceeccCCCceEEE-ECCeEEECCCCHHHHhccccCCHHHHHHH
Confidence                  244566 4776643 346788899999877666543222 3344 48888889988766666555655444332


Q ss_pred             HHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChHHHHHHHH-HHhhccCCchhhhhhhchhhHHHHHHHH
Q 011414          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLY-AIAMADYDQEVSEYVLKTRDGINRLALY  257 (486)
Q Consensus       179 ~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~l~~-~i~~~~~~~~~~~~~~s~~~~l~~~~~~  257 (486)
                      .  ..........      ..  .....+.++.+|+++..-++.++.++.. .....  ..++  .++++...+..+..+
T Consensus       131 ~--~~~~~~~~~~------~~--~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~s~~~~~~~~~~~  196 (504)
T 1sez_A          131 L--LEPILWKNKK------LS--QVSDSHESVSGFFQRHFGKEVVDYLIDPFVAGTC--GGDP--DSLSMHHSFPELWNL  196 (504)
T ss_dssp             H--THHHHC------------------CCCBHHHHHHHHHCHHHHHTTHHHHHHHHH--SCCG--GGSBHHHHCHHHHHH
T ss_pred             h--HhhhccCccc------cc--ccCCCCccHHHHHHHHcCHHHHHHHHHHHHcccc--CCCh--HHhhHHHHhHHHHHH
Confidence            1  1111110000      00  0123458999999875333333333321 11111  1122  224544433222221


Q ss_pred             HHh------------hhcccC-------------CCcceEeecCCcchHHHHHHHHHHHcC-cEEEeCCceeEEEEecCC
Q 011414          258 NSS------------IGRFQN-------------ALGALIYPIYGQGELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNS  311 (486)
Q Consensus       258 ~~s------------~g~~g~-------------~~g~~~~p~gG~~~L~qal~r~~~~~G-g~i~l~~~V~~I~~~~~~  311 (486)
                      ...            +...+.             ....+++++||+++|+++|++   .+| ++|++|++|++|..+  +
T Consensus       197 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~l~~~l~~---~l~~~~i~~~~~V~~I~~~--~  271 (504)
T 1sez_A          197 EKRFGSVILGAIRSKLSPKNEKKQGPPKTSANKKRQRGSFSFLGGMQTLTDAICK---DLREDELRLNSRVLELSCS--C  271 (504)
T ss_dssp             HHHTSCHHHHHHHHTTC----------CCCSCCSTTCSCBEETTCTHHHHHHHHT---TSCTTTEETTCCEEEEEEE--C
T ss_pred             HHHhCCHHHHHHHhhhcccccccccccchhhccccCCceEeeCcHHHHHHHHHHh---hcccceEEcCCeEEEEEec--C
Confidence            111            000000             001256899999999998875   566 899999999999987  3


Q ss_pred             Ce-----EEEEEeC--CC---cEEEcCEEEEC-CCCCCCCCCc-ccchhhhhhhhhhccCCCcceEEEEEEEecCCCCC-
Q 011414          312 GS-----YKGVRLA--SG---QDILSHKLVLD-PSFTVPGSLA-SSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP-  378 (486)
Q Consensus       312 g~-----~~gV~~~--~G---~~i~A~~VI~~-p~~~~~~l~~-~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~~~-  378 (486)
                      ++     .+.|++.  +|   ++++||+||++ |...+.+++. +..++++...  + +......+.+..+.+++++-+ 
T Consensus       272 ~~~~~~~~~~v~~~~~~g~~~~~~~ad~VI~a~p~~~l~~ll~~~~~~~~~~~~--l-~~~~~~~~~~v~l~~~~~~~~~  348 (504)
T 1sez_A          272 TEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKSMKIAKRGNPFLLNF--I-PEVDYVPLSVVITTFKRENVKY  348 (504)
T ss_dssp             SSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHHHHHTSEEESSSSBCCCTT--S-CCCCEEEEEEEEEEEEGGGBSS
T ss_pred             CCCcccceEEEEEcCCCCccceeEECCEEEECCCHHHHHHHhhcccCCcccHHH--H-hcCCCCceEEEEEEEchhhcCC
Confidence            33     2456554  46   57899999975 4333334321 0001122111  1 222334566666667776422 


Q ss_pred             CCCceEEEeCCCCCCCCCCceEEEEEeC--CCCccCCCCeEEEEEEEeecc-----CcchHHHHHHHHHHHHhh
Q 011414          379 DLSNFLVIFPPRSLFPEQVTSIRVLQLG--GNLAVCPLGMFVLYFSALCDE-----VNQGKKLLHAALSALQKL  445 (486)
Q Consensus       379 ~~~~~~~~~p~~~~~~~~~~~v~v~~~~--~~~~~~P~G~~vi~~~t~~~~-----~~~~~~~l~~~~~~l~~~  445 (486)
                      ......+.+|+.....  .-.++...++  ..+..+|+|+.++........     ....++.++.+++.|-..
T Consensus       349 ~~~~~~~l~~~~~~~~--g~~~~~~~~~s~~~~~~~p~g~~~l~~~~~g~~~~~~~~~~~ee~~~~v~~~L~~~  420 (504)
T 1sez_A          349 PLEGFGVLVPSKEQQH--GLKTLGTLFSSMMFPDRAPNNVYLYTTFVGGSRNRELAKASRTELKEIVTSDLKQL  420 (504)
T ss_dssp             CCCSSEEECCGGGGGG--TCCSSEEEEHHHHCGGGSCTTEEEEEEEEESTTCGGGTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCceEEEcCCCCCCC--CCccceEEeeccccCCcCCCCCEEEEEEeCCCCcccccCCCHHHHHHHHHHHHHHH
Confidence            2223455666432100  0011112222  223467989877655443221     112345555555555543

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=99.89  E-value=6.8e-23  Score=215.56  Aligned_cols=244  Identities=16%  Similarity=0.131  Sum_probs=142.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhC-CCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCcccccccccccccc
Q 011414           22 AFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~-G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (486)
                      .+||||||||++||+||++|+++ |++|+|||+++++||+++|+...                                 
T Consensus        10 ~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~GG~~~T~~~~---------------------------------   56 (513)
T 4gde_A           10 SVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTP---------------------------------   56 (513)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCCGGGCEEECT---------------------------------
T ss_pred             CCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCcCCeeeEEec---------------------------------
Confidence            58999999999999999999985 99999999999999999985321                                 


Q ss_pred             ccCCCCceEeecCCCEEEecCh-HHHHHHHhcCcccccchhcccce-eeeccCCceeecCCCHHHHhhcccCChHhHHHH
Q 011414          101 LSQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDAT-FMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (486)
Q Consensus       101 ~~~~~~~~~idl~Gp~ll~~~~-~l~~~l~~~~~~~y~ef~~~~~~-~~~~~~g~~~~vp~s~~~~f~~~~l~~~~k~~l  178 (486)
                           .+|.+|. ||++++... .+.+++.+.+... .+|....+. +++. +|+++++|... .+   ..+........
T Consensus        57 -----~G~~~D~-G~h~~~~~~~~v~~l~~e~~~~~-~~~~~~~~~~~i~~-~g~~~~~p~~~-~~---~~~~~~~~~~~  124 (513)
T 4gde_A           57 -----EGFLYDV-GGHVIFSHYKYFDDCLDEALPKE-DDWYTHQRISYVRC-QGQWVPYPFQN-NI---SMLPKEEQVKC  124 (513)
T ss_dssp             -----TSCEEES-SCCCCCCCBHHHHHHHHHHSCSG-GGEEEEECCEEEEE-TTEEEESSGGG-GG---GGSCHHHHHHH
T ss_pred             -----CCEEEEe-CceEecCCCHHHHHHHHHhCCcc-ceeEEecCceEEEE-CCeEeecchhh-hh---hhcchhhHHHH
Confidence                 2456777 688876655 4566666655422 233333322 3443 78888887531 11   12222222222


Q ss_pred             -HHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChHHHHHHH--HHHhhccCCchhhhhhhchhhHH----
Q 011414          179 -MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVL--YAIAMADYDQEVSEYVLKTRDGI----  251 (486)
Q Consensus       179 -~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~l~--~~i~~~~~~~~~~~~~~s~~~~l----  251 (486)
                       ..++.......            .......++.+|+.+.. .+.+.+.+.  +.-.......    .++++....    
T Consensus       125 ~~~~~~~~~~~~------------~~~~~~~s~~~~~~~~~-g~~l~~~~~~~~~~~~~~~~~----~~ls~~~~~~~~~  187 (513)
T 4gde_A          125 IDGMIDAALEAR------------VANTKPKTFDEWIVRMM-GTGIADLFMRPYNFKVWAVPT----TKMQCAWLGERVA  187 (513)
T ss_dssp             HHHHHHHHHHHH------------TCCSCCCSHHHHHHHHH-HHHHHHHTHHHHHHHHHSSCG----GGBCSGGGCSSCC
T ss_pred             HHHHHHHHHhhh------------cccccccCHHHHHHHhh-hhhhhhhhcchhhhhhccCCh----HHhhHHHHHHhhc
Confidence             22222211110            11233467888876421 122222211  1111111111    112221111    


Q ss_pred             -----HHHHHHHHhh--hcccCCCcceEe-ecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCc
Q 011414          252 -----NRLALYNSSI--GRFQNALGALIY-PIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ  323 (486)
Q Consensus       252 -----~~~~~~~~s~--g~~g~~~g~~~~-p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~  323 (486)
                           ..+...+...  ..++.. ..+.+ ++||++.|+++|++.+...|++++++++|++|..+  ++   .|++.+|+
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~gG~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~--~~---~v~~~~G~  261 (513)
T 4gde_A          188 APNLKAVTTNVILGKTAGNWGPN-ATFRFPARGGTGGIWIAVANTLPKEKTRFGEKGKVTKVNAN--NK---TVTLQDGT  261 (513)
T ss_dssp             CCCHHHHHHHHHHTCCCCSCBTT-BEEEEESSSHHHHHHHHHHHTSCGGGEEESGGGCEEEEETT--TT---EEEETTSC
T ss_pred             ccchhhhhhhhhhcccccccccc-cceeecccCCHHHHHHHHHHHHHhcCeeeecceEEEEEEcc--CC---EEEEcCCC
Confidence                 1111111110  111111 12444 58999999999999999999999999999999875  44   35578999


Q ss_pred             EEEcCEEEEC
Q 011414          324 DILSHKLVLD  333 (486)
Q Consensus       324 ~i~A~~VI~~  333 (486)
                      ++.||+||++
T Consensus       262 ~~~ad~vI~t  271 (513)
T 4gde_A          262 TIGYKKLVST  271 (513)
T ss_dssp             EEEEEEEEEC
T ss_pred             EEECCEEEEC
Confidence            9999999975

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=99.88  E-value=5.2e-22  Score=208.17  Aligned_cols=295  Identities=15%  Similarity=0.117  Sum_probs=177.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCcccccccccccccccc
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS  102 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (486)
                      +||||||||++||+||..|+++|++|+|||+++++||++.|++.+                                   
T Consensus        40 ~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GGr~~t~~~~-----------------------------------   84 (495)
T 2vvm_A           40 WDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNID-----------------------------------   84 (495)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSBTTCCEEEET-----------------------------------
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCCCCcceecccC-----------------------------------
Confidence            899999999999999999999999999999999999999997643                                   


Q ss_pred             CCCCceEeecCCCEEEec-ChHHHHHHHhcCcccccchhc----ccceeeeccC--CceeecCCCHHHHhhcccCChHhH
Q 011414          103 QHPRNFNLDVSGPRVLFC-ADHAVDLMLKSGASHYLEFKS----IDATFMLDAD--AKLCSVPDSRAAIFKDKSLGLMEK  175 (486)
Q Consensus       103 ~~~~~~~idl~Gp~ll~~-~~~l~~~l~~~~~~~y~ef~~----~~~~~~~~~~--g~~~~vp~s~~~~f~~~~l~~~~k  175 (486)
                          .+.+|+ |++++.. ...+.+++.+.|+.+.+....    ....+.+. +  |+...+|..  +...      .-.
T Consensus        85 ----g~~~d~-G~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~--~~~~------~~~  150 (495)
T 2vvm_A           85 ----GYPYEM-GGTWVHWHQSHVWREITRYKMHNALSPSFNFSRGVNHFQLR-TNPTTSTYMTHE--AEDE------LLR  150 (495)
T ss_dssp             ----TEEEEC-SCCCBCTTSHHHHHHHHHTTCTTCEEESCCCSSSCCEEEEE-SSTTCCEEECHH--HHHH------HHH
T ss_pred             ----CeeecC-CCeEecCccHHHHHHHHHcCCcceeecccccCCCceEEEec-CCCCceeecCHH--HHHH------HHH
Confidence                244666 5776643 346778888888754433321    12233332 3  455555431  1110      001


Q ss_pred             HHHHHHHH----HHHhhcccCccccccccccccccCCcHHHHHHhcC--CChHHHHHHHHHHhhccCCchhhhhhhchhh
Q 011414          176 NQLMRFFK----LVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMK--LPHKIKSIVLYAIAMADYDQEVSEYVLKTRD  249 (486)
Q Consensus       176 ~~l~~fl~----~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~--l~~~l~~~l~~~i~~~~~~~~~~~~~~s~~~  249 (486)
                      ..+.+|++    ..+..... +...........+.+.++.+||++++  +++.++.++...+... +..+.  ..+++..
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~s~~~  226 (495)
T 2vvm_A          151 SALHKFTNVDGTNGRTVLPF-PHDMFYVPEFRKYDEMSYSERIDQIRDELSLNERSSLEAFILLC-SGGTL--ENSSFGE  226 (495)
T ss_dssp             HHHHHHHCSSSSTTTTTCSC-TTSTTSSTTHHHHHTSBHHHHHHHHGGGCCHHHHHHHHHHHHHH-HSSCT--TTSBHHH
T ss_pred             HHHHHHHccchhhhhhcCCC-CCCcccCcchhhhhhhhHHHHHHHhhccCCHHHHHHHHHHHHHh-cCCCc--chhhHHH
Confidence            11222222    01000000 00000000012345789999999887  8887776654322111 11111  2245554


Q ss_pred             HHHHHHHHHHhhhcccCCCcceEeecCCcchHHHHHHHHHHHcC-cEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcC
Q 011414          250 GINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSH  328 (486)
Q Consensus       250 ~l~~~~~~~~s~g~~g~~~g~~~~p~gG~~~L~qal~r~~~~~G-g~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~  328 (486)
                      .+..+......+..+... ...+++.||+++|+++|.+.+...| ++|+++++|++|..+  ++. +.|++.+|++++||
T Consensus       227 ~~~~~~~~~~~~~~~~~~-~~~~~~~gG~~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~--~~~-v~v~~~~g~~~~ad  302 (495)
T 2vvm_A          227 FLHWWAMSGYTYQGCMDC-LMSYKFKDGQSAFARRFWEEAAGTGRLGYVFGCPVRSVVNE--RDA-ARVTARDGREFVAK  302 (495)
T ss_dssp             HHHHHHHTTSSHHHHHHH-HHSEEETTCHHHHHHHHHHHHHTTTCEEEESSCCEEEEEEC--SSS-EEEEETTCCEEEEE
T ss_pred             HHHHHHHcCCCHHHHHhh-hceEEeCCCHHHHHHHHHHHhhhcCceEEEeCCEEEEEEEc--CCE-EEEEECCCCEEEcC
Confidence            443322110011000000 1145789999999999999999898 999999999999876  444 56888889899999


Q ss_pred             EEEEC-CCCCCCCCCcccchhhhhhhhhhccCCCcceEEEEEEEecCCC
Q 011414          329 KLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL  376 (486)
Q Consensus       329 ~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~  376 (486)
                      +||+. |...+..+  .++|++|..+....+...+..+.+..+.+++++
T Consensus       303 ~vI~a~~~~~l~~i--~~~p~lp~~~~~ai~~~~~~~~~kv~l~~~~~~  349 (495)
T 2vvm_A          303 RVVCTIPLNVLSTI--QFSPALSTERISAMQAGHVSMCTKVHAEVDNKD  349 (495)
T ss_dssp             EEEECCCGGGGGGS--EEESCCCHHHHHHHHHCCCCCCEEEEEEESCGG
T ss_pred             EEEECCCHHHHhhe--eeCCCCCHHHHHHHHhcCCCceeEEEEEECCcc
Confidence            99964 44333443  245666665444334445666778888888875

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=99.84  E-value=2e-20  Score=195.42  Aligned_cols=344  Identities=13%  Similarity=0.113  Sum_probs=189.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCC-CcEEEEccCCCCCCCcccc-chhhhhhhhhcCCCCCCCCCCCccccccccccc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGSHFSSL-SIADLTHFLNSHSTPSSVCPDPLYSDVEISNYA   97 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G-~~VlvlE~~~~~GG~~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (486)
                      +..+||+|||||++||++|..|+++| ++|+|+|+++++||++.++ ..+                              
T Consensus         7 ~~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~GG~~~~~~~~~------------------------------   56 (484)
T 4dsg_A            7 LLTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRSFLDEN------------------------------   56 (484)
T ss_dssp             CCSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSSGGGCEEECTT------------------------------
T ss_pred             ccCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCCCeeeeeecCC------------------------------
Confidence            35689999999999999999999999 8999999999999999985 222                              


Q ss_pred             cccccCCCCceEeecCCCEEEecCh-HHHHHHHhcCcccccchhcccceeeeccCCceeecCCCHHHHhhcccCChHhHH
Q 011414           98 SRLLSQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKN  176 (486)
Q Consensus        98 ~~~~~~~~~~~~idl~Gp~ll~~~~-~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s~~~~f~~~~l~~~~k~  176 (486)
                               .+.+|. |++.++... .+.+++.+.. .++.....  ..+++. +|+++.+|...  .+  ..++...+.
T Consensus        57 ---------g~~~~~-g~~~~~~~~~~~~~l~~~~~-~~~~~~~~--~~~~~~-~g~~~~~P~~~--~~--~~l~~~~~~  118 (484)
T 4dsg_A           57 ---------GFTWDL-GGHVIFSHYQYFDDVMDWAV-QGWNVLQR--ESWVWV-RGRWVPYPFQN--NI--HRLPEQDRK  118 (484)
T ss_dssp             ---------SCEEES-SCCCBCCSBHHHHHHHHHHC-SCEEEEEC--CCEEEE-TTEEEESSGGG--CG--GGSCHHHHH
T ss_pred             ---------CcEEee-CCcccccChHHHHHHHHHHh-hhhhhccC--ceEEEE-CCEEEEeCccc--hh--hhCCHHHHH
Confidence                     345566 466655444 4455555543 33332222  123333 78898888421  11  223333332


Q ss_pred             H-HHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChHHHH----HHHHHHhhccCCchhhhhhhchhhH-
Q 011414          177 Q-LMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS----IVLYAIAMADYDQEVSEYVLKTRDG-  250 (486)
Q Consensus       177 ~-l~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~----~l~~~i~~~~~~~~~~~~~~s~~~~-  250 (486)
                      . +..++.. ...             .....+.++.+|+++. +.+.+.+    .+...+..  .  ++  .++++... 
T Consensus       119 ~~~~~ll~~-~~~-------------~~~~~~~s~~e~~~~~-~g~~~~~~~~~p~~~~v~~--~--~~--~~ls~~~~~  177 (484)
T 4dsg_A          119 RCLDELVRS-HAR-------------TYTEPPNNFEESFTRQ-FGEGIADIFMRPYNFKVWA--V--PP--CLMSTEWVE  177 (484)
T ss_dssp             HHHHHHHHH-HHC-------------CCSSCCSSHHHHHHHH-HHHHHCCCCCHHHHHHHHS--S--CG--GGBCSSSCT
T ss_pred             HHHHHHHHH-Hhc-------------cCCCCCCCHHHHHHHH-hHHHHHHHHHHHHHhhhcC--C--CH--HHhcHHHHh
Confidence            2 2233332 100             0123467899999853 2222111    11111111  1  11  12333221 


Q ss_pred             -------HHH-HHHHHHhhhc--ccCCCcceEeec-CCcchHHHHHHHHHHHcCcEEEeC--CceeEEEEecCCCeEEEE
Q 011414          251 -------INR-LALYNSSIGR--FQNALGALIYPI-YGQGELPQAFCRRAAVKGCLYVLR--MPVISLLTDQNSGSYKGV  317 (486)
Q Consensus       251 -------l~~-~~~~~~s~g~--~g~~~g~~~~p~-gG~~~L~qal~r~~~~~Gg~i~l~--~~V~~I~~~~~~g~~~gV  317 (486)
                             +.. +...+.....  ++ ..+.|.||. ||++.|+++|++.+..  .+|+++  ++|++|..+  ++   +|
T Consensus       178 ~r~~~~~l~~~~~~~~~~~~~~~~~-~~~~f~yp~~gG~~~l~~~la~~l~~--~~i~~~~~~~V~~I~~~--~~---~v  249 (484)
T 4dsg_A          178 ERVAPVDLERIRRNIQENRDDLGWG-PNATFRFPQRGGTGIIYQAIKEKLPS--EKLTFNSGFQAIAIDAD--AK---TI  249 (484)
T ss_dssp             TTSCCCCHHHHHHHHHHTCCCCCCS-TTSEEEEESSSCTHHHHHHHHHHSCG--GGEEECGGGCEEEEETT--TT---EE
T ss_pred             ccccCCCHHHHHHHHhhcccccCCC-ccceEEeecCCCHHHHHHHHHhhhhh--CeEEECCCceeEEEEec--CC---EE
Confidence                   111 1111111000  11 113377886 8999999999875433  289999  569999865  45   35


Q ss_pred             EeCCCcEEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhhccCCCcceEEEEEEEecCCCCCC-CCceEEEeCCCCCCCC
Q 011414          318 RLASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPD-LSNFLVIFPPRSLFPE  395 (486)
Q Consensus       318 ~~~~G~~i~A~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~~~~-~~~~~~~~p~~~~~~~  395 (486)
                      ++++|+++.||+||++ |...+.+++.+..+++++......+...+..+....+.++.+.... .....+.+|....   
T Consensus       250 ~~~~G~~~~ad~VI~a~p~~~~~~ll~~~~~~~~~~~~~~l~~l~y~s~~~v~l~~~~~~~~~~~~~~~i~vp~~~~---  326 (484)
T 4dsg_A          250 TFSNGEVVSYDYLISTVPFDNLLRMTKGTGFKGYDEWPAIADKMVYSSTNVIGIGVKGTPPPHLKTACWLYFPEDTS---  326 (484)
T ss_dssp             EETTSCEEECSEEEECSCHHHHHHHEECSSCTTGGGHHHHHHHCCEEEEEEEEEEEESCCCGGGTTCCEEECCSTTC---
T ss_pred             EECCCCEEECCEEEECCCHHHHHHHhhccCCCCCHHHHHHHhCCCcCceEEEEEEEcCCCcccCCCCeEEEEEcCCC---
Confidence            5689999999999965 4333233321111122332222222334555556656677764321 2345667775432   


Q ss_pred             CCceEEEEEeCCC-CccCCCCeEEEEEEEeecc--CcchHHHHHHHHHHHHhh
Q 011414          396 QVTSIRVLQLGGN-LAVCPLGMFVLYFSALCDE--VNQGKKLLHAALSALQKL  445 (486)
Q Consensus       396 ~~~~v~v~~~~~~-~~~~P~G~~vi~~~t~~~~--~~~~~~~l~~~~~~l~~~  445 (486)
                        +...+..+++- +..+|+|+.++++......  ..+.++.++.+++.|...
T Consensus       327 --~~~ri~~~s~~~p~~ap~g~~~l~~e~~~~~~~~~~d~~l~~~a~~~L~~~  377 (484)
T 4dsg_A          327 --PFYRATVFSNYSKYNVPEGHWSLMLEVSESKYKPVNHSTLIEDCIVGCLAS  377 (484)
T ss_dssp             --SCSEEECGGGTCGGGSCTTEEEEEEEEEEBTTBCCCTTSHHHHHHHHHHHT
T ss_pred             --eEEEEEeecCCCcccCCCCeEEEEEEEecCcCCcCCHHHHHHHHHHHHHHc
Confidence              23345555554 4679999988876654321  123467777787777764

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=99.81  E-value=2.2e-19  Score=189.26  Aligned_cols=279  Identities=15%  Similarity=0.153  Sum_probs=154.4

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCC-CcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCccccccccccc
Q 011414           19 EPTAFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYA   97 (486)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G-~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (486)
                      .+..+||||||||++||+||..|+++| ++|+|||+++++||++.|+...                              
T Consensus         5 ~~~~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGGr~~t~~~~------------------------------   54 (516)
T 1rsg_A            5 SPAKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGY------------------------------   54 (516)
T ss_dssp             -CEEEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBTTCCEEECG------------------------------
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCceeeeecC------------------------------
Confidence            355689999999999999999999999 9999999999999999997531                              


Q ss_pred             cccccCCCCceEeecCCCEEEecC--hHHHHHHHhcCcccccchhcccceeeeccCCceeecCCCHHHHhhcccCCh-Hh
Q 011414           98 SRLLSQHPRNFNLDVSGPRVLFCA--DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGL-ME  174 (486)
Q Consensus        98 ~~~~~~~~~~~~idl~Gp~ll~~~--~~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s~~~~f~~~~l~~-~~  174 (486)
                              ..+.+|+ |++++...  .++.+++.+.++...      ...+.+ .+++...++.+...+........ .-
T Consensus        55 --------~G~~~D~-G~~~~~~~~~~~~~~~~~~lg~~~~------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (516)
T 1rsg_A           55 --------QGRKYDI-GASWHHDTLTNPLFLEEAQLSLNDG------RTRFVF-DDDNFIYIDEERGRVDHDKELLLEIV  118 (516)
T ss_dssp             --------GGCEEES-SCCEECCTTTCHHHHHHHHHHHHHC------CCCEEC-CCCCCEEEETTTEECTTCTTTCHHHH
T ss_pred             --------CCcEEec-CCeEEecCCCChHHHHHHHhCCCCc------ceeEEE-CCCCEEEEcCCCccccccHHHHHHHH
Confidence                    1245677 57777532  355555555443211      001111 13333222221111100000000 00


Q ss_pred             HHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhc------CCChHHHHHHHHHHh---h-ccCCchhhhhh
Q 011414          175 KNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKM------KLPHKIKSIVLYAIA---M-ADYDQEVSEYV  244 (486)
Q Consensus       175 k~~l~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~------~l~~~l~~~l~~~i~---~-~~~~~~~~~~~  244 (486)
                      ...+.++....   ...          .....+.++.+|++++      .+++....++...+.   . .....    ..
T Consensus       119 ~~~~~~~~~~~---~~~----------~~~~~d~s~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~----~~  181 (516)
T 1rsg_A          119 DNEMSKFAELE---FHQ----------HLGVSDCSFFQLVMKYLLQRRQFLTNDQIRYLPQLCRYLELWHGLDW----KL  181 (516)
T ss_dssp             HHHHHHHHHHH---C-----------------CCBHHHHHHHHHHHHGGGSCHHHHHHHHHHHGGGHHHHTBCT----TT
T ss_pred             HHHHHHHHHHH---hhh----------ccCCCCCCHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHhCCCh----HH
Confidence            11122222211   000          0123457888887642      233322222111110   0 00011    11


Q ss_pred             hchhhHHHHHHHHHHhhhcccCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcE
Q 011414          245 LKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQD  324 (486)
Q Consensus       245 ~s~~~~l~~~~~~~~s~g~~g~~~g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~  324 (486)
                      +++..       +   +....   +...++++ ++.|+++|++.+.  +++|++|++|++|..+  ++..+.|++.+|++
T Consensus       182 ~s~~~-------~---~~~~~---~~~~~~~g-~~~l~~~l~~~l~--~~~i~~~~~V~~I~~~--~~~~v~v~~~~g~~  243 (516)
T 1rsg_A          182 LSAKD-------T---YFGHQ---GRNAFALN-YDSVVQRIAQSFP--QNWLKLSCEVKSITRE--PSKNVTVNCEDGTV  243 (516)
T ss_dssp             SBHHH-------H---CCCCS---SCCEEESC-HHHHHHHHHTTSC--GGGEETTCCEEEEEEC--TTSCEEEEETTSCE
T ss_pred             CChHH-------H---Hhhcc---CcchhhhC-HHHHHHHHHHhCC--CCEEEECCEEEEEEEc--CCCeEEEEECCCcE
Confidence            22211       0   00111   11356777 8899888765332  3689999999999875  33336788899999


Q ss_pred             EEcCEEEEC-CCCCCCCC---------CcccchhhhhhhhhhccCCCcceEEEEEEEecCCCCC
Q 011414          325 ILSHKLVLD-PSFTVPGS---------LASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP  378 (486)
Q Consensus       325 i~A~~VI~~-p~~~~~~l---------~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~~~  378 (486)
                      ++||+||++ |...+...         ...+.|+||..+....+...++.+.|.++.+++++=+
T Consensus       244 ~~ad~VI~t~p~~~l~~~~~~~~~~~~~i~f~P~Lp~~~~~ai~~~~~~~~~Kv~l~f~~~fW~  307 (516)
T 1rsg_A          244 YNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIFEFEECCWS  307 (516)
T ss_dssp             EEEEEEEECCCHHHHHGGGSSCSCSTTCCEEESCCCHHHHHHTTSSCCCCCEEEEEEESSCCSC
T ss_pred             EECCEEEECCCHHHhhhccccccccccceEecCCCCHHHHHHHHhCCCCcceEEEEEeCCCCCC
Confidence            999999975 33322110         1246778888777666677788899999999998643

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=99.78  E-value=6.1e-18  Score=176.20  Aligned_cols=286  Identities=11%  Similarity=0.100  Sum_probs=157.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCC-cEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCccccccccccccc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~-~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (486)
                      ..+||+|||+|++||++|..|+++|+ +|+|+|+++++||++.+....+                               
T Consensus         3 ~~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~gg~~~~~~~~~-------------------------------   51 (472)
T 1b37_A            3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAG-------------------------------   51 (472)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCEEEETT-------------------------------
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCCCceeecccCC-------------------------------
Confidence            46899999999999999999999999 8999999999999999975432                               


Q ss_pred             cccCCCCceEeecCCCEEEec-----ChHHHHHHHh-cCccccc-chhcccceeeeccCCceeecCCCHHHHhhcccCCh
Q 011414          100 LLSQHPRNFNLDVSGPRVLFC-----ADHAVDLMLK-SGASHYL-EFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGL  172 (486)
Q Consensus       100 ~~~~~~~~~~idl~Gp~ll~~-----~~~l~~~l~~-~~~~~y~-ef~~~~~~~~~~~~g~~~~vp~s~~~~f~~~~l~~  172 (486)
                              +.+|+ |++++..     ...+.+++.+ .++..+. .|... ..+++..+|+.+..+.. ...+.      
T Consensus        52 --------~~~d~-g~~~~~~~~~~~~~~~~~~~~~~lgl~~~~~~~~~~-~~~~~~~~g~~~~~~~~-~~~~~------  114 (472)
T 1b37_A           52 --------INVEL-GANWVEGVNGGKMNPIWPIVNSTLKLRNFRSDFDYL-AQNVYKEDGGVYDEDYV-QKRIE------  114 (472)
T ss_dssp             --------EEEES-SCCEEEEESSSSCCTHHHHHHTTSCCCEEECCCTTG-GGCEECSSSSBCCHHHH-HHHHH------
T ss_pred             --------cEEee-CCeEEeccCCCCCCHHHHHHHhhcCCceeeccCccc-cceeEcCCCCCCCHHHH-HHHHH------
Confidence                    34565 4776642     2357778888 7776542 22211 11233335554432110 00110      


Q ss_pred             HhHHHHHHHHHHHHhhcccCccccccccccccccCCcHHH--HHHhcC---CChHHHHHHHHHH-hhccCCchhhhhhhc
Q 011414          173 MEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAE--FLTKMK---LPHKIKSIVLYAI-AMADYDQEVSEYVLK  246 (486)
Q Consensus       173 ~~k~~l~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~l~~~~---l~~~l~~~l~~~i-~~~~~~~~~~~~~~s  246 (486)
                       ....+.+|...+.....           ..++.+.++.+  ++.+..   ....+..++.... .+. +..+.  ...+
T Consensus       115 -~~~~~~~~~~~~~~~~~-----------~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~s  179 (472)
T 1b37_A          115 -LADSVEEMGEKLSATLH-----------ASGRDDMSILAMQRLNEHQPNGPATPVDMVVDYYKFDYE-FAEPP--RVTS  179 (472)
T ss_dssp             -HHHHHHHHHHHHHHTSC-----------TTCTTCCBHHHHHHHHHTSSSSCCSHHHHHHHHHHTHHH-HSSCG--GGBB
T ss_pred             -HHHHHHHHHHHHHHhhc-----------cccchhhhHHHHHHHhhhcccccccHHHHHHHHHHHhhh-hcccc--cccc
Confidence             00112222222211110           01223455443  554322   1111222222111 000 01010  1112


Q ss_pred             hhhHHHHHHHHHHhhhcccCCCcceEeecCCcchHHHHHHHHHHHc--------CcEEEeCCceeEEEEecCCCeEEEEE
Q 011414          247 TRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVK--------GCLYVLRMPVISLLTDQNSGSYKGVR  318 (486)
Q Consensus       247 ~~~~l~~~~~~~~s~g~~g~~~g~~~~p~gG~~~L~qal~r~~~~~--------Gg~i~l~~~V~~I~~~~~~g~~~gV~  318 (486)
                      ....+. ...|    ..++.. ..+.++.||++.|+++|++.+...        |++|+++++|++|..+  ++++ .|+
T Consensus       180 ~~~~~~-~~~~----~~~~~~-~~~~~~~gG~~~l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~~--~~~v-~v~  250 (472)
T 1b37_A          180 LQNTVP-LATF----SDFGDD-VYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYS--PGGV-TVK  250 (472)
T ss_dssp             STTTSS-CHHH----HHHCSE-EEEECCTTCTTHHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEEEEC--SSCE-EEE
T ss_pred             hhhccc-cccc----cccCCc-eeeeecCCcHHHHHHHHHHhccccccccccccccEEEcCCEEEEEEEc--CCcE-EEE
Confidence            211110 0011    112211 113345899999999998766543        7899999999999886  4554 588


Q ss_pred             eCCCcEEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhhccCCCcceEEEEEEEecCCCCC
Q 011414          319 LASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP  378 (486)
Q Consensus       319 ~~~G~~i~A~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~~~  378 (486)
                      +.+|++++||+||++ |...+..++..+.|+||+.+....+...++.+.+..+.+++|+-+
T Consensus       251 ~~~g~~~~ad~vI~a~~~~~l~~~~~~~~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~w~  311 (472)
T 1b37_A          251 TEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFDMAVYTKIFLKFPRKFWP  311 (472)
T ss_dssp             ETTSCEEEESEEEECSCHHHHHTTSSEEESCCCHHHHHHHHHSEEECEEEEEEECSSCCSC
T ss_pred             ECCCCEEEcCEEEEecCHHHhccCCeeECCCCCHHHHHHHHhcCCcceeEEEEECCCcCCC
Confidence            889999999999965 433323332335667776544433444466677888888988644

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.78  E-value=9.6e-18  Score=172.37  Aligned_cols=287  Identities=15%  Similarity=0.104  Sum_probs=158.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCcccccccccccccccc
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS  102 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (486)
                      +||||||||++||+||..|+++|++|+|||+++++||++.+.+..-.                                 
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~ci---------------------------------   48 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYSRESRNV---------------------------------   48 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEEECSSS---------------------------------
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCccCeecceeccCC---------------------------------
Confidence            79999999999999999999999999999999999999998654310                                 


Q ss_pred             CCCCceEeecCCCEEEec--ChHHHHHHHhcCcccccchhcccceeee-ccCCceeec-CCCHHHHhhcccCChHhHHHH
Q 011414          103 QHPRNFNLDVSGPRVLFC--ADHAVDLMLKSGASHYLEFKSIDATFML-DADAKLCSV-PDSRAAIFKDKSLGLMEKNQL  178 (486)
Q Consensus       103 ~~~~~~~idl~Gp~ll~~--~~~l~~~l~~~~~~~y~ef~~~~~~~~~-~~~g~~~~v-p~s~~~~f~~~~l~~~~k~~l  178 (486)
                         ..+.+++ |++++..  ...+.+++.+.|+........  ....+ ..+++.... |... +...      .-+..+
T Consensus        49 ---pg~~~~~-g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~------~~~~~~  115 (431)
T 3k7m_X           49 ---PGLRVEI-GGAYLHRKHHPRLAAELDRYGIPTAAASEF--TSFRHRLGPTAVDQAFPIPG-SEAV------AVEAAT  115 (431)
T ss_dssp             ---TTCEEES-SCCCBCTTTCHHHHHHHHHHTCCEEECCCC--CEECCBSCTTCCSSSSCCCG-GGHH------HHHHHH
T ss_pred             ---CCceEec-CCeeeCCCCcHHHHHHHHHhCCeeeecCCC--CcEEEEecCCeecCCCCCCH-HHHH------HHHHHH
Confidence               1223444 3554433  335566666666643221111  11111 112222111 1111 1000      111223


Q ss_pred             HHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChHHHHHHHHHHh-hccCCchhhhhhhchhhHHHHHHHH
Q 011414          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIA-MADYDQEVSEYVLKTRDGINRLALY  257 (486)
Q Consensus       179 ~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~l~~~i~-~~~~~~~~~~~~~s~~~~l~~~~~~  257 (486)
                      .+++..........+..   .....+. +.++.+|+++.+.++..+.++...+. ......    .+++....+..+...
T Consensus       116 ~~l~~~~~~~~~~~~~~---~~~~~~~-d~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~  187 (431)
T 3k7m_X          116 YTLLRDAHRIDLEKGLE---NQDLEDL-DIPLNEYVDKLDLPPVSRQFLLAWAWNMLGQPA----DQASALWMLQLVAAH  187 (431)
T ss_dssp             HHHHHHHTTCCTTTCTT---SSSCGGG-CSBHHHHHHHHTCCHHHHHHHHHHHHHHHSSCT----TTSBHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCCCCcc---Ccchhhh-cCCHHHHHHhcCCCHHHHHHHHHHHHHhcCCCh----hhhhHHHHHHHHHhc
Confidence            33433333221111100   0111223 38999999998888877665432111 111111    123444333222111


Q ss_pred             HHhhh--cccCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC-C
Q 011414          258 NSSIG--RFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-P  334 (486)
Q Consensus       258 ~~s~g--~~g~~~g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~-p  334 (486)
                      -..+.  ...   ... ++.+|++.+++++.   +..| +|+++++|++|..+  ++. +.|++.+|++++||+||+. |
T Consensus       188 ~~~~~~~~~~---~~~-~~~~g~~~l~~~~~---~~~g-~i~~~~~V~~i~~~--~~~-v~v~~~~g~~~~ad~vi~a~~  256 (431)
T 3k7m_X          188 HYSILGVVLS---LDE-VFSNGSADLVDAMS---QEIP-EIRLQTVVTGIDQS--GDV-VNVTVKDGHAFQAHSVIVATP  256 (431)
T ss_dssp             TSCHHHHHHT---CCE-EETTCTHHHHHHHH---TTCS-CEESSCCEEEEECS--SSS-EEEEETTSCCEEEEEEEECSC
T ss_pred             CCccceeecc---hhh-hcCCcHHHHHHHHH---hhCC-ceEeCCEEEEEEEc--CCe-EEEEECCCCEEEeCEEEEecC
Confidence            00000  011   113 78999999988664   4567 99999999999875  444 4588889988999999964 4


Q ss_pred             CCCCCCCCcccchhhhhhhhhhccCCCcceEEEEEEEecCCC
Q 011414          335 SFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL  376 (486)
Q Consensus       335 ~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~  376 (486)
                      ...+..+  .+.|+++..+....+....+...+...-++.++
T Consensus       257 ~~~l~~i--~~~p~l~~~~~~~~~~~~~~~~~kv~~~~~~~~  296 (431)
T 3k7m_X          257 MNTWRRI--VFTPALPERRRSVIEEGHGGQGLKILIHVRGAE  296 (431)
T ss_dssp             GGGGGGS--EEESCCCHHHHHHHHHCCCCCEEEEEEEEESCC
T ss_pred             cchHhhe--eeCCCCCHHHHHHHHhCCCcceEEEEEEECCCC
Confidence            3333332  255666664444333444556677777788876

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=99.75  E-value=1.1e-17  Score=175.42  Aligned_cols=283  Identities=12%  Similarity=0.091  Sum_probs=157.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCcccccccccccccc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (486)
                      ..+||||||||++||+||..|+++|++|+|||+++++||++.++....                                
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~~~~~~~~--------------------------------   79 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEE--------------------------------   79 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEETT--------------------------------
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCceeeeccCC--------------------------------
Confidence            467999999999999999999999999999999999999998865211                                


Q ss_pred             ccCCCCceEeecCCCEEEecC-hHHHHHHHhcCcccccchhccc-ceeeeccCCceeecCC---CHHHHhhcccCChHhH
Q 011414          101 LSQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSID-ATFMLDADAKLCSVPD---SRAAIFKDKSLGLMEK  175 (486)
Q Consensus       101 ~~~~~~~~~idl~Gp~ll~~~-~~l~~~l~~~~~~~y~ef~~~~-~~~~~~~~g~~~~vp~---s~~~~f~~~~l~~~~k  175 (486)
                           ..+.+|+ |++.+... ..+.+++.+.|+... .|...+ ..+++. +|.....+.   .. ..+. ..+.+.++
T Consensus        80 -----~~~~~~~-g~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~-~g~~~~~~~~~~~~-~~~~-~~~~~~~~  149 (498)
T 2iid_A           80 -----AGWYANL-GPMRLPEKHRIVREYIRKFDLRLN-EFSQENDNAWYFI-KNIRKKVGEVKKDP-GLLK-YPVKPSEA  149 (498)
T ss_dssp             -----TTEEEES-SCCCEETTCHHHHHHHHHTTCCEE-EECSCCTTSEEEE-TTEEEEHHHHHHCG-GGGC-CCCCGGGT
T ss_pred             -----CCchhhc-CcccccchHHHHHHHHHHhCCCce-eecccCCccEEEe-CCeeecccccccCc-cccc-cCCCcccc
Confidence                 1233455 45555443 345666777776421 221111 112111 333221110   00 0010 00111110


Q ss_pred             ---------HHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcC-CChHHHHHHHHHHhhc-cCCchhhhhh
Q 011414          176 ---------NQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMK-LPHKIKSIVLYAIAMA-DYDQEVSEYV  244 (486)
Q Consensus       176 ---------~~l~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~-l~~~l~~~l~~~i~~~-~~~~~~~~~~  244 (486)
                               ..+.+++..+....        .......+.+.++.+|+++.+ +++..+.++...+... .+.       
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------  214 (498)
T 2iid_A          150 GKSAGQLYEESLGKVVEELKRTN--------CSYILNKYDTYSTKEYLIKEGDLSPGAVDMIGDLLNEDSGYY-------  214 (498)
T ss_dssp             TCCHHHHHHHHTHHHHHHHHHSC--------HHHHHHHHTTSBHHHHHHHTSCCCHHHHHHHHHHTTCGGGTT-------
T ss_pred             CCCHHHHHHHHHHHHHHHHhhcc--------HHHHHHHhhhhhHHHHHHHccCCCHHHHHHHHHhcCcccchh-------
Confidence                     01112222111110        000012345678999999866 5665554433211100 000       


Q ss_pred             hchhhHHHHHHHHHHhhhcccCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCc-
Q 011414          245 LKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ-  323 (486)
Q Consensus       245 ~s~~~~l~~~~~~~~s~g~~g~~~g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~-  323 (486)
                      .+...++...    ..+. .+   ..+.++.||++.|+++|++.+   +.+|+++++|++|..+  +++ +.|++.+|+ 
T Consensus       215 ~~~~~~~~~~----~~~~-~~---~~~~~~~gG~~~l~~~l~~~l---~~~i~~~~~V~~I~~~--~~~-v~v~~~~~~~  280 (498)
T 2iid_A          215 VSFIESLKHD----DIFA-YE---KRFDEIVDGMDKLPTAMYRDI---QDKVHFNAQVIKIQQN--DQK-VTVVYETLSK  280 (498)
T ss_dssp             SBHHHHHHHH----HHHT-TC---CCEEEETTCTTHHHHHHHHHT---GGGEESSCEEEEEEEC--SSC-EEEEEECSSS
T ss_pred             HHHHHHHHHH----hccc-cC---cceEEeCCcHHHHHHHHHHhc---ccccccCCEEEEEEEC--CCe-EEEEEecCCc
Confidence            0111111111    1111 11   126789999999999987654   3489999999999886  444 467666665 


Q ss_pred             ---EEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhhccCCCcceEEEEEEEecCCC
Q 011414          324 ---DILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL  376 (486)
Q Consensus       324 ---~i~A~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~  376 (486)
                         +++||+||++ |...+..+  .++|+||..+....+...++.+.+.++.+++++
T Consensus       281 ~~~~~~ad~vI~t~p~~~~~~i--~f~p~Lp~~~~~ai~~l~~~~~~kv~l~~~~~~  335 (498)
T 2iid_A          281 ETPSVTADYVIVCTTSRAVRLI--KFNPPLLPKKAHALRSVHYRSGTKIFLTCTTKF  335 (498)
T ss_dssp             CCCEEEESEEEECSCHHHHTTS--EEESCCCHHHHHHHHHCCEECEEEEEEEESSCG
T ss_pred             ccceEEeCEEEECCChHHHhhe--ecCCCCCHHHHHHHHhCCCcceeEEEEEeCCCC
Confidence               4899999975 43333343  256667776554444556677888888889885

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=99.75  E-value=2.7e-17  Score=168.73  Aligned_cols=247  Identities=14%  Similarity=0.151  Sum_probs=137.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCC-CcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCccccccccccccc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G-~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (486)
                      ..+||||||||++||+||.+|+++| ++|+|+|+++++||+++|++.++                               
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG~~~t~~~~G-------------------------------   53 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHSPNYHG-------------------------------   53 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSSTTCCCCEETT-------------------------------
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCCcccccCCCC-------------------------------
Confidence            4689999999999999999999999 99999999999999999976543                               


Q ss_pred             cccCCCCceEeecCCCEEEecC-hHHHHHHHhcCcccccchhcccceeeeccCCceeecCCCHHHHhhcccCChHhHHHH
Q 011414          100 LLSQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (486)
Q Consensus       100 ~~~~~~~~~~idl~Gp~ll~~~-~~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s~~~~f~~~~l~~~~k~~l  178 (486)
                              +.+|. |++++... ..+.+++.+.|+...  .......+.+ .+|+.. .|..  +....    +.....+
T Consensus        54 --------~~~d~-G~~~~~~~~~~~~~l~~~~g~~~~--~~~~~~~~~~-~~g~~~-~~~~--~~~~~----~~~~~~~  114 (424)
T 2b9w_A           54 --------RRYEM-GAIMGVPSYDTIQEIMDRTGDKVD--GPKLRREFLH-EDGEIY-VPEK--DPVRG----PQVMAAV  114 (424)
T ss_dssp             --------EECCS-SCCCBCTTCHHHHHHHHHHCCCCC--SCCCCEEEEC-TTSCEE-CGGG--CTTHH----HHHHHHH
T ss_pred             --------ccccc-CceeecCCcHHHHHHHHHhCCccc--cccccceeEc-CCCCEe-cccc--Ccccc----hhHHHHH
Confidence                    23344 45554333 456777777776421  1111112222 355543 2211  00000    0011122


Q ss_pred             HHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChHHHHHHHHHHhhccCCchhhhhhhchhhHHHHHHHHH
Q 011414          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN  258 (486)
Q Consensus       179 ~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~l~~~i~~~~~~~~~~~~~~s~~~~l~~~~~~~  258 (486)
                      .++...+.......... .......+....|+.+|+++.+.+. +.+.+...+....+. ++  ..+++...+..+... 
T Consensus       115 ~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~l~~~~~~~-~~~~~~~~~~~~~~~-~~--~~~~a~~~~~~~~~~-  188 (424)
T 2b9w_A          115 QKLGQLLATKYQGYDAN-GHYNKVHEDLMLPFDEFLALNGCEA-ARDLWINPFTAFGYG-HF--DNVPAAYVLKYLDFV-  188 (424)
T ss_dssp             HHHHHHHHTTTTTTTSS-SSSSCCCGGGGSBHHHHHHHTTCGG-GHHHHTTTTCCCCCC-CT--TTSBHHHHHHHSCHH-
T ss_pred             HHHHHHHhhhhhhcccc-cchhhhhhhhccCHHHHHHhhCcHH-HHHHHHHHHHhhccC-Ch--HhcCHHHHHHhhhHh-
Confidence            23332222211100000 0000112345689999999887764 333322111111121 11  223444332211110 


Q ss_pred             HhhhcccCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC
Q 011414          259 SSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (486)
Q Consensus       259 ~s~g~~g~~~g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~  333 (486)
                      ......+   +..+++.+|++++++++.   +.++.+++++++|++|..+  ++++ .|++.+|+ ++||+||++
T Consensus       189 ~~~~~~~---~~~~~~~~g~~~l~~~l~---~~l~~~v~~~~~V~~i~~~--~~~v-~v~~~~g~-~~ad~Vv~a  253 (424)
T 2b9w_A          189 TMMSFAK---GDLWTWADGTQAMFEHLN---ATLEHPAERNVDITRITRE--DGKV-HIHTTDWD-RESDVLVLT  253 (424)
T ss_dssp             HHHHHHH---TCCBCCTTCHHHHHHHHH---HHSSSCCBCSCCEEEEECC--TTCE-EEEESSCE-EEESEEEEC
T ss_pred             hhhcccC---CceEEeCChHHHHHHHHH---HhhcceEEcCCEEEEEEEE--CCEE-EEEECCCe-EEcCEEEEC
Confidence            0010011   124578999999999775   4567789999999999876  5554 58877775 899999964

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=99.74  E-value=3e-17  Score=171.57  Aligned_cols=303  Identities=14%  Similarity=0.114  Sum_probs=153.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCccccccccccccc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (486)
                      +..+||+|||||++||+||..|+++|++|+|||+++++||++.+.....  .+....+.                    .
T Consensus         9 ~~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~~--~~~~~~~~--------------------~   66 (489)
T 2jae_A            9 KGSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRVWTARGGS--EETDLSGE--------------------T   66 (489)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTCCEEETTC--EEECTTSC--------------------E
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCCceeeeccCc--ccccccch--------------------h
Confidence            3468999999999999999999999999999999999999998876431  01111100                    0


Q ss_pred             cccCCCCceEeecCCCEEEecChHHHHHHHhcCcccccchhccc-ceeee-ccC----CceeecCCCHHHHhhcccCChH
Q 011414          100 LLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSID-ATFML-DAD----AKLCSVPDSRAAIFKDKSLGLM  173 (486)
Q Consensus       100 ~~~~~~~~~~idl~Gp~ll~~~~~l~~~l~~~~~~~y~ef~~~~-~~~~~-~~~----g~~~~vp~s~~~~f~~~~l~~~  173 (486)
                      ........+.++. |+..+.....+.+++.+.|+... .+.... ..+++ ..+    |+...+|....+.+        
T Consensus        67 ~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--------  136 (489)
T 2jae_A           67 QKCTFSEGHFYNV-GATRIPQSHITLDYCRELGVEIQ-GFGNQNANTFVNYQSDTSLSGQSVTYRAAKADTF--------  136 (489)
T ss_dssp             EECCCCTTCEEES-SCCCEETTSTHHHHHHHHTCCEE-EECCCCTTSEEECCCSSTTTTCCEEHHHHHHHHH--------
T ss_pred             hhhcccCCCcCCc-chhhcccHHHHHHHHHHcCCceE-EccccCCCceEEecCCcccCCccccHHHHhhhhh--------
Confidence            0001113445666 57766555578888888887532 121111 12333 212    44443322111100        


Q ss_pred             hHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChH--------HHHHHHHHHhhccCCchhhhhhh
Q 011414          174 EKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHK--------IKSIVLYAIAMADYDQEVSEYVL  245 (486)
Q Consensus       174 ~k~~l~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~--------l~~~l~~~i~~~~~~~~~~~~~~  245 (486)
                        ..+..++......... .      .......+.++.+|+++++....        +..++...-.........  ...
T Consensus       137 --~~~~~l~~~~~~~~~~-~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  205 (489)
T 2jae_A          137 --GYMSELLKKATDQGAL-D------QVLSREDKDALSEFLSDFGDLSDDGRYLGSSRRGYDSEPGAGLNFGTEK--KPF  205 (489)
T ss_dssp             --HHHHHHHHHHHHHTTT-T------TTSCHHHHHHHHHHHHHHTTCCTTSCCCCCGGGCEEECCCBTTCCCEEC--CCC
T ss_pred             --ccHHHHHHHHHhcccc-c------cccchhhHHHHHHHHHHhhhhhhccccccccchhhccCCCcccccCCCC--CCc
Confidence              0111111111110000 0      00001123467777775321100        000000000000000000  000


Q ss_pred             chhhHHH-HHHHHHHhhhcccCCCcceEeecCCcchHHHHHHHHHHHcC-cEEEeCCceeEEEEecCCCeEEEEEeCCC-
Q 011414          246 KTRDGIN-RLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRLASG-  322 (486)
Q Consensus       246 s~~~~l~-~~~~~~~s~g~~g~~~g~~~~p~gG~~~L~qal~r~~~~~G-g~i~l~~~V~~I~~~~~~g~~~gV~~~~G-  322 (486)
                      ....... .+..++........ ...+.+++||++.|+++|++.+   + ++|++|++|++|..+  ++++ .|++.+| 
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~gG~~~l~~~l~~~l---~~~~i~~~~~V~~i~~~--~~~v-~v~~~~g~  278 (489)
T 2jae_A          206 AMQEVIRSGIGRNFSFDFGYDQ-AMMMFTPVGGMDRIYYAFQDRI---GTDNIVFGAEVTSMKNV--SEGV-TVEYTAGG  278 (489)
T ss_dssp             CHHHHHHHTTTTTGGGGGCTTT-SSSEEEETTCTTHHHHHHHHHH---CGGGEETTCEEEEEEEE--TTEE-EEEEEETT
T ss_pred             CHHHHhhhhHHHHHhhhhcccc-CccEEeecCCHHHHHHHHHHhc---CCCeEEECCEEEEEEEc--CCeE-EEEEecCC
Confidence            0000000 00011111000111 1237789999999999887644   4 789999999999887  5554 4766676 


Q ss_pred             --cEEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhhccCCCcceEEEEEEEecCCC
Q 011414          323 --QDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL  376 (486)
Q Consensus       323 --~~i~A~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~  376 (486)
                        ++++||+||++ |...+..+.  +  ++|..+....+...+..+.+..+.+++++
T Consensus       279 ~~~~~~ad~vI~a~p~~~l~~l~--~--~l~~~~~~~l~~~~~~~~~kv~l~~~~~~  331 (489)
T 2jae_A          279 SKKSITADYAICTIPPHLVGRLQ--N--NLPGDVLTALKAAKPSSSGKLGIEYSRRW  331 (489)
T ss_dssp             EEEEEEESEEEECSCHHHHTTSE--E--CCCHHHHHHHHTEECCCEEEEEEEESSCH
T ss_pred             eEEEEECCEEEECCCHHHHHhCc--c--CCCHHHHHHHHhCCCccceEEEEEeCCCC
Confidence              67999999975 444334442  1  34433333223344667788888888874

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=99.64  E-value=4.7e-15  Score=149.81  Aligned_cols=311  Identities=13%  Similarity=0.130  Sum_probs=166.2

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccc-hhhhhhhhhcCCCCCCCCCCCccccccccccc
Q 011414           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS-IADLTHFLNSHSTPSSVCPDPLYSDVEISNYA   97 (486)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (486)
                      +...+||+|||||++||++|..|+++|++|+|+|+++++||++.+.. .++                             
T Consensus        26 ~~~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~~G-----------------------------   76 (397)
T 3hdq_A           26 ESKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAYDCYDDAG-----------------------------   76 (397)
T ss_dssp             CCCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGCCEECTTS-----------------------------
T ss_pred             cCCCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCCCccceeeccCC-----------------------------
Confidence            44679999999999999999999999999999999999999999864 222                             


Q ss_pred             cccccCCCCceEe-ecCCCEEEecC-hHHHHHHHhcCcccccchhcccceeeeccCCceeecCCCHHHHh--hcccCChH
Q 011414           98 SRLLSQHPRNFNL-DVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIF--KDKSLGLM  173 (486)
Q Consensus        98 ~~~~~~~~~~~~i-dl~Gp~ll~~~-~~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s~~~~f--~~~~l~~~  173 (486)
                                +.+ +. |++++... ..+.+++.+.+...  .+.  ...+++. +|+++++|.+...+.  ....+++.
T Consensus        77 ----------~~~~~~-G~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~-~g~l~~lP~~~~~~~~l~~~~~~~~  140 (397)
T 3hdq_A           77 ----------VLIHPY-GPHIFHTNSKDVFEYLSRFTEWR--PYQ--HRVLASV-DGQLLPIPINLDTVNRLYGLNLTSF  140 (397)
T ss_dssp             ----------CEECTT-SCCCCEESCHHHHHHHHTSCCEE--ECC--CBEEEEE-TTEEEEESCCHHHHHHHHTCCCCHH
T ss_pred             ----------ceEeec-CCcccCCChHHHHHHHHHhhhcc--ccc--ccceEEE-CCEEEEcCCChHHHHHhhccCCCHH
Confidence                      222 33 56666543 35677777766321  111  1223443 899999998754321  11223332


Q ss_pred             hHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChHHHH-HHH-HHHhhccCCchhhhhhhchhhHH
Q 011414          174 EKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS-IVL-YAIAMADYDQEVSEYVLKTRDGI  251 (486)
Q Consensus       174 ~k~~l~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~-~l~-~~i~~~~~~~~~~~~~~s~~~~l  251 (486)
                         .+..++.. ..              .....+.++.+|+.+. +.+.+.+ ++. +.-..  +..++  +++|+... 
T Consensus       141 ---~~~~~l~~-~~--------------~~~~~~~s~~e~~~~~-~G~~~~e~~~~py~~k~--~~~~~--~~Lsa~~~-  196 (397)
T 3hdq_A          141 ---QVEEFFAS-VA--------------EKVEQVRTSEDVVVSK-VGRDLYNKFFRGYTRKQ--WGLDP--SELDASVT-  196 (397)
T ss_dssp             ---HHHHHHHH-HC--------------CCCSSCCBHHHHHHHH-HHHHHHHHHTHHHHHHH--HSSCG--GGSBTTTG-
T ss_pred             ---HHHHHHhh-cc--------------cCCCCCcCHHHHHHHh-cCHHHHHHHHHHHhCch--hCCCH--HHHHHHHH-
Confidence               22233321 11              1123467999999752 2223333 222 11122  22222  23555321 


Q ss_pred             HHHHHHHHhhhcccCCCcce-EeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEE
Q 011414          252 NRLALYNSSIGRFQNALGAL-IYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKL  330 (486)
Q Consensus       252 ~~~~~~~~s~g~~g~~~g~~-~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~V  330 (486)
                      .++......-.++.+  +.+ .+|++|.+.|.++|.   +..|++|+||++|.++                +.++.+|+|
T Consensus       197 ~Rvp~~~~~d~~yf~--~~~qg~P~gGy~~l~e~l~---~~~g~~V~l~~~v~~~----------------~~~~~~d~v  255 (397)
T 3hdq_A          197 ARVPTRTNRDNRYFA--DTYQAMPLHGYTRMFQNML---SSPNIKVMLNTDYREI----------------ADFIPFQHM  255 (397)
T ss_dssp             GGSCCCSSCCCBSCC--CSEEEEETTCHHHHHHHHT---CSTTEEEEESCCGGGT----------------TTTSCEEEE
T ss_pred             HhcCcccccCccchh--hhheeccCCCHHHHHHHHH---hccCCEEEECCeEEec----------------cccccCCEE
Confidence            111100000001111  224 479999999998764   4679999999999832                223458899


Q ss_pred             EECCCCCCCCCCcccchhhhhhhhhhccCCCcceEEEEEEEecCCCCCCCCceEEEeCCCCCCCCCCceEEEEEeCCCCc
Q 011414          331 VLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLA  410 (486)
Q Consensus       331 I~~p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~v~~~~~~~~  410 (486)
                      |++.+.  ..+   ++..    .    .......+......++.+..+  ....+.+|... +     .-.+.++.+-++
T Consensus       256 I~T~P~--d~~---~~~~----~----g~L~yrsl~~~~~~~~~~~~~--~~~~vn~~d~~-p-----~tRi~e~k~~~~  314 (397)
T 3hdq_A          256 IYTGPV--DAF---FDFC----Y----GKLPYRSLEFRHETHDTEQLL--PTGTVNYPNDY-A-----YTRVSEFKHITG  314 (397)
T ss_dssp             EECSCH--HHH---TTTT----T----CCCCEEEEEEEEEEESSSCSC--SSSEEECSSSS-S-----CSEEEEHHHHHC
T ss_pred             EEcCCH--HHH---HHHh----c----CCCCCceEEEEEEEeccccCC--CCeEEEeCCCC-c-----ceEEEeecccCC
Confidence            964221  111   1100    0    011222232222334544222  35678887432 2     235666655433


Q ss_pred             cCCCCeEEEEEEEeecc--------CcchHHHHHHHHHH
Q 011414          411 VCPLGMFVLYFSALCDE--------VNQGKKLLHAALSA  441 (486)
Q Consensus       411 ~~P~G~~vi~~~t~~~~--------~~~~~~~l~~~~~~  441 (486)
                      . |.++++|..-..+..        ..+..+.++.+.+.
T Consensus       315 ~-~~~~t~i~~Ey~~~~~~pyYpv~~~~~~~~~~~y~~~  352 (397)
T 3hdq_A          315 Q-RHHQTSVVYEYPRAEGDPYYPVPRPENAELYKKYEAL  352 (397)
T ss_dssp             C-CCSSEEEEEEEEESSSSCCEECCSHHHHHHHHHHHHH
T ss_pred             C-CCCCEEEEEEECCCCCccccccCchhHHHHHHHHHHH
Confidence            2 456777765544421        12345666666555

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=99.64  E-value=8.9e-17  Score=163.69  Aligned_cols=300  Identities=12%  Similarity=0.080  Sum_probs=157.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhC-CCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCccccccccccccc
Q 011414           21 TAFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~-G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (486)
                      .++||||||||++||+||..|+++ |++|+|+|+++++||++.+...+.                               
T Consensus         6 ~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG~~~~~~~~~-------------------------------   54 (399)
T 1v0j_A            6 ARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYSEAEPQ-------------------------------   54 (399)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGGGCEEECTT-------------------------------
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeeccccC-------------------------------
Confidence            479999999999999999999999 999999999999999999976420                               


Q ss_pred             cccCCCCceEeecCCCEEEec-ChHHHHHHHhcCcccccchhcccceeeeccCCceeecCCCHHH---HhhcccCChHhH
Q 011414          100 LLSQHPRNFNLDVSGPRVLFC-ADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAA---IFKDKSLGLMEK  175 (486)
Q Consensus       100 ~~~~~~~~~~idl~Gp~ll~~-~~~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s~~~---~f~~~~l~~~~k  175 (486)
                            .++.+|..|++++.. ...+.+++.+.++.  ..+.  ...+++ .+|+.+++|.+...   ++.. .+.+.+ 
T Consensus        55 ------~g~~~~~~G~~~~~~~~~~~~~~~~~~g~~--~~~~--~~~~~~-~~G~~~~~p~~~~~~~~l~~~-~~~~~~-  121 (399)
T 1v0j_A           55 ------TGIEVHKYGAHLFHTSNKRVWDYVRQFTDF--TDYR--HRVFAM-HNGQAYQFPMGLGLVSQFFGK-YFTPEQ-  121 (399)
T ss_dssp             ------TCCEEETTSCCCEEESCHHHHHHHTTTCCB--CCCC--CCEEEE-ETTEEEEESSSHHHHHHHHTS-CCCHHH-
T ss_pred             ------CCEEEEeCCCcEEcCCcHHHHHHHHHhhhh--hccc--cceEEE-ECCEEEeCCCCHHHHHHHhcc-cCCHHH-
Confidence                  123343125666644 34677777777752  1221  122333 37899988876422   2221 112222 


Q ss_pred             HHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChH-HHHHHH-HHHhhccCCchhhhhhhchhhHHHH
Q 011414          176 NQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHK-IKSIVL-YAIAMADYDQEVSEYVLKTRDGINR  253 (486)
Q Consensus       176 ~~l~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~-l~~~l~-~~i~~~~~~~~~~~~~~s~~~~l~~  253 (486)
                        +.+++......             .....+.++.+|+.+. +.+. .+.++. +.......  ++  .++++... .+
T Consensus       122 --~~~~l~~~~~~-------------~~~~~~~s~~e~l~~~-~g~~~~~~~~~~~~~~~~~~--~~--~~ls~~~~-~~  180 (399)
T 1v0j_A          122 --ARQLIAEQAAE-------------IDTADAQNLEEKAISL-IGRPLYEAFVKGYTAKQWQT--DP--KELPAANI-TR  180 (399)
T ss_dssp             --HHHHHHHHGGG-------------SCTTC----CCHHHHH-HCHHHHHHHTHHHHHHHHTS--CG--GGSCGGGC-SC
T ss_pred             --HHHHHHHHhhc-------------cCCCCcccHHHHHHHH-HhHHHHHHHHHHHHHhhcCC--Ch--hhcChHhh-hc
Confidence              22222221110             0112356788888863 3333 333332 11122111  21  22444322 00


Q ss_pred             HHHHHHhhhcccCCCcceE-eecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEE-EcCEEE
Q 011414          254 LALYNSSIGRFQNALGALI-YPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDI-LSHKLV  331 (486)
Q Consensus       254 ~~~~~~s~g~~g~~~g~~~-~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i-~A~~VI  331 (486)
                      +.........+..  ..+. +|+||+++|+++|++   .+|++|+||++|++|..   .     |     +++ .||+||
T Consensus       181 ~~~~~~~~~~~~~--~~~~~~p~gG~~~l~~~l~~---~~g~~I~l~~~V~~I~~---~-----v-----~~~~~aD~VI  242 (399)
T 1v0j_A          181 LPVRYTFDNRYFS--DTYEGLPTDGYTAWLQNMAA---DHRIEVRLNTDWFDVRG---Q-----L-----RPGSPAAPVV  242 (399)
T ss_dssp             CCCCSSSCCCSCC--CSEEECBTTHHHHHHHHHTC---STTEEEECSCCHHHHHH---H-----H-----TTTSTTCCEE
T ss_pred             ceeEeccccchhh--hhhcccccccHHHHHHHHHh---cCCeEEEECCchhhhhh---h-----h-----hhcccCCEEE
Confidence            0000000001111  1253 999999999998764   67899999999999842   1     2     135 699999


Q ss_pred             EC-CCCCCCCCCcccchhhhhhhhhhccCCCcceEEEEEEEecCCCCCCCCceEEEeCCCCCCCCCCceEEEEEeCCC-C
Q 011414          332 LD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGN-L  409 (486)
Q Consensus       332 ~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~v~~~~~~-~  409 (486)
                      ++ |...+.++.             + ....+..+....+..+.+..+  ....+.+|.....   .  ..+..+..- .
T Consensus       243 ~t~p~~~l~~~~-------------l-~~l~y~s~~~~~~~~~~~~~~--~~~~~~~~~~~~~---~--~ri~~~~~~~~  301 (399)
T 1v0j_A          243 YTGPLDRYFDYA-------------E-GRLGWRTLDFEVEVLPIGDFQ--GTAVMNYNDLDVP---Y--TRIHEFRHFHP  301 (399)
T ss_dssp             ECSCHHHHTTTT-------------T-CCCCEEEEEEEEEEESSSCSS--SSSEEEECCTTSS---C--SEEEEGGGGCT
T ss_pred             ECCcHHHHHhhh-------------h-CCCCcceEEEEEEEEccccCC--CCeEEEeCCCCCC---c--ceeEeecCCCC
Confidence            75 322212221             0 111222223333345655322  2346777743221   1  234445443 3


Q ss_pred             ccC-CCCeEEEEEEEe
Q 011414          410 AVC-PLGMFVLYFSAL  424 (486)
Q Consensus       410 ~~~-P~G~~vi~~~t~  424 (486)
                      ... |+++.+|++...
T Consensus       302 ~~~~~~~~~~v~~e~~  317 (399)
T 1v0j_A          302 ERDYPTDKTVIMREYS  317 (399)
T ss_dssp             TSCCCSSCEEEEEEEE
T ss_pred             CCcCCCCCeEEEEeec
Confidence            454 667778777653

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=99.63  E-value=9.2e-15  Score=146.53  Aligned_cols=47  Identities=17%  Similarity=0.340  Sum_probs=43.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccC-CCCCCCccccch
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN-PFYGSHFSSLSI   66 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~-~~~GG~~~s~~~   66 (486)
                      +..+||+|||||++||+||+.|+++|++|+|||++ +++||++.++..
T Consensus        42 ~~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vGGr~~t~~~   89 (376)
T 2e1m_A           42 GPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTFHA   89 (376)
T ss_dssp             CSCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCBTTCCEECC
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccCCceeeecc
Confidence            45689999999999999999999999999999999 999999998763

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=99.61  E-value=5.7e-16  Score=155.89  Aligned_cols=226  Identities=13%  Similarity=0.168  Sum_probs=128.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCccccccccccccccc
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL  101 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (486)
                      ++||+|||+|++||++|.+|+++|++|+|+|+++++||++.++..++                                 
T Consensus         1 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g---------------------------------   47 (367)
T 1i8t_A            1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEG---------------------------------   47 (367)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCEEEETT---------------------------------
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcceEeeccCC---------------------------------
Confidence            37999999999999999999999999999999999999999875322                                 


Q ss_pred             cCCCCceEeecCCCEEEecCh-HHHHHHHhcCcccccchhcccceeeeccCCceeecCCCHHHHhhcccCChHhHHHHHH
Q 011414          102 SQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMR  180 (486)
Q Consensus       102 ~~~~~~~~idl~Gp~ll~~~~-~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s~~~~f~~~~l~~~~k~~l~~  180 (486)
                            +.+|..||+++.... .+.+++.+.+..  ..+...  .+.+ .+|+.+.+|.+...+...  +.......+.+
T Consensus        48 ------~~~~~~G~~~~~~~~~~~~~~~~~l~~~--~~~~~~--~~~~-~~g~~~~~p~~~~~~~~l--~~~~~~~~~~~  114 (367)
T 1i8t_A           48 ------IQIHKYGAHIFHTNDKYIWDYVNDLVEF--NRFTNS--PLAI-YKDKLFNLPFNMNTFHQM--WGVKDPQEAQN  114 (367)
T ss_dssp             ------EEEETTSCCCEEESCHHHHHHHHTTSCB--CCCCCC--CEEE-ETTEEEESSBSHHHHHHH--HCCCCHHHHHH
T ss_pred             ------ceeeccCCceecCCCHHHHHHHHHhhhh--hhcccc--ceEE-ECCeEEEcCCCHHHHHHH--hccCCHHHHHH
Confidence                  334312577665443 556666655531  122211  1222 378888888765332211  11011223344


Q ss_pred             HHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChHHHH-HHH-HHHhhccCCchhhhhhhchhhHHHHHHHHH
Q 011414          181 FFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS-IVL-YAIAMADYDQEVSEYVLKTRDGINRLALYN  258 (486)
Q Consensus       181 fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~-~l~-~~i~~~~~~~~~~~~~~s~~~~l~~~~~~~  258 (486)
                      |+......             .....+.++.+|+.+. +.+.+.+ ++. +.......  ++  .++++... .++....
T Consensus       115 ~l~~~~~~-------------~~~~~~~s~~~~~~~~-~g~~~~~~~~~p~~~~~~~~--~~--~~lsa~~~-~~l~~~~  175 (367)
T 1i8t_A          115 IINAQKKK-------------YGDKVPENLEEQAISL-VGEDLYQALIKGYTEKQWGR--SA--KELPAFII-KRIPVRF  175 (367)
T ss_dssp             HHHHHTTT-------------TCCCCCCSHHHHHHHH-HHHHHHHHHTHHHHHHHHSS--CG--GGSCTTSS-CCCCBCS
T ss_pred             HHHHHhhc-------------cCCCCCccHHHHHHHH-HhHHHHHHHHHHHHhhhhCC--Ch--HHcCHHHH-hhceeee
Confidence            44432221             0112457899999865 3333333 222 11122222  22  22444321 0000000


Q ss_pred             HhhhcccCCCcceE-eecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC
Q 011414          259 SSIGRFQNALGALI-YPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (486)
Q Consensus       259 ~s~g~~g~~~g~~~-~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~  333 (486)
                      ..-..+.  .+.+. +|+||+++|+++|++     |++|+||++|++|.    . +   |      .+.+|+||++
T Consensus       176 ~~~~~~~--~~~~~~~p~gG~~~l~~~l~~-----g~~i~l~~~V~~i~----~-~---v------~~~~D~VV~a  230 (367)
T 1i8t_A          176 TFDNNYF--SDRYQGIPVGGYTKLIEKMLE-----GVDVKLGIDFLKDK----D-S---L------ASKAHRIIYT  230 (367)
T ss_dssp             SSCCCSC--CCSEEECBTTCHHHHHHHHHT-----TSEEECSCCGGGSH----H-H---H------HTTEEEEEEC
T ss_pred             ccccccc--cchhhcccCCCHHHHHHHHhc-----CCEEEeCCceeeec----h-h---h------hccCCEEEEe
Confidence            0000111  12353 999999999998865     68999999999873    1 1   2      2458999964

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=99.58  E-value=5.5e-14  Score=153.65  Aligned_cols=99  Identities=13%  Similarity=0.050  Sum_probs=71.8

Q ss_pred             eEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC-CCCCCCCCCcccchhh
Q 011414          271 LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSLASSHQQL  349 (486)
Q Consensus       271 ~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~-p~~~~~~l~~~~~~~l  349 (486)
                      .....+|++.|.+++++     |.+|+++++|++|..+  ++. +.|++.+|++++||+||+. |...+......+.|+|
T Consensus       526 ~~~~~~G~~~l~~aLa~-----gl~I~l~t~V~~I~~~--~~~-v~V~~~~G~~i~Ad~VIvA~P~~vL~~~~i~f~P~L  597 (776)
T 4gut_A          526 HTLLTPGYSVIIEKLAE-----GLDIQLKSPVQCIDYS--GDE-VQVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPL  597 (776)
T ss_dssp             EEECTTCTHHHHHHHHT-----TSCEESSCCEEEEECS--SSS-EEEEETTCCEEEESEEEECCCHHHHHTTCSEEESCC
T ss_pred             eEEECChHHHHHHHHHh-----CCcEEcCCeeEEEEEc--CCE-EEEEECCCcEEEcCEEEECCCHHHHhhcccccCCCC
Confidence            55678999999987753     6789999999999876  444 4688889999999999965 4433222112467777


Q ss_pred             hhhhhhhccCCCcceEEEEEEEecCCCC
Q 011414          350 QESFQAFSLSDNKGKVARGICITRSSLK  377 (486)
Q Consensus       350 ~~~~~~l~~~~~~~~v~r~i~i~~~~~~  377 (486)
                      |..+....+....+.+.+.++.+++++-
T Consensus       598 p~~~~~ai~~l~~g~~~KV~l~f~~~FW  625 (776)
T 4gut_A          598 SEKKMKAINSLGAGIIEKIALQFPYRFW  625 (776)
T ss_dssp             CHHHHHHHHHEEEECCEEEEEECSSCTT
T ss_pred             CHHHHHHHHhCCCeeEEEEEEecCcccc
Confidence            7765554444556778888888999863

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=99.57  E-value=2.4e-15  Score=152.24  Aligned_cols=214  Identities=13%  Similarity=0.145  Sum_probs=123.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCcccccccccccccc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (486)
                      +++||+|||+|++||++|..|+++|++|+|+|+++++||++.+...+.                                
T Consensus         2 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~~~~--------------------------------   49 (384)
T 2bi7_A            2 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSE--------------------------------   49 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCEEECTT--------------------------------
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcCCccccccccC--------------------------------
Confidence            458999999999999999999999999999999999999999875421                                


Q ss_pred             ccCCCCceEe-ecCCCEEEecC-hHHHHHHHhcCcccccchhcccceeeeccCCceeecCCCHHHHhhc--ccCChHhHH
Q 011414          101 LSQHPRNFNL-DVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKD--KSLGLMEKN  176 (486)
Q Consensus       101 ~~~~~~~~~i-dl~Gp~ll~~~-~~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s~~~~f~~--~~l~~~~k~  176 (486)
                           .++.+ |. |++++... ..+.+++.+.+...  .+.  ...+++ .+|+.+.+|.+...+...  ..+++.   
T Consensus        50 -----~g~~~~~~-G~~~~~~~~~~~~~~~~~l~~~~--~~~--~~~~~~-~~g~~~~~P~~~~~~~~l~~~~~~~~---  115 (384)
T 2bi7_A           50 -----TNVMVHVY-GPHIFHTDNETVWNYVNKHAEMM--PYV--NRVKAT-VNGQVFSLPINLHTINQFFSKTCSPD---  115 (384)
T ss_dssp             -----TCCEEETT-SCCCEEESCHHHHHHHHTTSCEE--ECC--CCEEEE-ETTEEEEESCCHHHHHHHTTCCCCHH---
T ss_pred             -----CCceEeeC-CceEECCCCHHHHHHHHHHhhhc--ccc--cceEEE-ECCEEEECCCChhHHHHHhcccCCHH---
Confidence                 12333 33 57766543 36677777766421  121  112233 378888888875322111  111222   


Q ss_pred             HHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChHHHH-HHH-HHHhhccCCchhhhhhhchhhHHHHH
Q 011414          177 QLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS-IVL-YAIAMADYDQEVSEYVLKTRDGINRL  254 (486)
Q Consensus       177 ~l~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~-~l~-~~i~~~~~~~~~~~~~~s~~~~l~~~  254 (486)
                      .+.+++......             . ...+.++.+|+.+. +.+.+.+ ++. +......  .++  .++++... .++
T Consensus       116 ~~~~~l~~~~~~-------------~-~~~~~sl~e~~~~~-~g~~~~~~~~~p~~~~~~~--~~~--~~ls~~~~-~r~  175 (384)
T 2bi7_A          116 EARALIAEKGDS-------------T-IADPQTFEEEALRF-IGKELYEAFFKGYTIKQWG--MQP--SELPASIL-KRL  175 (384)
T ss_dssp             HHHHHHHHHSCC-------------S-CSSCCBHHHHHHHH-HCHHHHHHHTHHHHHHHHS--SCG--GGSBGGGC-CSC
T ss_pred             HHHHHHHHhhhc-------------c-CCCCcCHHHHHHHh-hcHHHHHHHHHHHHHHHhC--CCH--HHhCHHHH-hcc
Confidence            223333322110             0 12467899999865 3444433 322 2212222  222  22443321 000


Q ss_pred             HHHHHhhhcccCCCcceE-eecCCcchHHHHHHHHHHHcCcEEEeCCcee-EE
Q 011414          255 ALYNSSIGRFQNALGALI-YPIYGQGELPQAFCRRAAVKGCLYVLRMPVI-SL  305 (486)
Q Consensus       255 ~~~~~s~g~~g~~~g~~~-~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~-~I  305 (486)
                      .........+..  +.+. +|+||+++|+++|++   ..|++|+||++|+ +|
T Consensus       176 ~~~~~~~~~~~~--~~~~~~p~gG~~~l~~~l~~---~~g~~I~l~~~V~~~i  223 (384)
T 2bi7_A          176 PVRFNYDDNYFN--HKFQGMPKCGYTQMIKSILN---HENIKVDLQREFIVEE  223 (384)
T ss_dssp             CCCSSSCCCSCC--CSEEEEETTHHHHHHHHHHC---STTEEEEESCCCCGGG
T ss_pred             cccccccccccc--ccccEEECcCHHHHHHHHHh---cCCCEEEECCeeehhh
Confidence            000000001111  2353 999999999998864   5789999999999 77

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=99.51  E-value=3.6e-13  Score=145.69  Aligned_cols=101  Identities=11%  Similarity=-0.031  Sum_probs=73.2

Q ss_pred             ceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCC------CcEEEcCEEEEC-CCCCCCCCC
Q 011414          270 ALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS------GQDILSHKLVLD-PSFTVPGSL  342 (486)
Q Consensus       270 ~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~------G~~i~A~~VI~~-p~~~~~~l~  342 (486)
                      .+..+.||++.|+++|++     +..|+||++|++|..+  ++. +.|++.+      |++++||+||++ |...+.++.
T Consensus       392 ~~~~~~gG~~~l~~~La~-----~l~I~l~~~V~~I~~~--~~~-v~V~~~~~~~~~~~~~~~Ad~VI~tvP~~vL~~l~  463 (662)
T 2z3y_A          392 SHLTVRNGYSCVPVALAE-----GLDIKLNTAVRQVRYT--ASG-CEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQP  463 (662)
T ss_dssp             CCEEETTCTTHHHHHHTT-----TCEEETTEEEEEEEEE--TTE-EEEEEEESSCTTCEEEEEESEEEECCCHHHHHCSS
T ss_pred             ceeeecCcHHHHHHHHHh-----cCceecCCeEEEEEEC--CCc-EEEEEeecccCCCCeEEEeCEEEECCCHHHHhccc
Confidence            356789999999998865     4589999999999987  443 4566554      568999999975 443333311


Q ss_pred             --cccchhhhhhhhhhccCCCcceEEEEEEEecCCCCC
Q 011414          343 --ASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP  378 (486)
Q Consensus       343 --~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~~~  378 (486)
                        ..+.|+||..+....+...++.+.|.++.+++++-+
T Consensus       464 ~~i~f~P~LP~~k~~Ai~~l~~g~~~KV~l~f~~~fW~  501 (662)
T 2z3y_A          464 PAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWD  501 (662)
T ss_dssp             CSSEEESCCCHHHHHHHHHSEECCCEEEEEECSSCCSC
T ss_pred             CceEEcCCCCHHHHHHHHhCCccceeEEEEEcCccccc
Confidence              236778887655544555678889999999998744

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=99.51  E-value=3.2e-13  Score=148.59  Aligned_cols=101  Identities=11%  Similarity=-0.031  Sum_probs=72.5

Q ss_pred             ceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCC------CcEEEcCEEEEC-CCCCCCCCC
Q 011414          270 ALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS------GQDILSHKLVLD-PSFTVPGSL  342 (486)
Q Consensus       270 ~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~------G~~i~A~~VI~~-p~~~~~~l~  342 (486)
                      .++.++||++.|+++|++     +..|+||++|++|..+  ++. +.|++.+      |++++||+||++ |...+..+.
T Consensus       563 ~~~~~~gG~~~L~~aLa~-----~l~I~Lnt~V~~I~~~--~~g-V~V~~~~~~~~~~g~~i~AD~VIvTvPl~vLk~l~  634 (852)
T 2xag_A          563 SHLTVRNGYSCVPVALAE-----GLDIKLNTAVRQVRYT--ASG-CEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQP  634 (852)
T ss_dssp             CCEEETTCTTHHHHHHTT-----TCCEECSEEEEEEEEE--TTE-EEEEEEESSSTTCEEEEEESEEEECCCHHHHHCSS
T ss_pred             ceEEecCcHHHHHHHHHh-----CCCEEeCCeEEEEEEc--CCc-EEEEEeecccCCCCeEEECCEEEECCCHHHHHhhh
Confidence            367899999999998865     3479999999999987  444 4566544      568999999976 443333321


Q ss_pred             --cccchhhhhhhhhhccCCCcceEEEEEEEecCCCCC
Q 011414          343 --ASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP  378 (486)
Q Consensus       343 --~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~~~  378 (486)
                        ..+.|+||..+....+...++.+.+.++.+++++-+
T Consensus       635 ~~I~F~P~LP~~k~~AI~~l~~g~v~KV~L~F~~~fW~  672 (852)
T 2xag_A          635 PAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWD  672 (852)
T ss_dssp             CSSEEESCCCHHHHHHHHHSEECCCEEEEEECSSCCSC
T ss_pred             cccccCCCCCHHHHHHHHcCCccceEEEEEEcCCcccC
Confidence              236778887655544555677888988889998644

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=99.46  E-value=1.8e-13  Score=146.78  Aligned_cols=105  Identities=9%  Similarity=-0.019  Sum_probs=70.3

Q ss_pred             eEeecCCcchHHHHHHHHHHHcCcEEEeCCcee--EEEEecCCC-----eEEEE-EeCCCc--EEEcCEEEEC-CCCCC-
Q 011414          271 LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVI--SLLTDQNSG-----SYKGV-RLASGQ--DILSHKLVLD-PSFTV-  338 (486)
Q Consensus       271 ~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~--~I~~~~~~g-----~~~gV-~~~~G~--~i~A~~VI~~-p~~~~-  338 (486)
                      +.++.||++.|+++|.+.+. .|+.|+|+++|+  +|..+. ++     ..+.| ...+|+  ++.||+||++ |...+ 
T Consensus       339 ~~~i~GG~~~L~~aLa~~l~-~g~~I~l~~~V~~~~I~~~~-~g~~~~~~~V~V~~~~~G~~~~~~aD~VIvTvP~~~L~  416 (721)
T 3ayj_A          339 YTLPVTENVEFIRNLFLKAQ-NVGAGKLVVQVRQERVANAC-HSGTASARAQLLSYDSHNAVHSEAYDFVILAVPHDQLT  416 (721)
T ss_dssp             ECCSSSSTHHHHHHHHHHHH-HHTTTSEEEEEECEEEEEEE-ECSSSSCCEEEEEEETTCCEEEEEESEEEECSCHHHHH
T ss_pred             eeEECCcHHHHHHHHHHhcc-cCCceEeCCEEEeeeEEECC-CCCccccceEEEEEecCCceEEEEcCEEEECCCHHHHh
Confidence            66899999999999987653 278899999999  998863 33     13456 446777  7899999974 43221 


Q ss_pred             -----CCCC-------c---------cc---chh-h-h-------hhhhhhccCCCcceEEEEEEEe-----cCCCC
Q 011414          339 -----PGSL-------A---------SS---HQQ-L-Q-------ESFQAFSLSDNKGKVARGICIT-----RSSLK  377 (486)
Q Consensus       339 -----~~l~-------~---------~~---~~~-l-~-------~~~~~l~~~~~~~~v~r~i~i~-----~~~~~  377 (486)
                           ..+.       .         ++   .++ | |       ..+....++..++...|..+.+     ++||=
T Consensus       417 ~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~pplLlp~~~~~~~~~~~~Ai~~l~~~~s~Kv~l~~~~~~~~~~fW  493 (721)
T 3ayj_A          417 PIVSRSGFEHAASQNLGDAGLGLETHTYNQVYPPLLLSDSSPAANARIVTAIGQLHMARSSKVFATVKTAALDQPWV  493 (721)
T ss_dssp             HHHSSSCSSCEEEEEESCGGGTCCCEEEEEEBCSSCCCSSCHHHHHHHHHHHHTCCEECEEEEEEEEEGGGGGSTTS
T ss_pred             hccccccccccccccccccccccccccccccCCcccCCcccccccHHHHHHHHhcCcccceEEEEEEccccCCCCcc
Confidence                 1110       0         00   222 3 4       4444444666788889998888     78863

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=99.45  E-value=2.5e-12  Score=127.82  Aligned_cols=99  Identities=10%  Similarity=-0.001  Sum_probs=70.7

Q ss_pred             EeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC-CCCCCCCCCcccchhhh
Q 011414          272 IYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSLASSHQQLQ  350 (486)
Q Consensus       272 ~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~-p~~~~~~l~~~~~~~l~  350 (486)
                      +.+.+|+..+.++|++.   .|++|+++++|++|..+  +++ +.|++.+|++++||.||+. |.....+|+...++.+|
T Consensus       105 ~~~~~g~~~l~~~l~~~---~g~~i~~~~~V~~i~~~--~~~-~~v~~~~g~~~~ad~vV~A~p~~~~~~ll~~~~~~l~  178 (342)
T 3qj4_A          105 FVAPQGISSIIKHYLKE---SGAEVYFRHRVTQINLR--DDK-WEVSKQTGSPEQFDLIVLTMPVPEILQLQGDITTLIS  178 (342)
T ss_dssp             EECTTCTTHHHHHHHHH---HTCEEESSCCEEEEEEC--SSS-EEEEESSSCCEEESEEEECSCHHHHTTCBSTHHHHSC
T ss_pred             eecCCCHHHHHHHHHHh---cCCEEEeCCEEEEEEEc--CCE-EEEEECCCCEEEcCEEEECCCHHHHHHHhcccccccC
Confidence            46788999999988764   38999999999999886  444 4688888988999999964 54433455433344555


Q ss_pred             hhhhhhccCCCcceEEEEEEEecCCC
Q 011414          351 ESFQAFSLSDNKGKVARGICITRSSL  376 (486)
Q Consensus       351 ~~~~~l~~~~~~~~v~r~i~i~~~~~  376 (486)
                      +......+...+..+.+..+.+++++
T Consensus       179 ~~~~~~l~~~~~~~~~~v~l~~~~~~  204 (342)
T 3qj4_A          179 ECQRQQLEAVSYSSRYALGLFYEAGT  204 (342)
T ss_dssp             HHHHHHHHTCCBCCEEEEEEECSSCC
T ss_pred             HHHHHHHhcCCccccEEEEEEECCCC
Confidence            54444334556777888788888763

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.24  E-value=3.3e-11  Score=120.24  Aligned_cols=61  Identities=18%  Similarity=0.209  Sum_probs=48.1

Q ss_pred             eEeecCC---cchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCC--cEEEcCEEEEC
Q 011414          271 LIYPIYG---QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG--QDILSHKLVLD  333 (486)
Q Consensus       271 ~~~p~gG---~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G--~~i~A~~VI~~  333 (486)
                      ...|..|   ...+.++|.+.++..|++++++++|++|..+  ++..+.|++.+|  .+++||.||..
T Consensus       139 ~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~--~~~~~~v~~~~g~~~~~~a~~VV~A  204 (369)
T 3dme_A          139 LVSPSTGIVDSHALMLAYQGDAESDGAQLVFHTPLIAGRVR--PEGGFELDFGGAEPMTLSCRVLINA  204 (369)
T ss_dssp             EEETTCEEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEEC--TTSSEEEEECTTSCEEEEEEEEEEC
T ss_pred             eECCCCEEECHHHHHHHHHHHHHHCCCEEECCCEEEEEEEc--CCceEEEEECCCceeEEEeCEEEEC
Confidence            3455555   2588999999999999999999999999886  444356888888  47999999853

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.20  E-value=1.6e-10  Score=118.76  Aligned_cols=60  Identities=22%  Similarity=0.223  Sum_probs=51.6

Q ss_pred             eEeecC-C---cchHHHHHHHHHHHcCcEEEeCC---ceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE
Q 011414          271 LIYPIY-G---QGELPQAFCRRAAVKGCLYVLRM---PVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (486)
Q Consensus       271 ~~~p~g-G---~~~L~qal~r~~~~~Gg~i~l~~---~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~  332 (486)
                      ++.+.+ |   ...+.++|.+.++..|++|++++   +|++|..+  ++++++|++.+|++++||+||+
T Consensus       149 ~~~~~~~g~~~~~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~--~~~v~gV~t~~G~~i~Ad~VV~  215 (438)
T 3dje_A          149 YFARSGAGWAHARNALVAAAREAQRMGVKFVTGTPQGRVVTLIFE--NNDVKGAVTADGKIWRAERTFL  215 (438)
T ss_dssp             EEESSSCEEECHHHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEE--TTEEEEEEETTTEEEECSEEEE
T ss_pred             EEeCCCCEEecHHHHHHHHHHHHHhcCCEEEeCCcCceEEEEEec--CCeEEEEEECCCCEEECCEEEE
Confidence            455666 5   25889999999999999999999   99999887  7788889999998999999985

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=99.12  E-value=5.5e-10  Score=121.20  Aligned_cols=59  Identities=19%  Similarity=0.206  Sum_probs=50.1

Q ss_pred             eEeecCCc---chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE
Q 011414          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (486)
Q Consensus       271 ~~~p~gG~---~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~  332 (486)
                      ..+|.+|.   ..+.++|.+.++..|++|+++++|++|..+  +++ ++|++.+|++++||.||+
T Consensus       406 ~~~p~~g~v~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~--~~~-v~V~t~~G~~i~Ad~VVl  467 (676)
T 3ps9_A          406 ITYPQGGWLCPAELTRNVLELAQQQGLQIYYQYQLQNFSRK--DDC-WLLNFAGDQQATHSVVVL  467 (676)
T ss_dssp             EEETTCEEECHHHHHHHHHHHHHHTTCEEEESCCEEEEEEE--TTE-EEEEETTSCEEEESEEEE
T ss_pred             EEecCCeeeCHHHHHHHHHHHHHhCCCEEEeCCeeeEEEEe--CCe-EEEEECCCCEEECCEEEE
Confidence            45666664   588999999999999999999999999987  555 588888888999999985

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=99.11  E-value=9.4e-10  Score=110.29  Aligned_cols=59  Identities=17%  Similarity=0.129  Sum_probs=48.8

Q ss_pred             eEeecCCc---chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC
Q 011414          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (486)
Q Consensus       271 ~~~p~gG~---~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~  333 (486)
                      +++|.+|.   ..+.++|.+.++..|++|+++++|++|..+  +++ ++|++.+| +++||+||+.
T Consensus       143 ~~~~~~~~~~~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~--~~~-~~V~t~~g-~i~a~~VV~A  204 (381)
T 3nyc_A          143 TYDPTGADIDTDALHQGYLRGIRRNQGQVLCNHEALEIRRV--DGA-WEVRCDAG-SYRAAVLVNA  204 (381)
T ss_dssp             EEETTCEEECHHHHHHHHHHHHHHTTCEEESSCCCCEEEEE--TTE-EEEECSSE-EEEESEEEEC
T ss_pred             EEcCCCceECHHHHHHHHHHHHHHCCCEEEcCCEEEEEEEe--CCe-EEEEeCCC-EEEcCEEEEC
Confidence            45666663   588999999999999999999999999887  555 68887777 8999999953

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=99.06  E-value=9.1e-11  Score=110.76  Aligned_cols=45  Identities=27%  Similarity=0.334  Sum_probs=42.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchh
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIA   67 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~   67 (486)
                      +||+|||||++||+||..|+++|++|+||||++.+||++.+...+
T Consensus         3 ~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~GG~~~~~~~~   47 (336)
T 3kkj_A            3 VPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMSSKRSD   47 (336)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEEEET
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccccC
Confidence            799999999999999999999999999999999999999876543

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=99.05  E-value=5e-09  Score=109.77  Aligned_cols=42  Identities=26%  Similarity=0.383  Sum_probs=39.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (486)
                      .++||||||+|++||+||+.|+++|++|+||||.+..||...
T Consensus        40 ~~~DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~~~~GG~s~   81 (510)
T 4at0_A           40 YEADVVVAGYGIAGVAASIEAARAGADVLVLERTSGWGGATA   81 (510)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGG
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcch
Confidence            469999999999999999999999999999999999998753

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.03  E-value=8.9e-10  Score=112.35  Aligned_cols=58  Identities=10%  Similarity=0.113  Sum_probs=48.6

Q ss_pred             eEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE
Q 011414          271 LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (486)
Q Consensus       271 ~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~  332 (486)
                      ..+|......+.++|.+.++..|++|+++++|++|..+  ++. +.|++.+| +++||.||+
T Consensus       124 ~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~--~~~-~~V~~~~g-~i~ad~VIl  181 (417)
T 3v76_A          124 QLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERT--ASG-FRVTTSAG-TVDAASLVV  181 (417)
T ss_dssp             EEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEE--TTE-EEEEETTE-EEEESEEEE
T ss_pred             EEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEe--CCE-EEEEECCc-EEEeeEEEE
Confidence            35676666799999999999999999999999999876  444 67888777 899999984

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=99.03  E-value=1.6e-09  Score=117.66  Aligned_cols=59  Identities=17%  Similarity=0.180  Sum_probs=48.7

Q ss_pred             eEeecCCc---chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCc-EEEcCEEEE
Q 011414          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ-DILSHKLVL  332 (486)
Q Consensus       271 ~~~p~gG~---~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~-~i~A~~VI~  332 (486)
                      +.+|.+|.   ..+.++|.+.++..|++|+++++|++|..+  +++ +.|++.+|+ +++||.||+
T Consensus       401 ~~~p~~g~v~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~--~~~-v~V~t~~G~~~i~Ad~VVl  463 (689)
T 3pvc_A          401 IHYPAGGWLCPSDLTHALMMLAQQNGMTCHYQHELQRLKRI--DSQ-WQLTFGQSQAAKHHATVIL  463 (689)
T ss_dssp             EEETTCEEECHHHHHHHHHHHHHHTTCEEEESCCEEEEEEC--SSS-EEEEEC-CCCCEEESEEEE
T ss_pred             EEecCCeEECHHHHHHHHHHHHHhCCCEEEeCCeEeEEEEe--CCe-EEEEeCCCcEEEECCEEEE
Confidence            55676664   588999999999999999999999999886  444 578888887 899999985

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.02  E-value=5.7e-09  Score=104.84  Aligned_cols=60  Identities=25%  Similarity=0.244  Sum_probs=48.9

Q ss_pred             eEeecCCc---chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC
Q 011414          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (486)
Q Consensus       271 ~~~p~gG~---~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~  333 (486)
                      ++.|..|.   ..+.++|.+.++..|++++.+++|++|..+  ++++++|++.+| +++||.||..
T Consensus       138 ~~~~~~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~--~~~v~gv~~~~g-~i~a~~VV~A  200 (382)
T 1y56_B          138 SWNPTDGKADPFEATTAFAVKAKEYGAKLLEYTEVKGFLIE--NNEIKGVKTNKG-IIKTGIVVNA  200 (382)
T ss_dssp             EEETTCCEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEES--SSBEEEEEETTE-EEECSEEEEC
T ss_pred             EEcCCCeeECHHHHHHHHHHHHHHCCCEEECCceEEEEEEE--CCEEEEEEECCc-EEECCEEEEC
Confidence            44565553   578899999999999999999999999876  667777888777 7999999853

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=99.01  E-value=1.2e-08  Score=103.22  Aligned_cols=60  Identities=25%  Similarity=0.346  Sum_probs=50.0

Q ss_pred             eEeecCCcc---hHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC
Q 011414          271 LIYPIYGQG---ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (486)
Q Consensus       271 ~~~p~gG~~---~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~  333 (486)
                      .++|..|..   .+.++|.+.++..|++++++++|++|..+  ++++++|++.+| +++||.||..
T Consensus       163 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~--~~~~~~v~~~~g-~~~a~~vV~a  225 (405)
T 2gag_B          163 TWQPRAGIAKHDHVAWAFARKANEMGVDIIQNCEVTGFIKD--GEKVTGVKTTRG-TIHAGKVALA  225 (405)
T ss_dssp             EEETTCBBCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEES--SSBEEEEEETTC-CEEEEEEEEC
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHHCCCEEEcCCeEEEEEEe--CCEEEEEEeCCc-eEECCEEEEC
Confidence            556766654   78899999999999999999999999876  667788988777 7999998853

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=98.99  E-value=3.5e-09  Score=109.08  Aligned_cols=60  Identities=20%  Similarity=0.327  Sum_probs=51.1

Q ss_pred             eEeecCC-cchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE
Q 011414          271 LIYPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (486)
Q Consensus       271 ~~~p~gG-~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~  332 (486)
                      ..+|..+ ...+.++|.+.++..|++|+++++|++|..+  ++++++|++.+|++++||.||+
T Consensus       125 ~~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~--~~~v~~V~~~~G~~i~Ad~VVl  185 (447)
T 2i0z_A          125 RMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYE--NGQTKAVILQTGEVLETNHVVI  185 (447)
T ss_dssp             EEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEE--TTEEEEEEETTCCEEECSCEEE
T ss_pred             EEECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEec--CCcEEEEEECCCCEEECCEEEE
Confidence            3567554 4688999999999999999999999999887  6777899998898899999884

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=98.98  E-value=2.7e-08  Score=105.64  Aligned_cols=53  Identities=17%  Similarity=0.235  Sum_probs=44.6

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeC--CCc--EEEcCEEEE
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA--SGQ--DILSHKLVL  332 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~--~G~--~i~A~~VI~  332 (486)
                      ..+.+.|.+.++..|++|+++++|++|..++ ++++++|++.  +|+  +++||.||+
T Consensus       255 ~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~-~g~v~Gv~~~~~~g~~~~i~a~~VVl  311 (571)
T 1y0p_A          255 AHVVQVLYDNAVKRNIDLRMNTRGIEVLKDD-KGTVKGILVKGMYKGYYWVKADAVIL  311 (571)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEECT-TSCEEEEEEEETTTEEEEEECSEEEE
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEeeEeEEcC-CCeEEEEEEEeCCCcEEEEECCeEEE
Confidence            5788999999999999999999999998861 3788888765  676  689999885

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=98.97  E-value=1.8e-08  Score=107.00  Aligned_cols=59  Identities=22%  Similarity=0.193  Sum_probs=47.9

Q ss_pred             EeecCC---cchHHHHHHHHHHHcCcEEEeCCceeEEEEecCC-CeEEEEEeC--CCc--EEEcCEEEE
Q 011414          272 IYPIYG---QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNS-GSYKGVRLA--SGQ--DILSHKLVL  332 (486)
Q Consensus       272 ~~p~gG---~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~-g~~~gV~~~--~G~--~i~A~~VI~  332 (486)
                      .+|.+|   ...+.++|.+.++..|++|+++++|++|..+  + +++++|++.  +|+  +++||.||+
T Consensus       240 ~~~~~~~~~~~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~--~~g~v~Gv~~~~~~g~~~~i~A~~VVl  306 (566)
T 1qo8_A          240 HRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVN--DDHSVVGAVVHGKHTGYYMIGAKSVVL  306 (566)
T ss_dssp             EECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEEC--TTSBEEEEEEEETTTEEEEEEEEEEEE
T ss_pred             eecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEC--CCCcEEEEEEEeCCCcEEEEEcCEEEE
Confidence            345554   2578899999999999999999999999886  5 888888765  676  689998885

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=98.93  E-value=3.9e-09  Score=110.90  Aligned_cols=53  Identities=23%  Similarity=0.269  Sum_probs=46.4

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~  333 (486)
                      ..+.++|.+.++..|++|+++++|++|..+  ++++++|++.+|+++.||.||+.
T Consensus       220 ~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~--~~~v~gV~l~~G~~i~Ad~VVlA  272 (549)
T 3nlc_A          220 VTMIEKMRATIIELGGEIRFSTRVDDLHME--DGQITGVTLSNGEEIKSRHVVLA  272 (549)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCCEEEEEES--SSBEEEEEETTSCEEECSCEEEC
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEEe--CCEEEEEEECCCCEEECCEEEEC
Confidence            467788888888899999999999999876  67788899999999999999953

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=98.87  E-value=4.1e-08  Score=108.95  Aligned_cols=60  Identities=25%  Similarity=0.273  Sum_probs=50.0

Q ss_pred             eEeecCCc---chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC
Q 011414          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (486)
Q Consensus       271 ~~~p~gG~---~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~  333 (486)
                      +++|..|.   ..+.++|.+.++..|++|+++++|++|..+  ++++++|++.+| +++||+||..
T Consensus       140 ~~~~~~g~v~p~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~--~~~v~~V~t~~G-~i~Ad~VV~A  202 (830)
T 1pj5_A          140 LHVPSDGLASAARAVQLLIKRTESAGVTYRGSTTVTGIEQS--GGRVTGVQTADG-VIPADIVVSC  202 (830)
T ss_dssp             EEETTCEEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEEE--TTEEEEEEETTE-EEECSEEEEC
T ss_pred             EEECCCceEcHHHHHHHHHHHHHHcCCEEECCceEEEEEEe--CCEEEEEEECCc-EEECCEEEEC
Confidence            45566664   378999999999999999999999999887  677778888777 7999999853

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=98.79  E-value=2.7e-09  Score=107.16  Aligned_cols=42  Identities=26%  Similarity=0.403  Sum_probs=38.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (486)
                      |++|||||||||++||++|..|+++|++|+|+||++.+|...
T Consensus         2 Me~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~~   43 (397)
T 3oz2_A            2 METYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPV   43 (397)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCC
Confidence            567999999999999999999999999999999998887643

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=98.77  E-value=2.3e-07  Score=98.48  Aligned_cols=52  Identities=23%  Similarity=0.319  Sum_probs=43.9

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCC-CeEEEEEeC--CCc--EEEcCEEEE
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNS-GSYKGVRLA--SGQ--DILSHKLVL  332 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~-g~~~gV~~~--~G~--~i~A~~VI~  332 (486)
                      ..+.+.|.+.++..|++|+++++|++|..+  + +++++|++.  +|+  +++||.||+
T Consensus       255 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~--~~g~v~GV~~~~~~G~~~~i~A~~VVl  311 (572)
T 1d4d_A          255 AHVAQVLWDNAVKRGTDIRLNSRVVRILED--ASGKVTGVLVKGEYTGYYVIKADAVVI  311 (572)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEEC----CCEEEEEEEETTTEEEEEECSEEEE
T ss_pred             HHHHHHHHHHHHHcCCeEEecCEEEEEEEC--CCCeEEEEEEEeCCCcEEEEEcCEEEE
Confidence            478899999999999999999999999876  5 788888765  675  589999885

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.62  E-value=1.9e-08  Score=99.01  Aligned_cols=43  Identities=14%  Similarity=0.127  Sum_probs=38.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhh--CCCcEEEEccCCCCCCCccc
Q 011414           21 TAFDLIVIGTGLPESVISAAASA--SGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~--~G~~VlvlE~~~~~GG~~~s   63 (486)
                      .++||+|||+|.+||+||.+|++  .|++|+|+|+++++||.+..
T Consensus        64 ~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~~~  108 (326)
T 3fpz_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWL  108 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceEEe
Confidence            35799999999999999999974  59999999999999998764

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.56  E-value=3.4e-08  Score=96.11  Aligned_cols=41  Identities=22%  Similarity=0.199  Sum_probs=35.1

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (486)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (486)
                      .|++|||||||+|.+||+||.+|+|+|++|+++|++. +||.
T Consensus         3 ~M~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~-~gg~   43 (304)
T 4fk1_A            3 AMKYIDCAVIGAGPAGLNASLVLGRARKQIALFDNNT-NRNR   43 (304)
T ss_dssp             ---CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC-CGGG
T ss_pred             CCCCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC-CCCe
Confidence            5788999999999999999999999999999999975 5554

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.54  E-value=4e-08  Score=96.53  Aligned_cols=59  Identities=8%  Similarity=0.070  Sum_probs=40.1

Q ss_pred             CCCCCCCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEcc----CCCCCCCcccc
Q 011414            6 SESELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDP----NPFYGSHFSSL   64 (486)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~----~~~~GG~~~s~   64 (486)
                      ...+++.|.-++..+..+||+|||||++||++|..|++.|++|+|+|+    +..+||.+...
T Consensus         6 ~~~~~~~~~~~~~~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~   68 (338)
T 3itj_A            6 HHHHHSSGLVPRGSHVHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTT   68 (338)
T ss_dssp             ---------------CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGS
T ss_pred             cccccccCCCCCCCCCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccc
Confidence            344455554444455679999999999999999999999999999999    45899987653

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.53  E-value=5.3e-08  Score=94.98  Aligned_cols=41  Identities=20%  Similarity=0.371  Sum_probs=37.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (486)
                      .+|||||||+|.+|++||..|++.|++|+++|++ .+||.+.
T Consensus         5 ~~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~-~~gG~~~   45 (312)
T 4gcm_A            5 IDFDIAIIGAGPAGMTAAVYASRANLKTVMIERG-IPGGQMA   45 (312)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGG
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCCeee
Confidence            4699999999999999999999999999999985 6788664

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.46  E-value=1.9e-06  Score=87.62  Aligned_cols=56  Identities=14%  Similarity=0.175  Sum_probs=48.5

Q ss_pred             cchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEECCC
Q 011414          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS  335 (486)
Q Consensus       278 ~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~p~  335 (486)
                      ..++.+.+.+.++..|.++++++.|++|..+  ++++.+|++++|+++.||.||+...
T Consensus       193 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~--~~~v~~v~l~dG~~i~aD~Vv~a~G  248 (415)
T 3lxd_A          193 GEALSEFYQAEHRAHGVDLRTGAAMDCIEGD--GTKVTGVRMQDGSVIPADIVIVGIG  248 (415)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEETCCEEEEEES--SSBEEEEEESSSCEEECSEEEECSC
T ss_pred             CHHHHHHHHHHHHhCCCEEEECCEEEEEEec--CCcEEEEEeCCCCEEEcCEEEECCC
Confidence            4578888889999999999999999999875  6777889999999999999996543

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.44  E-value=1.3e-07  Score=92.06  Aligned_cols=36  Identities=14%  Similarity=0.162  Sum_probs=33.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      ..|||||||+|.+|++||..|++.|++|+++|++..
T Consensus         3 ~~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~   38 (314)
T 4a5l_A            3 NIHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMA   38 (314)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSG
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence            459999999999999999999999999999999763

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.43  E-value=8.3e-08  Score=99.96  Aligned_cols=50  Identities=30%  Similarity=0.390  Sum_probs=39.6

Q ss_pred             CCCCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcccc
Q 011414           14 PYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (486)
Q Consensus        14 ~~~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~   64 (486)
                      .|+..+ .++||+|||||.+|++||..|++.|++|+++|+++.+||.|...
T Consensus        18 ~~~~~m-~~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~GG~~~~~   67 (491)
T 3urh_A           18 LYFQSM-MAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGTCLNV   67 (491)
T ss_dssp             ---------CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHH
T ss_pred             cchhhc-ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccc
Confidence            466644 46999999999999999999999999999999999999976643

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=98.43  E-value=1.5e-07  Score=94.34  Aligned_cols=59  Identities=17%  Similarity=0.208  Sum_probs=47.9

Q ss_pred             eEeecCCc---chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC
Q 011414          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (486)
Q Consensus       271 ~~~p~gG~---~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~  333 (486)
                      +.+|.+|.   .++.++|.+.++..|++++++++|++|..+  ++++ +|++.+| +++||.||..
T Consensus       153 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~--~~~~-~v~~~~g-~~~a~~vV~A  214 (382)
T 1ryi_A          153 SFIQDDVHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERD--GEAL-FIKTPSG-DVWANHVVVA  214 (382)
T ss_dssp             EEETTCCBCCHHHHHHHHHHHHHHTTCEEETTCCCCEEECS--SSSE-EEEETTE-EEEEEEEEEC
T ss_pred             EEeCCCeEEcHHHHHHHHHHHHHHCCCEEEcCCcEEEEEEE--CCEE-EEEcCCc-eEEcCEEEEC
Confidence            55666665   578999999999999999999999999875  5554 7877766 8999999853

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=98.42  E-value=1.3e-07  Score=93.36  Aligned_cols=44  Identities=25%  Similarity=0.285  Sum_probs=41.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s   63 (486)
                      |+++||+|||||++|+++|..|++.|++|+++|+++.+||.|..
T Consensus         1 m~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~   44 (357)
T 4a9w_A            1 MDSVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQH   44 (357)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGG
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccC
Confidence            45689999999999999999999999999999999999998764

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.41  E-value=1.1e-07  Score=98.99  Aligned_cols=52  Identities=21%  Similarity=0.280  Sum_probs=43.9

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~  333 (486)
                      .++.+.+.+.++..|.+++++++|++|..+  +++ +.|++.+|+++.||.||+.
T Consensus       232 ~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~--~~~-v~v~~~~g~~i~aD~Vi~A  283 (484)
T 3o0h_A          232 YDLRQLLNDAMVAKGISIIYEATVSQVQST--ENC-YNVVLTNGQTICADRVMLA  283 (484)
T ss_dssp             HHHHHHHHHHHHHHTCEEESSCCEEEEEEC--SSS-EEEEETTSCEEEESEEEEC
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEee--CCE-EEEEECCCcEEEcCEEEEe
Confidence            467888888889999999999999999875  444 4788899999999999853

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.41  E-value=2.9e-07  Score=89.88  Aligned_cols=56  Identities=14%  Similarity=0.193  Sum_probs=46.4

Q ss_pred             CCCCCCCCCCCCCC------------------CcccEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCCCCCcc
Q 011414            7 ESELPVPPYPPIEP------------------TAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus         7 ~~~~~~~~~~~~~~------------------~~~DViIIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~GG~~~   62 (486)
                      +..||.+.++++..                  .++||+|||+|++||+||..|+++  |++|+|+|+++.+||...
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~  107 (326)
T 2gjc_A           32 KEDWSDFKFAPIRESTVSRAMTSRYFKDLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSW  107 (326)
T ss_dssp             STTCTTCCCCCCCHHHHHHHHHHHHHHHHHHTTEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTT
T ss_pred             hcCCCccccccccccccchhhhhhhhhhhcccCcCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCcccccccc
Confidence            45677776665432                  346999999999999999999999  999999999999987543

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=98.40  E-value=9.9e-08  Score=96.71  Aligned_cols=43  Identities=26%  Similarity=0.277  Sum_probs=39.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (486)
                      |.++||||||||++|++||..|++.|.+|+|+|+++.+|+.+.
T Consensus         2 M~~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~   44 (401)
T 2gqf_A            2 SQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKIL   44 (401)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHH
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcE
Confidence            5679999999999999999999999999999999999887553

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=98.39  E-value=1.9e-07  Score=94.19  Aligned_cols=58  Identities=22%  Similarity=0.219  Sum_probs=45.2

Q ss_pred             eEeecCCc---chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE
Q 011414          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (486)
Q Consensus       271 ~~~p~gG~---~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~  332 (486)
                      ++.|.+|.   ..+.++|.+.++..|++|+++++|++|..+  ++. +.|++.+| +++|+.||.
T Consensus       142 ~~~~~~g~~~~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~--~~~-v~v~t~~g-~i~a~~VV~  202 (397)
T 2oln_A          142 FLQPDGGTIDVRGTLAALFTLAQAAGATLRAGETVTELVPD--ADG-VSVTTDRG-TYRAGKVVL  202 (397)
T ss_dssp             EEETTCEEEEHHHHHHHHHHHHHHTTCEEEESCCEEEEEEE--TTE-EEEEESSC-EEEEEEEEE
T ss_pred             EEcCCCCEEcHHHHHHHHHHHHHHcCCEEECCCEEEEEEEc--CCe-EEEEECCC-EEEcCEEEE
Confidence            44565553   468889999899999999999999999876  454 45766554 799999885

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.38  E-value=2.6e-07  Score=100.32  Aligned_cols=61  Identities=15%  Similarity=0.185  Sum_probs=49.3

Q ss_pred             CCCCCCCCCCCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414            2 TGNESESELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s   63 (486)
                      +|.|.+..|+.+.+++ ....+||||||||++||+||..|++.|++|+|+|+++++||.+..
T Consensus       372 ~g~e~~~~~~~~~~~~-~~~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~~  432 (690)
T 3k30_A          372 MGEEWRRGWHPERIRA-KESDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQ  432 (690)
T ss_dssp             TTTTTTTCCCSSCCCC-CSSCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHHH
T ss_pred             cCcccccccCccccCc-ccccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEeee
Confidence            3555555565444444 346789999999999999999999999999999999999998664

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.38  E-value=7.4e-06  Score=82.88  Aligned_cols=56  Identities=16%  Similarity=0.240  Sum_probs=48.8

Q ss_pred             cchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEECCC
Q 011414          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS  335 (486)
Q Consensus       278 ~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~p~  335 (486)
                      ..++.+.+.+.++..|.++++++.|++|..+  ++++.+|++++|+++.||.||+...
T Consensus       183 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~--~~~v~~V~~~dG~~i~aD~Vv~a~G  238 (404)
T 3fg2_P          183 TPEISSYFHDRHSGAGIRMHYGVRATEIAAE--GDRVTGVVLSDGNTLPCDLVVVGVG  238 (404)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSCCEEEEEEE--TTEEEEEEETTSCEEECSEEEECCC
T ss_pred             CHHHHHHHHHHHHhCCcEEEECCEEEEEEec--CCcEEEEEeCCCCEEEcCEEEECcC
Confidence            4578888989999999999999999999876  6788889999999999999996433

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=98.37  E-value=2e-07  Score=98.71  Aligned_cols=60  Identities=27%  Similarity=0.351  Sum_probs=48.7

Q ss_pred             eEeecCCc--chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCC---C--cEEEcCEEEE
Q 011414          271 LIYPIYGQ--GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS---G--QDILSHKLVL  332 (486)
Q Consensus       271 ~~~p~gG~--~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~---G--~~i~A~~VI~  332 (486)
                      +.|+.+-.  ..+..++.+.++..|++|+++++|++|..+  ++++++|++.+   |  .+++|+.||.
T Consensus       160 ~~~~dg~vd~~~l~~~L~~~a~~~G~~i~~~~~V~~l~~~--~g~v~gV~~~d~~tg~~~~i~A~~VV~  226 (561)
T 3da1_A          160 GIYVEYRTDDARLTLEIMKEAVARGAVALNYMKVESFIYD--QGKVVGVVAKDRLTDTTHTIYAKKVVN  226 (561)
T ss_dssp             EEEEEEECCHHHHHHHHHHHHHHTTCEEEESEEEEEEEEE--TTEEEEEEEEETTTCCEEEEEEEEEEE
T ss_pred             EEecCceEcHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEc--CCeEEEEEEEEcCCCceEEEECCEEEE
Confidence            55665432  578999999999999999999999999987  77888888753   4  4689999884

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.37  E-value=1.7e-07  Score=92.15  Aligned_cols=45  Identities=20%  Similarity=0.337  Sum_probs=40.6

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s   63 (486)
                      ++..+||+|||||++|+++|..|++.|++|+++|+++.+||.+..
T Consensus         2 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~   46 (335)
T 2zbw_A            2 AADHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTA   46 (335)
T ss_dssp             -CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHH
T ss_pred             CCCcCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeec
Confidence            345799999999999999999999999999999999999987753

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=98.36  E-value=2.3e-07  Score=89.42  Aligned_cols=41  Identities=17%  Similarity=0.191  Sum_probs=37.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhC-CCcEEEEccCCCCCCCc
Q 011414           21 TAFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFYGSHF   61 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~-G~~VlvlE~~~~~GG~~   61 (486)
                      .++||||||||++||++|..|++. |.+|+|+|+++.+||.+
T Consensus        38 ~~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~   79 (284)
T 1rp0_A           38 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGA   79 (284)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTT
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCce
Confidence            468999999999999999999997 99999999999998743

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.35  E-value=2.1e-07  Score=92.68  Aligned_cols=45  Identities=18%  Similarity=0.254  Sum_probs=40.3

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s   63 (486)
                      ++..+||+|||+|++|+++|..|++.|++|+++|+++.+||.+..
T Consensus        11 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~   55 (360)
T 3ab1_A           11 HHDMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAA   55 (360)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHH
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCcccc
Confidence            455799999999999999999999999999999999999987753

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.34  E-value=1.7e-07  Score=96.87  Aligned_cols=43  Identities=23%  Similarity=0.260  Sum_probs=40.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s   63 (486)
                      .+|||||||||.+|++||..|++.|++|+++|+++.+||.|..
T Consensus         3 ~~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~   45 (466)
T 3l8k_A            3 LKYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLY   45 (466)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHH
T ss_pred             ccceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcccc
Confidence            4699999999999999999999999999999999999998764

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=98.34  E-value=2.4e-07  Score=97.78  Aligned_cols=47  Identities=17%  Similarity=0.265  Sum_probs=41.2

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccc
Q 011414           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS   65 (486)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~   65 (486)
                      .+..+||||||||++|+.+|..|++.|++|+|+|+++.+||.|....
T Consensus        18 ~~~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~   64 (549)
T 4ap3_A           18 GTTSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNR   64 (549)
T ss_dssp             --CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCC
T ss_pred             CCCCCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCC
Confidence            34578999999999999999999999999999999999999776433

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=98.34  E-value=2.7e-07  Score=93.52  Aligned_cols=41  Identities=20%  Similarity=0.124  Sum_probs=34.8

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      .++.+||||||||++||++|+.|+++|++|+|+|+++.++.
T Consensus        20 ~~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~   60 (407)
T 3rp8_A           20 FQGHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKP   60 (407)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC--
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCC
Confidence            45679999999999999999999999999999999987653

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=98.33  E-value=4.2e-07  Score=90.56  Aligned_cols=40  Identities=18%  Similarity=0.133  Sum_probs=35.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      ..++||||||+|++|+++|+.|+++|++|+|||++...+|
T Consensus         4 ~~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~~~~g   43 (363)
T 1c0p_A            4 HSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDV   43 (363)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTCT
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccCCCCc
Confidence            3578999999999999999999999999999999875443

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=98.32  E-value=3.3e-07  Score=91.44  Aligned_cols=58  Identities=19%  Similarity=0.293  Sum_probs=45.8

Q ss_pred             eEeecCCc---chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE
Q 011414          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (486)
Q Consensus       271 ~~~p~gG~---~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~  332 (486)
                      ++.|..|.   ..+.++|.+.++..|++++.+++|++|..+  ++. +.|++.+| +++||+||.
T Consensus       138 ~~~~~~g~~~~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~--~~~-~~v~~~~g-~~~a~~vV~  198 (372)
T 2uzz_A          138 LFETDSGFLRSELAIKTWIQLAKEAGCAQLFNCPVTAIRHD--DDG-VTIETADG-EYQAKKAIV  198 (372)
T ss_dssp             EEESSCEEEEHHHHHHHHHHHHHHTTCEEECSCCEEEEEEC--SSS-EEEEESSC-EEEEEEEEE
T ss_pred             EEeCCCcEEcHHHHHHHHHHHHHHCCCEEEcCCEEEEEEEc--CCE-EEEEECCC-eEEcCEEEE
Confidence            44555553   478899999999999999999999999876  444 56777777 599999885

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=98.32  E-value=3.6e-07  Score=92.71  Aligned_cols=43  Identities=16%  Similarity=0.205  Sum_probs=37.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCc-EEEEccCCCCCCCcc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKS-VLHLDPNPFYGSHFS   62 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~-VlvlE~~~~~GG~~~   62 (486)
                      |..+||||||||++||++|..|+++|.+ |+|+|+++.++....
T Consensus         2 ~~~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~g~   45 (410)
T 3c96_A            2 SEPIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGV   45 (410)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCccccee
Confidence            4578999999999999999999999999 999999988765433

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=98.30  E-value=4.4e-07  Score=92.20  Aligned_cols=53  Identities=15%  Similarity=0.171  Sum_probs=41.6

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCc--EEEcCEEEE
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ--DILSHKLVL  332 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~--~i~A~~VI~  332 (486)
                      ..+.+.|.+.++..|++++.+++|++|..+. ++..+.|++.+|+  +++||.||.
T Consensus       106 ~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~-~~~~v~v~~~~g~~~~~~a~~vV~  160 (421)
T 3nix_A          106 GNFDKTLADEAARQGVDVEYEVGVTDIKFFG-TDSVTTIEDINGNKREIEARFIID  160 (421)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEEET-TEEEEEEEETTSCEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC-CEEEEEEEcCCCCEEEEEcCEEEE
Confidence            3556677777788899999999999998872 3444567778888  699999884

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.29  E-value=4.3e-07  Score=89.25  Aligned_cols=40  Identities=13%  Similarity=0.133  Sum_probs=37.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCCCCCc
Q 011414           22 AFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHF   61 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~GG~~   61 (486)
                      ++||||||+|++||++|+.|++.  |++|+|+|+++.+||.+
T Consensus        79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~  120 (344)
T 3jsk_A           79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGA  120 (344)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTT
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCcc
Confidence            58999999999999999999997  99999999999998754

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=98.29  E-value=4.8e-07  Score=94.47  Aligned_cols=51  Identities=20%  Similarity=0.100  Sum_probs=43.0

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEe---CCCc--EEEcCEEEE
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~--~i~A~~VI~  332 (486)
                      ..+.++|.+.++..|++++.+++|++|..+  + ++++|++   .+|+  +++||.||.
T Consensus       149 ~~l~~~l~~~a~~~Gv~i~~~~~V~~l~~~--~-~~~~V~~~d~~~G~~~~i~A~~VV~  204 (501)
T 2qcu_A          149 ARLVLANAQMVVRKGGEVLTRTRATSARRE--N-GLWIVEAEDIDTGKKYSWQARGLVN  204 (501)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSEEEEEEEEE--T-TEEEEEEEETTTCCEEEEEESCEEE
T ss_pred             HHHHHHHHHHHHHcCCEEEcCcEEEEEEEe--C-CEEEEEEEECCCCCEEEEECCEEEE
Confidence            578899999999999999999999999876  4 4577877   3676  789999884

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=98.28  E-value=5.2e-07  Score=91.16  Aligned_cols=41  Identities=12%  Similarity=0.122  Sum_probs=37.2

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (486)
                      +..+||+|||||++||++|..|++.|.+|+|+|+++.++.+
T Consensus        24 ~~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~   64 (398)
T 2xdo_A           24 LSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREAR   64 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCC
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCcccc
Confidence            35689999999999999999999999999999999877653

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.28  E-value=3.3e-07  Score=94.68  Aligned_cols=52  Identities=13%  Similarity=0.241  Sum_probs=43.1

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEE-eCCCcEEEcCEEEEC
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVR-LASGQDILSHKLVLD  333 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~-~~~G~~i~A~~VI~~  333 (486)
                      .++.+.+.+.++..|.+++++++|++|..+  ++..+.|+ +.+|+ +.||.||+.
T Consensus       211 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~--~~~~~~v~~~~~g~-i~aD~Vv~a  263 (463)
T 4dna_A          211 QDMRRGLHAAMEEKGIRILCEDIIQSVSAD--ADGRRVATTMKHGE-IVADQVMLA  263 (463)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEC--TTSCEEEEESSSCE-EEESEEEEC
T ss_pred             HHHHHHHHHHHHHCCCEEECCCEEEEEEEc--CCCEEEEEEcCCCe-EEeCEEEEe
Confidence            477888889999999999999999999875  33335788 88888 999999853

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.28  E-value=6.2e-07  Score=92.14  Aligned_cols=44  Identities=23%  Similarity=0.252  Sum_probs=40.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCC--cEEEEccCCCCCCCccc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGK--SVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~--~VlvlE~~~~~GG~~~s   63 (486)
                      +..+||+|||||++||++|..|++.|.  +|+|+|+++.+||.|..
T Consensus         4 ~~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~   49 (447)
T 2gv8_A            4 PTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNY   49 (447)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSC
T ss_pred             CCCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecC
Confidence            356899999999999999999999999  99999999999997754

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=98.27  E-value=5.4e-07  Score=95.02  Aligned_cols=44  Identities=20%  Similarity=0.317  Sum_probs=40.9

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (486)
                      .+.++||||||||++|+++|..|++.|++|+|+|+++.+||.|.
T Consensus        13 ~~~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~   56 (542)
T 1w4x_A           13 PPEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWY   56 (542)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHH
T ss_pred             CCCCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccc
Confidence            44579999999999999999999999999999999999999775

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=98.27  E-value=6.2e-07  Score=89.94  Aligned_cols=51  Identities=18%  Similarity=0.220  Sum_probs=42.1

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~  333 (486)
                      ..+.++|.+.++..|++++++++|++|..+  ++. +.|++.+| +++||.||..
T Consensus       150 ~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~--~~~-~~v~~~~g-~~~a~~vV~A  200 (389)
T 2gf3_A          150 ENCIRAYRELAEARGAKVLTHTRVEDFDIS--PDS-VKIETANG-SYTADKLIVS  200 (389)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEC--SSC-EEEEETTE-EEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHCCCEEEcCcEEEEEEec--CCe-EEEEeCCC-EEEeCEEEEe
Confidence            588899999999999999999999999876  444 46776555 7999999853

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.27  E-value=5.7e-07  Score=87.51  Aligned_cols=40  Identities=18%  Similarity=0.275  Sum_probs=37.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s   63 (486)
                      .+||+|||||++|+++|..|++.|++|+++|++  +||.+..
T Consensus        15 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~gg~~~~   54 (323)
T 3f8d_A           15 KFDVIIVGLGPAAYGAALYSARYMLKTLVIGET--PGGQLTE   54 (323)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--TTGGGGG
T ss_pred             ccCEEEECccHHHHHHHHHHHHCCCcEEEEecc--CCCeecc
Confidence            589999999999999999999999999999999  8988765

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.26  E-value=3.8e-07  Score=89.21  Aligned_cols=42  Identities=21%  Similarity=0.324  Sum_probs=39.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (486)
                      ..+||+|||||++||+||..|++.|++|+++|+++.+||.+.
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~   47 (332)
T 3lzw_A            6 KVYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLS   47 (332)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHH
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceeh
Confidence            358999999999999999999999999999999999999885

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.26  E-value=6.5e-07  Score=89.79  Aligned_cols=41  Identities=15%  Similarity=0.066  Sum_probs=36.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (486)
                      |..+||||||||++||++|..|++.|++|+|+|+++.+++.
T Consensus         9 m~~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~   49 (379)
T 3alj_A            9 GKTRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAF   49 (379)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCC
Confidence            45689999999999999999999999999999999988753

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.26  E-value=5.7e-07  Score=87.79  Aligned_cols=43  Identities=28%  Similarity=0.384  Sum_probs=38.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s   63 (486)
                      +.++||+|||+|++|+++|..|++.|++|+++|+ ..+||.+..
T Consensus        14 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~gg~~~~   56 (319)
T 3cty_A           14 ERDFDVVIVGAGAAGFSAAVYAARSGFSVAILDK-AVAGGLTAE   56 (319)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SSTTGGGGG
T ss_pred             cCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeC-CCCCccccc
Confidence            3468999999999999999999999999999999 568887653

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=98.25  E-value=6.5e-07  Score=83.50  Aligned_cols=36  Identities=17%  Similarity=0.285  Sum_probs=33.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      |.++||||||+|++|+.+|..|++.|.+|+++|++.
T Consensus         1 M~~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~   36 (232)
T 2cul_A            1 MAAYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSL   36 (232)
T ss_dssp             -CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            356999999999999999999999999999999984

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.24  E-value=6.2e-07  Score=92.94  Aligned_cols=41  Identities=22%  Similarity=0.239  Sum_probs=37.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (486)
                      .+|||||||+|.+|++||..|++.|++|+++|+++..||.+
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~gG~~   42 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKT   42 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSB
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCccCCCC
Confidence            46999999999999999999999999999999998655554

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.24  E-value=7.5e-07  Score=93.46  Aligned_cols=46  Identities=33%  Similarity=0.437  Sum_probs=41.8

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        18 ~~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s   63 (486)
                      .++.++||||||||.+|++||..|++.|++|+|+|+++.+||.|..
T Consensus        39 ~~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~   84 (523)
T 1mo9_A           39 NDPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPH   84 (523)
T ss_dssp             TCCSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHH
T ss_pred             CCCCcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCcccc
Confidence            3456799999999999999999999999999999999989998753

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=98.24  E-value=5.4e-07  Score=92.48  Aligned_cols=60  Identities=18%  Similarity=0.298  Sum_probs=48.0

Q ss_pred             eEeecCCc---chHHHHHHHHHHHcCcEEEeCCceeEEEE---------------ecCCCeEEEEEeCCCcEE--EcCEE
Q 011414          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLT---------------DQNSGSYKGVRLASGQDI--LSHKL  330 (486)
Q Consensus       271 ~~~p~gG~---~~L~qal~r~~~~~Gg~i~l~~~V~~I~~---------------~~~~g~~~gV~~~~G~~i--~A~~V  330 (486)
                      ++++..|.   ..+.++|.+.++..|++|+.+++|++|..               +  ++++++|++.+| ++  +||.|
T Consensus       170 ~~~~~~~~~~~~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~--~~~v~~V~t~~g-~i~~~Ad~V  246 (448)
T 3axb_A          170 VLIRSAGFLDAEKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQ--EARASAAVLSDG-TRVEVGEKL  246 (448)
T ss_dssp             EEESSEEECCHHHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTS--CEEEEEEEETTS-CEEEEEEEE
T ss_pred             EEeCCCeEEcHHHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccC--CCceEEEEeCCC-EEeecCCEE
Confidence            44455443   48899999999999999999999999987               4  566678888777 68  99999


Q ss_pred             EEC
Q 011414          331 VLD  333 (486)
Q Consensus       331 I~~  333 (486)
                      |..
T Consensus       247 V~A  249 (448)
T 3axb_A          247 VVA  249 (448)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            853

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=98.23  E-value=9.2e-07  Score=89.30  Aligned_cols=38  Identities=18%  Similarity=0.228  Sum_probs=35.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (486)
                      +..+||+|||||++||++|..|+++|++|+|+|+++..
T Consensus         3 ~~~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   40 (397)
T 2vou_A            3 PTTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQP   40 (397)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            45689999999999999999999999999999999874

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.23  E-value=7.7e-07  Score=93.31  Aligned_cols=45  Identities=29%  Similarity=0.366  Sum_probs=40.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC--------CCCCCcccc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP--------FYGSHFSSL   64 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~--------~~GG~~~s~   64 (486)
                      +.+|||||||+|.+|++||..|++.|++|+++|+++        .+||.|...
T Consensus        30 ~~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~   82 (519)
T 3qfa_A           30 SYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNV   82 (519)
T ss_dssp             SCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTCHHHHH
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccccCCCcccccCCc
Confidence            357999999999999999999999999999999965        789977543

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=98.23  E-value=9.8e-07  Score=90.86  Aligned_cols=53  Identities=21%  Similarity=0.209  Sum_probs=43.9

Q ss_pred             CCCCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414            9 ELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus         9 ~~~~~~~~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (486)
                      .|..|. ++...+.+||+|||+|.+||+||..|++.|++|+|+|+++++||.+.
T Consensus       110 ~~~~~~-~~~~~~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~  162 (456)
T 2vdc_G          110 GWVKPR-TPSRELGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLV  162 (456)
T ss_dssp             TCCCCC-CSCSSCCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHH
T ss_pred             CCCCCC-CCcCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeee
Confidence            455332 23334678999999999999999999999999999999999999754

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.23  E-value=6.8e-07  Score=87.48  Aligned_cols=43  Identities=19%  Similarity=0.315  Sum_probs=39.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s   63 (486)
                      +..+||+|||+|++|+++|..|++.|++|+++|++ .+||.+..
T Consensus         6 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~   48 (325)
T 2q7v_A            6 AHDYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG-MPGGQIAW   48 (325)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGGG
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC-CCCccccc
Confidence            35689999999999999999999999999999999 78987754

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.22  E-value=5.4e-07  Score=89.73  Aligned_cols=44  Identities=18%  Similarity=0.292  Sum_probs=39.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCC-cEEEEccCCCCCCCcccc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFYGSHFSSL   64 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~-~VlvlE~~~~~GG~~~s~   64 (486)
                      |.++||+|||||++|+++|..|++.|+ +|+++|+++ +||.+..+
T Consensus         2 m~~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~Gg~~~~~   46 (369)
T 3d1c_A            2 MQHHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VGHSFKHW   46 (369)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TTHHHHTS
T ss_pred             CccCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CCCccccC
Confidence            457899999999999999999999999 999999999 99866543

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.21  E-value=6.9e-07  Score=86.67  Aligned_cols=42  Identities=19%  Similarity=0.294  Sum_probs=38.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEE-EccCCCCCCCccc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLH-LDPNPFYGSHFSS   63 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~Vlv-lE~~~~~GG~~~s   63 (486)
                      .++||+|||||++||+||..|++.|++|++ +|+ +.+||.+..
T Consensus         3 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~-~~~gG~~~~   45 (315)
T 3r9u_A            3 AMLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEK-GMPGGQITS   45 (315)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHTCSCEEEECS-SSTTGGGGG
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCCeEEEEeC-CCCCceeee
Confidence            468999999999999999999999999999 999 788998754

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=98.21  E-value=1.1e-06  Score=93.32  Aligned_cols=52  Identities=13%  Similarity=0.104  Sum_probs=42.3

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeC-CC--cEEEcCEEEE
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SG--QDILSHKLVL  332 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~-~G--~~i~A~~VI~  332 (486)
                      ..+.+.|.+.++..|++++.+++|++|..+  ++..++|++. +|  ++++||.||.
T Consensus       128 ~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~--~g~~~~V~~~~~G~~~~i~AdlVV~  182 (591)
T 3i3l_A          128 EEFDKLLLDEARSRGITVHEETPVTDVDLS--DPDRVVLTVRRGGESVTVESDFVID  182 (591)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCEEEEECC--STTCEEEEEEETTEEEEEEESEEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEc--CCCEEEEEEecCCceEEEEcCEEEE
Confidence            467777888888899999999999999875  4556788876 67  5799999984

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.18  E-value=9.7e-07  Score=93.00  Aligned_cols=46  Identities=22%  Similarity=0.298  Sum_probs=41.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS   65 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~   65 (486)
                      +.++||||||||++|+.+|..|++.|++|+|+|+++.+||.|....
T Consensus         7 ~~~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~   52 (545)
T 3uox_A            7 SPALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNR   52 (545)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCC
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCC
Confidence            4568999999999999999999999999999999999999875433

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=98.18  E-value=7.6e-07  Score=93.70  Aligned_cols=46  Identities=17%  Similarity=0.173  Sum_probs=41.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHh-hCCCcEEEEccCCCCCCCccccc
Q 011414           20 PTAFDLIVIGTGLPESVISAAAS-ASGKSVLHLDPNPFYGSHFSSLS   65 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La-~~G~~VlvlE~~~~~GG~~~s~~   65 (486)
                      +.++||||||||++|+.+|..|+ +.|++|+|+|+++.+||.+....
T Consensus         6 ~~~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~   52 (540)
T 3gwf_A            6 THTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNR   52 (540)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccC
Confidence            45689999999999999999999 99999999999999999776443

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.18  E-value=5.8e-07  Score=93.23  Aligned_cols=43  Identities=19%  Similarity=0.285  Sum_probs=38.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s   63 (486)
                      +.++||||||+|.+|++||..|++.|++|+++|++ .+||.|..
T Consensus        18 ~~~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~-~~GG~~~~   60 (478)
T 3dk9_A           18 VASYDYLVIGGGSGGLASARRAAELGARAAVVESH-KLGGTCVN   60 (478)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHH
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCcccc
Confidence            45799999999999999999999999999999976 78988754

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=98.18  E-value=9.8e-07  Score=89.45  Aligned_cols=58  Identities=16%  Similarity=0.088  Sum_probs=40.8

Q ss_pred             eEeecCCc---chHHHHHHHHHHHcCcEEEeCCcee---------EEEEecCCCeEEEEEeCCCcEEEcCEEEE
Q 011414          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVI---------SLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (486)
Q Consensus       271 ~~~p~gG~---~~L~qal~r~~~~~Gg~i~l~~~V~---------~I~~~~~~g~~~gV~~~~G~~i~A~~VI~  332 (486)
                      .+.+..|.   ..+.++|.+.++..|++++.+++|+         +|..+  ++++ +|++.+| +++||.||.
T Consensus       161 ~~~~~~g~v~~~~l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~--~~~v-~v~~~~g-~i~a~~VV~  230 (405)
T 3c4n_A          161 RVDPRALTYRPGSLALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVT--NTHQ-IVVHETR-QIRAGVIIV  230 (405)
T ss_dssp             EEETTCEEECHHHHHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC----------CBCCE-EEEEEEEEE
T ss_pred             EEcCCCEEEcHHHHHHHHHHHHHHCCCEEEcCCEEEeccccccccceEee--CCeE-EEEECCc-EEECCEEEE
Confidence            33455553   5788999999999999999999999         88665  4554 7776666 899999885

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.18  E-value=5e-07  Score=93.67  Aligned_cols=44  Identities=18%  Similarity=0.257  Sum_probs=40.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s   63 (486)
                      +.++||||||+|.+|++||..|++.|++|+++|+++.+||.|..
T Consensus         3 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~   46 (478)
T 1v59_A            3 NKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLN   46 (478)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHH
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCccce
Confidence            35699999999999999999999999999999999999997654

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=98.18  E-value=7.9e-07  Score=94.53  Aligned_cols=53  Identities=15%  Similarity=0.207  Sum_probs=43.8

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEe---CCCc--EEEcCEEEE
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~--~i~A~~VI~  332 (486)
                      .++.++|.+.+...|.+|++++.|++|..++ +++++||..   .+|+  +++|+.||+
T Consensus       143 ~~l~~~L~~~~~~~gv~i~~~~~v~~L~~~~-~g~v~Gv~~~~~~~g~~~~i~A~~VVl  200 (588)
T 2wdq_A          143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQ-DGAVVGCTALCIETGEVVYFKARATVL  200 (588)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETEEEEEEEECT-TSCEEEEEEEETTTCCEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEeCcEEEEEEECC-CCEEEEEEEEEcCCCeEEEEEcCEEEE
Confidence            5788999999999999999999999998742 577888875   4675  589999884

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=98.17  E-value=1.1e-06  Score=91.89  Aligned_cols=52  Identities=23%  Similarity=0.226  Sum_probs=41.8

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEe--CCCc--EEEcCEEEE
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL--ASGQ--DILSHKLVL  332 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~--~~G~--~i~A~~VI~  332 (486)
                      ..+.+.|.+.++..|++++++++|++|..+  ++++.+|++  .+|+  +++||.||.
T Consensus       111 ~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~--~~~v~gv~~~~~dG~~~~i~ad~VI~  166 (512)
T 3e1t_A          111 ARFDDMLLRNSERKGVDVRERHEVIDVLFE--GERAVGVRYRNTEGVELMAHARFIVD  166 (512)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCEEEEEEEE--TTEEEEEEEECSSSCEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEE--CCEEEEEEEEeCCCCEEEEEcCEEEE
Confidence            356777888888899999999999999887  677666655  4574  799999984

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.17  E-value=1e-06  Score=91.06  Aligned_cols=44  Identities=18%  Similarity=0.229  Sum_probs=40.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s   63 (486)
                      ..++||||||+|.+|++||..|++.|++|+++|+++.+||.|..
T Consensus         4 ~~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~   47 (470)
T 1dxl_A            4 SDENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLN   47 (470)
T ss_dssp             CCCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHH
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCccccccC
Confidence            35699999999999999999999999999999999999998754

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=98.17  E-value=1.4e-06  Score=93.68  Aligned_cols=52  Identities=13%  Similarity=0.116  Sum_probs=41.8

Q ss_pred             chHHHHHHHHHHHc--CcEEEeCCceeEEEEecCCC---eEEEEEe---CCCc--EEEcCEEEE
Q 011414          279 GELPQAFCRRAAVK--GCLYVLRMPVISLLTDQNSG---SYKGVRL---ASGQ--DILSHKLVL  332 (486)
Q Consensus       279 ~~L~qal~r~~~~~--Gg~i~l~~~V~~I~~~~~~g---~~~gV~~---~~G~--~i~A~~VI~  332 (486)
                      .++.++|.+.+...  |.+|+.++.|.+|..+  ++   +++||..   .+|+  .|+|+.||+
T Consensus       166 ~~i~~~L~~~a~~~~~gV~i~~~~~v~dLi~~--~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVL  227 (662)
T 3gyx_A          166 ESYKVIVAEAAKNALGQDRIIERIFIVKLLLD--KNTPNRIAGAVGFNLRANEVHIFKANAMVV  227 (662)
T ss_dssp             TSHHHHHHHHHHHHHCTTTEECSEEECCCEEC--SSSTTBEEEEEEEESSSSCEEEEECSEEEE
T ss_pred             HHHHHHHHHHHHhcCCCcEEEEceEEEEEEEe--CCccceEEEEEEEEcCCCcEEEEEeCEEEE
Confidence            46778888888887  9999999999999887  44   8888864   3564  589999884

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.17  E-value=1e-06  Score=86.71  Aligned_cols=44  Identities=20%  Similarity=0.286  Sum_probs=38.8

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s   63 (486)
                      ++..+||+|||+|++|+++|..|++.|++|+++|++ .+||.+..
T Consensus        11 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~   54 (335)
T 2a87_A           11 HHPVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGT-SFGGALMT   54 (335)
T ss_dssp             CCCCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCS-SCSCGGGS
T ss_pred             cCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceec
Confidence            446799999999999999999999999999999975 78887643

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.17  E-value=1.1e-06  Score=91.52  Aligned_cols=45  Identities=29%  Similarity=0.312  Sum_probs=40.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEcc--------CCCCCCCcccc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDP--------NPFYGSHFSSL   64 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~--------~~~~GG~~~s~   64 (486)
                      ..+|||||||+|.+|++||..|++.|++|+++|+        +..+||.|...
T Consensus         4 ~~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~   56 (488)
T 3dgz_A            4 QQSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNV   56 (488)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTSCCCCTTCHHHHH
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecccccccccCCcCCeeccc
Confidence            3569999999999999999999999999999998        66899977543

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.16  E-value=6.9e-07  Score=93.02  Aligned_cols=40  Identities=25%  Similarity=0.385  Sum_probs=37.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (486)
                      +|||||||||.+|++||..|++.|++|+++|++. +||.|.
T Consensus         8 ~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~~-~GGtc~   47 (492)
T 3ic9_A            8 NVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGA-YGTTCA   47 (492)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTCSCEEEEESSC-SSCHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC-CCCccc
Confidence            5999999999999999999999999999999974 999764

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=98.16  E-value=1.2e-06  Score=95.60  Aligned_cols=44  Identities=20%  Similarity=0.286  Sum_probs=40.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s   63 (486)
                      ...+||+|||||.+||.||..|++.|++|+++|+++++||.+..
T Consensus       387 ~~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~~  430 (729)
T 1o94_A          387 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQ  430 (729)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHH
T ss_pred             cCCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeeee
Confidence            35689999999999999999999999999999999999998764

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.16  E-value=1.2e-06  Score=88.43  Aligned_cols=52  Identities=13%  Similarity=0.118  Sum_probs=41.9

Q ss_pred             chHHHHHHHHHHHc-CcEEEeCCceeEEEEecCCCeEE-EEEeCCCcEEEcCEEEE
Q 011414          279 GELPQAFCRRAAVK-GCLYVLRMPVISLLTDQNSGSYK-GVRLASGQDILSHKLVL  332 (486)
Q Consensus       279 ~~L~qal~r~~~~~-Gg~i~l~~~V~~I~~~~~~g~~~-gV~~~~G~~i~A~~VI~  332 (486)
                      ..+.+.|.+.+... |++|+++++|++|..+  ++.++ .|++.+|++++||.||.
T Consensus       107 ~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~--~~~v~g~v~~~~g~~~~ad~vV~  160 (399)
T 2x3n_A          107 ESLRRLVLEKIDGEATVEMLFETRIEAVQRD--ERHAIDQVRLNDGRVLRPRVVVG  160 (399)
T ss_dssp             HHHHHHHHHHHTTCTTEEEECSCCEEEEEEC--TTSCEEEEEETTSCEEEEEEEEE
T ss_pred             HHHHHHHHHHhhhcCCcEEEcCCEEEEEEEc--CCceEEEEEECCCCEEECCEEEE
Confidence            46677777877777 8999999999999876  44433 68888999999999884

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.16  E-value=7e-07  Score=91.90  Aligned_cols=51  Identities=18%  Similarity=0.156  Sum_probs=41.5

Q ss_pred             hHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeC---CCc--EEEcCEEEE
Q 011414          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SGQ--DILSHKLVL  332 (486)
Q Consensus       280 ~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~---~G~--~i~A~~VI~  332 (486)
                      .+.+.|.+.+...|.++++++.|++|..+  ++++++|++.   +|+  +++||.||.
T Consensus       101 ~l~~~L~~~a~~~gv~i~~~~~v~~i~~~--~~~v~gv~~~~~~~G~~~~~~ad~VV~  156 (453)
T 3atr_A          101 LYNQRVLKEAQDRGVEIWDLTTAMKPIFE--DGYVKGAVLFNRRTNEELTVYSKVVVE  156 (453)
T ss_dssp             HHHHHHHHHHHHTTCEEESSEEEEEEEEE--TTEEEEEEEEETTTTEEEEEECSEEEE
T ss_pred             HHHHHHHHHHHHcCCEEEeCcEEEEEEEE--CCEEEEEEEEEcCCCceEEEEcCEEEE
Confidence            56677777788899999999999999887  6777667664   676  789999984

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.16  E-value=1.4e-06  Score=93.29  Aligned_cols=42  Identities=14%  Similarity=0.237  Sum_probs=38.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (486)
                      ..+||||||+|++|++||..|+++|++|+|+|+.+..||.+.
T Consensus        45 ~~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~gg~~~   86 (623)
T 3pl8_A           45 IKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLKI   86 (623)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSSSST
T ss_pred             ccCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCCCccc
Confidence            469999999999999999999999999999999999998553

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=98.15  E-value=1.4e-06  Score=92.01  Aligned_cols=41  Identities=12%  Similarity=0.112  Sum_probs=37.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (486)
                      .++||||||||++||++|+.|++.|.+|+|+||++.+++..
T Consensus        25 ~~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~~   65 (549)
T 2r0c_A           25 IETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHP   65 (549)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCC
Confidence            36899999999999999999999999999999998876443

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.15  E-value=8.3e-07  Score=91.92  Aligned_cols=44  Identities=25%  Similarity=0.335  Sum_probs=40.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s   63 (486)
                      +.++||||||||.+|++||..|++.|++|+++|+++.+||.|..
T Consensus         4 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~   47 (474)
T 1zmd_A            4 PIDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLN   47 (474)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSHHHHH
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCcccc
Confidence            45699999999999999999999999999999999999998754

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=98.15  E-value=1.7e-06  Score=90.93  Aligned_cols=39  Identities=23%  Similarity=0.352  Sum_probs=36.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (486)
                      ..++||||||||++||++|+.|++.|.+|+|+||++..+
T Consensus         3 ~~~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~   41 (535)
T 3ihg_A            3 DHEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLS   41 (535)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCC
T ss_pred             CccCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence            356899999999999999999999999999999998765

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=98.15  E-value=1.5e-06  Score=92.15  Aligned_cols=60  Identities=18%  Similarity=0.304  Sum_probs=47.2

Q ss_pred             eEeecCCc--chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeC---CCc--EEEcCEEEE
Q 011414          271 LIYPIYGQ--GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SGQ--DILSHKLVL  332 (486)
Q Consensus       271 ~~~p~gG~--~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~---~G~--~i~A~~VI~  332 (486)
                      +.|+.+..  ..+..++.+.++..|++|+.+++|++|..+  ++++++|++.   +|+  +++|+.||.
T Consensus       178 ~~~~dg~v~~~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~~--~~~v~gV~~~d~~tg~~~~i~A~~VV~  244 (571)
T 2rgh_A          178 GVYLDFRNNDARLVIDNIKKAAEDGAYLVSKMKAVGFLYE--GDQIVGVKARDLLTDEVIEIKAKLVIN  244 (571)
T ss_dssp             EEECCEECCHHHHHHHHHHHHHHTTCEEESSEEEEEEEEE--TTEEEEEEEEETTTCCEEEEEBSCEEE
T ss_pred             EEecCCeEchHHHHHHHHHHHHHcCCeEEeccEEEEEEEe--CCEEEEEEEEEcCCCCEEEEEcCEEEE
Confidence            45665432  468888989999999999999999999887  6777788753   344  699999884

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=98.15  E-value=9.7e-07  Score=94.88  Aligned_cols=52  Identities=15%  Similarity=0.221  Sum_probs=44.2

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEe---CCCc--EEEcCEEEE
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~--~i~A~~VI~  332 (486)
                      ..|.++|.+.+...|++|+.++.|.+|..+  +|+++||..   .+|+  .++|+.||+
T Consensus       158 ~~l~~~L~~~a~~~gv~i~~~~~v~~L~~~--~g~v~Gv~~~~~~~G~~~~i~A~~VVl  214 (660)
T 2bs2_A          158 HTMLFAVANECLKLGVSIQDRKEAIALIHQ--DGKCYGAVVRDLVTGDIIAYVAKGTLI  214 (660)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEEE--TTEEEEEEEEETTTCCEEEEECSEEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEECcEEEEEEec--CCEEEEEEEEECCCCcEEEEEcCEEEE
Confidence            378899999998999999999999999887  788888765   4676  489999884

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.15  E-value=9.2e-07  Score=91.42  Aligned_cols=42  Identities=24%  Similarity=0.323  Sum_probs=39.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s   63 (486)
                      ++||||||||.+|++||..|++.|++|+++|+++.+||.|..
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~   43 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGTCLN   43 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCcCCC
Confidence            489999999999999999999999999999999999998764

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.14  E-value=7.4e-07  Score=92.51  Aligned_cols=44  Identities=20%  Similarity=0.275  Sum_probs=40.2

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s   63 (486)
                      +.++||||||+|.+|++||..|++.|++|+++|+++.+||.+..
T Consensus         4 ~~~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~   47 (482)
T 1ojt_A            4 DAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLN   47 (482)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHH
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCceee
Confidence            34699999999999999999999999999999999999987643

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=98.14  E-value=1.3e-06  Score=92.93  Aligned_cols=40  Identities=15%  Similarity=0.257  Sum_probs=37.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhC------CCcEEEEccCCCCCCCc
Q 011414           22 AFDLIVIGTGLPESVISAAASAS------GKSVLHLDPNPFYGSHF   61 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~------G~~VlvlE~~~~~GG~~   61 (486)
                      ++||||||||++||+||+.|++.      |.+|+||||++.+|+..
T Consensus        35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~   80 (584)
T 2gmh_A           35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHT   80 (584)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTC
T ss_pred             CCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCcc
Confidence            58999999999999999999999      99999999999988753

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=98.14  E-value=1.3e-06  Score=92.06  Aligned_cols=41  Identities=17%  Similarity=0.317  Sum_probs=35.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (486)
                      ..++||||||+|++||+||+.|++ |.+|+||||++..||..
T Consensus         6 ~~~~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~~~g~s   46 (540)
T 1chu_A            6 EHSCDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPVTEGST   46 (540)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCTTC---
T ss_pred             CCCCCEEEECccHHHHHHHHHHhc-CCcEEEEECCCCCCCCh
Confidence            356899999999999999999999 99999999999877653

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=98.14  E-value=1.9e-06  Score=89.87  Aligned_cols=40  Identities=18%  Similarity=0.227  Sum_probs=36.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      +.++||+|||||++||++|+.|+++|.+|+|+||++.++.
T Consensus         9 ~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~   48 (500)
T 2qa1_A            9 RSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTG   48 (500)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CC
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence            4578999999999999999999999999999999987653

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.14  E-value=9.8e-07  Score=90.87  Aligned_cols=52  Identities=15%  Similarity=0.204  Sum_probs=43.4

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~  333 (486)
                      .++.+.+.+.++..|.+++++++|++|..+  ++. +.|++++|+++.||.||+.
T Consensus       208 ~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~--~~~-v~v~~~~g~~i~~D~vv~A  259 (455)
T 2yqu_A          208 LEVSRAAERVFKKQGLTIRTGVRVTAVVPE--AKG-ARVELEGGEVLEADRVLVA  259 (455)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEEEE--TTE-EEEEETTSCEEEESEEEEC
T ss_pred             HHHHHHHHHHHHHCCCEEEECCEEEEEEEe--CCE-EEEEECCCeEEEcCEEEEC
Confidence            578888888889999999999999999876  443 4677778999999999853

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.14  E-value=9.5e-07  Score=86.63  Aligned_cols=44  Identities=14%  Similarity=0.213  Sum_probs=39.2

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEcc----CCCCCCCccc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDP----NPFYGSHFSS   63 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~----~~~~GG~~~s   63 (486)
                      +..+||+|||+|++|+++|..|++.|++|+++|+    ....||.+..
T Consensus         6 ~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~   53 (333)
T 1vdc_A            6 THNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTT   53 (333)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGG
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeee
Confidence            4578999999999999999999999999999999    6778887543

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.13  E-value=9.6e-07  Score=91.18  Aligned_cols=42  Identities=26%  Similarity=0.491  Sum_probs=38.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s   63 (486)
                      +++||||||||++|++||..|++.|++|+++|++ .+||.+..
T Consensus         2 ~~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~-~~gG~~~~   43 (464)
T 2a8x_A            2 THYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK-YWGGVCLN   43 (464)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-CTTHHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC-CCCCcccc
Confidence            4689999999999999999999999999999998 78887643

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.12  E-value=1.3e-06  Score=90.25  Aligned_cols=43  Identities=19%  Similarity=0.261  Sum_probs=39.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s   63 (486)
                      +.++||||||||.+|++||..|++.|++|+++|++ .+||.|..
T Consensus         2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~GG~~~~   44 (467)
T 1zk7_A            2 EPPVQVAVIGSGGAAMAAALKAVEQGAQVTLIERG-TIGGTCVN   44 (467)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-STTHHHHH
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCC-CCCccccC
Confidence            35689999999999999999999999999999998 78987653

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.11  E-value=1.7e-06  Score=89.89  Aligned_cols=53  Identities=8%  Similarity=0.154  Sum_probs=40.9

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCc-----EEEcCEEEEC
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ-----DILSHKLVLD  333 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~-----~i~A~~VI~~  333 (486)
                      .++.+.+.+.++..|.++++++.|++|..+. ++. +.|++.+|+     ++.||.||+.
T Consensus       227 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~-~~~-~~v~~~~~~~~~~~~~~~D~vi~a  284 (483)
T 3dgh_A          227 QQMAELVAASMEERGIPFLRKTVPLSVEKQD-DGK-LLVKYKNVETGEESEDVYDTVLWA  284 (483)
T ss_dssp             HHHHHHHHHHHHHTTCCEEETEEEEEEEECT-TSC-EEEEEEETTTCCEEEEEESEEEEC
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CCc-EEEEEecCCCCceeEEEcCEEEEC
Confidence            4678888888899999999999999998652 333 356665554     7899999854

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=98.11  E-value=2.1e-06  Score=90.91  Aligned_cols=38  Identities=21%  Similarity=0.213  Sum_probs=33.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (486)
                      .++||||||||++||++|+.|+++|++|+|||+++.++
T Consensus        48 ~~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~   85 (570)
T 3fmw_A           48 LTTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPV   85 (570)
T ss_dssp             ---CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCC
Confidence            46899999999999999999999999999999998765

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=98.11  E-value=2.2e-06  Score=89.33  Aligned_cols=41  Identities=17%  Similarity=0.202  Sum_probs=37.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (486)
                      ...+||+|||||++||++|..|++.|++|+|+|+++.+|+.
T Consensus        90 ~~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~~  130 (497)
T 2bry_A           90 CTNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRH  130 (497)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCCC
T ss_pred             cCCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCCC
Confidence            35689999999999999999999999999999999988754

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.11  E-value=1.3e-06  Score=90.23  Aligned_cols=51  Identities=14%  Similarity=0.102  Sum_probs=42.7

Q ss_pred             hHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCc-EEEcCEEEEC
Q 011414          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ-DILSHKLVLD  333 (486)
Q Consensus       280 ~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~-~i~A~~VI~~  333 (486)
                      ++.+.+.+.++..|.++++++.|++|..+  ++. +.|++.+|+ ++.||.||+.
T Consensus       208 ~~~~~l~~~l~~~gv~i~~~~~v~~i~~~--~~~-~~v~~~~G~~~i~~D~vv~a  259 (463)
T 2r9z_A          208 LLSATLAENMHAQGIETHLEFAVAALERD--AQG-TTLVAQDGTRLEGFDSVIWA  259 (463)
T ss_dssp             HHHHHHHHHHHHTTCEEESSCCEEEEEEE--TTE-EEEEETTCCEEEEESEEEEC
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEe--CCe-EEEEEeCCcEEEEcCEEEEC
Confidence            67788888889999999999999999865  333 578888999 8999999853

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.11  E-value=1.2e-06  Score=85.33  Aligned_cols=42  Identities=12%  Similarity=0.187  Sum_probs=37.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (486)
                      |..+||+|||+|++|+++|..|++.|++|+++|++ .+||.+.
T Consensus         3 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~   44 (320)
T 1trb_A            3 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLT   44 (320)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCS-STTGGGG
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEccC-CCCceEe
Confidence            45689999999999999999999999999999974 7888654

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.11  E-value=2.1e-06  Score=83.27  Aligned_cols=40  Identities=18%  Similarity=0.306  Sum_probs=36.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-cEEEEccCCCCCCCccc
Q 011414           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~-~VlvlE~~~~~GG~~~s   63 (486)
                      |||+|||+|++|+++|..|++.|+ +|+++|++ .+||.+..
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~-~~gg~~~~   42 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKG-MPGGQITG   42 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCSSEEEECSS-STTCGGGG
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCcEEEEcCC-CCCccccc
Confidence            799999999999999999999999 99999995 78887653

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.09  E-value=1.3e-06  Score=90.69  Aligned_cols=54  Identities=4%  Similarity=-0.031  Sum_probs=43.0

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCC-cEEEcCEEEEC
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG-QDILSHKLVLD  333 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G-~~i~A~~VI~~  333 (486)
                      .++.+.+.+.++..|.++++++.|++|..+. +++.+.|++++| +++.||.||+.
T Consensus       226 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~-~~~~~~v~~~~G~~~i~~D~vv~a  280 (479)
T 2hqm_A          226 ECIQNTITDHYVKEGINVHKLSKIVKVEKNV-ETDKLKIHMNDSKSIDDVDELIWT  280 (479)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEEECC--CCCEEEEETTSCEEEEESEEEEC
T ss_pred             HHHHHHHHHHHHhCCeEEEeCCEEEEEEEcC-CCcEEEEEECCCcEEEEcCEEEEC
Confidence            3677888888899999999999999997641 332457888899 78999999853

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.08  E-value=1.3e-06  Score=89.74  Aligned_cols=53  Identities=8%  Similarity=0.079  Sum_probs=43.2

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~  333 (486)
                      .++.+.+.+.++..|.++++++.|++|..+  ++..+.|++.+|+++.||.||+.
T Consensus       208 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~--~~~~~~v~~~~g~~i~~D~vv~a  260 (450)
T 1ges_A          208 PMISETLVEVMNAEGPQLHTNAIPKAVVKN--TDGSLTLELEDGRSETVDCLIWA  260 (450)
T ss_dssp             HHHHHHHHHHHHHHSCEEECSCCEEEEEEC--TTSCEEEEETTSCEEEESEEEEC
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEEe--CCcEEEEEECCCcEEEcCEEEEC
Confidence            367888888889999999999999999765  32224677889999999999853

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=98.07  E-value=1.4e-06  Score=86.32  Aligned_cols=37  Identities=11%  Similarity=0.020  Sum_probs=33.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCC------CcEEEEccCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASG------KSVLHLDPNPFYGS   59 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G------~~VlvlE~~~~~GG   59 (486)
                      .||||||||++||++|+.|+++|      ++|+|||++...+|
T Consensus         1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~~~~~   43 (351)
T 3g3e_A            1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLT   43 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSCGGGS
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCCCCCC
Confidence            49999999999999999999998      99999999885544

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=98.07  E-value=1.8e-06  Score=92.07  Aligned_cols=52  Identities=19%  Similarity=0.320  Sum_probs=44.4

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEe---CCCc--EEEcCEEEE
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~--~i~A~~VI~  332 (486)
                      .+|.++|.+.+...|.+|+.++.|.+|..+  +|+++||..   .+|+  .++|+.||+
T Consensus       155 ~~l~~~L~~~~~~~gv~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~G~~~~i~A~~VVl  211 (621)
T 2h88_A          155 HSLLHTLYGRSLRYDTSYFVEYFALDLLME--NGECRGVIALCIEDGTIHRFRAKNTVI  211 (621)
T ss_dssp             HHHHHHHHHHHTTSCCEEEETEEEEEEEEE--TTEEEEEEEEETTTCCEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEEceEEEEEEEE--CCEEEEEEEEEcCCCcEEEEEcCeEEE
Confidence            478899999988899999999999999887  788888875   4676  589999884

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=98.07  E-value=2.5e-06  Score=90.17  Aligned_cols=51  Identities=12%  Similarity=0.188  Sum_probs=41.5

Q ss_pred             chHHHHHHHHHHH-cCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE
Q 011414          279 GELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (486)
Q Consensus       279 ~~L~qal~r~~~~-~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~  332 (486)
                      ..+.++|.+.++. .|.++ ++..|+.|..+  ++++++|++.+|++++|+.||+
T Consensus       123 ~~~~~~L~~~Le~~~GVeI-~~~~Vt~L~~e--~g~V~GV~t~dG~~i~AdaVVL  174 (637)
T 2zxi_A          123 KRYREYMKKVCENQENLYI-KQEEVVDIIVK--NNQVVGVRTNLGVEYKTKAVVV  174 (637)
T ss_dssp             HHHHHHHHHHHHTCTTEEE-EESCEEEEEES--SSBEEEEEETTSCEEECSEEEE
T ss_pred             HHHHHHHHHHHHhCCCCEE-EEeEEEEEEec--CCEEEEEEECCCcEEEeCEEEE
Confidence            3567777777777 47888 68899999876  6788899999999999999885

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=98.07  E-value=2.9e-06  Score=88.48  Aligned_cols=39  Identities=21%  Similarity=0.343  Sum_probs=36.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      .++||+|||||++||++|+.|+++|.+|+|+|+++.++.
T Consensus        11 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~   49 (499)
T 2qa2_A           11 SDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTG   49 (499)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Confidence            568999999999999999999999999999999987653

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.06  E-value=2.1e-06  Score=86.48  Aligned_cols=35  Identities=14%  Similarity=0.226  Sum_probs=33.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      ++||||||||++||++|+.|++.|++|+|+|+++.
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   36 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP   36 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            47999999999999999999999999999999864

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.05  E-value=2e-06  Score=89.53  Aligned_cols=53  Identities=13%  Similarity=0.139  Sum_probs=43.6

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~  333 (486)
                      .++.+.+.+.++..|.++++++.|++|..+  ++..+.|++.+|+++.||.||+.
T Consensus       231 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~--~~~~~~v~~~~G~~i~~D~vv~a  283 (490)
T 1fec_A          231 SELRKQLTEQLRANGINVRTHENPAKVTKN--ADGTRHVVFESGAEADYDVVMLA  283 (490)
T ss_dssp             HHHHHHHHHHHHHTTEEEEETCCEEEEEEC--TTSCEEEEETTSCEEEESEEEEC
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEc--CCCEEEEEECCCcEEEcCEEEEc
Confidence            367888888899999999999999999765  33235788889989999999853

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.05  E-value=1.7e-06  Score=89.41  Aligned_cols=43  Identities=30%  Similarity=0.377  Sum_probs=38.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s   63 (486)
                      |+++||||||+|.+|++||..|++.|++|+++|+++ +||.|..
T Consensus         4 m~~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~-~GG~~~~   46 (464)
T 2eq6_A            4 MKTYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE-VGGVCLN   46 (464)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHH
T ss_pred             cccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC-CCCCCCC
Confidence            346999999999999999999999999999999998 8987643

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.05  E-value=2.5e-06  Score=90.47  Aligned_cols=46  Identities=20%  Similarity=0.299  Sum_probs=35.8

Q ss_pred             CCCCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC-CCCC
Q 011414           14 PYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP-FYGS   59 (486)
Q Consensus        14 ~~~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~-~~GG   59 (486)
                      ...+....+|||||||||++|+.||..|++.|.+|+++|++. .+|+
T Consensus        13 ~~~~~~~~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~   59 (641)
T 3cp8_A           13 GLVPRGSHMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVAR   59 (641)
T ss_dssp             -------CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTC
T ss_pred             CccccccCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCC
Confidence            344555567999999999999999999999999999999985 4554

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=98.03  E-value=3.3e-06  Score=85.04  Aligned_cols=35  Identities=17%  Similarity=0.284  Sum_probs=32.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (486)
                      .+|+|||||++||++|..|+++|++|+|+||++.+
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~   36 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAA   36 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            47999999999999999999999999999997644

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.02  E-value=2.9e-06  Score=81.45  Aligned_cols=59  Identities=19%  Similarity=0.147  Sum_probs=43.4

Q ss_pred             eEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEECCCC
Q 011414          271 LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSF  336 (486)
Q Consensus       271 ~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~p~~  336 (486)
                      +.+...+...+.+.+.+.++..|.+++. ++|++|..   ++   +|++.+|+++.+|.||+.+.+
T Consensus       166 v~~v~~~~~~~~~~~~~~l~~~gv~i~~-~~v~~i~~---~~---~v~~~~g~~~~~D~vi~a~G~  224 (297)
T 3fbs_A          166 TTFFTNGIVEPDADQHALLAARGVRVET-TRIREIAG---HA---DVVLADGRSIALAGLFTQPKL  224 (297)
T ss_dssp             EEEECTTTCCCCHHHHHHHHHTTCEEEC-SCEEEEET---TE---EEEETTSCEEEESEEEECCEE
T ss_pred             EEEEECCCCCCCHHHHHHHHHCCcEEEc-ceeeeeec---CC---eEEeCCCCEEEEEEEEEccCc
Confidence            4444444446667777888899999985 89998853   22   677899999999999965443

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.02  E-value=3.4e-06  Score=87.06  Aligned_cols=42  Identities=12%  Similarity=0.279  Sum_probs=39.5

Q ss_pred             ccEEEECCChhHHHHHHHHhh---CCCc---EEEEccCCCCCCCcccc
Q 011414           23 FDLIVIGTGLPESVISAAASA---SGKS---VLHLDPNPFYGSHFSSL   64 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~---~G~~---VlvlE~~~~~GG~~~s~   64 (486)
                      +||+|||||.+||+||..|++   .|.+   |+++|+++.+||.|...
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~   50 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYT   50 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCC
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecC
Confidence            699999999999999999999   9999   99999999999988753

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.02  E-value=2.8e-06  Score=88.46  Aligned_cols=43  Identities=14%  Similarity=0.179  Sum_probs=39.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s   63 (486)
                      ...+||||||+|++|++||..|++. ++|+|+|+++++||.+..
T Consensus       106 ~~~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~  148 (493)
T 1y56_A          106 RVVVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWL  148 (493)
T ss_dssp             EEEESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGG
T ss_pred             cccCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeec
Confidence            3468999999999999999999999 999999999999998764

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.01  E-value=2e-06  Score=89.53  Aligned_cols=53  Identities=9%  Similarity=0.156  Sum_probs=43.7

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~  333 (486)
                      .++.+.+.+.++..|.++++++.|++|..+  ++..+.|++++|+++.||.||+.
T Consensus       235 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~--~~~~~~v~~~~G~~i~~D~vv~a  287 (495)
T 2wpf_A          235 ETIREEVTKQLTANGIEIMTNENPAKVSLN--TDGSKHVTFESGKTLDVDVVMMA  287 (495)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEEC--TTSCEEEEETTSCEEEESEEEEC
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEc--CCceEEEEECCCcEEEcCEEEEC
Confidence            367888888899999999999999999765  33335788889999999999954

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=98.00  E-value=3.1e-06  Score=89.80  Aligned_cols=38  Identities=34%  Similarity=0.497  Sum_probs=34.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC-CCC
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP-FYG   58 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~-~~G   58 (486)
                      .+|||||||||++|+.||..|++.|.+|+|+|++. .+|
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG   65 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLG   65 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTT
T ss_pred             CcCCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccc
Confidence            56999999999999999999999999999999984 444

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=98.00  E-value=4.5e-06  Score=87.83  Aligned_cols=52  Identities=13%  Similarity=0.178  Sum_probs=43.9

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~  332 (486)
                      ..+.+.|.+.+...|++++.+ .|++|..++ ++.+++|++.+|++++||.||.
T Consensus       165 ~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~-~g~~~~v~~~~g~~i~ad~vV~  216 (538)
T 2aqj_A          165 HLVADFLKRWAVERGVNRVVD-EVVDVRLNN-RGYISNLLTKEGRTLEADLFID  216 (538)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEC-CEEEEEECT-TSCEEEEEETTSCEECCSEEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEEe-eEeEEEEcC-CCcEEEEEECCCcEEEeCEEEE
Confidence            578888888888899999999 899998752 5666788888898999999984

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=98.00  E-value=8.5e-06  Score=87.53  Aligned_cols=38  Identities=13%  Similarity=0.181  Sum_probs=35.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhh-CCCcEEEEccCCCCC
Q 011414           21 TAFDLIVIGTGLPESVISAAASA-SGKSVLHLDPNPFYG   58 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~-~G~~VlvlE~~~~~G   58 (486)
                      .++||||||||++||++|+.|++ .|.+|+|+||++..+
T Consensus        31 ~~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~   69 (639)
T 2dkh_A           31 SQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPM   69 (639)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCC
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCC
Confidence            46899999999999999999999 999999999998764

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.99  E-value=2.2e-06  Score=88.34  Aligned_cols=42  Identities=19%  Similarity=0.233  Sum_probs=38.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s   63 (486)
                      .++||||||||.+|++||..|++.|++|+++|+ +.+||.|..
T Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~-~~~GG~~~~   45 (458)
T 1lvl_A            4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEG-QALGGTCLN   45 (458)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTCCEEEECS-SCTTHHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEcc-CCCCCcCCC
Confidence            468999999999999999999999999999999 789998764

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.99  E-value=2.6e-06  Score=87.72  Aligned_cols=41  Identities=20%  Similarity=0.258  Sum_probs=37.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s   63 (486)
                      ++||||||||.+|++||..|++.|++|+++|++ .+||.|..
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~gG~~~~   43 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVCLN   43 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC-CCCCcCcC
Confidence            589999999999999999999999999999998 88987643

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=97.99  E-value=5.8e-06  Score=82.00  Aligned_cols=40  Identities=20%  Similarity=0.121  Sum_probs=36.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (486)
                      +||||||+|++|+.||..|+++|++|+++|++...+.-.+
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~~~tp~h   41 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPKRMTPAH   41 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTTSCCSSC
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccCCcCCccc
Confidence            6999999999999999999999999999999886655544

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=97.99  E-value=3.7e-06  Score=84.37  Aligned_cols=35  Identities=17%  Similarity=0.209  Sum_probs=33.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFY   57 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~   57 (486)
                      .||||||||++||++|..|+++  |++|+|+|+++.+
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~   37 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ   37 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCC
Confidence            4899999999999999999999  9999999999876

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.98  E-value=6.1e-06  Score=89.22  Aligned_cols=43  Identities=26%  Similarity=0.387  Sum_probs=39.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (486)
                      ...+||||||||.+|+.||..|++.|++|+++|+++++||.+.
T Consensus       371 ~~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~  413 (671)
T 1ps9_A          371 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFN  413 (671)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHH
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeee
Confidence            3468999999999999999999999999999999999999864

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=97.97  E-value=4.7e-06  Score=80.76  Aligned_cols=39  Identities=15%  Similarity=0.382  Sum_probs=35.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (486)
                      +|||+|||+|++|+++|..|++.|++|+++|+  ++||.+.
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~--~~gG~~~   39 (310)
T 1fl2_A            1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGE--RFGGQIL   39 (310)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECS--STTGGGG
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeC--CCCceec
Confidence            48999999999999999999999999999986  5788765

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=97.97  E-value=2.6e-06  Score=90.76  Aligned_cols=52  Identities=15%  Similarity=0.201  Sum_probs=43.5

Q ss_pred             chHHHHHHHHHHHcC-cEEEeCCceeEEEEecCCCeEEEEEe---CCCc--EEEcCEEEE
Q 011414          279 GELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (486)
Q Consensus       279 ~~L~qal~r~~~~~G-g~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~--~i~A~~VI~  332 (486)
                      ..|.++|.+.+...| .+|++++.|.+|..+  +++++||..   .+|+  +++|+.||+
T Consensus       134 ~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~~--~g~v~Gv~~~~~~~G~~~~i~A~~VVl  191 (602)
T 1kf6_A          134 FHMLHTLFQTSLQFPQIQRFDEHFVLDILVD--DGHVRGLVAMNMMEGTLVQIRANAVVM  191 (602)
T ss_dssp             HHHHHHHHHHHTTCTTEEEEETEEEEEEEEE--TTEEEEEEEEETTTTEEEEEECSCEEE
T ss_pred             HHHHHHHHHHHHhCCCcEEEeCCEEEEEEEe--CCEEEEEEEEEcCCCcEEEEEcCeEEE
Confidence            478899988888889 999999999999887  678878753   5676  689999884

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=97.97  E-value=4.8e-06  Score=87.80  Aligned_cols=38  Identities=29%  Similarity=0.434  Sum_probs=34.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (486)
                      ..+||+||||+|.+|+++|.+|+++|++|+|||+....
T Consensus         5 ~~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~~   42 (546)
T 1kdg_A            5 ATPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPS   42 (546)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC
T ss_pred             CCceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            45799999999999999999999999999999998753

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=97.96  E-value=2.4e-06  Score=89.09  Aligned_cols=50  Identities=10%  Similarity=0.123  Sum_probs=42.3

Q ss_pred             hHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE
Q 011414          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (486)
Q Consensus       280 ~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~  332 (486)
                      ++.+.+.+.++..|.+++++++|++|..+  +++ +.|++.+|+++.||.||+
T Consensus       224 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~~--~~~-v~v~~~~g~~i~aD~Vv~  273 (499)
T 1xdi_A          224 DAALVLEESFAERGVRLFKNARAASVTRT--GAG-VLVTMTDGRTVEGSHALM  273 (499)
T ss_dssp             HHHHHHHHHHHHTTCEEETTCCEEEEEEC--SSS-EEEEETTSCEEEESEEEE
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEe--CCE-EEEEECCCcEEEcCEEEE
Confidence            67888888899999999999999999865  444 467778899999999985

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=97.96  E-value=3.7e-06  Score=85.86  Aligned_cols=33  Identities=9%  Similarity=0.050  Sum_probs=32.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      +||+|||||++||++|+.|+++|++|+|+|+++
T Consensus        23 ~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           23 KRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            799999999999999999999999999999986

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.95  E-value=3.6e-06  Score=87.73  Aligned_cols=54  Identities=7%  Similarity=0.003  Sum_probs=43.7

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcE-EEcCEEEECC
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQD-ILSHKLVLDP  334 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~-i~A~~VI~~p  334 (486)
                      .++.+.+.+.++..|.++++++.|++|..+. ++. +.|++++|++ +.||.||+..
T Consensus       217 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~-~~~-~~v~~~~g~~~~~~D~vi~a~  271 (500)
T 1onf_A          217 ESVINVLENDMKKNNINIVTFADVVEIKKVS-DKN-LSIHLSDGRIYEHFDHVIYCV  271 (500)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEESS-TTC-EEEEETTSCEEEEESEEEECC
T ss_pred             hhhHHHHHHHHHhCCCEEEECCEEEEEEEcC-Cce-EEEEECCCcEEEECCEEEECC
Confidence            4778888888999999999999999997641 333 4677889988 9999999643

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=97.95  E-value=3.9e-06  Score=88.09  Aligned_cols=51  Identities=8%  Similarity=-0.002  Sum_probs=44.1

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~  332 (486)
                      .++++.+.+..+..|.++++++.|+++...  ++. +.|.+.+++++.+|.|++
T Consensus       263 ~ei~~~l~~~l~~~gi~~~~~~~v~~~~~~--~~~-~~v~~~~~~~~~~D~vLv  313 (542)
T 4b1b_A          263 QQCAVKVKLYMEEQGVMFKNGILPKKLTKM--DDK-ILVEFSDKTSELYDTVLY  313 (542)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETCCEEEEEEE--TTE-EEEEETTSCEEEESEEEE
T ss_pred             hhHHHHHHHHHHhhcceeecceEEEEEEec--CCe-EEEEEcCCCeEEEEEEEE
Confidence            578899999999999999999999999876  454 467788999999999885

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=97.94  E-value=5.4e-06  Score=87.69  Aligned_cols=37  Identities=16%  Similarity=0.353  Sum_probs=34.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCC-CcEEEEccCCC
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPF   56 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G-~~VlvlE~~~~   56 (486)
                      ..+||+||||+|.+||++|.+|++.| .+|+||||...
T Consensus         4 ~~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~   41 (577)
T 3q9t_A            4 GSHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG   41 (577)
T ss_dssp             TCEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred             CCcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            45799999999999999999999998 79999999765

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=97.94  E-value=4.6e-06  Score=87.39  Aligned_cols=36  Identities=22%  Similarity=0.406  Sum_probs=32.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhh-CCCcEEEEccCCC
Q 011414           21 TAFDLIVIGTGLPESVISAAASA-SGKSVLHLDPNPF   56 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~-~G~~VlvlE~~~~   56 (486)
                      .+||+||||+|.+|+++|.+|++ .|++|||||+...
T Consensus        16 ~~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~   52 (526)
T 3t37_A           16 PNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEE   52 (526)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBC
T ss_pred             CCeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCC
Confidence            37999999999999999999998 6899999999644

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=97.94  E-value=6.4e-06  Score=85.18  Aligned_cols=51  Identities=22%  Similarity=0.160  Sum_probs=40.9

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeC-CCcEEEcCEEEE
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQDILSHKLVL  332 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~-~G~~i~A~~VI~  332 (486)
                      .++.++|.+.++..|.+++.+++| +|..+  ++++++|.+. ++.++.||.||+
T Consensus       119 ~~l~~~L~~~~~~~gv~i~~~~~v-~l~~~--~~~v~Gv~v~~~~g~~~a~~VVl  170 (472)
T 2e5v_A          119 REIFNFLLKLAREEGIPIIEDRLV-EIRVK--DGKVTGFVTEKRGLVEDVDKLVL  170 (472)
T ss_dssp             HHHHHHHHHHHHHTTCCEECCCEE-EEEEE--TTEEEEEEETTTEEECCCSEEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEECcEE-EEEEe--CCEEEEEEEEeCCCeEEeeeEEE
Confidence            478888988888889999999999 99877  6788787653 334578999884

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=97.93  E-value=4.9e-06  Score=85.66  Aligned_cols=41  Identities=29%  Similarity=0.310  Sum_probs=37.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCC-----CcEEEEccCCCCCCCc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASG-----KSVLHLDPNPFYGSHF   61 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G-----~~VlvlE~~~~~GG~~   61 (486)
                      ..+||||||+|++||++|..|++.|     .+|+++|+++.+|...
T Consensus        29 ~~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~   74 (463)
T 3s5w_A           29 VVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHG   74 (463)
T ss_dssp             CEESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSG
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcC
Confidence            4689999999999999999999999     9999999999998544

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=97.91  E-value=7.4e-06  Score=72.79  Aligned_cols=33  Identities=30%  Similarity=0.412  Sum_probs=32.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      +||+|||+|++|+.+|..|++.|++|+++|+++
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~   34 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGR   34 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            799999999999999999999999999999987

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=97.89  E-value=8e-06  Score=86.36  Aligned_cols=38  Identities=24%  Similarity=0.375  Sum_probs=34.4

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhC-CCcEEEEccCC
Q 011414           18 IEPTAFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNP   55 (486)
Q Consensus        18 ~~~~~~DViIIGaGl~GL~aA~~La~~-G~~VlvlE~~~   55 (486)
                      +...+||+||||||.+||++|.+|++. |++|+|||+..
T Consensus        15 ~~~~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~   53 (583)
T 3qvp_A           15 VSGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   53 (583)
T ss_dssp             TTTCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred             cCCCCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence            445689999999999999999999975 89999999977

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=97.88  E-value=6.8e-06  Score=88.32  Aligned_cols=52  Identities=15%  Similarity=0.161  Sum_probs=41.2

Q ss_pred             chHHHHHHHHHHHc-Cc-EEEeCCceeEEEEecCCC---eEEEEEe---CCCc--EEEcCEEEE
Q 011414          279 GELPQAFCRRAAVK-GC-LYVLRMPVISLLTDQNSG---SYKGVRL---ASGQ--DILSHKLVL  332 (486)
Q Consensus       279 ~~L~qal~r~~~~~-Gg-~i~l~~~V~~I~~~~~~g---~~~gV~~---~~G~--~i~A~~VI~  332 (486)
                      ..+...|.+.++.. |. +|+.++.|.+|..+  ++   +++||..   .+|+  .++|+.||+
T Consensus       151 ~~~~~~l~~~~~~~~gv~~i~~~~~v~~L~~~--~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVl  212 (643)
T 1jnr_A          151 ESYKPIIAEAAKMAVGEENIYERVFIFELLKD--NNDPNAVAGAVGFSVREPKFYVFKAKAVIL  212 (643)
T ss_dssp             TTHHHHHHHHHHHHHCGGGEECSEEEEEEEEC--TTCTTBEEEEEEEESSSSCEEEEECSEEEE
T ss_pred             HHHHHHHHHHHHhcCCCcEEEecCEEEEEEEc--CCccceeEEEEEEEecCCcEEEEEcCEEEE
Confidence            35677777777777 99 99999999999886  55   8888764   5666  589999884

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=97.86  E-value=1e-05  Score=85.31  Aligned_cols=52  Identities=25%  Similarity=0.205  Sum_probs=44.4

Q ss_pred             chHHHHHHHHHHHc-CcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE
Q 011414          279 GELPQAFCRRAAVK-GCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (486)
Q Consensus       279 ~~L~qal~r~~~~~-Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~  332 (486)
                      ..+.+.|.+.++.. |++++++ .|++|..++ ++.+++|++.+|++++||.||.
T Consensus       194 ~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~-~g~~~~v~~~~G~~i~ad~vI~  246 (550)
T 2e4g_A          194 HLVADFLRRFATEKLGVRHVED-RVEHVQRDA-NGNIESVRTATGRVFDADLFVD  246 (550)
T ss_dssp             HHHHHHHHHHHHHHSCCEEEEC-CEEEEEECT-TSCEEEEEETTSCEEECSEEEE
T ss_pred             HHHHHHHHHHHHhcCCcEEEEC-eEeEEEEcC-CCCEEEEEECCCCEEECCEEEE
Confidence            46888898988888 9999999 999998752 5667789888998999999994

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.85  E-value=7.7e-06  Score=91.86  Aligned_cols=42  Identities=29%  Similarity=0.377  Sum_probs=40.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (486)
                      ..+||||||+|.+|++||..|++.|++|+|+|+++++||.+.
T Consensus       127 ~~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~  168 (965)
T 2gag_A          127 VHTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLL  168 (965)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGG
T ss_pred             cCCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceec
Confidence            468999999999999999999999999999999999999887

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=97.84  E-value=8e-06  Score=85.68  Aligned_cols=52  Identities=12%  Similarity=0.193  Sum_probs=42.7

Q ss_pred             chHHHHHHHHHHH-cCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE
Q 011414          279 GELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (486)
Q Consensus       279 ~~L~qal~r~~~~-~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~  332 (486)
                      ..+.+.|.+.++. .|++++.+ .|++|..+. ++.+++|++.+|++++||.||.
T Consensus       175 ~~l~~~L~~~a~~~~Gv~i~~~-~v~~i~~~~-~g~~~~v~~~~g~~i~ad~vV~  227 (526)
T 2pyx_A          175 AKFSQLLTEHCTQKLGVTHIRD-HVSQIINNQ-HGDIEKLITKQNGEISGQLFID  227 (526)
T ss_dssp             HHHHHHHHHHHHHTSCCEEEEC-CEEEEEECT-TSCEEEEEESSSCEEECSEEEE
T ss_pred             HHHHHHHHHHHHhcCCCEEEEe-EEEEEEecC-CCcEEEEEECCCCEEEcCEEEE
Confidence            4678888888888 89999999 599998752 5666788888888899999994

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=97.84  E-value=7e-06  Score=86.29  Aligned_cols=38  Identities=21%  Similarity=0.383  Sum_probs=34.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      .+||+||||+|.+|+++|.+|++ |++|+|||+....++
T Consensus        25 ~~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~~~~   62 (536)
T 1ju2_A           25 GSYDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSLPTA   62 (536)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBCGGG
T ss_pred             CcccEEEECccHHHHHHHHHHhc-CCcEEEEecCCCcCC
Confidence            56999999999999999999999 999999999876543

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=97.83  E-value=1.2e-05  Score=84.23  Aligned_cols=41  Identities=15%  Similarity=0.356  Sum_probs=37.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (486)
                      +..+||+|||||.+|++||.+|++.|++|+++|+  ++||.+.
T Consensus       210 ~~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~--~~GG~~~  250 (521)
T 1hyu_A          210 RDAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGE--RFGGQVL  250 (521)
T ss_dssp             SCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECS--STTGGGT
T ss_pred             cCcccEEEECCcHHHHHHHHHHHhCCCeEEEEEC--CCCCccc
Confidence            3578999999999999999999999999999996  5788765

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.80  E-value=8.9e-06  Score=83.71  Aligned_cols=43  Identities=14%  Similarity=0.121  Sum_probs=38.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhh-C------CCcEEEEccCCCCCCCcc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASA-S------GKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~-~------G~~VlvlE~~~~~GG~~~   62 (486)
                      |..+||+|||+|.+|+.||..|++ .      |++|+++|+++.+||.+.
T Consensus         1 m~~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~   50 (456)
T 1lqt_A            1 MRPYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVR   50 (456)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHH
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccc
Confidence            346899999999999999999999 7      999999999999998764

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=97.78  E-value=1.3e-05  Score=86.52  Aligned_cols=44  Identities=16%  Similarity=0.234  Sum_probs=37.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhh-----CCCcEEEEccCCCC--CCCcccc
Q 011414           21 TAFDLIVIGTGLPESVISAAASA-----SGKSVLHLDPNPFY--GSHFSSL   64 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~-----~G~~VlvlE~~~~~--GG~~~s~   64 (486)
                      .++||+|||||++||++|+.|++     .|.+|+|+||++..  .|+...+
T Consensus         7 ~~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~~~~gra~~l   57 (665)
T 1pn0_A            7 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGL   57 (665)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCCEE
T ss_pred             CCCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCCCCCCCceeEE
Confidence            46899999999999999999999     99999999998764  4554444

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=97.77  E-value=1.4e-05  Score=81.92  Aligned_cols=42  Identities=10%  Similarity=0.097  Sum_probs=35.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCCCCCc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHF   61 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~GG~~   61 (486)
                      |+.+||||||+|++|++||..|++.  |++|+++|++++.|+..
T Consensus         1 M~~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~   44 (449)
T 3kd9_A            1 MSLKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAP   44 (449)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC---
T ss_pred             CCcCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCC
Confidence            3458999999999999999999998  88999999999887543

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=97.77  E-value=9.5e-06  Score=84.70  Aligned_cols=52  Identities=21%  Similarity=0.230  Sum_probs=44.2

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~  332 (486)
                      ..+.+.|.+.+...|++++.+ .|++|..++ ++.+++|++.+|++++||.||.
T Consensus       173 ~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~-~~~~~~v~~~~g~~~~ad~vV~  224 (511)
T 2weu_A          173 DEVARYLSEYAIARGVRHVVD-DVQHVGQDE-RGWISGVHTKQHGEISGDLFVD  224 (511)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEC-CEEEEEECT-TSCEEEEEESSSCEEECSEEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEEC-eEeEEEEcC-CCCEEEEEECCCCEEEcCEEEE
Confidence            478888888888899999999 999998752 5667789888998999999994

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=97.76  E-value=1.4e-05  Score=82.83  Aligned_cols=51  Identities=8%  Similarity=0.090  Sum_probs=40.7

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~  333 (486)
                      .++.+.+.+.++..|.++++++.|++|..   ++++..|.+ +++++.||.||+.
T Consensus       227 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~---~~~v~~v~~-~~~~i~~D~vi~a  277 (480)
T 3cgb_A          227 GDMAEYIYKEADKHHIEILTNENVKAFKG---NERVEAVET-DKGTYKADLVLVS  277 (480)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEE---SSBEEEEEE-TTEEEECSEEEEC
T ss_pred             HHHHHHHHHHHHHcCcEEEcCCEEEEEEc---CCcEEEEEE-CCCEEEcCEEEEC
Confidence            46778888888999999999999999964   345556765 4568999999853

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=97.76  E-value=1.3e-05  Score=82.91  Aligned_cols=54  Identities=11%  Similarity=0.132  Sum_probs=44.9

Q ss_pred             cchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEECC
Q 011414          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP  334 (486)
Q Consensus       278 ~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~p  334 (486)
                      ..++.+.+.+.++..|.+++++++|++|..+  ++++ .|++.+|+++.||.||+..
T Consensus       201 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~--~~~v-~v~~~~g~~i~aD~Vv~a~  254 (472)
T 3iwa_A          201 SKSLSQMLRHDLEKNDVVVHTGEKVVRLEGE--NGKV-ARVITDKRTLDADLVILAA  254 (472)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSCCEEEEEES--SSBE-EEEEESSCEEECSEEEECS
T ss_pred             CHHHHHHHHHHHHhcCCEEEeCCEEEEEEcc--CCeE-EEEEeCCCEEEcCEEEECC
Confidence            4578888989999999999999999999764  5554 4777899999999999643

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.75  E-value=1.4e-05  Score=85.25  Aligned_cols=35  Identities=31%  Similarity=0.334  Sum_probs=32.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (486)
                      ...|||+|||+|.+|++||..|++.|++|+++|+.
T Consensus       105 ~~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~  139 (598)
T 2x8g_A          105 KYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYV  139 (598)
T ss_dssp             SSSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             cccccEEEECCCccHHHHHHHHHhCCCeEEEEecc
Confidence            45699999999999999999999999999999983

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.74  E-value=1.8e-05  Score=89.50  Aligned_cols=41  Identities=10%  Similarity=0.200  Sum_probs=38.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCC-cEEEEccCCCCCCCc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFYGSHF   61 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~-~VlvlE~~~~~GG~~   61 (486)
                      +.+||+|||+|.+|++||..|++.|+ +|+|+|+++++||..
T Consensus       186 ~~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~  227 (1025)
T 1gte_A          186 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLS  227 (1025)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHH
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCccc
Confidence            47899999999999999999999999 799999999999975

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.72  E-value=1.6e-05  Score=81.94  Aligned_cols=42  Identities=10%  Similarity=-0.034  Sum_probs=38.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCC--CcEEEEccCCCCCCCcc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G--~~VlvlE~~~~~GG~~~   62 (486)
                      ..+||+|||+|++|+.+|..|++.|  ++|+++|+++++||.+.
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~   48 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVR   48 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHH
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceee
Confidence            4579999999999999999999999  99999999999998764

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=97.71  E-value=2.1e-05  Score=83.67  Aligned_cols=50  Identities=24%  Similarity=0.195  Sum_probs=41.9

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~  333 (486)
                      .++.+.+.+.++..|.+++++++|++|..+  ++   +|++.+|+++.||.||+.
T Consensus       228 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~--~~---~v~~~~g~~i~~D~Vi~a  277 (588)
T 3ics_A          228 YEMAAYVHEHMKNHDVELVFEDGVDALEEN--GA---VVRLKSGSVIQTDMLILA  277 (588)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEGG--GT---EEEETTSCEEECSEEEEC
T ss_pred             HHHHHHHHHHHHHcCCEEEECCeEEEEecC--CC---EEEECCCCEEEcCEEEEc
Confidence            477888888899999999999999999653  33   467789999999999964

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=97.70  E-value=2.3e-05  Score=81.68  Aligned_cols=39  Identities=23%  Similarity=0.335  Sum_probs=35.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (486)
                      +.+||+||||+|.+|+++|.+|++.|++|+|+|+....+
T Consensus         3 ~~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~~   41 (504)
T 1n4w_A            3 GGYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWN   41 (504)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence            457999999999999999999999999999999998765

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=97.66  E-value=2.2e-05  Score=82.77  Aligned_cols=38  Identities=29%  Similarity=0.426  Sum_probs=34.7

Q ss_pred             cccEEEECCChhHHHHHHHHhh-CCCcEEEEccCCCCCC
Q 011414           22 AFDLIVIGTGLPESVISAAASA-SGKSVLHLDPNPFYGS   59 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~-~G~~VlvlE~~~~~GG   59 (486)
                      +||+||||+|.+|+++|.+|++ .|++|+|||+....++
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~~~   40 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDEN   40 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCCTT
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcccC
Confidence            5999999999999999999999 7999999999877643

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=97.63  E-value=2.9e-05  Score=79.78  Aligned_cols=51  Identities=6%  Similarity=0.134  Sum_probs=42.4

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~  333 (486)
                      .++.+.+.+.++..|.+++++++|++|..+  ++++ .|++.+| ++.||.||+.
T Consensus       189 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~--~~~v-~v~~~~g-~i~aD~Vv~A  239 (452)
T 3oc4_A          189 KEMVAEVQKSLEKQAVIFHFEETVLGIEET--ANGI-VLETSEQ-EISCDSGIFA  239 (452)
T ss_dssp             HHHHHHHHHHHHTTTEEEEETCCEEEEEEC--SSCE-EEEESSC-EEEESEEEEC
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEEcc--CCeE-EEEECCC-EEEeCEEEEC
Confidence            577888888899999999999999999865  5555 7877666 8999999853

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=97.60  E-value=5.2e-05  Score=79.05  Aligned_cols=38  Identities=16%  Similarity=0.236  Sum_probs=35.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (486)
                      +.+||+||||+|.+|+++|.+|++.|++|+|||+....
T Consensus         9 ~~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~   46 (507)
T 1coy_A            9 GDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSW   46 (507)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence            35799999999999999999999999999999998654

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.60  E-value=3.5e-05  Score=79.12  Aligned_cols=53  Identities=19%  Similarity=0.205  Sum_probs=43.9

Q ss_pred             cchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC
Q 011414          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (486)
Q Consensus       278 ~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~  333 (486)
                      ..++.+.+.+.++..|.+++++++|++|..+  ++++..|.+ +|+++.||.||+.
T Consensus       190 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~--~~~v~~v~~-~g~~i~~D~vv~a  242 (452)
T 2cdu_A          190 DKEFTDILAKDYEAHGVNLVLGSKVAAFEEV--DDEIITKTL-DGKEIKSDIAILC  242 (452)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEESSCEEEEEEE--TTEEEEEET-TSCEEEESEEEEC
T ss_pred             hhhHHHHHHHHHHHCCCEEEcCCeeEEEEcC--CCeEEEEEe-CCCEEECCEEEEC
Confidence            3578888889999999999999999999865  566656764 8889999999854

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=97.59  E-value=4.1e-05  Score=81.31  Aligned_cols=38  Identities=21%  Similarity=0.366  Sum_probs=35.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhh-CCCcEEEEccCCCC
Q 011414           20 PTAFDLIVIGTGLPESVISAAASA-SGKSVLHLDPNPFY   57 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~-~G~~VlvlE~~~~~   57 (486)
                      +.+||+||||+|.+|+++|.+|++ .|++|+|||+....
T Consensus        22 ~~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~   60 (587)
T 1gpe_A           22 GKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE   60 (587)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred             cccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCcc
Confidence            467999999999999999999999 79999999998654

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=97.59  E-value=5.3e-05  Score=77.27  Aligned_cols=54  Identities=9%  Similarity=0.025  Sum_probs=45.7

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEE--ecCCCeEEEEEeCCCcEEEcCEEEECC
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLT--DQNSGSYKGVRLASGQDILSHKLVLDP  334 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~--~~~~g~~~gV~~~~G~~i~A~~VI~~p  334 (486)
                      .++.+.+.+.++..|.++++++.|++|..  +  ++++.+|++.+|+++.||.||+..
T Consensus       191 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~--~~~v~~v~~~~G~~i~~D~Vv~a~  246 (431)
T 1q1r_A          191 PPVSAFYEHLHREAGVDIRTGTQVCGFEMSTD--QQKVTAVLCEDGTRLPADLVIAGI  246 (431)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEEECTT--TCCEEEEEETTSCEEECSEEEECC
T ss_pred             HHHHHHHHHHHHhCCeEEEeCCEEEEEEeccC--CCcEEEEEeCCCCEEEcCEEEECC
Confidence            46778888888999999999999999976  3  566678888999999999999643

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=97.57  E-value=5.3e-05  Score=79.70  Aligned_cols=40  Identities=28%  Similarity=0.382  Sum_probs=36.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhC-CCcEEEEccCCCCCC
Q 011414           20 PTAFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFYGS   59 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~-G~~VlvlE~~~~~GG   59 (486)
                      ..+||+||||+|.+|+++|.+|+++ |++|+|||+.....+
T Consensus        11 ~~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~~~   51 (546)
T 2jbv_A           11 DREFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRG   51 (546)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCCTT
T ss_pred             cCcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcCCC
Confidence            3579999999999999999999998 999999999877643

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=97.54  E-value=5.4e-05  Score=75.87  Aligned_cols=53  Identities=17%  Similarity=0.078  Sum_probs=44.2

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEECC
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP  334 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~p  334 (486)
                      .++.+.+.+.++..|.++++++.|++|..+  ++. +.|++++|+++.||.||+..
T Consensus       187 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~--~~~-~~v~~~~g~~i~~d~vv~a~  239 (384)
T 2v3a_A          187 PAAAKAVQAGLEGLGVRFHLGPVLASLKKA--GEG-LEAHLSDGEVIPCDLVVSAV  239 (384)
T ss_dssp             HHHHHHHHHHHHTTTCEEEESCCEEEEEEE--TTE-EEEEETTSCEEEESEEEECS
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEEec--CCE-EEEEECCCCEEECCEEEECc
Confidence            467888888888999999999999999875  443 57888899999999999643

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=97.52  E-value=3.2e-05  Score=78.19  Aligned_cols=51  Identities=14%  Similarity=0.124  Sum_probs=41.5

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEECCCC
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSF  336 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~p~~  336 (486)
                      .++.+.+.+.++..|.++++++.|++|.    .+   +|++++|+++.||.||+.+..
T Consensus       218 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~----~~---~v~~~~g~~~~~D~vi~a~G~  268 (409)
T 3h8l_A          218 PNSRKAVASIYNQLGIKLVHNFKIKEIR----EH---EIVDEKGNTIPADITILLPPY  268 (409)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEC----SS---EEEETTSCEEECSEEEEECCE
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCceEEEC----CC---eEEECCCCEEeeeEEEECCCC
Confidence            4678888888999999999999999984    22   366789999999999865443

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.52  E-value=5.4e-05  Score=78.65  Aligned_cols=53  Identities=17%  Similarity=0.157  Sum_probs=44.1

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEECC
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP  334 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~p  334 (486)
                      .++.+.+.+.++..|.++++++.|++|..+  +++ +.|++++|+++.||.||+..
T Consensus       226 ~~~~~~~~~~l~~~GV~v~~~~~V~~i~~~--~~~-~~v~l~dG~~i~aD~Vv~a~  278 (493)
T 1m6i_A          226 EYLSNWTMEKVRREGVKVMPNAIVQSVGVS--SGK-LLIKLKDGRKVETDHIVAAV  278 (493)
T ss_dssp             HHHHHHHHHHHHTTTCEEECSCCEEEEEEE--TTE-EEEEETTSCEEEESEEEECC
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEec--CCe-EEEEECCCCEEECCEEEECC
Confidence            357788888889999999999999999765  454 47888999999999999643

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=97.50  E-value=5.4e-05  Score=77.56  Aligned_cols=51  Identities=12%  Similarity=0.065  Sum_probs=40.4

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~  333 (486)
                      .++.+.+.+.++..|.++++++.|++|..+   ++++.|.+ +|+++.||.||+.
T Consensus       191 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~---~~v~~v~~-~~~~i~~d~vi~a  241 (447)
T 1nhp_A          191 KEFTDVLTEEMEANNITIATGETVERYEGD---GRVQKVVT-DKNAYDADLVVVA  241 (447)
T ss_dssp             HHHHHHHHHHHHTTTEEEEESCCEEEEECS---SBCCEEEE-SSCEEECSEEEEC
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEcc---CcEEEEEE-CCCEEECCEEEEC
Confidence            467888888888999999999999998643   44445665 6778999999854

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=97.50  E-value=5.2e-05  Score=78.72  Aligned_cols=51  Identities=10%  Similarity=0.155  Sum_probs=41.0

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~  333 (486)
                      .++.+.+.+.++..|.++++++.|++|..   ++++..|.+ +|+++.||.||+.
T Consensus       236 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~---~~~v~~v~~-~g~~i~~D~Vi~a  286 (490)
T 2bc0_A          236 RDLTDLMAKNMEEHGIQLAFGETVKEVAG---NGKVEKIIT-DKNEYDVDMVILA  286 (490)
T ss_dssp             HHHHHHHHHHHHTTTCEEEETCCEEEEEC---SSSCCEEEE-SSCEEECSEEEEC
T ss_pred             HHHHHHHHHHHHhCCeEEEeCCEEEEEEc---CCcEEEEEE-CCcEEECCEEEEC
Confidence            46778888888999999999999999964   344445665 7889999999854

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.48  E-value=7.2e-05  Score=75.69  Aligned_cols=49  Identities=22%  Similarity=0.243  Sum_probs=41.1

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEECC
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP  334 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~p  334 (486)
                      .++.+.+.+.++..|.++++++.|++|. +  +    +|++++|+++.||.||+..
T Consensus       187 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~-~--~----~v~~~~g~~i~~D~vi~a~  235 (408)
T 2gqw_A          187 ATLADFVARYHAAQGVDLRFERSVTGSV-D--G----VVLLDDGTRIAADMVVVGI  235 (408)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEE-T--T----EEEETTSCEEECSEEEECS
T ss_pred             HHHHHHHHHHHHHcCcEEEeCCEEEEEE-C--C----EEEECCCCEEEcCEEEECc
Confidence            4677888888899999999999999996 3  3    5677899999999999643

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=97.42  E-value=7.6e-05  Score=76.23  Aligned_cols=36  Identities=17%  Similarity=0.382  Sum_probs=33.8

Q ss_pred             cccEEEECCChhHHHHHHHHhh---CCCcEEEEccCCCC
Q 011414           22 AFDLIVIGTGLPESVISAAASA---SGKSVLHLDPNPFY   57 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~---~G~~VlvlE~~~~~   57 (486)
                      ..||||||||++|+++|..|++   .|++|+|+|+++++
T Consensus         4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~   42 (437)
T 3sx6_A            4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYF   42 (437)
T ss_dssp             SCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEE
T ss_pred             CCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCC
Confidence            4699999999999999999999   89999999999865

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.40  E-value=9.9e-05  Score=73.57  Aligned_cols=47  Identities=19%  Similarity=0.176  Sum_probs=38.3

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~  333 (486)
                      .++.+.+.+.++..|.++++++.|++|.    .+   +|++++|+ +.||.||+.
T Consensus       183 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~----~~---~v~~~~g~-i~~D~vi~a  229 (367)
T 1xhc_A          183 EELSNMIKDMLEETGVKFFLNSELLEAN----EE---GVLTNSGF-IEGKVKICA  229 (367)
T ss_dssp             HHHHHHHHHHHHHTTEEEECSCCEEEEC----SS---EEEETTEE-EECSCEEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEE----ee---EEEECCCE-EEcCEEEEC
Confidence            3677888888899999999999999985    22   46678887 999999854

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=97.33  E-value=0.00015  Score=73.36  Aligned_cols=53  Identities=11%  Similarity=0.131  Sum_probs=44.2

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEECC
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP  334 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~p  334 (486)
                      .++.+.+.+.++..|.++++++.|++|..+   +++.+|++++|+++.||.||+..
T Consensus       185 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~---~~~~~v~~~dg~~i~aD~Vv~a~  237 (410)
T 3ef6_A          185 RRIGAWLRGLLTELGVQVELGTGVVGFSGE---GQLEQVMASDGRSFVADSALICV  237 (410)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEECS---SSCCEEEETTSCEEECSEEEECS
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEecc---CcEEEEEECCCCEEEcCEEEEee
Confidence            467788888889999999999999999753   35568889999999999999643

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=97.32  E-value=0.00012  Score=77.17  Aligned_cols=36  Identities=11%  Similarity=0.202  Sum_probs=34.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYG   58 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~G   58 (486)
                      .||+|||||++|++||..|++.  |++|+++|+++++|
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~   39 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVS   39 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCcc
Confidence            4899999999999999999998  89999999999986

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=97.25  E-value=8.1e-05  Score=77.48  Aligned_cols=44  Identities=16%  Similarity=0.135  Sum_probs=32.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s   63 (486)
                      .+.+||||||+|.+||++|++|.++|...+++|+.+..|+.+..
T Consensus        37 ~~i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~   80 (501)
T 4b63_A           37 DELHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKIC   80 (501)
T ss_dssp             TSCEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEE
T ss_pred             CCcCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCccee
Confidence            45689999999999999999999988776666666666665543

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=97.05  E-value=0.00033  Score=72.83  Aligned_cols=36  Identities=11%  Similarity=0.277  Sum_probs=33.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      .+..|||||||.+|+.+|..|++.|++|+++|++++
T Consensus        41 ~KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~   76 (502)
T 4g6h_A           41 DKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSY   76 (502)
T ss_dssp             SSCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSE
T ss_pred             CCCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCC
Confidence            456799999999999999999999999999999985

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=97.04  E-value=0.00048  Score=69.08  Aligned_cols=39  Identities=10%  Similarity=0.243  Sum_probs=35.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      +...|+|||||++|+.||..|++.|.+|+++|++++++.
T Consensus         8 ~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y   46 (385)
T 3klj_A            8 KSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPY   46 (385)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCB
T ss_pred             CCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCc
Confidence            456899999999999999999888999999999998773

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=97.00  E-value=0.00037  Score=70.01  Aligned_cols=37  Identities=19%  Similarity=0.316  Sum_probs=32.5

Q ss_pred             cEEEECCChhHHHHHHHHhhCC--CcEEEEccCCCCCCC
Q 011414           24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSH   60 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G--~~VlvlE~~~~~GG~   60 (486)
                      .|||||+|.+|++||.+|++.|  .+|+|+|+++++..+
T Consensus         4 kVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~   42 (401)
T 3vrd_B            4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTC   42 (401)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECS
T ss_pred             EEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCc
Confidence            6999999999999999999887  489999999875444

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=96.91  E-value=0.00054  Score=69.91  Aligned_cols=47  Identities=11%  Similarity=0.139  Sum_probs=39.5

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~  332 (486)
                      .++.+.+.+..+..|.++++++.|+++.    .+   .|++++|+++.||.||+
T Consensus       188 ~~~~~~~~~~l~~~gV~i~~~~~v~~~~----~~---~v~~~~g~~~~~D~vl~  234 (437)
T 4eqs_A          188 ADMNQPILDELDKREIPYRLNEEINAIN----GN---EITFKSGKVEHYDMIIE  234 (437)
T ss_dssp             GGGGHHHHHHHHHTTCCEEESCCEEEEE----TT---EEEETTSCEEECSEEEE
T ss_pred             chhHHHHHHHhhccceEEEeccEEEEec----CC---eeeecCCeEEeeeeEEE
Confidence            5777888888999999999999999873    23   36678999999999985

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=96.80  E-value=0.00069  Score=68.94  Aligned_cols=34  Identities=15%  Similarity=0.313  Sum_probs=31.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCC--CcEEEEccCCCC
Q 011414           24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNPFY   57 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G--~~VlvlE~~~~~   57 (486)
                      .|||||||.+|++||..|++.|  .+|+++|++++.
T Consensus         4 ~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~   39 (430)
T 3hyw_A            4 HVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYF   39 (430)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEE
T ss_pred             cEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCC
Confidence            6999999999999999999876  789999999864

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=95.70  E-value=0.01  Score=60.35  Aligned_cols=39  Identities=23%  Similarity=0.175  Sum_probs=35.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (486)
                      ..+|+|||+|..|+.+|..|++.|.+|+++|+++++..+
T Consensus       149 ~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~  187 (447)
T 1nhp_A          149 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGV  187 (447)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcccccc
Confidence            468999999999999999999999999999999987653

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=95.66  E-value=0.015  Score=49.02  Aligned_cols=33  Identities=15%  Similarity=0.244  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      -.|+|||.|--|...|..|.+.|++|+++|++.
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~   40 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETSR   40 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            369999999999999999999999999999974

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=95.63  E-value=0.009  Score=59.68  Aligned_cols=38  Identities=16%  Similarity=0.026  Sum_probs=35.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (486)
                      ..|+|||+|..|+-+|..|++.|.+|+++|+++++..+
T Consensus       147 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~  184 (385)
T 3klj_A          147 GKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLER  184 (385)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchh
Confidence            47999999999999999999999999999999988665

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=95.52  E-value=0.013  Score=50.31  Aligned_cols=34  Identities=35%  Similarity=0.488  Sum_probs=31.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ...|+|||+|.-|+.+|..|.+.|++|+++|++.
T Consensus        19 ~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~   52 (155)
T 2g1u_A           19 SKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNE   52 (155)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            3479999999999999999999999999999874

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=95.52  E-value=0.012  Score=48.92  Aligned_cols=33  Identities=18%  Similarity=0.372  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ..|+|||+|..|...|..|++.|++|.++|++.
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~   37 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   37 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            479999999999999999999999999999864

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=95.27  E-value=0.014  Score=56.04  Aligned_cols=37  Identities=16%  Similarity=0.053  Sum_probs=33.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+.+++-.
T Consensus       146 k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~~~  182 (312)
T 4gcm_A          146 KRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRA  182 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEecccccCc
Confidence            3799999999999999999999999999999987643

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=95.23  E-value=0.021  Score=48.77  Aligned_cols=34  Identities=18%  Similarity=0.184  Sum_probs=31.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ...++|+|+|-.|...|..|.+.|++|+++|+++
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~   36 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            4569999999999999999999999999999963

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=95.03  E-value=0.017  Score=59.11  Aligned_cols=37  Identities=19%  Similarity=0.168  Sum_probs=34.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      -+|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       172 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  208 (458)
T 1lvl_A          172 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILP  208 (458)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSST
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCcccc
Confidence            4799999999999999999999999999999998865

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=95.00  E-value=0.022  Score=47.79  Aligned_cols=33  Identities=30%  Similarity=0.488  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ..|+|+|+|.-|...|..|++.|++|.++|++.
T Consensus         7 ~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~   39 (141)
T 3llv_A            7 YEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK   39 (141)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            369999999999999999999999999999863

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=94.98  E-value=0.022  Score=56.69  Aligned_cols=39  Identities=15%  Similarity=0.202  Sum_probs=35.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCc
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (486)
                      .+++|||+|..|+-+|..|++.|.+|+++|+++++....
T Consensus       146 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~  184 (384)
T 2v3a_A          146 RRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGL  184 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhhcc
Confidence            479999999999999999999999999999999876653

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=94.92  E-value=0.022  Score=58.27  Aligned_cols=37  Identities=22%  Similarity=0.170  Sum_probs=34.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      -+|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       170 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  206 (464)
T 2eq6_A          170 KRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILP  206 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCcccc
Confidence            4799999999999999999999999999999988755

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=94.85  E-value=0.022  Score=58.05  Aligned_cols=37  Identities=27%  Similarity=0.198  Sum_probs=34.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      .+|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  207 (455)
T 1ebd_A          171 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILS  207 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccc
Confidence            5799999999999999999999999999999988754

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=94.83  E-value=0.022  Score=58.00  Aligned_cols=37  Identities=22%  Similarity=0.161  Sum_probs=34.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      ..|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       168 ~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~  204 (455)
T 2yqu_A          168 KRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILP  204 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCcccc
Confidence            4799999999999999999999999999999988654

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=94.80  E-value=0.022  Score=56.40  Aligned_cols=37  Identities=16%  Similarity=0.259  Sum_probs=34.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      ..|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  180 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG  180 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeecc
Confidence            4799999999999999999999999999999998765

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=94.80  E-value=0.026  Score=57.89  Aligned_cols=38  Identities=24%  Similarity=0.316  Sum_probs=35.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (486)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus       184 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~  221 (478)
T 1v59_A          184 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS  221 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCccccc
Confidence            47999999999999999999999999999999988763

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=94.76  E-value=0.027  Score=49.54  Aligned_cols=36  Identities=19%  Similarity=0.280  Sum_probs=32.2

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhC-CCcEEEEccCC
Q 011414           20 PTAFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNP   55 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~-G~~VlvlE~~~   55 (486)
                      ...-.|+|||.|..|...|..|.+. |++|+++|++.
T Consensus        37 ~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~   73 (183)
T 3c85_A           37 PGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIRE   73 (183)
T ss_dssp             CTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence            3345799999999999999999999 99999999974

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=94.48  E-value=0.039  Score=56.14  Aligned_cols=53  Identities=13%  Similarity=0.171  Sum_probs=40.4

Q ss_pred             CCCCCCCCCCC----CCCCCC-CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414            4 NESESELPVPP----YPPIEP-TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus         4 ~~~~~~~~~~~----~~~~~~-~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      +....+|-.|+    +.+..+ ....|.|||+|.-|...|..|+++|++|+++|++..
T Consensus        31 ~~~~~~w~~p~~~~~~~~~~~~~i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   88 (460)
T 3k6j_A           31 HSLAGQWSLPNDRGDHTNSEAYDVNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ   88 (460)
T ss_dssp             TCCTTSCBCSTTSCBTTSCCCCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             HHhhccccCCCCccccccCCcccCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH
Confidence            33455687773    222222 224699999999999999999999999999999876

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=94.45  E-value=0.035  Score=55.76  Aligned_cols=38  Identities=24%  Similarity=0.355  Sum_probs=35.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (486)
                      ..|+|||+|..|+-+|..|++.|.+|+++|+.+++..+
T Consensus       146 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~  183 (408)
T 2gqw_A          146 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSR  183 (408)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccc
Confidence            57999999999999999999999999999999987654

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=94.42  E-value=0.031  Score=53.47  Aligned_cols=35  Identities=20%  Similarity=0.221  Sum_probs=32.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (486)
                      ..|+|||+|..|+-+|..|++.|.+|+++|+.+..
T Consensus       153 ~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~  187 (314)
T 4a5l_A          153 KVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAF  187 (314)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CeEEEECCChHHHHHHHHHHHhCCeeeeecccccc
Confidence            47999999999999999999999999999987653

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=94.42  E-value=0.032  Score=56.78  Aligned_cols=37  Identities=11%  Similarity=0.045  Sum_probs=34.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       168 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  204 (450)
T 1ges_A          168 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLP  204 (450)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhh
Confidence            4799999999999999999999999999999988654

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=94.38  E-value=0.039  Score=44.23  Aligned_cols=32  Identities=28%  Similarity=0.390  Sum_probs=30.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCC-CcEEEEccC
Q 011414           23 FDLIVIGTGLPESVISAAASASG-KSVLHLDPN   54 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G-~~VlvlE~~   54 (486)
                      ..|+|+|+|..|..++..|.+.| ++|.+++++
T Consensus         6 ~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~   38 (118)
T 3ic5_A            6 WNICVVGAGKIGQMIAALLKTSSNYSVTVADHD   38 (118)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSEEEEEEESC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCceEEEEeCC
Confidence            46999999999999999999999 999999986

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=94.26  E-value=0.066  Score=52.72  Aligned_cols=45  Identities=18%  Similarity=0.243  Sum_probs=37.1

Q ss_pred             CCCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           15 YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        15 ~~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      -++-.+.++||||||||++|+++|+.|+++|++|+|+|+++..+|
T Consensus        10 ~~~~~~~~~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~~~~g   54 (382)
T 1ryi_A           10 RIRAMKRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGR   54 (382)
T ss_dssp             ----CCSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTTT
T ss_pred             HhhccCCCCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCcc
Confidence            334455679999999999999999999999999999999976554

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=94.09  E-value=0.05  Score=51.71  Aligned_cols=34  Identities=29%  Similarity=0.346  Sum_probs=31.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ...|.|||+|.-|...|..|+++|++|.++|++.
T Consensus         4 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (283)
T 4e12_A            4 ITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINT   37 (283)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            3469999999999999999999999999999875

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=94.07  E-value=0.042  Score=56.15  Aligned_cols=37  Identities=14%  Similarity=0.068  Sum_probs=34.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       167 ~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~  203 (463)
T 2r9z_A          167 KRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLF  203 (463)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCcccc
Confidence            4799999999999999999999999999999988653

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=94.00  E-value=0.03  Score=57.54  Aligned_cols=38  Identities=24%  Similarity=0.320  Sum_probs=35.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      ..+|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       186 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  223 (480)
T 3cgb_A          186 VEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGT  223 (480)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhh
Confidence            35799999999999999999999999999999988765

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=93.96  E-value=0.046  Score=52.87  Aligned_cols=33  Identities=24%  Similarity=0.365  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      -.|.|||+|.-|...|..++.+|++|+++|.++
T Consensus         7 ~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~   39 (319)
T 3ado_A            7 GDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEP   39 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEECCH
Confidence            469999999999999999999999999999875

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=93.93  E-value=0.055  Score=51.87  Aligned_cols=33  Identities=33%  Similarity=0.477  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ..|.|||+|.-|...|..|+++|++|+++|++.
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   48 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   48 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            359999999999999999999999999999874

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=93.81  E-value=0.054  Score=55.43  Aligned_cols=37  Identities=19%  Similarity=0.249  Sum_probs=34.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       179 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  215 (474)
T 1zmd_A          179 EKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGG  215 (474)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSC
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCC
Confidence            4799999999999999999999999999999998765

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=93.79  E-value=0.056  Score=52.10  Aligned_cols=48  Identities=10%  Similarity=0.009  Sum_probs=33.4

Q ss_pred             CCCCCCCCC-CCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414            9 ELPVPPYPP-IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus         9 ~~~~~~~~~-~~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      +|+.+.+.+ .......|.|||.|.-|...|..|+++|++|.+++++..
T Consensus         7 ~~~~~~~~~~~~~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   55 (310)
T 3doj_A            7 HHHHSSGLVPRGSHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLS   55 (310)
T ss_dssp             -----------CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             ccccccccCcccccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            344443222 233446799999999999999999999999999999764

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=93.77  E-value=0.042  Score=53.07  Aligned_cols=49  Identities=20%  Similarity=0.123  Sum_probs=31.0

Q ss_pred             CCCCCCC-CCCCCCC-CcccEEEECCChhHHHHHHHHhhCCC-cEEEEccCC
Q 011414            7 ESELPVP-PYPPIEP-TAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (486)
Q Consensus         7 ~~~~~~~-~~~~~~~-~~~DViIIGaGl~GL~aA~~La~~G~-~VlvlE~~~   55 (486)
                      |+-|+-+ +|+.++. ....|.|||+|.-|...|..|+++|+ +|.+++++.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~   58 (312)
T 3qsg_A            7 HSSGVDLGTENLYFQSNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAAS   58 (312)
T ss_dssp             ------------------CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSC
T ss_pred             cccccccCcccccccCCCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence            5567766 4766543 34579999999999999999999999 999999973

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=93.76  E-value=0.05  Score=56.02  Aligned_cols=37  Identities=22%  Similarity=0.229  Sum_probs=34.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+.+++-.
T Consensus       195 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~  231 (490)
T 2bc0_A          195 KRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLA  231 (490)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccchhh
Confidence            4699999999999999999999999999999988755

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=93.69  E-value=0.055  Score=55.25  Aligned_cols=37  Identities=16%  Similarity=0.087  Sum_probs=34.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      -.|+|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus       172 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  208 (464)
T 2a8x_A          172 KSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALP  208 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCcccc
Confidence            4799999999999999999999999999999988754

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=93.65  E-value=0.061  Score=55.43  Aligned_cols=38  Identities=18%  Similarity=0.112  Sum_probs=35.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (486)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus       175 k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~  212 (492)
T 3ic9_A          175 KSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANL  212 (492)
T ss_dssp             SEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTC
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc
Confidence            57999999999999999999999999999999987654

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=93.65  E-value=0.059  Score=49.99  Aligned_cols=37  Identities=22%  Similarity=0.287  Sum_probs=31.5

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ......|.|||+|.-|...|..|+++|++|++.+++.
T Consensus        16 ~~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~   52 (245)
T 3dtt_A           16 YFQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDP   52 (245)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            4445679999999999999999999999999999874

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=93.64  E-value=0.053  Score=45.14  Aligned_cols=31  Identities=32%  Similarity=0.377  Sum_probs=29.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (486)
                      .|+|+|+|..|...|..|.+.|++|.++|++
T Consensus         8 ~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~   38 (144)
T 2hmt_A            8 QFAVIGLGRFGGSIVKELHRMGHEVLAVDIN   38 (144)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEESC
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5999999999999999999999999999986

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=93.63  E-value=0.046  Score=56.13  Aligned_cols=37  Identities=16%  Similarity=0.108  Sum_probs=34.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~  222 (482)
T 1ojt_A          186 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQ  222 (482)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccc
Confidence            4799999999999999999999999999999988754

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=93.62  E-value=0.09  Score=55.16  Aligned_cols=44  Identities=27%  Similarity=0.357  Sum_probs=39.5

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (486)
                      .+.+|||||||||++|+.+|+.|+++|++|+|+|+++..||...
T Consensus        15 ~~~~~DVvVIGgGi~Gl~~A~~La~~G~~V~LlEk~d~~~GtS~   58 (561)
T 3da1_A           15 SEKQLDLLVIGGGITGAGIALDAQVRGIQTGLVEMNDFASGTSS   58 (561)
T ss_dssp             TTSCEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSSTTCSGGG
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCccc
Confidence            45679999999999999999999999999999999987777553

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=93.60  E-value=0.12  Score=52.32  Aligned_cols=42  Identities=26%  Similarity=0.252  Sum_probs=37.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCC-CcEEEEccCCCCCCCc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGSHF   61 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G-~~VlvlE~~~~~GG~~   61 (486)
                      |.++||||||||++|+++|+.|+++| ++|+|||+++.+|+.+
T Consensus        21 m~~~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~~~~~~~g~   63 (448)
T 3axb_A           21 MPRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAGHAPGSGD   63 (448)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHHHCSCEEEEESSSSTTCSG
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHhCCCCcEEEEccCCCCCCCc
Confidence            46799999999999999999999999 9999999966665433

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=93.58  E-value=0.06  Score=54.01  Aligned_cols=37  Identities=24%  Similarity=0.276  Sum_probs=34.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      ..|+|||+|..|+-+|..|++.|.+|+++|+.+++-.
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~  180 (410)
T 3ef6_A          144 TRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLV  180 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccch
Confidence            4799999999999999999999999999999988754

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=93.57  E-value=0.06  Score=53.06  Aligned_cols=39  Identities=15%  Similarity=0.157  Sum_probs=32.2

Q ss_pred             CCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           17 PIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        17 ~~~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ++++....|.|||.|.-|...|..|+++|++|.+++++.
T Consensus        17 ~~Mm~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~   55 (358)
T 4e21_A           17 NLYFQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNV   55 (358)
T ss_dssp             -----CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             hhhhcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            456667789999999999999999999999999999874

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=93.47  E-value=0.056  Score=52.92  Aligned_cols=36  Identities=11%  Similarity=0.048  Sum_probs=29.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (486)
                      ..|+|||+|.+|+-+|..|++.|.+|+++++++.+.
T Consensus       167 ~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~  202 (369)
T 3d1c_A          167 GQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLN  202 (369)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECC-----
T ss_pred             CEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCC
Confidence            379999999999999999999999999999988754

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=93.46  E-value=0.068  Score=54.26  Aligned_cols=37  Identities=22%  Similarity=0.260  Sum_probs=34.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (486)
                      +|+|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus       150 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~  186 (449)
T 3kd9_A          150 NVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRR  186 (449)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchh
Confidence            7999999999999999999999999999999987654

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=93.42  E-value=0.066  Score=51.04  Aligned_cols=36  Identities=14%  Similarity=0.083  Sum_probs=33.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (486)
                      ..|+|||+|..|+-+|..|++.|.+|+++++++++.
T Consensus       144 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~  179 (311)
T 2q0l_A          144 KEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFR  179 (311)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccC
Confidence            579999999999999999999999999999998773

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=93.39  E-value=0.074  Score=55.51  Aligned_cols=35  Identities=17%  Similarity=0.160  Sum_probs=32.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      ...|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus       178 ~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  212 (540)
T 3gwf_A          178 GRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQ  212 (540)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCC
T ss_pred             cceEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            35799999999999999999999999999999876

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=93.32  E-value=0.048  Score=55.74  Aligned_cols=37  Identities=19%  Similarity=0.154  Sum_probs=34.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       178 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~  214 (470)
T 1dxl_A          178 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVP  214 (470)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccc
Confidence            4799999999999999999999999999999988754

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=93.29  E-value=0.15  Score=49.86  Aligned_cols=42  Identities=31%  Similarity=0.350  Sum_probs=37.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s   63 (486)
                      ++||||||||++|+++|+.|+++|++|+|+|+++..+|...+
T Consensus         2 ~~dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~~~~~~~~~~   43 (372)
T 2uzz_A            2 KYDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMPPHQHGSH   43 (372)
T ss_dssp             CEEEEESCTTHHHHHHHHHHHHTTCCEEEECSSCSSSSSSSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCC
Confidence            489999999999999999999999999999999887665443

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=93.28  E-value=0.06  Score=48.85  Aligned_cols=32  Identities=13%  Similarity=0.234  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      .|+|||+|--|...|..|.+.|++|+++|++.
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~   33 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDR   33 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            59999999999999999999999999999863

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=93.21  E-value=0.071  Score=54.68  Aligned_cols=37  Identities=11%  Similarity=0.073  Sum_probs=34.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      -.++|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~  222 (479)
T 2hqm_A          186 KKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLR  222 (479)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCcccc
Confidence            4799999999999999999999999999999988653

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=93.19  E-value=0.2  Score=49.60  Aligned_cols=38  Identities=24%  Similarity=0.502  Sum_probs=35.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (486)
                      .++||||||||++|+++|+.|+++|++|+||||++..+
T Consensus         3 ~~~DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~~~~   40 (397)
T 2oln_A            3 ESYDVVVVGGGPVGLATAWQVAERGHRVLVLERHTFFN   40 (397)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCC
Confidence            45899999999999999999999999999999998765

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=93.17  E-value=0.083  Score=51.42  Aligned_cols=34  Identities=15%  Similarity=0.182  Sum_probs=31.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC-cEEEEccCC
Q 011414           22 AFDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~-~VlvlE~~~   55 (486)
                      ...|.|||+|..|...|..|++.|+ +|.++|.+.
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~   43 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   43 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCh
Confidence            3579999999999999999999998 999999975

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=93.11  E-value=0.075  Score=54.87  Aligned_cols=37  Identities=8%  Similarity=0.020  Sum_probs=34.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      -.|+|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus       177 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~  213 (500)
T 1onf_A          177 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILR  213 (500)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCT
T ss_pred             CeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCc
Confidence            4799999999999999999999999999999988754

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=93.06  E-value=0.076  Score=50.59  Aligned_cols=35  Identities=20%  Similarity=0.120  Sum_probs=33.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (486)
                      -.|+|||+|..|+-+|..|++.|.+|+++++.+++
T Consensus       145 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~  179 (310)
T 1fl2_A          145 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEM  179 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCccc
Confidence            36999999999999999999999999999999887

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=93.05  E-value=0.082  Score=55.23  Aligned_cols=37  Identities=27%  Similarity=0.334  Sum_probs=33.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (486)
                      ....|+|||+|.+|+-+|..|++.|.+|+++++.+.+
T Consensus       184 ~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~~  220 (545)
T 3uox_A          184 TGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNW  220 (545)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCCC
T ss_pred             CCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCCc
Confidence            3457999999999999999999999999999998763

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=93.03  E-value=0.077  Score=54.44  Aligned_cols=34  Identities=29%  Similarity=0.471  Sum_probs=31.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ...|.|||+|.-|+..|..|+++|++|+++|++.
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~   41 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQ   41 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            3579999999999999999999999999999864

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=93.02  E-value=0.092  Score=52.48  Aligned_cols=39  Identities=26%  Similarity=0.285  Sum_probs=35.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCc
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (486)
                      ..|+|||+|..|+-+|..|++.|.+|+++|+.+++..+.
T Consensus       143 ~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~  181 (404)
T 3fg2_P          143 KHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARV  181 (404)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchhhc
Confidence            469999999999999999999999999999999876553

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=93.02  E-value=0.089  Score=51.76  Aligned_cols=36  Identities=14%  Similarity=0.254  Sum_probs=32.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      +....|.|||+|.-|.+.|..|+++|++|.++++++
T Consensus        27 ~~~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~   62 (356)
T 3k96_A           27 PFKHPIAILGAGSWGTALALVLARKGQKVRLWSYES   62 (356)
T ss_dssp             CCCSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCH
T ss_pred             ccCCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            344689999999999999999999999999999864

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=93.01  E-value=0.1  Score=52.76  Aligned_cols=38  Identities=11%  Similarity=0.135  Sum_probs=34.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCc
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (486)
                      .++|||+|..|+-.|..|++.|.+|+++|+.+++....
T Consensus       149 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~~  186 (437)
T 4eqs_A          149 KVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLM  186 (437)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTTS
T ss_pred             EEEEECCccchhhhHHHHHhcCCcceeeeeeccccccc
Confidence            79999999999999999999999999999999875443

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=92.99  E-value=0.082  Score=51.76  Aligned_cols=35  Identities=26%  Similarity=0.301  Sum_probs=31.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ....|.|||+|..|...|..|+++|++|.+++++.
T Consensus         3 ~~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~   37 (359)
T 1bg6_A            3 ESKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   37 (359)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            34579999999999999999999999999999863

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=92.89  E-value=0.1  Score=47.08  Aligned_cols=35  Identities=14%  Similarity=0.243  Sum_probs=31.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      ...|.|||+|.-|...|..|+++|++|.+++++..
T Consensus        19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~   53 (209)
T 2raf_A           19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ   53 (209)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            34699999999999999999999999999998865

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=92.88  E-value=0.087  Score=53.75  Aligned_cols=37  Identities=24%  Similarity=0.257  Sum_probs=34.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+.+++-.
T Consensus       177 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  213 (467)
T 1zk7_A          177 ERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFFR  213 (467)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccCC
Confidence            4699999999999999999999999999999987654

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=92.88  E-value=0.081  Score=54.04  Aligned_cols=36  Identities=11%  Similarity=0.035  Sum_probs=33.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (486)
                      -.|+|||+|.+|+-+|..|++.|.+|+++++++.+-
T Consensus       198 k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~~  233 (464)
T 2xve_A          198 KTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPM  233 (464)
T ss_dssp             SEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCCC
T ss_pred             CEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCCC
Confidence            469999999999999999999999999999987653

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=92.82  E-value=0.09  Score=53.68  Aligned_cols=37  Identities=19%  Similarity=0.249  Sum_probs=34.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      -.++|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       175 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  211 (468)
T 2qae_A          175 KTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAP  211 (468)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCcccc
Confidence            4799999999999999999999999999999988764

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=92.81  E-value=0.087  Score=50.76  Aligned_cols=36  Identities=19%  Similarity=0.162  Sum_probs=33.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (486)
                      -.|+|||+|..|+-+|..|++.|.+|+++++++.+.
T Consensus       160 ~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~  195 (333)
T 1vdc_A          160 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFR  195 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCC
T ss_pred             CeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCC
Confidence            479999999999999999999999999999998763

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=92.80  E-value=0.2  Score=52.67  Aligned_cols=40  Identities=25%  Similarity=0.419  Sum_probs=36.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (486)
                      .++||||||||++|+++|+.|+++|++|+|||+++..+|.
T Consensus        31 ~~~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~~~~~Gt   70 (571)
T 2rgh_A           31 EELDLLIIGGGITGAGVAVQAAASGIKTGLIEMQDFAEGT   70 (571)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTCSG
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCc
Confidence            4699999999999999999999999999999999866653

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=92.78  E-value=0.085  Score=55.17  Aligned_cols=37  Identities=19%  Similarity=0.200  Sum_probs=33.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (486)
                      ....|+|||+|.+|+-+|..|++.|.+|+++++.+.+
T Consensus       190 ~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~  226 (549)
T 4ap3_A          190 TGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSANY  226 (549)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCC
T ss_pred             CCCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCCc
Confidence            3457999999999999999999999999999998763

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=92.76  E-value=0.1  Score=52.32  Aligned_cols=39  Identities=23%  Similarity=0.203  Sum_probs=35.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCc
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (486)
                      ..|+|||+|..|+-+|..|++.|.+|+++|+.+++-.+.
T Consensus       153 ~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~~~  191 (415)
T 3lxd_A          153 KNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARV  191 (415)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhhhh
Confidence            469999999999999999999999999999999876543

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=92.73  E-value=0.097  Score=50.16  Aligned_cols=35  Identities=26%  Similarity=0.305  Sum_probs=31.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ....|.|||+|.-|...|..|+++|++|.+++++.
T Consensus         6 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   40 (303)
T 3g0o_A            6 TDFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNP   40 (303)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            34579999999999999999999999999999875

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=92.72  E-value=0.089  Score=53.35  Aligned_cols=35  Identities=9%  Similarity=0.004  Sum_probs=32.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCc-EEEEccCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKS-VLHLDPNPFY   57 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~-VlvlE~~~~~   57 (486)
                      -+|+|||+|.+|+-.|..|++.|.+ |+++++++.+
T Consensus       213 k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~~~  248 (447)
T 2gv8_A          213 ESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGD  248 (447)
T ss_dssp             CCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCS
T ss_pred             CEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCCCc
Confidence            4799999999999999999999999 9999998765

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=92.72  E-value=0.1  Score=53.06  Aligned_cols=35  Identities=20%  Similarity=0.260  Sum_probs=32.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      ...|.|||.|.+|+++|..|++.|++|.+.|+++.
T Consensus         9 ~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~   43 (451)
T 3lk7_A            9 NKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPF   43 (451)
T ss_dssp             TCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCG
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcc
Confidence            35799999999999999999999999999999763

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=92.70  E-value=0.091  Score=50.24  Aligned_cols=36  Identities=17%  Similarity=0.074  Sum_probs=33.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (486)
                      -.|+|||+|..|+-+|..|++.|.+|+++++++.+.
T Consensus       146 ~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~  181 (320)
T 1trb_A          146 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR  181 (320)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCccc
Confidence            479999999999999999999999999999988763

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=92.69  E-value=0.11  Score=52.40  Aligned_cols=35  Identities=29%  Similarity=0.358  Sum_probs=32.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ....+.|||.|..||..|+.||+.|++|+.+|-+.
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~   54 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNP   54 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            44579999999999999999999999999999874

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=92.69  E-value=0.094  Score=50.39  Aligned_cols=36  Identities=14%  Similarity=0.065  Sum_probs=33.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (486)
                      ..|+|||+|..|+-+|..|++.|.+|+++++++.+.
T Consensus       153 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~  188 (325)
T 2q7v_A          153 KKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLR  188 (325)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCC
Confidence            369999999999999999999999999999998764

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=92.68  E-value=0.099  Score=50.92  Aligned_cols=33  Identities=15%  Similarity=0.289  Sum_probs=30.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (486)
                      ...|.|||+|.-|...|..|+++|++|.+++++
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~   35 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEAINVLARG   35 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence            357999999999999999999999999999985

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=92.66  E-value=0.094  Score=50.75  Aligned_cols=36  Identities=19%  Similarity=0.159  Sum_probs=33.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (486)
                      ..|+|||+|..|+-.|..|++.|.+|+++++++++.
T Consensus       156 ~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~  191 (335)
T 2a87_A          156 QDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFR  191 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCS
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCC
Confidence            479999999999999999999999999999998763

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=92.61  E-value=0.1  Score=50.44  Aligned_cols=33  Identities=27%  Similarity=0.412  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ..|.|||+|.-|...|..|+++|++|.++++++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD   35 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence            369999999999999999999999999999975

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=92.60  E-value=0.099  Score=50.62  Aligned_cols=41  Identities=15%  Similarity=0.243  Sum_probs=31.9

Q ss_pred             CCCCCCCcccEEEECCChhHHHHHHHHhhCC----CcEEEEccCC
Q 011414           15 YPPIEPTAFDLIVIGTGLPESVISAAASASG----KSVLHLDPNP   55 (486)
Q Consensus        15 ~~~~~~~~~DViIIGaGl~GL~aA~~La~~G----~~VlvlE~~~   55 (486)
                      -+++++....|.|||+|.-|...|..|+++|    ++|.+++++.
T Consensus        15 ~~~~~~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~   59 (322)
T 2izz_A           15 TENLYFQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDM   59 (322)
T ss_dssp             -------CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCT
T ss_pred             CchhccCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCc
Confidence            4667777778999999999999999999999    8999999875

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=92.53  E-value=0.14  Score=52.36  Aligned_cols=33  Identities=24%  Similarity=0.340  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ..|.|||+|.-|...|..|+++|++|+++|++.
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~   70 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFARVGISVVAVESDP   70 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            469999999999999999999999999999875

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=92.49  E-value=0.1  Score=50.17  Aligned_cols=33  Identities=21%  Similarity=0.265  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ..|.|||+|.-|.+.|..|+++|++|.++++++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD   35 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence            369999999999999999999999999999975

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=92.47  E-value=0.3  Score=44.57  Aligned_cols=51  Identities=18%  Similarity=0.064  Sum_probs=41.5

Q ss_pred             chHHHHHHHHHHHc-CcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE
Q 011414          279 GELPQAFCRRAAVK-GCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (486)
Q Consensus       279 ~~L~qal~r~~~~~-Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~  332 (486)
                      ..+.+.|.+.++.. |.+++ +++|++|..+  ++++++|++.+|++++||.||.
T Consensus        68 ~~~~~~l~~~~~~~~gv~i~-~~~v~~i~~~--~~~v~~v~~~~g~~i~a~~VV~  119 (232)
T 2cul_A           68 WAFHARAKYLLEGLRPLHLF-QATATGLLLE--GNRVVGVRTWEGPPARGEKVVL  119 (232)
T ss_dssp             HHHHHHHHHHHHTCTTEEEE-ECCEEEEEEE--TTEEEEEEETTSCCEECSEEEE
T ss_pred             HHHHHHHHHHHHcCCCcEEE-EeEEEEEEEe--CCEEEEEEECCCCEEECCEEEE
Confidence            36677777877776 77777 6899999887  6777788888998999999985

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=92.47  E-value=0.11  Score=49.03  Aligned_cols=33  Identities=21%  Similarity=0.225  Sum_probs=30.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      .|.|||+|.-|...|..|+++|++|.+++++..
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~   34 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCcc
Confidence            589999999999999999999999999998763

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=92.45  E-value=0.092  Score=50.63  Aligned_cols=37  Identities=8%  Similarity=0.211  Sum_probs=33.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      -.|+|||+|..|+-+|..|++.|.+|+++++++.+..
T Consensus       153 ~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~  189 (335)
T 2zbw_A          153 KRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFRA  189 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCCS
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccCc
Confidence            4799999999999999999999999999999987644

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=92.36  E-value=0.17  Score=51.57  Aligned_cols=40  Identities=15%  Similarity=0.107  Sum_probs=35.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCc
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (486)
                      .-.|+|||+|..|+-+|..|++.|.+|+++++.+++....
T Consensus       172 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~  211 (466)
T 3l8k_A          172 PQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITL  211 (466)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCCCC
Confidence            3579999999999999999999999999999999876543

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=92.31  E-value=0.17  Score=48.36  Aligned_cols=33  Identities=21%  Similarity=0.392  Sum_probs=30.8

Q ss_pred             cEEEEC-CChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           24 DLIVIG-TGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        24 DViIIG-aGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      .|.||| +|.-|...|..|+++|++|.+++++..
T Consensus        23 ~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~   56 (298)
T 2pv7_A           23 KIVIVGGYGKLGGLFARYLRASGYPISILDREDW   56 (298)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcc
Confidence            699999 999999999999999999999998764

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=92.28  E-value=0.11  Score=54.38  Aligned_cols=36  Identities=14%  Similarity=0.084  Sum_probs=33.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      .|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       153 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  188 (565)
T 3ntd_A          153 HATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMT  188 (565)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSCT
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccch
Confidence            799999999999999999999999999999987654

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=92.18  E-value=0.11  Score=53.26  Aligned_cols=38  Identities=16%  Similarity=0.110  Sum_probs=34.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (486)
                      -.|+|||+|..|+-.|..|++.|.+|+++|+.+++...
T Consensus       199 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~  236 (491)
T 3urh_A          199 ASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILGG  236 (491)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecccccccc
Confidence            46999999999999999999999999999999987653

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=92.18  E-value=0.12  Score=49.37  Aligned_cols=35  Identities=17%  Similarity=0.045  Sum_probs=32.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      ...|.|||.|.-|...|..|+++|++|.+++++..
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   49 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIE   49 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            45799999999999999999999999999999864

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=92.13  E-value=0.25  Score=48.58  Aligned_cols=37  Identities=24%  Similarity=0.264  Sum_probs=35.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (486)
                      ++||||||||++|+++|+.|+++|++|+|+|+++..|
T Consensus         3 ~~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~~~~   39 (389)
T 2gf3_A            3 HFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPH   39 (389)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence            5899999999999999999999999999999998766

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=92.07  E-value=0.13  Score=52.08  Aligned_cols=35  Identities=29%  Similarity=0.360  Sum_probs=32.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      ...+.|||+|.-|+..|..|+++|++|+++|++..
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~   42 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDAR   42 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            35789999999999999999999999999999864

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=92.05  E-value=0.14  Score=52.37  Aligned_cols=34  Identities=18%  Similarity=0.106  Sum_probs=32.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhC-CC-cEEEEccCCC
Q 011414           23 FDLIVIGTGLPESVISAAASAS-GK-SVLHLDPNPF   56 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~-G~-~VlvlE~~~~   56 (486)
                      ..|.|||+|.-|+..|..|+++ |+ +|+++|++..
T Consensus        19 mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           19 KKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            4799999999999999999999 99 9999999876

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=92.05  E-value=0.13  Score=49.22  Aligned_cols=33  Identities=21%  Similarity=0.364  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ..|.|||+|.-|...|..|+++|++|.+++++.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   36 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP   36 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            369999999999999999999999999999864

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=92.03  E-value=0.12  Score=49.56  Aligned_cols=36  Identities=22%  Similarity=0.260  Sum_probs=33.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (486)
                      -.|+|||+|..|+-.|..|++.|.+|+++++.+++.
T Consensus       156 ~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~  191 (319)
T 3cty_A          156 KRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYM  191 (319)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccC
Confidence            369999999999999999999999999999988763

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=91.99  E-value=0.12  Score=52.45  Aligned_cols=33  Identities=24%  Similarity=0.400  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ..|.|||+|..|+..|..|+++|++|+++|++.
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~   35 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDR   35 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCH
Confidence            369999999999999999999999999999875

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=91.98  E-value=0.13  Score=52.58  Aligned_cols=37  Identities=14%  Similarity=0.065  Sum_probs=34.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      -.|+|||+|..|+-.|..|++.|.+|+++++.+++..
T Consensus       188 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  224 (478)
T 3dk9_A          188 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLR  224 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred             ccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCcccc
Confidence            4799999999999999999999999999999888653

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=91.93  E-value=0.15  Score=51.86  Aligned_cols=38  Identities=16%  Similarity=-0.001  Sum_probs=34.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (486)
                      ..++|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus       148 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~  185 (452)
T 3oc4_A          148 QTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPK  185 (452)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccccc
Confidence            46999999999999999999999999999999887543

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=91.83  E-value=0.1  Score=53.09  Aligned_cols=36  Identities=11%  Similarity=0.075  Sum_probs=32.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCC
Q 011414           22 AFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFY   57 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~   57 (486)
                      ...|+|||+|.+|+-+|..|++.  |.+|+++++++.+
T Consensus       227 ~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~  264 (463)
T 3s5w_A          227 PMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASAL  264 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSC
T ss_pred             CCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCC
Confidence            45799999999999999999999  9999999998654

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=91.74  E-value=0.16  Score=46.27  Aligned_cols=35  Identities=14%  Similarity=0.217  Sum_probs=31.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (486)
                      .+...|+|||+|-.|...|..|.++|.+|+|++.+
T Consensus        29 L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~   63 (223)
T 3dfz_A           29 LKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT   63 (223)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence            34567999999999999999999999999999974

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=91.72  E-value=0.14  Score=49.19  Aligned_cols=37  Identities=22%  Similarity=0.168  Sum_probs=34.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      ..|+|||+|..|+-+|..|++.|.+|.++++.+.+..
T Consensus       174 ~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~  210 (338)
T 3itj_A          174 KPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRA  210 (338)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCC
Confidence            4699999999999999999999999999999987644

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=91.69  E-value=0.41  Score=48.22  Aligned_cols=37  Identities=19%  Similarity=0.292  Sum_probs=34.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC--cEEEEccCCCCC
Q 011414           22 AFDLIVIGTGLPESVISAAASASGK--SVLHLDPNPFYG   58 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~--~VlvlE~~~~~G   58 (486)
                      .+||||||+|++|++||..|++.|+  +|+++|+++..+
T Consensus         4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~   42 (431)
T 1q1r_A            4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIP   42 (431)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCC
T ss_pred             CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCC
Confidence            5899999999999999999999998  799999998754

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=91.60  E-value=0.14  Score=51.83  Aligned_cols=32  Identities=25%  Similarity=0.428  Sum_probs=30.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      .|.|||+|..|+..|..|+++|++|+++|++.
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~   33 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58999999999999999999999999999864

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=91.50  E-value=0.16  Score=52.72  Aligned_cols=38  Identities=13%  Similarity=0.095  Sum_probs=34.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (486)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~  252 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLI  252 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTC
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccccc
Confidence            57999999999999999999999999999999876543

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=91.47  E-value=0.15  Score=49.88  Aligned_cols=37  Identities=11%  Similarity=0.115  Sum_probs=33.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      -.|+|||+|..|+-+|..|++.|.+|+++++.+.+.+
T Consensus       164 ~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~  200 (360)
T 3ab1_A          164 KRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQG  200 (360)
T ss_dssp             CEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCC
Confidence            3699999999999999999999999999999987644

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=91.46  E-value=0.11  Score=52.77  Aligned_cols=35  Identities=20%  Similarity=0.161  Sum_probs=32.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (486)
                      ..|.|||.|.+|+++|..|++.|++|.+.|.+...
T Consensus         6 ~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~   40 (439)
T 2x5o_A            6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP   40 (439)
T ss_dssp             CCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSC
T ss_pred             CEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCc
Confidence            36999999999999999999999999999998765

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=91.31  E-value=0.21  Score=47.97  Aligned_cols=35  Identities=20%  Similarity=0.142  Sum_probs=31.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      ...|.|||+|.-|...|..|++.|++|.+++++..
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~   64 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAE   64 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGG
T ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            35799999999999999999999999999998753

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=91.31  E-value=0.44  Score=49.05  Aligned_cols=34  Identities=12%  Similarity=0.201  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhh---CCCcEEEEccCCC
Q 011414           23 FDLIVIGTGLPESVISAAASA---SGKSVLHLDPNPF   56 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~---~G~~VlvlE~~~~   56 (486)
                      +||||||||++|+++|+.|++   .|.+|+|+|+.+.
T Consensus         3 ~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~~   39 (511)
T 2weu_A            3 RSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNV   39 (511)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC---
T ss_pred             ceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCCC
Confidence            699999999999999999999   9999999999864

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=91.28  E-value=0.18  Score=51.76  Aligned_cols=34  Identities=29%  Similarity=0.390  Sum_probs=31.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ...|.|||+|.-|...|..|+++|++|.++|++.
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~   38 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISA   38 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            3469999999999999999999999999999875

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=91.25  E-value=0.18  Score=48.10  Aligned_cols=33  Identities=30%  Similarity=0.370  Sum_probs=30.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      +..|.|||+|.-|...|..|+ +|++|+++|++.
T Consensus        12 ~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~   44 (293)
T 1zej_A           12 HMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSE   44 (293)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCH
Confidence            467999999999999999999 999999999875

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=91.24  E-value=0.095  Score=48.10  Aligned_cols=33  Identities=12%  Similarity=0.164  Sum_probs=30.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (486)
                      ...|.|||+|.-|.+.|..|+++|++|..+++.
T Consensus         6 ~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~   38 (232)
T 3dfu_A            6 RLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP   38 (232)
T ss_dssp             CCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG
T ss_pred             CcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH
Confidence            357999999999999999999999999999985

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=91.22  E-value=0.46  Score=49.51  Aligned_cols=37  Identities=8%  Similarity=0.146  Sum_probs=34.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhh---CCCcEEEEccCCC
Q 011414           20 PTAFDLIVIGTGLPESVISAAASA---SGKSVLHLDPNPF   56 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~---~G~~VlvlE~~~~   56 (486)
                      +..+||||||||++|+++|+.|++   .|.+|+|+|+.+.
T Consensus        23 ~~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~   62 (550)
T 2e4g_A           23 GKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDI   62 (550)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCCC
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCCC
Confidence            357899999999999999999999   9999999999764

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=91.13  E-value=0.2  Score=52.75  Aligned_cols=38  Identities=16%  Similarity=0.073  Sum_probs=34.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (486)
                      ..|+|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus       188 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~  225 (588)
T 3ics_A          188 RHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPP  225 (588)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccccc
Confidence            46999999999999999999999999999999887654

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=91.09  E-value=0.16  Score=53.63  Aligned_cols=32  Identities=16%  Similarity=0.097  Sum_probs=30.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (486)
                      -.|+|||+|..|+-+|..|++.|.+|+++++.
T Consensus       287 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~  318 (598)
T 2x8g_A          287 GKTLVIGASYVALECAGFLASLGGDVTVMVRS  318 (598)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            36999999999999999999999999999987

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=90.98  E-value=0.19  Score=50.70  Aligned_cols=33  Identities=18%  Similarity=0.196  Sum_probs=30.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      ..|.|||+|.-|+..|..|++ |++|+++|++..
T Consensus        37 mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~   69 (432)
T 3pid_A           37 MKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQA   69 (432)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHH
T ss_pred             CEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHH
Confidence            479999999999999999998 999999998753

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=90.97  E-value=0.22  Score=48.02  Aligned_cols=37  Identities=16%  Similarity=0.189  Sum_probs=33.0

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCC-cEEEEccC
Q 011414           18 IEPTAFDLIVIGTGLPESVISAAASASGK-SVLHLDPN   54 (486)
Q Consensus        18 ~~~~~~DViIIGaGl~GL~aA~~La~~G~-~VlvlE~~   54 (486)
                      +.|....|.|||+|..|...|..|++.|+ +|.++|.+
T Consensus         4 m~~~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~   41 (315)
T 3tl2_A            4 MTIKRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIP   41 (315)
T ss_dssp             CCCCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence            34455679999999999999999999999 99999997

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=90.96  E-value=0.11  Score=48.92  Aligned_cols=35  Identities=14%  Similarity=0.160  Sum_probs=32.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ....|+|||+|-.|+..|..|.+.|.+|+|++.+.
T Consensus        12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A           12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            44679999999999999999999999999999865

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=90.96  E-value=0.23  Score=50.70  Aligned_cols=37  Identities=22%  Similarity=0.164  Sum_probs=34.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      ..|+|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus       181 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  217 (476)
T 3lad_A          181 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLP  217 (476)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc
Confidence            4799999999999999999999999999999988754

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=90.95  E-value=0.42  Score=48.39  Aligned_cols=37  Identities=27%  Similarity=0.541  Sum_probs=34.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (486)
                      .++||||||||++||++|..|+++|++|+|+|+++.+
T Consensus         5 ~~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~   41 (453)
T 3atr_A            5 LKYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWN   41 (453)
T ss_dssp             EECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGG
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence            4689999999999999999999999999999998764

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=90.92  E-value=0.14  Score=48.77  Aligned_cols=33  Identities=15%  Similarity=0.210  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ..|.|||+|--|.+.|..|+++|++|.+++++.
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~   35 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA   35 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence            369999999999999999999999999999874

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=90.91  E-value=0.15  Score=52.92  Aligned_cols=36  Identities=19%  Similarity=0.107  Sum_probs=33.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (486)
                      ..|+|||+|.+|+-+|..|++.|.+|+++++.+++.
T Consensus       356 k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~  391 (521)
T 1hyu_A          356 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK  391 (521)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccC
Confidence            479999999999999999999999999999998874

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=90.86  E-value=0.19  Score=45.75  Aligned_cols=35  Identities=14%  Similarity=0.296  Sum_probs=30.9

Q ss_pred             CcccEEEECC-ChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           21 TAFDLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        21 ~~~DViIIGa-Gl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ....|+|.|| |.-|..++..|.++|++|.++.|+.
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   55 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNE   55 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECCh
Confidence            3456999998 9999999999999999999999864

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=90.86  E-value=0.2  Score=49.87  Aligned_cols=34  Identities=26%  Similarity=0.317  Sum_probs=31.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      -.|+|||+|..|+.+|..|...|.+|+++|++..
T Consensus       191 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  224 (405)
T 4dio_A          191 AKIFVMGAGVAGLQAIATARRLGAVVSATDVRPA  224 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTT
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            4699999999999999999999999999999863

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=90.81  E-value=0.22  Score=45.07  Aligned_cols=33  Identities=21%  Similarity=0.236  Sum_probs=30.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ..|.|||+|..|...|..|++.|++|.+++++.
T Consensus        29 ~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~   61 (215)
T 2vns_A           29 PKVGILGSGDFARSLATRLVGSGFKVVVGSRNP   61 (215)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            469999999999999999999999999999863

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=90.72  E-value=0.24  Score=46.62  Aligned_cols=34  Identities=18%  Similarity=0.220  Sum_probs=31.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      ..|+|.|+|.-|...+..|.++|++|.++.++..
T Consensus         4 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~   37 (286)
T 3gpi_A            4 SKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQ   37 (286)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTS
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            4699999999999999999999999999998754

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=90.71  E-value=0.21  Score=48.47  Aligned_cols=32  Identities=19%  Similarity=0.342  Sum_probs=30.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (486)
                      ..|.|||+|.-|...|..|+++|++|.+++++
T Consensus        15 ~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~   46 (335)
T 1z82_A           15 MRFFVLGAGSWGTVFAQMLHENGEEVILWARR   46 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            47999999999999999999999999999986

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=90.67  E-value=0.21  Score=47.33  Aligned_cols=33  Identities=24%  Similarity=0.288  Sum_probs=30.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      .|.|||+|.-|...|..|+++|++|.+++++..
T Consensus         3 ~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pef_A            3 KFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPE   35 (287)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            589999999999999999999999999999754

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=90.65  E-value=0.21  Score=48.22  Aligned_cols=33  Identities=15%  Similarity=0.413  Sum_probs=29.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ...|.|||+|.-|...|..|+++|++|.++ ++.
T Consensus        19 ~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~   51 (318)
T 3hwr_A           19 GMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARP   51 (318)
T ss_dssp             -CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCH
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcH
Confidence            457999999999999999999999999999 654

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=90.65  E-value=0.13  Score=46.78  Aligned_cols=35  Identities=17%  Similarity=0.240  Sum_probs=31.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEE-EccCC
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLH-LDPNP   55 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~Vlv-lE~~~   55 (486)
                      ....|.|||+|.-|...|..|+++|++|.+ ++++.
T Consensus        22 ~mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~   57 (220)
T 4huj_A           22 SMTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGP   57 (220)
T ss_dssp             GSCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCG
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCH
Confidence            345799999999999999999999999999 88764

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=90.63  E-value=0.22  Score=48.09  Aligned_cols=33  Identities=21%  Similarity=0.231  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-cEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~-~VlvlE~~~   55 (486)
                      ..|.|||+|..|...|..|+++|+ +|.++|++.
T Consensus         5 ~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~   38 (317)
T 2ewd_A            5 RKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAE   38 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCc
Confidence            479999999999999999999998 999999975

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=90.63  E-value=0.21  Score=47.57  Aligned_cols=37  Identities=16%  Similarity=0.090  Sum_probs=34.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      ..|+|||+|..|+-+|..|++.|.+|+++++++++..
T Consensus       155 ~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~  191 (323)
T 3f8d_A          155 RVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKA  191 (323)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCCS
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCCc
Confidence            4699999999999999999999999999999988755

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=90.62  E-value=0.24  Score=47.82  Aligned_cols=33  Identities=15%  Similarity=0.242  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ..|.|||+|.-|...|..|+++|++|.+++++.
T Consensus        32 ~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   64 (320)
T 4dll_A           32 RKITFLGTGSMGLPMARRLCEAGYALQVWNRTP   64 (320)
T ss_dssp             SEEEEECCTTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHhCCCeEEEEcCCH
Confidence            479999999999999999999999999999874

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=90.59  E-value=0.13  Score=52.42  Aligned_cols=34  Identities=15%  Similarity=0.365  Sum_probs=31.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      .+.|||+|+|-.|...|..|+..|++|+|+|++.
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~   36 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDG   36 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCH
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            3579999999999999999999999999999974

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=90.55  E-value=0.43  Score=47.51  Aligned_cols=38  Identities=26%  Similarity=0.393  Sum_probs=34.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (486)
                      +.++||||||||++||++|+.|+++|++|+|+|+++..
T Consensus         3 ~~~~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~~   40 (421)
T 3nix_A            3 REKVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFP   40 (421)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSS
T ss_pred             CccCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            34689999999999999999999999999999999754

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=90.46  E-value=0.23  Score=47.84  Aligned_cols=33  Identities=30%  Similarity=0.348  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC--cEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~--~VlvlE~~~   55 (486)
                      ..|.|||+|..|...|..|+++|+  +|.++|++.
T Consensus         8 mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            8 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            479999999999999999999999  999999974

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=90.46  E-value=0.37  Score=47.66  Aligned_cols=37  Identities=14%  Similarity=0.297  Sum_probs=34.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (486)
                      .++||||||||++||++|..|+++|++|+|+|+++.+
T Consensus         5 ~~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~   41 (399)
T 2x3n_A            5 NHIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRE   41 (399)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence            4689999999999999999999999999999998765

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=90.32  E-value=0.22  Score=50.18  Aligned_cols=33  Identities=30%  Similarity=0.301  Sum_probs=30.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      ..-|||.|.-|+..|..|+++|++|+++|++..
T Consensus        13 ~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~   45 (431)
T 3ojo_A           13 KLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQ   45 (431)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             ccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            578999999999999999999999999999854

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=90.22  E-value=0.62  Score=48.98  Aligned_cols=53  Identities=19%  Similarity=0.279  Sum_probs=43.9

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeC------CC---------cEEEcCEEEE
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA------SG---------QDILSHKLVL  332 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~------~G---------~~i~A~~VI~  332 (486)
                      ..+.+.|.+.++..|++|+++++|++|..++ ++++++|++.      +|         .+++||.||.
T Consensus       144 ~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~-~g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~  211 (584)
T 2gmh_A          144 GHLVSWMGEQAEALGVEVYPGYAAAEILFHE-DGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIF  211 (584)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCEEEEEECT-TSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEE
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcC-CCCEEEEEeCCccccCCCCcccccCCceEEECCEEEE
Confidence            4788889898889999999999999998862 4677788876      33         6899999984

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=90.22  E-value=0.3  Score=46.82  Aligned_cols=34  Identities=29%  Similarity=0.490  Sum_probs=31.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ...|.|||.|.-|...|..|+++|++|.+++++.
T Consensus         9 ~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~   42 (306)
T 3l6d_A            9 EFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSP   42 (306)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3579999999999999999999999999999875

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=90.21  E-value=0.6  Score=47.47  Aligned_cols=38  Identities=13%  Similarity=0.060  Sum_probs=31.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCCC
Q 011414           21 TAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYG   58 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~G   58 (486)
                      ...||||||||++||+||..|++.  |++|+|+|+++++|
T Consensus         2 ~~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~   41 (472)
T 3iwa_A            2 SLKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRIS   41 (472)
T ss_dssp             --CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC----
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCccc
Confidence            357999999999999999999999  99999999999875

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=90.21  E-value=0.25  Score=50.27  Aligned_cols=36  Identities=22%  Similarity=0.129  Sum_probs=32.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC-cEEEEccCCCC
Q 011414           22 AFDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFY   57 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~-~VlvlE~~~~~   57 (486)
                      ..+|+|||+|..|+-+|..+.+.|. +|++++++++.
T Consensus       264 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~  300 (456)
T 2vdc_G          264 GKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRK  300 (456)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCST
T ss_pred             CCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCcc
Confidence            3579999999999999999999997 59999998765

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=90.18  E-value=0.24  Score=50.76  Aligned_cols=36  Identities=11%  Similarity=0.146  Sum_probs=31.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      |++.+|.|||+|.-|...|..|+++|++|.+++++.
T Consensus        13 ~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~   48 (480)
T 2zyd_A           13 MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSR   48 (480)
T ss_dssp             --CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred             cCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            456789999999999999999999999999999863

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=90.10  E-value=0.25  Score=46.83  Aligned_cols=35  Identities=9%  Similarity=0.060  Sum_probs=33.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (486)
                      ..|+|||+|..|+-+|..|++.|.+|+++++++++
T Consensus       148 ~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~  182 (315)
T 3r9u_A          148 KEVAVLGGGDTALEEALYLANICSKIYLIHRRDEF  182 (315)
T ss_dssp             SEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCC
Confidence            46999999999999999999999999999999877

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=90.06  E-value=0.3  Score=47.24  Aligned_cols=33  Identities=15%  Similarity=0.319  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-cEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~-~VlvlE~~~   55 (486)
                      ..|.|||+|..|...|..|+..|+ +|.++|.+.
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~   38 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   38 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence            479999999999999999999998 999999874

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=89.98  E-value=0.33  Score=46.74  Aligned_cols=33  Identities=21%  Similarity=0.439  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC--cEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~--~VlvlE~~~   55 (486)
                      ..|.|||+|.-|...|..|+++|+  +|.++|++.
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~   68 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   68 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCH
Confidence            479999999999999999999999  999999976

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=89.96  E-value=0.14  Score=42.99  Aligned_cols=33  Identities=21%  Similarity=0.204  Sum_probs=30.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ..|.|||+|..|...|..|++.|.+|.+++++.
T Consensus        22 ~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~   54 (144)
T 3oj0_A           22 NKILLVGNGMLASEIAPYFSYPQYKVTVAGRNI   54 (144)
T ss_dssp             CEEEEECCSHHHHHHGGGCCTTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            469999999999999999999999999999863

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=89.93  E-value=0.27  Score=44.04  Aligned_cols=32  Identities=13%  Similarity=0.184  Sum_probs=29.5

Q ss_pred             cEEEEC-CChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           24 DLIVIG-TGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        24 DViIIG-aGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      .|.||| +|..|...|..|+++|++|.+++++.
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~   34 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            489999 99999999999999999999999863

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=89.91  E-value=0.31  Score=47.48  Aligned_cols=33  Identities=18%  Similarity=0.254  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ..|.|||.|.-|...|..|+++|++|.+++++.
T Consensus         9 ~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~   41 (341)
T 3ktd_A            9 RPVCILGLGLIGGSLLRDLHAANHSVFGYNRSR   41 (341)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            469999999999999999999999999999885

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=89.91  E-value=0.27  Score=46.99  Aligned_cols=37  Identities=11%  Similarity=0.090  Sum_probs=33.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      ..|+|||+|..|+-+|..|++.|.+|+++++.+++.+
T Consensus       155 ~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~  191 (332)
T 3lzw_A          155 RRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRA  191 (332)
T ss_dssp             CEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCSS
T ss_pred             CEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCCc
Confidence            4699999999999999999999999999999988743

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=89.86  E-value=0.65  Score=47.58  Aligned_cols=43  Identities=28%  Similarity=0.333  Sum_probs=38.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhh-CCCcEEEEc--------cCCCCCCCccc
Q 011414           21 TAFDLIVIGTGLPESVISAAASA-SGKSVLHLD--------PNPFYGSHFSS   63 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~-~G~~VlvlE--------~~~~~GG~~~s   63 (486)
                      .+|||||||||.+|++||..|++ .|++|+++|        +++.+||.|..
T Consensus         2 ~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~c~~   53 (490)
T 1fec_A            2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVN   53 (490)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHHH
T ss_pred             ccccEEEECCCHHHHHHHHHHHHHcCCEEEEEecccccccccCCCcCccccC
Confidence            46999999999999999999999 999999999        46789997654

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=89.83  E-value=0.7  Score=47.44  Aligned_cols=43  Identities=33%  Similarity=0.364  Sum_probs=38.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhh-CCCcEEEEc--------cCCCCCCCccc
Q 011414           21 TAFDLIVIGTGLPESVISAAASA-SGKSVLHLD--------PNPFYGSHFSS   63 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~-~G~~VlvlE--------~~~~~GG~~~s   63 (486)
                      .++||||||||.+|++||..|++ .|++|+++|        +++.+||.|..
T Consensus         6 ~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~~~~   57 (495)
T 2wpf_A            6 KAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCVN   57 (495)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBCBTTHHHHH
T ss_pred             cccCEEEECCChhHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCeeec
Confidence            47999999999999999999999 999999999        46789997654

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=89.83  E-value=0.3  Score=50.04  Aligned_cols=34  Identities=9%  Similarity=-0.023  Sum_probs=31.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      -.++|||+|..|+-.|..|++.|.+|+++++...
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~  219 (488)
T 3dgz_A          186 GKTLVVGASYVALECAGFLTGIGLDTTVMMRSIP  219 (488)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCceEEEEcCcc
Confidence            4699999999999999999999999999998753

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=89.81  E-value=0.3  Score=49.99  Aligned_cols=35  Identities=14%  Similarity=0.170  Sum_probs=32.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ...+|.|||.|.-|...|..|+++|++|.+++++.
T Consensus         3 ~~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~   37 (484)
T 4gwg_A            3 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   37 (484)
T ss_dssp             CCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CCCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            34689999999999999999999999999999975

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=89.76  E-value=0.84  Score=46.11  Aligned_cols=37  Identities=16%  Similarity=0.152  Sum_probs=34.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGS   59 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~GG   59 (486)
                      +||||||+|.+|++||..|++.  |++|+++|+++.+|.
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~   39 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISF   39 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCB
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCc
Confidence            5999999999999999999998  999999999987653

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=89.73  E-value=0.21  Score=49.27  Aligned_cols=33  Identities=24%  Similarity=0.317  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      -.|+|||+|..|+.+|..|...|.+|+++|++.
T Consensus       185 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~  217 (381)
T 3p2y_A          185 ASALVLGVGVAGLQALATAKRLGAKTTGYDVRP  217 (381)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHHTCEEEEECSSG
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            469999999999999999999999999999885

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=89.71  E-value=0.22  Score=47.18  Aligned_cols=33  Identities=21%  Similarity=0.265  Sum_probs=30.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      .|.|||.|.-|...|..|+++|++|.+++++..
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPA   35 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHTCCEEEECSSGG
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            589999999999999999999999999999854

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=89.68  E-value=0.28  Score=49.16  Aligned_cols=34  Identities=24%  Similarity=0.337  Sum_probs=31.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      ..|||||.|-.|...|..|.+.|++|+++|++..
T Consensus         5 ~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~   38 (413)
T 3l9w_A            5 MRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPD   38 (413)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            4699999999999999999999999999999853

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=89.67  E-value=0.25  Score=49.44  Aligned_cols=31  Identities=23%  Similarity=0.264  Sum_probs=29.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      .|.|||+|..|+..|..|++ |++|+++|++.
T Consensus         2 kI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~   32 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL-QNEVTIVDILP   32 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHhC-CCEEEEEECCH
Confidence            58999999999999999999 99999999874

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=89.61  E-value=0.86  Score=46.73  Aligned_cols=39  Identities=23%  Similarity=0.394  Sum_probs=35.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCCC
Q 011414           20 PTAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYG   58 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~G   58 (486)
                      +..+||||||+|++|++||..|+++  |.+|+++|+++++|
T Consensus         9 ~~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~   49 (493)
T 1m6i_A            9 PSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELP   49 (493)
T ss_dssp             CSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCC
T ss_pred             CCcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCC
Confidence            4679999999999999999999887  89999999998765

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=89.57  E-value=0.74  Score=47.04  Aligned_cols=42  Identities=31%  Similarity=0.296  Sum_probs=38.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s   63 (486)
                      .+|||||||||++||+||..|++.|++|+++|+ +.+||.|..
T Consensus        25 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~~   66 (484)
T 3o0h_A           25 FDFDLFVIGSGSGGVRAARLAGALGKRVAIAEE-YRIGGTCVI   66 (484)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTHHHHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCcCEEEEEeC-CCCCCceec
Confidence            479999999999999999999999999999999 789997654

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=89.55  E-value=0.21  Score=49.07  Aligned_cols=32  Identities=19%  Similarity=0.238  Sum_probs=30.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      .|.|||+|.-|...|..|+++|++|.+++++.
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~   48 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   48 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            79999999999999999999999999999863

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=89.47  E-value=0.27  Score=50.22  Aligned_cols=33  Identities=18%  Similarity=0.169  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhC--CCcEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~--G~~VlvlE~~~   55 (486)
                      ..|.|||+|..|+..|..|+++  |++|+++|++.
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~   40 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNE   40 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            4799999999999999999999  89999999864

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=89.41  E-value=0.34  Score=46.94  Aligned_cols=33  Identities=21%  Similarity=0.199  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-cEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~-~VlvlE~~~   55 (486)
                      ..|.|||+|..|...|..|++.|+ +|.++|.+.
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~   48 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIE   48 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSST
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCH
Confidence            479999999999999999999999 999999975

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=89.41  E-value=0.22  Score=47.74  Aligned_cols=31  Identities=19%  Similarity=0.204  Sum_probs=29.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhC-----C-CcEEEEcc
Q 011414           23 FDLIVIGTGLPESVISAAASAS-----G-KSVLHLDP   53 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~-----G-~~VlvlE~   53 (486)
                      ..|.|||+|.-|...|..|+++     | ++|.++++
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR   45 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence            4799999999999999999999     9 99999987

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=89.38  E-value=0.31  Score=46.65  Aligned_cols=32  Identities=25%  Similarity=0.359  Sum_probs=30.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--cEEEEccCC
Q 011414           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~--~VlvlE~~~   55 (486)
                      .|.|||+|..|...|..|+..|+  +|.++|.+.
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~   35 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE   35 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            58999999999999999999999  999999874

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=89.38  E-value=0.23  Score=47.94  Aligned_cols=30  Identities=20%  Similarity=0.265  Sum_probs=28.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEcc
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDP   53 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~   53 (486)
                      .|.|||+|.-|...|..|+++|++|.++++
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEEc
Confidence            489999999999999999999999999998

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=89.36  E-value=0.32  Score=46.67  Aligned_cols=32  Identities=16%  Similarity=0.082  Sum_probs=29.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ..|.|||+|--|.+.|..|+ +|.+|.+++++.
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~   34 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQ   34 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCH
Confidence            46999999999999999999 999999999875

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=89.28  E-value=0.19  Score=50.15  Aligned_cols=40  Identities=25%  Similarity=0.391  Sum_probs=36.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCCCCC
Q 011414           21 TAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSH   60 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~GG~   60 (486)
                      .++||||||||++|+++|+.|+++  |++|+|||+++..+|.
T Consensus        35 ~~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~~~~~   76 (405)
T 3c4n_A           35 EAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEE   76 (405)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCSSCTT
T ss_pred             CcCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCCCCcc
Confidence            459999999999999999999999  9999999998765554

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=89.25  E-value=0.2  Score=48.97  Aligned_cols=35  Identities=14%  Similarity=0.080  Sum_probs=32.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCC-------CcEEEEccCCC
Q 011414           22 AFDLIVIGTGLPESVISAAASASG-------KSVLHLDPNPF   56 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G-------~~VlvlE~~~~   56 (486)
                      ...|.|||+|.-|...|..|+++|       ++|.+++++..
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~   49 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEED   49 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCB
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChh
Confidence            357999999999999999999999       99999999876

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=89.25  E-value=0.44  Score=49.28  Aligned_cols=33  Identities=12%  Similarity=0.046  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      -.++|||+|..|+-.|..|++.|.+|+++++..
T Consensus       211 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~  243 (519)
T 3qfa_A          211 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSI  243 (519)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEeccc
Confidence            369999999999999999999999999999853

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=89.10  E-value=0.33  Score=49.76  Aligned_cols=33  Identities=18%  Similarity=0.228  Sum_probs=30.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhC--CCcEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~--G~~VlvlE~~~   55 (486)
                      ..|.|||+|..|+..|..|+++  |++|+++|++.
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~   44 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNT   44 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            4799999999999999999999  79999999863

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=89.09  E-value=0.76  Score=47.21  Aligned_cols=40  Identities=38%  Similarity=0.464  Sum_probs=35.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      |+++||||||||++|+++|+.|+++|++|+|+|+++..+|
T Consensus         1 M~~~DVvIIGgGi~G~~~A~~La~~G~~V~llE~~~~~~g   40 (501)
T 2qcu_A            1 METKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQDLACA   40 (501)
T ss_dssp             --CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTCS
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHhCCCCEEEEECCCCCCC
Confidence            3569999999999999999999999999999999875443

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=89.09  E-value=0.91  Score=39.17  Aligned_cols=50  Identities=20%  Similarity=0.074  Sum_probs=41.0

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~  333 (486)
                      .++.+.+.+.++..|.+++++ +|++|..+  ++. +.|++.+| ++.||.||..
T Consensus        56 ~~~~~~l~~~~~~~gv~v~~~-~v~~i~~~--~~~-~~v~~~~g-~i~ad~vI~A  105 (180)
T 2ywl_A           56 EELLRRLEAHARRYGAEVRPG-VVKGVRDM--GGV-FEVETEEG-VEKAERLLLC  105 (180)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEC-CCCEEEEC--SSS-EEEECSSC-EEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHcCCEEEeC-EEEEEEEc--CCE-EEEEECCC-EEEECEEEEC
Confidence            477888888889999999999 99999875  333 56777788 8999999964

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=89.08  E-value=0.34  Score=46.88  Aligned_cols=34  Identities=24%  Similarity=0.237  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHH-HHHHHhhCCCcEEEEccCCC
Q 011414           23 FDLIVIGTGLPESV-ISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        23 ~DViIIGaGl~GL~-aA~~La~~G~~VlvlE~~~~   56 (486)
                      ..|.|||.|-+|++ +|..|.+.|++|.+.|+++.
T Consensus         5 ~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~   39 (326)
T 3eag_A            5 KHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY   39 (326)
T ss_dssp             CEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             cEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            36999999999996 78889999999999999865

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=89.05  E-value=0.33  Score=45.08  Aligned_cols=35  Identities=14%  Similarity=0.251  Sum_probs=31.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhCC----CcEEEEccCCC
Q 011414           22 AFDLIVIGTGLPESVISAAASASG----KSVLHLDPNPF   56 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G----~~VlvlE~~~~   56 (486)
                      ...|.|||+|.-|...|..|+++|    ++|.+++++..
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~   42 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKK   42 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCcc
Confidence            357999999999999999999999    79999999865

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=88.94  E-value=0.33  Score=45.49  Aligned_cols=33  Identities=9%  Similarity=-0.088  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      ..|+|||+|..|+-+|..|++.| +|+++++.+.
T Consensus       142 ~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~  174 (297)
T 3fbs_A          142 GKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIV  174 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTC
T ss_pred             CEEEEEecCccHHHHHHHhhhcC-cEEEEECCCC
Confidence            47999999999999999999999 9999998776

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=88.88  E-value=0.89  Score=45.27  Aligned_cols=60  Identities=15%  Similarity=0.123  Sum_probs=46.3

Q ss_pred             eEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecC--CCeEEEEEeCCCcEEEcCEEEE
Q 011414          271 LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQN--SGSYKGVRLASGQDILSHKLVL  332 (486)
Q Consensus       271 ~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~--~g~~~gV~~~~G~~i~A~~VI~  332 (486)
                      ..||..-..++.++|.+.++..|.+|+++++|++|..+++  +++ +.|++.+| +++||+||+
T Consensus       101 ~~~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~-~~v~~~~g-~i~ad~VVl  162 (401)
T 2gqf_A          101 QLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVR-FVLQVNST-QWQCKNLIV  162 (401)
T ss_dssp             EEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCC-EEEEETTE-EEEESEEEE
T ss_pred             EEccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCe-EEEEECCC-EEECCEEEE
Confidence            3567555568999999999999999999999999976410  133 57777666 799999884

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=88.79  E-value=0.78  Score=47.57  Aligned_cols=38  Identities=5%  Similarity=0.161  Sum_probs=34.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhh---CCCcEEEEccCCCC
Q 011414           20 PTAFDLIVIGTGLPESVISAAASA---SGKSVLHLDPNPFY   57 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~---~G~~VlvlE~~~~~   57 (486)
                      +..+||||||||++|+++|+.|++   .|.+|+|||+.+..
T Consensus         3 ~~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~~   43 (538)
T 2aqj_A            3 KPIKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAAIP   43 (538)
T ss_dssp             CBCCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSSSC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCCCC
Confidence            356899999999999999999999   99999999997643

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=88.79  E-value=0.37  Score=45.75  Aligned_cols=33  Identities=18%  Similarity=0.198  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ..|.|||+|.-|...|..|++.|++|.+++++.
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   37 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLME   37 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            479999999999999999999999999999864

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=88.72  E-value=0.43  Score=49.71  Aligned_cols=37  Identities=14%  Similarity=0.012  Sum_probs=33.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      -.++|||+|..|+=.|..+++-|.+|+++++...+-+
T Consensus       224 ~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~L~~  260 (542)
T 4b1b_A          224 GKTLVVGASYVALECSGFLNSLGYDVTVAVRSIVLRG  260 (542)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCSSTT
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCeEEEecccccccc
Confidence            4699999999999999999999999999998766533

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=88.70  E-value=0.94  Score=48.30  Aligned_cols=42  Identities=31%  Similarity=0.318  Sum_probs=37.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (486)
                      +.++||||||+|++||+||+.|+++|.+|+||||....||..
T Consensus         3 ~~~~DVvVIGgG~AGL~AAl~aae~G~~V~vlEK~~~~~g~s   44 (660)
T 2bs2_A            3 VQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHS   44 (660)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGGGSGG
T ss_pred             cccccEEEECchHHHHHHHHHHHHCCCcEEEEeccCCCCCcc
Confidence            346899999999999999999999999999999998776544

>2e1m_B L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=88.67  E-value=0.17  Score=41.94  Aligned_cols=53  Identities=4%  Similarity=-0.066  Sum_probs=40.8

Q ss_pred             cEEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhhccCCCcceEEEEEEEecCCCC
Q 011414          323 QDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK  377 (486)
Q Consensus       323 ~~i~A~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~~  377 (486)
                      ++++||+||++ |...+..  +.++|+||..+....+...++...|.++.+++||=
T Consensus         4 ~~~~Ad~VIvTvP~~vL~~--I~F~P~LP~~k~~Ai~~l~~g~~~Kv~l~f~~~FW   57 (130)
T 2e1m_B            4 QTWTGDLAIVTIPFSSLRF--VKVTPPFSYKKRRAVIETHYDQATKVLLEFSRRWW   57 (130)
T ss_dssp             EEEEESEEEECSCHHHHTT--SEEESCCCHHHHHHHHHCCEECEEEEEEEESSCGG
T ss_pred             eEEEcCEEEEcCCHHHHhc--CcCCCCCCHHHHHHHHhCCCcceeEEEEEECCCCC
Confidence            46899999976 4333344  35788899887777677778999999999999964

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=88.63  E-value=0.85  Score=46.94  Aligned_cols=38  Identities=39%  Similarity=0.621  Sum_probs=35.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (486)
                      +.++||||||||++||++|+.|+++|++|+|+|+++..
T Consensus         5 ~~~~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~   42 (512)
T 3e1t_A            5 PEVFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFP   42 (512)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSS
T ss_pred             CccCCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCC
Confidence            45699999999999999999999999999999999754

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=88.59  E-value=0.77  Score=46.59  Aligned_cols=42  Identities=31%  Similarity=0.317  Sum_probs=38.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s   63 (486)
                      .+|||||||||.+|++||..|++.|++|+++|+ +.+||.|..
T Consensus         4 ~~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~~   45 (463)
T 4dna_A            4 FDYDLFVIGGGSGGVRSGRLAAALGKKVAIAEE-FRYGGTCVI   45 (463)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTTTCCEEEEES-SCTTHHHHH
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhCCCEEEEEeC-CCCCCcccc
Confidence            469999999999999999999999999999999 789997653

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=88.47  E-value=1  Score=46.18  Aligned_cols=41  Identities=17%  Similarity=0.203  Sum_probs=38.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhC---CCcEEEEccCCCCCCCccc
Q 011414           22 AFDLIVIGTGLPESVISAAASAS---GKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~---G~~VlvlE~~~~~GG~~~s   63 (486)
                      ++||||||||.+|++||..|++.   |++|+++|+++ +||.+..
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~GG~~~~   45 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAVL   45 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-cCCcccC
Confidence            48999999999999999999999   99999999999 9997654

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=88.44  E-value=0.51  Score=44.31  Aligned_cols=32  Identities=13%  Similarity=0.149  Sum_probs=29.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (486)
                      ..|+|+|+|-.|..+|..|++.|.+|.++.|+
T Consensus       120 k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~  151 (271)
T 1nyt_A          120 LRILLIGAGGASRGVLLPLLSLDCAVTITNRT  151 (271)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCEEEEEECC
Confidence            46999999999999999999999999999886

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=88.42  E-value=0.36  Score=49.20  Aligned_cols=35  Identities=11%  Similarity=0.035  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHHHh--------------------hCCC-cEEEEccCCCC
Q 011414           23 FDLIVIGTGLPESVISAAAS--------------------ASGK-SVLHLDPNPFY   57 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La--------------------~~G~-~VlvlE~~~~~   57 (486)
                      -.|+|||+|..|+-+|..|+                    +.|. +|.++++++..
T Consensus       146 ~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~  201 (460)
T 1cjc_A          146 DTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPL  201 (460)
T ss_dssp             SEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGG
T ss_pred             CEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCChH
Confidence            57999999999999999999                    6787 79999997654

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=88.37  E-value=0.41  Score=45.93  Aligned_cols=32  Identities=19%  Similarity=0.276  Sum_probs=29.5

Q ss_pred             cEEEECCChhHHHHHHHHhhC--CCcEEEEccCC
Q 011414           24 DLIVIGTGLPESVISAAASAS--GKSVLHLDPNP   55 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~--G~~VlvlE~~~   55 (486)
                      .|.|||+|..|...|..|++.  |.+|.++|++.
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~   35 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            589999999999999999985  89999999985

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=88.33  E-value=0.44  Score=48.72  Aligned_cols=33  Identities=12%  Similarity=0.024  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      -.++|||+|..|+-.|..|++.|.+|+++++..
T Consensus       188 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~  220 (483)
T 3dgh_A          188 GKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSI  220 (483)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCEEEEEeCCC
Confidence            469999999999999999999999999999854

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=88.32  E-value=0.44  Score=48.74  Aligned_cols=34  Identities=12%  Similarity=0.180  Sum_probs=31.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ..+|.|||+|.-|...|..|+++|++|.+++++.
T Consensus         5 ~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~   38 (474)
T 2iz1_A            5 QANFGVVGMAVMGKNLALNVESRGYTVAIYNRTT   38 (474)
T ss_dssp             TBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            4679999999999999999999999999999863

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=88.26  E-value=0.91  Score=48.03  Aligned_cols=42  Identities=21%  Similarity=0.160  Sum_probs=37.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (486)
                      +.++||||||+|++||+||+.|+++|.+|+||||....||..
T Consensus        16 ~~~~DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~~~~~g~s   57 (621)
T 2h88_A           16 DHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHT   57 (621)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSGG
T ss_pred             cccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCc
Confidence            356899999999999999999999999999999988766643

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=88.19  E-value=0.44  Score=44.73  Aligned_cols=32  Identities=16%  Similarity=0.316  Sum_probs=29.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      .|.|||+|.-|...|..|++.|++|.+++++.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   33 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            48999999999999999999999999999874

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=88.17  E-value=0.36  Score=46.53  Aligned_cols=33  Identities=15%  Similarity=0.161  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCC-CcEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASG-KSVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G-~~VlvlE~~~   55 (486)
                      ..|.|||+|.-|...|..|+++| ++|.+++++.
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~   58 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF   58 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred             CeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            36999999999999999999999 9999999985

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=88.13  E-value=1  Score=47.42  Aligned_cols=42  Identities=29%  Similarity=0.244  Sum_probs=37.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (486)
                      +.++||||||+|++||+||+.|+++|.+|+||||+...||..
T Consensus         5 ~~~~DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~~~~~g~s   46 (588)
T 2wdq_A            5 VREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHT   46 (588)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSGG
T ss_pred             cccCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc
Confidence            356899999999999999999999999999999998876643

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=88.08  E-value=0.39  Score=47.96  Aligned_cols=33  Identities=30%  Similarity=0.457  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      -.|+|||+|-.|+.+|..|...|.+|+++|++.
T Consensus       173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~  205 (401)
T 1x13_A          173 AKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRP  205 (401)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCG
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            469999999999999999999999999999874

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=88.01  E-value=1.1  Score=46.19  Aligned_cols=37  Identities=11%  Similarity=0.229  Sum_probs=33.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhh------------CCCcEEEEccCCCC
Q 011414           21 TAFDLIVIGTGLPESVISAAASA------------SGKSVLHLDPNPFY   57 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~------------~G~~VlvlE~~~~~   57 (486)
                      ..+||||||||++|+++|+.|++            .|.+|+|+|+.+..
T Consensus         6 ~~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~~~   54 (526)
T 2pyx_A            6 PITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPDVA   54 (526)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSSCC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCCCC
Confidence            46899999999999999999999            99999999997643

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=87.98  E-value=0.43  Score=46.73  Aligned_cols=33  Identities=21%  Similarity=0.319  Sum_probs=30.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      .|+|+|+|..|..+|..+.+.|++|.++|.+..
T Consensus         3 ~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~   35 (363)
T 4ffl_A            3 TICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQ   35 (363)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            489999999999999999999999999998753

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=87.95  E-value=0.5  Score=45.69  Aligned_cols=36  Identities=17%  Similarity=0.234  Sum_probs=32.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCC-cEEEEccCC
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~-~VlvlE~~~   55 (486)
                      |....|.|||+|..|.+.|..|+..|. +|.++|.+.
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~   41 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAE   41 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence            345679999999999999999999999 999999976

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=87.94  E-value=1  Score=47.56  Aligned_cols=38  Identities=29%  Similarity=0.364  Sum_probs=34.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC-CCC
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP-FYG   58 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~-~~G   58 (486)
                      .+|||||||||++|+.||..|++.|.+|+++|++. .+|
T Consensus        26 ~~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG   64 (637)
T 2zxi_A           26 DEFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIG   64 (637)
T ss_dssp             GCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTT
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccC
Confidence            46999999999999999999999999999999984 444

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=87.93  E-value=0.46  Score=44.94  Aligned_cols=32  Identities=19%  Similarity=0.209  Sum_probs=29.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      .|.|||+|.-|...|..|+++|++|.+++++.
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~   33 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFP   33 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTCCEEEECSST
T ss_pred             eEEEEeccHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            48999999999999999999999999999875

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=87.74  E-value=0.4  Score=44.52  Aligned_cols=32  Identities=9%  Similarity=0.240  Sum_probs=29.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCC-CcEEEEccCC
Q 011414           24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNP   55 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G-~~VlvlE~~~   55 (486)
                      .|.|||+|.-|...|..|+++| ++|.+++++.
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~   34 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEECCCH
Confidence            4899999999999999999999 9999999864

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=87.72  E-value=0.55  Score=44.30  Aligned_cols=34  Identities=18%  Similarity=0.169  Sum_probs=31.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC---cEEEEccCC
Q 011414           22 AFDLIVIGTGLPESVISAAASASGK---SVLHLDPNP   55 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~---~VlvlE~~~   55 (486)
                      ...|.|||+|.-|...|..|+++|+   +|.+++++.
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~   39 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSL   39 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSS
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCH
Confidence            3569999999999999999999999   999999975

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=87.66  E-value=0.24  Score=45.27  Aligned_cols=32  Identities=6%  Similarity=-0.030  Sum_probs=29.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ..++|+|+|..|...|..|.+.|+ |+++|++.
T Consensus        10 ~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~   41 (234)
T 2aef_A           10 RHVVICGWSESTLECLRELRGSEV-FVLAEDEN   41 (234)
T ss_dssp             CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGG
T ss_pred             CEEEEECCChHHHHHHHHHHhCCe-EEEEECCH
Confidence            469999999999999999999999 99999864

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=87.58  E-value=0.42  Score=44.34  Aligned_cols=33  Identities=18%  Similarity=0.254  Sum_probs=30.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-cEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~-~VlvlE~~~   55 (486)
                      ..|+|||+|-.|+.+|..|+++|. +++++|+..
T Consensus        32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            479999999999999999999997 899999863

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=87.57  E-value=0.41  Score=51.68  Aligned_cols=33  Identities=30%  Similarity=0.287  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ..|.|||+|.-|...|..|+++|++|+++|++.
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~  345 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNE  345 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCH
Confidence            359999999999999999999999999999975

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=87.36  E-value=0.55  Score=43.30  Aligned_cols=45  Identities=11%  Similarity=0.131  Sum_probs=29.1

Q ss_pred             CCCCCCCCCCCCcccEEEECC-ChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           10 LPVPPYPPIEPTAFDLIVIGT-GLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        10 ~~~~~~~~~~~~~~DViIIGa-Gl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      ||.|.+...+..  -|+|.|+ |--|...|..|++.|++|.+++++..
T Consensus        12 ~~~~~~~~~m~k--~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~   57 (251)
T 3orf_A           12 SGLVPRGSHMSK--NILVLGGSGALGAEVVKFFKSKSWNTISIDFREN   57 (251)
T ss_dssp             ----------CC--EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             ccccccccccCC--EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            444445554432  4788886 56799999999999999999998764

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=87.29  E-value=0.73  Score=48.51  Aligned_cols=40  Identities=23%  Similarity=0.226  Sum_probs=36.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      |..+||||||||++|+++|+.|+++|++|+|+|+++..++
T Consensus        21 M~~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~~   60 (591)
T 3i3l_A           21 MTRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRY   60 (591)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCCC
Confidence            5679999999999999999999999999999999976544

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=87.28  E-value=0.95  Score=42.76  Aligned_cols=46  Identities=13%  Similarity=0.041  Sum_probs=35.3

Q ss_pred             CCCCCCCCCCCCcccEEEECC-ChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           10 LPVPPYPPIEPTAFDLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        10 ~~~~~~~~~~~~~~DViIIGa-Gl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ++.|..++..+...-|+|.|| |.-|...|..|+++|++|.++.++.
T Consensus        14 ~~~~~~~~~~l~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~   60 (302)
T 1w6u_A           14 LQKAMLPPNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM   60 (302)
T ss_dssp             CCSCCSCTTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccCCCCCcccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            455555555555556888875 6789999999999999999998863

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=87.25  E-value=0.51  Score=46.78  Aligned_cols=33  Identities=24%  Similarity=0.308  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      -.|+|||+|-.|+.+|..|...|.+|+++|++.
T Consensus       173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~  205 (384)
T 1l7d_A          173 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA  205 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            469999999999999999999999999999875

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=87.21  E-value=0.61  Score=45.00  Aligned_cols=36  Identities=14%  Similarity=0.146  Sum_probs=32.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCC-cEEEEccCC
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~-~VlvlE~~~   55 (486)
                      |....|.|||+|..|.+.|..|+..|. +|.++|.+.
T Consensus         3 m~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~   39 (321)
T 3p7m_A            3 MARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQ   39 (321)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCh
Confidence            334579999999999999999999998 999999976

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=87.21  E-value=0.52  Score=44.68  Aligned_cols=33  Identities=27%  Similarity=0.366  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ..|.|||+|.-|...|..|++.|++|.+++++.
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   38 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   38 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            369999999999999999999999999999864

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=87.18  E-value=0.54  Score=48.18  Aligned_cols=33  Identities=15%  Similarity=0.176  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      .+|.|||+|.-|...|..|+++|++|.+++++.
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~   35 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            479999999999999999999999999999864

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=87.07  E-value=0.54  Score=48.33  Aligned_cols=33  Identities=18%  Similarity=0.185  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ..|.|||+|.-|...|..|+++|++|.+++++.
T Consensus        11 ~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~   43 (497)
T 2p4q_A           11 ADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQ   43 (497)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            479999999999999999999999999999874

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=87.04  E-value=0.61  Score=41.01  Aligned_cols=33  Identities=21%  Similarity=0.225  Sum_probs=30.1

Q ss_pred             ccEEEECC-ChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           23 FDLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGa-Gl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ..|+|+|+ |.-|...+..|.++|++|.++.++.
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~   37 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS   37 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeCh
Confidence            46999998 9999999999999999999999864

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=87.03  E-value=0.52  Score=44.49  Aligned_cols=33  Identities=15%  Similarity=0.279  Sum_probs=30.5

Q ss_pred             ccEEEECC-ChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           23 FDLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGa-Gl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ..|.|||+ |.-|...|..|+++|++|.+++++.
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~   45 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAP   45 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            36999999 9999999999999999999999864

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=87.00  E-value=0.51  Score=46.50  Aligned_cols=33  Identities=24%  Similarity=0.314  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ..|+|+|+|-.|+.+|..|+..|.+|+++|++.
T Consensus       167 ~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~  199 (369)
T 2eez_A          167 ASVVILGGGTVGTNAAKIALGMGAQVTILDVNH  199 (369)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            469999999999999999999999999999874

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=86.97  E-value=0.52  Score=46.31  Aligned_cols=33  Identities=21%  Similarity=0.285  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      -.|+|+|+|-.|+.++..|...|.+|++++++.
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~  200 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV  200 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            469999999999999999999999999999874

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=86.97  E-value=0.68  Score=44.48  Aligned_cols=42  Identities=14%  Similarity=0.140  Sum_probs=34.0

Q ss_pred             CCCCCCCCcccEEEECC-ChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           14 PYPPIEPTAFDLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        14 ~~~~~~~~~~DViIIGa-Gl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      +.++-.....-|+|.|| |.-|...+..|+++|++|.++.++.
T Consensus        12 ~~~~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~   54 (330)
T 2pzm_A           12 SGLVPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFA   54 (330)
T ss_dssp             --CCSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCS
T ss_pred             cCCcccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            44454555567999997 9999999999999999999999864

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=86.91  E-value=0.46  Score=45.82  Aligned_cols=32  Identities=19%  Similarity=0.234  Sum_probs=29.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--cEEEEccCC
Q 011414           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~--~VlvlE~~~   55 (486)
                      .|.|||+|..|...|..|+++|+  +|.++|++.
T Consensus         2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~   35 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence            58999999999999999999999  999999874

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=86.79  E-value=0.57  Score=44.01  Aligned_cols=32  Identities=22%  Similarity=0.480  Sum_probs=29.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--cEEEEccCC
Q 011414           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~--~VlvlE~~~   55 (486)
                      .|.|||+|.-|...|..|+++|+  +|.+++++.
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   36 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence            58999999999999999999999  999999874

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=86.77  E-value=0.6  Score=41.60  Aligned_cols=32  Identities=28%  Similarity=0.344  Sum_probs=29.2

Q ss_pred             cEEEECC-ChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           24 DLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        24 DViIIGa-Gl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      .|+|+|| |.-|...+..|.++|++|.++.|+.
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNA   34 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCc
Confidence            4899994 9999999999999999999999874

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=86.70  E-value=0.33  Score=54.28  Aligned_cols=37  Identities=16%  Similarity=0.116  Sum_probs=34.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      -.|+|||+|..|+-+|..|++.|.+|+|+|+++++..
T Consensus       285 k~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~~  321 (965)
T 2gag_A          285 ARIAVATTNDSAYELVRELAATGGVVAVIDARSSISA  321 (965)
T ss_dssp             SSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCCH
T ss_pred             CeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccch
Confidence            4699999999999999999999999999999988754

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=86.69  E-value=0.51  Score=44.14  Aligned_cols=33  Identities=27%  Similarity=0.426  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ..|+|.|+|.-|...+..|.++|++|.++.++.
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~   38 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGWRIIGTSRNP   38 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTCEEEEEESCG
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCEEEEEEcCh
Confidence            369999999999999999999999999998864

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=86.66  E-value=0.88  Score=43.12  Aligned_cols=36  Identities=19%  Similarity=0.074  Sum_probs=30.0

Q ss_pred             CCcccEEEECCC---hhHHHHHHHHhhCCCcEEEEccCC
Q 011414           20 PTAFDLIVIGTG---LPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        20 ~~~~DViIIGaG---l~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      +...-|+|.|++   --|...|..|+++|.+|.+++++.
T Consensus        28 l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~   66 (296)
T 3k31_A           28 MEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSE   66 (296)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             cCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCCh
Confidence            344568999985   678999999999999999999874

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=86.65  E-value=0.46  Score=51.42  Aligned_cols=36  Identities=8%  Similarity=0.153  Sum_probs=32.8

Q ss_pred             ccEEEEC--CChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           23 FDLIVIG--TGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        23 ~DViIIG--aGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      -.|+|||  +|..|+-+|..|++.|.+|+++++.+ +..
T Consensus       529 k~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~-l~~  566 (729)
T 1o94_A          529 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH-LAN  566 (729)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC-TTH
T ss_pred             CeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc-ccc
Confidence            3799998  99999999999999999999999988 543

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=86.63  E-value=0.56  Score=47.96  Aligned_cols=32  Identities=19%  Similarity=0.262  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      +|.|||+|.-|...|..|+++|++|.+++++.
T Consensus         3 kIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~   34 (478)
T 1pgj_A            3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTY   34 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             EEEEEChHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            69999999999999999999999999999863

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=86.58  E-value=0.63  Score=44.82  Aligned_cols=34  Identities=12%  Similarity=0.189  Sum_probs=30.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC--cEEEEccCC
Q 011414           22 AFDLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~--~VlvlE~~~   55 (486)
                      ...|.|||+|..|..+|..|+..|.  +|.++|.+.
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~   42 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   42 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            4689999999999999999999998  899999874

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=86.57  E-value=0.6  Score=45.15  Aligned_cols=33  Identities=24%  Similarity=0.324  Sum_probs=30.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC--cEEEEccC
Q 011414           22 AFDLIVIGTGLPESVISAAASASGK--SVLHLDPN   54 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~--~VlvlE~~   54 (486)
                      ...|.|||+|..|.+.|..|+..|.  +|.++|.+
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~   39 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVN   39 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecc
Confidence            4579999999999999999999997  89999985

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=86.43  E-value=1.4  Score=41.41  Aligned_cols=52  Identities=8%  Similarity=0.052  Sum_probs=40.6

Q ss_pred             chHHHHHHHHHHH-cCcEEEeCCceeEEEEecCCCeEEEEEeC---------CC-----cEEEcCEEEE
Q 011414          279 GELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVRLA---------SG-----QDILSHKLVL  332 (486)
Q Consensus       279 ~~L~qal~r~~~~-~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~---------~G-----~~i~A~~VI~  332 (486)
                      .++.+.+.+.+.. .|.++++++.|++|..+  ++++.+|++.         +|     .+++||.||.
T Consensus       119 ~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~--~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~  185 (284)
T 1rp0_A          119 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVK--GNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVS  185 (284)
T ss_dssp             HHHHHHHHHHHHTSTTEEEEETEEEEEEEEE--TTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhcCCCEEEcCcEEEEEEec--CCeEEEEEEeccccccccCccccCceEEEECCEEEE
Confidence            5677777777765 69999999999999887  6777777753         32     5789999985

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=86.31  E-value=0.6  Score=46.07  Aligned_cols=35  Identities=23%  Similarity=0.247  Sum_probs=31.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCC-cEEEEccCC
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~-~VlvlE~~~   55 (486)
                      .+..|||+|+|-+|..+|..|...|. +|.++|++.
T Consensus       187 ~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G  222 (398)
T 2a9f_A          187 DEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG  222 (398)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             CccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            34579999999999999999999998 999999984

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=86.27  E-value=0.64  Score=44.58  Aligned_cols=33  Identities=21%  Similarity=0.236  Sum_probs=30.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-cEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~-~VlvlE~~~   55 (486)
                      ..|.|||+|..|...|..|+..|+ +|.++|.+.
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~   36 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence            369999999999999999999997 999999874

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=86.26  E-value=0.66  Score=41.54  Aligned_cols=32  Identities=34%  Similarity=0.529  Sum_probs=29.2

Q ss_pred             cEEEECC-ChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           24 DLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        24 DViIIGa-Gl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      .|+|.|| |.-|...+..|.++|++|.++.|+.
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDP   34 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecc
Confidence            4899997 9999999999999999999998863

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=86.24  E-value=0.69  Score=43.37  Aligned_cols=34  Identities=15%  Similarity=0.282  Sum_probs=30.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ...|+|||+|-+|.++|..|++.|.+|.|+.|+.
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~  151 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSS  151 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3479999999999999999999999999998874

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=86.19  E-value=0.42  Score=47.19  Aligned_cols=33  Identities=21%  Similarity=0.295  Sum_probs=30.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCC-------CcEEEEccCCC
Q 011414           24 DLIVIGTGLPESVISAAASASG-------KSVLHLDPNPF   56 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G-------~~VlvlE~~~~   56 (486)
                      .|.|||+|.-|...|..|+++|       ++|.+++++..
T Consensus        23 kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~   62 (375)
T 1yj8_A           23 KISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF   62 (375)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh
Confidence            6999999999999999999999       99999998765

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=86.15  E-value=0.77  Score=44.10  Aligned_cols=34  Identities=24%  Similarity=0.287  Sum_probs=29.6

Q ss_pred             CcccEEEECCC-hhHHHHHHHHhhCCCcEEEEccC
Q 011414           21 TAFDLIVIGTG-LPESVISAAASASGKSVLHLDPN   54 (486)
Q Consensus        21 ~~~DViIIGaG-l~GL~aA~~La~~G~~VlvlE~~   54 (486)
                      ....|+|||+| +.|..+|..|...|.+|++++++
T Consensus       176 ~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~  210 (320)
T 1edz_A          176 YGKKCIVINRSEIVGRPLAALLANDGATVYSVDVN  210 (320)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             CCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCc
Confidence            44679999999 67999999999999999988664

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=86.12  E-value=0.74  Score=43.46  Aligned_cols=34  Identities=21%  Similarity=0.290  Sum_probs=30.7

Q ss_pred             cEEEECC-ChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414           24 DLIVIGT-GLPESVISAAASASGKSVLHLDPNPFY   57 (486)
Q Consensus        24 DViIIGa-Gl~GL~aA~~La~~G~~VlvlE~~~~~   57 (486)
                      .|+|.|| |+-|...+.+|.++|++|.++-|++..
T Consensus         2 kILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~   36 (298)
T 4b4o_A            2 RVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGP   36 (298)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCT
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCc
Confidence            4899997 999999999999999999999887644

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=86.05  E-value=0.67  Score=45.05  Aligned_cols=33  Identities=18%  Similarity=0.091  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ..|.|||+|.-|.+.|..|++.|++|.+.+++.
T Consensus        17 ~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~   49 (338)
T 1np3_A           17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSG   49 (338)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred             CEEEEECchHHHHHHHHHHHHCcCEEEEEECCh
Confidence            359999999999999999999999999999875

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=86.02  E-value=0.47  Score=51.16  Aligned_cols=32  Identities=25%  Similarity=0.396  Sum_probs=30.5

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      .|.|||+|.-|...|..|+++|++|+++|++.
T Consensus       316 kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~  347 (715)
T 1wdk_A          316 QAAVLGAGIMGGGIAYQSASKGTPILMKDINE  347 (715)
T ss_dssp             SEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             EEEEECCChhhHHHHHHHHhCCCEEEEEECCH
Confidence            59999999999999999999999999999875

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=85.99  E-value=0.39  Score=47.87  Aligned_cols=30  Identities=27%  Similarity=0.319  Sum_probs=27.9

Q ss_pred             ccEEEECCChhHHHHHHHHhh-CCCcEEEEc
Q 011414           23 FDLIVIGTGLPESVISAAASA-SGKSVLHLD   52 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~-~G~~VlvlE   52 (486)
                      ..|.|||+|.-|...|..|++ +|++|.+++
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~   33 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLT   33 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEEC
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEe
Confidence            369999999999999999998 599999999

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=85.92  E-value=0.58  Score=47.60  Aligned_cols=34  Identities=12%  Similarity=0.075  Sum_probs=31.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (486)
                      ....|+|||+|-.|...|..|.++|.+|+|++.+
T Consensus        11 ~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~   44 (457)
T 1pjq_A           11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (457)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCC
Confidence            3457999999999999999999999999999985

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=85.86  E-value=0.63  Score=43.74  Aligned_cols=31  Identities=13%  Similarity=0.082  Sum_probs=28.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      .|.|||+|.-|...|..|++ |++|.+++++.
T Consensus         3 ~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~   33 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTF   33 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHHT-TSCEEEECSST
T ss_pred             eEEEEcccHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            58999999999999999999 99999999874

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=85.86  E-value=0.65  Score=45.74  Aligned_cols=34  Identities=21%  Similarity=0.237  Sum_probs=31.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCC-cEEEEccC
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGK-SVLHLDPN   54 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~-~VlvlE~~   54 (486)
                      .+..|+|+|+|-+|..+|..|...|. +|.++|++
T Consensus       191 ~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          191 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            44679999999999999999999998 79999998

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=85.84  E-value=0.6  Score=43.83  Aligned_cols=33  Identities=6%  Similarity=0.139  Sum_probs=30.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ..|+|+|+|-.|..+|..|++.|.+|.|+.|+.
T Consensus       120 ~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~  152 (272)
T 1p77_A          120 QHVLILGAGGATKGVLLPLLQAQQNIVLANRTF  152 (272)
T ss_dssp             CEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            469999999999999999999999999998863

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=85.82  E-value=0.64  Score=48.29  Aligned_cols=35  Identities=20%  Similarity=0.285  Sum_probs=31.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      ...|+|||+|.+|+-.|..|++.|.+|+++++.+.
T Consensus       186 gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~  220 (542)
T 1w4x_A          186 GQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPH  220 (542)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             CCEEEEECCCccHHHHHHHHhhcCceEEEEEcCCc
Confidence            35799999999999999999999999999998654

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=85.78  E-value=1.2  Score=47.06  Aligned_cols=51  Identities=16%  Similarity=0.135  Sum_probs=42.4

Q ss_pred             chHHHHHHHHHHH-cCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE
Q 011414          279 GELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (486)
Q Consensus       279 ~~L~qal~r~~~~-~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~  332 (486)
                      ..+.++|.+.++. .|.++ ++..|+.|..+  ++++++|++.+|.+++|+.||+
T Consensus       124 ~~~~~~L~e~Le~~~GV~I-~~~~V~~L~~e--~g~V~GV~t~dG~~I~Ad~VVL  175 (651)
T 3ces_A          124 VLYRQAVRTALENQPNLMI-FQQAVEDLIVE--NDRVVGAVTQMGLKFRAKAVVL  175 (651)
T ss_dssp             HHHHHHHHHHHHTCTTEEE-EECCEEEEEES--SSBEEEEEETTSEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhCCCCEE-EEEEEEEEEec--CCEEEEEEECCCCEEECCEEEE
Confidence            3577888888777 58888 78899999876  6788899998998999999885

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=85.71  E-value=0.86  Score=43.41  Aligned_cols=33  Identities=15%  Similarity=0.107  Sum_probs=30.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-cEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~-~VlvlE~~~   55 (486)
                      ..|+|||+|-.|..+|..|++.|. +|.|+.|+.
T Consensus       142 ~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~  175 (297)
T 2egg_A          142 KRILVIGAGGGARGIYFSLLSTAAERIDMANRTV  175 (297)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSH
T ss_pred             CEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            469999999999999999999997 999998863

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=85.59  E-value=0.84  Score=44.93  Aligned_cols=52  Identities=13%  Similarity=0.131  Sum_probs=40.5

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEe-CCCc--EEEcCEEEE
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL-ASGQ--DILSHKLVL  332 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~-~~G~--~i~A~~VI~  332 (486)
                      .++.+.|.+.+...|++|++++.|++|..+  ++..+.|++ .+|+  +++||.||.
T Consensus       103 ~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~--~~~~~~v~~~~~g~~~~~~a~~vV~  157 (394)
T 1k0i_A          103 TEVTRDLMEAREACGATTVYQAAEVRLHDL--QGERPYVTFERDGERLRLDCDYIAG  157 (394)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCEEEEEECT--TSSSCEEEEEETTEEEEEECSEEEE
T ss_pred             HHHHHHHHHHHHhcCCeEEeceeEEEEEEe--cCCceEEEEecCCcEEEEEeCEEEE
Confidence            467788888888889999999999999764  222245666 6887  799999984

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=85.58  E-value=0.57  Score=44.86  Aligned_cols=32  Identities=22%  Similarity=0.378  Sum_probs=29.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCC--CcEEEEccCC
Q 011414           24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNP   55 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G--~~VlvlE~~~   55 (486)
                      .|.|||+|..|...|..|+++|  .+|.++|++.
T Consensus         3 kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~   36 (309)
T 1hyh_A            3 KIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (309)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCH
Confidence            6999999999999999999999  7999999874

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=85.49  E-value=0.68  Score=45.76  Aligned_cols=33  Identities=33%  Similarity=0.395  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ..|+|||+|-.|+.+|..|+..|.+|+++|++.
T Consensus       169 ~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~  201 (377)
T 2vhw_A          169 ADVVVIGAGTAGYNAARIANGMGATVTVLDINI  201 (377)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            469999999999999999999999999999874

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=85.43  E-value=0.73  Score=42.66  Aligned_cols=33  Identities=15%  Similarity=0.200  Sum_probs=30.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ..|.|||+|.-|...|..|++.|++|.+++++.
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~   36 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSL   36 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCH
Confidence            469999999999999999999999999999874

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=85.42  E-value=0.62  Score=41.85  Aligned_cols=33  Identities=24%  Similarity=0.376  Sum_probs=30.1

Q ss_pred             ccEEEEC-CChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           23 FDLIVIG-TGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIG-aGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ..|+|.| +|.-|...+..|.++|++|.++.++.
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~   38 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHP   38 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCG
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCc
Confidence            4699999 59999999999999999999999974

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=85.28  E-value=0.65  Score=43.17  Aligned_cols=33  Identities=18%  Similarity=0.218  Sum_probs=30.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCc-EEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKS-VLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~-VlvlE~~~   55 (486)
                      ..|.|||+|.-|...|..|+++|++ |.+++++.
T Consensus        11 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~   44 (266)
T 3d1l_A           11 TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTE   44 (266)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSH
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCH
Confidence            4699999999999999999999999 99999864

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=85.26  E-value=0.74  Score=44.40  Aligned_cols=37  Identities=24%  Similarity=0.339  Sum_probs=31.2

Q ss_pred             CcccEEEECC-ChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414           21 TAFDLIVIGT-GLPESVISAAASASGKSVLHLDPNPFY   57 (486)
Q Consensus        21 ~~~DViIIGa-Gl~GL~aA~~La~~G~~VlvlE~~~~~   57 (486)
                      ...-|+|.|| |.-|...+..|.+.|++|.++.++..-
T Consensus        18 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~   55 (347)
T 4id9_A           18 GSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG   55 (347)
T ss_dssp             ---CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC
Confidence            3456999998 999999999999999999999988643

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=85.16  E-value=0.64  Score=52.33  Aligned_cols=33  Identities=24%  Similarity=0.299  Sum_probs=30.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC-cEEEEccCCC
Q 011414           24 DLIVIGTGLPESVISAAASASGK-SVLHLDPNPF   56 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~-~VlvlE~~~~   56 (486)
                      .|+|||+|..|+-+|..|++.|. +|++++++++
T Consensus       334 ~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~~  367 (1025)
T 1gte_A          334 AVIVLGAGDTAFDCATSALRCGARRVFLVFRKGF  367 (1025)
T ss_dssp             EEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCG
T ss_pred             cEEEECCChHHHHHHHHHHHcCCCEEEEEEecCh
Confidence            79999999999999999999996 8999999873

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=85.02  E-value=1.5  Score=46.23  Aligned_cols=40  Identities=20%  Similarity=0.179  Sum_probs=36.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCC--CcEEEEccCCCCCCC
Q 011414           21 TAFDLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSH   60 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G--~~VlvlE~~~~~GG~   60 (486)
                      .++||||||+|++||+||+.|+++|  .+|+||||....+|.
T Consensus         4 ~~~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~~~~   45 (602)
T 1kf6_A            4 FQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSH   45 (602)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSG
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCCCCh
Confidence            4689999999999999999999999  999999999877664

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=84.98  E-value=0.85  Score=41.97  Aligned_cols=32  Identities=16%  Similarity=0.156  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC----cEEEEccCC
Q 011414           24 DLIVIGTGLPESVISAAASASGK----SVLHLDPNP   55 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~----~VlvlE~~~   55 (486)
                      .|.|||+|.-|...|..|+++|+    +|.+++++.
T Consensus         4 ~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~   39 (247)
T 3gt0_A            4 QIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNT   39 (247)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCH
T ss_pred             eEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCH
Confidence            59999999999999999999998    999999974

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=84.83  E-value=0.62  Score=50.02  Aligned_cols=39  Identities=15%  Similarity=0.121  Sum_probs=35.0

Q ss_pred             ccEEEEC--CChhHHHHHHHHhhCCCcEEEEccCCCCCCCc
Q 011414           23 FDLIVIG--TGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (486)
Q Consensus        23 ~DViIIG--aGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (486)
                      .+|+|||  +|..|+-+|..|++.|.+|+++++.+.+....
T Consensus       524 ~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~  564 (690)
T 3k30_A          524 KKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWT  564 (690)
T ss_dssp             SEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGGG
T ss_pred             CEEEEEcCCCCccHHHHHHHHHhCCCeeEEEeccccccccc
Confidence            3599999  99999999999999999999999998876543

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=84.35  E-value=0.73  Score=43.31  Aligned_cols=34  Identities=18%  Similarity=0.278  Sum_probs=30.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ...|+|||+|-.|...|..|++.|.+|.+++++.
T Consensus       129 ~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~  162 (275)
T 2hk9_A          129 EKSILVLGAGGASRAVIYALVKEGAKVFLWNRTK  162 (275)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSH
T ss_pred             CCEEEEECchHHHHHHHHHHHHcCCEEEEEECCH
Confidence            3469999999999999999999999999999873

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=84.30  E-value=0.7  Score=44.02  Aligned_cols=33  Identities=12%  Similarity=0.183  Sum_probs=27.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      .|-+||-|.-|...|..|.++|++|.+++++..
T Consensus         7 kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~   39 (297)
T 4gbj_A            7 KIAFLGLGNLGTPIAEILLEAGYELVVWNRTAS   39 (297)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEC-----
T ss_pred             cEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            599999999999999999999999999998754

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=84.21  E-value=1.2  Score=41.51  Aligned_cols=32  Identities=22%  Similarity=0.356  Sum_probs=30.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      .+.|||+|-.|...|..|.+.|.+|.+++++.
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~  149 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTP  149 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            79999999999999999999999999999863

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=84.20  E-value=0.86  Score=46.36  Aligned_cols=34  Identities=24%  Similarity=0.234  Sum_probs=31.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ..-|+|+|+|-.|..+|..|+..|.+|++.|+++
T Consensus       265 GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~  298 (488)
T 3ond_A          265 GKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDP  298 (488)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            3469999999999999999999999999999864

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=84.19  E-value=0.75  Score=43.38  Aligned_cols=34  Identities=9%  Similarity=0.175  Sum_probs=30.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhC--CCcEEEEccCC
Q 011414           22 AFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNP   55 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~--G~~VlvlE~~~   55 (486)
                      ...|.|||+|.-|...|..|+++  |++|.+++++.
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   41 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSD   41 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSH
T ss_pred             cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCH
Confidence            34799999999999999999988  68999999864

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=84.18  E-value=0.84  Score=46.27  Aligned_cols=33  Identities=15%  Similarity=0.163  Sum_probs=30.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ..|+|+|+|..|...|..|++.|.+|.+++++.
T Consensus         4 k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~   36 (450)
T 1ff9_A            4 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTL   36 (450)
T ss_dssp             CEEEEECCSTTHHHHHHHHHTTTCEEEEEESSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCcCEEEEEECCH
Confidence            469999999999999999999999999998863

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=84.17  E-value=1.2  Score=42.37  Aligned_cols=35  Identities=20%  Similarity=0.187  Sum_probs=31.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ....|.|||+|-.|..+|..|...|.+|++++++.
T Consensus       156 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~  190 (300)
T 2rir_A          156 HGSQVAVLGLGRTGMTIARTFAALGANVKVGARSS  190 (300)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            34569999999999999999999999999999864

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=84.16  E-value=1.9  Score=44.25  Aligned_cols=53  Identities=19%  Similarity=0.099  Sum_probs=41.8

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCc---EEEcCEEE-ECC
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ---DILSHKLV-LDP  334 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~---~i~A~~VI-~~p  334 (486)
                      ..+-+.|.+.++..|++|+++++|++|..+  ++. +.|++.+|.   +++||.|| ++.
T Consensus       106 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~--~~~-v~v~~~~~~g~~~~~a~~vVgADG  162 (500)
T 2qa1_A          106 SVTETHLEQWATGLGADIRRGHEVLSLTDD--GAG-VTVEVRGPEGKHTLRAAYLVGCDG  162 (500)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETCEEEEEEEE--TTE-EEEEEEETTEEEEEEESEEEECCC
T ss_pred             HHHHHHHHHHHHHCCCEEECCcEEEEEEEc--CCe-EEEEEEcCCCCEEEEeCEEEECCC
Confidence            467788888888899999999999999887  444 356666665   79999998 443

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=84.10  E-value=1.2  Score=45.83  Aligned_cols=56  Identities=18%  Similarity=0.199  Sum_probs=40.6

Q ss_pred             cchHHHHHHHHHHHcC-cEEEeCCceeEEEEecCCCeEEEEEeC--CC-----cEEEcCEEEEC
Q 011414          278 QGELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRLA--SG-----QDILSHKLVLD  333 (486)
Q Consensus       278 ~~~L~qal~r~~~~~G-g~i~l~~~V~~I~~~~~~g~~~gV~~~--~G-----~~i~A~~VI~~  333 (486)
                      -.....++.+.+...| .+|++++.|++|..+++++++++|+..  +|     .+++|+.||+.
T Consensus       220 r~s~~~~~l~~a~~~~n~~i~~~~~V~~i~~~~~g~~~~gV~~~~~~g~~~~~~~v~A~~VIla  283 (504)
T 1n4w_A          220 KQSLDKTYLAAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLFLG  283 (504)
T ss_dssp             BCCTTTTHHHHHHHTTSEEEEESEEEEEEEECTTSSEEEEEEEECTTCCEEEEEEEEEEEEEEC
T ss_pred             ccCHHHHHHHHHHhcCCcEEEeCCEEEEEEECCCCCEEEEEEEeCCCCccceeEEEeeCEEEEc
Confidence            4455566666666676 899999999999987312378999874  56     36889988853

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=84.09  E-value=1.5  Score=41.52  Aligned_cols=47  Identities=17%  Similarity=0.145  Sum_probs=37.3

Q ss_pred             CCCCCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414            8 SELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus         8 ~~~~~~~~~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      .+|....+..+.  ...|.|||.|.-|...|..|+..|.+|+.++++..
T Consensus       110 g~w~~~~~~~l~--g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~  156 (290)
T 3gvx_A          110 GIFRQSPTTLLY--GKALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSV  156 (290)
T ss_dssp             TCCCCCCCCCCT--TCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCC
T ss_pred             cccccCCceeee--cchheeeccCchhHHHHHHHHhhCcEEEEEecccc
Confidence            456554443333  34699999999999999999999999999998754

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=83.97  E-value=2.2  Score=40.72  Aligned_cols=51  Identities=8%  Similarity=-0.016  Sum_probs=40.9

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~  332 (486)
                      .++.+.+.+.++.+|.++++++.|++|..+  ++...+|++.+| ++.+|+||+
T Consensus        76 ~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~--~~~~~~v~~~~g-~~~~d~vV~  126 (357)
T 4a9w_A           76 AEVLAYLAQYEQKYALPVLRPIRVQRVSHF--GERLRVVARDGR-QWLARAVIS  126 (357)
T ss_dssp             HHHHHHHHHHHHHTTCCEECSCCEEEEEEE--TTEEEEEETTSC-EEEEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEEC--CCcEEEEEeCCC-EEEeCEEEE
Confidence            467777778888899999999999999876  554333877676 899999885

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=83.97  E-value=1.2  Score=47.98  Aligned_cols=34  Identities=24%  Similarity=0.298  Sum_probs=31.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      -.|.|||+|..|.-.|..++.+|++|+++|.++.
T Consensus       317 ~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~  350 (742)
T 3zwc_A          317 SSVGVLGLGTMGRGIAISFARVGISVVAVESDPK  350 (742)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCchhcccchHh
Confidence            4699999999999999999999999999998753

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=83.93  E-value=0.81  Score=44.89  Aligned_cols=36  Identities=22%  Similarity=0.230  Sum_probs=28.0

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 011414           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (486)
Q Consensus        18 ~~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (486)
                      ++..+..|+|+|+|..|..+|.+|++ .++|.+.+++
T Consensus        12 ~~g~~mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~   47 (365)
T 3abi_A           12 IEGRHMKVLILGAGNIGRAIAWDLKD-EFDVYIGDVN   47 (365)
T ss_dssp             ----CCEEEEECCSHHHHHHHHHHTT-TSEEEEEESC
T ss_pred             ccCCccEEEEECCCHHHHHHHHHHhc-CCCeEEEEcC
Confidence            44456789999999999999999986 4789988765

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=83.92  E-value=1  Score=42.60  Aligned_cols=31  Identities=6%  Similarity=0.263  Sum_probs=28.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (486)
                      ..|+|+|+|-.|..+|..|++.| +|.++.++
T Consensus       129 k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~  159 (287)
T 1nvt_A          129 KNIVIYGAGGAARAVAFELAKDN-NIIIANRT  159 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHTSSS-EEEEECSS
T ss_pred             CEEEEECchHHHHHHHHHHHHCC-CEEEEECC
Confidence            46999999999999999999999 99999886

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=83.86  E-value=1.8  Score=41.49  Aligned_cols=38  Identities=24%  Similarity=0.232  Sum_probs=33.0

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      +.....|.|||.|.-|...|..|...|.+|++++++..
T Consensus       139 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~  176 (313)
T 2ekl_A          139 ELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDI  176 (313)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcc
Confidence            33445699999999999999999999999999998753

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=83.81  E-value=0.83  Score=40.87  Aligned_cols=32  Identities=13%  Similarity=0.199  Sum_probs=29.6

Q ss_pred             cEEEEC-CChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           24 DLIVIG-TGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        24 DViIIG-aGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      .|+|.| +|.-|...+..|.++|++|.++.|+.
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKV   34 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSG
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            489999 79999999999999999999999875

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=83.75  E-value=1.9  Score=41.27  Aligned_cols=49  Identities=24%  Similarity=0.221  Sum_probs=37.3

Q ss_pred             CCCCCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414            8 SELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus         8 ~~~~~~~~~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      .+|....+...+.....|.|||.|.-|...|..|...|.+|++++++..
T Consensus       128 g~w~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~  176 (307)
T 1wwk_A          128 GVWAKKEAMGIELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPN  176 (307)
T ss_dssp             TCCCTTTCCBCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCCCccCcCCcccCCceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCC
Confidence            3575322233344445699999999999999999999999999998753

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=83.74  E-value=0.83  Score=42.37  Aligned_cols=30  Identities=17%  Similarity=0.169  Sum_probs=27.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEcc
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDP   53 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~   53 (486)
                      .|.|||+|.-|...|..|+++|++|.+.++
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~g~~V~~~~~   31 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLE   31 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCT
T ss_pred             eEEEEechHHHHHHHHHHHHCCCeEEEeCC
Confidence            488999999999999999999999999866

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=83.49  E-value=1  Score=41.69  Aligned_cols=36  Identities=11%  Similarity=0.038  Sum_probs=29.8

Q ss_pred             CCcccEEEECC---ChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           20 PTAFDLIVIGT---GLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        20 ~~~~DViIIGa---Gl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ....-|+|.||   |--|...|..|++.|.+|.++.+++
T Consensus        12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~   50 (271)
T 3ek2_A           12 LDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGD   50 (271)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecch
Confidence            34456899996   3679999999999999999998874

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=83.46  E-value=2  Score=44.07  Aligned_cols=53  Identities=13%  Similarity=0.102  Sum_probs=41.6

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCc---EEEcCEEE-ECC
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ---DILSHKLV-LDP  334 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~---~i~A~~VI-~~p  334 (486)
                      ..+-+.|.+.++..|++|+++++|++|..+  ++. +.|++.+|.   +++||.|| ++.
T Consensus       107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~--~~~-v~v~~~~~~g~~~~~a~~vVgADG  163 (499)
T 2qa2_A          107 STTESVLEEWALGRGAELLRGHTVRALTDE--GDH-VVVEVEGPDGPRSLTTRYVVGCDG  163 (499)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCEEEEEEEC--SSC-EEEEEECSSCEEEEEEEEEEECCC
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEe--CCE-EEEEEEcCCCcEEEEeCEEEEccC
Confidence            467788888888899999999999999876  333 357666765   79999998 443

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=83.28  E-value=1  Score=42.78  Aligned_cols=34  Identities=18%  Similarity=0.158  Sum_probs=31.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ...|.|||+|-.|..+|..|...|.+|++++++.
T Consensus       155 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~  188 (293)
T 3d4o_A          155 GANVAVLGLGRVGMSVARKFAALGAKVKVGARES  188 (293)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            3569999999999999999999999999999864

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=83.27  E-value=1.5  Score=42.28  Aligned_cols=37  Identities=16%  Similarity=0.087  Sum_probs=32.5

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      +.....|.|||.|..|...|..|+..|.+|++++++.
T Consensus       152 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~  188 (330)
T 2gcg_A          152 GLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQ  188 (330)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSS
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            3344579999999999999999999999999999865

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=83.26  E-value=0.77  Score=43.30  Aligned_cols=31  Identities=19%  Similarity=0.201  Sum_probs=28.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      .|.|||+|.-|...|..|++.|++|.+++ +.
T Consensus         5 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~   35 (295)
T 1yb4_A            5 KLGFIGLGIMGSPMAINLARAGHQLHVTT-IG   35 (295)
T ss_dssp             EEEECCCSTTHHHHHHHHHHTTCEEEECC-SS
T ss_pred             EEEEEccCHHHHHHHHHHHhCCCEEEEEc-CH
Confidence            69999999999999999999999999998 54

>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A

Probab=83.25  E-value=1.2  Score=44.13  Aligned_cols=36  Identities=17%  Similarity=0.218  Sum_probs=32.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (486)
                      ...++|+|+|+-+..+|..++..|++|+|+|.++.+
T Consensus       204 ~~rL~IfGAGhva~ala~~a~~lg~~V~v~D~R~~~  239 (386)
T 2we8_A          204 RPRMLVFGAIDFAAAVAQQGAFLGYRVTVCDARPVF  239 (386)
T ss_dssp             CCEEEEECCSTHHHHHHHHHHHTTCEEEEEESCTTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhh
Confidence            357999999999999999999999999999998753

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=83.15  E-value=1.2  Score=43.38  Aligned_cols=35  Identities=23%  Similarity=0.316  Sum_probs=30.4

Q ss_pred             CcccEEEECC-ChhHHHHHHHHhhCCC--cEEEEccCC
Q 011414           21 TAFDLIVIGT-GLPESVISAAASASGK--SVLHLDPNP   55 (486)
Q Consensus        21 ~~~DViIIGa-Gl~GL~aA~~La~~G~--~VlvlE~~~   55 (486)
                      ....|.|||+ |..|+++|..|+..|.  +|.++|.+.
T Consensus         7 ~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~   44 (343)
T 3fi9_A            7 TEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFA   44 (343)
T ss_dssp             CSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            4467999998 9999999999999995  899999853

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=83.07  E-value=1.6  Score=40.26  Aligned_cols=34  Identities=21%  Similarity=0.153  Sum_probs=29.4

Q ss_pred             cccEEEECC-Ch-hHHHHHHHHhhCCCcEEEEccCC
Q 011414           22 AFDLIVIGT-GL-PESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        22 ~~DViIIGa-Gl-~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ..-|+|.|+ |- -|...|..|+++|++|++++++.
T Consensus        22 ~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~   57 (266)
T 3o38_A           22 GKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHE   57 (266)
T ss_dssp             TCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCH
Confidence            345899998 74 89999999999999999998863

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=82.99  E-value=0.79  Score=45.32  Aligned_cols=40  Identities=23%  Similarity=0.254  Sum_probs=35.3

Q ss_pred             cccEEEECC-ChhHHHHHHHHhhCCC---cEEEEccCC-CCCCCc
Q 011414           22 AFDLIVIGT-GLPESVISAAASASGK---SVLHLDPNP-FYGSHF   61 (486)
Q Consensus        22 ~~DViIIGa-Gl~GL~aA~~La~~G~---~VlvlE~~~-~~GG~~   61 (486)
                      ...|+|||+ |..|+.|+..+..-|.   +|.++|.+. .-||..
T Consensus       214 ~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~~g~~~  258 (394)
T 2qrj_A          214 KPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETSRGGPF  258 (394)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHTTCSCC
T ss_pred             CCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeeccccccCCch
Confidence            458999999 9999999999999997   999999986 557763

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=82.98  E-value=2  Score=41.63  Aligned_cols=37  Identities=16%  Similarity=0.087  Sum_probs=32.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      .....|.|||.|..|...|..|+..|.+|++++++..
T Consensus       148 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~  184 (334)
T 2dbq_A          148 VYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRK  184 (334)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCCCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcc
Confidence            3445699999999999999999999999999998764

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=82.86  E-value=0.93  Score=43.12  Aligned_cols=32  Identities=16%  Similarity=0.101  Sum_probs=29.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--cEEEEccCC
Q 011414           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~--~VlvlE~~~   55 (486)
                      .|.|||+|..|.+.|..|++.|.  +|.++|.+.
T Consensus         2 kI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~   35 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCh
Confidence            58999999999999999999998  899999875

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=82.86  E-value=1.1  Score=43.31  Aligned_cols=36  Identities=11%  Similarity=0.196  Sum_probs=30.8

Q ss_pred             CCcccEEEECC-ChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           20 PTAFDLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        20 ~~~~DViIIGa-Gl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      |....|+|+|| |.-|...+..|.+.|++|.++.|+.
T Consensus         8 M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~   44 (346)
T 3i6i_A            8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPG   44 (346)
T ss_dssp             ---CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence            33457999998 9999999999999999999999975

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=82.84  E-value=0.97  Score=45.87  Aligned_cols=35  Identities=17%  Similarity=0.177  Sum_probs=30.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhC--------------------C-CcEEEEccCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASAS--------------------G-KSVLHLDPNPFY   57 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~--------------------G-~~VlvlE~~~~~   57 (486)
                      -.|+|||+|..|+-+|..|++.                    | .+|.++++++.+
T Consensus       148 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~  203 (456)
T 1lqt_A          148 ARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPL  203 (456)
T ss_dssp             SEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGG
T ss_pred             CEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChh
Confidence            4799999999999999999974                    6 599999998654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	486
d1vg0a1	491	c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {	7e-68
d1vg0a1	491	c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {	2e-20
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	3e-28
d1vg0a2	113	d.16.1.6 (A:445-557) Rab escort protein 1 {Rat (Ra	3e-21
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	6e-19
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	4e-04

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 491

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  223 bits (569), Expect = 7e-68
 Identities = 90/356 (25%), Positives = 141/356 (39%), Gaps = 48/356 (13%)

Query: 62  SSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCA 121
                +D        S       D   +  +     S+++ +  R FN+D+   ++L+  
Sbjct: 177 GKKENSDAKSSTEEPSENVPKVQDNTETPKKNRITYSQIIKEG-RRFNIDLV-SKLLYSR 234

Query: 122 DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRF 181
              +DL++KS  S Y EFK+I        +  +  VP SRA +F  K L ++EK  LM+F
Sbjct: 235 GLLIDLLIKSNVSRYAEFKNITRILAFR-EGTVEQVPCSRADVFNSKQLTMVEKRMLMKF 293

Query: 182 FKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVS 241
                 +       E +         + F+E+L   KL   ++  VL++IAM        
Sbjct: 294 LTFCVEY-------EEHPDEYRAYEGTTFSEYLKTQKLTPNLQYFVLHSIAMTSETTS-- 344

Query: 242 EYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMP 301
                T DG+     +   +GR+ N     ++P+YGQGELPQ FCR  AV G +Y LR  
Sbjct: 345 ----CTVDGLKATKKFLQCLGRYGNT--PFLFPLYGQGELPQCFCRMCAVFGGIYCLRHS 398

Query: 302 VISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDN 361
           V  L+ D+ S   K V    GQ I+S   +++ S+    +                    
Sbjct: 399 VQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSENTC------------------- 439

Query: 362 KGKVARGICITRSSLKPDLSNFLVIFPPRSLFPE----QVTSIRVLQLGGNLAVCP 413
             +V+R  C          SN  V   P S        +       Q+  N   CP
Sbjct: 440 -SRVSR-DCYNDLP-----SNVYVCSGPDSGLGNDNAVKQAETLFQQICPNEDFCP 488

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 491

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 92.1 bits (228), Expect = 2e-20
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTP 79
          P+ FD+IVIGTGLPES+I+AA S SG+ VLH+D   +YG +++S S + L  +L  +   
Sbjct: 4  PSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQEN 63

Query: 80 SSVCPDPLYSDVEI 93
          + V  +      +I
Sbjct: 64 NDVVTENSMWQEQI 77

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  111 bits (277), Expect = 3e-28
 Identities = 71/319 (22%), Positives = 145/319 (45%), Gaps = 28/319 (8%)

Query: 21  TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPS 80
           T +D+IV+GTG+ E ++S   S  GK VLH+D    YG   +S++++ L      +    
Sbjct: 4   TDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISK 63

Query: 81  SVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFK 140
                                    R++N+D+  P+ L       ++++ +  + Y++FK
Sbjct: 64  EERESKFG---------------KDRDWNVDLI-PKFLMANGELTNILIHTDVTRYVDFK 107

Query: 141 SIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVR 200
            +  +++     K+  VP +         +G+ EK ++ +F + +  +    + ++ +  
Sbjct: 108 QVSGSYVFKQG-KIYKVPANEIEAISSPLMGIFEKRRMKKFLEWISSY----KEDDLSTH 162

Query: 201 ISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260
              +   +   E   K  L +  K  + +A+A+   D  + +     R    R+ LY  S
Sbjct: 163 QGLDLDKNTMDEVYYKFGLGNSTKEFIGHAMALWTNDDYLQQP---ARPSFERILLYCQS 219

Query: 261 IGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320
           + R+       +YP+YG GELPQ F R +A+ G  Y+L  P+  +L  +++G ++GV+  
Sbjct: 220 VARYGK--SPYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVK-T 276

Query: 321 SGQDILSHKLVLDPSFTVP 339
                 +  ++ DP++  P
Sbjct: 277 KLGTFKAPLVIADPTY-FP 294

>d1vg0a2 d.16.1.6 (A:445-557) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 113

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GDI-like
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 86.4 bits (214), Expect = 3e-21
 Identities = 18/114 (15%), Positives = 46/114 (40%), Gaps = 10/114 (8%)

Query: 364 KVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSA 423
           +++R + IT  S+    ++  V             ++RV++L  +   C  G ++++ + 
Sbjct: 4   QISRAVLITDGSVLRTDADQQVSILTVPAEEPGSFAVRVIELCSSTMTCMKGTYLVHLTC 63

Query: 424 LCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEEAKPTLLWSALYIQ 477
           +       ++ L   +  L            +  ++E+ +  KP LLW+  +  
Sbjct: 64  MSS--KTAREDLERVVQKL--------FTPYTEIEAENEQVEKPRLLWALYFNM 107

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 85.7 bits (210), Expect = 6e-19
 Identities = 80/322 (24%), Positives = 137/322 (42%), Gaps = 33/322 (10%)

Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
           +D+IV+GTGL E ++S   S +GK VLH+D NP+YG   SS++  +  +           
Sbjct: 7   YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQL------ 60

Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
                              +            P+ L      V ++L +  + YL+FK +
Sbjct: 61  -------------LEGPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVV 107

Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
           + +F+     K+  VP +         +G+ EK +  +F   V      D      V   
Sbjct: 108 EGSFVYKGG-KIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVD-- 164

Query: 203 EEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIG 262
               ++   +   K  L   +     +A+A+   D  + +  L   + INR+ LY+ S+ 
Sbjct: 165 --PQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCL---ETINRIKLYSESLA 219

Query: 263 RFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG 322
           R+       +YP+YG GELPQ F R +A+ G  Y+L  PV  ++ +       GV  + G
Sbjct: 220 RYGK--SPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIMENG--KVVGV-KSEG 274

Query: 323 QDILSHKLVLDPSFTVPGSLAS 344
           +     +L+ DPS+ VP  +  
Sbjct: 275 EVARCKQLICDPSY-VPDRVPI 295

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 40.0 bits (92), Expect = 4e-04
 Identities = 22/127 (17%), Positives = 43/127 (33%), Gaps = 8/127 (6%)

Query: 4   NESESELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHF 61
           ++SE +  +   P       D++V+G+G   +  SAA SA+  G  V+ ++  P  G + 
Sbjct: 1   DKSERQAALASAPHDT---VDVVVVGSGG--AGFSAAISATDSGAKVILIEKEPVIGGN- 54

Query: 62  SSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCA 121
           + L+   +            +   P     +       +            S   V +  
Sbjct: 55  AKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDPALVKVLSSHSKDSVDWMT 114

Query: 122 DHAVDLM 128
               DL 
Sbjct: 115 AMGADLT 121

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	486
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	100.0
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	100.0
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.96
d1vg0a2	113	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	99.88
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.86
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.79
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.75
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	99.62
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	99.47
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.41
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.4
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	99.37
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	99.37
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	99.36
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.33
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.27
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.23
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.18
d1d5ta2	97	Guanine nucleotide dissociation inhibitor, GDI {Co	99.08
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.07
d2bcgg3	98	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.05
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.82
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.79
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.77
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.77
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.74
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	98.72
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.69
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.69
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	98.65
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.64
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	98.64
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.63
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	98.62
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	98.58
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.57
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.56
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.52
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.5
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.49
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.49
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.48
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.45
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.44
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	98.44
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	98.44
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.43
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.42
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.4
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.39
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	98.39
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.38
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	98.36
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	98.34
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.33
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.31
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	98.31
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	98.29
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	98.25
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	98.25
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.22
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.2
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	98.14
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	98.12
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	98.08
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	97.97
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	97.66
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	97.64
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	97.58
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	97.53
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	97.52
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	97.5
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.49
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	97.47
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	97.44
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	97.41
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	97.27
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	97.24
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	97.2
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	97.17
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	97.09
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	96.9
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	96.9
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	96.89
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	96.87
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	96.85
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	96.8
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.8
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	96.66
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	96.63
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	96.63
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.47
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.45
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	96.31
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	96.27
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.26
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.2
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	96.15
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	96.14
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	96.14
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	96.13
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	96.13
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	96.09
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	96.07
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	95.88
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	95.8
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	95.77
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	95.75
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	95.22
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	95.22
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	95.14
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	95.13
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	95.11
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	95.06
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	94.99
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	94.61
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	94.55
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	94.08
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	94.06
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	94.06
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	93.78
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	93.69
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	93.67
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	93.48
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	93.47
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	93.44
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	93.05
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	93.01
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	92.72
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	92.62
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	92.29
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	92.15
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	92.12
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	91.97
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	91.87
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	91.84
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	91.8
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	91.77
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	91.69
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	91.36
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	91.34
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	91.0
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	90.96
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	90.7
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	90.59
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	90.45
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	90.24
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	90.14
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	90.02
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	89.98
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	89.9
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	89.8
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	89.51
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	89.45
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	89.43
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	89.24
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	88.45
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	88.36
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	88.32
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	88.31
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	88.1
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	88.01
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	87.48
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	87.48
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	87.07
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	86.85
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	86.78
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	86.64
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	86.61
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	86.5
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	86.5
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	86.2
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	85.55
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	85.44
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	85.4
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	85.21
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	84.91
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	84.7
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	84.66
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	84.6
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	84.09
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	83.69
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	83.5
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	83.14
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	83.09
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	83.01
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	82.89
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	82.38
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	81.64
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	81.57
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	80.98
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	80.85
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	80.72
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	80.4
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	80.22
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	80.08

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=4.2e-56  Score=450.52  Aligned_cols=301  Identities=36%  Similarity=0.608  Sum_probs=251.2

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCC---------------
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCP---------------   84 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~---------------   84 (486)
                      +++|||||+||||.++++|++|||.|+||||+|+|++|||.++||+++++.+|+...........               
T Consensus         4 P~e~DVII~GTGL~ESILAaAlSr~GkkVLHiD~N~yYGg~~aSl~~~~L~~w~~~~~~~~~~~~~~~~~~~~~~e~e~~   83 (491)
T d1vg0a1           4 PSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQENNDVVTENSMWQEQILENEEA   83 (491)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHHHTC----------CGGGGCCTTEEE
T ss_pred             CCccCEEEECCChHHHHHHHHHHhcCCEEEEecCCCcCCCcccceeHHHHHHHHHhhhcccccccccccccccccccchh
Confidence            57899999999999999999999999999999999999999999999999999975543210000               


Q ss_pred             ------CCcccccccccc--------------------------------------------------------------
Q 011414           85 ------DPLYSDVEISNY--------------------------------------------------------------   96 (486)
Q Consensus        85 ------~~~~~~~~~~~~--------------------------------------------------------------   96 (486)
                            .....+++..++                                                              
T Consensus        84 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  163 (491)
T d1vg0a1          84 IPLSSKDKTIQHVEVFCYASQDLHKDVEEAGALQKNHASVTSAQSAEAAEAAETSCLPTAVEPLSMGSCEIPAEQSQCPG  163 (491)
T ss_dssp             EEBCSSCCCEEEEEEEECSCC-----------------------------------------------------------
T ss_pred             cccccccccccccceeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccC
Confidence                  000000000000                                                              


Q ss_pred             -----------------------------------------------ccccccCCCCceEeecCCCEEEecChHHHHHHH
Q 011414           97 -----------------------------------------------ASRLLSQHPRNFNLDVSGPRVLFCADHAVDLML  129 (486)
Q Consensus        97 -----------------------------------------------~~~~~~~~~~~~~idl~Gp~ll~~~~~l~~~l~  129 (486)
                                                                     ..+.+.+..|+|+|||. |++++++|.++++|+
T Consensus       164 ~e~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~r~~niDL~-Pk~l~a~g~lv~~Li  242 (491)
T d1vg0a1         164 PESSPEVNDAEATGKKENSDAKSSTEEPSENVPKVQDNTETPKKNRITYSQIIKEGRRFNIDLV-SKLLYSRGLLIDLLI  242 (491)
T ss_dssp             ---------------------------------------------CCCHHHHHHTGGGCCEESS-CCCEESSSHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccc-chheecccHHHHHHH
Confidence                                                           00011234699999997 999999999999999


Q ss_pred             hcCcccccchhcccceeeeccCCceeecCCCHHHHhhcccCChHhHHHHHHHHHHHHhhcccCccccccccccccccCCc
Q 011414          130 KSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSP  209 (486)
Q Consensus       130 ~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s~~~~f~~~~l~~~~k~~l~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s  209 (486)
                      ++++.+|+||+.+++.|+|. +|++.+||+++.++|+++.+++.+||+||||++++..+... +      +....+.+.|
T Consensus       243 ~S~v~rYlEFk~v~~~~v~~-~g~~~~VP~sr~eif~s~~l~l~eKR~lmkFl~~v~~~~~~-~------~~~~~~~~~~  314 (491)
T d1vg0a1         243 KSNVSRYAEFKNITRILAFR-EGTVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCVEYEEH-P------DEYRAYEGTT  314 (491)
T ss_dssp             HHTGGGGCCEEECCEEEEES-SSSEEECCCSHHHHHHCSSSCHHHHHHHHHHHHHHHTGGGC-H------HHHHTTTTSB
T ss_pred             HcChhhheeEEEeceEEEec-CCeEEECCCCHHHHhcCCCCCHHHHHHHHHHHHHHhhccCC-c------cccccccCCc
Confidence            99999999999999999886 89999999999999999999999999999999999887531 1      1123456789


Q ss_pred             HHHHHHhcCCChHHHHHHHHHHhhccCCchhhhhhhchhhHHHHHHHHHHhhhcccCCCcceEeecCCcchHHHHHHHHH
Q 011414          210 FAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRA  289 (486)
Q Consensus       210 ~~~~l~~~~l~~~l~~~l~~~i~~~~~~~~~~~~~~s~~~~l~~~~~~~~s~g~~g~~~g~~~~p~gG~~~L~qal~r~~  289 (486)
                      |.+||+++++++.+++++.|+++|.....      .++.+++.++++|+.|+|+||++  +|+||+||.|+|+|+|||++
T Consensus       315 ~~e~l~~~~l~~~~~~~i~~aial~~~~~------~~~~~~l~ri~~yl~Slg~yG~s--pflyp~YG~gEipQ~FcR~~  386 (491)
T d1vg0a1         315 FSEYLKTQKLTPNLQYFVLHSIAMTSETT------SCTVDGLKATKKFLQCLGRYGNT--PFLFPLYGQGELPQCFCRMC  386 (491)
T ss_dssp             HHHHHTTSSSCHHHHHHHHHHTTC--CCS------CBHHHHHHHHHHHHHHTTSSSSS--SEEEETTCTTHHHHHHHHHH
T ss_pred             HHHHHHHcCCChHHHHHHHhheeccCCCC------ccHHHHHHHHHHHHHHHHhhCCC--CeEeecCCcchHHHHHHHHH
Confidence            99999999999999999999999864322      36788999999999999999975  49999999999999999999


Q ss_pred             HHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEECCCCC
Q 011414          290 AVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFT  337 (486)
Q Consensus       290 ~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~p~~~  337 (486)
                      ++.||+|+||++|++|.++++++++.+|++++|++++|++||++|.|.
T Consensus       387 AV~Gg~Y~L~~~i~~i~~d~e~~~~~~v~~~~g~~i~~k~vI~~psy~  434 (491)
T d1vg0a1         387 AVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYL  434 (491)
T ss_dssp             HHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGGGB
T ss_pred             HhcCcEEEcCCccceEEEecCCCeEEEEEccCCcEEecCeEEECHHhC
Confidence            999999999999999999766888889999999999999999999886

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.7e-37  Score=292.79  Aligned_cols=292  Identities=25%  Similarity=0.498  Sum_probs=226.1

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCcccccccccccc
Q 011414           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS   98 (486)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (486)
                      |+++|||||||||++||+||++||++|++|+||||++++||+++|++++++..++......         . ..     .
T Consensus         2 m~~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~---------~-~~-----~   66 (297)
T d2bcgg1           2 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPIS---------K-EE-----R   66 (297)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHCSSCCC---------H-HH-----H
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCcceEEeeccccccccCCCccc---------c-cc-----c
Confidence            5689999999999999999999999999999999999999999999987754444322110         0 00     0


Q ss_pred             ccccCCCCceEeecCCCEEEecChHHHHHHHhcCcccccchhcccceeeeccCCceeecCCCHHHHhhcccCChHhHHHH
Q 011414           99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (486)
Q Consensus        99 ~~~~~~~~~~~idl~Gp~ll~~~~~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s~~~~f~~~~l~~~~k~~l  178 (486)
                      .........|++|+. |++++..+.+.+.+.+.+...+.+|+.+++.+++. ++...++|.+..+++.....+..+++.+
T Consensus        67 ~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (297)
T d2bcgg1          67 ESKFGKDRDWNVDLI-PKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFK-QGKIYKVPANEIEAISSPLMGIFEKRRM  144 (297)
T ss_dssp             HHHHCCGGGCCEESS-CCBEETTSHHHHHHHHHTGGGTCCEEECCCEEEEE-TTEEEECCSSHHHHHHCTTSCHHHHHHH
T ss_pred             cccccccccceeccC-cccccCCCcceeeeeeccccccccccccCcccccc-cCCccccccchhhhhhccccccccchhh
Confidence            001123457889995 99999999999999999999999999998888764 7889999999999998888888899999


Q ss_pred             HHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChHHHHHHHHHHhhccCCchhhhhhhchhhHHHHHHHHH
Q 011414          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN  258 (486)
Q Consensus       179 ~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~l~~~i~~~~~~~~~~~~~~s~~~~l~~~~~~~  258 (486)
                      ++|...+..+......    ..........++.++++++++++.++.++.+.+.+......   ...++...+.++..+.
T Consensus       145 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  217 (297)
T d2bcgg1         145 KKFLEWISSYKEDDLS----THQGLDLDKNTMDEVYYKFGLGNSTKEFIGHAMALWTNDDY---LQQPARPSFERILLYC  217 (297)
T ss_dssp             HHHHHHHHHCBTTBGG----GSTTCCTTTSBHHHHHHHTTCCHHHHHHHHHHTSCCSSSGG---GGSBHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhcccc----chhhhcccchhhhhhhhhhccCHHHHHHHHHHHhhhccccc---cchhhhhhhhhhhhhh
Confidence            8888777655321110    00112344578999999999999999887765544322111   1235556667777777


Q ss_pred             HhhhcccCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEECCCCC
Q 011414          259 SSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFT  337 (486)
Q Consensus       259 ~s~g~~g~~~g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~p~~~  337 (486)
                      .+...+..  +++.||+||+++|+++|++.++.+|++|++|++|++|..+++++++++|+ ++|++++||+||++|+|+
T Consensus       218 ~~~~~~~~--~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v~-~~g~~~~ad~VI~~~s~~  293 (297)
T d2bcgg1         218 QSVARYGK--SPYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVK-TKLGTFKAPLVIADPTYF  293 (297)
T ss_dssp             HHHHHHSS--CSEEEETTCTTHHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEE-ETTEEEECSCEEECGGGC
T ss_pred             hccccccc--CcceeccCcHHHHHHHHHHHHHhcCCEEEeCCEeeEEEEECCCCEEEEEE-cCCEEEECCEEEEChhhc
Confidence            77766554  33889999999999999999999999999999999998875567777775 689999999999999876

>d1vg0a2 d.16.1.6 (A:445-557) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GDI-like
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=3.1e-22  Score=161.87  Aligned_cols=110  Identities=17%  Similarity=0.291  Sum_probs=82.6

Q ss_pred             cceEEEEEEEecCCCCCCCC--ceEEEeCCCCCCCCCCceEEEEEeCCCCccCCCCeEEEEEEEeeccCcchHHHHHHHH
Q 011414          362 KGKVARGICITRSSLKPDLS--NFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAAL  439 (486)
Q Consensus       362 ~~~v~r~i~i~~~~~~~~~~--~~~~~~p~~~~~~~~~~~v~v~~~~~~~~~~P~G~~vi~~~t~~~~~~~~~~~l~~~~  439 (486)
                      +.+++|+|||+++|+.+..+  ...+++||...+  ..++||++++|++++.||+|+||+|+||..  .++++++|++++
T Consensus         2 ~~~V~RaI~I~d~si~~~~~~~~v~ii~~p~~~~--~~~~v~vl~~ss~~~vCP~G~yv~~~St~~--t~~~~~~L~~a~   77 (113)
T d1vg0a2           2 YRQISRAVLITDGSVLRTDADQQVSILTVPAEEP--GSFAVRVIELCSSTMTCMKGTYLVHLTCMS--SKTAREDLERVV   77 (113)
T ss_dssp             CEEEEEEEEEESSCSSCCSCCCCCEEEEECCSST--TSCCEEEEEECGGGTSSCTTCEEEEEEEEC--SSCHHHHHHHHH
T ss_pred             cEEEEEEEEEECCCCCCCCCCccEEEeecCcccC--CCCCEEEEEecCCcccCCCCCEEEEEEEcC--CCCHHHHHHHHH
Confidence            45799999999999876432  344444444322  368999999999999999999999999864  358999999999


Q ss_pred             HHHHhhhhcCCCCCCCCccccccccCCcceEeEEeEEeecCccc
Q 011414          440 SALQKLLVTGTAGNSSTAQSEDMEEAKPTLLWSALYIQDLSLSH  483 (486)
Q Consensus       440 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  483 (486)
                      ++||+..        .+..+++.+..+|++|||+||||.+++|+
T Consensus        78 ~~Ll~~~--------~e~~~~~~~~~kP~iLWslyf~~~d~s~~  113 (113)
T d1vg0a2          78 QKLFTPY--------TEIEAENEQVEKPRLLWALYFNMRDSSDI  113 (113)
T ss_dssp             HHHCBSC--------SCCC-------CCBEEEEEEEEEEECTTC
T ss_pred             HHhhCcc--------ccccccccccCCCeEEEEEEEcCCCCCCC
Confidence            9999732        23344444678999999999999999874

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=7.8e-21  Score=186.93  Aligned_cols=274  Identities=13%  Similarity=0.075  Sum_probs=150.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCccccccccccccccccC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ  103 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (486)
                      ||||||||++||+||..|+++|++|+||||++++||++.|+...+                                   
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~GGr~~t~~~~~-----------------------------------   45 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQK-----------------------------------   45 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSSBTTCCEECCTT-----------------------------------
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcceeeEEECCC-----------------------------------
Confidence            899999999999999999999999999999999999999875321                                   


Q ss_pred             CCCceEeecCCCEEEecCh-HHHHHHHhcCcccccchhcccceeeeccCCceeecCCCHHHHhhcccCChHhHHHHHHHH
Q 011414          104 HPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFF  182 (486)
Q Consensus       104 ~~~~~~idl~Gp~ll~~~~-~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s~~~~f~~~~l~~~~k~~l~~fl  182 (486)
                         .+.+|+ |++++.... .+.+++.+.|+..+... .... ..+..+...........     .............+.
T Consensus        46 ---g~~~d~-G~~~~~~~~~~~~~l~~~lgl~~~~~~-~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~  114 (383)
T d2v5za1          46 ---VKYVDL-GGSYVGPTQNRILRLAKELGLETYKVN-EVER-LIHHVKGKSYPFRGPFP-----PVWNPITYLDHNNFW  114 (383)
T ss_dssp             ---TSCEES-SCCEECTTCHHHHHHHHHTTCCEEECC-CSSE-EEEEETTEEEEECSSSC-----CCCSHHHHHHHHHHH
T ss_pred             ---CcEEeC-CceEeCCCChHHHHHHHHcCCcceecc-Cccc-eEEecCccccccccccc-----chhhhhhhhhHHHHH
Confidence               233566 577775443 56777888876543211 1111 11111222222111100     011111111222222


Q ss_pred             HHHHhhcccCcc-ccccccccccccCCcHHHHHHhcCCChHHHHHHHHHH-hhccCCchhhhhhhchhhHHHHHHHHHHh
Q 011414          183 KLVQGHLSLDES-EENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAI-AMADYDQEVSEYVLKTRDGINRLALYNSS  260 (486)
Q Consensus       183 ~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~l~~~i-~~~~~~~~~~~~~~s~~~~l~~~~~~~~s  260 (486)
                      ............ .........+....++.+++++....+....+..... ........    ..+....+.........
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~  190 (383)
T d2v5za1         115 RTMDDMGREIPSDAPWKAPLAEEWDNMTMKELLDKLCWTESAKQLATLFVNLCVTAETH----EVSALWFLWYVKQCGGT  190 (383)
T ss_dssp             HHHHHHHTTSCTTCGGGSTTHHHHHTSBHHHHHHHHCSSHHHHHHHHHHHHHHHSSCTT----TSBHHHHHHHHHTTTCH
T ss_pred             HHHHHhhhhcccccccchhhhhhhhhhHHHHHHHHhccchHHHHHHHHhhhhhhccccc----hhhHHHHHHHHHhhccc
Confidence            222111110000 0001111234456789999998887776665443211 11111111    11222222221111100


Q ss_pred             hhccc-CCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC-CCCCC
Q 011414          261 IGRFQ-NALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTV  338 (486)
Q Consensus       261 ~g~~g-~~~g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~-p~~~~  338 (486)
                      ..... ...+....+.+|++.++++++   +..|++|++|++|++|..+  +++ +.|++.+|++++||+||++ |...+
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~g~~i~~~~~v~~I~~~--~~~-v~v~~~~g~~~~ad~vI~a~p~~~~  264 (383)
T d2v5za1         191 TRIISTTNGGQERKFVGGSGQVSERIM---DLLGDRVKLERPVIYIDQT--REN-VLVETLNHEMYEAKYVISAIPPTLG  264 (383)
T ss_dssp             HHHHCSTTSTTSEEETTCTHHHHHHHH---HHHGGGEEESCCEEEEECS--SSS-EEEEETTSCEEEESEEEECSCGGGG
T ss_pred             ccccccccCcceeeeccchhHHHHHHH---HHcCCeEEecCcceEEEec--CCe-EEEEECCCCEEECCEEEECCCHHHH
Confidence            00001 111224578899999998764   5789999999999999876  444 4688999999999999975 43333


Q ss_pred             CCCCcccchhhhhhhhh
Q 011414          339 PGSLASSHQQLQESFQA  355 (486)
Q Consensus       339 ~~l~~~~~~~l~~~~~~  355 (486)
                      .++  .++|++|..+..
T Consensus       265 ~~~--~~~p~l~~~~~~  279 (383)
T d2v5za1         265 MKI--HFNPPLPMMRNQ  279 (383)
T ss_dssp             GGS--EEESCCCHHHHH
T ss_pred             hhC--ccCCCCCHHHHH
Confidence            333  245556554433

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.79  E-value=1.4e-18  Score=166.52  Aligned_cols=45  Identities=16%  Similarity=0.378  Sum_probs=42.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchh
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIA   67 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~   67 (486)
                      .||+|||||++||+||++|+++|++|+||||++++||+++|+..+
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~   45 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALA   45 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEEEET
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCceEEEEeeC
Confidence            489999999999999999999999999999999999999998654

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.75  E-value=1e-17  Score=162.92  Aligned_cols=263  Identities=13%  Similarity=0.112  Sum_probs=134.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCccccccccccccccc
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL  101 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (486)
                      ..+|||||||++||+||.+|+++|++|+|||+++++||++.|+..+.                                 
T Consensus        30 pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~---------------------------------   76 (370)
T d2iida1          30 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEE---------------------------------   76 (370)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEETT---------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCeeEEEecCC---------------------------------
Confidence            35899999999999999999999999999999999999999876432                                 


Q ss_pred             cCCCCceEeecCCCEEEecCh-HHHHHHHhcCcccccchhcc-cceeeeccCCceeecCCCHH--HHhhc----ccCChH
Q 011414          102 SQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSI-DATFMLDADAKLCSVPDSRA--AIFKD----KSLGLM  173 (486)
Q Consensus       102 ~~~~~~~~idl~Gp~ll~~~~-~l~~~l~~~~~~~y~ef~~~-~~~~~~~~~g~~~~vp~s~~--~~f~~----~~l~~~  173 (486)
                          ..+.+|. |++++.... .+.+++.+.+.... ++... ...+++. ++..........  .....    ......
T Consensus        77 ----~g~~~d~-G~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (370)
T d2iida1          77 ----AGWYANL-GPMRLPEKHRIVREYIRKFDLRLN-EFSQENDNAWYFI-KNIRKKVGEVKKDPGLLKYPVKPSEAGKS  149 (370)
T ss_dssp             ----TTEEEES-SCCCEETTCHHHHHHHHHTTCCEE-EECSCCTTSEEEE-TTEEEEHHHHHHCGGGGCCCCCGGGTTCC
T ss_pred             ----CCceecc-CceeecCccHHHHHHHHHhCCccc-eeeccCCceEEec-CCccccchhhhhhhhhhhhhhhhhhhhhh
Confidence                2355566 466654443 44555665554321 11111 1112221 222111100000  00000    000000


Q ss_pred             hHHH----HHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhc-CCChHHHHHHHHHHhhccCCchhhhhhhchh
Q 011414          174 EKNQ----LMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKM-KLPHKIKSIVLYAIAMADYDQEVSEYVLKTR  248 (486)
Q Consensus       174 ~k~~----l~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~-~l~~~l~~~l~~~i~~~~~~~~~~~~~~s~~  248 (486)
                      ....    +.++...+....        ...........+..+++... ...+.....+.......  . .   ...+. 
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~---~~~~~-  214 (370)
T d2iida1         150 AGQLYEESLGKVVEELKRTN--------CSYILNKYDTYSTKEYLIKEGDLSPGAVDMIGDLLNED--S-G---YYVSF-  214 (370)
T ss_dssp             HHHHHHHHTHHHHHHHHHSC--------HHHHHHHHTTSBHHHHHHHTSCCCHHHHHHHHHHTTCG--G-G---TTSBH-
T ss_pred             hHHHHHHHHHHHHHHHHhhh--------hhhhhhhccchhHHHHHHHhccccHHHHHHhhcccccc--c-h---hhhHH-
Confidence            0011    111111111110        00001123345667777653 34444444332211110  0 0   00111 


Q ss_pred             hHHHHHHHHHHhhhcccCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEE-EEEe--CCCcEE
Q 011414          249 DGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYK-GVRL--ASGQDI  325 (486)
Q Consensus       249 ~~l~~~~~~~~s~g~~g~~~g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~-gV~~--~~G~~i  325 (486)
                        +... ....... ..   +.+.++.+|++.|+++|.   +..|+.++++++|++|..+  ++++. .+..  .+++++
T Consensus       215 --~~~~-~~~~~~~-~~---~~~~~~~~~~~~l~~~l~---~~~g~~i~~~~~V~~I~~~--~~~v~v~~~~~~~~~~~~  282 (370)
T d2iida1         215 --IESL-KHDDIFA-YE---KRFDEIVDGMDKLPTAMY---RDIQDKVHFNAQVIKIQQN--DQKVTVVYETLSKETPSV  282 (370)
T ss_dssp             --HHHH-HHHHHHT-TC---CCEEEETTCTTHHHHHHH---HHTGGGEESSCEEEEEEEC--SSCEEEEEECSSSCCCEE
T ss_pred             --Hhhh-hhhhhhc-cc---cccccchhhHHHHHHHHH---HhcCCccccCceEEEEEEe--CCeEEEEEEecCCCeEEE
Confidence              1111 1111111 11   226789999999999775   5679999999999999887  44432 2332  345689


Q ss_pred             EcCEEEEC-CCCCCCCCCcccchhhhhhh
Q 011414          326 LSHKLVLD-PSFTVPGSLASSHQQLQESF  353 (486)
Q Consensus       326 ~A~~VI~~-p~~~~~~l~~~~~~~l~~~~  353 (486)
                      .||+||+. |...+..+  .++|++++.+
T Consensus       283 ~aD~VI~A~p~~~l~~i--~~~p~l~~~~  309 (370)
T d2iida1         283 TADYVIVCTTSRAVRLI--KFNPPLLPKK  309 (370)
T ss_dssp             EESEEEECSCHHHHTTS--EEESCCCHHH
T ss_pred             EeeEEEecCCHHHHhhC--ccCCCCCHHH
Confidence            99999965 43333332  3566665543

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.62  E-value=3e-15  Score=142.97  Aligned_cols=44  Identities=20%  Similarity=0.264  Sum_probs=41.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchh
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIA   67 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~   67 (486)
                      +|||||||++||+||.+|+++|++|+|||+++++||+++|+..+
T Consensus         3 kV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~   46 (373)
T d1seza1           3 RVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQD   46 (373)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEET
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCCcCceEEeccC
Confidence            69999999999999999999999999999999999999997654

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.47  E-value=1.2e-14  Score=135.52  Aligned_cols=46  Identities=22%  Similarity=0.362  Sum_probs=42.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-cEEEEccCCCCCCCccccchhh
Q 011414           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFYGSHFSSLSIAD   68 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~-~VlvlE~~~~~GG~~~s~~~~~   68 (486)
                      .||||||||++||+||.+|+++|+ +|+||||++++||++.|+..++
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~GG~~~t~~~~g   47 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAG   47 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCEEEETT
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCCCceEEEeccCC
Confidence            489999999999999999999996 6999999999999999986543

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.41  E-value=5.4e-13  Score=126.38  Aligned_cols=59  Identities=19%  Similarity=0.242  Sum_probs=47.8

Q ss_pred             eEeecCCc---chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC
Q 011414          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (486)
Q Consensus       271 ~~~p~gG~---~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~  333 (486)
                      .+.|.+|.   ..+.++|.+.++..|++++.+++|++|..+  +++ +.|++.+| +++|++||+.
T Consensus       139 ~~~~~~g~~~p~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~--~~~-v~V~t~~g-~i~a~~VViA  200 (281)
T d2gf3a1         139 IFEPNSGVLFSENCIRAYRELAEARGAKVLTHTRVEDFDIS--PDS-VKIETANG-SYTADKLIVS  200 (281)
T ss_dssp             EEETTCEEEEHHHHHHHHHHHHHHTTCEEECSCCEEEEEEC--SSC-EEEEETTE-EEEEEEEEEC
T ss_pred             eeccccccccccccccccccccccccccccCCcEEEEEEEE--CCE-EEEEECCc-EEEcCEEEEC
Confidence            44566664   578899999999999999999999999886  555 57887666 6999999853

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.40  E-value=2.7e-13  Score=126.23  Aligned_cols=59  Identities=20%  Similarity=0.345  Sum_probs=51.2

Q ss_pred             EeecCC-cchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE
Q 011414          272 IYPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (486)
Q Consensus       272 ~~p~gG-~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~  332 (486)
                      .+|... ...+.++|.+.++..|.+|+++++|++|..+  ++++.+|.+++|++++||.||+
T Consensus       102 ~~~~~~~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~--~~~~~~v~~~~g~~i~a~~vI~  161 (251)
T d2i0za1         102 MFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYE--NGQTKAVILQTGEVLETNHVVI  161 (251)
T ss_dssp             EEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEE--TTEEEEEEETTCCEEECSCEEE
T ss_pred             eecccccHHHHHHHHHHHHHHcCCcccCCcEEEEEEEE--CCEEEEEEeCCCCeEecCeEEE
Confidence            455554 4678899999999999999999999999987  7888889999999999999885

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=99.37  E-value=4.3e-13  Score=129.46  Aligned_cols=102  Identities=15%  Similarity=0.233  Sum_probs=70.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCcccccccccccccccc
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS  102 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (486)
                      ..|+|||||++||+||..|++.|++|+|+|+++++||++.|+....                                  
T Consensus         3 KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG~~~t~~~~~----------------------------------   48 (314)
T d2bi7a1           3 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSE----------------------------------   48 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCEEECTT----------------------------------
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcCeeeEEEecC----------------------------------
Confidence            5799999999999999999999999999999999999999875321                                  


Q ss_pred             CCCCceEeecCCCEEEecChH-HHHHHHhcCcccccchhcccceeeeccCCceeecCCCHHHHhh
Q 011414          103 QHPRNFNLDVSGPRVLFCADH-AVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFK  166 (486)
Q Consensus       103 ~~~~~~~idl~Gp~ll~~~~~-l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s~~~~f~  166 (486)
                        ...+..+. ||++++...+ +.+.+.+     +.+|...........+|+.+++|.+...+..
T Consensus        49 --~g~~~~~~-Gphif~t~~~~v~~~~~~-----~~~~~~~~~~~~~~~~g~~~~~P~~~~~i~~  105 (314)
T d2bi7a1          49 --TNVMVHVY-GPHIFHTDNETVWNYVNK-----HAEMMPYVNRVKATVNGQVFSLPINLHTINQ  105 (314)
T ss_dssp             --TCCEEETT-SCCCEEESCHHHHHHHHT-----TSCEEECCCCEEEEETTEEEEESCCHHHHHH
T ss_pred             --CCceEEec-CceeecCccHHHHHHHHH-----hhhhhhhccccceeecceeeccCccHHHHHH
Confidence              01233444 6888876654 3344432     2344433322222237899999988665443

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2.6e-13  Score=131.13  Aligned_cols=47  Identities=17%  Similarity=0.275  Sum_probs=43.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchh
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIA   67 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~   67 (486)
                      .+.+|||||||++||+||+.|+++|++|+|||+++++|||+.|++.+
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GGr~~t~~~~   50 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKG   50 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCCEEEET
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcccEEEEEeC
Confidence            34689999999999999999999999999999999999999998654

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.36  E-value=5.3e-13  Score=127.93  Aligned_cols=46  Identities=22%  Similarity=0.354  Sum_probs=43.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchh
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIA   67 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~   67 (486)
                      ++||||||||++||+||..|++.|++|+|+|+++++||++.|+...
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~~~t~~~~   46 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCE   46 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCEEEET
T ss_pred             CccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcccceEEeCcC
Confidence            4899999999999999999999999999999999999999997543

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.33  E-value=1.4e-11  Score=117.74  Aligned_cols=60  Identities=25%  Similarity=0.273  Sum_probs=50.8

Q ss_pred             eEeecCCc---chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC
Q 011414          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (486)
Q Consensus       271 ~~~p~gG~---~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~  333 (486)
                      .++|..|.   ..+.+++.+.++..|++++.+++|++|..+  ++++++|++.+| +|+||+||+.
T Consensus       137 ~~~~~~g~~~p~~l~~~l~~~a~~~gv~i~~~~~V~~i~~~--~~~v~~V~T~~g-~i~a~~VV~a  199 (305)
T d1pj5a2         137 LHVPSDGLASAARAVQLLIKRTESAGVTYRGSTTVTGIEQS--GGRVTGVQTADG-VIPADIVVSC  199 (305)
T ss_dssp             EEETTCEEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEEE--TTEEEEEEETTE-EEECSEEEEC
T ss_pred             eecccccccchhhhhhhHHhhhhcccccccCCceEEEEEEe--CCEEEEEeccce-eEECCEEEEe
Confidence            44566664   578899999999999999999999999998  888899998666 7999999853

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.27  E-value=5.4e-12  Score=117.71  Aligned_cols=70  Identities=16%  Similarity=0.196  Sum_probs=52.0

Q ss_pred             EeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE-CCCCCCCCC
Q 011414          272 IYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL-DPSFTVPGS  341 (486)
Q Consensus       272 ~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~-~p~~~~~~l  341 (486)
                      .+|.....++.+.|.+.++..|.+|+++++|++|...+++..+..+...++++++||+||+ +....+|.+
T Consensus       102 ~~~~~~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~a~~VIiAtGG~S~p~~  172 (253)
T d2gqfa1         102 LFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATGGLSMPGL  172 (253)
T ss_dssp             EEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEEECCCCSSCGGG
T ss_pred             cccccchhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCCEEEEeCEEEEcCCccccccc
Confidence            4566667889999999999999999999999999876423333334456888999999885 333333443

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.23  E-value=6.3e-12  Score=118.33  Aligned_cols=59  Identities=19%  Similarity=0.218  Sum_probs=47.8

Q ss_pred             eEeecCCc---chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC
Q 011414          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (486)
Q Consensus       271 ~~~p~gG~---~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~  333 (486)
                      .+.|..|.   ..+.++|.+.+..+|++|+.+++|++|..+   ++.++|++.+| +|+||+||+.
T Consensus       140 ~~~~~~g~i~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~---~~~~~V~t~~g-~i~a~~vV~A  201 (276)
T d1ryia1         140 SFIQDDVHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERD---GEALFIKTPSG-DVWANHVVVA  201 (276)
T ss_dssp             EEETTCCBCCHHHHHHHHHHHHHHTTCEEETTCCCCEEECS---SSSEEEEETTE-EEEEEEEEEC
T ss_pred             EEeccceeeecccchhHHHHHHHHcCCEEecceEEEeEEee---cceEEEecCCe-EEEcCEEEEC
Confidence            45566664   578899999999999999999999999754   44578988666 7999999853

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.18  E-value=2.6e-10  Score=108.97  Aligned_cols=43  Identities=23%  Similarity=0.447  Sum_probs=39.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (486)
                      .++|||||||+|++||+||+.|+++|++|+||||++..||...
T Consensus        14 ~e~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~gG~s~   56 (308)
T d1y0pa2          14 HDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAK   56 (308)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGG
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcce
Confidence            4679999999999999999999999999999999999988643

>d1d5ta2 d.16.1.6 (A:292-388) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GDI-like
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.08  E-value=1.5e-10  Score=86.85  Aligned_cols=79  Identities=24%  Similarity=0.356  Sum_probs=69.4

Q ss_pred             cceEEEEEEEecCCCCC--CCCceEEEeCCCCCCCCCCceEEEEEeCCCCccCCCCeEEEEEEEeeccCcchHHHHHHHH
Q 011414          362 KGKVARGICITRSSLKP--DLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAAL  439 (486)
Q Consensus       362 ~~~v~r~i~i~~~~~~~--~~~~~~~~~p~~~~~~~~~~~v~v~~~~~~~~~~P~G~~vi~~~t~~~~~~~~~~~l~~~~  439 (486)
                      .|++.|+|||.++|++.  +.++.++++|..+.+  ..+.+|+...|+....||+|+|+..+||..++ ++++.+|++++
T Consensus         3 ~G~ViRaICIl~hPIpnt~~a~S~QIIiPq~Qv~--Rk~DIYv~~~S~~h~V~~kg~yiaiVST~vET-~nPe~El~pgl   79 (97)
T d1d5ta2           3 AGQVIRIICILSHPIKNTNDANSCQIIIPQNQVN--RKSDIYVCMISYAHNVAAQGKYIAIASTTVET-TDPEKEVEPAL   79 (97)
T ss_dssp             EEEEEEEEEEESSCCTTSTTCSSEEEEECGGGTT--CSSCEEEEEEEGGGTSSCTTCEEEEEEEECCS-SCHHHHTHHHH
T ss_pred             ccEEEEEEEEecCCcCCCCCCccEEEEeehHHhc--cCCCEEEEEeccccccCCCCeEEEEEEEEEec-CCcHHHHHHHH
Confidence            47899999999999875  346789999988776  47899999999999999999999999999876 58999999999


Q ss_pred             HHHH
Q 011414          440 SALQ  443 (486)
Q Consensus       440 ~~l~  443 (486)
                      +.|-
T Consensus        80 ~lLg   83 (97)
T d1d5ta2          80 GLLE   83 (97)
T ss_dssp             TTTC
T ss_pred             Hhhc
Confidence            9874

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.07  E-value=1.1e-09  Score=105.25  Aligned_cols=60  Identities=22%  Similarity=0.209  Sum_probs=47.3

Q ss_pred             EeecCCc---chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeC--CCc--EEEcCEEEE
Q 011414          272 IYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA--SGQ--DILSHKLVL  332 (486)
Q Consensus       272 ~~p~gG~---~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~--~G~--~i~A~~VI~  332 (486)
                      .++.+|.   .+|.++|.+.++..|++++++++|+++.+++ +++++||...  +++  .|+|+.||+
T Consensus       138 ~~~~~g~~~g~~i~~~L~~~~~~~g~~i~~~~~v~~l~~~~-~g~V~Gv~~~~~~~~~~~i~Ak~VVl  204 (317)
T d1qo8a2         138 HRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVND-DHSVVGAVVHGKHTGYYMIGAKSVVL  204 (317)
T ss_dssp             EECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEECT-TSBEEEEEEEETTTEEEEEEEEEEEE
T ss_pred             cccccccccchhhhHHHHHHhhhccceeeeccchhheeecc-cccceeeEeecccceEEEEeccceEE
Confidence            3455553   3699999999999999999999999998863 7888888753  443  478999885

>d2bcgg3 d.16.1.6 (G:302-399) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GDI-like
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.05  E-value=2.7e-10  Score=85.35  Aligned_cols=80  Identities=23%  Similarity=0.401  Sum_probs=69.0

Q ss_pred             cce-EEEEEEEecCCCCC--CCCceEEEeCCCCCCCCCCceEEEEEeCCCCccCCCCeEEEEEEEeeccCcchHHHHHHH
Q 011414          362 KGK-VARGICITRSSLKP--DLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAA  438 (486)
Q Consensus       362 ~~~-v~r~i~i~~~~~~~--~~~~~~~~~p~~~~~~~~~~~v~v~~~~~~~~~~P~G~~vi~~~t~~~~~~~~~~~l~~~  438 (486)
                      .|+ +.|+|||.++|++.  +.++.++++|..+.+  ..+.+|+...|+....||+|+|+..+||..++ ++++.+|+++
T Consensus         3 ~GqkViRaICIl~hPipnt~~a~S~QIIiPq~Qv~--Rk~DIYv~~~S~~h~V~~kg~yiAiVST~vET-~nPe~El~pg   79 (98)
T d2bcgg3           3 TGQRVIRAICILNHPVPNTSNADSLQIIIPQSQLG--RKSDIYVAIVSDAHNVCSKGHYLAIISTIIET-DKPHIELEPA   79 (98)
T ss_dssp             EEEEEEEEEEEESSCCTTSTTCSSEEEEECGGGTT--CSSCEEEEEEEGGGTSSCTTCEEEEEEEECCS-SCHHHHTHHH
T ss_pred             ccceEEEEEEEecCCcCCCCCCceEEEEEehHHhC--CCcCEEEEEeccccccCCCCcEEEEEEEEeec-CCcHHHHHHH
Confidence            354 99999999999875  346789999988766  47899999999999999999999999999876 4889999999


Q ss_pred             HHHHHh
Q 011414          439 LSALQK  444 (486)
Q Consensus       439 ~~~l~~  444 (486)
                      ++.|-.
T Consensus        80 l~lLG~   85 (98)
T d2bcgg3          80 FKLLGP   85 (98)
T ss_dssp             HGGGCS
T ss_pred             HHhhcc
Confidence            988753

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.82  E-value=5.2e-10  Score=102.07  Aligned_cols=45  Identities=18%  Similarity=0.231  Sum_probs=41.6

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s   63 (486)
                      |..+|||||||+|.+|++||.+|++.|++|+++|+++.+||.+..
T Consensus         2 m~~~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~GG~~~~   46 (233)
T d1v59a1           2 INKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLN   46 (233)
T ss_dssp             EEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHH
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCcceEeEE
Confidence            346899999999999999999999999999999999999997754

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.79  E-value=1.4e-09  Score=98.45  Aligned_cols=43  Identities=19%  Similarity=0.231  Sum_probs=40.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s   63 (486)
                      .+|||||||+|.+||+||.++++.|++|+|+|+++.+||.+..
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~~~~   44 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLN   44 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCCeeec
Confidence            5799999999999999999999999999999999999997764

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.77  E-value=2e-09  Score=101.30  Aligned_cols=43  Identities=16%  Similarity=0.137  Sum_probs=39.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhh-CCCcEEEEccCCCCCCCccc
Q 011414           21 TAFDLIVIGTGLPESVISAAASA-SGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~-~G~~VlvlE~~~~~GG~~~s   63 (486)
                      .++||||||||++||+||+.|++ .|++|+|+|+++.+||.+.+
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~   75 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWL   75 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceee
Confidence            47899999999999999999987 59999999999999998764

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.77  E-value=3.9e-09  Score=92.09  Aligned_cols=42  Identities=26%  Similarity=0.411  Sum_probs=39.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (486)
                      +..+|+|||||++||.||..|+++|++|+++|+++.+||...
T Consensus        42 ~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~   83 (179)
T d1ps9a3          42 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFN   83 (179)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHH
T ss_pred             CCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEE
Confidence            346899999999999999999999999999999999999765

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.74  E-value=1.5e-09  Score=99.13  Aligned_cols=44  Identities=20%  Similarity=0.275  Sum_probs=40.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s   63 (486)
                      ..+|||||||+|.+||+||.+|+|.|++|+|+|++..+||.+..
T Consensus         4 ~~dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~GG~~~~   47 (229)
T d1ojta1           4 DAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLN   47 (229)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHH
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeec
Confidence            46799999999999999999999999999999999999996654

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.72  E-value=3.2e-09  Score=100.87  Aligned_cols=43  Identities=19%  Similarity=0.244  Sum_probs=40.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s   63 (486)
                      +++||||||||++||++|..|.++|.+|+||||++.+||.|..
T Consensus         6 ~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~   48 (298)
T d1w4xa1           6 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYW   48 (298)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHH
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCccccccc
Confidence            6799999999999999999999999999999999999997653

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.69  E-value=4.4e-09  Score=103.47  Aligned_cols=41  Identities=15%  Similarity=0.252  Sum_probs=38.2

Q ss_pred             cccEEEECCChhHHHHHHHHhh------CCCcEEEEccCCCCCCCcc
Q 011414           22 AFDLIVIGTGLPESVISAAASA------SGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~------~G~~VlvlE~~~~~GG~~~   62 (486)
                      +|||||||||.+||+||+.|||      +|++|+||||+.++|....
T Consensus        32 e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~~   78 (380)
T d2gmha1          32 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTL   78 (380)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCCcc
Confidence            5999999999999999999998      8999999999999987654

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.69  E-value=5e-09  Score=94.80  Aligned_cols=42  Identities=21%  Similarity=0.242  Sum_probs=38.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (486)
                      ++|||||||||.+||+||.+|+|.|++|+|+|+....||...
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~~~~~~   43 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTA   43 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecccCCCcccc
Confidence            679999999999999999999999999999999888776543

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.65  E-value=8.2e-09  Score=94.38  Aligned_cols=61  Identities=18%  Similarity=0.259  Sum_probs=49.2

Q ss_pred             CCCCCCCCCCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcccc
Q 011414            3 GNESESELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (486)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~   64 (486)
                      |.|.+.-|....+++ ..+..+|+|||||.+||+||..|++.|++|+++|+++.+||.+...
T Consensus        31 ~~e~~~~~~p~~~~~-~~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~~~~   91 (233)
T d1djqa3          31 GEEYRRGWHPEKFRQ-TKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQV   91 (233)
T ss_dssp             TTHHHHCCCSSCCCC-CSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHH
T ss_pred             ChHHhcCCCCCccCc-ccCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCccccc
Confidence            444444444434444 4577899999999999999999999999999999999999987653

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.64  E-value=5.1e-09  Score=94.44  Aligned_cols=41  Identities=20%  Similarity=0.263  Sum_probs=37.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (486)
                      .+|||||||+|.+|+.||.+|++.|++|+++|++ .+||.|.
T Consensus         1 k~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~-~~GGtc~   41 (217)
T d1gesa1           1 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAK-ELGGTCV   41 (217)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-CTTHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEecc-CcCCeEe
Confidence            3699999999999999999999999999999995 6899664

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=98.64  E-value=8.5e-09  Score=98.94  Aligned_cols=43  Identities=23%  Similarity=0.434  Sum_probs=39.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (486)
                      ++++||||||+|++||+||+.|+++|++|+||||++..||...
T Consensus        21 ~et~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~gG~s~   63 (322)
T d1d4ca2          21 KETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTK   63 (322)
T ss_dssp             CEECSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSSCTTGG
T ss_pred             CCcceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCccc
Confidence            4578999999999999999999999999999999999998643

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.63  E-value=1.4e-08  Score=93.58  Aligned_cols=42  Identities=17%  Similarity=0.109  Sum_probs=36.7

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (486)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (486)
                      +.++.+|||||||++||++|+.|+++|++|+|+||+...+|.
T Consensus         3 ~~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~~~~~~   44 (268)
T d1c0pa1           3 MHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDVS   44 (268)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTCTT
T ss_pred             CCCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCCCCCCc
Confidence            446679999999999999999999999999999998754443

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=98.62  E-value=1.1e-08  Score=99.69  Aligned_cols=43  Identities=14%  Similarity=0.225  Sum_probs=37.5

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCc
Q 011414           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (486)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (486)
                      +..+|||||||+|.+|+++|.+|+++|+||+|||+....++..
T Consensus         1 md~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~~~~~   43 (379)
T d2f5va1           1 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLK   43 (379)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSSSS
T ss_pred             CCCcccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCCCCcc
Confidence            3468999999999999999999999999999999976555443

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=98.58  E-value=1.1e-08  Score=98.39  Aligned_cols=52  Identities=15%  Similarity=0.199  Sum_probs=43.7

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEe---CCCcE--EEcCEEEE
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQD--ILSHKLVL  332 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~~--i~A~~VI~  332 (486)
                      ..+..+|.+.+...|.+|+.+++|.++..+  +++++++..   .+|+.  |+|+.||+
T Consensus       158 ~~i~~~l~~~~~~~gv~i~~~~~~~~li~~--~~~v~g~~~~~~~~g~~~~i~Ak~Vvl  214 (336)
T d2bs2a2         158 HTMLFAVANECLKLGVSIQDRKEAIALIHQ--DGKCYGAVVRDLVTGDIIAYVAKGTLI  214 (336)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEEE--TTEEEEEEEEETTTCCEEEEECSEEEE
T ss_pred             HHHHHHHHHHHHhccccccceeeeeecccc--cccccceeEEeccCCcEEEEecCeEEE
Confidence            478899999999999999999999999888  788877654   46754  78999985

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.57  E-value=1.6e-08  Score=96.28  Aligned_cols=43  Identities=16%  Similarity=0.314  Sum_probs=37.2

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCc
Q 011414           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (486)
Q Consensus        18 ~~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (486)
                      |.+.+|||||||+|++||+||+.+++.| +|+||||.+..||.+
T Consensus         3 ~p~~~~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~~~gG~s   45 (305)
T d1chua2           3 LPEHSCDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVTEGST   45 (305)
T ss_dssp             CCSEECSEEEECCSHHHHHHHHHHTTTS-CEEEECSSCTTC---
T ss_pred             CCcccCCEEEECccHHHHHHHHHhhcCC-CEEEEECCCCCCCch
Confidence            4567899999999999999999999988 999999999888864

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.56  E-value=2.3e-08  Score=91.06  Aligned_cols=39  Identities=31%  Similarity=0.270  Sum_probs=35.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      -+|||||||+|.+|++||.+++|.|++|+|+|+++..|.
T Consensus         2 ~dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~~   40 (235)
T d1h6va1           2 YDFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPL   40 (235)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCTT
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc
Confidence            369999999999999999999999999999999877554

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.52  E-value=2.7e-08  Score=86.93  Aligned_cols=39  Identities=15%  Similarity=0.411  Sum_probs=35.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (486)
                      .|||||||||.+|+.||.+++|.|.+|+++|++  +||.+.
T Consensus         1 ~yDViIIGgGpaGl~AAi~aar~G~~v~iie~~--~gg~~~   39 (184)
T d1fl2a1           1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGER--FGGQIL   39 (184)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECSS--TTGGGG
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCeEEEEEEe--cCCccc
Confidence            389999999999999999999999999999975  788765

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.50  E-value=3.7e-08  Score=91.45  Aligned_cols=45  Identities=33%  Similarity=0.448  Sum_probs=41.7

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        18 ~~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (486)
                      .++.+|||||||+|.+|+.+|..|++.|.+|+++|+++.+||.|-
T Consensus        38 ~~~k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~c~   82 (261)
T d1mo9a1          38 NDPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCP   82 (261)
T ss_dssp             TCCSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHH
T ss_pred             CCCccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccccccc
Confidence            345789999999999999999999999999999999999999764

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.49  E-value=4.3e-08  Score=88.35  Aligned_cols=37  Identities=16%  Similarity=0.246  Sum_probs=33.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccC-CCCC
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPN-PFYG   58 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~-~~~G   58 (486)
                      .|||||||||++|+.||.++||.|.+|+++|++ +.+|
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig   39 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVM   39 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTT
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhc
Confidence            599999999999999999999999999999998 3444

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=2.5e-08  Score=89.87  Aligned_cols=41  Identities=20%  Similarity=0.287  Sum_probs=36.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (486)
                      .+|||||||+|.+|++||.+++|.|++|+|+|+ +.+||.+.
T Consensus         2 ~~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk-~~~GG~c~   42 (221)
T d3grsa1           2 ASYDYLVIGGGSGGLASARRAAELGARAAVVES-HKLGGTCV   42 (221)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTHHHH
T ss_pred             CccCEEEECCCHHHHHHHHHHHHCCCEEEEEec-cCCCCccc
Confidence            369999999999999999999999999999998 46676543

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.48  E-value=5.7e-08  Score=89.71  Aligned_cols=41  Identities=20%  Similarity=0.182  Sum_probs=36.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (486)
                      |+..+|+|||||++||++|..|+++|++|+||||++.++..
T Consensus         2 ~~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~   42 (265)
T d2voua1           2 PTTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSG   42 (265)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCC
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCC
Confidence            45668999999999999999999999999999999876543

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.45  E-value=3.7e-08  Score=88.71  Aligned_cols=40  Identities=20%  Similarity=0.275  Sum_probs=35.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (486)
                      +|||||||+|.+|++||.+++|.|++|+|+|+.. +||.+.
T Consensus         3 ~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~-~GG~~~   42 (223)
T d1ebda1           3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN-LGGVCL   42 (223)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEecCC-CCccee
Confidence            5999999999999999999999999999999964 577543

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.44  E-value=8.1e-08  Score=91.51  Aligned_cols=42  Identities=14%  Similarity=0.125  Sum_probs=39.0

Q ss_pred             cccEEEECCChhHHHHHHHHhh--CCCcEEEEccCCCCCCCccc
Q 011414           22 AFDLIVIGTGLPESVISAAASA--SGKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~--~G~~VlvlE~~~~~GG~~~s   63 (486)
                      ++||+|||+|++||+||..|++  .|++|+++|+++++||.+..
T Consensus        50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (311)
T d2gjca1          50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWL   93 (311)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCcceeEe
Confidence            6899999999999999999996  49999999999999998764

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=98.44  E-value=2.9e-08  Score=95.56  Aligned_cols=43  Identities=28%  Similarity=0.234  Sum_probs=39.2

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCc
Q 011414           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (486)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (486)
                      ...+|||||||+|++||+||..++++|++|+|+||.+..||..
T Consensus         4 ~~~~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~~gg~s   46 (330)
T d1neka2           4 PVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHT   46 (330)
T ss_dssp             CEEEESCEEECCSHHHHHHHHHHHHTTCCCEEECSSCGGGSGG
T ss_pred             CcccCCEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCCCCCcH
Confidence            3468999999999999999999999999999999999888753

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=98.44  E-value=5.9e-08  Score=94.65  Aligned_cols=36  Identities=17%  Similarity=0.270  Sum_probs=33.6

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 011414           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (486)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (486)
                      +.+++||||||+|.+|+++|.+|+++|++|+|||+.
T Consensus         4 ~~~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG   39 (370)
T d3coxa1           4 DGDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMG   39 (370)
T ss_dssp             TTCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            346899999999999999999999999999999994

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.43  E-value=2.8e-08  Score=90.52  Aligned_cols=41  Identities=17%  Similarity=0.167  Sum_probs=37.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCC-------CcEEEEccCCCCCCCccc
Q 011414           23 FDLIVIGTGLPESVISAAASASG-------KSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G-------~~VlvlE~~~~~GG~~~s   63 (486)
                      +.|+|||+|.+||+||.+|+++|       ++|+|+||++++||.++.
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~   50 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRS   50 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHH
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeee
Confidence            68999999999999999999998       589999999999997753

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.42  E-value=4.8e-08  Score=90.55  Aligned_cols=39  Identities=26%  Similarity=0.345  Sum_probs=36.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (486)
                      |||||||+|.+|+.||.++++.|++|+++|++ .+||.|.
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~~-~~GGtc~   40 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKS-RLGGTCV   40 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-STTHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEecC-CCCCeEE
Confidence            89999999999999999999999999999985 5898764

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.40  E-value=1e-07  Score=91.64  Aligned_cols=44  Identities=23%  Similarity=0.258  Sum_probs=38.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCC--CcEEEEccCCCCCCCccc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G--~~VlvlE~~~~~GG~~~s   63 (486)
                      +....|+|||||++||+||..|+++|  .+|+|+||++.+||.|..
T Consensus         2 ~~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~   47 (335)
T d2gv8a1           2 PTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNY   47 (335)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSC
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccc
Confidence            34457999999999999999998876  599999999999998864

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.39  E-value=8.1e-08  Score=84.60  Aligned_cols=42  Identities=14%  Similarity=0.222  Sum_probs=38.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCc-EEEEccCCCCCCCcccc
Q 011414           23 FDLIVIGTGLPESVISAAASASGKS-VLHLDPNPFYGSHFSSL   64 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~-VlvlE~~~~~GG~~~s~   64 (486)
                      ..|+|||||.+||.||..|++.|++ |+|+||+++.||.++..
T Consensus         5 ~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~~~~   47 (196)
T d1gtea4           5 AKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSE   47 (196)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHT
T ss_pred             CEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchhhhh
Confidence            4799999999999999999999985 99999999999977654

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.39  E-value=1e-07  Score=88.58  Aligned_cols=43  Identities=16%  Similarity=0.230  Sum_probs=38.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-cEEEEccCCCCCCCccccc
Q 011414           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFYGSHFSSLS   65 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~-~VlvlE~~~~~GG~~~s~~   65 (486)
                      +||+|||||++||++|+.|+++|. +|+|+||++.++.......
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~g~~i~   45 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGIN   45 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCceEEE
Confidence            699999999999999999999996 9999999998876555443

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.38  E-value=5.8e-08  Score=87.52  Aligned_cols=41  Identities=20%  Similarity=0.238  Sum_probs=37.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (486)
                      .+||+||||+|.+|+.||..+++.|++|+|+|++ .+||.|.
T Consensus         4 ~~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~-~~GG~c~   44 (220)
T d1lvla1           4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ-ALGGTCL   44 (220)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTCCEEEECSS-CTTHHHH
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCCCccc
Confidence            3699999999999999999999999999999986 5788654

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.36  E-value=1.4e-07  Score=91.26  Aligned_cols=43  Identities=19%  Similarity=0.206  Sum_probs=37.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhh----CCCcEEEEccCCCCCCCcc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASA----SGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~----~G~~VlvlE~~~~~GG~~~   62 (486)
                      .-++||||||+|++||+||+.|++    +|++|+||||....||.+.
T Consensus        19 ~~e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~gg~s~   65 (356)
T d1jnra2          19 VVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAV   65 (356)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTCSTT
T ss_pred             EEecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCCCChhH
Confidence            346899999999999999999975    7999999999988877653

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=98.34  E-value=1.2e-07  Score=92.27  Aligned_cols=34  Identities=32%  Similarity=0.553  Sum_probs=32.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (486)
                      +.||+||||+|.+|+++|.+|+++|++|+|||+.
T Consensus         1 t~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG   34 (360)
T d1kdga1           1 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERG   34 (360)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHhhCCCeEEEEEcc
Confidence            5799999999999999999999999999999995

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.33  E-value=1.1e-07  Score=86.13  Aligned_cols=41  Identities=10%  Similarity=-0.059  Sum_probs=37.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCCCCCccc
Q 011414           23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~GG~~~s   63 (486)
                      ..|+|||||.+||+||.+|+++  |++|+|+|+++++||.++.
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~   44 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRF   44 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHH
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehh
Confidence            4799999999999999999886  7799999999999997653

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.31  E-value=1.2e-07  Score=83.35  Aligned_cols=45  Identities=11%  Similarity=0.108  Sum_probs=38.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS   65 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~   65 (486)
                      ...||+|||+|.+||.||.+|+|.|.+|+++|+++.-|.+..+-.
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~~~~~   48 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTE   48 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSB
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccccccccch
Confidence            457999999999999999999999999999999877555555433

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=98.31  E-value=1.7e-07  Score=91.12  Aligned_cols=32  Identities=28%  Similarity=0.393  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (486)
                      .||||||+|.+|+++|.+|+++|++|+|||+.
T Consensus         3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG   34 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMG   34 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEeCcCHHHHHHHHHHHHCcCeEEEEecC
Confidence            69999999999999999999999999999994

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=98.29  E-value=2e-07  Score=89.66  Aligned_cols=44  Identities=16%  Similarity=0.231  Sum_probs=36.7

Q ss_pred             CcccEEEECCChhHHHHHHHHh-----hCCCcEEEEccCCCC--CCCcccc
Q 011414           21 TAFDLIVIGTGLPESVISAAAS-----ASGKSVLHLDPNPFY--GSHFSSL   64 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La-----~~G~~VlvlE~~~~~--GG~~~s~   64 (486)
                      ..|||+|||||++||++|..|+     ++|++|+||||++.+  .|+..++
T Consensus         6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~~~~r~~~l   56 (360)
T d1pn0a1           6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGL   56 (360)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCCEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCCcCCeEEEE
Confidence            4699999999999999999996     689999999998765  3444443

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.25  E-value=2e-07  Score=85.11  Aligned_cols=38  Identities=32%  Similarity=0.364  Sum_probs=34.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCC-CcEEEEccCCCCC
Q 011414           21 TAFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYG   58 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G-~~VlvlE~~~~~G   58 (486)
                      .+|||||||+|.+|++||.++++.| ++|+|+|+....|
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~~~   40 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHG   40 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSB
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEeccCC
Confidence            5799999999999999999999998 5799999987643

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.25  E-value=2.4e-07  Score=86.87  Aligned_cols=33  Identities=15%  Similarity=0.281  Sum_probs=31.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      +||+|||||++||++|.+|+++|++|+|+||++
T Consensus         3 ~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~   35 (292)
T d1k0ia1           3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT   35 (292)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            599999999999999999999999999999986

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.22  E-value=3.3e-07  Score=83.00  Aligned_cols=36  Identities=31%  Similarity=0.302  Sum_probs=31.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCC-cEEEEccCCC
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNPF   56 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~-~VlvlE~~~~   56 (486)
                      ..|||||||+|.+|++||.++++.|. +|+|+|+...
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~~   38 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMV   38 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeecc
Confidence            57999999999999999999999885 6899998643

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.20  E-value=3.1e-07  Score=80.84  Aligned_cols=38  Identities=13%  Similarity=0.097  Sum_probs=34.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (486)
                      ...+||+|||||.+|+.||.+|+|.|.+|+|+|+....
T Consensus         3 ~~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~   40 (192)
T d1vdca1           3 THNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMAN   40 (192)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBT
T ss_pred             cccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeeccc
Confidence            35689999999999999999999999999999987764

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=98.14  E-value=6.6e-07  Score=87.71  Aligned_cols=37  Identities=24%  Similarity=0.383  Sum_probs=33.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCC-CcEEEEccCCC
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPF   56 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G-~~VlvlE~~~~   56 (486)
                      ..+||+||||+|.+|+++|.+|+++| ++|+|||+..+
T Consensus        15 ~~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~   52 (385)
T d1cf3a1          15 GRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSY   52 (385)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCC
T ss_pred             CCeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCCC
Confidence            35699999999999999999999986 89999999643

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=98.12  E-value=8e-07  Score=87.28  Aligned_cols=36  Identities=22%  Similarity=0.426  Sum_probs=33.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCC-CcEEEEccCCC
Q 011414           21 TAFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPF   56 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G-~~VlvlE~~~~   56 (486)
                      ++||+||||+|.+|+++|.+|+++| ++|+|||+...
T Consensus        23 ~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~   59 (391)
T d1gpea1          23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY   59 (391)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred             CeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCC
Confidence            4799999999999999999999998 79999999754

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=98.08  E-value=5.9e-07  Score=85.38  Aligned_cols=41  Identities=20%  Similarity=0.156  Sum_probs=36.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCCCCCc
Q 011414           21 TAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHF   61 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~GG~~   61 (486)
                      .++||||||+|++||.||+.++++  |.+|+++||....||.+
T Consensus         4 ~~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~~g~s   46 (311)
T d1kf6a2           4 FQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHT   46 (311)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGG
T ss_pred             eecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCCCCCcH
Confidence            368999999999999999999986  77999999998877753

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=97.97  E-value=1.6e-06  Score=83.68  Aligned_cols=35  Identities=23%  Similarity=0.456  Sum_probs=32.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      ..||+||||+|.+|+++|.+||++ +||+|||+.+.
T Consensus        25 ~~YD~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~~   59 (351)
T d1ju2a1          25 GSYDYVIVGGGTSGCPLAATLSEK-YKVLVLERGSL   59 (351)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTTT-SCEEEECSSBC
T ss_pred             CCccEEEECccHHHHHHHHHhcCC-CCEEEEecCCC
Confidence            469999999999999999999987 99999999754

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.66  E-value=2e-06  Score=77.82  Aligned_cols=35  Identities=23%  Similarity=0.246  Sum_probs=31.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (486)
                      .|+|||||+.||++|+.|+++|++|+++|+.+.++
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~~   36 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYA   36 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEE
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceEEeeeeecc
Confidence            59999999999999999999999999999866554

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.64  E-value=3.3e-05  Score=61.67  Aligned_cols=38  Identities=26%  Similarity=0.181  Sum_probs=35.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (486)
                      -.++|||||..|+-+|..|++.|.+|+++|+++++...
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~   60 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG   60 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT
T ss_pred             CeEEEECCCccceeeeeeecccccEEEEEEecceeccc
Confidence            47999999999999999999999999999999998654

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.58  E-value=1.1e-05  Score=72.78  Aligned_cols=39  Identities=18%  Similarity=0.173  Sum_probs=32.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCC---CcEEEEccCCCCCCCcc
Q 011414           23 FDLIVIGTGLPESVISAAASASG---KSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G---~~VlvlE~~~~~GG~~~   62 (486)
                      .+|||||+|.+|++||.++++.|   ++|+++|+ +.+||.|.
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk-~~~GG~cl   43 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDC-DGIGGAAV   43 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEES-SCTTHHHH
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEec-CCCCceee
Confidence            47999999999999999887765   67999998 56888554

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=97.53  E-value=4.3e-05  Score=61.37  Aligned_cols=39  Identities=23%  Similarity=0.326  Sum_probs=36.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCc
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (486)
                      ..++|||||+.|+-+|..|++.|++|+++|+++++-++.
T Consensus        31 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~~   69 (121)
T d1d7ya2          31 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRA   69 (121)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT
T ss_pred             CeEEEECcchhHHHHHHHhhcccceEEEEeecccccccc
Confidence            479999999999999999999999999999999986654

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.52  E-value=5.6e-05  Score=60.84  Aligned_cols=39  Identities=23%  Similarity=0.217  Sum_probs=35.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCc
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (486)
                      ..|+|||+|+.|+-+|..|++.|++|+++|+.+++-++.
T Consensus        31 k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~   69 (123)
T d1nhpa2          31 NNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVY   69 (123)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT
T ss_pred             CEEEEECChHHHHHHHHHhhccceEEEEEEecCcccccc
Confidence            479999999999999999999999999999999885544

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.50  E-value=3.8e-05  Score=61.78  Aligned_cols=37  Identities=16%  Similarity=0.259  Sum_probs=34.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      .+++|||||+.|+-+|..|++.|++|+++|+++++.+
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~   69 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG   69 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT
T ss_pred             CcEEEECCcHHHHHHHHHhhcccceEEEEeccccccC
Confidence            3699999999999999999999999999999998864

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.49  E-value=5.3e-05  Score=61.92  Aligned_cols=40  Identities=25%  Similarity=0.217  Sum_probs=36.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (486)
                      ..|+|||||+.|+-+|..|++.|++|+++|+++++..+..
T Consensus        36 k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~~   75 (133)
T d1q1ra2          36 NRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVT   75 (133)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTS
T ss_pred             CEEEEECCchHHHHHHHHHHhhCcceeeeeeccccccccc
Confidence            4799999999999999999999999999999999876543

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=97.47  E-value=7.7e-05  Score=59.32  Aligned_cols=38  Identities=11%  Similarity=0.042  Sum_probs=35.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (486)
                      -.|+|||+|+.|+-+|..|++.|.+|+++|+.+++...
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~   59 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS   59 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT
T ss_pred             CEEEEECCChhhHHHHHHhhccccEEEEEeecchhhhh
Confidence            36999999999999999999999999999999998644

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.44  E-value=7.6e-05  Score=59.25  Aligned_cols=38  Identities=18%  Similarity=0.161  Sum_probs=35.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (486)
                      -.++|||||+.|+-+|..|++.|++|+++|+.+++.-.
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~~   59 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT   59 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT
T ss_pred             CeEEEECCCHHHHHHHHHHhhcccceEEEeeecccccc
Confidence            36999999999999999999999999999999998643

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.41  E-value=6.6e-05  Score=59.85  Aligned_cols=36  Identities=8%  Similarity=0.022  Sum_probs=34.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (486)
                      -.|+|||||..|+-+|..|++.|.+|+++|+.+++.
T Consensus        23 ~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il   58 (117)
T d1onfa2          23 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRIL   58 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSC
T ss_pred             CEEEEECCchHHHHHHHHHHhccccceeeehhcccc
Confidence            469999999999999999999999999999999884

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=0.00016  Score=58.31  Aligned_cols=37  Identities=14%  Similarity=0.065  Sum_probs=34.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      -.++|||+|..|+-+|..|++.|.+|+++|+++++-.
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l~   59 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLR   59 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEeecccccc
Confidence            4799999999999999999999999999999998743

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.24  E-value=0.00017  Score=57.48  Aligned_cols=38  Identities=21%  Similarity=0.153  Sum_probs=35.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (486)
                      -.++|||||..|+-.|..|++.|.+|+++|+++++--.
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~~   60 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPA   60 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT
T ss_pred             CeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCCc
Confidence            47999999999999999999999999999999997543

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.20  E-value=0.00021  Score=57.21  Aligned_cols=39  Identities=23%  Similarity=0.322  Sum_probs=35.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCc
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (486)
                      -.++|||||..|+-.|..|++.|.+|+++|+++++-...
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~~   62 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASM   62 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSSS
T ss_pred             CeEEEECCCchHHHHHHHHHhhCcceeEEEeccccchhh
Confidence            379999999999999999999999999999999986543

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=97.17  E-value=0.00011  Score=62.52  Aligned_cols=40  Identities=20%  Similarity=0.334  Sum_probs=34.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--cEEEEccCCCCCCCccc
Q 011414           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPNPFYGSHFSS   63 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~--~VlvlE~~~~~GG~~~s   63 (486)
                      .|||||||.+|+.+|..|++.|.  +|+++|+++.+.+....
T Consensus         4 rivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~   45 (186)
T d1fcda1           4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLS   45 (186)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTH
T ss_pred             cEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCcccccccc
Confidence            69999999999999999999885  79999999987665443

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.09  E-value=0.00019  Score=57.55  Aligned_cols=39  Identities=18%  Similarity=0.158  Sum_probs=35.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCc
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (486)
                      -.++|||+|..|+=.|..|++.|.+|+++|+++++-...
T Consensus        26 ~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~~~   64 (123)
T d1dxla2          26 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTM   64 (123)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTS
T ss_pred             CeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCchh
Confidence            369999999999999999999999999999999986443

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=96.90  E-value=0.00036  Score=59.55  Aligned_cols=40  Identities=18%  Similarity=0.057  Sum_probs=35.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (486)
                      -||||||+|..|+-+|..|++.|++|+|++..+.......
T Consensus         4 ~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~~   43 (185)
T d1q1ra1           4 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHH   43 (185)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBC
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccchh
Confidence            4899999999999999999999999999998887654443

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.00033  Score=61.90  Aligned_cols=38  Identities=21%  Similarity=0.360  Sum_probs=33.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCC--cEEEEccCCCC
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGK--SVLHLDPNPFY   57 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~--~VlvlE~~~~~   57 (486)
                      |+++++||||+|++|+.+|..|++.|+  +|+++++.+++
T Consensus         2 p~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~   41 (213)
T d1m6ia1           2 PSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPEL   41 (213)
T ss_dssp             CSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSC
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCC
Confidence            578999999999999999999998886  59999887654

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=96.89  E-value=0.00048  Score=54.77  Aligned_cols=36  Identities=14%  Similarity=0.140  Sum_probs=34.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (486)
                      -.|+|||+|+.|+-.|..|++.|.+|+++|+++++.
T Consensus        23 ~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l   58 (121)
T d1mo9a2          23 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK   58 (121)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhcchhheEeeccchhh
Confidence            479999999999999999999999999999999875

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=96.87  E-value=0.00062  Score=54.60  Aligned_cols=39  Identities=15%  Similarity=0.071  Sum_probs=35.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCc
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (486)
                      -.++|||+|+.|+=.|..|++.|.+|+++|+.+++....
T Consensus        27 ~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~~   65 (125)
T d1ojta2          27 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGA   65 (125)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTS
T ss_pred             CeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccccccc
Confidence            369999999999999999999999999999999887654

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.85  E-value=0.00037  Score=59.18  Aligned_cols=34  Identities=15%  Similarity=0.120  Sum_probs=31.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      ..|+|||+|..|..+|.+|+++|++|+|+||+..
T Consensus         3 K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~   36 (182)
T d1e5qa1           3 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLE   36 (182)
T ss_dssp             CEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECChH
Confidence            4699999999999999999999999999999755

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.80  E-value=0.00087  Score=53.45  Aligned_cols=35  Identities=11%  Similarity=0.102  Sum_probs=31.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (486)
                      .++|||||..|+=.|..|++.|.+|++++++....
T Consensus        22 ~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~~l~   56 (122)
T d1h6va2          22 KTLVVGASYVALECAGFLAGIGLDVTVMVRSILLR   56 (122)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSST
T ss_pred             eEEEECCCccHHHHHHHHhhcCCeEEEEEechhhc
Confidence            69999999999999999999999999999865443

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.80  E-value=0.00046  Score=52.24  Aligned_cols=34  Identities=21%  Similarity=0.196  Sum_probs=31.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      ..|+|+|.|.+|+++|.+|++.|.+|.+.|.+..
T Consensus         6 K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~   39 (93)
T d2jfga1           6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT   39 (93)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence            3699999999999999999999999999999765

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=96.66  E-value=0.0031  Score=50.89  Aligned_cols=55  Identities=7%  Similarity=0.028  Sum_probs=46.8

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~  333 (486)
                      .++.+.+.+..+..|.++++++.|++|....+++++..|.+++|+++.||.||+.
T Consensus        77 ~~~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a  131 (133)
T d1q1ra2          77 PPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAG  131 (133)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEEC
T ss_pred             hhhhhhhhhcccccccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEe
Confidence            3667777788899999999999999998764466777899999999999999864

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.63  E-value=0.00073  Score=56.67  Aligned_cols=34  Identities=18%  Similarity=0.252  Sum_probs=30.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (486)
                      .|+|||+|..|+-+|..|++ +.+|+++|+++++.
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~   35 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPY   35 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCC
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEecccccc
Confidence            48999999999999999976 77999999987653

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=96.63  E-value=0.0029  Score=49.76  Aligned_cols=52  Identities=15%  Similarity=0.252  Sum_probs=45.1

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~  332 (486)
                      .++.+.+.+..+..|.++++++.|++|+.+. +++ ..|++++|+++.||.||.
T Consensus        64 ~~~~~~l~~~l~~~GV~v~~~~~v~~ie~~~-~~~-~~v~~~~G~~i~~D~Vi~  115 (117)
T d1aoga2          64 HTLREELTKQLTANGIQILTKENPAKVELNA-DGS-KSVTFESGKKMDFDLVMM  115 (117)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEECT-TSC-EEEEETTSCEEEESEEEE
T ss_pred             hHHHHHHHHHHHhcCcEEEcCCEEEEEEEcC-CCe-EEEEECCCcEEEeCEEEE
Confidence            5788999999999999999999999998652 444 468899999999999985

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.47  E-value=0.0011  Score=56.56  Aligned_cols=32  Identities=28%  Similarity=0.352  Sum_probs=30.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      .+.|||+|..|+..|+.|+++|++|.++++++
T Consensus         3 ~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~   34 (184)
T d1bg6a2           3 TYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   34 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58999999999999999999999999999964

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.45  E-value=0.00097  Score=57.75  Aligned_cols=34  Identities=12%  Similarity=0.140  Sum_probs=30.7

Q ss_pred             cEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCC
Q 011414           24 DLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFY   57 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~   57 (486)
                      .|+|||||.+|+.+|..|++.  +.+|+++|+++++
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~   37 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI   37 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSS
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcc
Confidence            599999999999999999987  4579999998876

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=96.31  E-value=0.002  Score=50.74  Aligned_cols=36  Identities=8%  Similarity=0.043  Sum_probs=30.4

Q ss_pred             ccEEEECCChhHHHHHHHHh---hCCCcEEEEccCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAAS---ASGKSVLHLDPNPFYG   58 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La---~~G~~VlvlE~~~~~G   58 (486)
                      -.++|||||+.|+-+|..|+   +.|.+|+++|+.+++-
T Consensus        21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL   59 (117)
T d1aoga2          21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL   59 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS
T ss_pred             CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh
Confidence            47999999999999997655   4566899999998874

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=96.27  E-value=0.0059  Score=47.84  Aligned_cols=53  Identities=15%  Similarity=0.194  Sum_probs=45.4

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~  333 (486)
                      .++.+.+.+..+..|.++++++.|++|..+. ++. ..|.+++|+++.||.||..
T Consensus        62 ~~~~~~~~~~l~~~GI~v~~~~~v~~i~~~~-~g~-~~v~~~~g~~i~~D~Vi~a  114 (117)
T d1feca2          62 SELRKQLTEQLRANGINVRTHENPAKVTKNA-DGT-RHVVFESGAEADYDVVMLA  114 (117)
T ss_dssp             HHHHHHHHHHHHHTTEEEEETCCEEEEEECT-TSC-EEEEETTSCEEEESEEEEC
T ss_pred             chhhHHHHHHHhhCcEEEEcCCEEEEEEECC-CCE-EEEEECCCCEEEcCEEEEe
Confidence            5788999999999999999999999998752 443 5788899999999999864

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.26  E-value=0.0019  Score=53.96  Aligned_cols=33  Identities=21%  Similarity=0.225  Sum_probs=31.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      .|.|||+|--|...|..|+++|++|++++|++.
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~   34 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence            589999999999999999999999999999764

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.20  E-value=0.00085  Score=57.29  Aligned_cols=36  Identities=19%  Similarity=0.172  Sum_probs=31.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      .|||||+|.+|+-+|..|++.|.+|.+++..+....
T Consensus         5 ~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~   40 (183)
T d1d7ya1           5 PVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAER   40 (183)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSC
T ss_pred             CEEEECccHHHHHHHHHHHhcCCceEEEEEeccccc
Confidence            599999999999999999999999888887766543

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.15  E-value=0.0024  Score=52.95  Aligned_cols=42  Identities=10%  Similarity=0.142  Sum_probs=35.3

Q ss_pred             cEEEE--CCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccc
Q 011414           24 DLIVI--GTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS   65 (486)
Q Consensus        24 DViII--GaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~   65 (486)
                      .|||+  |+|..|+-+|..|++.|.+|+++|+.++++-..-...
T Consensus        41 ~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~~~~~~   84 (156)
T d1djqa2          41 RVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMHFTLE   84 (156)
T ss_dssp             EEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHHHHTTC
T ss_pred             ceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccccccchhH
Confidence            46665  9999999999999999999999999998865544433

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=96.14  E-value=0.0071  Score=47.33  Aligned_cols=53  Identities=11%  Similarity=0.137  Sum_probs=45.0

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~  333 (486)
                      .++.+.+.+..+..|.++++++.|++|..+. ++. +.|++++|+++.+|.||+.
T Consensus        62 ~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~-~~~-~~v~~~~g~~~~~D~vi~a  114 (116)
T d1gesa2          62 PMISETLVEVMNAEGPQLHTNAIPKAVVKNT-DGS-LTLELEDGRSETVDCLIWA  114 (116)
T ss_dssp             HHHHHHHHHHHHHHSCEEECSCCEEEEEECT-TSC-EEEEETTSCEEEESEEEEC
T ss_pred             hhhHHHHHHHHHHCCCEEEeCCEEEEEEEcC-CcE-EEEEECCCCEEEcCEEEEe
Confidence            5788999999999999999999999998762 344 4688899999999999863

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=96.14  E-value=0.0036  Score=51.62  Aligned_cols=41  Identities=20%  Similarity=0.360  Sum_probs=36.5

Q ss_pred             CCCCCCCcccEEEEC-CChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           15 YPPIEPTAFDLIVIG-TGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        15 ~~~~~~~~~DViIIG-aGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      |..+.+..-.|.||| .|+-|...|..|+++|++|.++|++.
T Consensus         2 ~~~~~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~   43 (152)
T d2pv7a2           2 FKTINSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDRED   43 (152)
T ss_dssp             CCCSCTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CcccCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence            566677777899999 79999999999999999999999864

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.13  E-value=0.0089  Score=48.24  Aligned_cols=52  Identities=17%  Similarity=0.171  Sum_probs=44.0

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~  333 (486)
                      .++.+.+.+.++..|.++++|+.|++|..+  +++ +.|++++|+++.||.||..
T Consensus        83 ~~~~~~~~~~l~~~GV~~~~~~~V~~i~~~--~~~-~~v~l~~G~~i~aD~Vi~A  134 (137)
T d1m6ia2          83 EYLSNWTMEKVRREGVKVMPNAIVQSVGVS--SGK-LLIKLKDGRKVETDHIVAA  134 (137)
T ss_dssp             HHHHHHHHHHHHTTTCEEECSCCEEEEEEE--TTE-EEEEETTSCEEEESEEEEC
T ss_pred             HHHHHHHHHHHHhCCcEEEeCCEEEEEEec--CCE-EEEEECCCCEEECCEEEEe
Confidence            357777788889999999999999999876  554 4688999999999999864

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.13  E-value=0.0021  Score=55.98  Aligned_cols=32  Identities=25%  Similarity=0.428  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      .|.|||.|..||..|+.||++|++|..+|.+.
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~   33 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence            48999999999999999999999999999874

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.09  E-value=0.0027  Score=51.56  Aligned_cols=39  Identities=23%  Similarity=0.298  Sum_probs=33.7

Q ss_pred             ccEEEECCChhHHHHHHHHhh----CCCcEEEEccCCCCCCCc
Q 011414           23 FDLIVIGTGLPESVISAAASA----SGKSVLHLDPNPFYGSHF   61 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~----~G~~VlvlE~~~~~GG~~   61 (486)
                      ..++|||||+.|+-+|..|++    .|.+|+++|+++++.++.
T Consensus        38 k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~   80 (137)
T d1m6ia2          38 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKI   80 (137)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCccc
Confidence            369999999999999998864    599999999999987654

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=96.07  E-value=0.0029  Score=49.70  Aligned_cols=37  Identities=14%  Similarity=0.038  Sum_probs=31.5

Q ss_pred             ccEEEECCChhHHHHHHHHh---hCCCcEEEEccCCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAAS---ASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La---~~G~~VlvlE~~~~~GG   59 (486)
                      -.++|||+|+.|+-+|..|+   +.|.+|.++|+.+++..
T Consensus        19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~   58 (117)
T d1feca2          19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILR   58 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSST
T ss_pred             CeEEEECCChHHHHHHHHhHhhcccccccceecccccccc
Confidence            36999999999999997655   45999999999988754

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.88  E-value=0.0033  Score=54.24  Aligned_cols=34  Identities=32%  Similarity=0.419  Sum_probs=31.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      -.|.|||+|.-|...|..++++|++|.++|+++.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~   38 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED   38 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            3699999999999999999999999999998753

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=95.80  E-value=0.0046  Score=51.21  Aligned_cols=40  Identities=15%  Similarity=0.225  Sum_probs=36.2

Q ss_pred             CCCCCCcccEEEECCChhHHHHHHHHhhCCC-cEEEEccCC
Q 011414           16 PPIEPTAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (486)
Q Consensus        16 ~~~~~~~~DViIIGaGl~GL~aA~~La~~G~-~VlvlE~~~   55 (486)
                      |+++..+..|.|||+|..|.++|..|+..|. ++.++|.+.
T Consensus         1 ~~~~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~   41 (154)
T d1pzga1           1 PALVQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   41 (154)
T ss_dssp             CCCCSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CccccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEecc
Confidence            6788889999999999999999999999886 799999776

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=95.77  E-value=0.003  Score=54.17  Aligned_cols=32  Identities=25%  Similarity=0.396  Sum_probs=30.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      .|.|||+|.-|...|..++++|++|.++|+++
T Consensus         6 ~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (186)
T d1wdka3           6 QAAVLGAGIMGGGIAYQSASKGTPILMKDINE   37 (186)
T ss_dssp             SEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            59999999999999999999999999999974

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.75  E-value=0.0043  Score=49.80  Aligned_cols=32  Identities=19%  Similarity=0.367  Sum_probs=30.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      .|+|+|+|--|...|..|.+.|++|+++|++.
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~   33 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   33 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCCh
Confidence            58999999999999999999999999999964

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=95.22  E-value=0.0082  Score=50.04  Aligned_cols=32  Identities=16%  Similarity=0.316  Sum_probs=29.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      .|.|||+|.-|...|..|+++|++|.++|++.
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~   33 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence            48899999999999999999999999999974

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=95.22  E-value=0.0082  Score=49.93  Aligned_cols=32  Identities=22%  Similarity=0.313  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (486)
                      -.|+|||+|.+|+.|+..+.+-|-+|.++|.+
T Consensus        33 a~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~   64 (168)
T d1pjca1          33 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDIN   64 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cEEEEECCChHHHHHHHHHhhCCCEEEEEeCc
Confidence            57999999999999999999999999999986

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.14  E-value=0.03  Score=43.61  Aligned_cols=52  Identities=8%  Similarity=0.042  Sum_probs=43.7

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEE-cCEEEE
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDIL-SHKLVL  332 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~-A~~VI~  332 (486)
                      .++.+.+.+..+..|.++++++.|++|.... ++. +.|++++|+++. +|.||.
T Consensus        63 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~-~~~-~~v~~~~G~~~~~~D~Vi~  115 (117)
T d1onfa2          63 ESVINVLENDMKKNNINIVTFADVVEIKKVS-DKN-LSIHLSDGRIYEHFDHVIY  115 (117)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEESS-TTC-EEEEETTSCEEEEESEEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEECCEEEEEEEcC-CCe-EEEEECCCCEEEeCCEEEE
Confidence            5888999999999999999999999998652 443 578899999885 699885

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=95.13  E-value=0.0075  Score=48.30  Aligned_cols=32  Identities=31%  Similarity=0.360  Sum_probs=30.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      .+||||.|-.|..+|..|.+.|++|+++|++.
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~   33 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   33 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEecCcH
Confidence            58999999999999999999999999999974

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.11  E-value=0.027  Score=44.22  Aligned_cols=53  Identities=17%  Similarity=0.228  Sum_probs=42.9

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCC-----cEEEcCEEEE
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG-----QDILSHKLVL  332 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G-----~~i~A~~VI~  332 (486)
                      .++.+.+.+..+..|.++++|+.|+++..++ ++..+.+++.++     +++.||.||+
T Consensus        64 ~ei~~~l~~~l~~~GV~i~~~~~v~~v~~~~-~~~~v~~~~~~~~~~~~~~ie~D~vlv  121 (122)
T d1v59a2          64 GEVAKATQKFLKKQGLDFKLSTKVISAKRND-DKNVVEIVVEDTKTNKQENLEAEVLLV  121 (122)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSEEEEEEEEET-TTTEEEEEEEETTTTEEEEEEESEEEE
T ss_pred             hhhHHHHHHHHHhccceEEeCCEEEEEEEeC-CCcEEEEEEEeCCCCCeEEEEeCEEEE
Confidence            5889999999999999999999999998873 555556665543     3689999875

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.06  E-value=0.014  Score=48.14  Aligned_cols=35  Identities=23%  Similarity=0.223  Sum_probs=30.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-cEEEEccCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFY   57 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~-~VlvlE~~~~~   57 (486)
                      -.|||||||-+++=+|..|.|.|. +|.++.+++..
T Consensus        46 ~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~~   81 (153)
T d1gtea3          46 GAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFV   81 (153)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGG
T ss_pred             CEEEEECCChhHHHHHHHHHHcCCcceeEEEeCChh
Confidence            369999999999999999999985 58899887653

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=94.99  E-value=0.011  Score=49.85  Aligned_cols=34  Identities=24%  Similarity=0.276  Sum_probs=31.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      -.|+|||+|.+|+.||....+-|-+|.++|.+..
T Consensus        30 a~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~   63 (183)
T d1l7da1          30 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA   63 (183)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             cEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHH
Confidence            4799999999999999999999999999999743

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.61  E-value=0.055  Score=41.90  Aligned_cols=51  Identities=16%  Similarity=0.147  Sum_probs=39.9

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEe-CCC--cEEEcCEEEE
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL-ASG--QDILSHKLVL  332 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~-~~G--~~i~A~~VI~  332 (486)
                      .++.+.+.+..+..|.++++++.|++|..+  ++.. .|.+ .+|  +++.||.||+
T Consensus        63 ~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~--~~~~-~v~~~~~g~~~~i~~D~Vlv  116 (117)
T d1ebda2          63 KQMAAIIKKRLKKKGVEVVTNALAKGAEER--EDGV-TVTYEANGETKTIDADYVLV  116 (117)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESEEEEEEEEE--TTEE-EEEEEETTEEEEEEESEEEE
T ss_pred             chhHHHHHHHHHhcCCEEEcCCEEEEEEEc--CCEE-EEEEEeCCCEEEEEeEEEEE
Confidence            478899999999999999999999999876  3333 3333 455  4689999986

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=94.55  E-value=0.011  Score=50.47  Aligned_cols=35  Identities=17%  Similarity=0.159  Sum_probs=31.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ....|.|||+|--|++.|..|+++|++|.+..+++
T Consensus         6 ~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~   40 (189)
T d1n1ea2           6 YLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   40 (189)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred             eeceEEEECCCHHHHHHHHHHHHcCCeEEEEEecH
Confidence            44579999999999999999999999999998763

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=94.08  E-value=0.02  Score=46.60  Aligned_cols=37  Identities=19%  Similarity=0.309  Sum_probs=32.5

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCC--CcEEEEccCC
Q 011414           19 EPTAFDLIVIGTGLPESVISAAASASG--KSVLHLDPNP   55 (486)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G--~~VlvlE~~~   55 (486)
                      ++.+..|.|||+|..|.++|..|+..|  .++.++|.+.
T Consensus         2 m~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           2 MPNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             BTTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            445678999999999999999999998  4799999874

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.06  E-value=0.019  Score=49.14  Aligned_cols=32  Identities=22%  Similarity=0.227  Sum_probs=28.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      .|.|||.|..||.+|+.||+ |++|..+|-+..
T Consensus         2 kI~ViGlG~vGl~~a~~~a~-g~~V~g~Din~~   33 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPS   33 (196)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSCHH
T ss_pred             EEEEECCChhHHHHHHHHHC-CCcEEEEECCHH
Confidence            48999999999999998874 999999998854

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=94.06  E-value=0.079  Score=41.35  Aligned_cols=48  Identities=23%  Similarity=0.280  Sum_probs=40.2

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~  333 (486)
                      .++.+.+.+..+..|.++++++.|+++.    ++   .|+++||+++.||.||..
T Consensus        72 ~~~~~~~~~~l~~~GV~i~~~~~v~~~~----~~---~v~l~dg~~i~~D~vi~a  119 (121)
T d1d7ya2          72 ATLADFVARYHAAQGVDLRFERSVTGSV----DG---VVLLDDGTRIAADMVVVG  119 (121)
T ss_dssp             HHHHHHHHHHHHTTTCEEEESCCEEEEE----TT---EEEETTSCEEECSEEEEC
T ss_pred             HHHHHHHHHHHHHCCcEEEeCCEEEEEe----CC---EEEECCCCEEECCEEEEe
Confidence            4777888888899999999999999874    44   366899999999999853

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=93.78  E-value=0.085  Score=41.00  Aligned_cols=52  Identities=12%  Similarity=0.125  Sum_probs=40.8

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCC---cEEEcCEEEEC
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG---QDILSHKLVLD  333 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G---~~i~A~~VI~~  333 (486)
                      .++.+.+.+..+..|.++++++.|++|..+  ++. +.|++.++   +++.||.||+.
T Consensus        63 ~ei~~~l~~~l~~~Gv~i~~~~~v~~i~~~--~~~-v~v~~~~~~~~~~~~~D~vlvA  117 (119)
T d3lada2          63 EQVAKEAQKILTKQGLKILLGARVTGTEVK--NKQ-VTVKFVDAEGEKSQAFDKLIVA  117 (119)
T ss_dssp             HHHHHHHHHHHHHTTEEEEETCEEEEEEEC--SSC-EEEEEESSSEEEEEEESEEEEC
T ss_pred             chhHHHHHHHHHhcCceeecCcEEEEEEEe--CCE-EEEEEEECCCCEEEECCEEEEe
Confidence            588999999999999999999999999876  333 34544333   57899999863

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=93.69  E-value=0.054  Score=42.48  Aligned_cols=51  Identities=10%  Similarity=0.075  Sum_probs=41.4

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~  333 (486)
                      .++.+.+.+..+..|.++++++.|++|.-   ++++..| +++|+++.||.||+.
T Consensus        72 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~---~~~~~~v-~~dg~~i~~D~vi~a  122 (123)
T d1nhpa2          72 KEFTDVLTEEMEANNITIATGETVERYEG---DGRVQKV-VTDKNAYDADLVVVA  122 (123)
T ss_dssp             HHHHHHHHHHHHTTTEEEEESCCEEEEEC---SSBCCEE-EESSCEEECSEEEEC
T ss_pred             hhhHHHHHHHhhcCCeEEEeCceEEEEEc---CCCEEEE-EeCCCEEECCEEEEE
Confidence            46788888888999999999999999864   4454455 579999999999863

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=93.67  E-value=0.023  Score=43.58  Aligned_cols=34  Identities=9%  Similarity=0.049  Sum_probs=29.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ..+|+|||+|.+|.-.|..|++.+++|.++-+++
T Consensus        32 gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~   65 (107)
T d2gv8a2          32 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG   65 (107)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred             CCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence            4689999999999999999999999987776654

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.48  E-value=0.032  Score=46.16  Aligned_cols=31  Identities=16%  Similarity=0.172  Sum_probs=29.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (486)
                      .|-|||.|.-|+..|..|+++|++|.++|++
T Consensus         3 kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~   33 (162)
T d3cuma2           3 QIAFIGLGHMGAPMATNLLKAGYLLNVFDLV   33 (162)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSS
T ss_pred             EEEEEEEHHHHHHHHHHHHHCCCeEEEEECc
Confidence            4899999999999999999999999999986

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=93.47  E-value=0.076  Score=41.54  Aligned_cols=54  Identities=20%  Similarity=0.300  Sum_probs=41.6

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCC-C--cEEEcCEEEEC
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS-G--QDILSHKLVLD  333 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~-G--~~i~A~~VI~~  333 (486)
                      .++.+.+.+..+..|.++++|+.|++|..++ ++..+.+...+ |  +++.||.|++.
T Consensus        66 ~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~-~~~~v~~~~~~~g~~~~i~~D~vLvA  122 (123)
T d1dxla2          66 AEIRKQFQRSLEKQGMKFKLKTKVVGVDTSG-DGVKLTVEPSAGGEQTIIEADVVLVS  122 (123)
T ss_dssp             HHHHHHHHHHHHHSSCCEECSEEEEEEECSS-SSEEEEEEESSSCCCEEEEESEEECC
T ss_pred             hcchhhhhhhhhcccceEEcCCceEEEEEcc-CeEEEEEEECCCCeEEEEEcCEEEEc
Confidence            5888999999999999999999999998752 55444555433 3  34899998853

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.44  E-value=0.03  Score=47.08  Aligned_cols=32  Identities=13%  Similarity=0.184  Sum_probs=29.1

Q ss_pred             cEEEE-CCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           24 DLIVI-GTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        24 DViII-GaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      .|+|| |+|--|.+.|..|+++|++|++..|+.
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            47888 789999999999999999999998864

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=93.05  E-value=0.047  Score=45.73  Aligned_cols=33  Identities=15%  Similarity=0.176  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      -+|-|||-|.-|...|..|.++|++|.+++++.
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~   35 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            578999999999999999999999999999864

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.01  E-value=0.034  Score=46.90  Aligned_cols=30  Identities=20%  Similarity=0.265  Sum_probs=28.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEcc
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDP   53 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~   53 (486)
                      .|.|||+|--|.+.|..|+++|++|.+.-+
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r   31 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEe
Confidence            689999999999999999999999999854

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.72  E-value=0.05  Score=44.81  Aligned_cols=31  Identities=26%  Similarity=0.291  Sum_probs=29.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (486)
                      .|-|||.|.-|...|..|+++|++|.++|++
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~   32 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRN   32 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCeEEEEeCC
Confidence            4889999999999999999999999999986

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.62  E-value=0.0034  Score=55.71  Aligned_cols=36  Identities=0%  Similarity=-0.052  Sum_probs=33.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (486)
                      ..|+|||+|..|+-+|..|++.|.+|+++++++.++
T Consensus       181 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~r~~~~~  216 (233)
T d1djqa3         181 APRLIADATFTGHRVAREIEEANPQIAIPYKRETIA  216 (233)
T ss_dssp             SCCCHHHHHHHHHHHHHTTTSSCTTSCCCCCCCCCC
T ss_pred             CceeEecCchHHHHHHHHHHhcCCceEEEEeccccc
Confidence            569999999999999999999999999999998864

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.29  E-value=0.066  Score=41.19  Aligned_cols=36  Identities=11%  Similarity=0.065  Sum_probs=31.7

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 011414           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (486)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (486)
                      +.+...|+|||+|-.|..-|..|.+.|.+|+|+...
T Consensus         9 ~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~   44 (113)
T d1pjqa1           9 QLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (113)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             EeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            345568999999999999999999999999998754

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.15  E-value=0.097  Score=43.00  Aligned_cols=37  Identities=14%  Similarity=0.203  Sum_probs=32.0

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCC--cEEEEccCC
Q 011414           19 EPTAFDLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (486)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~--~VlvlE~~~   55 (486)
                      .++...|.|||+|..|.++|+.|...|.  ++.++|.+.
T Consensus        16 ~~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~   54 (159)
T d2ldxa1          16 KLSRCKITVVGVGDVGMACAISILLKGLADELALVDADT   54 (159)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCH
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            3455689999999999999999999986  799999764

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=92.12  E-value=0.07  Score=44.60  Aligned_cols=32  Identities=19%  Similarity=0.311  Sum_probs=29.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (486)
                      ..|-|||.|.-|...|..|.++|++|.++|++
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~   33 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRT   33 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECC
Confidence            36889999999999999999999999999875

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=91.97  E-value=0.15  Score=39.38  Aligned_cols=54  Identities=17%  Similarity=0.119  Sum_probs=42.0

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEE---eCCCcEEEcCEEEEC
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVR---LASGQDILSHKLVLD  333 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~---~~~G~~i~A~~VI~~  333 (486)
                      .++.+.+.+..+..|.++++++.|++|+.+. +++...+.   ..+++++.||.||+.
T Consensus        63 ~~~~~~~~~~l~~~gI~v~~~~~v~~i~~~~-~~~~~~~~~~~~~~~~~i~~D~Vi~a  119 (121)
T d1mo9a2          63 NETRAYVLDRMKEQGMEIISGSNVTRIEEDA-NGRVQAVVAMTPNGEMRIETDFVFLG  119 (121)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCEEEEEEECT-TSBEEEEEEEETTEEEEEECSCEEEC
T ss_pred             cchhhhhhhhhhccccEEEcCCEEEEEEecC-CceEEEEEEEeCCCCEEEEcCEEEEE
Confidence            4778888888899999999999999998763 56554443   345677999999863

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=91.87  E-value=0.058  Score=44.68  Aligned_cols=32  Identities=34%  Similarity=0.377  Sum_probs=29.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      .|+|+|+|..|+.++..+...|.+|.++|+++
T Consensus        29 ~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~   60 (170)
T d1e3ja2          29 TVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP   60 (170)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEEcccccchhhHhhHhhhcccccccchHH
Confidence            58999999999999999988999999999874

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=91.84  E-value=0.081  Score=41.64  Aligned_cols=37  Identities=16%  Similarity=0.069  Sum_probs=33.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (486)
                      ..+|+|||+|-+.+-.|..|++-+.+|.++-|++..-
T Consensus        27 ~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~~   63 (126)
T d1trba2          27 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR   63 (126)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC
T ss_pred             CCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccccc
Confidence            4589999999999999999999999999999988653

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=91.80  E-value=0.14  Score=42.11  Aligned_cols=34  Identities=12%  Similarity=0.105  Sum_probs=31.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCC--cEEEEccC
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGK--SVLHLDPN   54 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~--~VlvlE~~   54 (486)
                      ....|.|||+|..|.++|+.|+..|.  ++.++|.+
T Consensus        19 ~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~   54 (160)
T d1i0za1          19 PNNKITVVGVGQVGMACAISILGKSLADELALVDVL   54 (160)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            35689999999999999999999997  79999986

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=91.77  E-value=0.086  Score=48.43  Aligned_cols=53  Identities=25%  Similarity=0.318  Sum_probs=43.5

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeC--CCc--EEEcCEEEE
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA--SGQ--DILSHKLVL  332 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~--~G~--~i~A~~VI~  332 (486)
                      ..+.+.|.+.+...|.+|+++++|++|+.++ +|+++||...  +++  .|+|+.||+
T Consensus       152 ~~~~~~l~~~a~~~gv~i~~~t~v~~li~d~-~G~V~Gv~~~~~~~~~~~i~Ak~VIl  208 (322)
T d1d4ca2         152 AHVAQVLWDNAVKRGTDIRLNSRVVRILEDA-SGKVTGVLVKGEYTGYYVIKADAVVI  208 (322)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTEEEEEEECCS-SSCCCEEEEEETTTEEEEEECSEEEE
T ss_pred             HHHHHHHHHHHHhcCceEEEeeecccccccc-cccccceEEEeecccEEEEeCCeEEE
Confidence            4788999999999999999999999998863 7788888753  232  489999995

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.69  E-value=0.051  Score=44.16  Aligned_cols=33  Identities=15%  Similarity=0.171  Sum_probs=30.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEcc
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDP   53 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~   53 (486)
                      +...|+|||||-.|+.-|..|.++|.+|+|+..
T Consensus        12 ~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap   44 (150)
T d1kyqa1          12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSP   44 (150)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence            456799999999999999999999999999953

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=91.36  E-value=0.18  Score=39.37  Aligned_cols=54  Identities=7%  Similarity=0.121  Sum_probs=41.4

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCC--cEEEcCEEEEC
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG--QDILSHKLVLD  333 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G--~~i~A~~VI~~  333 (486)
                      .++.+.+.+..+..|.++++++.|+++..++ ++..+.+...+|  +++.||.||+.
T Consensus        67 ~~~~~~l~~~l~~~gv~~~~~~~v~~v~~~~-~g~~v~~~~~~g~~~~i~~D~vl~A  122 (125)
T d1ojta2          67 RDLVKVWQKQNEYRFDNIMVNTKTVAVEPKE-DGVYVTFEGANAPKEPQRYDAVLVA  122 (125)
T ss_dssp             HHHHHHHHHHHGGGEEEEECSCEEEEEEEET-TEEEEEEESSSCCSSCEEESCEEEC
T ss_pred             hhHHHHHHHHHHHcCcccccCcEEEEEEEcC-CcEEEEEEeCCCCeEEEEcCEEEEe
Confidence            5889999999999999999999999998762 443333333444  47999999864

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=91.34  E-value=0.098  Score=41.13  Aligned_cols=38  Identities=18%  Similarity=0.115  Sum_probs=34.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      ..+|+|||+|-+.+-.|..|++-..+|.++-+.+..-+
T Consensus        30 gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~~   67 (126)
T d1fl2a2          30 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA   67 (126)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCS
T ss_pred             CceEEEEeCCHHHHHHHHhhhccCCceEEEeccccccc
Confidence            45899999999999999999999999999999887643

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.00  E-value=0.12  Score=40.78  Aligned_cols=39  Identities=18%  Similarity=0.155  Sum_probs=35.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (486)
                      ...||+|||+|-+.+-.|..|++--.+|.++-|++.+.+
T Consensus        33 rgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ra   71 (130)
T d1vdca2          33 RNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA   71 (130)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS
T ss_pred             CCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecccccc
Confidence            356999999999999999999999999999999988754

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.96  E-value=0.082  Score=43.84  Aligned_cols=32  Identities=28%  Similarity=0.305  Sum_probs=29.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC-cEEEEccCC
Q 011414           24 DLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~-~VlvlE~~~   55 (486)
                      .|+|+|+|..|+.++..+...|. +|.+.|+++
T Consensus        29 ~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~   61 (171)
T d1pl8a2          29 KVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA   61 (171)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             EEEEECCCccHHHHHHHHHHcCCceEEeccCCH
Confidence            59999999999999999999998 799999874

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.70  E-value=0.08  Score=43.33  Aligned_cols=26  Identities=23%  Similarity=0.175  Sum_probs=23.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcE
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSV   48 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V   48 (486)
                      ..|||||+|..|+-+|..|++.|.++
T Consensus        30 krVvVIGgG~~g~d~a~~~~r~G~~~   55 (162)
T d1ps9a2          30 NKVAIIGCGGIGFDTAMYLSQPGEST   55 (162)
T ss_dssp             SEEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred             CceEEEcCchhHHHHHHHHHHcCCcc
Confidence            47999999999999999999999753

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.59  E-value=0.12  Score=41.75  Aligned_cols=35  Identities=23%  Similarity=0.353  Sum_probs=30.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCC--cEEEEccCC
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~--~VlvlE~~~   55 (486)
                      ....|.|||+|..|.++|..|+..|.  ++.++|.++
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~   41 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc
Confidence            34579999999999999999999986  799999764

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=90.45  E-value=0.12  Score=42.62  Aligned_cols=31  Identities=19%  Similarity=0.414  Sum_probs=27.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--cEEEEccC
Q 011414           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPN   54 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~--~VlvlE~~   54 (486)
                      .|.|||.|+-|.+.|..|.+.|+  +|..+|++
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~   35 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDIN   35 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECC
Confidence            48999999999999999999996  67778886

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=90.24  E-value=0.13  Score=41.66  Aligned_cols=33  Identities=15%  Similarity=0.120  Sum_probs=29.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      .|-|||.|..|...|..|+++|++|.+.+++..
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~   34 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRS   34 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTCC
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchh
Confidence            488999999999999999999999999987543

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=90.14  E-value=0.21  Score=38.15  Aligned_cols=40  Identities=18%  Similarity=0.330  Sum_probs=34.4

Q ss_pred             CCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           17 PIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        17 ~~~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      ++.+....|.|+|+|==|-..|.+..+-|++|.++|.++.
T Consensus         6 ~~~~~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2           6 ALRPAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             TTSTTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCCCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            3455566899999999999999999999999999998744

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.02  E-value=0.12  Score=42.72  Aligned_cols=33  Identities=15%  Similarity=0.144  Sum_probs=29.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      .|+|+|+|-.|+.++..+...|.+|.+++.++.
T Consensus        30 ~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~   62 (168)
T d1piwa2          30 KVGIVGLGGIGSMGTLISKAMGAETYVISRSSR   62 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEEESSST
T ss_pred             EEEEECCCCcchhHHHHhhhccccccccccchh
Confidence            588999999999988887788999999999864

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=89.98  E-value=0.15  Score=41.28  Aligned_cols=32  Identities=19%  Similarity=0.246  Sum_probs=29.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      -+||+|.|-.|..++..|.+.|++|+++|.++
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~   36 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccc
Confidence            39999999999999999999999999999864

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.90  E-value=0.12  Score=42.57  Aligned_cols=32  Identities=25%  Similarity=0.174  Sum_probs=29.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      .|+|+|+|..|+.++..+...|.+|.++++++
T Consensus        30 ~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~   61 (166)
T d1llua2          30 WVAISGIGGLGHVAVQYARAMGLHVAAIDIDD   61 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeeccccHHHHHHHHHHcCCccceecchh
Confidence            59999999999999998888999999998863

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=89.80  E-value=0.14  Score=41.13  Aligned_cols=32  Identities=22%  Similarity=0.278  Sum_probs=28.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC-cEEEEccCC
Q 011414           24 DLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~-~VlvlE~~~   55 (486)
                      .|.|||+|..|.++|..|+..|. +++++|.+.
T Consensus         3 KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~   35 (142)
T d1uxja1           3 KISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCcceEEEEeecc
Confidence            68999999999999999999886 899999765

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=89.51  E-value=0.17  Score=40.63  Aligned_cols=32  Identities=31%  Similarity=0.381  Sum_probs=28.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--cEEEEccCC
Q 011414           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~--~VlvlE~~~   55 (486)
                      .|.|||+|..|.++|..|...|.  ++.++|.+.
T Consensus         3 Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~   36 (143)
T d1llda1           3 KLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   36 (143)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            58999999999999999999987  789999763

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.45  E-value=0.16  Score=43.19  Aligned_cols=34  Identities=24%  Similarity=0.240  Sum_probs=30.3

Q ss_pred             CcccEEEEC-CChhHHHHHHHHhhCCCcEEEEccC
Q 011414           21 TAFDLIVIG-TGLPESVISAAASASGKSVLHLDPN   54 (486)
Q Consensus        21 ~~~DViIIG-aGl~GL~aA~~La~~G~~VlvlE~~   54 (486)
                      ....|+|+| +|..|..++..|.++|++|.++.|+
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~   36 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRD   36 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcC
Confidence            345699999 6999999999999999999999876

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=89.43  E-value=0.21  Score=41.24  Aligned_cols=34  Identities=12%  Similarity=0.146  Sum_probs=30.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 011414           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (486)
                      ...+|+|+|+|=++-++++.|++.|.+|.|+.|+
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt   50 (170)
T d1nyta1          17 PGLRILLIGAGGASRGVLLPLLSLDCAVTITNRT   50 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCEEEEECCcHHHHHHHHHhcccceEEEeccch
Confidence            3457999999999999999999999999999875

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=89.24  E-value=0.19  Score=40.29  Aligned_cols=32  Identities=13%  Similarity=0.236  Sum_probs=28.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--cEEEEccCC
Q 011414           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~--~VlvlE~~~   55 (486)
                      .|.|||+|..|.++|..|...|.  ++.++|.+.
T Consensus         3 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~   36 (142)
T d1y6ja1           3 KVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   36 (142)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccC
Confidence            68999999999999999999987  799999776

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=88.45  E-value=0.18  Score=40.65  Aligned_cols=32  Identities=22%  Similarity=0.355  Sum_probs=28.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--cEEEEccCC
Q 011414           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~--~VlvlE~~~   55 (486)
                      .|.|||+|..|.++|..|...|.  ++.++|.+.
T Consensus         3 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   36 (146)
T d1hyha1           3 KIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (146)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             eEEEECcCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            68999999999999999998885  788888764

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=88.36  E-value=0.24  Score=37.93  Aligned_cols=51  Identities=12%  Similarity=0.085  Sum_probs=37.4

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEe-CCCcEEEcCEEEEC
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL-ASGQDILSHKLVLD  333 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~-~~G~~i~A~~VI~~  333 (486)
                      .++.+.+.+..+..|.++++++.|+++.    ++..+.... .+++++.||.||+.
T Consensus        62 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~----~~~~~~~~~~~~~~~i~~D~vi~A  113 (115)
T d1lvla2          62 SELTAPVAESLKKLGIALHLGHSVEGYE----NGCLLANDGKGGQLRLEADRVLVA  113 (115)
T ss_dssp             HHHHHHHHHHHHHHTCEEETTCEEEEEE----TTEEEEECSSSCCCEECCSCEEEC
T ss_pred             chhHHHHHHHHHhhcceEEcCcEEEEEc----CCeEEEEEcCCCeEEEEcCEEEEe
Confidence            5788888899999999999999999983    343322221 23357999998853

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=88.32  E-value=0.24  Score=39.61  Aligned_cols=32  Identities=19%  Similarity=0.210  Sum_probs=29.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--cEEEEccCC
Q 011414           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~--~VlvlE~~~   55 (486)
                      .|.|||+|-.|.++|..|+..|.  ++.++|.++
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~   35 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEecccc
Confidence            58999999999999999999984  899999876

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=88.31  E-value=0.74  Score=39.82  Aligned_cols=47  Identities=21%  Similarity=0.166  Sum_probs=35.9

Q ss_pred             HHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEECCC
Q 011414          287 RRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS  335 (486)
Q Consensus       287 r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~p~  335 (486)
                      +.....-+.-+....|..+..+  ++++++|++.+|.+++|+.||+..-
T Consensus        75 ~~l~~~~nL~i~q~~V~dli~e--~~~v~gV~t~~G~~~~AkaVILtTG  121 (230)
T d2cula1          75 YLLEGLRPLHLFQATATGLLLE--GNRVVGVRTWEGPPARGEKVVLAVG  121 (230)
T ss_dssp             HHHHTCTTEEEEECCEEEEEEE--TTEEEEEEETTSCCEECSEEEECCT
T ss_pred             HHHhhhcCHHHHhccceeeEec--ccceeeEEeccccEEEEeEEEEccC
Confidence            3334444445567788888887  7889999999999999999997544

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=88.10  E-value=0.22  Score=40.28  Aligned_cols=32  Identities=16%  Similarity=0.189  Sum_probs=29.5

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      .+.|||+|.-|.+.|..|.++|++|.+.+++.
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~   33 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPHELIISGSSL   33 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             EEEEEeccHHHHHHHHHHHhCCCeEEEEcChH
Confidence            58899999999999999999999999998864

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=88.01  E-value=0.22  Score=41.45  Aligned_cols=32  Identities=19%  Similarity=0.279  Sum_probs=29.3

Q ss_pred             EEEECCChhHHHHHHHHhhCC-CcEEEEccCCC
Q 011414           25 LIVIGTGLPESVISAAASASG-KSVLHLDPNPF   56 (486)
Q Consensus        25 ViIIGaGl~GL~aA~~La~~G-~~VlvlE~~~~   56 (486)
                      |+|+|+|-.||.+...+...| .+|.++|.++.
T Consensus        33 VlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~   65 (176)
T d1d1ta2          33 CVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKD   65 (176)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             EEEECCCchhHHHHHHHHHcCCceEEEecCcHH
Confidence            899999999999999999999 68999998764

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=87.48  E-value=0.19  Score=41.94  Aligned_cols=33  Identities=18%  Similarity=0.255  Sum_probs=29.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC-cEEEEccCCC
Q 011414           24 DLIVIGTGLPESVISAAASASGK-SVLHLDPNPF   56 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~-~VlvlE~~~~   56 (486)
                      .|+|+|+|..|+.+...+...|. +|.++|+++.
T Consensus        31 ~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~   64 (182)
T d1vj0a2          31 TVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPN   64 (182)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHH
T ss_pred             EEEEECCCccchhheecccccccccccccccccc
Confidence            58899999999999999988996 7999998653

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=87.48  E-value=0.26  Score=43.82  Aligned_cols=36  Identities=17%  Similarity=0.254  Sum_probs=31.8

Q ss_pred             CcccEEEECC-ChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           21 TAFDLIVIGT-GLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        21 ~~~DViIIGa-Gl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      ++..|+|+|| |.-|...+.+|.++|++|.++.|+..
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~   38 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVREST   38 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCc
Confidence            3457999996 99999999999999999999998753

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.07  E-value=0.83  Score=35.26  Aligned_cols=53  Identities=13%  Similarity=-0.007  Sum_probs=39.0

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCe-EEEEEeCCCc------EEEcCEEEE
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGS-YKGVRLASGQ------DILSHKLVL  332 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~-~~gV~~~~G~------~i~A~~VI~  332 (486)
                      .++.+.+.+..+..|.++++|+.|++|..+. +|. +..+....|+      .+.||.||+
T Consensus        63 ~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~-~g~~v~~~~~~~g~~~~~~~~~~~D~vl~  122 (125)
T d3grsa2          63 SMISTNCTEELENAGVEVLKFSQVKEVKKTL-SGLEVSMVTAVPGRLPVMTMIPDVDCLLW  122 (125)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTEEEEEEEEET-TEEEEEEEECCTTSCCEEEEEEEESEEEE
T ss_pred             hHHHHHHHHHHHHCCCEEEeCCEEEEEEEcC-CeEEEEEEEccCCcCcCccccccCCEEEE
Confidence            5788999999999999999999999998763 442 2223334443      357888875

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=86.85  E-value=0.29  Score=39.23  Aligned_cols=32  Identities=19%  Similarity=0.116  Sum_probs=27.5

Q ss_pred             cEEEECC-ChhHHHHHHHHhhCCC--cEEEEccCC
Q 011414           24 DLIVIGT-GLPESVISAAASASGK--SVLHLDPNP   55 (486)
Q Consensus        24 DViIIGa-Gl~GL~aA~~La~~G~--~VlvlE~~~   55 (486)
                      .|.|||| |..|.++|..|+..|.  .+.++|.+.
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~   36 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccc
Confidence            4899995 9999999999999986  577888763

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=86.78  E-value=0.22  Score=44.13  Aligned_cols=33  Identities=15%  Similarity=0.263  Sum_probs=30.5

Q ss_pred             ccEEEECC-ChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           23 FDLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGa-Gl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      +.|+|.|| |+-|...+.+|.+.|++|..+++++
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            46999997 9999999999999999999999875

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=86.64  E-value=0.28  Score=39.37  Aligned_cols=32  Identities=13%  Similarity=0.179  Sum_probs=28.1

Q ss_pred             cEEEECC-ChhHHHHHHHHhhCCC--cEEEEccCC
Q 011414           24 DLIVIGT-GLPESVISAAASASGK--SVLHLDPNP   55 (486)
Q Consensus        24 DViIIGa-Gl~GL~aA~~La~~G~--~VlvlE~~~   55 (486)
                      +|.|||+ |..|.++|..|+..|.  ++.++|.+.
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~   36 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH   36 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchh
Confidence            5899995 9999999999999994  888888763

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=86.61  E-value=0.27  Score=39.30  Aligned_cols=32  Identities=16%  Similarity=0.101  Sum_probs=28.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--cEEEEccCC
Q 011414           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~--~VlvlE~~~   55 (486)
                      .|.|||+|..|.++|..|+..|.  ++.++|.++
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   35 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEeccc
Confidence            68999999999999999998885  588899763

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=86.50  E-value=0.26  Score=40.26  Aligned_cols=32  Identities=25%  Similarity=0.202  Sum_probs=28.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      .|+|+|+|-.|+.++..+...|.+|.+.+.++
T Consensus        30 ~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~   61 (168)
T d1rjwa2          30 WVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGD   61 (168)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEeecccchhhhhHHHhcCCCeEeccCCCH
Confidence            48899999999999999999999999998754

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=86.50  E-value=0.29  Score=40.13  Aligned_cols=32  Identities=22%  Similarity=0.200  Sum_probs=28.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      .|+|+|+|-.|+.++..+...|.+|.+++.++
T Consensus        33 ~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~   64 (168)
T d1uufa2          33 KVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSE   64 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             EEEEeccchHHHHHHHHhhcccccchhhccch
Confidence            58999999999999988888999999998864

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=86.20  E-value=0.39  Score=39.39  Aligned_cols=34  Identities=26%  Similarity=0.211  Sum_probs=30.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC-cEEEEccCC
Q 011414           22 AFDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~-~VlvlE~~~   55 (486)
                      ...|+|+|+|=++-+++..|.+.|. +|.|+.|+.
T Consensus        17 ~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~   51 (167)
T d1npya1          17 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV   51 (167)
T ss_dssp             TSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccH
Confidence            4579999999999999999999995 799987753

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=85.55  E-value=0.44  Score=38.39  Aligned_cols=33  Identities=15%  Similarity=0.319  Sum_probs=28.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-cEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~-~VlvlE~~~   55 (486)
                      ..|.|||+|..|.++|..|.+.+. ++.++|.++
T Consensus         4 ~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~   37 (150)
T d1t2da1           4 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   37 (150)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccC
Confidence            479999999999999999998885 688899765

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=85.44  E-value=0.34  Score=41.51  Aligned_cols=36  Identities=17%  Similarity=0.212  Sum_probs=31.2

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 011414           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (486)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (486)
                      +....+|+|||+|-+|.-+|..|++.+.++.++=+.
T Consensus        29 ~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~   64 (235)
T d1w4xa2          29 DFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRT   64 (235)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESS
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHhhhccccccccc
Confidence            345578999999999999999999999998887665

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=85.40  E-value=0.63  Score=35.72  Aligned_cols=35  Identities=23%  Similarity=0.235  Sum_probs=30.7

Q ss_pred             cccEEEECCCh-----------hHHHHHHHHhhCCCcEEEEccCCC
Q 011414           22 AFDLIVIGTGL-----------PESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        22 ~~DViIIGaGl-----------~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      ...|+|||+|.           ++..|+.+|.+.|++|.++-.|+.
T Consensus         4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPe   49 (121)
T d1a9xa4           4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPE   49 (121)
T ss_dssp             SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTT
T ss_pred             CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChh
Confidence            34699999994           788999999999999999999864

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=85.21  E-value=0.33  Score=40.19  Aligned_cols=32  Identities=25%  Similarity=0.413  Sum_probs=28.5

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC-cEEEEccCC
Q 011414           24 DLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~-~VlvlE~~~   55 (486)
                      .|+|+|+|-.|+.++..+...|. +|.+.|.++
T Consensus        30 ~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~   62 (174)
T d1jqba2          30 SVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP   62 (174)
T ss_dssp             CEEEECCSHHHHHHHHHHHTTTCSCEEEECCCH
T ss_pred             EEEEEcCCcchhhhhhhhhcccccccccccchh
Confidence            69999999999999999888896 799999864

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=84.91  E-value=0.37  Score=38.80  Aligned_cols=32  Identities=9%  Similarity=0.240  Sum_probs=28.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCC-CcEEEEccCC
Q 011414           24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNP   55 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G-~~VlvlE~~~   55 (486)
                      .+.+||+|.-|.+.|..|.++| ++|.+.+++.
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~   34 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCCh
Confidence            5889999999999998888777 9999999874

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=84.70  E-value=0.35  Score=40.90  Aligned_cols=32  Identities=31%  Similarity=0.336  Sum_probs=26.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC-cEEEEccCC
Q 011414           24 DLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~-~VlvlE~~~   55 (486)
                      .|+|+|+|..|+.++..+...|. +|.+.|.++
T Consensus        28 tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~   60 (195)
T d1kola2          28 TVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP   60 (195)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             EEEEECcCHHHHHHHHHHHhhcccceeeecccc
Confidence            68999999999999988877665 788888763

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.66  E-value=0.39  Score=39.21  Aligned_cols=33  Identities=21%  Similarity=0.173  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      ..|+|||.|--|-..|..|+..|-+|+|.|..+
T Consensus        25 k~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp   57 (163)
T d1li4a1          25 KVAVVAGYGDVGKGCAQALRGFGARVIITEIDP   57 (163)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence            469999999999999999999999999999975

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.60  E-value=0.54  Score=40.94  Aligned_cols=49  Identities=16%  Similarity=0.162  Sum_probs=38.9

Q ss_pred             CCCCCCCcccEEEECCCh-hHHHHHHHHhhCCCcEEEEccCCCCCCCccccc
Q 011414           15 YPPIEPTAFDLIVIGTGL-PESVISAAASASGKSVLHLDPNPFYGSHFSSLS   65 (486)
Q Consensus        15 ~~~~~~~~~DViIIGaGl-~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~   65 (486)
                      .|+|+..  -++|.||+= -|..+|..|+++|.+|.+.+++..-+.....+.
T Consensus         2 ~psl~gK--~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~   51 (237)
T d1uzma1           2 KPPFVSR--SVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLFGVE   51 (237)
T ss_dssp             CCCCCCC--EEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTSEEEE
T ss_pred             CCCCCCC--EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhcCceEEE
Confidence            5777764  377777764 789999999999999999999987777665554

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=84.09  E-value=0.43  Score=37.95  Aligned_cols=32  Identities=19%  Similarity=0.234  Sum_probs=28.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--cEEEEccCC
Q 011414           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~--~VlvlE~~~   55 (486)
                      .|.|||+|..|.++|..|+..|.  ++.++|.++
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~   35 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccc
Confidence            58999999999999999998874  799999764

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=83.69  E-value=0.48  Score=39.13  Aligned_cols=33  Identities=18%  Similarity=0.195  Sum_probs=29.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC-cEEEEccCCC
Q 011414           24 DLIVIGTGLPESVISAAASASGK-SVLHLDPNPF   56 (486)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~-~VlvlE~~~~   56 (486)
                      .|+|+|+|--|+.++..+...|. +|.+.|.++.
T Consensus        31 ~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~   64 (174)
T d1e3ia2          31 TCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGE   64 (174)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             EEEEECCChHHHHHHHHHHHhCCceeeeeccchH
Confidence            58999999999999999999997 5888888754

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=83.50  E-value=1.4  Score=39.73  Aligned_cols=42  Identities=31%  Similarity=0.318  Sum_probs=37.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCc
Q 011414           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (486)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (486)
                      ...|||||||+|++||+||+.|+++|++|+||||+...||..
T Consensus         3 ~~~~DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~~~~~g~S   44 (336)
T d2bs2a2           3 VQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHS   44 (336)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGGGSGG
T ss_pred             ceecCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCch
Confidence            356899999999999999999999999999999998777643

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=83.14  E-value=0.63  Score=38.91  Aligned_cols=35  Identities=17%  Similarity=0.137  Sum_probs=30.8

Q ss_pred             CcccEEEEC-CChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           21 TAFDLIVIG-TGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        21 ~~~DViIIG-aGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      +...|+|.| +|-.|..+|..|++.|.+|.++.|+.
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~   57 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL   57 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence            445688888 68899999999999999999999974

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=83.09  E-value=0.77  Score=35.61  Aligned_cols=36  Identities=19%  Similarity=0.408  Sum_probs=31.5

Q ss_pred             CcccEEEECCCh-----------hHHHHHHHHhhCCCcEEEEccCCC
Q 011414           21 TAFDLIVIGTGL-----------PESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        21 ~~~DViIIGaGl-----------~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      ....|+|||+|.           ++..|..+|.+.|++|.++-.|+.
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~   52 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPA   52 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTT
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchH
Confidence            445799999995           788999999999999999999864

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.01  E-value=0.59  Score=43.10  Aligned_cols=35  Identities=20%  Similarity=0.268  Sum_probs=30.6

Q ss_pred             CcccEEEEC-CChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           21 TAFDLIVIG-TGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        21 ~~~DViIIG-aGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      +...|+|.| +|+-|..++..|.++|++|+++++..
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~   49 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKK   49 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCC
Confidence            345699998 89999999999999999999998643

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=82.89  E-value=0.59  Score=41.63  Aligned_cols=34  Identities=18%  Similarity=0.206  Sum_probs=30.0

Q ss_pred             ccEEEECC-ChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414           23 FDLIVIGT-GLPESVISAAASASGKSVLHLDPNPF   56 (486)
Q Consensus        23 ~DViIIGa-Gl~GL~aA~~La~~G~~VlvlE~~~~   56 (486)
                      -.|+|+|| |.-|...+.+|.++|++|.++.|+..
T Consensus         4 ~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   38 (312)
T d1qyda_           4 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV   38 (312)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCc
Confidence            45999995 99999999999999999999988644

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=82.38  E-value=0.77  Score=41.13  Aligned_cols=32  Identities=9%  Similarity=-0.005  Sum_probs=26.3

Q ss_pred             cEEEEC-CChhHHHHHHHHhhCCCcEEEEccCC
Q 011414           24 DLIVIG-TGLPESVISAAASASGKSVLHLDPNP   55 (486)
Q Consensus        24 DViIIG-aGl~GL~aA~~La~~G~~VlvlE~~~   55 (486)
                      -+||.| +|=-|..+|..|+++|.+|.+.+++.
T Consensus        27 ~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~   59 (294)
T d1w6ua_          27 VAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM   59 (294)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            355665 56678999999999999999999864

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.64  E-value=0.5  Score=40.33  Aligned_cols=40  Identities=20%  Similarity=0.224  Sum_probs=32.6

Q ss_pred             HHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC
Q 011414          289 AAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (486)
Q Consensus       289 ~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~  333 (486)
                      ++..|.++++++.|++|..+  ++   .|++++|+++.+|.+|+.
T Consensus        93 ~~~~gI~~~~g~~V~~id~~--~~---~V~l~dG~~i~~d~lViA  132 (213)
T d1m6ia1          93 IENGGVAVLTGKKVVQLDVR--DN---MVKLNDGSQITYEKCLIA  132 (213)
T ss_dssp             STTCEEEEEETCCEEEEEGG--GT---EEEETTSCEEEEEEEEEC
T ss_pred             HHHCCeEEEeCCEEEEeecc--Cc---eeeeccceeeccceEEEe
Confidence            35788999999999999654  33   577899999999988853

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=81.57  E-value=0.89  Score=34.87  Aligned_cols=46  Identities=17%  Similarity=0.173  Sum_probs=37.2

Q ss_pred             chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE
Q 011414          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (486)
Q Consensus       279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~  332 (486)
                      .++.+.+.+..+..|.++++|+.|+++..   +    +| +.+++.+.||.||.
T Consensus        72 ~~~~~~~~~~l~~~GV~~~~~~~v~~~~~---~----~v-~~~~~~i~~D~vi~  117 (122)
T d1xhca2          72 EELSNMIKDMLEETGVKFFLNSELLEANE---E----GV-LTNSGFIEGKVKIC  117 (122)
T ss_dssp             HHHHHHHHHHHHHTTEEEECSCCEEEECS---S----EE-EETTEEEECSCEEE
T ss_pred             HHHHHHHHHHHHHCCcEEEeCCEEEEEeC---C----EE-EeCCCEEECCEEEE
Confidence            47788888889999999999999998732   2    23 35888999999885

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=80.98  E-value=2  Score=38.51  Aligned_cols=55  Identities=15%  Similarity=0.066  Sum_probs=40.2

Q ss_pred             hHHHHHHHHHHHcCc--EEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEECCC
Q 011414          280 ELPQAFCRRAAVKGC--LYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS  335 (486)
Q Consensus       280 ~L~qal~r~~~~~Gg--~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~p~  335 (486)
                      ++.+=|.+.++.++-  .|++++.|+++..++ +...+.|++.++++++||.||+..-
T Consensus        86 e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de-~~~~W~V~~~~~~~~~~~~~i~atG  142 (298)
T d1w4xa1          86 EILRYINFVADKFDLRSGITFHTTVTAAAFDE-ATNTWTVDTNHGDRIRARYLIMASG  142 (298)
T ss_dssp             HHHHHHHHHHHHTTGGGGEECSCCEEEEEEET-TTTEEEEEETTCCEEEEEEEEECCC
T ss_pred             hHHHHHHHHHHHcCCcccccCCcEEEEEEEec-CCCceeeccccccccccceEEEeec
Confidence            344444455555554  599999999999874 4445789999999999999996543

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=80.85  E-value=0.99  Score=41.50  Aligned_cols=55  Identities=18%  Similarity=0.194  Sum_probs=36.2

Q ss_pred             chHHHHHHHHHHHcC-cEEEeCCceeEEEEecCCCeEEEEEeC--CC-----cEEEcCEEEEC
Q 011414          279 GELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRLA--SG-----QDILSHKLVLD  333 (486)
Q Consensus       279 ~~L~qal~r~~~~~G-g~i~l~~~V~~I~~~~~~g~~~gV~~~--~G-----~~i~A~~VI~~  333 (486)
                      ..........++..| .+|++++.|++|+.+.+++.+++|+..  ++     ++++||.||+.
T Consensus       218 ~s~~~~yl~~a~~~gn~~i~~~t~V~~I~~~~~g~~~v~v~~~~~~~~~~~~~~i~Ak~VVLa  280 (367)
T d1n4wa1         218 QSLDKTYLAAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLFLG  280 (367)
T ss_dssp             CCTTTTHHHHHHHTTSEEEEESEEEEEEEECTTSSEEEEEEEECTTCCEEEEEEEEEEEEEEC
T ss_pred             cChhHhhhHHHHhCCCeEEECCCEEEEEEEcCCCCEEEEEEEECCCCcceeEEEEecCEEEEe
Confidence            334444445566677 799999999999987433345555542  23     35789999964

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=80.72  E-value=0.72  Score=37.83  Aligned_cols=31  Identities=23%  Similarity=0.289  Sum_probs=27.6

Q ss_pred             EEEECCChhHHHHHHHHhhCC-CcEEEEccCC
Q 011414           25 LIVIGTGLPESVISAAASASG-KSVLHLDPNP   55 (486)
Q Consensus        25 ViIIGaGl~GL~aA~~La~~G-~~VlvlE~~~   55 (486)
                      |+|+|+|-.|++++..++..| .+|.+.+.++
T Consensus        32 VlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~   63 (176)
T d2jhfa2          32 CAVFGLGGVGLSVIMGCKAAGAARIIGVDINK   63 (176)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             EEEECCCCcHHHHHHHHHHcCCceEEeecCcH
Confidence            899999999999999999998 5899988865

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=80.40  E-value=0.38  Score=37.49  Aligned_cols=36  Identities=17%  Similarity=0.218  Sum_probs=26.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhh-CCCc-EEEEccCCC
Q 011414           21 TAFDLIVIGTGLPESVISAAASA-SGKS-VLHLDPNPF   56 (486)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~-~G~~-VlvlE~~~~   56 (486)
                      .+|.|+|+|||-.|...+.+|.+ .|++ |..+|-+..
T Consensus         2 ~~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~   39 (126)
T d2dt5a2           2 RKWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPE   39 (126)
T ss_dssp             SCEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTT
T ss_pred             CCceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchH
Confidence            46889999999999998887754 3666 455665543

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=80.22  E-value=1.2  Score=41.10  Aligned_cols=59  Identities=15%  Similarity=0.200  Sum_probs=35.9

Q ss_pred             cCCcchHHHHHHHHHHHcC-cEEEeCCceeEEEEecCCCeEEEEEeC--CC-----cEEEcCEEEEC
Q 011414          275 IYGQGELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRLA--SG-----QDILSHKLVLD  333 (486)
Q Consensus       275 ~gG~~~L~qal~r~~~~~G-g~i~l~~~V~~I~~~~~~g~~~gV~~~--~G-----~~i~A~~VI~~  333 (486)
                      .++......++...+...| .+|++++.|++|..++.....+.|+..  +|     ++++||.||+.
T Consensus       218 ~~~k~s~~~~~L~~a~~~g~~~i~t~~~V~~I~~~~~~~~~V~v~~~~~~~~~~~~~~~~A~~VILa  284 (370)
T d3coxa1         218 NAGKKSLDKTYLAQAAATGKLTITTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTADRVFFA  284 (370)
T ss_dssp             SSSBCCGGGTHHHHHHHTTCEEEECSEEEEEEEECSSSSEEEEEEEECTTSCEEEEEEEEEEEEEEC
T ss_pred             cccccChHHHHHHHHHhCCCcEEEecCcEEEEEEcCCCeEEEEEEEeCCccceeeEEEEECCEEEEe
Confidence            4444444444445555666 689999999999987322222333322  22     25889999864

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=80.08  E-value=0.77  Score=37.83  Aligned_cols=32  Identities=6%  Similarity=0.252  Sum_probs=28.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 011414           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (486)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (486)
                      ...|+|+|+|=++-+++++|++.| +|.|+-|+
T Consensus        18 ~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~   49 (177)
T d1nvta1          18 DKNIVIYGAGGAARAVAFELAKDN-NIIIANRT   49 (177)
T ss_dssp             SCEEEEECCSHHHHHHHHHHTSSS-EEEEECSS
T ss_pred             CCEEEEECCcHHHHHHHHHHcccc-ceeeehhh
Confidence            357999999999999999999888 89998774