Citrus Sinensis ID: 011416

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480------
Protein Sequence
MAEQGHVYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSDTVDFTSD
Secondary Structure (PSIPRED)
cccccccccHHHHHHHccccHHHHHHHHHHcHHHHHHcHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHcccccccccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHcHHEHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHHHHcccccccccccccccccccHcccccHcccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccHccccccHHHHHHHHHc
Coil and Loop (DISEMBL)
maeqghvytvdealthvgfgKYQCFVLAYAGLGWVAEAMEIMILSFVgptvksewnlssteeslITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGagllssfspnyiTLITLRCLVGVGLGSGHVFLSWFlefvppsnrgMWMVIFSSFWTIGSVSEAIGAWiimprldwrwllglssipSFILLAFlgfqpesprylclkgRTAEAHRALEKIAQVNktklpngklvarrstlptgerappELVHLLSsnggnkttegkSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELssldtrcrsplmfshhpqdanlYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAeiyptsvrstgagaanamgrigGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMlipfetkgqelsdtvdftsd
Flexible Loop (DISEMBL)
MAEQGHVYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIaqvnktklpngklvarrstlptgerappELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLipfetkgqelsdtvdftsd
Low Complexity Region (SEG)
MAEQGHVYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNlssteeslittsVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEgksglslflmlfssklARTTIllwlllFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQmtavvllvvvivtsilsvmlIPFETKGQELSDTVDFTSD
Disordered region (IsUnstruct)
*****HVYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQ*********************************************GLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFET**************
Disordered Region (DISOPRED)
******V***DEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARR********************************SLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQEL*********
Disordered Region (DISEMBL)
MAEQGHVYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQE**********
Disordered Region (DISPRO)
******VYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNK******************************************GLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSDTVD*T**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAEQGHVYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSDTVDFTSD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	486	2.2.26 [Sep-21-2011]
Q940M4	500	Organic cation/carnitine	yes	no	0.995	0.968	0.532	1e-135
P30638	520	Putative transporter ZK63	yes	no	0.927	0.867	0.321	6e-69
Q2XWK0	548	Synaptic vesicle 2-relate	N/A	no	0.905	0.802	0.339	5e-68
Q8N4V2	548	Synaptic vesicle 2-relate	yes	no	0.911	0.808	0.329	3e-67
Q5R5T8	548	Synaptic vesicle 2-relate	yes	no	0.915	0.812	0.327	4e-67
Q1JP63	548	Synaptic vesicle 2-relate	yes	no	0.915	0.812	0.327	7e-67
Q9Z2I7	548	Synaptic vesicle 2-relate	yes	no	0.915	0.812	0.323	5e-63
Q8BFT9	548	Synaptic vesicle 2-relate	yes	no	0.915	0.812	0.325	6e-63
Q1LVS8	506	Putative transporter SVOP	no	no	0.917	0.881	0.325	1e-60
Q8N434	492	Putative transporter SVOP	no	no	0.913	0.902	0.327	9e-60

>sp|Q940M4|OCT7_ARATH Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana GN=OCT7 PE=2 SV=1

 Score =  482 bits (1241), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 264/496 (53%), Positives = 348/496 (70%), Gaps = 12/496 (2%)

Query: 1   MAEQGHVYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSST 60
           MA+    +TVDEAL  +GFGK+Q +VLAYAG+GWVAEAME+M+LSFVGP V+S WNLS+ 
Sbjct: 1   MADGNTRFTVDEALVAMGFGKFQIYVLAYAGMGWVAEAMEMMLLSFVGPAVQSLWNLSAR 60

Query: 61  EESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLR 120
           +ESLIT+ VFAG+++GAY+WG+V+D +GRR GF+  A+VT  AG LS+FSPNY+ LI LR
Sbjct: 61  QESLITSVVFAGMLIGAYSWGIVSDKHGRRKGFIITAVVTFVAGFLSAFSPNYMWLIILR 120

Query: 121 CLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWL 180
           CLVG+GLG G V  SW+LEF+P  +RG WMV+FS+FWT+G++ EA  AW++MPRL WRWL
Sbjct: 121 CLVGLGLGGGPVLASWYLEFIPAPSRGTWMVVFSAFWTVGTIFEASLAWLVMPRLGWRWL 180

Query: 181 LGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNG-KLVARRS 239
           L  SS+PS +LL F  +  ESPRYL L+GR AEA   LEKIA++NKT+LP G       +
Sbjct: 181 LAFSSVPSSLLLLFYRWTSESPRYLILQGRKAEALAILEKIARMNKTQLPPGVLSSELET 240

Query: 240 TLPTGERAPPELVHLLSSNGGNK---------TTEGKSGLSLFLMLFSSKLARTTILLWL 290
            L   +  P E  HLL +    +           + + G SL L L S  L + T+LLW+
Sbjct: 241 ELEENKNIPTENTHLLKAGESGEAVAVSKIVLKADKEPGFSL-LALLSPTLMKRTLLLWV 299

Query: 291 LLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAA 350
           + FGN+FAYY VVLL +EL++   RC        +  D N Y D FI S AE PGLL++A
Sbjct: 300 VFFGNAFAYYGVVLLTTELNNSHNRCYPTEKQLRNSNDVN-YRDVFIASFAEFPGLLISA 358

Query: 351 ILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEI 410
            +VD  GRK S+  M    C+FLLPL+++QS  +TT LLFG R+C+  AFTV  IYA EI
Sbjct: 359 AMVDRLGRKASMASMLFTCCIFLLPLLSHQSPFITTVLLFGGRICISAAFTVVYIYAPEI 418

Query: 411 YPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPF 470
           YPT+VR+TG G  +++GRIGG++CPLVAV LV  CHQ  AV+L  VVI+ S + V L PF
Sbjct: 419 YPTAVRTTGVGVGSSVGRIGGILCPLVAVGLVHGCHQTIAVLLFEVVILVSGICVCLFPF 478

Query: 471 ETKGQELSDTVDFTSD 486
           ET G++L+D++  + +
Sbjct: 479 ETSGRDLTDSISASKE 494

High affinity carnitine transporter involved in the active cellular uptake of carnitine. Also transports organic cations.
Arabidopsis thaliana (taxid: 3702)

>sp|P30638|YOU1_CAEEL Putative transporter ZK637.1 OS=Caenorhabditis elegans GN=ZK637.1 PE=3 SV=5

 Score =  261 bits (668), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 156/485 (32%), Positives = 255/485 (52%), Gaps = 34/485 (7%)

Query: 3   EQGHVYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEE 62
           +    +TVDEA+  +GFG++Q  +    G+ W+A+AME+M+LS + P +  EW +SS ++
Sbjct: 62  DSEKTFTVDEAVEALGFGRFQLKLSILTGMAWMADAMEMMLLSLISPALACEWGISSVQQ 121

Query: 63  SLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCL 122
           +L+TT VF+G+++ +  WG + D +GRR G     LV    G++S  SP++  L+  R L
Sbjct: 122 ALVTTCVFSGMMLSSTFWGKICDRFGRRKGLTFSTLVACIMGVISGMSPHFYVLLFFRGL 181

Query: 123 VGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLG 182
            G G+G     ++ + EF+P + R   +V+  SFW IG+V EA+ A+ +M    WR L+ 
Sbjct: 182 TGFGIGGVPQSVTLYAEFLPTAQRAKCVVLIESFWAIGAVFEALLAYFVMESFGWRALMF 241

Query: 183 LSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLP 242
           LSS+P  I      + PES R+    G    A   L+  A++N+ +LP G+LV   S+  
Sbjct: 242 LSSLPLGIFAVASFWLPESARFDMASGHPERALETLQAAARMNRVQLPTGRLV---SSTK 298

Query: 243 TGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAV 302
            G  +  ++ +LLS +                      L +TTILLW +    +F+YY +
Sbjct: 299 AGSESRGDIANLLSPD----------------------LRKTTILLWCIWAITAFSYYGM 336

Query: 303 VLLISELSSLDTRCRSPLMFSH-------HPQDANLYIDEFITSLAEIPGLLLAAILVDT 355
           VL  + L      C   L FS+        P   + Y D   T+LAE PGL++  ++++ 
Sbjct: 337 VLFTTVLFQSHDECHGGL-FSNGTQMEVCQPLTRSDYFDLLSTTLAEFPGLIITVLIIEW 395

Query: 356 AGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV 415
            GRK ++ + + +  +F   L         T L+F AR  + GAF  + +Y  E+YPT++
Sbjct: 396 FGRKKTMALEYAVFAIFTFLLYFCLDRFTVTVLIFVARAFISGAFQCAYVYTPEVYPTTL 455

Query: 416 RSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQ 475
           R+ G G  +AM RIG +V P +A         +   +     I+  I S+ L P ETKG+
Sbjct: 456 RAVGLGTCSAMARIGAIVTPFIAQVASEKSLSLPIGIYGTAAILGLIASLSL-PIETKGR 514

Query: 476 ELSDT 480
           ++ D+
Sbjct: 515 QMMDS 519

Caenorhabditis elegans (taxid: 6239)

>sp|Q2XWK0|SVOP_XENLA Synaptic vesicle 2-related protein OS=Xenopus laevis GN=svop PE=2 SV=1

 Score =  258 bits (660), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 165/486 (33%), Positives = 255/486 (52%), Gaps = 46/486 (9%)

Query: 8   YTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITT 67
           + V++A+  +GFGK+Q  +    GL W+A+AME+MILS + P +  EW L S + +L+T+
Sbjct: 68  FMVEDAVEAIGFGKFQWKLSMLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTS 127

Query: 68  SVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGL 127
            VF G++  +  WG V+D YGRR G     + T   G+LS+F+P Y  ++ LR LVG G+
Sbjct: 128 VVFIGMMASSSLWGNVSDQYGRRTGLKISVIWTLYYGILSAFAPVYSWILVLRGLVGFGI 187

Query: 128 GSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIP 187
           G     ++ + EF+P  +R   +++   FW +G+V E + A  +MP L WRWLL LS++P
Sbjct: 188 GGVPQSVTLYAEFLPMKSRAKCILLIEIFWALGTVFEVLLAIFVMPTLGWRWLLILSALP 247

Query: 188 SFILLAFLGFQ-PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGER 246
             +L A L F  PES RY  L G   +A   L++IA  N   +P GKL+  R        
Sbjct: 248 -LMLFAILCFWLPESARYEVLSGNQEKALATLKRIATENGAPMPLGKLIVSR-------- 298

Query: 247 APPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLI 306
                          +   GK        LFS +   TT+LLW + F N+F+YY +VLL 
Sbjct: 299 ---------------QEDRGK-----IRDLFSPQFRCTTLLLWFIWFSNAFSYYGLVLLT 338

Query: 307 SELSSLDTRC---------RSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAG 357
           +EL      C         +     +        Y D   T+L+E PGLL+   ++D  G
Sbjct: 339 TELFQAGDVCSISNQRKAVKPKCSLACEYLTVEDYTDLLWTTLSEFPGLLVTLWIIDRVG 398

Query: 358 RKLSITI---MFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTS 414
           RK ++ I   +F+ S L L   V    N+LT   LF AR  + G F  + +Y  E+YPT+
Sbjct: 399 RKKTMAICFIIFSFSALLLFLCVG--RNVLTV-FLFIARAFISGGFQAAYVYTPEVYPTA 455

Query: 415 VRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKG 474
            R+ G G  + M R+G ++ P +A  ++ +   +T +V     ++ ++ S  L P ETKG
Sbjct: 456 TRALGLGTCSGMARVGALITPFIAQVMLESSIYLTVLVYSGCCVLAAVASCFL-PIETKG 514

Query: 475 QELSDT 480
           + L ++
Sbjct: 515 RGLQES 520

Xenopus laevis (taxid: 8355)

>sp|Q8N4V2|SVOP_HUMAN Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1

 Score =  256 bits (653), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 159/483 (32%), Positives = 251/483 (51%), Gaps = 40/483 (8%)

Query: 8   YTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITT 67
           + V++A+  +GFGK+Q  +    GL W+A+AME+MILS + P +  EW L S + +L+T+
Sbjct: 68  FMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTS 127

Query: 68  SVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGL 127
            VF G++  +  WG ++D YGR+ G     L T   G+LS+F+P Y  ++ LR LVG G+
Sbjct: 128 VVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGI 187

Query: 128 GSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIP 187
           G     ++ + EF+P   R   +++   FW IG+V E + A  +MP L WRWLL LS++P
Sbjct: 188 GGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLILSAVP 247

Query: 188 SFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERA 247
             +      + PES RY  L G   +A   L++IA  N   +P GKL+  R         
Sbjct: 248 LLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISR--------- 298

Query: 248 PPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLIS 307
                         +   GK        LF+     TT+LLW + F N+F+YY +VLL +
Sbjct: 299 --------------QEDRGK-----MRDLFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTT 339

Query: 308 EL---------SSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGR 358
           EL         SS      +    +        Y+D   T+L+E PG+L+   ++D  GR
Sbjct: 340 ELFQAGDVCGISSRKKAVEAKCSLACEYLSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGR 399

Query: 359 KLSITIMFTL-SCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRS 417
           K ++ + F + S   LL  +    N+LT  LLF AR  + G F  + +Y  E+YPT+ R+
Sbjct: 400 KKTMALCFVIFSFCSLLLFICVGRNVLTL-LLFIARAFISGGFQAAYVYTPEVYPTATRA 458

Query: 418 TGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQEL 477
            G G  + M R+G ++ P +A  ++ +   +T  V     ++ ++ S  L P ETKG+ L
Sbjct: 459 LGLGTCSGMARVGALITPFIAQVMLESSVYLTLAVYSGCCLLAALASCFL-PIETKGRGL 517

Query: 478 SDT 480
            ++
Sbjct: 518 QES 520

Homo sapiens (taxid: 9606)

>sp|Q5R5T8|SVOP_PONAB Synaptic vesicle 2-related protein OS=Pongo abelii GN=SVOP PE=2 SV=1

 Score =  256 bits (653), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 159/485 (32%), Positives = 251/485 (51%), Gaps = 40/485 (8%)

Query: 6   HVYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLI 65
             + V++A+  +GFGK+Q  +    GL W+A+AME+MILS + P +  EW L S + +L+
Sbjct: 66  DTFMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALL 125

Query: 66  TTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGV 125
           T+ VF G++  +  WG ++D YGR+ G     L T   G+LS+F+P Y  ++ LR LVG 
Sbjct: 126 TSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGF 185

Query: 126 GLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSS 185
           G+G     ++ + EF+P   R   +++   FW IG+V E + A  +MP L WRWLL LS+
Sbjct: 186 GIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLILSA 245

Query: 186 IPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGE 245
           +P  +      + PES RY  L G   +A   L++IA  N   +P GKL+  R       
Sbjct: 246 VPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISR------- 298

Query: 246 RAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLL 305
                           +   GK        LF+     TT+LLW + F N+F+YY +VLL
Sbjct: 299 ----------------QEDRGK-----MRDLFTPHFRWTTLLLWFIWFSNAFSYYGLVLL 337

Query: 306 ISEL---------SSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTA 356
            +EL         SS      +    +        Y+D   T+L+E PG+L+   ++D  
Sbjct: 338 TTELFQAGDVCGISSRKKAVEAKCSLACEYLSEEDYMDLLWTTLSEFPGVLVTLWIIDRL 397

Query: 357 GRKLSITIMFTL-SCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV 415
           GRK ++ + F + S   LL  +    N+LT  LLF AR  + G F  + +Y  E+YPT+ 
Sbjct: 398 GRKKTMALCFVIFSFCSLLLFICVGRNVLTL-LLFIARAFISGGFQAAYVYTPEVYPTAT 456

Query: 416 RSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQ 475
           R+ G G  + M R+G ++ P +A  ++ +   +T  V     ++ ++ S  L P ETKG+
Sbjct: 457 RALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAVYSGCCLLAALASCFL-PIETKGR 515

Query: 476 ELSDT 480
            L ++
Sbjct: 516 GLQES 520

Pongo abelii (taxid: 9601)

>sp|Q1JP63|SVOP_BOVIN Synaptic vesicle 2-related protein OS=Bos taurus GN=SVOP PE=2 SV=1

 Score =  255 bits (651), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 159/485 (32%), Positives = 251/485 (51%), Gaps = 40/485 (8%)

Query: 6   HVYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLI 65
             + V++A+  +GFGK+Q  +    GL W+A+AME+MILS + P +  EW L S + +L+
Sbjct: 66  DTFMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALL 125

Query: 66  TTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGV 125
           T+ VF G++  +  WG ++D YGR+ G     L T   G+LS+F+P Y  ++ LR LVG 
Sbjct: 126 TSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGF 185

Query: 126 GLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSS 185
           G+G     ++ + EF+P   R   +++   FW IG+V E + A  +MP L WRWLL LS+
Sbjct: 186 GIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLILSA 245

Query: 186 IPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGE 245
           +P  +      + PES RY  L G   +A   L++IA  N   +P GKL+  R       
Sbjct: 246 VPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISR------- 298

Query: 246 RAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLL 305
                           +   GK        LF+     TT+LLW + F N+F+YY +VLL
Sbjct: 299 ----------------QEDRGK-----MRDLFTPHFRWTTLLLWFIWFSNAFSYYGLVLL 337

Query: 306 ISEL---------SSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTA 356
            +EL         SS      +    +        Y+D   T+L+E PG+L+   ++D  
Sbjct: 338 TTELFQAGDVCSISSRKKAVEAKCSLACEYLSEEDYMDLLWTTLSEFPGVLVTLWIIDRL 397

Query: 357 GRKLSITIMFTL-SCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV 415
           GRK ++ + F + S   LL  +    N+LT  LLF AR  + G F  + +Y  E+YPT+ 
Sbjct: 398 GRKKTMALCFVVFSFCSLLLFICVGRNMLTL-LLFIARAFISGGFQAAYVYTPEVYPTAT 456

Query: 416 RSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQ 475
           R+ G G  + M R+G ++ P +A  ++ +   +T  V     ++ ++ S  L P ETKG+
Sbjct: 457 RALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAVYSGCCLLAALASCFL-PIETKGR 515

Query: 476 ELSDT 480
            L ++
Sbjct: 516 GLQES 520

Bos taurus (taxid: 9913)

>sp|Q9Z2I7|SVOP_RAT Synaptic vesicle 2-related protein OS=Rattus norvegicus GN=Svop PE=1 SV=1

 Score =  242 bits (618), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 157/485 (32%), Positives = 249/485 (51%), Gaps = 40/485 (8%)

Query: 6   HVYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLI 65
             + V++A+  +GFG++Q  +    GL W+A+AME+MILS + P +  EW L S + +L+
Sbjct: 66  DTFMVEDAVEAIGFGRFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALL 125

Query: 66  TTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGV 125
           T+ VF G++  +  WG ++D YGR+ G       T   G+LS+F+P Y  ++ LR LVG 
Sbjct: 126 TSVVFIGMMSSSTLWGNISDQYGRKTGLKISVFWTLYYGILSAFAPVYSWILVLRGLVGF 185

Query: 126 GLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSS 185
           G+G     ++ + EF+P   R   +++   FW IG+V E + A  +MP L WRWLL LS+
Sbjct: 186 GIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVLLAVFVMPSLGWRWLLLLSA 245

Query: 186 IPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGE 245
            P  +      + PES RY  L G   +A   L++IA  N   +P GKL+  R       
Sbjct: 246 APLLVFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISR------- 298

Query: 246 RAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLL 305
                           +   GK        LF+     TT+LLW + F N+F+YY +VLL
Sbjct: 299 ----------------QEDRGK-----MRDLFTPHFRWTTLLLWFIWFSNAFSYYGLVLL 337

Query: 306 ISEL---------SSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTA 356
            +EL         SS      +    +        Y+D   T+L+E PG+L+   ++D  
Sbjct: 338 TTELFQAGDVCSISSRKKAVEAKCSLACEYLSKEDYMDLLWTTLSEFPGVLVTLWVIDRL 397

Query: 357 GRKLSITIMFTL-SCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV 415
           GRK ++ + F + S   LL  +    N+LT  LLF AR  + G F  + +Y  E+YPT+ 
Sbjct: 398 GRKKTMALCFVIFSLCSLLLFICIGRNVLTL-LLFIARAFISGGFQAAYVYTPEVYPTAT 456

Query: 416 RSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQ 475
           R+ G G  + M R+G ++ P +A  ++ +   +T  V     ++ ++ S  L P ETKG+
Sbjct: 457 RALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAVYSGCCLLAALASCFL-PIETKGR 515

Query: 476 ELSDT 480
            L ++
Sbjct: 516 ALQES 520

Rattus norvegicus (taxid: 10116)

>sp|Q8BFT9|SVOP_MOUSE Synaptic vesicle 2-related protein OS=Mus musculus GN=Svop PE=1 SV=1

 Score =  241 bits (616), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 158/485 (32%), Positives = 249/485 (51%), Gaps = 40/485 (8%)

Query: 6   HVYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLI 65
             + V++A+  +GFG++Q  +    GL W+A+AME+MILS + P +  EW L S + +L+
Sbjct: 66  DTFMVEDAVEAIGFGRFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALL 125

Query: 66  TTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGV 125
           T+ VF G++  +  WG ++D YGR+ G     L T   G+LS+F+P Y  ++ LR LVG 
Sbjct: 126 TSVVFIGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGF 185

Query: 126 GLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSS 185
           G+G     ++ + EF+P   R   +++   FW IG+V E + A  +MP L WRWLL LS+
Sbjct: 186 GIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVLLAVFVMPSLGWRWLLLLSA 245

Query: 186 IPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGE 245
            P  +      + PES RY  L G   +A   L++IA  N   +P GKL+  R       
Sbjct: 246 APLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISR------- 298

Query: 246 RAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLL 305
                           +   GK        LF+     TT+LLW + F N+F+YY +VLL
Sbjct: 299 ----------------QEDRGK-----MRDLFTPHFRWTTLLLWFIWFSNAFSYYGLVLL 337

Query: 306 ISEL---------SSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTA 356
            +EL         SS      +    +        Y+D   T+L+E PG+L+   ++D  
Sbjct: 338 TTELFQAGDVCSISSRKKAVEAKCSLACEYLSKEDYMDLLWTTLSEFPGVLVTLWVIDRL 397

Query: 357 GRKLSITIMFTL-SCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV 415
           GRK ++ + F + S   LL  +    N+LT  LLF AR  + G F  + +Y  E+YPT+ 
Sbjct: 398 GRKKTMALCFIIFSLCSLLLFICIGRNVLTL-LLFIARAFISGGFQAAYVYTPEVYPTAT 456

Query: 416 RSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQ 475
           R+ G G  + M R+G ++ P +A  ++ +   +T  V     ++  + S  L P ETKG+
Sbjct: 457 RALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAVYSGCCLLAGVASCFL-PIETKGR 515

Query: 476 ELSDT 480
            L ++
Sbjct: 516 ALQES 520

Mus musculus (taxid: 10090)

>sp|Q1LVS8|SVOPL_DANRE Putative transporter SVOPL OS=Danio rerio GN=svopl PE=2 SV=1

 Score =  234 bits (597), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 159/488 (32%), Positives = 236/488 (48%), Gaps = 42/488 (8%)

Query: 3   EQGHVYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEE 62
           ++   YTV+EA+  +GFG +   +    G   + EAMEIM+L+ V P ++ EW+L   + 
Sbjct: 44  KEPKCYTVEEAVESIGFGCFHILLFVIMGSANIVEAMEIMLLAVVSPEIRCEWHLEDWQV 103

Query: 63  SLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCL 122
           +L++T VF G +V     G +AD YGR     G  +  +    L+SFS +Y   I LRC+
Sbjct: 104 ALVSTMVFFGFMVCGVLCGYIADKYGRWKVVFGGFVWASYFSFLTSFSTSYGWFIFLRCM 163

Query: 123 VGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLG 182
           VG G+ +         EF+P   R   + + S FW +GS+   +    ++P + WRW++ 
Sbjct: 164 VGCGVAATSQGFVLKTEFIPAKYRAYLLPLASIFWMMGSILIIVLGMTVVPTMGWRWMIR 223

Query: 183 LSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLP 242
            S IPS +L+    F PES R+    G    A   L++IA++N     NG        LP
Sbjct: 224 FSVIPSLVLIGLFMFIPESARFQVSAGNIQGAMSTLKRIAKMN-----NG-------VLP 271

Query: 243 TGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAV 302
            GE   PE+     +  GN  T           L SS   RT++LLW   F  SF+YY  
Sbjct: 272 EGELREPEV-----TERGNAVT-----------LISSAFRRTSLLLWYSWFVASFSYYGS 315

Query: 303 VLLISELSSLDTRCRSPLMFSHH-------------PQDANLYIDEFITSLAEIPGLLLA 349
           VL  SEL   +  C +     H              P +++ Y    I+ L E+  + L 
Sbjct: 316 VLSSSELLEKNLLCVTDPDLEHQIKHIQEETLCYCIPFNSDDYQTLLISCLGEVALIPLN 375

Query: 350 AILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAE 409
            IL++  GRK S+ I+  LS  F + +    + +  T LLF  R  V   F V  IY AE
Sbjct: 376 IILLNIVGRKYSMVILLLLSAFFFMLVNICTTMLGFTILLFLLRSVVSMNFNVVYIYTAE 435

Query: 410 IYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIP 469
           +YPTSVRS G G   +  RIGGM+ P +A  L++    +         I+ +I  V  +P
Sbjct: 436 VYPTSVRSIGMGFCTSFSRIGGMIAPFIAQVLMSKSVILALSPFATACIICAI-GVFFLP 494

Query: 470 FETKGQEL 477
            ET+G+ L
Sbjct: 495 IETRGRAL 502

Danio rerio (taxid: 7955)

>sp|Q8N434|SVOPL_HUMAN Putative transporter SVOPL OS=Homo sapiens GN=SVOPL PE=2 SV=2

 Score =  231 bits (589), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 163/497 (32%), Positives = 249/497 (50%), Gaps = 53/497 (10%)

Query: 3   EQGHVYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEE 62
           ++   +TV++A+  +GFG++   +    G   V EAMEIM+++ V P ++ EW L + + 
Sbjct: 27  KEPKTFTVEDAVETIGFGRFHIALFLIMGSTGVVEAMEIMLIAVVSPVIRCEWQLENWQV 86

Query: 63  SLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCL 122
           +L+TT VF G +V +  +GL+AD YGR    L   L  A   LL+SF+P+YI  + LR +
Sbjct: 87  ALVTTMVFFGYMVFSILFGLLADRYGRWKILLISFLWGAYFSLLTSFAPSYIWFVFLRTM 146

Query: 123 VGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLG 182
           VG G+      L    EF+P   RG  + +   FW  GS+     A +I+P + WRWL+ 
Sbjct: 147 VGCGVSGHSQGLIIKTEFLPTKYRGYMLPLSQVFWLAGSLLIIGLASVIIPTIGWRWLIR 206

Query: 183 LSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLP 242
           ++SIP  IL+    F PES R+    G T  A   LE++A++N++ +P GKLV      P
Sbjct: 207 VASIPGIILIVAFKFIPESARFNVSTGNTRAALATLERVAKMNRSVMPEGKLVE-----P 261

Query: 243 TGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAV 302
             E+                   G+     F  L  +K  RTT+ +W++  G SFAYY V
Sbjct: 262 VLEK------------------RGR-----FADLLDAKYLRTTLQIWVIWLGISFAYYGV 298

Query: 303 VLLISELSSLDTRC------------------RSPLMFSHH--PQDANLYIDEFITSLAE 342
           +L  +EL   D  C                  +SP  + H   P D   Y    I+++ E
Sbjct: 299 ILASAELLERDLVCGSKSDSAVVVTGGDSGESQSPC-YCHMFAPSD---YRTMIISTIGE 354

Query: 343 IPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTV 402
           I    L  + ++  GR+LS++I    + LF L L    S+    G LF  R  V   F  
Sbjct: 355 IALNPLNILGINFLGRRLSLSITMGCTALFFLLLNICTSSAGLIGFLFMLRALVAANFNT 414

Query: 403 SLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSI 462
             IY AE+YPT++R+ G G + ++ RIG MV P ++  L+ +   + A+ L   V V   
Sbjct: 415 VYIYTAEVYPTTMRALGMGTSGSLCRIGAMVAPFISQVLM-SASILGALCLFSSVCVVCA 473

Query: 463 LSVMLIPFETKGQELSD 479
           +S   +P ETKG+ L  
Sbjct: 474 ISAFTLPIETKGRALQQ 490

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	486
383932368	482	MFS [Gossypium hirsutum]	0.975	0.983	0.632	1e-164
255574249	497	sugar transporter, putative [Ricinus com	0.979	0.957	0.605	1e-160
224118680	492	predicted protein [Populus trichocarpa]	0.983	0.971	0.628	1e-159
255573803	498	sugar transporter, putative [Ricinus com	0.973	0.949	0.594	1e-153
224118546	493	predicted protein [Populus trichocarpa]	0.997	0.983	0.574	1e-153
224095094	485	predicted protein [Populus trichocarpa]	0.975	0.977	0.559	1e-148
224095100	463	predicted protein [Populus trichocarpa]	0.952	1.0	0.539	1e-147
90265074	489	H0702G05.6 [Oryza sativa Indica Group]	0.979	0.973	0.540	1e-146
225443470	495	PREDICTED: synaptic vesicle 2-related pr	0.987	0.969	0.576	1e-144
242039569	491	hypothetical protein SORBIDRAFT_01g02099	0.965	0.955	0.528	1e-144

>gi|383932368|gb|AFH57281.1| MFS [Gossypium hirsutum]

 Score =  583 bits (1503), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 300/474 (63%), Positives = 364/474 (76%)

Query: 7   VYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLIT 66
           +YT+DEAL  VGFGK+Q FVL YAGLGW AEAMEIMILSF+G  VKSEW LSS +ESL++
Sbjct: 8   LYTLDEALETVGFGKFQGFVLGYAGLGWFAEAMEIMILSFIGQAVKSEWQLSSGQESLLS 67

Query: 67  TSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVG 126
           T VFAG+++GA  WGL++DNYGRR GFL  ++VT GAGLLS+FSPNY+TL  LR LVG G
Sbjct: 68  TVVFAGMLLGANTWGLLSDNYGRRKGFLTISMVTFGAGLLSTFSPNYLTLALLRGLVGFG 127

Query: 127 LGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSI 186
           LG   VFLSWFLEF+P SNRGMWMV+FS+FWT GS+ EA  AWI+MPRL+WRW+L  S++
Sbjct: 128 LGGSSVFLSWFLEFIPASNRGMWMVVFSTFWTFGSIFEATLAWIVMPRLNWRWVLAFSAV 187

Query: 187 PSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGER 246
           PSF LL   G  PESPRYLC+KG T++A R LEKIA VN+TKLP G LV+ RS     E 
Sbjct: 188 PSFALLILYGVAPESPRYLCMKGNTSDALRILEKIASVNQTKLPPGVLVSGRSNDKDEES 247

Query: 247 APPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLI 306
           AP E    L  +    TT+ KSG S F MLFSSKL RTT+LLW+L FG+SF+YY ++LL 
Sbjct: 248 APSENTAPLLPSLSKSTTQSKSGFSSFFMLFSSKLIRTTLLLWVLFFGDSFSYYGIILLT 307

Query: 307 SELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMF 366
           S+LSS  + C   L  + +PQD  LY++ FITS+AE+PGLLL+AILVD  GRK S+ IMF
Sbjct: 308 SKLSSGQSTCFPSLQSNINPQDDGLYLNAFITSMAELPGLLLSAILVDRVGRKHSMAIMF 367

Query: 367 TLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAM 426
            L+ +FL PL+  Q  +LTT LLFGARM  MG FTV+ IY+ E+YPTSVR+TGAG A+A+
Sbjct: 368 GLAFIFLTPLLIQQPAVLTTCLLFGARMNAMGTFTVASIYSPELYPTSVRTTGAGVASAI 427

Query: 427 GRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSDT 480
           GRIGGMVCPLVAV LV  CHQ  AV L +V IV SI+ + L P++TKG+ELSDT
Sbjct: 428 GRIGGMVCPLVAVGLVNECHQTAAVALFLVAIVVSIVCIQLFPYDTKGRELSDT 481

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574249|ref|XP_002528039.1| sugar transporter, putative [Ricinus communis] gi|223532569|gb|EEF34357.1| sugar transporter, putative [Ricinus communis]

 Score =  572 bits (1473), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 288/476 (60%), Positives = 366/476 (76%)

Query: 4   QGHVYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEES 63
           Q  VY +DEAL  VGFGK+Q FVL YAGLGW +EAME+MILSFVGP VK +W LSST+ES
Sbjct: 8   QNLVYNLDEALAAVGFGKFQGFVLVYAGLGWFSEAMEVMILSFVGPAVKLKWELSSTQES 67

Query: 64  LITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLV 123
           L++T VF G+++GA  WGL++DNYGRR   L   ++T+GAG +S+FSPNY+TL+ LRCLV
Sbjct: 68  LLSTVVFGGMLIGACTWGLISDNYGRRKCVLSITVITSGAGFISAFSPNYLTLVVLRCLV 127

Query: 124 GVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGL 183
           G GLG  HVFLSWFLEF+P S+RG WMVIFS+FWT+G + EA  AWI+M RL+WRWLL L
Sbjct: 128 GFGLGGTHVFLSWFLEFIPTSHRGKWMVIFSTFWTLGIIFEASLAWIVMLRLNWRWLLAL 187

Query: 184 SSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPT 243
           S++PSF LL F G  PESPRYLCLKGRTA+AH+ LEKIA VN+ +LP G LV+       
Sbjct: 188 STVPSFSLLLFYGLVPESPRYLCLKGRTAQAHQVLEKIALVNQKELPPGMLVSYGKIKED 247

Query: 244 GERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVV 303
            E +  E    L      K +  KSG S F +LFSS L +TT+LLW+L FGN F+YY ++
Sbjct: 248 EEISALEQKRSLLFMDREKISTLKSGFSSFSLLFSSNLIQTTLLLWVLFFGNVFSYYGII 307

Query: 304 LLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSIT 363
           LL S+LSS +++C   ++ S +PQD +L++D  ITS AE+PG+LL+A++VD  GRKLS+ 
Sbjct: 308 LLTSQLSSSESKCSLTILHSQNPQDESLFMDVLITSFAELPGILLSAMMVDRFGRKLSMA 367

Query: 364 IMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAA 423
           IMF  + +FLLPLV+ QS+ILTTGLLFGARM  +G FTV+ IYA E+YPTS+RSTGAG A
Sbjct: 368 IMFIFAWIFLLPLVSRQSDILTTGLLFGARMFSLGTFTVASIYAPELYPTSIRSTGAGTA 427

Query: 424 NAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSD 479
           +A+GRIGGMVCPLVAVALV+NCH   A++L  VVI  +++ ++L PFET G+ELSD
Sbjct: 428 SAVGRIGGMVCPLVAVALVSNCHFKAAIILFEVVIAITVVCILLFPFETSGRELSD 483

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118680|ref|XP_002331421.1| predicted protein [Populus trichocarpa] gi|222873635|gb|EEF10766.1| predicted protein [Populus trichocarpa]

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 301/479 (62%), Positives = 373/479 (77%), Gaps = 1/479 (0%)

Query: 3   EQGHVYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEE 62
           E   VYT+D+AL   GFGK+Q  VLAYAGLGW AEAMEI+ILSFVGP VKS+WNLSST+E
Sbjct: 4   EDQLVYTLDDALASAGFGKFQFLVLAYAGLGWFAEAMEILILSFVGPAVKSQWNLSSTQE 63

Query: 63  SLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCL 122
           SL++T VFAG++VGAY+WGL +D  GRR GFLG  ++T+ AG LS+FSPNY++L+ LRCL
Sbjct: 64  SLLSTVVFAGMLVGAYSWGLFSDYCGRRQGFLGITIITSAAGFLSTFSPNYVSLLILRCL 123

Query: 123 VGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLG 182
           VGVGLG G VF SWFLEFVP S+RG WMV+FS+FWT G++ EA  AWI++PRL+WRWLL 
Sbjct: 124 VGVGLGGGPVFSSWFLEFVPASHRGTWMVVFSTFWTFGTIFEAALAWIVLPRLNWRWLLA 183

Query: 183 LSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLP 242
            SS+PS   L F    PESPRYL +KGR  EAH  LEKIAQ+N++KLP G LV+  +   
Sbjct: 184 FSSLPSIAQLFFYWIVPESPRYLSMKGRITEAHNILEKIAQLNQSKLPPGMLVSDSTIGL 243

Query: 243 TGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAV 302
             E AP +   LLSS   N  ++ KSG S F+MLFSSKL RTT+LLWLL FGN+F+YY +
Sbjct: 244 DEESAPSKYTPLLSST-RNLVSDFKSGFSSFVMLFSSKLIRTTLLLWLLFFGNAFSYYGI 302

Query: 303 VLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSI 362
           +LL SELSS + +C S ++ S + QD +LYI+ FITSLAE+PG+LL+AI+VD  GRKLS+
Sbjct: 303 ILLTSELSSEEGKCASTVLRSENLQDDSLYINVFITSLAELPGILLSAIIVDRFGRKLSM 362

Query: 363 TIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGA 422
             MF L+C+FLLPLV +Q   LTT LLFGARMC +G FTV+ IYA E+YPT +R+TGAG 
Sbjct: 363 AFMFVLACIFLLPLVFHQHATLTTALLFGARMCAIGTFTVAAIYAPEVYPTVIRATGAGV 422

Query: 423 ANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSDTV 481
           ANA+GRIGGMVCPLVAV LVA CH   A++L  VVIV S++ V+L PFET G+ELSD++
Sbjct: 423 ANAVGRIGGMVCPLVAVGLVAGCHLKEAIILFEVVIVISVVCVLLFPFETSGRELSDSL 481

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573803|ref|XP_002527821.1| sugar transporter, putative [Ricinus communis] gi|223532795|gb|EEF34573.1| sugar transporter, putative [Ricinus communis]

 Score =  548 bits (1411), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 282/474 (59%), Positives = 348/474 (73%), Gaps = 1/474 (0%)

Query: 8   YTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITT 67
           YT+DEAL  VGFGK+Q  VL YAGLG  AEAME+MILSFVGP VKSEW LSS++ESL+T+
Sbjct: 14  YTLDEALAAVGFGKFQGLVLVYAGLGSFAEAMEMMILSFVGPAVKSEWGLSSSQESLLTS 73

Query: 68  SVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGL 127
            VFAG++ GAY+WGL++DNYGRR G LG  L+T GAG LS+F PNYI+LITLRCLVG+GL
Sbjct: 74  VVFAGMLFGAYSWGLISDNYGRRKGILGSTLLTCGAGSLSTFCPNYISLITLRCLVGIGL 133

Query: 128 GSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIP 187
           G G VF SWFLEFVP S+RG WMV++S+ WT G++ EA  AWI+MPRL WRWLL  SS+P
Sbjct: 134 GGGPVFSSWFLEFVPASHRGTWMVVYSTSWTFGTIFEATLAWIVMPRLSWRWLLAFSSLP 193

Query: 188 SFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERA 247
           S +LL F    PESPRYLC KGR  +AHR LEKIA +N+ KLP G LV+  +T    E +
Sbjct: 194 SIVLLLFYRLAPESPRYLCTKGRFTDAHRILEKIALLNQAKLPGGILVSDSTTGLDEESS 253

Query: 248 PPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLIS 307
                 LLS     + +  KS  S F MLFSS+L +TT+LLW+L FGNSF YY ++LL S
Sbjct: 254 SLSHQPLLSL-ARKRVSSFKSAFSSFFMLFSSRLIKTTLLLWVLYFGNSFLYYGIILLTS 312

Query: 308 ELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFT 367
           ELS     CRS      + QD NLYID FITSLAE+PG++L+AI VD  GRK S+  MF 
Sbjct: 313 ELSGRQDECRSATSSLENHQDENLYIDIFITSLAELPGIILSAITVDRFGRKRSMIFMFV 372

Query: 368 LSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMG 427
            +C+FLLPLV++QS +L T  LFGARMC +G FT++ IY  E+YPT VR+TG+G A+A G
Sbjct: 373 AACIFLLPLVSHQSAVLRTSFLFGARMCAIGTFTIACIYCPELYPTPVRTTGSGVASAAG 432

Query: 428 RIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSDTV 481
           RIGGM+CPLVAV LV  CH    +++  VV   S + ++  P+ETKG ELSD+V
Sbjct: 433 RIGGMICPLVAVGLVTGCHVEAGIIVFEVVAAISAICLLFFPYETKGCELSDSV 486

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118546|ref|XP_002331389.1| predicted protein [Populus trichocarpa] gi|222873603|gb|EEF10734.1| predicted protein [Populus trichocarpa]

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 279/486 (57%), Positives = 360/486 (74%), Gaps = 1/486 (0%)

Query: 1   MAEQGHVYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSST 60
           M ++   YT+DEAL  +GFGK+Q  VLAYAGLGW AEAME+M+LSFVGPTVKS+W LSS 
Sbjct: 1   MDDEAPAYTLDEALACLGFGKFQGLVLAYAGLGWFAEAMELMLLSFVGPTVKSQWGLSSG 60

Query: 61  EESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLR 120
           +ESL++T VFAG++VGAY+WGLV+DN GRR            +GLLS+FSPNY +L+ +R
Sbjct: 61  QESLLSTVVFAGMLVGAYSWGLVSDNCGRRQAIHFSLPYIFQSGLLSAFSPNYESLVIIR 120

Query: 121 CLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWL 180
           CLVG+GLG   V  SWFLEFVP  +RG WMV+FS+FWT+G++ EA  AW++M RL WRWL
Sbjct: 121 CLVGLGLGGSTVLCSWFLEFVPAPHRGKWMVVFSTFWTLGAIFEASLAWLVMQRLSWRWL 180

Query: 181 LGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRST 240
           L  SS+PS  LL F G  PESPRYLC+KGR  +AH+ L+KIA +N+++LP G LV   + 
Sbjct: 181 LAFSSLPSIALLLFYGIVPESPRYLCMKGRINDAHKILQKIALLNQSELPPGMLVPDSTV 240

Query: 241 LPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYY 300
               + AP +   LLSS       + KS  S F MLFSS L +TT+LLW+LLFGN F+YY
Sbjct: 241 GQEEKSAPSKYTPLLSSTR-KVIVDFKSVFSSFFMLFSSTLIQTTLLLWVLLFGNVFSYY 299

Query: 301 AVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKL 360
            ++LL SELSS   +C S ++ S + Q+ +LYI+ F+TSLAE+PGLLL+AI+VD  GRKL
Sbjct: 300 GIILLTSELSSQQGKCGSTILSSENLQNDSLYINVFVTSLAELPGLLLSAIIVDRLGRKL 359

Query: 361 SITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGA 420
           S+ +M  L C+FL PL+   S  LTT +LFGARMCVMG+FT++ +YA E+YPT+VR+TGA
Sbjct: 360 SMALMLVLGCIFLFPLLFNVSANLTTAMLFGARMCVMGSFTIATLYAPELYPTAVRATGA 419

Query: 421 GAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSDT 480
           G A+++GRIGGM+CPLVAV LV  C+   A++L  VV+  S  S +L PFETKGQELSD+
Sbjct: 420 GVASSVGRIGGMICPLVAVGLVTGCYLTEAIILFEVVMAISAFSSLLFPFETKGQELSDS 479

Query: 481 VDFTSD 486
           VD  SD
Sbjct: 480 VDHVSD 485

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224095094|ref|XP_002310344.1| predicted protein [Populus trichocarpa] gi|222853247|gb|EEE90794.1| predicted protein [Populus trichocarpa]

 Score =  530 bits (1364), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 272/486 (55%), Positives = 351/486 (72%), Gaps = 12/486 (2%)

Query: 1   MAEQGHVYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSST 60
           M + G  YTVD+A+  +GFGK+Q FVL YAG+GWV+EAME+MILSF+GP VKS+WNL+S 
Sbjct: 1   MTDGGPRYTVDDAILAMGFGKFQYFVLLYAGMGWVSEAMEMMILSFIGPAVKSDWNLTSQ 60

Query: 61  EESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLR 120
           +ESLIT+ VFAG++VGAY+WG+V+D YGRR GFL  A++T+GAG LS+F+PNYI L+  R
Sbjct: 61  QESLITSVVFAGMLVGAYSWGVVSDRYGRRKGFLVTAIITSGAGFLSAFAPNYIALLVFR 120

Query: 121 CLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWL 180
           CLVG+GLG G V  +WFLEFVP  NRGMWMVI S+FWT G++ EA  AWIIMPRL+WRWL
Sbjct: 121 CLVGLGLGGGPVLFAWFLEFVPAPNRGMWMVIISAFWTFGAIFEASLAWIIMPRLNWRWL 180

Query: 181 LGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRST 240
           L +S++PSF LL F    PESPRY CLKG+  +A R LEKIA+ N+ +LP G L      
Sbjct: 181 LAVSALPSFFLLIFYVMTPESPRYFCLKGQKGDALRVLEKIAKQNRKELPLGALATDNEI 240

Query: 241 LPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYY 300
              G+  P E         G  +  G   L   L+L S KLAR+T+LLW++ FGN+F+YY
Sbjct: 241 ELQGKNIPIE---------GMDSDMGV--LKSLLLLISPKLARSTVLLWVVFFGNAFSYY 289

Query: 301 AVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKL 360
            +VLL +EL++ +  C      S      + Y + FITS AE PGL+++A++VD  GRKL
Sbjct: 290 GLVLLTTELNNRNNTCNHTKAQSDKSSAVD-YKEVFITSFAEFPGLIVSALIVDRIGRKL 348

Query: 361 SITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGA 420
           S+  +F ++C+FLLPLV +QS  +TT LLFGAR+C+ G FT+  IYA EIYPTSVRSTG 
Sbjct: 349 SMAALFFVACIFLLPLVVHQSPRITTILLFGARICITGTFTIVFIYAPEIYPTSVRSTGM 408

Query: 421 GAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSDT 480
           G A+AMGRIGGM+CPLVAV+LV  CHQ  A+VL V V+  +   VML P ETKG EL+++
Sbjct: 409 GVASAMGRIGGMICPLVAVSLVQGCHQTAALVLFVCVMFVAGCCVMLFPHETKGLELTES 468

Query: 481 VDFTSD 486
           V  T +
Sbjct: 469 VSSTKN 474

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224095100|ref|XP_002310345.1| predicted protein [Populus trichocarpa] gi|222853248|gb|EEE90795.1| predicted protein [Populus trichocarpa]

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 262/486 (53%), Positives = 339/486 (69%), Gaps = 23/486 (4%)

Query: 1   MAEQGHVYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSST 60
           MA+ G  YTVDEAL  VGFGK+Q  VL YAG+GWV+EAME+MILSFVGP V S+W L+S 
Sbjct: 1   MADGGPRYTVDEALVTVGFGKFQFLVLLYAGMGWVSEAMEVMILSFVGPAVHSKWGLTSH 60

Query: 61  EESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLR 120
           EESLITT VFAG++VGAY WG+++D YGRR GF   A++T+ AG LS+F+PNYI L+  R
Sbjct: 61  EESLITTVVFAGMLVGAYTWGVISDKYGRRKGFFVTAIMTSVAGFLSAFAPNYIALLISR 120

Query: 121 CLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWL 180
           CLVG G+G G V L+WFLEFVP  NRG WMV+FS+FWT+G++ E   AWIIMPRL WRWL
Sbjct: 121 CLVGFGIGGGPVLLAWFLEFVPAPNRGTWMVVFSAFWTVGTIFEGGLAWIIMPRLGWRWL 180

Query: 181 LGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRST 240
           L LS++PSF+LL F    PESPRYLCLKGR  EA   L+KIA++N  +LP G +VA    
Sbjct: 181 LALSALPSFLLLVFYTLTPESPRYLCLKGRKNEALIILKKIAKLNGKELPPGVVVA---- 236

Query: 241 LPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYY 300
                             G     +G + L   L++FS +L R+T+LLW+++F N+F+YY
Sbjct: 237 ------------------GNEIELQGNNHLPEMLIIFSPRLVRSTLLLWVVIFANAFSYY 278

Query: 301 AVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKL 360
            +VLL +EL+     C      S  P + N Y   FITS AE PGL+L+A+++D  GRKL
Sbjct: 279 GLVLLTTELNDRSNTCHQTKKQSQKPANIN-YKQVFITSFAEFPGLILSALVIDRLGRKL 337

Query: 361 SITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGA 420
           S+  MF + C+FLLPLV +QS  +TT LLFGAR C+ G FT+  IYA E+YPT +R+TG 
Sbjct: 338 SMAAMFFVCCIFLLPLVVHQSTGVTTTLLFGARTCITGTFTIVYIYAPELYPTFMRTTGV 397

Query: 421 GAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSDT 480
           G A+++ RIGGMVCPLVAV+LV  CHQ  AVV    ++  + + V+L PFETKG +L+D+
Sbjct: 398 GVASSVSRIGGMVCPLVAVSLVQGCHQTAAVVFFASIVFVAGICVLLFPFETKGLDLADS 457

Query: 481 VDFTSD 486
           +  T  
Sbjct: 458 LSGTKQ 463

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|90265074|emb|CAH67747.1| H0702G05.6 [Oryza sativa Indica Group]

 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 261/483 (54%), Positives = 352/483 (72%), Gaps = 7/483 (1%)

Query: 3   EQGHVYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEE 62
           +Q   Y+VD+AL   GFG+YQ  +L+YAG+G +AEAME+M+LSFVGP+V+ EW L+S +E
Sbjct: 4   DQSATYSVDDALLSSGFGRYQILILSYAGVGLIAEAMEMMLLSFVGPSVQLEWKLTSHQE 63

Query: 63  SLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCL 122
           S+IT+ VF G+++GAY WG+V+DNYGRR GFL  A+VT+GAG LS+F+PNY++LI+LR L
Sbjct: 64  SMITSIVFVGMLIGAYTWGVVSDNYGRRRGFLFTAIVTSGAGFLSAFAPNYVSLISLRFL 123

Query: 123 VGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLG 182
           VG+GLG G V  SWFLEFVP   RG WMV+FS+FWT+G++ EA  AW +MP+  WRWLL 
Sbjct: 124 VGIGLGGGPVLASWFLEFVPAPTRGTWMVVFSAFWTVGTIFEASLAWTVMPKFGWRWLLA 183

Query: 183 LSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLP 242
           LS++PSF+LL F    PESPR+LC+KGR  EA   LEK+A++N  +LP+G+LV+ ++ + 
Sbjct: 184 LSAVPSFVLLLFYVITPESPRFLCMKGRVTEAMDVLEKMARLNNVQLPSGRLVSDKN-IE 242

Query: 243 TGERAPPELVHLLSSNGGNKT-TEGK----SGLSLFLMLFSSKLARTTILLWLLLFGNSF 297
             E +  E   LL+    + T  E K     GLS+   L S KL R T+LLW+  FGN+F
Sbjct: 243 LDELSTSESTTLLADAEEDDTIIEDKVSSFGGLSV-AKLLSPKLIRATLLLWMTFFGNAF 301

Query: 298 AYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAG 357
           +YY +VLL SELS+ +  C    + S H  DA+LY + FI+S AEIPG  L+A++VD  G
Sbjct: 302 SYYGIVLLTSELSNGNRICAKEEVESIHSNDASLYKNVFISSFAEIPGSFLSAMIVDRIG 361

Query: 358 RKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRS 417
           RKLS+  M   SC+FL PL+  +++ILT   LFGAR+C+  +FT+  IYA EIYPTSVR+
Sbjct: 362 RKLSMASMLFTSCVFLFPLIFSRTDILTRVSLFGARLCISASFTIVYIYAPEIYPTSVRT 421

Query: 418 TGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQEL 477
           TG G A+++GRIGG++CPLVAVALV +C Q TA++L  +VI  S L+V   PFETKG  L
Sbjct: 422 TGIGVASSVGRIGGILCPLVAVALVHSCQQTTAILLFELVIFLSGLAVSFFPFETKGCRL 481

Query: 478 SDT 480
           +DT
Sbjct: 482 NDT 484

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443470|ref|XP_002273636.1| PREDICTED: synaptic vesicle 2-related protein [Vitis vinifera] gi|297735684|emb|CBI18371.3| unnamed protein product [Vitis vinifera]

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 280/486 (57%), Positives = 351/486 (72%), Gaps = 6/486 (1%)

Query: 1   MAEQGHVYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSST 60
           M ++   YTVD+AL  +GFG +Q  VLAYAG+GW++EAME+M+LSFVGP V+S W LSS 
Sbjct: 1   MGDESPNYTVDDALVAMGFGNFQILVLAYAGMGWISEAMEMMLLSFVGPAVQSAWGLSSH 60

Query: 61  EESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLR 120
           EESLIT+ VFAG++VGAY+WG+V+DN+GRR GFL  A+VT+ AG LS+F+PNYI+LI LR
Sbjct: 61  EESLITSVVFAGMLVGAYSWGIVSDNHGRRKGFLITAVVTSAAGFLSAFAPNYISLIILR 120

Query: 121 CLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWL 180
           CLVG+GLG G V  SWFLEF+P  NRG WMVIFS FWT+G++ EA  AW +MP L WRWL
Sbjct: 121 CLVGLGLGGGPVLSSWFLEFIPAPNRGTWMVIFSGFWTVGTILEASLAWCVMPTLGWRWL 180

Query: 181 LGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRST 240
           L LS++PS +LL F    PESPRYLCLKGRT EA   LEKIA++N+ +LP G LV+    
Sbjct: 181 LALSALPSLLLLIFYRVTPESPRYLCLKGRTTEALSVLEKIARMNRAELPPGILVSDHQV 240

Query: 241 LPTGERAPPELVHLLSSNGGNKTTEGK-----SGLSLFLMLFSSKLARTTILLWLLLFGN 295
                  P E + LLS    + ++         G+S   ML S KL R+T+LLW++ FGN
Sbjct: 241 GVPENSNPSEDMKLLSPEADSGSSHKDIDSNMGGISSLFMLLSPKLLRSTLLLWMVFFGN 300

Query: 296 SFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDT 355
           +F+YY +VLL SEL++   +C    + S   QD N Y D FITS AE PGLLL+A  VD 
Sbjct: 301 AFSYYGLVLLTSELNNEQNKCGVAELQSEKTQDIN-YKDVFITSFAEFPGLLLSAATVDI 359

Query: 356 AGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV 415
            GRKLS++ MF L C+FLLPLV +Q   LTT LLFGAR+C+   FTV  IYA EIYPTSV
Sbjct: 360 LGRKLSMSAMFFLCCIFLLPLVFHQPQGLTTALLFGARICITVTFTVVYIYAPEIYPTSV 419

Query: 416 RSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQ 475
           R+TG G A+++GRIGGM+CPLVAV LV  CHQ  AV+L  +VI  S + V+L PFETKG+
Sbjct: 420 RTTGVGVASSVGRIGGMLCPLVAVGLVHGCHQAAAVILFEIVIFISGICVILFPFETKGR 479

Query: 476 ELSDTV 481
           EL DT+
Sbjct: 480 ELKDTL 485

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242039569|ref|XP_002467179.1| hypothetical protein SORBIDRAFT_01g020990 [Sorghum bicolor] gi|241921033|gb|EER94177.1| hypothetical protein SORBIDRAFT_01g020990 [Sorghum bicolor]

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 259/490 (52%), Positives = 350/490 (71%), Gaps = 21/490 (4%)

Query: 4   QGHVYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEES 63
           Q   YTVD+AL   GFG++Q  +L+YAG+G +AEAME+M+LSFVGP+V+ EW L+S +ES
Sbjct: 5   QSASYTVDDALLSSGFGRFQILILSYAGIGLIAEAMEMMLLSFVGPSVQLEWKLTSHQES 64

Query: 64  LITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLV 123
           +IT+ VF G+++GAY+WG+V+DNYGRR GFL  A+VT+GAG LS+F+PNY++LI+LR LV
Sbjct: 65  MITSVVFVGMLIGAYSWGVVSDNYGRRRGFLFTAIVTSGAGFLSAFAPNYLSLISLRFLV 124

Query: 124 GVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGL 183
           G+GLG G V  SWFLEFVP   RG WMV+FS+FWT+G++ EA  AW +MP+  WRWLL L
Sbjct: 125 GIGLGGGPVLGSWFLEFVPAPTRGTWMVVFSAFWTVGTILEASLAWTVMPKFGWRWLLAL 184

Query: 184 SSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARR----- 238
           S+IPSF+LL F    PESPR+LC+KGRT EA   LEK+A++N  +LP+G+LV+ +     
Sbjct: 185 SAIPSFLLLLFYAITPESPRFLCMKGRTTEAVDVLEKMARLNNVQLPSGRLVSDKNIELD 244

Query: 239 --------STLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWL 290
                   +TL +G      L     S+ G   + GK        L + KL R T+LLW+
Sbjct: 245 EVSGSSESTTLLSGAEESDNLSEDRGSDFGGIKSVGK--------LLAPKLIRATLLLWM 296

Query: 291 LLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAA 350
             FGN+FAYY +VLL SELS+ +  C    + S +  +A+LY + FI+S AEIPG  L+A
Sbjct: 297 AFFGNAFAYYGIVLLTSELSNGNRICAKQDVESVNSTNASLYKNVFISSFAEIPGSFLSA 356

Query: 351 ILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEI 410
           ++VD  GRKLS+  M   SC+FL+PLV  +++ILT   LFGAR+C+  +FT+  IYA EI
Sbjct: 357 MIVDRFGRKLSMASMLFTSCVFLVPLVFSRTDILTRISLFGARLCISASFTIVYIYAPEI 416

Query: 411 YPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPF 470
           YPT+VR+TG G A+++GRIGG++CPLVAVALV +C Q TA++L  +VI  S L+V   PF
Sbjct: 417 YPTAVRTTGIGIASSVGRIGGILCPLVAVALVHSCQQTTAILLFELVIFLSGLAVSFFPF 476

Query: 471 ETKGQELSDT 480
           ETKG  L+DT
Sbjct: 477 ETKGCRLNDT 486

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	486
TAIR|locus:2089270	500	NiaP "nicotinate transporter"	0.997	0.97	0.488	6.5e-122
WB|WBGene00014021	520	svop-1 [Caenorhabditis elegans	0.520	0.486	0.342	1.8e-62
ZFIN|ZDB-GENE-060526-336	549	svopa "SV2 related protein hom	0.473	0.418	0.387	2.9e-62
UNIPROTKB|E2QZ16	548	SVOP "Uncharacterized protein"	0.473	0.419	0.387	1.6e-61
UNIPROTKB|F6XK47	483	SVOP "Uncharacterized protein"	0.473	0.476	0.387	1.6e-61
UNIPROTKB|Q8N4V2	548	SVOP "Synaptic vesicle 2-relat	0.473	0.419	0.383	2e-61
UNIPROTKB|F1RGB1	548	SVOP "Uncharacterized protein"	0.473	0.419	0.387	2.6e-61
UNIPROTKB|G3MZU5	547	SVOP "Synaptic vesicle 2-relat	0.473	0.420	0.383	2.6e-61
UNIPROTKB|Q1JP63	548	SVOP "Synaptic vesicle 2-relat	0.473	0.419	0.383	2.6e-61
UNIPROTKB|F1NIB3	554	SVOP "Uncharacterized protein"	0.473	0.415	0.383	6.9e-61

TAIR|locus:2089270 NiaP "nicotinate transporter" [Arabidopsis thaliana (taxid:3702)]

 Score = 1199 (427.1 bits), Expect = 6.5e-122, P = 6.5e-122
 Identities = 242/495 (48%), Positives = 315/495 (63%)

Query:     1 MAEQGHVYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNXXXX 60
             MA+    +TVDEAL  +GFGK+Q +VLAYAG+GWVAEAME+M+LSFVGP V+S WN    
Sbjct:     1 MADGNTRFTVDEALVAMGFGKFQIYVLAYAGMGWVAEAMEMMLLSFVGPAVQSLWNLSAR 60

Query:    61 XXXXXXXXVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLR 120
                     VFAG+++GAY+WG+V+D +GRR GF+  A+VT  AG LS+FSPNY+ LI LR
Sbjct:    61 QESLITSVVFAGMLIGAYSWGIVSDKHGRRKGFIITAVVTFVAGFLSAFSPNYMWLIILR 120

Query:   121 CLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWL 180
             CLVG+GLG G V  SW+LEF+P  +RG WMV+FS+FWT+G++ EA  AW++MPRL WRWL
Sbjct:   121 CLVGLGLGGGPVLASWYLEFIPAPSRGTWMVVFSAFWTVGTIFEASLAWLVMPRLGWRWL 180

Query:   181 LGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRST 240
             L  SS+PS +LL F  +  ESPRYL L+GR AEA   LEKIA++NKT+LP G L +   T
Sbjct:   181 LAFSSVPSSLLLLFYRWTSESPRYLILQGRKAEALAILEKIARMNKTQLPPGVLSSELET 240

Query:   241 -LPTGERAPPELVHLLSSN-GGNKTTEXXXXXXXXXXXXXXXXA-------RTTIXXXXX 291
              L   +  P E  HLL +   G                     A       + T+     
Sbjct:   241 ELEENKNIPTENTHLLKAGESGEAVAVSKIVLKADKEPGFSLLALLSPTLMKRTLLLWVV 300

Query:   292 XFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAI 351
              FGN+FAYY VVLL +EL++   RC        +  D N Y D FI S AE PGLL++A 
Sbjct:   301 FFGNAFAYYGVVLLTTELNNSHNRCYPTEKQLRNSNDVN-YRDVFIASFAEFPGLLISAA 359

Query:   352 LVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIY 411
             +VD  GRK S+  M    C+FLLPL+++QS  +TT LLFG R+C+  AFTV  IYA EIY
Sbjct:   360 MVDRLGRKASMASMLFTCCIFLLPLLSHQSPFITTVLLFGGRICISAAFTVVYIYAPEIY 419

Query:   412 PTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQXXXXXXXXXXXXXXXXXXXXIPFE 471
             PT+VR+TG G  +++GRIGG++CPLVAV LV  CHQ                     PFE
Sbjct:   420 PTAVRTTGVGVGSSVGRIGGILCPLVAVGLVHGCHQTIAVLLFEVVILVSGICVCLFPFE 479

Query:   472 TKGQELSDTVDFTSD 486
             T G++L+D++  + +
Sbjct:   480 TSGRDLTDSISASKE 494

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0090416 "nicotinate transporter activity" evidence=IDA

GO:0090417 "N-methylnicotinate transporter activity" evidence=IDA

GO:2001142 "nicotinate transport" evidence=IDA

GO:2001143 "N-methylnicotinate transport" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

WB|WBGene00014021 svop-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 421 (153.3 bits), Expect = 1.8e-62, Sum P(2) = 1.8e-62
 Identities = 88/257 (34%), Positives = 141/257 (54%)

Query:     8 YTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNXXXXXXXXXXX 67
             +TVDEA+  +GFG++Q  +    G+ W+A+AME+M+LS + P +  EW            
Sbjct:    67 FTVDEAVEALGFGRFQLKLSILTGMAWMADAMEMMLLSLISPALACEWGISSVQQALVTT 126

Query:    68 XVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGL 127
              VF+G+++ +  WG + D +GRR G     LV    G++S  SP++  L+  R L G G+
Sbjct:   127 CVFSGMMLSSTFWGKICDRFGRRKGLTFSTLVACIMGVISGMSPHFYVLLFFRGLTGFGI 186

Query:   128 GSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIP 187
             G     ++ + EF+P + R   +V+  SFW IG+V EA+ A+ +M    WR L+ LSS+P
Sbjct:   187 GGVPQSVTLYAEFLPTAQRAKCVVLIESFWAIGAVFEALLAYFVMESFGWRALMFLSSLP 246

Query:   188 SFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERA 247
               I      + PES R+    G    A   L+  A++N+ +LP G+LV   S+   G  +
Sbjct:   247 LGIFAVASFWLPESARFDMASGHPERALETLQAAARMNRVQLPTGRLV---SSTKAGSES 303

Query:   248 PPELVHLLSSNGGNKTT 264
               ++ +LLS +   KTT
Sbjct:   304 RGDIANLLSPDL-RKTT 319

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0034220 "ion transmembrane transport" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

ZFIN|ZDB-GENE-060526-336 svopa "SV2 related protein homolog a (rat)" [Danio rerio (taxid:7955)]

 Score = 436 (158.5 bits), Expect = 2.9e-62, Sum P(2) = 2.9e-62
 Identities = 90/232 (38%), Positives = 134/232 (57%)

Query:     8 YTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNXXXXXXXXXXX 67
             + V++A+  +GFG +Q  +    GL W+A+AME+MILS + P +  EW            
Sbjct:    68 FMVEDAVEAIGFGTFQWKLSILTGLSWMADAMEMMILSILAPQLHCEWALPSWEVALLTS 127

Query:    68 XVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGL 127
              VF G+++ +  WG ++D YGR+ G     L T   G+LS+F+P Y  ++ LR LVG G+
Sbjct:   128 VVFIGMMISSSLWGNISDKYGRKTGLKMSVLWTLFYGILSAFAPIYGWILFLRALVGFGI 187

Query:   128 GSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIP 187
             G     ++ + EF+P  +R   +++   FW +G+V E + A ++MP L WRWLL LS+IP
Sbjct:   188 GGAPQSVTLYAEFLPMRSRATCILLIEIFWALGTVFEVLLAILVMPTLGWRWLLALSTIP 247

Query:   188 SFILLAFLGFQ-PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARR 238
              FI  AFL F  PES RY  L G   +A   L++IA  N   +P GKL+  R
Sbjct:   248 LFIF-AFLCFWLPESARYDVLTGNQEKALNTLKRIAAENNVPMPLGKLIVAR 298

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|E2QZ16 SVOP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 421 (153.3 bits), Expect = 1.6e-61, Sum P(2) = 1.6e-61
 Identities = 90/232 (38%), Positives = 131/232 (56%)

Query:     8 YTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNXXXXXXXXXXX 67
             + V++A+  +GFGK+Q  +    GL W+A+AME+MILS + P +  EW            
Sbjct:    68 FMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTS 127

Query:    68 XVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGL 127
              VF G++  +  WG ++D YGR+ G     L T   G+LS+F+P Y  ++ LR LVG G+
Sbjct:   128 VVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGI 187

Query:   128 GSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIP 187
             G     ++ + EF+P   R   +++   FW IG+V E I A  +MP L WRWLL LS++P
Sbjct:   188 GGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVILAVFVMPSLGWRWLLILSAVP 247

Query:   188 SFILLAFLGFQ-PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARR 238
               +L A L F  PES RY  L G   +A   L++IA  N   +P GKL+  R
Sbjct:   248 -LLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISR 298

GO:0016021 "integral to membrane" evidence=IEA

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

UNIPROTKB|F6XK47 SVOP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 421 (153.3 bits), Expect = 1.6e-61, Sum P(2) = 1.6e-61
 Identities = 90/232 (38%), Positives = 131/232 (56%)

Query:     8 YTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNXXXXXXXXXXX 67
             + V++A+  +GFGK+Q  +    GL W+A+AME+MILS + P +  EW            
Sbjct:     3 FMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTS 62

Query:    68 XVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGL 127
              VF G++  +  WG ++D YGR+ G     L T   G+LS+F+P Y  ++ LR LVG G+
Sbjct:    63 VVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGI 122

Query:   128 GSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIP 187
             G     ++ + EF+P   R   +++   FW IG+V E I A  +MP L WRWLL LS++P
Sbjct:   123 GGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVILAVFVMPSLGWRWLLILSAVP 182

Query:   188 SFILLAFLGFQ-PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARR 238
               +L A L F  PES RY  L G   +A   L++IA  N   +P GKL+  R
Sbjct:   183 -LLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISR 233

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

UNIPROTKB|Q8N4V2 SVOP "Synaptic vesicle 2-related protein" [Homo sapiens (taxid:9606)]

 Score = 420 (152.9 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
 Identities = 89/232 (38%), Positives = 131/232 (56%)

Query:     8 YTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNXXXXXXXXXXX 67
             + V++A+  +GFGK+Q  +    GL W+A+AME+MILS + P +  EW            
Sbjct:    68 FMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTS 127

Query:    68 XVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGL 127
              VF G++  +  WG ++D YGR+ G     L T   G+LS+F+P Y  ++ LR LVG G+
Sbjct:   128 VVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGI 187

Query:   128 GSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIP 187
             G     ++ + EF+P   R   +++   FW IG+V E + A  +MP L WRWLL LS++P
Sbjct:   188 GGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLILSAVP 247

Query:   188 SFILLAFLGFQ-PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARR 238
               +L A L F  PES RY  L G   +A   L++IA  N   +P GKL+  R
Sbjct:   248 -LLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISR 298

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=ISS

UNIPROTKB|F1RGB1 SVOP "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 421 (153.3 bits), Expect = 2.6e-61, Sum P(2) = 2.6e-61
 Identities = 90/232 (38%), Positives = 131/232 (56%)

Query:     8 YTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNXXXXXXXXXXX 67
             + V++A+  +GFGK+Q  +    GL W+A+AME+MILS + P +  EW            
Sbjct:    68 FMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTS 127

Query:    68 XVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGL 127
              VF G++  +  WG ++D YGR+ G     L T   G+LS+F+P Y  ++ LR LVG G+
Sbjct:   128 VVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGI 187

Query:   128 GSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIP 187
             G     ++ + EF+P   R   +++   FW IG+V E I A  +MP L WRWLL LS++P
Sbjct:   188 GGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVILAVFVMPSLGWRWLLLLSAVP 247

Query:   188 SFILLAFLGFQ-PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARR 238
               +L A L F  PES RY  L G   +A   L++IA  N   +P GKL+  R
Sbjct:   248 -LLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISR 298

GO:0016021 "integral to membrane" evidence=IEA

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

UNIPROTKB|G3MZU5 SVOP "Synaptic vesicle 2-related protein" [Bos taurus (taxid:9913)]

 Score = 420 (152.9 bits), Expect = 2.6e-61, Sum P(2) = 2.6e-61
 Identities = 89/232 (38%), Positives = 131/232 (56%)

Query:     8 YTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNXXXXXXXXXXX 67
             + V++A+  +GFGK+Q  +    GL W+A+AME+MILS + P +  EW            
Sbjct:    67 FMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTS 126

Query:    68 XVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGL 127
              VF G++  +  WG ++D YGR+ G     L T   G+LS+F+P Y  ++ LR LVG G+
Sbjct:   127 VVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGI 186

Query:   128 GSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIP 187
             G     ++ + EF+P   R   +++   FW IG+V E + A  +MP L WRWLL LS++P
Sbjct:   187 GGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLILSAVP 246

Query:   188 SFILLAFLGFQ-PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARR 238
               +L A L F  PES RY  L G   +A   L++IA  N   +P GKL+  R
Sbjct:   247 -LLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISR 297

GO:0016021 "integral to membrane" evidence=IEA

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

UNIPROTKB|Q1JP63 SVOP "Synaptic vesicle 2-related protein" [Bos taurus (taxid:9913)]

 Score = 420 (152.9 bits), Expect = 2.6e-61, Sum P(2) = 2.6e-61
 Identities = 89/232 (38%), Positives = 131/232 (56%)

Query:     8 YTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNXXXXXXXXXXX 67
             + V++A+  +GFGK+Q  +    GL W+A+AME+MILS + P +  EW            
Sbjct:    68 FMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTS 127

Query:    68 XVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGL 127
              VF G++  +  WG ++D YGR+ G     L T   G+LS+F+P Y  ++ LR LVG G+
Sbjct:   128 VVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGI 187

Query:   128 GSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIP 187
             G     ++ + EF+P   R   +++   FW IG+V E + A  +MP L WRWLL LS++P
Sbjct:   188 GGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLILSAVP 247

Query:   188 SFILLAFLGFQ-PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARR 238
               +L A L F  PES RY  L G   +A   L++IA  N   +P GKL+  R
Sbjct:   248 -LLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISR 298

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

UNIPROTKB|F1NIB3 SVOP "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 419 (152.6 bits), Expect = 6.9e-61, Sum P(2) = 6.9e-61
 Identities = 89/232 (38%), Positives = 131/232 (56%)

Query:     8 YTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNXXXXXXXXXXX 67
             + V++A+  +GFGK+Q  +    GL W+A+AME+MILS + P +  EW            
Sbjct:    74 FMVEDAVEAIGFGKFQWKLSVITGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTS 133

Query:    68 XVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGL 127
              VF G++  +  WG ++D YGR+ G     L T   G+LS F+P Y  ++ LR LVG G+
Sbjct:   134 VVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSGFAPIYSWILVLRGLVGFGI 193

Query:   128 GSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIP 187
             G     ++ + EF+P   R   +++   FW IG+V E + A ++MP L WRWLL LS++P
Sbjct:   194 GGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVLLAVLVMPTLGWRWLLILSALP 253

Query:   188 SFILLAFLGFQ-PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARR 238
               +L A L F  PES RY  L G   +A   L++IA  N   +P GKL+  R
Sbjct:   254 -LLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISR 304

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8N4V2	SVOP_HUMAN	No assigned EC number	0.3291	0.9115	0.8083	yes	no
Q940M4	OCT7_ARATH	No assigned EC number	0.5322	0.9958	0.968	yes	no
P30638	YOU1_CAEEL	No assigned EC number	0.3216	0.9279	0.8673	yes	no
Q5R5T8	SVOP_PONAB	No assigned EC number	0.3278	0.9156	0.8120	yes	no
Q1JP63	SVOP_BOVIN	No assigned EC number	0.3278	0.9156	0.8120	yes	no
Q9Z2I7	SVOP_RAT	No assigned EC number	0.3237	0.9156	0.8120	yes	no
Q8BFT9	SVOP_MOUSE	No assigned EC number	0.3257	0.9156	0.8120	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_scaffold_164000007 hypothetical protein (492 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	486
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	6e-79
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	4e-35
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	2e-30
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	6e-30
TIGR00891	405	TIGR00891, 2A0112, putative sialic acid transporte	6e-23
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	6e-21
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	3e-16
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	2e-14
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	5e-12
TIGR00887	502	TIGR00887, 2A0109, phosphate:H+ symporter	6e-12
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	5e-10
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	7e-09
PRK12307	426	PRK12307, PRK12307, putative sialic acid transport	1e-08
TIGR00893	399	TIGR00893, 2A0114, D-galactonate transporter	3e-08
PRK03893	496	PRK03893, PRK03893, putative sialic acid transport	9e-08
TIGR00881	379	TIGR00881, 2A0104, phosphoglycerate transporter fa	1e-06
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	4e-06
TIGR00711	485	TIGR00711, efflux_EmrB, drug resistance transporte	4e-06
TIGR00883	394	TIGR00883, 2A0106, metabolite-proton symporter	3e-04
TIGR00710	385	TIGR00710, efflux_Bcr_CflA, drug resistance transp	3e-04
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	4e-04
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	7e-04

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score =  254 bits (651), Expect = 6e-79
 Identities = 138/489 (28%), Positives = 224/489 (45%), Gaps = 58/489 (11%)

Query: 2   AEQGHVYTVDEALTHVGFGKYQCFVLAYAGLG--WVAEAMEIMILSFV--GPTVKSEWNL 57
            E    + VD+       G   C  L  + LG       ++    S+     T+ +EW+L
Sbjct: 65  PESCLRFMVDQWANPSLLG---CEPLKLSDLGLAATEPCLDGWEYSYDTFSSTIVTEWDL 121

Query: 58  SSTEE---SLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYI 114
              +     L  +  F G+++G++ +G ++D +GR+   L   LVTA +G+L++FSPNY 
Sbjct: 122 VCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYT 181

Query: 115 TLITLRCLVGVGLGSGHVF-LSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMP 173
             +  R LVG+G+G   V  +    EF+P   R +   +   F+++G V   + A+ I  
Sbjct: 182 VFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP- 240

Query: 174 RLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGK 233
             DWRWL    S+P+F+      F PESPR+L  +GR  EA + L++IA++N  KLP   
Sbjct: 241 --DWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEV 298

Query: 234 LVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLF 293
           L                   L         +  K   S   +  +  L +TT+ L +L F
Sbjct: 299 LS------------LSLEKDL---------SSSKKQYSFLDLFRTPNLRKTTLCLMMLWF 337

Query: 294 GNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILV 353
             +F+YY +VL +  L                    N+Y+D FI+ L E+P  L+  +L+
Sbjct: 338 TTAFSYYGLVLDLGNL------------------GGNIYLDLFISGLVELPAKLITLLLI 379

Query: 354 DTAGRKLSITIMFTL--SCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIY 411
           D  GR+ ++     L    L LL  V      L T L    +  +  AF +  +Y AE+Y
Sbjct: 380 DRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELY 439

Query: 412 PTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFE 471
           PT VR+ G G  + M R+G ++ P +          +  V+   + ++  IL++ L   E
Sbjct: 440 PTVVRNLGVGVCSTMARVGSIISPFLVYLGEKW-LFLPLVLFGGLALLAGILTLFLP--E 496

Query: 472 TKGQELSDT 480
           TKG  L +T
Sbjct: 497 TKGVPLPET 505

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score =  134 bits (340), Expect = 4e-35
 Identities = 103/427 (24%), Positives = 174/427 (40%), Gaps = 48/427 (11%)

Query: 22  YQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWG 81
           YQ   +  + L  + +  ++  + F  P + +EW L   +   + ++   G+  GA  +G
Sbjct: 14  YQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFG 73

Query: 82  LVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFL-EF 140
            +AD  GRR   L   L+ +   LL + + N   L+ LR L G+GLG     L+  + E+
Sbjct: 74  PLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEY 133

Query: 141 VPPSNRGMWMVIFSSFWTIG-SVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLG-FQ 198
            P   RG  + +    + IG +V   +  W+I P   WR L  +  I   +LL  L  F 
Sbjct: 134 APKRFRGTAVGLMFCGYPIGAAVGGFLAGWLI-PVFGWRSLFYVGGIAPLLLLLLLMRFL 192

Query: 199 PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSN 258
           PES  +L  K R     R +  IA                   P  +      +    + 
Sbjct: 193 PESIDFLVSK-RPETVRRIVNAIA-------------------PQMQAEAQSALPEQKAT 232

Query: 259 GGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRS 318
            G K        S+F  LF  K AR T+LLWLL F      Y +   + +L         
Sbjct: 233 QGTKR-------SVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELGF--- 282

Query: 319 PLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT 378
                     +       + +   + G ++   L D  G ++   ++  L  +F + + +
Sbjct: 283 --------SLSLAATGGALFNFGGVIGSIIFGWLADRLGPRV-TALLLLLGAVFAVLVGS 333

Query: 379 YQSN---ILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCP 435
              +   +L  G + G    V G  +      A  YPT++R+TG G A  +GR+G ++ P
Sbjct: 334 TLFSPTLLLLLGAIAG--FFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGP 391

Query: 436 LVAVALV 442
           ++A  L+
Sbjct: 392 ILAGYLL 398

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score =  122 bits (308), Expect = 2e-30
 Identities = 94/457 (20%), Positives = 164/457 (35%), Gaps = 71/457 (15%)

Query: 46  FVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGL 105
           F   T       S+    LI +    G ++G+   G + D +GR+   L   ++     L
Sbjct: 32  FGALTSIGACAASTVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGAL 91

Query: 106 LSSFSP--NYITLITLRCLVGVGLGSGHVFLSWFL-EFVPPSNRGMWMVIFSSFWTIGSV 162
           L  F+   ++  LI  R +VG+G+G   V +  ++ E  P   RG    ++    T G +
Sbjct: 92  LQGFAKGKSFYMLIVGRVIVGLGVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGIL 151

Query: 163 SEAIGAWI------IMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHR 216
              + A I            WR  LGL  +P+ +LL  L F PESPR+L LKG+  EA  
Sbjct: 152 ---VAAIIGLGLNKYSNSDGWRIPLGLQFVPAILLLIGLLFLPESPRWLVLKGKLEEARA 208

Query: 217 ALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLML 276
            L K+  V+                        E+     S   +   E  S L LF   
Sbjct: 209 VLAKLRGVSDVD--------------------QEIQEEKDSLERSVEAEKASWLELFRGK 248

Query: 277 FSSKLARTTILLWLLLFG---NSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYI 333
              +     ++L +       N+  YY+  +                       +     
Sbjct: 249 TVRQRLLMGVMLQIFQQLTGINAIFYYSPTIF----------------------ETLGLS 286

Query: 334 DEFITSLAE----IPGLLLAAILVDTAGRK-LSITIMFTLSCLFLLPLVTY--QSNILTT 386
           D  + ++           +A  LVD  GR+ L +     ++  FL+  V     +     
Sbjct: 287 DSLLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAKSKGA 346

Query: 387 GLLFGARMCVMGAF------TVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVA 440
           G++    + +  AF       V  +  +E++P  VR      A A   +   +   +   
Sbjct: 347 GIVAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPI 406

Query: 441 LVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQEL 477
           +         +V   ++++  +     +P ETKG+ L
Sbjct: 407 ITGAIGGYVFLVFAGLLVLFILFVFFFVP-ETKGRTL 442

Length = 449

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score =  123 bits (310), Expect = 6e-30
 Identities = 85/330 (25%), Positives = 142/330 (43%), Gaps = 26/330 (7%)

Query: 14  LTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGL 73
           +   G G++Q  +    GL  +A+ +E+ ++ FV P+ + +  +  + + ++   V+ G+
Sbjct: 156 IQECGHGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGM 215

Query: 74  VVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HV 132
           +VGA+ WG +AD  GR+   L    V       SSF   Y   +  R L G G+G    +
Sbjct: 216 MVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPI 275

Query: 133 FLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLG---------- 182
             S+F EF+    RG  +     FW IG +  A  AW I+P   W + +G          
Sbjct: 276 VFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRV 335

Query: 183 ---LSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRS 239
              + + P    +  L F PESPR+    G+  EA   L+ I   N     + + V   +
Sbjct: 336 FVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVN 395

Query: 240 TLPTGERAPPELVHLLSSNGG-------NKTTEGKSGLSLFLMLFSSKLARTTILLWLLL 292
            + T  +   EL+ + S  G           +EG      FL  F+ ++   TI L  + 
Sbjct: 396 HIKTIHQE-DELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVW 454

Query: 293 FGNSFAYYAVVL----LISELSSLDTRCRS 318
           F  SF YY + +    +I  L + D    +
Sbjct: 455 FTLSFGYYGLSVWFPDMIKHLQADDYAALT 484

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter

 Score =  100 bits (250), Expect = 6e-23
 Identities = 92/451 (20%), Positives = 175/451 (38%), Gaps = 64/451 (14%)

Query: 13  ALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAG 72
              H+   ++  F  A+  LGW+ +A +  +++ V   V  E+ L++ + + + ++    
Sbjct: 2   WYRHLTRAQWNAFSAAW--LGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALIS 59

Query: 73  LVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHV 132
              GA  +GL  D YGRR+  +   ++ +   L   F+P YIT+   R ++G+G+G  + 
Sbjct: 60  RWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYG 119

Query: 133 FLSWF-LEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLD--WRWLLGLSSIPSF 189
             + + +E  P   R     +  S + +G+V  A    +++P     WR L  +S +P  
Sbjct: 120 SSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPII 179

Query: 190 ILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPP 249
             L      PE+  +        E H     +  +          +A             
Sbjct: 180 FALWLRKNIPEAEDW-------KEKHAGKALVRTMVDILYGGEHRIANI----------- 221

Query: 250 ELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISEL 309
                                   +M  ++ + ++    W       F Y  V++L + L
Sbjct: 222 ------------------------VMTLAAAMVQSAGKRWPT-----FVYLVVLVLFANL 252

Query: 310 SS------LDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSIT 363
            S      L T  ++ L  S H     +      +++  I G  +   L D  GR+ +  
Sbjct: 253 YSHPIQDLLPTYLKADLGLSPHTVANIV----VFSNIGAIVGGCVFGFLGDWLGRRKAYV 308

Query: 364 IMFTLSCLFLLPLVTYQSNILTTGL-LFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGA 422
                  L ++P+    +N+   GL LF  +M V G + +   +  E +PT  R+ G G 
Sbjct: 309 CSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGF 368

Query: 423 ANAMGRIGGMVCPLVAVALVANCHQMTAVVL 453
              +G +GG + P++  AL+A         L
Sbjct: 369 TYQLGNLGGALAPIIG-ALLAQRLDEYGTAL 398

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 95.1 bits (237), Expect = 6e-21
 Identities = 101/446 (22%), Positives = 169/446 (37%), Gaps = 54/446 (12%)

Query: 57  LSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEAL--VTAGAG-LLSSFSPNY 113
            SS+   L+ +    G  +GA   G ++D +GR+   L  AL  V       L++F+ + 
Sbjct: 68  YSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSV 127

Query: 114 ITLITLRCLVGVGLGSGHVFLSWFL-EFVPPSNRGMWMVIFSSFWTIGSVSEAI---GAW 169
             LI  R L+G+G+G     +  +L E  P + RG    ++    T G +       G  
Sbjct: 128 EMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKV 187

Query: 170 IIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKL 229
            +   L WR  LGL  IP+ +L   L F PESPR+L  KGR  EA ++L ++     T  
Sbjct: 188 SLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARL---RGTSG 244

Query: 230 PNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILL- 288
            + +L+     +          V               S  SLF      +      ++ 
Sbjct: 245 EDKELLDELELIDIKRSIEKRSV-------------QPSWGSLFSSTRRIRRRLFLGVVL 291

Query: 289 -WLLLF--GNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPG 345
            W   F   N+  YY+  +  +   S D       + S             I        
Sbjct: 292 QWFQQFTGINAIMYYSPTIFENAGVSTDH----AFLVS------------IIVGAVNFAF 335

Query: 346 LLLAAILVDTAGRK--LSITIMFTLSCLFLLPLVTYQS---NILTTGLLFGARMCVMGAF 400
             +A  LVD  GR+  L I       CLF+L ++       +  ++G +    + +  AF
Sbjct: 336 TFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAF 395

Query: 401 ------TVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLL 454
                  V  +  +EI+P S+R  G   A A   +   +   +   ++ +       +  
Sbjct: 396 FAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFF 455

Query: 455 VVVIVTSILSVMLIPFETKGQELSDT 480
             + V  ++ V     ETKG+ L + 
Sbjct: 456 GGLNVLGLIFVYFFLPETKGRTLEEI 481

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 79.7 bits (197), Expect = 3e-16
 Identities = 46/172 (26%), Positives = 86/172 (50%), Gaps = 1/172 (0%)

Query: 27  LAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADN 86
           L    LG+    ++  +LS   P +  +  LS+++  LI ++   G  +G+   G ++D 
Sbjct: 1   LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60

Query: 87  YGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHV-FLSWFLEFVPPSN 145
           +GRR   L   L+ A   LL +F+ +   L+  R L+G+G G+ +    +   E+ PP  
Sbjct: 61  FGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE 120

Query: 146 RGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGF 197
           RG  + +FS+ + +G++   +   ++   L WRWL  + +I   +L   L F
Sbjct: 121 RGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLF 172

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 74.0 bits (182), Expect = 2e-14
 Identities = 73/406 (17%), Positives = 135/406 (33%), Gaps = 69/406 (16%)

Query: 32  LGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRM 91
             ++A     ++   +   +  +  +S TE  L+ T+   G  +     G ++D +GRR 
Sbjct: 4   AAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRR 63

Query: 92  GFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGH-VFLSWFLEFVPPSNRGMWM 150
             L   L+ A   LL  F+ +   L+ LR L G+G G+      +   ++ PP  RG  +
Sbjct: 64  VLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRAL 123

Query: 151 VIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGR 210
            + S+ + +G+    +   ++     WR    + +I + +                L  R
Sbjct: 124 GLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLA---------ALLLPR 174

Query: 211 TAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGL 270
                +  +   +     +P  KL+ R                                L
Sbjct: 175 PPPESKRPKPAEEAPAPLVPAWKLLLRDPV-----------------------------L 205

Query: 271 SLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDAN 330
            L L L     A   +L +L L+       A++              + L+         
Sbjct: 206 WLLLALLLFGFAFFALLTYLPLYQEVLGLSALL--------------AGLLLG------- 244

Query: 331 LYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMF---TLSCLFLLPLVTYQSNILTTG 387
                 +  L    G LL   L D  GR+  + +      L+ L L  L   +S++    
Sbjct: 245 ------LAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLV 298

Query: 388 LLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMV 433
            L          F       +++ P   R T +G  N  G +GG +
Sbjct: 299 ALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGAL 344

Length = 346

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 67.3 bits (165), Expect = 5e-12
 Identities = 50/187 (26%), Positives = 77/187 (41%), Gaps = 12/187 (6%)

Query: 276 LFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDE 335
           LF    A  T+LLW+  F      Y    L++ L SL        +       +   + +
Sbjct: 213 LFGEGRATATLLLWISYFFTLIVLY---FLLNWLPSL--------LVGQGLSRSQAGLVQ 261

Query: 336 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMC 395
              ++    G LL   L+D    +  + +++      L  L    S        F A + 
Sbjct: 262 IAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLF 321

Query: 396 VMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLV 455
           V+G  +V    A   YPT VR TG GAA A+GR+G M  PL+A  L+A   + T  V+  
Sbjct: 322 VVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLA-LGRSTVGVIGA 380

Query: 456 VVIVTSI 462
            + V  +
Sbjct: 381 SIPVILV 387

Length = 406

>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter

 Score = 67.4 bits (165), Expect = 6e-12
 Identities = 121/525 (23%), Positives = 197/525 (37%), Gaps = 98/525 (18%)

Query: 18  GFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTV-----KSEWNLSSTEESLITTSVFAG 72
            FG      +  AG+G+  ++ ++  +S V   +       +  L S+  + +  S   G
Sbjct: 9   PFGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIG 68

Query: 73  LVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNY------ITLITLRCLVGVG 126
            + G   +G +AD  GR+  +  E ++   A + S  SP         TL   R  +GVG
Sbjct: 69  TLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVG 128

Query: 127 LGSGHVFLSWFL--EFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIM------------ 172
           +G G   LS  +  EF     RG  M    +    G ++ AI A I++            
Sbjct: 129 IG-GDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAAD 187

Query: 173 ---------PRLD--WRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKI 221
                    P +D  WR L+G  ++P+ + L F    PE+PRY     +  E        
Sbjct: 188 EASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVE-------Q 240

Query: 222 AQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKL 281
           A  + + +   K+ A    +   E+A   +    +S     T   K        L     
Sbjct: 241 AASDMSAVLQVKIEAEPDEV---EKASTAVEVPKASWSDFFTHFFKW--RHGKHLLG--- 292

Query: 282 ARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLA 341
              T   W LL     A+Y V L    + S        + +S      N Y + + T++ 
Sbjct: 293 ---TAGSWFLL---DIAFYGVNLNQKVILSA-------IGYSPPAATNNAYEELYKTAVG 339

Query: 342 EI--------PGLLLAAILVDTAGRKLSITIM--FTLSCLFLLPLVTYQSNILTTGLLFG 391
            +        PG  +   LVD  GRK  I +M  F L+ LF +    Y  N L+T     
Sbjct: 340 NLIIALAGTVPGYWVTVFLVDIIGRK-PIQLMGFFILTVLFFVLGFAY--NHLSTHGFLA 396

Query: 392 ARMCVMGAF-------TVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALV-- 442
             + V+  F         + I   E++PT  RST  G + A G+ G ++     + L   
Sbjct: 397 --IYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQH 454

Query: 443 --------ANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSD 479
                           + +  + +   IL  +LIP ETKG+ L +
Sbjct: 455 GDPTKGYPTGIWMGHVLEIFALFMFLGILFTLLIP-ETKGKSLEE 498

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 60.8 bits (148), Expect = 5e-10
 Identities = 55/203 (27%), Positives = 82/203 (40%), Gaps = 11/203 (5%)

Query: 268 SGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQ 327
           + L L L L    L R  +LL L  F  SF YY ++  +             L       
Sbjct: 160 AILGLLLALLLLFLLRLLLLLALAFFLLSFGYYGLLTYLPLY----------LQEVLGLS 209

Query: 328 DANLYIDEFITSLAEIPGLLLAAILVDTAGRKLS-ITIMFTLSCLFLLPLVTYQSNILTT 386
            A   +   +  L  I G LL  +L D  GR+   + I   L+ L LL L    S  L  
Sbjct: 210 AAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLL 269

Query: 387 GLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH 446
             L      +  AF   L  A+E+ P   R T +G  N  G +GG + PL+A  L+    
Sbjct: 270 VALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG 329

Query: 447 QMTAVVLLVVVIVTSILSVMLIP 469
                ++L  + + + L ++L+P
Sbjct: 330 YGGVFLILAALALLAALLLLLLP 352

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score = 57.4 bits (139), Expect = 7e-09
 Identities = 50/203 (24%), Positives = 84/203 (41%), Gaps = 34/203 (16%)

Query: 46  FVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGL 105
           FV P   SE + +++       S   G ++G    G  ++ +GRR      A++   + L
Sbjct: 42  FVAPQNLSE-SAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISAL 100

Query: 106 LSSF---------SPNYITLITL---RCL--VGVGLGSGHVFLSWFLEFVPPSNRGMWMV 151
            S++           N   +      R +  +GVGL S  +   +  E  P   RG  +V
Sbjct: 101 GSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASM-LSPMYIAEIAPAHIRGK-LV 158

Query: 152 IFSSF-------------WTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQ 198
            F+ F             + I    +A  +W+      WR++    +IP+ + L  L F 
Sbjct: 159 SFNQFAIIFGQLVVYFVNYFIARSGDA--SWLNT--DGWRYMFASEAIPALLFLMLLYFV 214

Query: 199 PESPRYLCLKGRTAEAHRALEKI 221
           PE+PRYL  +G+  +A   L KI
Sbjct: 215 PETPRYLMSRGKQEQAEGILRKI 237

Length = 479

>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional

 Score = 56.9 bits (137), Expect = 1e-08
 Identities = 88/455 (19%), Positives = 162/455 (35%), Gaps = 74/455 (16%)

Query: 30  AGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGR 89
           A LG+V +  + M++ ++   +K++  L+  E + + T+ F G   G   +GL+AD +GR
Sbjct: 23  AWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGR 82

Query: 90  RMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWF-LEFVPPSNRGM 148
           +   +   +  +    LS  +   I L   R +VG+G+   +   S + +E  P   +  
Sbjct: 83  KPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSK 142

Query: 149 WMVIFSSFWTIGSVSEAIGAWIIMPRL----DWRWLLGLSSIPSFILLAFLGFQPESPRY 204
                 S + IG++  A      MP       WR    +  +P  +++      PES  +
Sbjct: 143 ASAFLVSGFGIGNIIAA----YFMPSFAEAYGWRAAFFVGLLPVLLVIYIRARAPESKEW 198

Query: 205 L--CLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNK 262
               L G+   +  A    +   K        +  R+  P                    
Sbjct: 199 EEAKLSGKGKHSQSAWSVFSLSMKG-------LFNRAQFPL------------------- 232

Query: 263 TTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMF 322
                  L +F++LFS             +FG ++  + ++         DT   S LM 
Sbjct: 233 ------TLCVFIVLFS-------------IFGANWPIFGLLPTYLAGEGFDTGVVSNLM- 272

Query: 323 SHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY-QS 381
                           +   + G ++  +  D  G K + +I   +S LF+ PL    Q 
Sbjct: 273 -------------TAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQD 319

Query: 382 NILTTGL-LFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVA 440
           N L  G  LFG     +G   +   +  + +P  VR  G G    +    G    + A  
Sbjct: 320 NYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATW 379

Query: 441 LVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQ 475
           L           L  +V   +   +++I      +
Sbjct: 380 L--GITMGLGAALTFIVAFWTATILLIIGLSIPDR 412

Length = 426

>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 44/184 (23%), Positives = 79/184 (42%), Gaps = 15/184 (8%)

Query: 32  LGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRM 91
           L  V   ++   LSF  P ++ +  LS+ +   + ++   G VVG +  G + D +G R 
Sbjct: 1   LVTVINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARK 60

Query: 92  GFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGL-----GSGHVFLSWFLEFVPPSNR 146
                 ++      L +F+  Y++L  LR L+G        G   +  SWF    P S R
Sbjct: 61  TLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWF----PASER 116

Query: 147 GMWMVIFSSFWTIGSV-SEAIGAWIIMPRLDWRWLLGLSSIPSFIL----LAFLGFQPES 201
              + IF+S   +G +    +  WI++    W+W   +  +   I     L F+   P+ 
Sbjct: 117 ATAVSIFNSAQGLGGIIGGPLVGWILI-HFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQK 175

Query: 202 PRYL 205
            ++L
Sbjct: 176 AKWL 179

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399

>gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional

 Score = 53.9 bits (130), Expect = 9e-08
 Identities = 90/447 (20%), Positives = 174/447 (38%), Gaps = 40/447 (8%)

Query: 30  AGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGR 89
           A LG++ +  + ++++ V   V+ E+ L++ + + + ++ F     G    G + D YGR
Sbjct: 25  AWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGR 84

Query: 90  RMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLG------SGHVFLSWFLEFVPP 143
           R+  +   ++ +   L   F+P Y TL   R ++G+G+       + +V  SW     P 
Sbjct: 85  RLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESW-----PK 139

Query: 144 SNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPR 203
             R        S ++IG+V  A    +++P   WR L  +  +P    L      PE+  
Sbjct: 140 HLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPIIFALWLRKNLPEAED 199

Query: 204 YLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRST----LPTGERAPPELVHLLSSNG 259
           +       A   R +  I    + ++ N  L    +        G      +V +L    
Sbjct: 200 WKEKHAGKA-PVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVL---- 254

Query: 260 GNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSP 319
                   +    F++  S K   T ++L +++   +F Y   +      + L T  ++ 
Sbjct: 255 ---GLLCAAIFISFMVQSSGKRWPTGVMLMVVVLF-AFLYSWPI-----QALLPTYLKTD 305

Query: 320 LMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPL--V 377
           L +  H   AN+    F +      G  +   L D  G + +      +S L ++P+  +
Sbjct: 306 LGYDPH-TVANVL---FFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAI 361

Query: 378 TYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLV 437
              +  +   LLF  +M   G   +        + T  R+ G G    +G +GG + P++
Sbjct: 362 GGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPIL 421

Query: 438 AVALVANCHQMTA-----VVLLVVVIV 459
              +       TA       L  VVI+
Sbjct: 422 GALIAQRLDLGTALASLSFSLTFVVIL 448

Length = 496

>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 41/174 (23%), Positives = 63/174 (36%), Gaps = 24/174 (13%)

Query: 44  LSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGA 103
            +   P +  E  LS T+  L+ +S      +  +  G V+D    R+ FL   L+    
Sbjct: 14  FALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRV-FLPIGLILCAI 72

Query: 104 -GLLSSFSPNYITLITLRCLVGV--GLG---SGHVFLSWFLEFVPPSNRGMWMVIFSSFW 157
             L   FS +   +  L  L G+  G+G    G     WF      S RG W+    SFW
Sbjct: 73  VNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWF----SRSERGTWV----SFW 124

Query: 158 TIGS-VSEAIGAWIIMP----RLDWRWLLGLSS----IPSFILLAFLGFQPESP 202
                V   +   +++        W W+  +      I S I    L   P+S 
Sbjct: 125 NCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSC 178

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score = 49.2 bits (117), Expect = 4e-06
 Identities = 37/154 (24%), Positives = 73/154 (47%), Gaps = 16/154 (10%)

Query: 331 LYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCL--FLLPLVTYQSNILTTGL 388
           +Y   F+ +LA +PG +++A+L+D  GR   +     LSC+  F L     +S ++    
Sbjct: 597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMI---- 652

Query: 389 LFGARMCVMGAFTVSL-----IYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVA 443
              A +C+ G  +++      +   E+YP+  R+T  G  NA+ +   ++  L+  + V 
Sbjct: 653 ---ALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVG 709

Query: 444 NCHQMTAVVLLVVVIVTSILSVMLIPFETKGQEL 477
                  +     +    +L++ L P +T+GQ L
Sbjct: 710 ITKAAPILFASAALACGGLLALKL-P-DTRGQVL 741

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA subfamily

 Score = 48.9 bits (117), Expect = 4e-06
 Identities = 40/176 (22%), Positives = 66/176 (37%), Gaps = 7/176 (3%)

Query: 32  LGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRM 91
           LG     ++  I++   PT+  +   S ++   + TS      +     G +A  +G R 
Sbjct: 9   LGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRR 68

Query: 92  GFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLG--SGHVFLSWFLEFVPPSNRGMW 149
            FL          LL   +PN   +I  R + G G G      F +    + PP  RG  
Sbjct: 69  LFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIY-PPEKRGRA 127

Query: 150 MVIFSSFWTIGSVSEAI-GAWIIMPRLDWRWLLGLSSIP--SFILLAFLGFQPESP 202
           M I+     +        G WII     WRW+  ++       +++AF     + P
Sbjct: 128 MAIWGLTVLVAPALGPTLGGWII-ENYHWRWIFLINVPIGIIVVVVAFFILPRDKP 182

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other]. Length = 485

>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter

 Score = 42.6 bits (101), Expect = 3e-04
 Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 5/109 (4%)

Query: 348 LAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGA----FTVS 403
           L+  L D  GR+  + I   L+ L  +PL+    +  +  L F   + +           
Sbjct: 274 LSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGMALIGGMYTGPM 333

Query: 404 LIYAAEIYPTSVRSTGAG-AANAMGRIGGMVCPLVAVALVANCHQMTAV 451
             +  E++PT VR TGA  A N  G I G   P +A ALVA      A+
Sbjct: 334 GSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAI 382

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394

>gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA subfamily

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 31/133 (23%), Positives = 52/133 (39%), Gaps = 3/133 (2%)

Query: 63  SLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCL 122
            +  T    G   G   WG ++D YGRR   L    + A + L  + S N  TL+ LR +
Sbjct: 43  QMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFV 102

Query: 123 VGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWT--IGSVSEAIGAWIIMPRLDWRWL 180
              G  +G V     +  + P      +            +V+  +G +I++  L W  +
Sbjct: 103 QAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILV-WLSWHAI 161

Query: 181 LGLSSIPSFILLA 193
               S+   +L A
Sbjct: 162 FAFLSLAGILLSA 174

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. Length = 385

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 31/134 (23%), Positives = 55/134 (41%), Gaps = 1/134 (0%)

Query: 337 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCV 396
             SL       LA  L D  GR+  + I   L  L LL L+   S  L   L     +  
Sbjct: 40  AFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGG 99

Query: 397 MGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH-QMTAVVLLV 455
              F  +    A+ +P   R    G  +A   +G  + PL+   L +    +   ++L +
Sbjct: 100 GALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAI 159

Query: 456 VVIVTSILSVMLIP 469
           + ++ ++L+ +L+P
Sbjct: 160 LALLAAVLAALLLP 173

Length = 346

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 41.5 bits (98), Expect = 7e-04
 Identities = 40/174 (22%), Positives = 78/174 (44%), Gaps = 2/174 (1%)

Query: 26  VLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVAD 85
           +L  A   ++       +L+++   ++    LS+ E  L+ +    G ++GA   GL++D
Sbjct: 177 LLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSD 236

Query: 86  NYGRRMGFLGEALVTAGAG-LLSSFSPNYITLITLRCLVGVGLGSGH-VFLSWFLEFVPP 143
             GRR   L   L+ A  G LL + +P+   L+    L+G GLG      L+   E  PP
Sbjct: 237 RLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPP 296

Query: 144 SNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGF 197
             RG    +F++F ++G     + A +++    +  +  + +  + +    L  
Sbjct: 297 EARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLL 350

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	486
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	100.0
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	100.0
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	100.0
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	100.0
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	100.0
PRK10077	479	xylE D-xylose transporter XylE; Provisional	100.0
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	100.0
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	100.0
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	100.0
PRK10642	490	proline/glycine betaine transporter; Provisional	100.0
PRK11663	434	regulatory protein UhpC; Provisional	100.0
TIGR00898	505	2A0119 cation transport protein.	100.0
KOG0569	485	consensus Permease of the major facilitator superf	100.0
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	100.0
PRK12307	426	putative sialic acid transporter; Provisional	100.0
PRK03545	390	putative arabinose transporter; Provisional	100.0
TIGR00891	405	2A0112 putative sialic acid transporter.	100.0
PRK10406	432	alpha-ketoglutarate transporter; Provisional	100.0
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	100.0
PRK09705	393	cynX putative cyanate transporter; Provisional	100.0
PRK09952	438	shikimate transporter; Provisional	100.0
PRK10489	417	enterobactin exporter EntS; Provisional	100.0
TIGR00895	398	2A0115 benzoate transport.	100.0
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	100.0
PRK15075	434	citrate-proton symporter; Provisional	100.0
PRK03699	394	putative transporter; Provisional	100.0
PRK03893	496	putative sialic acid transporter; Provisional	100.0
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	100.0
PRK05122	399	major facilitator superfamily transporter; Provisi	100.0
PLN00028	476	nitrate transmembrane transporter; Provisional	100.0
PRK10213	394	nepI ribonucleoside transporter; Reviewed	100.0
TIGR00893	399	2A0114 d-galactonate transporter.	100.0
PRK14995	495	methyl viologen resistance protein SmvA; Provision	100.0
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	100.0
PRK12382	392	putative transporter; Provisional	100.0
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	100.0
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	100.0
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	100.0
TIGR00892	455	2A0113 monocarboxylate transporter 1.	100.0
PRK10091	382	MFS transport protein AraJ; Provisional	100.0
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	100.0
PRK10504	471	putative transporter; Provisional	100.0
TIGR00900	365	2A0121 H+ Antiporter protein.	100.0
PRK09874	408	drug efflux system protein MdtG; Provisional	100.0
KOG0254	513	consensus Predicted transporter (major facilitator	100.0
PRK03633	381	putative MFS family transporter protein; Provision	100.0
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	100.0
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	100.0
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	100.0
TIGR00897	402	2A0118 polyol permease family. This family of prot	100.0
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	100.0
PRK11195	393	lysophospholipid transporter LplT; Provisional	100.0
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	100.0
PRK10133	438	L-fucose transporter; Provisional	100.0
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	100.0
PRK10473	392	multidrug efflux system protein MdtL; Provisional	100.0
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	100.0
PRK11043	401	putative transporter; Provisional	100.0
PRK15403	413	multidrug efflux system protein MdtM; Provisional	100.0
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	100.0
KOG2532	466	consensus Permease of the major facilitator superf	100.0
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	100.0
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	100.0
PRK11646	400	multidrug resistance protein MdtH; Provisional	100.0
PRK11010	491	ampG muropeptide transporter; Validated	100.0
PRK15011	393	sugar efflux transporter B; Provisional	100.0
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	100.0
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	100.0
PRK10054	395	putative transporter; Provisional	100.0
PRK11652	394	emrD multidrug resistance protein D; Provisional	100.0
KOG1330	493	consensus Sugar transporter/spinster transmembrane	100.0
KOG2533	495	consensus Permease of the major facilitator superf	100.0
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	100.0
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	100.0
PRK09528	420	lacY galactoside permease; Reviewed	100.0
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	100.0
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	100.0
PRK11902	402	ampG muropeptide transporter; Reviewed	100.0
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	100.0
TIGR00896	355	CynX cyanate transporter. This family of proteins	100.0
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.97
KOG2615	451	consensus Permease of the major facilitator superf	99.97
TIGR00901	356	2A0125 AmpG-related permease.	99.97
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.97
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.97
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.97
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.97
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.97
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.96
PTZ00207	591	hypothetical protein; Provisional	99.96
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.96
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.96
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.96
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.96
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.96
TIGR00805	633	oat sodium-independent organic anion transporter.	99.96
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.96
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.95
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.94
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.94
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.93
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.93
PRK09669	444	putative symporter YagG; Provisional	99.93
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.92
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.91
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.91
PRK10429	473	melibiose:sodium symporter; Provisional	99.9
KOG2563	480	consensus Permease of the major facilitator superf	99.89
PF13347	428	MFS_2: MFS/sugar transport protein	99.89
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.88
PRK09848	448	glucuronide transporter; Provisional	99.88
PRK11462	460	putative transporter; Provisional	99.87
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.87
COG2211	467	MelB Na+/melibiose symporter and related transport	99.85
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.84
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.81
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.8
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.73
PRK10642	490	proline/glycine betaine transporter; Provisional	99.73
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.72
KOG3626	735	consensus Organic anion transporter [Secondary met	99.71
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	99.68
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.66
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.64
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.63
PRK15011	393	sugar efflux transporter B; Provisional	99.62
PRK09528	420	lacY galactoside permease; Reviewed	99.61
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.6
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.59
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.59
PRK11663	434	regulatory protein UhpC; Provisional	99.58
PRK10054	395	putative transporter; Provisional	99.58
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.58
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.58
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.58
PRK03545	390	putative arabinose transporter; Provisional	99.58
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.57
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.57
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.57
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.57
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.57
PRK05122	399	major facilitator superfamily transporter; Provisi	99.55
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.55
PRK10504	471	putative transporter; Provisional	99.54
TIGR00895	398	2A0115 benzoate transport.	99.54
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.54
TIGR00891	405	2A0112 putative sialic acid transporter.	99.53
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.53
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.53
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.53
TIGR00893	399	2A0114 d-galactonate transporter.	99.52
PLN00028	476	nitrate transmembrane transporter; Provisional	99.52
PRK09874	408	drug efflux system protein MdtG; Provisional	99.52
PRK03699	394	putative transporter; Provisional	99.52
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.52
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.52
PRK12382	392	putative transporter; Provisional	99.51
PRK03893	496	putative sialic acid transporter; Provisional	99.51
TIGR00900	365	2A0121 H+ Antiporter protein.	99.51
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.51
PRK10489	417	enterobactin exporter EntS; Provisional	99.51
PRK10091	382	MFS transport protein AraJ; Provisional	99.51
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.5
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.5
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.49
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.49
PRK12307	426	putative sialic acid transporter; Provisional	99.49
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.49
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.48
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.48
PRK03633	381	putative MFS family transporter protein; Provision	99.48
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.47
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.47
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.46
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.46
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.45
PRK09705	393	cynX putative cyanate transporter; Provisional	99.45
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.45
PRK11043	401	putative transporter; Provisional	99.45
KOG3762	618	consensus Predicted transporter [General function	99.45
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.44
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.43
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.43
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.42
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.41
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.41
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.41
PRK11010	491	ampG muropeptide transporter; Validated	99.41
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.41
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.4
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.39
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.39
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.39
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.38
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.37
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.36
PRK09952	438	shikimate transporter; Provisional	99.36
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.36
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.35
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.33
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.31
KOG2615	451	consensus Permease of the major facilitator superf	99.29
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	99.28
KOG3098	461	consensus Uncharacterized conserved protein [Funct	99.28
PRK10133	438	L-fucose transporter; Provisional	99.28
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.27
PRK15075	434	citrate-proton symporter; Provisional	99.27
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.27
TIGR00898	505	2A0119 cation transport protein.	99.25
KOG0637	498	consensus Sucrose transporter and related proteins	99.25
PTZ00207	591	hypothetical protein; Provisional	99.25
PRK11902	402	ampG muropeptide transporter; Reviewed	99.24
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	99.24
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.23
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.22
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.22
TIGR00805	633	oat sodium-independent organic anion transporter.	99.21
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.21
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	99.2
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.2
KOG0569	485	consensus Permease of the major facilitator superf	99.19
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.18
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.17
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.17
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.16
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.15
TIGR00901	356	2A0125 AmpG-related permease.	99.15
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.14
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.13
KOG3810	433	consensus Micronutrient transporters (folate trans	99.13
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.13
PRK09848	448	glucuronide transporter; Provisional	99.12
KOG2532	466	consensus Permease of the major facilitator superf	99.11
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	99.08
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	99.04
PRK10429	473	melibiose:sodium symporter; Provisional	99.03
PF13347	428	MFS_2: MFS/sugar transport protein	99.03
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.03
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.01
COG0477	338	ProP Permeases of the major facilitator superfamil	98.99
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	98.99
KOG0254	513	consensus Predicted transporter (major facilitator	98.98
PRK09669	444	putative symporter YagG; Provisional	98.97
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.93
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	98.93
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.92
KOG2533	495	consensus Permease of the major facilitator superf	98.9
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.86
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.84
COG2211	467	MelB Na+/melibiose symporter and related transport	98.83
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.79
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	98.74
PRK11462	460	putative transporter; Provisional	98.73
KOG3762	618	consensus Predicted transporter [General function	98.73
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.7
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.66
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.58
PF12832	77	MFS_1_like: MFS_1 like family	98.56
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.55
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	98.49
COG3202	509	ATP/ADP translocase [Energy production and convers	98.49
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.47
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.38
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	98.37
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.33
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	98.31
KOG2325	488	consensus Predicted transporter/transmembrane prot	98.29
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	98.14
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	97.94
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.9
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.85
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	97.81
KOG2563	480	consensus Permease of the major facilitator superf	97.63
PF12832	77	MFS_1_like: MFS_1 like family	97.51
KOG3880	409	consensus Predicted small molecule transporter inv	97.45
COG0477	338	ProP Permeases of the major facilitator superfamil	97.22
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	97.2
PRK03612	521	spermidine synthase; Provisional	97.18
KOG3626	735	consensus Organic anion transporter [Secondary met	97.1
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.03
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	96.92
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	96.92
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	96.82
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	96.67
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	96.65
KOG3097	390	consensus Predicted membrane protein [Function unk	96.59
COG3202	509	ATP/ADP translocase [Energy production and convers	96.56
PRK03612	521	spermidine synthase; Provisional	96.47
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	96.14
KOG3098	461	consensus Uncharacterized conserved protein [Funct	96.02
KOG0637	498	consensus Sucrose transporter and related proteins	95.96
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	95.7
KOG2601	503	consensus Iron transporter [Inorganic ion transpor	95.52
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	94.7
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	93.49
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	92.11
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	88.4
KOG4830	412	consensus Predicted sugar transporter [Carbohydrat	87.11
KOG2765	416	consensus Predicted membrane protein [Function unk	84.49
KOG2601	503	consensus Iron transporter [Inorganic ion transpor	84.24
COG5336	116	Uncharacterized protein conserved in bacteria [Fun	81.2
KOG3880	409	consensus Predicted small molecule transporter inv	80.61
PF02990	521	EMP70: Endomembrane protein 70; InterPro: IPR00424	80.16

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=100.00  E-value=2.3e-46  Score=368.90  Aligned_cols=464  Identities=24%  Similarity=0.396  Sum_probs=356.6

Q ss_pred             HHHHhhcCCCchHHHHHHHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcch
Q 011416           11 DEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRR   90 (486)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r   90 (486)
                      |+..++.+.++++|.++++++++.+..+++...++.++|.+.++++++..+.+++.++++++.+++++++|+++||+|||
T Consensus       153 d~~l~~~~~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR  232 (742)
T TIGR01299       153 ELIIQECGHGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRK  232 (742)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence            33445566788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 011416           91 MGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAW  169 (486)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~  169 (486)
                      +++++++++.+++.++++++++++.++++|++.|++.|.. +...+++.|++|+++|++.+++...+..+|.++++.++.
T Consensus       233 ~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~  312 (742)
T TIGR01299       233 QCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAW  312 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999988 788899999999999999999999999999999998887


Q ss_pred             HHhcC-------------CCcHHHHHHhHHHHHHHHHHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCC--CCchh
Q 011416          170 IIMPR-------------LDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKL--PNGKL  234 (486)
Q Consensus       170 ~l~~~-------------~~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  234 (486)
                      .+...             .+||+.+++.+++.++.++..+++||+|+|+..+++.+++.+.++++...+.+..  +....
T Consensus       313 ~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~  392 (742)
T TIGR01299       313 AIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVF  392 (742)
T ss_pred             HHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHH
Confidence            66543             3689999998888888788888999999999999999999999988876654321  11100


Q ss_pred             hh-ccccCCCCCC--CCccch-hhcccCCCCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 011416          235 VA-RRSTLPTGER--APPELV-HLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELS  310 (486)
Q Consensus       235 ~~-~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (486)
                      .. +.+....+++  +..+.. ....+............+..++.+++++.++.++.+++.+++..+.+|++..|.|.+.
T Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~  472 (742)
T TIGR01299       393 SVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMI  472 (742)
T ss_pred             HHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00 0000000000  000000 0000000000000111223567888999999999999999999999999999999764


Q ss_pred             ccccc------------CCCC-------cc--------------------------------------------------
Q 011416          311 SLDTR------------CRSP-------LM--------------------------------------------------  321 (486)
Q Consensus       311 ~~~~~------------~~~~-------~~--------------------------------------------------  321 (486)
                      +....            .+..       +.                                                  
T Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~  552 (742)
T TIGR01299       473 KHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFI  552 (742)
T ss_pred             HHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchh
Confidence            32100            0000       00                                                  


Q ss_pred             ----------c----------------cCCC---------CCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHH
Q 011416          322 ----------F----------------SHHP---------QDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMF  366 (486)
Q Consensus       322 ----------~----------------~~~~---------~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~  366 (486)
                                +                ..+-         +.........+..++.+++.+++|+++||+|||+++.++.
T Consensus       553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~  632 (742)
T TIGR01299       553 DTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSM  632 (742)
T ss_pred             hhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence                      0                0000         0012345566777899999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011416          367 TLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH  446 (486)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g  446 (486)
                      ++.+++.+++.+..+....++..++.+++.++.++....+++|.+|++.|++++|+.+..+.+|++++|++.+.+.+. +
T Consensus       633 ~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~  711 (742)
T TIGR01299       633 VLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-T  711 (742)
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h
Confidence            999988888777665555566666777777788889999999999999999999999999999999999999988875 4


Q ss_pred             cchHHHHHHHHHHHHHHHHhcccccccCCC
Q 011416          447 QMTAVVLLVVVIVTSILSVMLIPFETKGQE  476 (486)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (486)
                      ...++++++++.++++++.+++ ||++++.
T Consensus       712 ~~~pf~i~a~~lll~~ll~~~L-PET~~~~  740 (742)
T TIGR01299       712 KAAPILFASAALACGGLLALKL-PDTRGQV  740 (742)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhC-CCCcccc
Confidence            5567777777777766666554 7887764

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=4.8e-43  Score=300.68  Aligned_cols=456  Identities=39%  Similarity=0.650  Sum_probs=385.7

Q ss_pred             HHHHHhhcCCCchHHHHHHHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 011416           10 VDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGR   89 (486)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~   89 (486)
                      .|+.....+++|++|........++....+.....+.+.|...+..|.+..|..++....+.|..+++-.+|.++|++||
T Consensus        63 v~ea~~aigfgrfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~gr  142 (528)
T KOG0253|consen   63 VDEAMNAIGFGRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGR  142 (528)
T ss_pred             ehhhhhhcCcccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhc
Confidence            45566677899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHhccCcchhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 011416           90 RMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAW  169 (486)
Q Consensus        90 r~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~  169 (486)
                      |+.+.+..+...+...+.+.++|+..+++.|.+.|+|.|+.|...++-.|..|..+|...+-.. ..+.+|.++...++.
T Consensus       143 r~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law  221 (528)
T KOG0253|consen  143 RKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGGLPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAW  221 (528)
T ss_pred             chhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCCccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999888888888999999999887777 999999999999999


Q ss_pred             HHhcCCCcHHHHHHhHHHHHHHHHHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCc
Q 011416          170 IIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPP  249 (486)
Q Consensus       170 ~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (486)
                      .+..++||||.....+.+..+.....+++||+|++...+++++++.+.++++...|+.+.+..........+.++++  .
T Consensus       222 ~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~--~  299 (528)
T KOG0253|consen  222 GVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEE--S  299 (528)
T ss_pred             HHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhh--h
Confidence            99999999999999998888888899999999999999999999999999999999888776544333222222111  1


Q ss_pred             cchhhcccCCCCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCcc------cc
Q 011416          250 ELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLM------FS  323 (486)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~  323 (486)
                      +.+       +...+..+.......++++++.++..++.+..++.+.+.||+...+...+.+....++.+..      +.
T Consensus       300 ~~~-------~~~~~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~  372 (528)
T KOG0253|consen  300 DLD-------DSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELET  372 (528)
T ss_pred             chh-------hhhhccccccccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHh
Confidence            100       01111112222367789999999999999999999999999999998887765443322211      11


Q ss_pred             ---CCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhh
Q 011416          324 ---HHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAF  400 (486)
Q Consensus       324 ---~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (486)
                         -..+...-..-.....+..+.|.++.++++||+|||+.+..++++++++.+.+....+........+...++..+.+
T Consensus       373 ~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~f  452 (528)
T KOG0253|consen  373 RANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAF  452 (528)
T ss_pred             hhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchh
Confidence               02233344556677889999999999999999999999999999999999988887777677778888889999999


Q ss_pred             hhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhcccccccCCCc
Q 011416          401 TVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQEL  477 (486)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (486)
                      .+.+.+..|.+|+..|+++.|....++.+|+++.|++.  +........+..+++++++++++...++..|+|+|..
T Consensus       453 qvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l  527 (528)
T KOG0253|consen  453 QVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL  527 (528)
T ss_pred             eEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence            99999999999999999999999999999999999998  4555566778889999999999999999999999864

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=100.00  E-value=1.8e-42  Score=337.79  Aligned_cols=432  Identities=22%  Similarity=0.296  Sum_probs=312.8

Q ss_pred             HhhcCCCchHHHHHHHHHHHHHHHHhhHhhhhchhchhhhhc-----CCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 011416           14 LTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEW-----NLSSTEESLITTSVFAGLVVGAYAWGLVADNYG   88 (486)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G   88 (486)
                      .++.+.++++++++.++.++.+..+++...++...|.+.+++     +.+..+.+++.+.+.+++.++++++|+++||+|
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~G   84 (502)
T TIGR00887         5 ADTAPFGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLG   84 (502)
T ss_pred             hhccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            456678889999999999999999999999999999887653     345667899999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHhhhhhhcCCC------HHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHH
Q 011416           89 RRMGFLGEALVTAGAGLLSSFSPN------YITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGS  161 (486)
Q Consensus        89 ~r~~~~~~~~~~~~~~~~~~~a~~------~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~  161 (486)
                      ||+++.++.++..++.++++++++      ++.++++|+++|++.|.. +....++.|++|+++|++++++.+....+|.
T Consensus        85 rr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~  164 (502)
T TIGR00887        85 RKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGI  164 (502)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHH
Confidence            999999999999999999888876      789999999999999998 7788999999999999999999999999999


Q ss_pred             HHHHHHHHHHhc-----------------------CCCcHHHHHHhHHHHHHHHHHhhccCCCchhhhhcCChHH-HHHH
Q 011416          162 VSEAIGAWIIMP-----------------------RLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAE-AHRA  217 (486)
Q Consensus       162 ~i~~~l~~~l~~-----------------------~~~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~-~~~~  217 (486)
                      ++++.++..+..                       ..+||+.|.+.++++++..+..+++||+|+|+..+++.++ +++.
T Consensus       165 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~  244 (502)
T TIGR00887       165 LAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASD  244 (502)
T ss_pred             HHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHH
Confidence            999988876532                       2479999999888888887888899999999887776643 4444


Q ss_pred             HHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCCCCcccCCCchhhhHhhhch----hhHHHHHHHHHHHH
Q 011416          218 LEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSS----KLARTTILLWLLLF  293 (486)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~  293 (486)
                      +.+....+..+ +.           ++.      ++ .+   ++++    ....++++++++    +..+..+.....++
T Consensus       245 ~~~~~~~~~~~-~~-----------~~~------~~-~~---~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  298 (502)
T TIGR00887       245 MSAVLQVKIEA-EP-----------DEV------EK-AS---TAVE----VPKASWSDFFTHFFKWRHGKHLLGTAGSWF  298 (502)
T ss_pred             HHHHhcccccc-Cc-----------ccc------cc-hh---cccc----chhhhHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            44333211100 00           000      00 00   0000    001245666543    22233333344455


Q ss_pred             HHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchh------------HHHHHHHHhhHHHHHHHHHHHHHHhchhHH
Q 011416          294 GNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANL------------YIDEFITSLAEIPGLLLAAILVDTAGRKLS  361 (486)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~  361 (486)
                      ...+.+|+...+.|.+.+           +.|++....            ........++.+++.+++++++||+|||+.
T Consensus       299 ~~~~~~y~~~~~~p~i~~-----------~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~  367 (502)
T TIGR00887       299 LLDIAFYGVNLNQKVILS-----------AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPI  367 (502)
T ss_pred             HHHHHHHccccccHHHHH-----------HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhH
Confidence            555667776666665542           223332211            112334455677788999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhc----hhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHH
Q 011416          362 ITIMFTLSCLFLLPLVTYQ----SNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLV  437 (486)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i  437 (486)
                      +.++..+++++++++....    .........+...++..+..+..+.+..|.+|++.|+++.|+.+.++.++++++|.+
T Consensus       368 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~  447 (502)
T TIGR00887       368 QLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFG  447 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHH
Confidence            9888877777665554421    111111111222222344566778888999999999999999999999999999999


Q ss_pred             HHHHHHhh----------ccchHHHHHHHHHHHHHHHHhcccccccCCCccccccc
Q 011416          438 AVALVANC----------HQMTAVVLLVVVIVTSILSVMLIPFETKGQELSDTVDF  483 (486)
Q Consensus       438 ~g~l~~~~----------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  483 (486)
                      .+.+.+..          +....+++++++++++.+.. ++.||+++++.+|.++|
T Consensus       448 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~-~~lpEt~~~~leei~~~  502 (502)
T TIGR00887       448 FLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT-LLIPETKGKSLEELSGE  502 (502)
T ss_pred             hhhhhccccccccccccccchHHHHHHHHHHHHHHHHh-eEeccCCCCCHHhhhCC
Confidence            99998843          33456788888777776654 56689999988776543

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.3e-43  Score=311.04  Aligned_cols=406  Identities=18%  Similarity=0.172  Sum_probs=327.9

Q ss_pred             HhhcCCCchHHHHHHHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHH
Q 011416           14 LTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGF   93 (486)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~   93 (486)
                      +.++..+++|+.+++.+++++...++.+.+++.+.|.+.++.++|.+|+|++.|.++++|.++..+.|.++||.++|+.+
T Consensus        18 ~~~~~y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm   97 (448)
T COG2271          18 EIDKTYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFM   97 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceee
Confidence            33445778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHH--HH
Q 011416           94 LGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGA--WI  170 (486)
Q Consensus        94 ~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~--~~  170 (486)
                      ..++++.++..++++++++.+.+.+..++.|..+|.. |++...++.|++++|||+..++++++.++|..+.|++.  +.
T Consensus        98 ~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~  177 (448)
T COG2271          98 AFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAF  177 (448)
T ss_pred             hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHH
Confidence            9999999999999999999999999999999999999 99999999999999999999999999999999999999  88


Q ss_pred             HhcCCCcHHHHHHhHHHHHHH-HHHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCc
Q 011416          171 IMPRLDWRWLLGLSSIPSFIL-LAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPP  249 (486)
Q Consensus       171 l~~~~~w~~~f~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (486)
                      +..+.+||..|++.++++++. ++.++..+++|+..--+ ..++.+++..+..+                    +     
T Consensus       178 ~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP-~ie~~~~d~~e~~~--------------------~-----  231 (448)
T COG2271         178 FAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLP-PIEEYRGDPLEIYE--------------------E-----  231 (448)
T ss_pred             HHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCC-CHHHhhcCchhhhh--------------------h-----
Confidence            888899999999999998886 55566678887532111 11111100000000                    0     


Q ss_pred             cchhhcccCCCCCccc-CCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCC
Q 011416          250 ELVHLLSSNGGNKTTE-GKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQD  328 (486)
Q Consensus       250 ~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (486)
                                 +++.+ ......-.+.++++   +.++.+++......+.-|++..|.|.+.          .+.+|++.
T Consensus       232 -----------~~~~~~ls~~~i~~~YVL~N---k~iW~la~a~vfvYivR~gi~dW~p~YL----------~e~k~~s~  287 (448)
T COG2271         232 -----------EKENEGLTAWQIFVKYVLKN---KLIWLLALANVFVYVVRYGINDWGPLYL----------SEVKGFSL  287 (448)
T ss_pred             -----------hccCCCccHHHHHHHHHHcC---hHHHHHHHHHHHHHHHHHHHhhhHHHHH----------HHhcCCCH
Confidence                       00000 00000122233333   4466667777777788888888888766          45779999


Q ss_pred             chhHHHHHHHHhhHHHHHHHHHHHHHHh--chhHHHHH-HHHHHHHHHHHHhhhc--hhHHHHHHHHHHHHhhhhhhhhH
Q 011416          329 ANLYIDEFITSLAEIPGLLLAAILVDTA--GRKLSITI-MFTLSCLFLLPLVTYQ--SNILTTGLLFGARMCVMGAFTVS  403 (486)
Q Consensus       329 ~~~~~~~~~~~i~~~~~~~~~g~l~dr~--g~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  403 (486)
                      .++....+.+-+++++|.+++|+++||+  |||....+ ..+...++.+.+...+  +.+...+++++.|+...+..-..
T Consensus       288 ~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLi  367 (448)
T COG2271         288 VKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLI  367 (448)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHH
Confidence            9999999999999999999999999996  66665544 4444444444444433  34777788888888888888778


Q ss_pred             hhhccccccccchhhHhHHHHHHHHH-HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhccc
Q 011416          404 LIYAAEIYPTSVRSTGAGAANAMGRI-GGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIP  469 (486)
Q Consensus       404 ~~~~~~~~~~~~~~~~~g~~~~~~~~-g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  469 (486)
                      -....|..|++..|++.|+...++++ |...+....|++.|.+||...|.++.+.++++.++.....
T Consensus       368 Gl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~  434 (448)
T COG2271         368 GLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVW  434 (448)
T ss_pred             HHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHH
Confidence            88899999999999999999999998 9999999999999999999999988888887776666554

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=100.00  E-value=5.8e-40  Score=313.19  Aligned_cols=384  Identities=22%  Similarity=0.300  Sum_probs=301.1

Q ss_pred             CCchHHHHHHHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHH
Q 011416           19 FGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEAL   98 (486)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~   98 (486)
                      ..+++|.++.+.++..+.++++....++..|.+.+++|+++.+.|++.+++.++..+++++.|+++||+|||+++..+.+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~   88 (406)
T PRK11551          9 SSSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVA   88 (406)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHH
Confidence            34688889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhhcCCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 011416           99 VTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDW  177 (486)
Q Consensus        99 ~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w  177 (486)
                      +.+++.+++.+++|++.+++.|++.|++.+.. +...+++.|++|+++|++++++.+.+..+|..+++.++..+.+..+|
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  168 (406)
T PRK11551         89 LFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAW  168 (406)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCH
Confidence            99999999999999999999999999999887 77778999999999999999999999999999999999988888999


Q ss_pred             HHHHHHhHHHHHHHH-HHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcc
Q 011416          178 RWLLGLSSIPSFILL-AFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLS  256 (486)
Q Consensus       178 ~~~f~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (486)
                      |..|++.+++.++.. +...++||+|++...+++.++.++                                        
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----------------------------------------  208 (406)
T PRK11551        169 RHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAP----------------------------------------  208 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhhh----------------------------------------
Confidence            999998877665543 345567887654322111110000                                        


Q ss_pred             cCCCCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHH
Q 011416          257 SNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEF  336 (486)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (486)
                                     ..+.+++++..+.....+...+......+....+.|.+.           ++.|.++.+.+....
T Consensus       209 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-----------~~~g~s~~~~~~~~~  262 (406)
T PRK11551        209 ---------------VLRALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLL-----------VGQGLSRSQAGLVQI  262 (406)
T ss_pred             ---------------hHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HhCCCChhhhhHHHH
Confidence                           011111111112222233333333344455555566544           345788888999999


Q ss_pred             HHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccch
Q 011416          337 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVR  416 (486)
Q Consensus       337 ~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (486)
                      ...++.++++++.|++.||+++|+.+..+.+..+++++.+...++.+...+..++.+++..+..+..+++..|.+|++.|
T Consensus       263 ~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~  342 (406)
T PRK11551        263 AFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVR  342 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhh
Confidence            99999999999999999999999988877776666666655555555555666677777777888889999999999999


Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHHHhhccch-HHHHHHHHHHHHHHHHhcc
Q 011416          417 STGAGAANAMGRIGGMVCPLVAVALVANCHQMT-AVVLLVVVIVTSILSVMLI  468 (486)
Q Consensus       417 ~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~-~~~~~~~~~~~~~~~~~~~  468 (486)
                      +++.|+.+....+|..++|.+.|.+.++.+.+. .+.....+.+++.+..+..
T Consensus       343 g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (406)
T PRK11551        343 GTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLL  395 (406)
T ss_pred             hhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998765443 3444444444444444444

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=100.00  E-value=2.1e-40  Score=323.31  Aligned_cols=426  Identities=19%  Similarity=0.219  Sum_probs=304.0

Q ss_pred             CCchHHHHHHHHHHHHHHHHhhHhhhhchhchhhhhc--------CCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcch
Q 011416           19 FGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEW--------NLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRR   90 (486)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r   90 (486)
                      ..+++.+...+..++.+..+++...+++..|.+++++        +++..+.+++.+++.++..++++++|+++||+|||
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr   85 (479)
T PRK10077          6 NSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRR   85 (479)
T ss_pred             cchHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence            3456677778888889999999999999999888877        88899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhcC---------CC---HHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHH
Q 011416           91 MGFLGEALVTAGAGLLSSFS---------PN---YITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFW  157 (486)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~a---------~~---~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~  157 (486)
                      +++.++.++.+++.++++++         ++   ++.+++.|+++|++.|.. +...+++.|++|+++|++++++.+.+.
T Consensus        86 ~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~  165 (479)
T PRK10077         86 DSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAI  165 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHH
Confidence            99999999999988877763         22   567889999999999998 788899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHh--------cCCCcHHHHHHhHHHHHHHHHHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCC
Q 011416          158 TIGSVSEAIGAWIIM--------PRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKL  229 (486)
Q Consensus       158 ~~G~~i~~~l~~~l~--------~~~~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (486)
                      .+|.++++.++..+.        +..|||++|++.+++.++..+..+++||+|+++..+++.+++++..++.......  
T Consensus       166 ~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~--  243 (479)
T PRK10077        166 IFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLA--  243 (479)
T ss_pred             HHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhH--
Confidence            999999988776553        3579999999988888777666788999998876666655554433332111000  


Q ss_pred             CCchhhhccccCCCCCCCCccchhhcccCCCCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011416          230 PNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISEL  309 (486)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (486)
                       .... .+             ......       .+..    ..+..+...............+.....++...++.|.+
T Consensus       244 -~~~~-~~-------------~~~~~~-------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i  297 (479)
T PRK10077        244 -TQAL-QE-------------IKHSLD-------HGRK----TGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEI  297 (479)
T ss_pred             -HHHH-HH-------------HHHHHH-------Hhhh----hhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHH
Confidence             0000 00             000000       0000    00001100000000001111111222233334445544


Q ss_pred             ccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhh--chh--HHH
Q 011416          310 SSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY--QSN--ILT  385 (486)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~  385 (486)
                      .           +..|.+...........++..+++.+++++++||+|||+.+..+.++.+++.+.+...  .+.  ...
T Consensus       298 ~-----------~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~  366 (479)
T PRK10077        298 F-----------KTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVA  366 (479)
T ss_pred             H-----------HHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHH
Confidence            3           2346666666777778888999999999999999999999999998888877666432  111  122


Q ss_pred             HHHHHHHHHhhhh-hhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHH------HhhccchHHHHHHHHH
Q 011416          386 TGLLFGARMCVMG-AFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALV------ANCHQMTAVVLLVVVI  458 (486)
Q Consensus       386 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~------~~~g~~~~~~~~~~~~  458 (486)
                      ....++.+++.+. ..|..+.++.|.+|++.|+++.|+.+..+++++++++.+.+.+.      +..++...++++++++
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  446 (479)
T PRK10077        367 LLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMG  446 (479)
T ss_pred             HHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHH
Confidence            2233333333332 34678899999999999999999999999999999977776544      5677778888888888


Q ss_pred             HHHHHHHhcccccccCCCccccccc
Q 011416          459 VTSILSVMLIPFETKGQELSDTVDF  483 (486)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~  483 (486)
                      ++++++.+.+.+|+|+++.+|.+++
T Consensus       447 ~~~~~~~~~~~~e~~~~~~~~~~~~  471 (479)
T PRK10077        447 VLAALFMWKFVPETKGKTLEEMEAL  471 (479)
T ss_pred             HHHHHHHHhccccCCCCCHHHHHHH
Confidence            8888888878888888877765443

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.5e-39  Score=291.72  Aligned_cols=377  Identities=17%  Similarity=0.160  Sum_probs=301.6

Q ss_pred             CchHHHHHHHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHH
Q 011416           20 GKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALV   99 (486)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~   99 (486)
                      ++..+..++.+.++.|...........++|++.+|+|+|..+.|++.|.|.+++.++.|+...+.||+.||++++..+.+
T Consensus         8 ~~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~l   87 (394)
T COG2814           8 RKPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLAL   87 (394)
T ss_pred             cccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH
Confidence            34556677778888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhcCCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcH
Q 011416          100 TAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWR  178 (486)
Q Consensus       100 ~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~  178 (486)
                      +.++.+++++++||+.++++|++.|+..|.+ ....+...+..||++|++++++...+..++.++|.+++.++.+.+|||
T Consensus        88 Fi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR  167 (394)
T COG2814          88 FIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWR  167 (394)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHH
Confidence            9999999999999999999999999999999 777889999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHHHH-HHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhccc
Q 011416          179 WLLGLSSIPSFILL-AFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSS  257 (486)
Q Consensus       179 ~~f~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (486)
                      ..|++.+.++++.. ..+..+|  |+.. .++++.+.+                                          
T Consensus       168 ~~F~~ia~l~ll~~~~~~~~lP--~~~~-~~~~~~~~~------------------------------------------  202 (394)
T COG2814         168 ATFLAIAVLALLALLLLWKLLP--PSEI-SGSLPGPLR------------------------------------------  202 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCC--CccC-CCCCCcchh------------------------------------------
Confidence            99999999998874 4566777  2110 001101100                                          


Q ss_pred             CCCCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHH
Q 011416          258 NGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFI  337 (486)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (486)
                                    ...++++++..+..+....+.+   ...|....|...+.          .+..|++....++....
T Consensus       203 --------------~~~~~l~~p~v~~~l~~t~l~~---~g~F~~ftYi~P~L----------~~v~g~s~~~vs~~Ll~  255 (394)
T COG2814         203 --------------TLLRLLRRPGVLLGLLATFLFM---TGHFALYTYIRPFL----------ESVAGFSVSAVSLVLLA  255 (394)
T ss_pred             --------------HHHHHhcCchHHHHHHHHHHHH---cchhhhHHhHHHHH----------HHccCCCHhHHHHHHHH
Confidence                          1222233333333333333322   22222222322222          24458999999999999


Q ss_pred             HHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhh-hchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccch
Q 011416          338 TSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT-YQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVR  416 (486)
Q Consensus       338 ~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (486)
                      ++++.++|..++|++.|| +.|+.+.....+.++.++.+.+ ..+.+......++.++..............+.. ++.+
T Consensus       256 ~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p~~~  333 (394)
T COG2814         256 FGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLARLA-PDAA  333 (394)
T ss_pred             HHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcccC-CCch
Confidence            999999999999999999 8888887777777777766665 445555556666667766666666677777744 4679


Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhcccc
Q 011416          417 STGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPF  470 (486)
Q Consensus       417 ~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  470 (486)
                      +.+.+++....|+|..+|..++|.+.|+.|+....+..+.+.+++.++.+...+
T Consensus       334 ~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~  387 (394)
T COG2814         334 DLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSAR  387 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999998888888888888877766553

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=100.00  E-value=4.5e-41  Score=325.17  Aligned_cols=414  Identities=13%  Similarity=0.072  Sum_probs=297.4

Q ss_pred             CccccHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhh
Q 011416            5 GHVYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVA   84 (486)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~   84 (486)
                      +|..+.++++.++.+.|..+.++..+++.+++.+.++..+++..|.+.+|+|++..+.|++.+++.+++.+++++.|+++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~   88 (467)
T PRK09556          9 KPTLDLPLEVQRKMWFKPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYA   88 (467)
T ss_pred             CCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHh
Confidence            44445555555556677788889999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcchHHHHHHHHHHHHhhhhhhc-----CCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHH
Q 011416           85 DNYGRRMGFLGEALVTAGAGLLSSF-----SPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWT  158 (486)
Q Consensus        85 dr~G~r~~~~~~~~~~~~~~~~~~~-----a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~  158 (486)
                      ||+|||+++..+.++++++.++.++     ++|++.+++.|+++|++.+.. +...+++.||+|+++||+++|+...+.+
T Consensus        89 Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~  168 (467)
T PRK09556         89 DGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHN  168 (467)
T ss_pred             hccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccc
Confidence            9999999998888887777665554     689999999999999999888 7777899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCC---CcHHHHHHhHHHHHHHHHH-hhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchh
Q 011416          159 IGSVSEAIGAWIIMPRL---DWRWLLGLSSIPSFILLAF-LGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKL  234 (486)
Q Consensus       159 ~G~~i~~~l~~~l~~~~---~w~~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (486)
                      +|.++++++...+.+..   +||..|.+.+++.++..+. +++.+++|+.....   ++ ++..      +... .    
T Consensus       169 lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~---~~-~~~~------~~~~-~----  233 (467)
T PRK09556        169 LGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWG---KA-EEIF------GEPI-S----  233 (467)
T ss_pred             hhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCC---Ch-hhcc------cCcc-c----
Confidence            99999999887766543   6999998888877765443 44456665421100   00 0000      0000 0    


Q ss_pred             hhccccCCCCCCCCccchhhcccCCCCCcccCCCchhh-hHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 011416          235 VARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSL-FLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLD  313 (486)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (486)
                              ++++              ..+.++...... .+..++++   .++...+..++....+++...+.|.+.   
T Consensus       234 --------~~~~--------------~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~p~yl---  285 (467)
T PRK09556        234 --------EEDK--------------ETESTDMTKWQIFVEYVLKNP---VIWLLCFANIFLYIVRIGIDNWSPVYA---  285 (467)
T ss_pred             --------hhhh--------------ccccccCcHHHHHHHHHHcCh---HHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence                    0000              000000000001 11133332   344444455555555566666777554   


Q ss_pred             ccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHH--hhhchhHHHHHHHHH
Q 011416          314 TRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPL--VTYQSNILTTGLLFG  391 (486)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  391 (486)
                             .+.+|.+..+++.......++.+++.+++|+++||++||+.......+..++...+  ....+.+...+..++
T Consensus       286 -------~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (467)
T PRK09556        286 -------FQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFA  358 (467)
T ss_pred             -------HHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence                   23467888899999888999999999999999999998887665444433332222  222334344445555


Q ss_pred             HHHhhhhhhhhHhhhccccccccchhhHhHHHHHHHHH-HHHHHHHHHHHHHH------------hhccchHHHHHHHHH
Q 011416          392 ARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRI-GGMVCPLVAVALVA------------NCHQMTAVVLLVVVI  458 (486)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-g~~~~~~i~g~l~~------------~~g~~~~~~~~~~~~  458 (486)
                      .|++..+..........|.+|++.+|++.|+.+..+++ |.+++|.+.|.+.|            ..+|...|.+..++.
T Consensus       359 ~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~  438 (467)
T PRK09556        359 LGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAA  438 (467)
T ss_pred             HHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHH
Confidence            55444333333345667999999999999999999997 77999999999999            567888888887777


Q ss_pred             HHHHHHHhcc
Q 011416          459 VTSILSVMLI  468 (486)
Q Consensus       459 ~~~~~~~~~~  468 (486)
                      +++.+..+.+
T Consensus       439 ~~~~~~~~~~  448 (467)
T PRK09556        439 IGCICLMAIV  448 (467)
T ss_pred             HHHHHHHHHH
Confidence            7776665544

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=100.00  E-value=5.7e-40  Score=311.77  Aligned_cols=397  Identities=17%  Similarity=0.186  Sum_probs=286.1

Q ss_pred             CchHHHHHHHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHH
Q 011416           20 GKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALV   99 (486)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~   99 (486)
                      +|.+|+.+..+++.++++++|+.+++...|.+.+|+|++..+.|++.+++.+++.+++++.|+++||+|||+++..++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~   82 (412)
T TIGR02332         3 KKLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVL   82 (412)
T ss_pred             eeehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhcCCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc-----
Q 011416          100 TAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMP-----  173 (486)
Q Consensus       100 ~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~-----  173 (486)
                      .+++.+++++++|++.+++.|+++|++.+.. +....++.|++|+++|++++++++.+.++|.++++++++.+.+     
T Consensus        83 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~  162 (412)
T TIGR02332        83 WGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLM  162 (412)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            9999999999999999999999999999988 6677889999999999999999999999999999999988763     


Q ss_pred             -CCCcHHHHHHhHHHHHHH-HHHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccc
Q 011416          174 -RLDWRWLLGLSSIPSFIL-LAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPEL  251 (486)
Q Consensus       174 -~~~w~~~f~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (486)
                       ..|||+.|++.++++++. .+.++++||+|+...  .-.+++++..++..+.+..+.+             +   +.  
T Consensus       163 ~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~--~l~~~~~~~~~~~~~~~~~~~~-------------~---~~--  222 (412)
T TIGR02332       163 ALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAK--WLDEEDKKALKEMIDNDQLTLE-------------Q---PE--  222 (412)
T ss_pred             CccchhHHHHHHHHHHHHHHHHHhhccCCCcccCC--CCCHHHHHHHHHHHHhcccccc-------------c---cc--
Confidence             469999999988887765 445667788875210  0011111111111000000000             0   00  


Q ss_pred             hhhcccCCCCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchh
Q 011416          252 VHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANL  331 (486)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (486)
                              ....++.......++.++++    .++.....+++....++....+.|.+.+..         ..+.+..++
T Consensus       223 --------~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~---------~~~~s~~~~  281 (412)
T TIGR02332       223 --------GAFAHAAMPQRSMLREIFTP----AIMLYTLAYFCLTNTLSAINIWTPQILQSF---------NQGSSNIMI  281 (412)
T ss_pred             --------cccccccccHHHHHHHhcCh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------CCCCcHHHh
Confidence                    00000000001133444432    334445555566666777777777766210         125677788


Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHhchhHH-HHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhhcccc
Q 011416          332 YIDEFITSLAEIPGLLLAAILVDTAGRKLS-ITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEI  410 (486)
Q Consensus       332 ~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (486)
                      +.......++.+++.++.|+++||+++|+. .....++..+.+++.....+.........+.+++.....+..+....|.
T Consensus       282 ~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  361 (412)
T TIGR02332       282 GLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQS  361 (412)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccc
Confidence            888999999999999999999999987664 3334334444332222222222222222222333333334455666788


Q ss_pred             ccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHH
Q 011416          411 YPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH-QMTAVVLLVVV  457 (486)
Q Consensus       411 ~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g-~~~~~~~~~~~  457 (486)
                      +|++.|++++|+.+...++|++++|.+.|.+.|..| |...+...+++
T Consensus       362 ~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~  409 (412)
T TIGR02332       362 ISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL  409 (412)
T ss_pred             cchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence            999999999999999999999999999999999876 66666655543

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=100.00  E-value=3.2e-39  Score=313.74  Aligned_cols=396  Identities=17%  Similarity=0.167  Sum_probs=283.2

Q ss_pred             HHHHHHHHHHHHHHHhhHhhhhchhchhhhhcCCCcch-hHH-----HHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHH
Q 011416           24 CFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTE-ESL-----ITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEA   97 (486)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~g~-----~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~   97 (486)
                      +..+...+++++++++|...++...|.+.++++.+.++ .++     +.++.++++.++++++|+++||+|||+++.+++
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~   94 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI   94 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            44667778899999999999999999999999754432 222     257788999999999999999999999999999


Q ss_pred             HHHHHhhhhhhcCCCHHH--------HHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 011416           98 LVTAGAGLLSSFSPNYIT--------LITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGA  168 (486)
Q Consensus        98 ~~~~~~~~~~~~a~~~~~--------l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~  168 (486)
                      ++++++++++++++|+++        +++.|+++|++.|.. +...+++.|++|+++||++.++...+..+|..+++.+.
T Consensus        95 ~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~  174 (490)
T PRK10642         95 VIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVV  174 (490)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999875        889999999999988 77788999999999999999999999888988888766


Q ss_pred             HHHh--------cCCCcHHHHHHhHHHHHHHHHHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhcccc
Q 011416          169 WIIM--------PRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRST  240 (486)
Q Consensus       169 ~~l~--------~~~~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (486)
                      ..+.        ..+|||+.|++.+++.++.+++...+||+|++...+++.++..          .+..           
T Consensus       175 ~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~----------~~~~-----------  233 (490)
T PRK10642        175 VLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGD----------REGL-----------  233 (490)
T ss_pred             HHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhc----------cccc-----------
Confidence            5443        3689999999987766666666677899887642211110000          0000           


Q ss_pred             CCCCCCCCccchhhcccCCCCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCc
Q 011416          241 LPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPL  320 (486)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (486)
                                           . +   ....++++++++ .++.........+.....+|....+.|.+.+         
T Consensus       234 ---------------------~-~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~---------  278 (490)
T PRK10642        234 ---------------------Q-D---GPKVSFKEIATK-HWRSLLTCIGLVIATNVTYYMLLTYMPSYLS---------  278 (490)
T ss_pred             ---------------------c-c---cccCCHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence                                 0 0   000134455543 2233333333344455667777777776542         


Q ss_pred             cccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH-Hhh--hchhHHHHHHHHHHHHhhh
Q 011416          321 MFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLP-LVT--YQSNILTTGLLFGARMCVM  397 (486)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~  397 (486)
                       +..|.+............++.+++.++.|+++||+|||+.+..+.++..+..+. +..  ..+........++.+++.+
T Consensus       279 -~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  357 (490)
T PRK10642        279 -HNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILN  357 (490)
T ss_pred             -HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence             234677777777777778888999999999999999999887776543332222 221  2233334444455556555


Q ss_pred             hhhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHHHHhcccccccCCC
Q 011416          398 GAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH-QMTAVVLLVVVIVTSILSVMLIPFETKGQE  476 (486)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (486)
                      ...+....+..|.+|++.|+++.|+.+....+++.++|.+.+++.+..+ +..++++..+..+++.+..++ .||++++.
T Consensus       358 ~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~-~pes~~~~  436 (490)
T PRK10642        358 CFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVT-MKETANRP  436 (490)
T ss_pred             HHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH-hccccCCC
Confidence            5666677778899999999999998777777888999999999988765 454555555555555554444 36766544


Q ss_pred             c
Q 011416          477 L  477 (486)
Q Consensus       477 ~  477 (486)
                      .
T Consensus       437 ~  437 (490)
T PRK10642        437 L  437 (490)
T ss_pred             C
Confidence            3

>PRK11663 regulatory protein UhpC; Provisional

Probab=100.00  E-value=8.3e-40  Score=313.30  Aligned_cols=404  Identities=15%  Similarity=0.130  Sum_probs=289.1

Q ss_pred             CCchHHHHHHHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHH
Q 011416           19 FGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEAL   98 (486)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~   98 (486)
                      .+++++.++....+.++..++++..++...|.+.+++|+|..+.|++.+.+.+++.+++++.|+++||+|||+++.++.+
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~   96 (434)
T PRK11663         17 YRYWRRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLI   96 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHH
Confidence            44556677777888888889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhhcCCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 011416           99 VTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDW  177 (486)
Q Consensus        99 ~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w  177 (486)
                      +.+++.+++++++|++.+++.|++.|++.|.. +...+++.|++|+++|++++++.+.+.++|..+++.+++.+.+.+||
T Consensus        97 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw  176 (434)
T PRK11663         97 ATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGW  176 (434)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH
Confidence            99999999999999999999999999999877 77778999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhHHHHHHH-HHHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcc
Q 011416          178 RWLLGLSSIPSFIL-LAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLS  256 (486)
Q Consensus       178 ~~~f~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (486)
                      |+.|++.+++.++. ++..++++|+|++...+...+..++.                     +   +..           
T Consensus       177 ~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~---------------------~---~~~-----------  221 (434)
T PRK11663        177 RYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDA---------------------L---ELA-----------  221 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccc---------------------c---ccc-----------
Confidence            99999988876654 34455677766432101000000000                     0   000           


Q ss_pred             cCCCCCcccCCCchh-hhH-hhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHH
Q 011416          257 SNGGNKTTEGKSGLS-LFL-MLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYID  334 (486)
Q Consensus       257 ~~~~~~~~~~~~~~~-~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (486)
                          ++.++.+.+.. .++ ..++++   .++......+.....++.+..+.|.+.          .++.|.+..+++..
T Consensus       222 ----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~~l----------~~~~g~s~~~a~~~  284 (434)
T PRK11663        222 ----QQQEGAGLSRKEILTKYVLLNP---YIWLLSFSYVLVYVVRAAINDWGNLYM----------SETLGVDLVTANSA  284 (434)
T ss_pred             ----hhccccCCChhhhHHHHHhcCh---HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HhccCCCHHHHHHH
Confidence                00000000000 111 122222   233333334444445555555666544          13457888889999


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHh--chh-HHHHHHH---HHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhhcc
Q 011416          335 EFITSLAEIPGLLLAAILVDTA--GRK-LSITIMF---TLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAA  408 (486)
Q Consensus       335 ~~~~~i~~~~~~~~~g~l~dr~--g~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (486)
                      .....+++++++++.|+++||+  ++| .......   ....+....+. ..+........+..+++..+..........
T Consensus       285 ~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  363 (434)
T PRK11663        285 VSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMP-FASYVMQAACFFTIGFFVFGPQMLIGMAAA  363 (434)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcc-cccHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            9999999999999999999998  333 3222211   11111111111 222222222233333333323333455678


Q ss_pred             ccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhcccccccCC
Q 011416          409 EIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQ  475 (486)
Q Consensus       409 ~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (486)
                      |..|++.++++.|+.+...++|++++|.+.|++.|..|+...+...+++.+++++..+...++++++
T Consensus       364 ~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~  430 (434)
T PRK11663        364 ECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQAPR  430 (434)
T ss_pred             hcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence            9999999999999999999999999999999999999999999888888888777666655444443

>TIGR00898 2A0119 cation transport protein

Probab=100.00  E-value=9e-40  Score=320.55  Aligned_cols=388  Identities=32%  Similarity=0.583  Sum_probs=303.0

Q ss_pred             chhchhhhhcCCC---cchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHH
Q 011416           46 FVGPTVKSEWNLS---STEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCL  122 (486)
Q Consensus        46 ~~~~~~~~~~~~s---~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r~l  122 (486)
                      +..|.+.+|+|++   ..+.+++.+++.++..+++++.|+++||+|||++++++.++.+++.++.++++|++.+++.|++
T Consensus       110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l  189 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL  189 (505)
T ss_pred             cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            5678899999999   8899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHhHHHHHHHHHHhhccCCC
Q 011416          123 VGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPES  201 (486)
Q Consensus       123 ~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~e~  201 (486)
                      .|++.+.. +...+++.|++|+++|+++.++...+..+|.++++.++..+.   +||+.|++.+++.++..+..+++||+
T Consensus       190 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~---~wr~~~~~~~i~~~~~~~~~~~~~es  266 (505)
T TIGR00898       190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP---DWRWLQLAVSLPTFLFFLLSWFVPES  266 (505)
T ss_pred             HHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            99999997 788899999999999999999999999999999999987764   39999999998888877777889999


Q ss_pred             chhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCCCCcccCCCchhhhHhhhchhh
Q 011416          202 PRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKL  281 (486)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  281 (486)
                      |+|...+++.+++.+..++..+.++.+.+.+......+                     ++..+ +.+...++++++++.
T Consensus       267 p~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~-~~~~~~~~~l~~~~~  324 (505)
T TIGR00898       267 PRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLE---------------------KDLSS-SKKQYSFLDLFRTPN  324 (505)
T ss_pred             hHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhh---------------------hhhhh-ccCCCcHHHHhCChH
Confidence            99998888888888887777665543222111000000                     00000 001124566665544


Q ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhH
Q 011416          282 A-RTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKL  360 (486)
Q Consensus       282 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~  360 (486)
                      . +..+..+..++.....+++...+.+.+.               .+   ........++..+++.++.+++.||+|||+
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~---~~~~~~~~~~~~i~~~~~~~~l~dr~grr~  386 (505)
T TIGR00898       325 LRKTTLCLMMLWFTTAFSYYGLVLDLGNLG---------------GN---IYLDLFISGLVELPAKLITLLLIDRLGRRY  386 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccccC---------------CC---hHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence            3 3344445555666666666655544322               22   334555667888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhchh--HHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHH
Q 011416          361 SITIMFTLSCLFLLPLVTYQSN--ILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVA  438 (486)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~  438 (486)
                      .+.++.++.+++++++...++.  +......++.+++....++..+.+..|.+|++.|+++.|+.+....+|++++|.+.
T Consensus       387 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~  466 (505)
T TIGR00898       387 TMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLV  466 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHH
Confidence            9999988888877766654333  44445555666777777888999999999999999999999999999999999999


Q ss_pred             HHHHHhhccchHHHHHHHHHHHHHHHHhcccccccCCCccc
Q 011416          439 VALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSD  479 (486)
Q Consensus       439 g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  479 (486)
                      +  .+..+...++.+++++.+++.++.++ .||+++++.+|
T Consensus       467 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~-lpet~~~~l~~  504 (505)
T TIGR00898       467 Y--LGEKWLFLPLVLFGGLALLAGILTLF-LPETKGVPLPE  504 (505)
T ss_pred             H--HHHHHHhhHHHHHHHHHHHHHHHHHc-CcCCCCCCCCC
Confidence            8  44456677888888888777766654 46888877654

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.1e-39  Score=299.89  Aligned_cols=425  Identities=21%  Similarity=0.298  Sum_probs=319.9

Q ss_pred             HHHHHHHHHHHHHHhhHhhhhchhchh--------hhhcCC--Ccch----hHHHHHHHHHHHHHHHHHHhhhhhhhcch
Q 011416           25 FVLAYAGLGWVAEAMEIMILSFVGPTV--------KSEWNL--SSTE----ESLITTSVFAGLVVGAYAWGLVADNYGRR   90 (486)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~--s~~~----~g~~~s~~~~~~~i~~~~~g~l~dr~G~r   90 (486)
                      .......++.+-.++....+++..+.+        .+++|.  +.++    .+.+.+++.+|.++|++..|.++||+|||
T Consensus        11 ~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK   90 (485)
T KOG0569|consen   11 LAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRK   90 (485)
T ss_pred             HHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence            334444444455555555555544333        345563  3333    37788999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhc---CCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHH
Q 011416           91 MGFLGEALVTAGAGLLSSF---SPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAI  166 (486)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~---a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~  166 (486)
                      ..+.++.++..++.++..+   ++++.+++++|++.|+..|.. ....-++.|..|++.||....+.+.+..+|.+++..
T Consensus        91 ~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~  170 (485)
T KOG0569|consen   91 NALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQV  170 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHH
Confidence            9999998888888776665   478999999999999999998 666679999999999999999999999999999977


Q ss_pred             HHHH--HhcCCCcHHHHHHhHHHHHHHHHHhhccCCCchhhhh-cCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCC
Q 011416          167 GAWI--IMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCL-KGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPT  243 (486)
Q Consensus       167 l~~~--l~~~~~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (486)
                      ++..  +.+...|++.+.+..+++++.++...++||+|+|+.. +++.+++++.++..+..++.+.+.++..++.+.+..
T Consensus       171 ~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~  250 (485)
T KOG0569|consen  171 LGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEEL  250 (485)
T ss_pred             HccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhcc
Confidence            7653  3355579999999999999999999999999999987 788999999998887655443332222221111111


Q ss_pred             CCCCCccchhhcccCCCCCcccCCCchhhhHhhhchhhHHH-HHHHHHHHHH-HHHHHHHHHHHHhhhccccccCCCCcc
Q 011416          244 GERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLART-TILLWLLLFG-NSFAYYAVVLLISELSSLDTRCRSPLM  321 (486)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (486)
                      +                      +....+++++++++..|. ..+.+...++ .....+....|...+.           
T Consensus       251 ~----------------------~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~-----------  297 (485)
T KOG0569|consen  251 E----------------------KKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIF-----------  297 (485)
T ss_pred             c----------------------cccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHH-----------
Confidence            1                      112226777776644443 3333333332 2222333333334333           


Q ss_pred             ccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhh---hch---hHHH---HHHHHHH
Q 011416          322 FSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT---YQS---NILT---TGLLFGA  392 (486)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~---~~~~~~~  392 (486)
                      ...|++..++.......++..++.++++.++.||.|||++++.+..++.+..+++..   ..+   .|..   +...++.
T Consensus       298 ~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~  377 (485)
T KOG0569|consen  298 KTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLF  377 (485)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            235789999999999999999999999999999999999999999998888777654   111   1221   2222222


Q ss_pred             H-HhhhhhhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhccccc
Q 011416          393 R-MCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFE  471 (486)
Q Consensus       393 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  471 (486)
                      . .+..+..|+.+.+.+|++|++.|++++++...++++..++....+..+.+..|. ..|+++.+.+++..++.+...||
T Consensus       378 ~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPE  456 (485)
T KOG0569|consen  378 IISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPE  456 (485)
T ss_pred             HHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcc
Confidence            2 333455789999999999999999999999999999999999999999999988 78899999999999999999999


Q ss_pred             ccCCCccccccc
Q 011416          472 TKGQELSDTVDF  483 (486)
Q Consensus       472 ~~~~~~~~~~~~  483 (486)
                      ||+|+..|..++
T Consensus       457 Tkgr~~~eI~~~  468 (485)
T KOG0569|consen  457 TKGRTPYEIIEE  468 (485)
T ss_pred             cCCCCHHHHHHH
Confidence            999988776554

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=100.00  E-value=6e-39  Score=314.00  Aligned_cols=423  Identities=21%  Similarity=0.252  Sum_probs=299.5

Q ss_pred             HHHHHHHHHHHHhhHhhhhchhchhhhhcCCC--------cchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHH
Q 011416           27 LAYAGLGWVAEAMEIMILSFVGPTVKSEWNLS--------STEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEAL   98 (486)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--------~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~   98 (486)
                      ..++.++.+...++...+++..|.+..+++.+        ..+.+++.+++.++..++++++|+++||+|||+++..+.+
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~  109 (481)
T TIGR00879        30 SLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIAL  109 (481)
T ss_pred             HHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHH
Confidence            33444455667778888889999998888877        8999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhhcC---CCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHH---HHH
Q 011416           99 VTAGAGLLSSFS---PNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGA---WII  171 (486)
Q Consensus        99 ~~~~~~~~~~~a---~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~---~~l  171 (486)
                      +.+++.+++.++   .+++.+++.|+++|++.+.. +...+++.|++|+++|++++++.+.+.++|..+++.++   ...
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~  189 (481)
T TIGR00879       110 LFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSL  189 (481)
T ss_pred             HHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence            999999888554   45668999999999999988 67778999999999999999999999999999999999   666


Q ss_pred             hcCCCcHHHHHHhHHHHHHHHHHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccc
Q 011416          172 MPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPEL  251 (486)
Q Consensus       172 ~~~~~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (486)
                      .+..+||+.|++.++..++..+..+++||+|++...+++.++.++..++....+.   +.........           .
T Consensus       190 ~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-----------~  255 (481)
T TIGR00879       190 NNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSG---EDKELLDELE-----------L  255 (481)
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCC---CcHHHHHHHH-----------H
Confidence            6778999999997777666667777889998776555554443333322211110   0000000000           0


Q ss_pred             hhhcccCCCCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchh
Q 011416          252 VHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANL  331 (486)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (486)
                      . ..... .+.+. ...........+++...+.++...+..+...........+.+.+.           ++.|.+....
T Consensus       256 ~-~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~g~~~~~~  321 (481)
T TIGR00879       256 I-DIKRS-IEKRS-VQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIF-----------ENAGVSTDHA  321 (481)
T ss_pred             H-HHHHH-HHHhh-ccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHH-----------HHcCCCchHH
Confidence            0 00000 00000 001111222222221222233333333333333333344444333           3456777788


Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhh-----hch-----hHHHH-HHHHHHHHhhhhhh
Q 011416          332 YIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT-----YQS-----NILTT-GLLFGARMCVMGAF  400 (486)
Q Consensus       332 ~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~-----~~~-----~~~~~-~~~~~~~~~~~~~~  400 (486)
                      +.......++.+++.++.+++.||++||+.+..+.++.+++++.+..     ..+     ..... ...++.+....+..
T Consensus       322 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (481)
T TIGR00879       322 FLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWG  401 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHcccc
Confidence            88888999999999999999999999999998888777777666552     110     22222 22222223333344


Q ss_pred             hhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhcccccccCCCc
Q 011416          401 TVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQEL  477 (486)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (486)
                      +....+..|.+|++.|+++.|+.+...+++++++|.+.+.+.++.++...|++.++++++++++.+.+.+|+|+++.
T Consensus       402 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~  478 (481)
T TIGR00879       402 PVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTL  478 (481)
T ss_pred             CeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCCh
Confidence            66777889999999999999999999999999999999999999899989999999988888888777777776554

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK12307 putative sialic acid transporter; Provisional

Probab=100.00  E-value=1.1e-38  Score=306.45  Aligned_cols=374  Identities=18%  Similarity=0.205  Sum_probs=277.8

Q ss_pred             CchHHHHHHHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHH
Q 011416           20 GKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALV   99 (486)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~   99 (486)
                      +++++..+..+++.++..+++.....+..|.+.+++|+|+.+.+++.+++.+++.+++++.|+++||+|||+++.++.++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~   92 (426)
T PRK12307         13 TRPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVA   92 (426)
T ss_pred             CHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence            45677778888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhcCCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcH
Q 011416          100 TAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWR  178 (486)
Q Consensus       100 ~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~  178 (486)
                      .+++.++++++++++.++++|+++|++.+.. +....++.|++|+++|+++.++...+.++|.++++.+.+.+.+..+||
T Consensus        93 ~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~  172 (426)
T PRK12307         93 YSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWR  172 (426)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHH
Confidence            9999999999999999999999999999887 777789999999999999999999999999999999999998989999


Q ss_pred             HHHHHhHHHHHHHHHHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccC
Q 011416          179 WLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSN  258 (486)
Q Consensus       179 ~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (486)
                      +.|++..+..++........||++++...+.            .. +.++                              
T Consensus       173 ~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~------------~~-~~~~------------------------------  209 (426)
T PRK12307        173 AAFFVGLLPVLLVIYIRARAPESKEWEEAKL------------SG-KGKH------------------------------  209 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCChHHHHhhh------------hc-cccc------------------------------
Confidence            9998855443333333323344432211000            00 0000                              


Q ss_pred             CCCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHH
Q 011416          259 GGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFIT  338 (486)
Q Consensus       259 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (486)
                         ++...+.....++++++++..+.........+......+....+.+.+.           .+.|.++...+......
T Consensus       210 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~g~~~~~~~~~~~~~  275 (426)
T PRK12307        210 ---SQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYL-----------AGEGFDTGVVSNLMTAA  275 (426)
T ss_pred             ---cccchhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHcCCCHHHHHHHHHHH
Confidence               0000000011455566655544433333333333333333444555443           23467778888888888


Q ss_pred             HhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHH--HhhhhhhhhHhhhccccccccch
Q 011416          339 SLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGAR--MCVMGAFTVSLIYAAEIYPTSVR  416 (486)
Q Consensus       339 ~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  416 (486)
                      .++.++++++.|++.||++||+.+..+.++.++..+.+.............++.+  +...+..+..+.++.|.+|++.|
T Consensus       276 ~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  355 (426)
T PRK12307        276 AFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVR  355 (426)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHH
Confidence            9999999999999999999999988887776665544433222111112222222  22233445667788999999999


Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHHHhhccchH
Q 011416          417 STGAGAANAMGRIGGMVCPLVAVALVANCHQMTA  450 (486)
Q Consensus       417 ~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~  450 (486)
                      ++++|+.+...++++.++|.+.|++.+..|....
T Consensus       356 g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~  389 (426)
T PRK12307        356 GLGTGLIYNLAATSGTFNSMAATWLGITMGLGAA  389 (426)
T ss_pred             hhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHH
Confidence            9999999999999999999999999998886543

>PRK03545 putative arabinose transporter; Provisional

Probab=100.00  E-value=2.4e-38  Score=299.86  Aligned_cols=372  Identities=13%  Similarity=0.065  Sum_probs=281.7

Q ss_pred             hHHHHHHHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHH
Q 011416           22 YQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTA  101 (486)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~  101 (486)
                      ++|..+..+.++.+..........+.+|.+.+++|.|.++.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+
T Consensus         6 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   85 (390)
T PRK03545          6 VAWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFI   85 (390)
T ss_pred             cchHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence            34554555555445444444456677899999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhhcCCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHH
Q 011416          102 GAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWL  180 (486)
Q Consensus       102 ~~~~~~~~a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~  180 (486)
                      ++++++++++|++.+++.|+++|++.+.. +...+++.|++|+++|++++|+...+.++|.+++|++++.+.+..|||+.
T Consensus        86 ~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~  165 (390)
T PRK03545         86 ASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTT  165 (390)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHH
Confidence            99999999999999999999999999877 67778999999999999999999999999999999999999999999999


Q ss_pred             HHHhHHHHHHHHHH-hhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCC
Q 011416          181 LGLSSIPSFILLAF-LGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNG  259 (486)
Q Consensus       181 f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (486)
                      |++.+++.++..+. ...+||+|+.     ++++ .                                            
T Consensus       166 f~~~~~~~~l~~~~~~~~~~~~~~~-----~~~~-~--------------------------------------------  195 (390)
T PRK03545        166 FLAIGGGALITLLLLIKLLPLLPSE-----HSGS-L--------------------------------------------  195 (390)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCCC-----Ccch-H--------------------------------------------
Confidence            99998887766443 4445654321     0000 0                                            


Q ss_pred             CCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHH
Q 011416          260 GNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITS  339 (486)
Q Consensus       260 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (486)
                                 +..++.++++..+.....   .+.....++....+.+.+.          .+..|.+....+.......
T Consensus       196 -----------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l----------~~~~g~s~~~~~~~~~~~~  251 (390)
T PRK03545        196 -----------KSLPLLFRRPALVSLYLL---TVVVVTAHFTAYSYIEPFV----------QQVAGLSENFATLLLLLFG  251 (390)
T ss_pred             -----------HHHHHHHhCcHHHHHHHH---HHHHHHHHHHHHHHHHHHH----------HHhcCCCccHHHHHHHHHH
Confidence                       022233333332222221   1122222222222333222          1234788888899999999


Q ss_pred             hhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH-HhhhchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhh
Q 011416          340 LAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLP-LVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRST  418 (486)
Q Consensus       340 i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (486)
                      ++.++++++.+++.||+++|.... +..+..++... ....++.+......++.+++.....+.....+.+..| +.+++
T Consensus       252 ~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~  329 (390)
T PRK03545        252 GAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDV  329 (390)
T ss_pred             HHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHH
Confidence            999999999999999999886544 44434343333 3334455555666667777776666777777778776 57899


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhccc
Q 011416          419 GAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIP  469 (486)
Q Consensus       419 ~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  469 (486)
                      ++|+.+...++|..+||.+.|.+.|+.|+...+...+++.+++.+..+...
T Consensus       330 ~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (390)
T PRK03545        330 AMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF  380 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence            999999999999999999999999999999999998888888877776665

>TIGR00891 2A0112 putative sialic acid transporter

Probab=100.00  E-value=3e-38  Score=302.00  Aligned_cols=388  Identities=20%  Similarity=0.281  Sum_probs=285.3

Q ss_pred             CCchHHHHHHHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHH
Q 011416           19 FGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEAL   98 (486)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~   98 (486)
                      .++++|+.+..++++++..+++....++..|.+.+++|++..+.|++.+++.++..+++++.|.++||+|||+++..+.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~   85 (405)
T TIGR00891         6 LTRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIV   85 (405)
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            45778889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhhcCCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-
Q 011416           99 VTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLD-  176 (486)
Q Consensus        99 ~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~-  176 (486)
                      +.+++.++++++++++.+++.|++.|++.+.. +...+++.|++|+++|+++.++.+.+.++|.++++.+++.+.+..+ 
T Consensus        86 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~  165 (405)
T TIGR00891        86 LFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGD  165 (405)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            99999999999999999999999999999888 7777899999999999999999999999999999999999887766 


Q ss_pred             -cHHHHHHhHHHHHHHHHHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhc
Q 011416          177 -WRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLL  255 (486)
Q Consensus       177 -w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (486)
                       ||+.|++.+++.++..+....+||++++...+++.++..+..++..+   .+..              .+         
T Consensus       166 ~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--------------~~---------  219 (405)
T TIGR00891       166 GWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYG---GEHR--------------IA---------  219 (405)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhc---cchh--------------hh---------
Confidence             99999887766666666666778876543221111111111111000   0000              00         


Q ss_pred             ccCCCCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHH
Q 011416          256 SSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDE  335 (486)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (486)
                              ...+......+... .+.+..+...................+.+.+.          .++.+.+..+.+...
T Consensus       220 --------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~g~s~~~~~~~~  280 (405)
T TIGR00891       220 --------NIVMTLAAAMVQSA-GKRWPTFVYLVVLVLFANLYSHPIQDLLPTYL----------KADLGLSPHTVANIV  280 (405)
T ss_pred             --------hhhhhhhHHhhhhh-hhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHH----------HHHhCCCHHHHHHHH
Confidence                    00000000001100 11111111122222222222223333334332          123578888899999


Q ss_pred             HHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH-HhhhchhHHHHHHHHHHHHhhhhhhhhHhhhcccccccc
Q 011416          336 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLP-LVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTS  414 (486)
Q Consensus       336 ~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (486)
                      ....++.+++.++.+++.||++||+.+..+.....+.... +....+.+...+..++.+++..+..+....++.|.+|++
T Consensus       281 ~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (405)
T TIGR00891       281 VFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTD  360 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcc
Confidence            9999999999999999999999999888777665333322 222334444444445556666667778888999999999


Q ss_pred             chhhHhHHHHHHHHHHHHHHHHHHHHHHHhhc-cchHH
Q 011416          415 VRSTGAGAANAMGRIGGMVCPLVAVALVANCH-QMTAV  451 (486)
Q Consensus       415 ~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g-~~~~~  451 (486)
                      .|++++|+.+.+.+++..++|.+.|.+.|..| +...+
T Consensus       361 ~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~  398 (405)
T TIGR00891       361 QRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTAL  398 (405)
T ss_pred             hhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhH
Confidence            99999999999999999999999999999988 54433

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=100.00  E-value=1.8e-37  Score=297.19  Aligned_cols=377  Identities=18%  Similarity=0.214  Sum_probs=263.5

Q ss_pred             chHHHHHHHHHHHHHHHHhhHhhhhchhchhhhhcC---CCcchhHHHHH---HHHHHHHHHHHHHhhhhhhhcchHHHH
Q 011416           21 KYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWN---LSSTEESLITT---SVFAGLVVGAYAWGLVADNYGRRMGFL   94 (486)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~s~~~~g~~~s---~~~~~~~i~~~~~g~l~dr~G~r~~~~   94 (486)
                      +++++.+...+++++++++|+..++...|.+.++++   .+..+.+...+   ..+++..++++++|+++||+|||+++.
T Consensus        18 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~   97 (432)
T PRK10406         18 RRRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSML   97 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            445666777788899999999999999999999985   45555444444   445555599999999999999999999


Q ss_pred             HHHHHHHHhhhhhhcCCCHH--------HHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHH
Q 011416           95 GEALVTAGAGLLSSFSPNYI--------TLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEA  165 (486)
Q Consensus        95 ~~~~~~~~~~~~~~~a~~~~--------~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~  165 (486)
                      .+.++++++++++++++|+.        .+++.|+++|++.|.. +...+++.|++|+++|+++.++.+.+...|.++++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~  177 (432)
T PRK10406         98 ISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLAL  177 (432)
T ss_pred             HHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999875        5889999999999988 77889999999999999999999998888888888


Q ss_pred             HHHHHHh--------cCCCcHHHHHHhHHHHHHHHHHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhc
Q 011416          166 IGAWIIM--------PRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVAR  237 (486)
Q Consensus       166 ~l~~~l~--------~~~~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (486)
                      .+...+.        +.+|||.+|++.++++++...+...+||+|++..+      ..         +.           
T Consensus       178 ~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~------~~---------~~-----------  231 (432)
T PRK10406        178 LVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETR------AL---------KE-----------  231 (432)
T ss_pred             HHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHh------hh---------cc-----------
Confidence            7765543        25799999999888777766555566776542100      00         00           


Q ss_pred             cccCCCCCCCCccchhhcccCCCCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCC
Q 011416          238 RSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCR  317 (486)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (486)
                                                      ..+++++++++..  ........+.....+|....+.|.+..      
T Consensus       232 --------------------------------~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~lp~~l~------  271 (432)
T PRK10406        232 --------------------------------AGSLKGLWRNRRA--FIMVLGFTAAGSLCFYTFTTYMQKYLV------  271 (432)
T ss_pred             --------------------------------cccHHHHHhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence                                            0034445543322  112222222334556666677776541      


Q ss_pred             CCccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHh--h--hchhHHHHHHHHHHH
Q 011416          318 SPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLV--T--YQSNILTTGLLFGAR  393 (486)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~  393 (486)
                          +..|.+..+.+.......+...++.++.|+++||++||+.+.+...+.++....+.  .  ..+.........+..
T Consensus       272 ----~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (432)
T PRK10406        272 ----NTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCAL  347 (432)
T ss_pred             ----HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence                23567777888888887888888899999999999999887766554433332221  1  112222222222222


Q ss_pred             HhhhhhhhhHhhhccccccccchhhHhHHHHHHHHH-HHHHHHHHHHHHHHhhccch-HHHHHHHHHHHHHHHHhcc
Q 011416          394 MCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRI-GGMVCPLVAVALVANCHQMT-AVVLLVVVIVTSILSVMLI  468 (486)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-g~~~~~~i~g~l~~~~g~~~-~~~~~~~~~~~~~~~~~~~  468 (486)
                      +..+...+..+.+.+|.+|++.|++++|+.+..+++ .+...|.+.+.+ +..|.+. .++..++..+++.+..++.
T Consensus       348 ~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~~~~~~l  423 (432)
T PRK10406        348 LIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVAFLVSLML  423 (432)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence            333334456778889999999999999999988774 355578877754 5556443 4444555555555555543

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=100.00  E-value=4.3e-38  Score=292.37  Aligned_cols=355  Identities=15%  Similarity=0.083  Sum_probs=262.8

Q ss_pred             HHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcCCCHHHH
Q 011416           37 EAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITL  116 (486)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a~~~~~l  116 (486)
                      +......+++.+|.+.+|+|+|..+.|++.+++++++.+++++.|+++||+|||+++..+......+......++|++.+
T Consensus         3 ~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l   82 (368)
T TIGR00903         3 SQAIWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWL   82 (368)
T ss_pred             hhHHHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            45667788999999999999999999999999999999999999999999999988776655555544333444799999


Q ss_pred             HHHHHHHHhccCcchhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHhHHHHHHH-HHHh
Q 011416          117 ITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFIL-LAFL  195 (486)
Q Consensus       117 ~~~r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~f~~~~~~~~~~-~~~~  195 (486)
                      ++.|+++|++.+...+....+.|++|+++|++++++.+.+..+|.+++++++..+.+..|||+.|++.++++++. ++.+
T Consensus        83 ~~~R~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~  162 (368)
T TIGR00903        83 LACQLLAALGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVL  162 (368)
T ss_pred             HHHHHHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHH
Confidence            999999999998666566667899999999999999999999999999999999999999999999988887765 4456


Q ss_pred             hccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCCCCcccCCCchhhhHh
Q 011416          196 GFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLM  275 (486)
Q Consensus       196 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (486)
                      +++||+|++..+  +.+ .++.                                                    ...+++
T Consensus       163 ~~lp~~p~~~~~--~~~-~~~~----------------------------------------------------~~~~~~  187 (368)
T TIGR00903       163 AALPALPFQAAE--GFG-FKDA----------------------------------------------------VKEFGA  187 (368)
T ss_pred             HHcCCCCCCCCC--Ccc-hHHH----------------------------------------------------HHHHHH
Confidence            678988754210  000 0000                                                    003445


Q ss_pred             hhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHH
Q 011416          276 LFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDT  355 (486)
Q Consensus       276 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr  355 (486)
                      +++++.   ++.....+++....++++..|.|.+.           ++.+++.. .+.......+.+.++   .+++.||
T Consensus       188 ll~~~~---~~~~~~~~~~~~~~~~~~~~wlp~~L-----------~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~  249 (368)
T TIGR00903       188 LAGRKD---LWIIGAILGFGVALFDNLAIWLEAAL-----------RPAGLEDI-AGDAVALAILAGLIG---VAVIPDR  249 (368)
T ss_pred             HHcChh---HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHCCCChH-HHHHHHHHHHHHHHH---HHHhhHH
Confidence            555533   45555666777777888888888776           23355543 455555555544444   5777777


Q ss_pred             hch---hHHHH-HHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHHHHHHH
Q 011416          356 AGR---KLSIT-IMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGG  431 (486)
Q Consensus       356 ~g~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~  431 (486)
                      ..|   |+... ....+.++....+....+.........+.+++....++..+++.+|.+|++.|+++.|+.+..+++++
T Consensus       250 ~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~  329 (368)
T TIGR00903       250 VARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAIS  329 (368)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHH
Confidence            654   33322 23333444444444333444444555556677777778888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHh
Q 011416          432 MVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVM  466 (486)
Q Consensus       432 ~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  466 (486)
                      ..+|.+.+.+..  +....|..+++..+++++..+
T Consensus       330 ~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~  362 (368)
T TIGR00903       330 VALALAAMLFIS--SAEAYFTFLAILITIAFAIAL  362 (368)
T ss_pred             HHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHH
Confidence            999999988774  666677888877777777664

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=100.00  E-value=3.2e-37  Score=291.49  Aligned_cols=377  Identities=14%  Similarity=0.098  Sum_probs=279.9

Q ss_pred             HHHHHHHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHH
Q 011416           23 QCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAG  102 (486)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~  102 (486)
                      .|.....++++.+.... ....++..|.+++|+|+|.++.|++.+.+.+++.+++++.|+++||+|||+++..+..++++
T Consensus         8 ~~~~~~~~~~~~~~~~~-~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~   86 (393)
T PRK09705          8 NFMLLVLVLIGLNMRPL-LTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAV   86 (393)
T ss_pred             HHHHHHHHHHHHHcchh-hhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHH
Confidence            34444444444444333 36778999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcCCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CcHHH
Q 011416          103 AGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRL-DWRWL  180 (486)
Q Consensus       103 ~~~~~~~a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~-~w~~~  180 (486)
                      +.+++++++|++.+++.|+++|++.+.. +....++.+++| ++|+++++++..+..+|..+++.+++.+.++. +||..
T Consensus        87 ~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~  165 (393)
T PRK09705         87 GALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQT  165 (393)
T ss_pred             HHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence            9999999999999999999999999987 566678888886 88999999999999999999999999988875 89998


Q ss_pred             HHHhHHHHHHHHHHhhccCC-CchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCC
Q 011416          181 LGLSSIPSFILLAFLGFQPE-SPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNG  259 (486)
Q Consensus       181 f~~~~~~~~~~~~~~~~~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (486)
                      +.+.++..++..+.++...+ .|+      + ++            ++                                
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~------~-~~------------~~--------------------------------  194 (393)
T PRK09705        166 LAWWALPAVVALFAWWWQSAREVA------S-SH------------KT--------------------------------  194 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCc------c-cc------------CC--------------------------------
Confidence            87766655444333322211 110      0 00            00                                


Q ss_pred             CCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHH
Q 011416          260 GNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITS  339 (486)
Q Consensus       260 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (486)
                         +   .    ..++.++++   ..+......+.....++....+.+.+.           .++|.+..+++......+
T Consensus       195 ---~---~----~~~~~l~~~---~~~~l~~~~~~~~~~~~~~~~~lp~~l-----------~~~g~s~~~ag~~~~~~~  250 (393)
T PRK09705        195 ---T---T----TPVRVVFTP---RAWTLGVYFGLINGGYASLIAWLPAFY-----------IEIGASAQYSGSLLALMT  250 (393)
T ss_pred             ---C---c----CCcccccCH---hHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHcCCChhhhhHHHHHHH
Confidence               0   0    000111111   122233333344455566666666554           235788899999999999


Q ss_pred             hhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhhcccccc-ccchhh
Q 011416          340 LAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYP-TSVRST  418 (486)
Q Consensus       340 i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  418 (486)
                      ++.++++++.+++.||++||+....+..+.+++.+.+...++... ....++.+++.+...+.......+..+ ++.+++
T Consensus       251 i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~  329 (393)
T PRK09705        251 LGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLP-VLWAMVCGLGLGGAFPLCLLLALDHSVQPAIAGK  329 (393)
T ss_pred             HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHH-HHHHHHHHHhccchHHHHHHHHHhhcCCHHHHHH
Confidence            999999999999999999999888887777776665443222111 122344567777777777666667764 578899


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHHHHhcccccccCCCc
Q 011416          419 GAGAANAMGRIGGMVCPLVAVALVANCH-QMTAVVLLVVVIVTSILSVMLIPFETKGQEL  477 (486)
Q Consensus       419 ~~g~~~~~~~~g~~~~~~i~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (486)
                      .+|+.+...++++.++|.+.|++.|..| +...+.+..+++++..+..+.+.+|++.+.+
T Consensus       330 ~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (393)
T PRK09705        330 LVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQLW  389 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence            9999999999999999999999999987 4555666666666666666777777776654

>PRK09952 shikimate transporter; Provisional

Probab=100.00  E-value=1.5e-36  Score=290.75  Aligned_cols=382  Identities=16%  Similarity=0.157  Sum_probs=269.4

Q ss_pred             hHHHHHHHHHHHHHHHHhhHhhhhchhch-hhhhc--CCCcchhHHHH-----HHHHHHHHHHHHHHhhhhhhhcchHHH
Q 011416           22 YQCFVLAYAGLGWVAEAMEIMILSFVGPT-VKSEW--NLSSTEESLIT-----TSVFAGLVVGAYAWGLVADNYGRRMGF   93 (486)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~s~~~~g~~~-----s~~~~~~~i~~~~~g~l~dr~G~r~~~   93 (486)
                      ++++.+...+++++++++|...++.+.|. +.+++  +.++. .+++.     ++.+++..+++++.|+++||+|||+++
T Consensus        19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l   97 (438)
T PRK09952         19 RARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRML   97 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHH
Confidence            44567777888999999999999988875 45555  66665 46554     355667889999999999999999999


Q ss_pred             HHHHHHHHHhhhhhhcCCCHH--------HHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHH
Q 011416           94 LGEALVTAGAGLLSSFSPNYI--------TLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSE  164 (486)
Q Consensus        94 ~~~~~~~~~~~~~~~~a~~~~--------~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~  164 (486)
                      ..+.++++++++++++++|++        .+++.|+++|++.|.. +....++.|++|+++|++..+..+.+..+|.+++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~  177 (438)
T PRK09952         98 MLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLS  177 (438)
T ss_pred             HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence            999999999999999999987        5888999999999998 7777899999999999999999999999999998


Q ss_pred             HHHHHHHh--------cCCCcHHHHHHhHHHHHHHHHHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhh
Q 011416          165 AIGAWIIM--------PRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVA  236 (486)
Q Consensus       165 ~~l~~~l~--------~~~~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (486)
                      ..+...+.        +.+|||.+|++.+++.++...+....||+|++...+++.++.+                     
T Consensus       178 ~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~~~---------------------  236 (438)
T PRK09952        178 TGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAAAK---------------------  236 (438)
T ss_pred             HHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhccccc---------------------
Confidence            87776654        3579999999988776655555556677765421110000000                     


Q ss_pred             ccccCCCCCCCCccchhhcccCCCCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccC
Q 011416          237 RRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRC  316 (486)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (486)
                                                   .+  ....+.+++++.  .........++..+.+|....+.+.+.+     
T Consensus       237 -----------------------------~~--~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~y~~-----  278 (438)
T PRK09952        237 -----------------------------KR--IPVIEALLRHPG--AFLKIIALRLCELLTMYIVTAFALNYST-----  278 (438)
T ss_pred             -----------------------------cc--CCHHHHHHHchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence                                         00  001122222221  1222222333444455555556554431     


Q ss_pred             CCCccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhh---h-chhHHHHHHHHHH
Q 011416          317 RSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT---Y-QSNILTTGLLFGA  392 (486)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~  392 (486)
                           +..|.+...........++..+++.++.|+++||++||+.+..+.++.+++.+.+..   . ++.+......++.
T Consensus       279 -----~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  353 (438)
T PRK09952        279 -----QNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLA  353 (438)
T ss_pred             -----HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence                 234566655445555667778888999999999999999888776665544332222   1 1223333344455


Q ss_pred             HHhhhhhhhhHhhhccccccccchhhHhHHHHHHHH-HHHHHHHHHHHHHHHhhc--cchHHHHHHHHHHHHHHHHhcc
Q 011416          393 RMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGR-IGGMVCPLVAVALVANCH--QMTAVVLLVVVIVTSILSVMLI  468 (486)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~g~~~~~~i~g~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~  468 (486)
                      +++.+...+..+++..|.+|++.|+++.|+.+..+. +++.++|.+.+++.+..+  +...+...+++.+++.+..+..
T Consensus       354 ~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~  432 (438)
T PRK09952        354 NIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM  432 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence            666677778888999999999999999999776654 899999999999998653  4555666666666666555543

>PRK10489 enterobactin exporter EntS; Provisional

Probab=100.00  E-value=2.5e-37  Score=295.54  Aligned_cols=386  Identities=18%  Similarity=0.054  Sum_probs=296.5

Q ss_pred             HHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhh----
Q 011416           33 GWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSS----  108 (486)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~----  108 (486)
                      ..++..+......+..|.+.++++.+..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+..+    
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~  104 (417)
T PRK10489         25 ARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAF  104 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHH
Confidence            3455556666777888999999999999999999999999999999999999999999999988887777665543    


Q ss_pred             -cCCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHhHH
Q 011416          109 -FSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSI  186 (486)
Q Consensus       109 -~a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~f~~~~~  186 (486)
                       ..++++.+++.|++.|++.+.. ++..+++.|+.|+++|+++.++.....++|..+||.+++.+.+..+|++.|++.++
T Consensus       105 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~  184 (417)
T PRK10489        105 LPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAA  184 (417)
T ss_pred             cCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHH
Confidence             2578899999999999998877 66778899999999999999999999999999999999999888899999998887


Q ss_pred             HHHHHHHHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCCCCcccC
Q 011416          187 PSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEG  266 (486)
Q Consensus       187 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (486)
                      ..++..+..+.+|++++..  +++.+. .+   +.                                             
T Consensus       185 ~~~~~~~~~~~l~~~~~~~--~~~~~~-~~---~~---------------------------------------------  213 (417)
T PRK10489        185 GTFITLLPLLRLPALPPPP--QPREHP-LR---SL---------------------------------------------  213 (417)
T ss_pred             HHHHHHHHHHhCCCCCCCC--cccccc-hH---HH---------------------------------------------
Confidence            7776666666677654311  000000 00   00                                             


Q ss_pred             CCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHH
Q 011416          267 KSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGL  346 (486)
Q Consensus       267 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  346 (486)
                         ...++.+++++..+..........   . ......+.|.+.          .+..|.++...+.......++.+++.
T Consensus       214 ---~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~p~~~----------~~~~g~~~~~~g~~~~~~~~g~~ig~  276 (417)
T PRK10489        214 ---LAGFRFLLASPVVGGIALLGGLLT---M-ASAVRVLYPALA----------DEVWQMGAAQIGLLYAAVPLGAALGA  276 (417)
T ss_pred             ---HHHHHHHHcChHHHHHHHHHHHHH---H-HHhHHHhhHHHH----------HhccCCChhHhHHHHHHHHHHHHHHH
Confidence               002334444444333322222111   1 122333444333          12357888888999999999999999


Q ss_pred             HHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHH
Q 011416          347 LLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAM  426 (486)
Q Consensus       347 ~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  426 (486)
                      ++.+++.||.++++.+..+..+.+++.+.+...++.+...+..++.+++.+...+...+++.|..|++.||+++|+.+..
T Consensus       277 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~  356 (417)
T PRK10489        277 LTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQ  356 (417)
T ss_pred             HHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence            99999999988777777777777777766666666555566666777777766777788999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhcccccccCCCccccccccCC
Q 011416          427 GRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSDTVDFTSD  486 (486)
Q Consensus       427 ~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  486 (486)
                      .++|..++|.+.|++.+..|+...+...+++.++..++.....++.|+++.+|.++|.+|
T Consensus       357 ~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (417)
T PRK10489        357 NVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEVDASD  416 (417)
T ss_pred             HhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccccccccccccCCCCC
Confidence            999999999999999999998888888888877777777777778888888888777665

>TIGR00895 2A0115 benzoate transport

Probab=100.00  E-value=1.8e-36  Score=289.09  Aligned_cols=388  Identities=25%  Similarity=0.364  Sum_probs=293.7

Q ss_pred             hcCCCchHHHHHHHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHH
Q 011416           16 HVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLG   95 (486)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~   95 (486)
                      +.+.++++|..+....+.++..+.+....++..|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||+++..
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~   87 (398)
T TIGR00895         8 KQPLSRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLW   87 (398)
T ss_pred             hCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHH
Confidence            34455677777777778888888888899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhhcCCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 011416           96 EALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPR  174 (486)
Q Consensus        96 ~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~  174 (486)
                      +.++.+++.++..++++++.+++.|++.|++.+.. +...+++.|++|+++|++++++...+..+|..+++.+++.+.+.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  167 (398)
T TIGR00895        88 SILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPV  167 (398)
T ss_pred             HHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999988 77788999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHhHHHHHHH-HHHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchh
Q 011416          175 LDWRWLLGLSSIPSFIL-LAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVH  253 (486)
Q Consensus       175 ~~w~~~f~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (486)
                      .+||..|++.++..++. .+...++||++++...+ +.++..+..++.......+.+         .+.+          
T Consensus       168 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------~~~~----------  227 (398)
T TIGR00895       168 FGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQ---------SALP----------  227 (398)
T ss_pred             ccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhcccccc---------cccc----------
Confidence            99999999886555554 45566778887654333 222222222222111100000         0000          


Q ss_pred             hcccCCCCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHH
Q 011416          254 LLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYI  333 (486)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (486)
                             ++..+.+......+.+++++..+.....+...+.....++....+.|.+.           ++.+.++.+.+.
T Consensus       228 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~g~~~~~~~~  289 (398)
T TIGR00895       228 -------EQKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLM-----------VELGFSLSLAAT  289 (398)
T ss_pred             -------ccccccchhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHcCCCHHHHHH
Confidence                   00000001111334455555555555555555555555666666666433           345788888899


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhhccccccc
Q 011416          334 DEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPT  413 (486)
Q Consensus       334 ~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (486)
                      ......++.+++.++.+++.||+++|+.............++.....+.+......++.+++.+...+...++..|.+|+
T Consensus       290 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  369 (398)
T TIGR00895       290 GGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPT  369 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH
Confidence            99999999999999999999999998544433333333333332244555666777788888888999999999999999


Q ss_pred             cchhhHhHHHHHHHHHHHHHHHHHHHHH
Q 011416          414 SVRSTGAGAANAMGRIGGMVCPLVAVAL  441 (486)
Q Consensus       414 ~~~~~~~g~~~~~~~~g~~~~~~i~g~l  441 (486)
                      +.|+++.|+.+.+..+|..++|.+.|++
T Consensus       370 ~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       370 AIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            9999999999999999999999999875

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=100.00  E-value=1.3e-36  Score=292.81  Aligned_cols=399  Identities=13%  Similarity=0.152  Sum_probs=274.9

Q ss_pred             CCchHHHHHHHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHH
Q 011416           19 FGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEAL   98 (486)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~   98 (486)
                      .++++|.++...++.....+.++..++...|.+.++ |+|..+.|++.+++.+++.+++++.|+++||+|||++++.+.+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~  101 (452)
T PRK11273         23 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI  101 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHH
Confidence            445667777777777778888888888889999988 9999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhhcC----CCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHH-HHHHHHHHHh
Q 011416           99 VTAGAGLLSSFS----PNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSV-SEAIGAWIIM  172 (486)
Q Consensus        99 ~~~~~~~~~~~a----~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~-i~~~l~~~l~  172 (486)
                      +.+++.++++++    .+++.+++.|++.|++.+.. +.....+.|++|+++|++++++.+.+.++|.. .+++++..+.
T Consensus       102 ~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~  181 (452)
T PRK11273        102 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMA  181 (452)
T ss_pred             HHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            999999888775    37888999999999999887 66667888999999999999999999999874 4555444443


Q ss_pred             cCCCcHHHHHHhHHHHHHH-HHHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccc
Q 011416          173 PRLDWRWLLGLSSIPSFIL-LAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPEL  251 (486)
Q Consensus       173 ~~~~w~~~f~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (486)
                      ...+||+.|++.+++.++. ++..+++||+|+....+++ ++.++   +    .    +.         +.++       
T Consensus       182 ~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~---~----~----~~---------~~~~-------  233 (452)
T PRK11273        182 WFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPI-EEYKN---D----Y----PD---------DYNE-------  233 (452)
T ss_pred             HhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCCh-hhhhh---c----c----cc---------cccc-------
Confidence            4459999999988877665 4556667887653111110 00000   0    0    00         0000       


Q ss_pred             hhhcccCCCCCcccCCCchhh-hHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCch
Q 011416          252 VHLLSSNGGNKTTEGKSGLSL-FLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDAN  330 (486)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (486)
                              + ++ ++...... .+.+++++   .++...+..+......+....+.|.+.+          +..|++..+
T Consensus       234 --------~-~~-~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~P~~l~----------~~~g~s~~~  290 (452)
T PRK11273        234 --------K-HE-QELTAKQIFMQYVLPNK---LLWYIAIANVFVYLLRYGILDWSPTYLK----------EVKHFALDK  290 (452)
T ss_pred             --------c-cC-CCccHHHHHHHHHHcCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HhcCCCHHH
Confidence                    0 00 00000001 11233332   2333334444444455566667776552          234677788


Q ss_pred             hHHHHHHHHhhHHHHHHHHHHHHHHh--chhHHH-HHHHHHHHHHHHHHhh--hchhHHHHHHHHHHHHhhhhhhhhHhh
Q 011416          331 LYIDEFITSLAEIPGLLLAAILVDTA--GRKLSI-TIMFTLSCLFLLPLVT--YQSNILTTGLLFGARMCVMGAFTVSLI  405 (486)
Q Consensus       331 ~~~~~~~~~i~~~~~~~~~g~l~dr~--g~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (486)
                      ++.......++.+++.++.|+++||+  +||... .....+..++.+.+..  ..+.+...+..+..+.+..+.......
T Consensus       291 ~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  370 (452)
T PRK11273        291 SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGL  370 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHH
Confidence            88888888899999999999999998  455432 2222222333322222  222333333334444433333333445


Q ss_pred             hccccccccchhhHhHHHHHHHHHHHHH-HHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhccc
Q 011416          406 YAAEIYPTSVRSTGAGAANAMGRIGGMV-CPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIP  469 (486)
Q Consensus       406 ~~~~~~~~~~~~~~~g~~~~~~~~g~~~-~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  469 (486)
                      +..|.+|++.+|+++|+.+...++|+.+ +|.+.|.+.|+.|+...|.+.+++++++++....+.
T Consensus       371 ~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~  435 (452)
T PRK11273        371 HALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM  435 (452)
T ss_pred             HHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHh
Confidence            6779999999999999999999988765 799999999999999999888888887776666554

>PRK15075 citrate-proton symporter; Provisional

Probab=100.00  E-value=5.5e-36  Score=287.15  Aligned_cols=358  Identities=17%  Similarity=0.229  Sum_probs=252.0

Q ss_pred             HHHHHHHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHH-HHH-----HHHHHHHHHHHhhhhhhhcchHHHHHH
Q 011416           23 QCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLIT-TSV-----FAGLVVGAYAWGLVADNYGRRMGFLGE   96 (486)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~-s~~-----~~~~~i~~~~~g~l~dr~G~r~~~~~~   96 (486)
                      |++....++++.++.++|+..+++..|.+.+|++.++.+.+.+. +..     .++..+++++.|+++||+|||++++.+
T Consensus        13 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~   92 (434)
T PRK15075         13 KARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVT   92 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHH
Confidence            44567788899999999999999999999999999888875443 332     222347889999999999999999999


Q ss_pred             HHHHHHhhhhhhcCCCHHH--------HHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHH
Q 011416           97 ALVTAGAGLLSSFSPNYIT--------LITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIG  167 (486)
Q Consensus        97 ~~~~~~~~~~~~~a~~~~~--------l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l  167 (486)
                      .++++++++++++++|++.        +++.|+++|++.+.. +....++.|++|+++|++++++...+.++|..+++.+
T Consensus        93 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~  172 (434)
T PRK15075         93 LSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALL  172 (434)
T ss_pred             HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999874        688999999999988 6677899999999999999999999998988888888


Q ss_pred             HHHHh--------cCCCcHHHHHHhHHHHHHHHHHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccc
Q 011416          168 AWIIM--------PRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRS  239 (486)
Q Consensus       168 ~~~l~--------~~~~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (486)
                      ++.+.        +.+|||++|++..+...+........||++++...+                .+.+           
T Consensus       173 g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~----------------~~~~-----------  225 (434)
T PRK15075        173 GYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARK----------------HRPS-----------  225 (434)
T ss_pred             HHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhh----------------hccc-----------
Confidence            77753        568999999875443322222222223321100000                0000           


Q ss_pred             cCCCCCCCCccchhhcccCCCCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCC
Q 011416          240 TLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSP  319 (486)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (486)
                                                .   ...++.+.+++  +.........+.....++....+.|.+.+        
T Consensus       226 --------------------------~---~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~l~--------  266 (434)
T PRK15075        226 --------------------------M---REIFRSLAANW--RIVLAGMLMVAMTTVSFYLITVYTPTFGK--------  266 (434)
T ss_pred             --------------------------c---ccHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence                                      0   00122222111  11222222333344455666667776542        


Q ss_pred             ccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHH-HHh-h--hchhHHHHHHHHHHHHh
Q 011416          320 LMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLL-PLV-T--YQSNILTTGLLFGARMC  395 (486)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~-~~~-~--~~~~~~~~~~~~~~~~~  395 (486)
                        +..|.+..+.++......++.+++.++.|+++||++||+....+..+.++... .+. .  .++.........+.+++
T Consensus       267 --~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (434)
T PRK15075        267 --TVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFL  344 (434)
T ss_pred             --HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence              23478878888888888899999999999999999999988776554433221 111 1  12222222333444556


Q ss_pred             hhhhhhhHhhhccccccccchhhHhHHHHHHHH-HHHHHHHHHHHHHHHhhccc
Q 011416          396 VMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGR-IGGMVCPLVAVALVANCHQM  448 (486)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~g~~~~~~i~g~l~~~~g~~  448 (486)
                      .+...+..+.+..|.+|++.|+++.|+.+.++. +++.++|.+.|++.|..|+.
T Consensus       345 ~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        345 YGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             HHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence            666666677888999999999999999766665 46889999999999998853

>PRK03699 putative transporter; Provisional

Probab=100.00  E-value=1.8e-36  Score=287.09  Aligned_cols=375  Identities=13%  Similarity=0.103  Sum_probs=290.5

Q ss_pred             hHHHHHHHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHH
Q 011416           22 YQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTA  101 (486)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~  101 (486)
                      .|++....+++.+++.+.+....++..|.+.+++|+|.++.+++.+.+.+++.+++++.|++.||+|||+++..+.++.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~   83 (394)
T PRK03699          4 NRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMI   83 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            45566667778888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhhcCCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcHH
Q 011416          102 GAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMP-RLDWRW  179 (486)
Q Consensus       102 ~~~~~~~~a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~-~~~w~~  179 (486)
                      ++.+++++++|++.+++.|+++|++.+.. +...+++.|++|+++|+++++..+...++|..++|.+.+.+.. ..+||+
T Consensus        84 i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~  163 (394)
T PRK03699         84 LAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYW  163 (394)
T ss_pred             HHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence            99999999999999999999999999877 6777889999999999999999999999999999998887654 579999


Q ss_pred             HHHHhHHHHHHHHHHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCC
Q 011416          180 LLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNG  259 (486)
Q Consensus       180 ~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (486)
                      .|.+.+++.++..+..++ .+.|+..  +++.+             + +                               
T Consensus       164 ~f~~~~~~~~~~~~~~~~-~~~p~~~--~~~~~-------------~-~-------------------------------  195 (394)
T PRK03699        164 VYACIGLVYVAIFILTLF-SEFPALG--KHAPK-------------A-D-------------------------------  195 (394)
T ss_pred             HHHHHHHHHHHHHHHHHh-cCCcccc--ccCcc-------------c-c-------------------------------
Confidence            999888777665444332 2222100  00000             0 0                               


Q ss_pred             CCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHH
Q 011416          260 GNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITS  339 (486)
Q Consensus       260 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (486)
                       .+         ..+    ....+.++......++....++....+.|.+.+          +.+|.++.+.+.......
T Consensus       196 -~~---------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~----------~~~g~s~~~~~~~~~~~~  251 (394)
T PRK03699        196 -KP---------VAK----EKWGIGVLFLAIAALLYILAQLTFISWVPEYAQ----------KKFGMSLEDAGNLVSNFW  251 (394)
T ss_pred             -Cc---------ccc----ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHcCCChHHhhHHHHHHH
Confidence             00         000    000122333334444444555666667775542          345788889999999999


Q ss_pred             hhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhH
Q 011416          340 LAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTG  419 (486)
Q Consensus       340 i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (486)
                      ++..+++++.+++.||+++|+.+.....+.++...++...++.+......++.+++.+..++...+...+..|.+ ++..
T Consensus       252 ~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-~~~~  330 (394)
T PRK03699        252 MAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-SPKL  330 (394)
T ss_pred             HHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-CHHH
Confidence            999999999999999999999888777766666555555555555555666777777777888777777777644 6778


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhccc
Q 011416          420 AGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIP  469 (486)
Q Consensus       420 ~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  469 (486)
                      .+......++|..++|.+.|++.|..|+...++..+++++++.+......
T Consensus       331 ~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (394)
T PRK03699        331 VNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILLG  380 (394)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999998888888877777765554443

>PRK03893 putative sialic acid transporter; Provisional

Probab=100.00  E-value=1.9e-36  Score=296.73  Aligned_cols=416  Identities=18%  Similarity=0.269  Sum_probs=281.4

Q ss_pred             CCchHHHHHHHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHH
Q 011416           19 FGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEAL   98 (486)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~   98 (486)
                      .++.+|+.+..+++.+++..++....++..|.+.+++|+|..+.+++.+.+.+++.+++++.|+++||+|||+++..+.+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~   93 (496)
T PRK03893         14 LNRAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIV   93 (496)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            34567788888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhhcCCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 011416           99 VTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDW  177 (486)
Q Consensus        99 ~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w  177 (486)
                      +.+++.+++++++|++.+++.|++.|++.+.. +...+++.|++|+++|++++++...+.++|..+++.+++.+.+..+|
T Consensus        94 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w  173 (496)
T PRK03893         94 LFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGW  173 (496)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence            99999999999999999999999999998877 67778899999999999999999999999999999999999999999


Q ss_pred             HHHHHHhHHHHHHHHHHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhccc
Q 011416          178 RWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSS  257 (486)
Q Consensus       178 ~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (486)
                      |+.|++..+..++.++....+||++++...+++.++.++..+.... ...+.  ........          ........
T Consensus       174 ~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~----------~~~~~~~~  240 (496)
T PRK03893        174 RALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYR-GEHRI--INILLTLA----------AAAALWFC  240 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhc-chhHH--HHHHHHHH----------HHHHHHHH
Confidence            9999876554444444455567665432211111110100000000 00000  00000000          00000000


Q ss_pred             CCCCCcccCCCchh--------h---hHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCC
Q 011416          258 NGGNKTTEGKSGLS--------L---FLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHP  326 (486)
Q Consensus       258 ~~~~~~~~~~~~~~--------~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (486)
                      . . ..........        .   .....+.+.++.........+......+....+.|.+.          .++.|.
T Consensus       241 ~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l----------~~~~g~  308 (496)
T PRK03893        241 F-A-GNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYL----------KTDLGY  308 (496)
T ss_pred             H-H-hhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHH----------HhhcCC
Confidence            0 0 0000000000        0   00000000001111111111111111122334445433          134578


Q ss_pred             CCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhh--chhHHHHHHHHHHHHhhhhhhhhHh
Q 011416          327 QDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY--QSNILTTGLLFGARMCVMGAFTVSL  404 (486)
Q Consensus       327 ~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  404 (486)
                      +..+++.......++.+++.++.|++.||+++|+.+..+..+..+..+.+...  .+.+......++.++...+..+...
T Consensus       309 ~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (496)
T PRK03893        309 DPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLLP  388 (496)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchhhH
Confidence            88999999999999999999999999999999998887776666554433332  2222222333333333334456677


Q ss_pred             hhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 011416          405 IYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIV  459 (486)
Q Consensus       405 ~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~  459 (486)
                      .++.|.+|++.|++++|+.+....+|+.++|.+.|.+.|..|+...+...++.+.
T Consensus       389 ~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~  443 (496)
T PRK03893        389 KLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLT  443 (496)
T ss_pred             HHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHH
Confidence            7889999999999999999999999999999999999999988777655554443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=100.00  E-value=3.7e-37  Score=291.52  Aligned_cols=365  Identities=14%  Similarity=0.125  Sum_probs=273.6

Q ss_pred             HHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhh
Q 011416           29 YAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSS  108 (486)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~  108 (486)
                      ...+...+........++..|.+.+++|+|.++.|++.+++.+++.+++++.|+++||+|||+++..+.++.+++.++++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~   86 (377)
T TIGR00890         7 VGTVIMCFTSGYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYA   86 (377)
T ss_pred             HHHHHHHHHhhHHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHH
Confidence            33444444445577888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHhHHH
Q 011416          109 FSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIP  187 (486)
Q Consensus       109 ~a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~f~~~~~~  187 (486)
                      +++|++.+++.|++.|++.+.. +.....+.+++| ++|+++.++...+.++|..+++++.+.+.+..+||+.|++.+++
T Consensus        87 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~  165 (377)
T TIGR00890        87 IADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGII  165 (377)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            9999999999999999999877 566677788886 67999999999999999988777777777888999999999888


Q ss_pred             HHHHHHH-hhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCCCCcccC
Q 011416          188 SFILLAF-LGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEG  266 (486)
Q Consensus       188 ~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (486)
                      .++..+. +++++++|+.. .+++.+..                                                    
T Consensus       166 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~----------------------------------------------------  192 (377)
T TIGR00890       166 FLLVIVLGAFLIGYPPGQL-IKTNIEVS----------------------------------------------------  192 (377)
T ss_pred             HHHHHHHHHHheecCchhc-cccCcccc----------------------------------------------------
Confidence            8776544 44444433210 00000000                                                    


Q ss_pred             CCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHH
Q 011416          267 KSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGL  346 (486)
Q Consensus       267 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  346 (486)
                       ......++.++++..+....   ..+...........+.+.+.           ++.+.+..+.+.......++.++++
T Consensus       193 -~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~  257 (377)
T TIGR00890       193 -VKDYTVWEMLRTPQFWVLYL---SFFLNAVSGLLLIGLYKPYG-----------QSLGLSDGFLVLAVSISSIFNGGGR  257 (377)
T ss_pred             -hhhhhHHHHHcCccHHHHHH---HHHHHhHHHHHHHHHHHHHH-----------HHcCCCHHHHHHHHHHHHHHHHHHH
Confidence             00002233343333222222   22222222222222222222           2346777778888899999999999


Q ss_pred             HHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhch--hHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHH
Q 011416          347 LLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQS--NILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAAN  424 (486)
Q Consensus       347 ~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  424 (486)
                      ++.|++.||++||+.+..+..+.+++.+.+...++  .........+.+++.+...+....+..|.+|+++|+++.|+.+
T Consensus       258 ~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~  337 (377)
T TIGR00890       258 PFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLY  337 (377)
T ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHH
Confidence            99999999999999998888888877766655432  2223334455666667677777888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Q 011416          425 AMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSI  462 (486)
Q Consensus       425 ~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~  462 (486)
                      ....+|..++|.+.|.+.+..|+...+.+.+++.+++.
T Consensus       338 ~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       338 TAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL  375 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence            99999999999999999999999888888777766553

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=100.00  E-value=6.8e-36  Score=284.37  Aligned_cols=365  Identities=14%  Similarity=0.033  Sum_probs=273.5

Q ss_pred             HHHHHHHHHHHHHHhhHhhhhchhch-hhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHh
Q 011416           25 FVLAYAGLGWVAEAMEIMILSFVGPT-VKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGA  103 (486)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~  103 (486)
                      +.+..+.+..++..++..+..+.+|. +.+++|.|..+.|++.+++.+++.+++++.|+++||+|||+++..+.++.+++
T Consensus        15 ~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~   94 (399)
T PRK05122         15 LRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALS   94 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHH
Confidence            34445667777888888888888887 67899999999999999999999999999999999999999999999988887


Q ss_pred             hhhhhcC---C-----CHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 011416          104 GLLSSFS---P-----NYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPR  174 (486)
Q Consensus       104 ~~~~~~a---~-----~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~  174 (486)
                      .+++.++   +     +++.+++.|+++|++.+.. +...+++.|++|+++|++++++...+..+|.++++.+++.+.+.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~  174 (399)
T PRK05122         95 GLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHW  174 (399)
T ss_pred             HHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHc
Confidence            6665443   2     5678999999999999988 66778889999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHhHHHHHHHHHHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhh
Q 011416          175 LDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHL  254 (486)
Q Consensus       175 ~~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (486)
                      .|||..+++.++..++..+.....|++++.   +++++                                          
T Consensus       175 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~------------------------------------------  209 (399)
T PRK05122        175 GGLAGLGLLIMLLALLGLLLARPRPAVPPV---KGERL------------------------------------------  209 (399)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhcCCCCCCC---Cccch------------------------------------------
Confidence            999999887666555443333222322110   00000                                          


Q ss_pred             cccCCCCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHH
Q 011416          255 LSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYID  334 (486)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (486)
                                       ++++.+++. ++...    ......+.+.....+.+.+..           +.+.  ...+..
T Consensus       210 -----------------~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~-----------~~~~--~~~~~~  254 (399)
T PRK05122        210 -----------------PFRRVLGRV-WPYGM----GLALASIGFGTIATFITLYYA-----------ARGW--DGAALA  254 (399)
T ss_pred             -----------------hHHHHHHHH-HHHHH----HHHHHHHHHHHHHHHHHHHHH-----------Hccc--ccchHH
Confidence                             111111110 01111    111112222223333333221           1233  234555


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhhcccccccc
Q 011416          335 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTS  414 (486)
Q Consensus       335 ~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (486)
                      .....++.+++.++.|++.||+++|+.+..+..+.+++.+.+...++.+...+..++.+++.+..++.......|..|++
T Consensus       255 ~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~  334 (399)
T PRK05122        255 LTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQ  334 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHH
Confidence            66778888999999999999999999988888887777777666666666666677788888888888777888899999


Q ss_pred             chhhHhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhccc
Q 011416          415 VRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIP  469 (486)
Q Consensus       415 ~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  469 (486)
                      .|++++|+.+...++|..++|.+.|.+.+..|+...+.+.+++.+++.+..+.+.
T Consensus       335 ~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  389 (399)
T PRK05122        335 NRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLY  389 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999998888888888887776666554

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=100.00  E-value=1.6e-36  Score=292.97  Aligned_cols=392  Identities=16%  Similarity=0.104  Sum_probs=271.6

Q ss_pred             hhcCCCchHHHHHHHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHH
Q 011416           15 THVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFL   94 (486)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~   94 (486)
                      +..+.++++++.+...+...+....+....++..|.+.+++|++..+.+++.+.+.+++.+++++.|+++||+|||+++.
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~  105 (476)
T PLN00028         26 RLFSFARPHMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSA  105 (476)
T ss_pred             cccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHH
Confidence            34445566677777777888888888888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhhcCCCHHHHHHHHHHHHhccCcchhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHh--
Q 011416           95 GEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIM--  172 (486)
Q Consensus        95 ~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~--  172 (486)
                      .+.++++++.+++++++|++.+++.|++.|++.+...+...++.|++|+++|++++|+.....++|..+++.+...+.  
T Consensus       106 ~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~  185 (476)
T PLN00028        106 FLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPL  185 (476)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998766445567889999999999999998877777777766554432  


Q ss_pred             --c-----CCCcHHHHHHhHHHHHHHHHHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCC
Q 011416          173 --P-----RLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGE  245 (486)
Q Consensus       173 --~-----~~~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (486)
                        +     ..|||+.|++.+++.++..+..++++++++.    ++.++.+       +...                   
T Consensus       186 ~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~----~~~~~~~-------~~~~-------------------  235 (476)
T PLN00028        186 IKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPD----GNYRELK-------KSGT-------------------  235 (476)
T ss_pred             HHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCC----CchhhHH-------hcCc-------------------
Confidence              2     2589999999998887765555555433211    0000000       0000                   


Q ss_pred             CCCccchhhcccCCCCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCC
Q 011416          246 RAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHH  325 (486)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (486)
                                        .++......+++.++.+.   ++..++.++......+....+.+.+.          .+..|
T Consensus       236 ------------------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~p~~l----------~~~~g  284 (476)
T PLN00028        236 ------------------MPKDSFSKVLRYGVTNYR---TWILALTYGYSFGVELTMDNIIAEYF----------YDRFG  284 (476)
T ss_pred             ------------------cccccHHHHHHHHHcCch---hHHHHHHHHHHHHHHHHHHhHHHHHH----------HHhcC
Confidence                              000000012233333322   23333333333333334444444433          13457


Q ss_pred             CCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchh-------HHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhh
Q 011416          326 PQDANLYIDEFITSLAEIPGLLLAAILVDTAGRK-------LSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMG  398 (486)
Q Consensus       326 ~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (486)
                      .+..+++.......++.+++++++|+++||++||       ....+...+.++..+.+....+.+......++.+++.+.
T Consensus       285 ~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~  364 (476)
T PLN00028        285 LSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQA  364 (476)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence            8889999999999999999999999999999865       223333333333333333344444444445555666555


Q ss_pred             hhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhccc
Q 011416          399 AFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIP  469 (486)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  469 (486)
                      ..+..+++..+..| +.+|++.|+.+..+++|+.++|.+.+ ..+..++...|.+.+++.++++++.++..
T Consensus       365 ~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~  433 (476)
T PLN00028        365 ACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH  433 (476)
T ss_pred             hhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence            66667777777654 67999999998887788888777654 11223477788888888877777666553

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=100.00  E-value=2.3e-35  Score=278.46  Aligned_cols=368  Identities=11%  Similarity=0.058  Sum_probs=273.9

Q ss_pred             chHHHHHHHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHH
Q 011416           21 KYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVT  100 (486)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~  100 (486)
                      |..|..+..+..+.+..........+.+|.+.+++|+++++.|+..+++.++..+++++.|.++||+|||+++..+.++.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~   95 (394)
T PRK10213         16 RPNWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLL   95 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHH
Confidence            34666655555555555555556666789999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhhcCCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHH
Q 011416          101 AGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRW  179 (486)
Q Consensus       101 ~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~  179 (486)
                      +++.+++++++|++.+++.|+++|++.+.. +...+++.|++|+++|++++++...+.++|.+++|++++.+.+.+|||+
T Consensus        96 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~  175 (394)
T PRK10213         96 TLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRN  175 (394)
T ss_pred             HHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHH
Confidence            999999999999999999999999999988 7777889999999999999999999999999999999999999999999


Q ss_pred             HHHHhHHHHHHHHHH-hhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccC
Q 011416          180 LLGLSSIPSFILLAF-LGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSN  258 (486)
Q Consensus       180 ~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (486)
                      .|++.++++++..+. ....||+|++     +++..+                                           
T Consensus       176 ~f~~~~~l~~~~~l~~~~~~p~~~~~-----~~~~~~-------------------------------------------  207 (394)
T PRK10213        176 VFNAAAVMGVLCIFWIIKSLPSLPGE-----PSHQKQ-------------------------------------------  207 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCcc-----cccchh-------------------------------------------
Confidence            999988776665433 3345654321     000000                                           


Q ss_pred             CCCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHH-hhhccccccCCCCccccCCCCCchhHHHHHH
Q 011416          259 GGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLI-SELSSLDTRCRSPLMFSHHPQDANLYIDEFI  337 (486)
Q Consensus       259 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (486)
                                   ..+..++++..+.....   .+......+....+. |.+.           ++.|.++...+.....
T Consensus       208 -------------~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~p~~~-----------~~~g~s~~~~g~~~~~  260 (394)
T PRK10213        208 -------------NTFRLLQRPGVMAGMIA---IFMSFAGQFAFFTYIRPVYM-----------NLAGFGVDGLTLVLLS  260 (394)
T ss_pred             -------------HHHHHhcCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-----------HhcCCChhHHHHHHHH
Confidence                         11223333332222222   222222222222232 3222           3457888888998999


Q ss_pred             HHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchh
Q 011416          338 TSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRS  417 (486)
Q Consensus       338 ~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (486)
                      .+++.+++.++.+++.||.+++.......+..+..+++....++.+......++.|++.+...+...+.+.+..| ++++
T Consensus       261 ~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~  339 (394)
T PRK10213        261 FGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWSTWITRSLA-DQAE  339 (394)
T ss_pred             HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCc-ccHH
Confidence            999999999999999999654444443333333334443444555666667777888888888888888888887 4467


Q ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Q 011416          418 TGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILS  464 (486)
Q Consensus       418 ~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~  464 (486)
                      ...++.....++|..+||.+.|++.|..|+...+...+.+.++..+.
T Consensus       340 ~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~  386 (394)
T PRK10213        340 KAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTALL  386 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHH
Confidence            77788888889999999999999999988877777766655544433

>TIGR00893 2A0114 d-galactonate transporter

Probab=100.00  E-value=1.6e-36  Score=289.48  Aligned_cols=383  Identities=18%  Similarity=0.217  Sum_probs=276.3

Q ss_pred             HHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcCCCH
Q 011416           34 WVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNY  113 (486)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a~~~  113 (486)
                      ++..++++..++...|.+.+++|.+..+.|++.+++.++..++.++.|+++||+|||+++..+.++.+++..++++++|+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~   82 (399)
T TIGR00893         3 TVINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAY   82 (399)
T ss_pred             ehHHHHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCH
Confidence            45677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHhHHHHHHHH
Q 011416          114 ITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILL  192 (486)
Q Consensus       114 ~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~f~~~~~~~~~~~  192 (486)
                      +.+++.|++.|++.+.. +...+++.|++|+++|++++++.+...++|.++++.+++.+.+..+||+.|++.+++.++..
T Consensus        83 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  162 (399)
T TIGR00893        83 VSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWG  162 (399)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence            99999999999999888 77788999999999999999999999999999999999999899999999999888777764


Q ss_pred             HH-hhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCCCCcccCCCchh
Q 011416          193 AF-LGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLS  271 (486)
Q Consensus       193 ~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (486)
                      +. .+..||+|+..  +...++.++...+  . ...                 +.              +++++.+....
T Consensus       163 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~-~~~-----------------~~--------------~~~~~~~~~~~  206 (399)
T TIGR00893       163 VLWLKFIPDPPQKA--KWLTEEEKYIVVG--G-LLA-----------------EQ--------------QGKGPSTPKKY  206 (399)
T ss_pred             HHhhheecCCCCcc--ccCCHHHHhhcch--h-hcc-----------------cc--------------ccccccCCCcc
Confidence            44 44456654321  1111111000000  0 000                 00              00000001111


Q ss_pred             hhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHHHHH
Q 011416          272 LFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAI  351 (486)
Q Consensus       272 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~  351 (486)
                      ..++.++++.   ++......+...........+.+.+.+          +..+.++.+.+.......++.+++.++.|+
T Consensus       207 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  273 (399)
T TIGR00893       207 QIKELLKDRR---VWGLALGQFLVNIGLGFFLTWFPTYLV----------QERGLSILEAGFMASLPGIVGFIGMILGGR  273 (399)
T ss_pred             chHHHhcCHH---HHHHHHHHHHHHhHHHHHHHHHHHHHH----------HHhcccHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            3444444433   333333334444444444455554431          234677888889999999999999999999


Q ss_pred             HHHHhchhH--HHHHHHH--H----HHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHH
Q 011416          352 LVDTAGRKL--SITIMFT--L----SCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAA  423 (486)
Q Consensus       352 l~dr~g~~~--~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  423 (486)
                      +.||++||+  .......  .    ..+........++.+... .....+.+..+..+...++..|.+|++.|++++|+.
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  352 (399)
T TIGR00893       274 LSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAAL-ALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLI  352 (399)
T ss_pred             HHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHH-HHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHH
Confidence            999999985  1111111  1    111111111112233223 333333334447889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHHHHh
Q 011416          424 NAMGRIGGMVCPLVAVALVANCH-QMTAVVLLVVVIVTSILSVM  466 (486)
Q Consensus       424 ~~~~~~g~~~~~~i~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~  466 (486)
                      +.+.++|+.++|.+.|.+.|..| +...+.+.+++.+++.+..+
T Consensus       353 ~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  396 (399)
T TIGR00893       353 NSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL  396 (399)
T ss_pred             HHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988 77777777777776665554

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=100.00  E-value=1.5e-35  Score=288.17  Aligned_cols=393  Identities=15%  Similarity=0.094  Sum_probs=285.9

Q ss_pred             hHHHHHHHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHH
Q 011416           22 YQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTA  101 (486)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~  101 (486)
                      ++|..+..++++.++..+|..+++..+|.+.+++|.+.++.+|+.+.+.+++.++.+++|+++||+|||+++..+..+.+
T Consensus         3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~   82 (495)
T PRK14995          3 RQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFG   82 (495)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            35778889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhhcCCCHHHHHHHHHHHHhccCcc-hhhhhhhcccc-CCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHH
Q 011416          102 GAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFV-PPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRW  179 (486)
Q Consensus       102 ~~~~~~~~a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~  179 (486)
                      ++++++++++|++.++++|+++|+|.+.. +.....+.+++ |+++|++++|+.....++|..+||.+++.+.++.+||+
T Consensus        83 ~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~  162 (495)
T PRK14995         83 LASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGS  162 (495)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHH
Confidence            99999999999999999999999999887 66666676665 67999999999999999999999999999999999999


Q ss_pred             HHHHhHHHHHHHH-HHhhccCCCchhhhhcCChHHHHHHHH------HHHHhc-CCCCCCchhhhccccCCCCCCCCccc
Q 011416          180 LLGLSSIPSFILL-AFLGFQPESPRYLCLKGRTAEAHRALE------KIAQVN-KTKLPNGKLVARRSTLPTGERAPPEL  251 (486)
Q Consensus       180 ~f~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (486)
                      .|++...+.++.. +..+++||+++..  +++.+.......      ...... ..+.....              ....
T Consensus       163 ~f~i~~~~~~~~~~l~~~~l~~~~~~~--~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~--------------~~~~  226 (495)
T PRK14995        163 VFLINVPIVLVVMGLTARYVPRQAGRR--DQPLNLGHALMLIVAILLLVYSAKTALKGFLSL--------------WVTS  226 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCCCC--CCCCChHhHHHHHHHHHHHHHHHHhccccCCch--------------HHHH
Confidence            9999877766653 4455667765321  111111111000      000000 00000000              0000


Q ss_pred             hhhccc-----CCCCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCC
Q 011416          252 VHLLSS-----NGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHP  326 (486)
Q Consensus       252 ~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (486)
                      ......     .....+.+.+.+..+++ +++++....   .....+.....+++...+.+.+.+          ..+|.
T Consensus       227 ~~~~~~~~~l~~f~~~e~~~~~p~~~~~-lf~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~lq----------~v~g~  292 (495)
T PRK14995        227 LTLLTGALLLGLFIRTQLAASRPMIDMR-LFTHRIILS---GVVMAMTAMITLVGFELLMAQELQ----------FVHGL  292 (495)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCcCHH-HhCCcccHH---HHHHHHHHHHHHHHHHHHHHHHHH----------HHcCC
Confidence            000000     00000001111222333 344433222   222222233334444444443331          23479


Q ss_pred             CCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhh---hchhHHHHHHHHHHHHhhhhhhhhH
Q 011416          327 QDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT---YQSNILTTGLLFGARMCVMGAFTVS  403 (486)
Q Consensus       327 ~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  403 (486)
                      ++.+++.......++..++.++.|++.||+|+|+.+..+.++.+++.+.+..   ..+.+......++.|++.+...+..
T Consensus       293 s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~  372 (495)
T PRK14995        293 SPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLAS  372 (495)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHH
Confidence            9999999999999999999999999999999999888888877776655543   2344445566777888888888888


Q ss_pred             hhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 011416          404 LIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVAN  444 (486)
Q Consensus       404 ~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~  444 (486)
                      .....+..|+++++.+.++.+...++|+.+|+.+.|.+.++
T Consensus       373 ~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~  413 (495)
T PRK14995        373 TSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLSR  413 (495)
T ss_pred             HHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888999999999999999999999999999999998764

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=100.00  E-value=7.3e-36  Score=289.50  Aligned_cols=396  Identities=14%  Similarity=0.149  Sum_probs=287.6

Q ss_pred             CCchHHHHHHHHHHHHHHHHhhHhhhhchhchhhh----------------------hcCCCcchhHHHHHHHHHHHHHH
Q 011416           19 FGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKS----------------------EWNLSSTEESLITTSVFAGLVVG   76 (486)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~s~~~~g~~~s~~~~~~~i~   76 (486)
                      ..+.||.+..++++++.+++.++..++...+.+.+                      |++++..+.|++.+++.+++.++
T Consensus        13 ~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~   92 (465)
T TIGR00894        13 FCSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIII   92 (465)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHH
Confidence            56778899999999999999999999999988877                      89999999999999999999999


Q ss_pred             HHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcC--CCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHH
Q 011416           77 AYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFS--PNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIF  153 (486)
Q Consensus        77 ~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a--~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~  153 (486)
                      +++.|+++||+|||+++..+.++++++.+++.++  .+++.+++.|+++|++.+.. +....++.|++|+++|++++++.
T Consensus        93 ~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  172 (465)
T TIGR00894        93 QIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMS  172 (465)
T ss_pred             HcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHH
Confidence            9999999999999999999999999998887543  67889999999999999998 77888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcC-CCcHHHHHHhHHHHHHHHHHhh-ccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCC
Q 011416          154 SSFWTIGSVSEAIGAWIIMPR-LDWRWLLGLSSIPSFILLAFLG-FQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPN  231 (486)
Q Consensus       154 ~~~~~~G~~i~~~l~~~l~~~-~~w~~~f~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (486)
                      ..+..+|.++++++++.+.+. .+||..|++.++++++..+.++ +.+|+|+...  +..++.++..+   +....+   
T Consensus       173 ~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~--~~~~~~~~~i~---~~~~~~---  244 (465)
T TIGR00894       173 TSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHP--CISKFEKKYIN---SSLQGQ---  244 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCC--CCCHHHHHHHH---hhcccc---
Confidence            999999999999999999888 4999999999988877655544 4556664211  11111111110   000000   


Q ss_pred             chhhhccccCCCCCCCCccchhhcccCCCCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 011416          232 GKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSS  311 (486)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (486)
                                                      .++.+...+++++++++.   ++......++....++....+.|.+.+
T Consensus       245 --------------------------------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~lp~~l~  289 (465)
T TIGR00894       245 --------------------------------KGSTRQSLPIKAIPKSLP---VWAIWFAIFGHFWLYTILPTYLPTFIS  289 (465)
T ss_pred             --------------------------------cCCCCCCCCHHHHhcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                            000000114556665543   444455555566666666677776652


Q ss_pred             ccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHH--------HHHHHHHH--HHHHHHHhh-hc
Q 011416          312 LDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLS--------ITIMFTLS--CLFLLPLVT-YQ  380 (486)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~--------~~~~~~~~--~~~~~~~~~-~~  380 (486)
                                +..|.+..+.++......++.+++.+++|+++||+++|+.        +..+....  ++..+.... ..
T Consensus       290 ----------~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (465)
T TIGR00894       290 ----------WVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSA  359 (465)
T ss_pred             ----------HHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence                      3457888899999999999999999999999999754321        11111111  111111111 22


Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhh--c-cchHHHHHHHH
Q 011416          381 SNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANC--H-QMTAVVLLVVV  457 (486)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~--g-~~~~~~~~~~~  457 (486)
                      +.......+.+.+.+.+...+.......|..|+ .+|.+.|+.+..+.+++.++|.+.|.+.+..  + +...|.+.+++
T Consensus       360 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~  438 (465)
T TIGR00894       360 AFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFV  438 (465)
T ss_pred             chHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHH
Confidence            333333344444444444555555666677765 7999999999999999999999999887753  2 56677777777


Q ss_pred             HHHHHHHHhcc
Q 011416          458 IVTSILSVMLI  468 (486)
Q Consensus       458 ~~~~~~~~~~~  468 (486)
                      .+++.++....
T Consensus       439 ~~i~~i~~~~~  449 (465)
T TIGR00894       439 NILCVIFYLIF  449 (465)
T ss_pred             HHHHHHHeeee
Confidence            77776665544

>PRK12382 putative transporter; Provisional

Probab=100.00  E-value=5.1e-35  Score=277.55  Aligned_cols=363  Identities=17%  Similarity=0.081  Sum_probs=265.8

Q ss_pred             HHHHHHHHHHHHHhhHhhhhchhch-hhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhh
Q 011416           26 VLAYAGLGWVAEAMEIMILSFVGPT-VKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAG  104 (486)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~  104 (486)
                      .+..+.++.++.........+.+|. +.+++|.|..+.|++.+++.+++.++++++|+++||+|||+++..+.+...++.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~   95 (392)
T PRK12382         16 SLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAG   95 (392)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHH
Confidence            3444555566667777777788886 578999999999999999999999999999999999999999999988777665


Q ss_pred             hhh---hc-----CCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 011416          105 LLS---SF-----SPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRL  175 (486)
Q Consensus       105 ~~~---~~-----a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~  175 (486)
                      +.+   +.     .+|++.+++.|+++|++.+.. +...+++.|++|+++|++++++.+.+.++|..++|++++.+.+..
T Consensus        96 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~  175 (392)
T PRK12382         96 LAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHF  175 (392)
T ss_pred             HHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            432   22     357899999999999999877 666788899999999999999999999999999999999999999


Q ss_pred             CcHHHHHHhHHHHHHHHHHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhc
Q 011416          176 DWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLL  255 (486)
Q Consensus       176 ~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (486)
                      |||..+.+..+..++........||.++.   +++++                                           
T Consensus       176 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-------------------------------------------  209 (392)
T PRK12382        176 GFAALALTTMVLPLLAWAFNGTVRKVPAH---AGERP-------------------------------------------  209 (392)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHhccCCCCC---cccCc-------------------------------------------
Confidence            99988776555443333222222322110   00000                                           


Q ss_pred             ccCCCCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHH
Q 011416          256 SSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDE  335 (486)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (486)
                                      +.++..+........ ..+    ....+.....+.+.+.           ++.+.+  ..+...
T Consensus       210 ----------------~~~~~~~~~~~~~~~-~~l----~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~  255 (392)
T PRK12382        210 ----------------SLWSVVGLIWKPGLG-LAL----QGVGFAVIGTFVSLYF-----------ASKGWA--MAGFTL  255 (392)
T ss_pred             ----------------hHHHHHHHHHHhHHH-HHH----HHHHHhHHHHHHHHHH-----------HhcCCc--hhHHHH
Confidence                            011111110001111 111    1112222222333222           112333  245556


Q ss_pred             HHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccc
Q 011416          336 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV  415 (486)
Q Consensus       336 ~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (486)
                      ....++.++++++.|++.||+++|+.+..+..+.+++.+.+...++.+......++.+++.+...+.......|..|+++
T Consensus       256 ~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~  335 (392)
T PRK12382        256 TAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQV  335 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHH
Confidence            66777888999999999999999999888888888777766665566556666677777777778888888889999999


Q ss_pred             hhhHhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhcc
Q 011416          416 RSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLI  468 (486)
Q Consensus       416 ~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  468 (486)
                      |+++.|+.+...++|..++|.+.|.+.|+.|+...+...+++.+++.++.+..
T Consensus       336 ~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        336 RGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILS  388 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999998888887777766544

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=100.00  E-value=4.5e-35  Score=272.99  Aligned_cols=373  Identities=13%  Similarity=0.070  Sum_probs=277.6

Q ss_pred             CchHHHHHHHHHHHHHHHHhhHhhhhchhchhhh-hcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHH
Q 011416           20 GKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKS-EWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEAL   98 (486)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~   98 (486)
                      ++-.++.+.+.+++.+..+..+..++++.+.+.+ ++|+|.+|.+++.+++.+++.++.++.|++.||+|+|+++.++.+
T Consensus        29 ~~~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~l  108 (462)
T PRK15034         29 KHIARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTA  108 (462)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence            3445678888889999999999999999999876 899999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhhcC-----CCHHHHHHHHHHHHhccCcchhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHh-
Q 011416           99 VTAGAGLLSSFS-----PNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIM-  172 (486)
Q Consensus        99 ~~~~~~~~~~~a-----~~~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~-  172 (486)
                      ++++.+++.+++     +|++.+++.|++.|++.+..++....+++|+|+++||+++|+.....++|..+++++...+. 
T Consensus       109 l~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gigg~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~  188 (462)
T PRK15034        109 ILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFAGANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIF  188 (462)
T ss_pred             HHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            999999999987     89999999999999984444778889999999999999999998777788776666554432 


Q ss_pred             ----c-------------CCCcHHHHHHhHHHHHHHHHHhh-ccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchh
Q 011416          173 ----P-------------RLDWRWLLGLSSIPSFILLAFLG-FQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKL  234 (486)
Q Consensus       173 ----~-------------~~~w~~~f~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (486)
                          +             ..+||.+.++..++.++..+..+ +.++.|.   .+.+.+                      
T Consensus       189 ~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~---~~~~~~----------------------  243 (462)
T PRK15034        189 VPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS---SRASIA----------------------  243 (462)
T ss_pred             HHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc---cccCHH----------------------
Confidence                2             23478888787777766654433 3333221   000000                      


Q ss_pred             hhccccCCCCCCCCccchhhcccCCCCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 011416          235 VARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDT  314 (486)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (486)
                                                           ..+..+|++   ..+.....+++....+.++..+.|.+.+.  
T Consensus       244 -------------------------------------~~~~vlk~~---~~Wllslly~~tFG~fvg~s~~lp~~~~~--  281 (462)
T PRK15034        244 -------------------------------------DQLPVLQRL---HLWLLSLLYLATFGSFIGFSAGFAMLAKT--  281 (462)
T ss_pred             -------------------------------------HHHHHhCCC---chhHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence                                                 222233333   34555566666666666666666655421  


Q ss_pred             cCCCCccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhh-h-----chhHHHHHH
Q 011416          315 RCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT-Y-----QSNILTTGL  388 (486)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~  388 (486)
                                .++............+...+.++++|+++||+|+++++.++.+.+.++...... .     .+.+.....
T Consensus       282 ----------~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~  351 (462)
T PRK15034        282 ----------QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAV  351 (462)
T ss_pred             ----------HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence                      233333333344556788899999999999999999998888777666543222 1     133444444


Q ss_pred             HHHHHHhhhhhhhhHhhhccccccc---------------------cchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhc-
Q 011416          389 LFGARMCVMGAFTVSLIYAAEIYPT---------------------SVRSTGAGAANAMGRIGGMVCPLVAVALVANCH-  446 (486)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g-  446 (486)
                      .+...++.+..+...+-++.+++|+                     ++.|.+.|+....+.+|+++.|.+.|...+..| 
T Consensus       352 ~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~  431 (462)
T PRK15034        352 FMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGS  431 (462)
T ss_pred             HHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCC
Confidence            4444566666667777777777764                     157899999999999999999999999998877 


Q ss_pred             cchHHHHHHHHHHHHHHHHhccc
Q 011416          447 QMTAVVLLVVVIVTSILSVMLIP  469 (486)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~~~~  469 (486)
                      +...++.+.+..+++.++.|...
T Consensus       432 ~~~~~~~~~~~~~~~~~~~w~~y  454 (462)
T PRK15034        432 PVGAMKVFLIFYIVCVLLTWLVY  454 (462)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHh
Confidence            55677888888888888888775

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.7e-35  Score=262.10  Aligned_cols=382  Identities=16%  Similarity=0.144  Sum_probs=317.6

Q ss_pred             CCchHHHHHHHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHH
Q 011416           19 FGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEAL   98 (486)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~   98 (486)
                      .++.+++.+.+..+.....+..+.+++++.+.+.+++|+|++|.+++.++..+...+..++.|.+.||+|.|++..++.+
T Consensus         8 ~k~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~   87 (417)
T COG2223           8 GKRIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSML   87 (417)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHH
Confidence            45667778888888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhhcCC---CHHHHHHHHHHHHhccCcchhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 011416           99 VTAGAGLLSSFSP---NYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRL  175 (486)
Q Consensus        99 ~~~~~~~~~~~a~---~~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~  175 (486)
                      +..+.++..+++.   +++++++.+++.|++.+...+..+++++|+||+++|.++|+.. ..|+|..+...++..+....
T Consensus        88 l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~  166 (417)
T COG2223          88 LLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAF  166 (417)
T ss_pred             HHHHHHHHHHHHccCCchHHHHHHHHHHhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHH
Confidence            9999999998885   4559999999999999988999999999999999999999999 89999999999999998888


Q ss_pred             C---cHHHHHHhHHHHHHH-HHHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccc
Q 011416          176 D---WRWLLGLSSIPSFIL-LAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPEL  251 (486)
Q Consensus       176 ~---w~~~f~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (486)
                      +   ||.+-.+..+..++. +..++...|.|+.....++...                                      
T Consensus       167 g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~--------------------------------------  208 (417)
T COG2223         167 GFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLP--------------------------------------  208 (417)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccch--------------------------------------
Confidence            8   999988888777775 4456666666542111111000                                      


Q ss_pred             hhhcccCCCCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchh
Q 011416          252 VHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANL  331 (486)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (486)
                                         ..++.++++   +..|.+...++.....+.++..+.+.+.+          ++++.++.++
T Consensus       209 -------------------~~~~~v~~~---~~~W~lsllY~~tFG~Fvgfs~~l~~~~~----------~~fg~~~~~A  256 (417)
T COG2223         209 -------------------AQLKAVFSN---KDTWLLSLLYFATFGGFVGFSAYLPMYLV----------TQFGLSPVTA  256 (417)
T ss_pred             -------------------hHHHHHhcC---cchHHHHHHHHHHHHHHHHHHHHHHHHHH----------HhcCCChhhH
Confidence                               023333333   44566677777777777777777777663          4668999999


Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhh-------chhHHHHHHHHHHHHhhhhhhhhHh
Q 011416          332 YIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY-------QSNILTTGLLFGARMCVMGAFTVSL  404 (486)
Q Consensus       332 ~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~  404 (486)
                      +.......+.+.+.++++|+++||+|.++++...+..++++..+....       .+........+..+++.+......+
T Consensus       257 g~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvf  336 (417)
T COG2223         257 GLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVF  336 (417)
T ss_pred             HHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchhe
Confidence            999999999999999999999999999999999999888888777763       3345555556667778888888888


Q ss_pred             hhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHHHHhcccccc
Q 011416          405 IYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH-QMTAVVLLVVVIVTSILSVMLIPFET  472 (486)
Q Consensus       405 ~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (486)
                      .++..++|+ +.|.+.|+...++++|++.-|...|...+.+| +...|+++..+.+++.+..+....++
T Consensus       337 k~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~r~  404 (417)
T COG2223         337 KMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYARR  404 (417)
T ss_pred             eechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999975 58999999999999999999999999999998 77788888999888888777765443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=100.00  E-value=1.8e-34  Score=274.93  Aligned_cols=380  Identities=13%  Similarity=-0.003  Sum_probs=280.7

Q ss_pred             CchHHHHHHHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHH
Q 011416           20 GKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALV   99 (486)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~   99 (486)
                      ++..+.....+.+..+...+....+.+.+|.+.+++|.|..+.++..+.+.+++.+++++.|+++||+|||+++..+..+
T Consensus         8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~   87 (406)
T PRK15402          8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAF   87 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence            35566777777788888888888888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhcCCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcH
Q 011416          100 TAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWR  178 (486)
Q Consensus       100 ~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~  178 (486)
                      .+++.+++.++++++.+++.|+++|++.+.. +...+.+.|++|+++|.++.++......+|..++|.+++.+.+..+||
T Consensus        88 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~  167 (406)
T PRK15402         88 FILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWR  167 (406)
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcc
Confidence            9999999999999999999999999999887 677788899999999999999999988999999999999998989999


Q ss_pred             HHHHHhHHHHHHHHH-HhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhccc
Q 011416          179 WLLGLSSIPSFILLA-FLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSS  257 (486)
Q Consensus       179 ~~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (486)
                      +.|++.+++.++..+ .++..||+++...   ++.+.++    .                                    
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~----~------------------------------------  204 (406)
T PRK15402        168 GMFVLFAALAALSFFGLWRAMPETAGRVG---EKLSLKE----L------------------------------------  204 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCcccc---ccccHHH----H------------------------------------
Confidence            999998887776544 3445666543110   0000000    0                                    


Q ss_pred             CCCCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHH
Q 011416          258 NGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFI  337 (486)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (486)
                                  ...++.+++++..+....   ..+......+....+.|.+.          .+..+.++.+.+.....
T Consensus       205 ------------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~p~~~----------~~~~g~~~~~~g~~~~~  259 (406)
T PRK15402        205 ------------GRDYKLVLKNRRFVAGAL---ALGLVSLPLLAWIALSPVIL----------ISGEQLSSYEYGLLQVP  259 (406)
T ss_pred             ------------HHHHHHHHcCcHHHHHHH---HHHHHHHHHHHHHHHhHHHH----------HHHhCCCHHHHHHHHHH
Confidence                        013344444443332222   22112222222222333222          12346777788887777


Q ss_pred             HHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhh-----chhHHHHHHHHHHHHhhhhhhhhHhhhcccccc
Q 011416          338 TSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY-----QSNILTTGLLFGARMCVMGAFTVSLIYAAEIYP  412 (486)
Q Consensus       338 ~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (486)
                      ..++.+++.++.+++.||+++|+.+.++.++.+++...+...     .+.+......++.+++.+...+......... +
T Consensus       260 ~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~  338 (406)
T PRK15402        260 VFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-S  338 (406)
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-c
Confidence            778889999999999999999999888877776666555432     2333445556667777776666665554443 3


Q ss_pred             ccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhcc
Q 011416          413 TSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLI  468 (486)
Q Consensus       413 ~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  468 (486)
                      ++++|+..++.+....++..+++.+.+.+.+..+........++..++...+...+
T Consensus       339 ~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (406)
T PRK15402        339 DVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLWLLLVRIF  394 (406)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999888776654444444444443433333

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=100.00  E-value=8.9e-36  Score=286.34  Aligned_cols=397  Identities=11%  Similarity=0.037  Sum_probs=284.1

Q ss_pred             CCCchHHHHHHHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHH
Q 011416           18 GFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEA   97 (486)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~   97 (486)
                      +++.++|.++..+++.......+...++...|.+.+++|+|.++.+++.+.+.++..++.++.|+++||+|||++++.+.
T Consensus        12 ~~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~   91 (455)
T TIGR00892        12 PDGGWGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGG   91 (455)
T ss_pred             CCCCcchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhH
Confidence            56677888888888887777777777889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhhcCCCHHHHHH-HHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 011416           98 LVTAGAGLLSSFSPNYITLIT-LRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRL  175 (486)
Q Consensus        98 ~~~~~~~~~~~~a~~~~~l~~-~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~  175 (486)
                      ++.++++++++++++++.+++ .|++.|++.+.. ++..+++.++++ ++|+++.++.+.+..+|..++|++++.+.+.+
T Consensus        92 ~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~  170 (455)
T TIGR00892        92 LLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESF  170 (455)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence            999999999999999998875 579999999876 666677788885 78999999999999999999999999999999


Q ss_pred             CcHHHHHHhHHHHHHHHHHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhc
Q 011416          176 DWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLL  255 (486)
Q Consensus       176 ~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (486)
                      |||+.|++.+++.++..+..+++.+.++.. .+.+.++ .         ...  +.+         ....+  .      
T Consensus       171 gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~-~---------~~~--~~~---------~~~~~--~------  220 (455)
T TIGR00892       171 GWRGSFLILGGLLLHCCVCGALMRPVGPSQ-RVSKSKS-K---------EGL--PPD---------GSTKK--L------  220 (455)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHhCCCCccc-ccccccc-c---------ccC--CCC---------Ccccc--c------
Confidence            999999999887776554443333221100 0000000 0         000  000         00000  0      


Q ss_pred             ccCCCCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHH
Q 011416          256 SSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDE  335 (486)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (486)
                         ......++..+...++ +++++..   +......+.....++....+.+.+.           ++.+.+..+++...
T Consensus       221 ---~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~l~~~~~~~~~~~l~~~~-----------~~~g~s~~~~g~~~  282 (455)
T TIGR00892       221 ---SKKSTAEKINRFLDFS-LFTHRGF---LVYLSGNVIMFLGFFAPIIFLVPYA-----------KDKGVDEYEAAFLL  282 (455)
T ss_pred             ---cccchhhhhhhhcchH-HhcCchH---HHHHHHHHHHHHHccchHHHHHHHH-----------HHcCCCHHHHHHHH
Confidence               0000000000011122 3333322   2222223333334444444445433           23478889999999


Q ss_pred             HHHHhhHHHHHHHHHHHHHHh--chhHHHHH--HHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhhccccc
Q 011416          336 FITSLAEIPGLLLAAILVDTA--GRKLSITI--MFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIY  411 (486)
Q Consensus       336 ~~~~i~~~~~~~~~g~l~dr~--g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (486)
                      ...+++.++++++.|++.||.  ++++...+  +.+..+++.+.....++.+...+..++.+++.+...+...+.+.|.+
T Consensus       283 ~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~  362 (455)
T TIGR00892       283 SIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLV  362 (455)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHh
Confidence            999999999999999999973  33433322  33333344444444556666667777888888888888899999999


Q ss_pred             cccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHH
Q 011416          412 PTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH-QMTAVVLLVVVIVTSIL  463 (486)
Q Consensus       412 ~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g-~~~~~~~~~~~~~~~~~  463 (486)
                      |++++++++|+.+...++|++++|.+.|.+.|..+ +...+.+.+++.+++.+
T Consensus       363 ~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       363 GAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             hHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence            99999999999999999999999999999999875 66777777666655544

>PRK10091 MFS transport protein AraJ; Provisional

Probab=100.00  E-value=3.5e-34  Score=270.28  Aligned_cols=367  Identities=14%  Similarity=0.086  Sum_probs=265.4

Q ss_pred             HHHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhh
Q 011416           27 LAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLL  106 (486)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~  106 (486)
                      +....+..+..........+.+|.+.+|+|.+.++.|++.+++.+++.+++++.|+++||+|||+++..+..+.+++.++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l   84 (382)
T PRK10091          5 ILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAM   84 (382)
T ss_pred             HHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHH
Confidence            34455666777788888889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHhH
Q 011416          107 SSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSS  185 (486)
Q Consensus       107 ~~~a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~f~~~~  185 (486)
                      +++++|++.+++.|++.|++.+.. +....++.|++++++|++++++...+..+|..+++++++.+.+..+||++|++.+
T Consensus        85 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~  164 (382)
T PRK10091         85 FTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIA  164 (382)
T ss_pred             HHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHH
Confidence            999999999999999999999887 6666788899999999999999999999999999999999999899999999988


Q ss_pred             HHHHHHHH-HhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCCCCcc
Q 011416          186 IPSFILLA-FLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTT  264 (486)
Q Consensus       186 ~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (486)
                      ++.++..+ ...++||.++.    ++.+ .++                                                
T Consensus       165 ~~~~~~~~~~~~~lp~~~~~----~~~~-~~~------------------------------------------------  191 (382)
T PRK10091        165 VFNIAVLASIYFWVPDIRDE----AKGG-LRE------------------------------------------------  191 (382)
T ss_pred             HHHHHHHHHHHHhCCCCCcc----cccC-HHH------------------------------------------------
Confidence            87766543 34556765321    0000 000                                                


Q ss_pred             cCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHH
Q 011416          265 EGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIP  344 (486)
Q Consensus       265 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  344 (486)
                             .++.+++++.    +......+......+....+.+.+.          .+..|.++.+.+.......++.++
T Consensus       192 -------~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~g~s~~~~~~~~~~~~~~~~i  250 (382)
T PRK10091        192 -------QFHFLRSPAP----WLIFAATMFGNAGVFAWFSYIKPYM----------MFISGFSETSMTFIMMLVGLGMVL  250 (382)
T ss_pred             -------HHHHhcChHH----HHHHHHHHHHHHHHHHHHHHHHHHH----------HHhcCCCHHHHHHHHHHHHHHHHH
Confidence                   1111111211    1111111111111111111222111          123578888999999999999999


Q ss_pred             HHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhh-hchhHHHHHHHHHHHHhhhhhhhhHh-hhccccccccchhhHhHH
Q 011416          345 GLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT-YQSNILTTGLLFGARMCVMGAFTVSL-IYAAEIYPTSVRSTGAGA  422 (486)
Q Consensus       345 ~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~  422 (486)
                      ++++.+++.||+++|+.+..+..+.+++.+.+.. .++.+......++.+.+..+..+... ....+..+++.++.+  .
T Consensus       251 g~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~  328 (382)
T PRK10091        251 GNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--G  328 (382)
T ss_pred             HhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--H
Confidence            9999999999999999988888777777655543 33333334444444444444444333 334444455545544  4


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh-hccchHHHHHHHHHHHHHHHHhccc
Q 011416          423 ANAMGRIGGMVCPLVAVALVAN-CHQMTAVVLLVVVIVTSILSVMLIP  469 (486)
Q Consensus       423 ~~~~~~~g~~~~~~i~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~  469 (486)
                      .+...++|..++|.+.|.+.|. .++...+...++++++.........
T Consensus       329 ~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (382)
T PRK10091        329 GQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYG  376 (382)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHHh
Confidence            4677889999999999999996 4677777776666655554444443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=100.00  E-value=6.2e-35  Score=280.22  Aligned_cols=403  Identities=16%  Similarity=0.142  Sum_probs=275.8

Q ss_pred             CchHHHHHHHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHH
Q 011416           20 GKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALV   99 (486)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~   99 (486)
                      .+.++..+....+.+...+.++..+....|.+++ +|++.++.+++.+++.++..+++++.|+++||+|||+++..+.++
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~  100 (438)
T TIGR00712        22 KRLRWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL  100 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHH
Confidence            3445667777777888888888888888888876 599999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhcC----CCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHh-c
Q 011416          100 TAGAGLLSSFS----PNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIM-P  173 (486)
Q Consensus       100 ~~~~~~~~~~a----~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~-~  173 (486)
                      .+++.++.++.    ++++.+.+.|++.|++.+.. ++....+.|++|+++|++++++.+.+.++|..+++.+.+... +
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~  180 (438)
T TIGR00712       101 SAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAW  180 (438)
T ss_pred             HHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence            99998887764    46788889999999999887 667788889999999999999999999999999988776544 4


Q ss_pred             CCCcHHHHHHhHHHHHHH-HHHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccch
Q 011416          174 RLDWRWLLGLSSIPSFIL-LAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELV  252 (486)
Q Consensus       174 ~~~w~~~f~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (486)
                      ..+||..|++.++++++. ++.++++||+|+....++. ++.+         +  +.+.            +..+     
T Consensus       181 ~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~---------~--~~~~------------~~~~-----  231 (438)
T TIGR00712       181 FNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPI-EEYR---------N--DYPD------------DYNE-----  231 (438)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCc-hhcc---------c--cccc------------cccc-----
Confidence            579999999988887775 4456667776542110000 0000         0  0000            0000     


Q ss_pred             hhcccCCCCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhH
Q 011416          253 HLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLY  332 (486)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (486)
                             + .+.+.+......+.+++++..+   ......++.....++...+.|.+.+          +..|.++.+++
T Consensus       232 -------~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~p~~l~----------~~~g~s~~~~~  290 (438)
T TIGR00712       232 -------K-AEQELTAKEIFMQYVLPNKLLW---YIAIANVFVYLLRYGVLDWSPTYLK----------EVKHFALDKSS  290 (438)
T ss_pred             -------c-cccccchHHHHHHHHccCchHH---HHHHHHHHHHHHHHHHHHhHHHHHH----------HccCCChhhHH
Confidence                   0 0000000000112234443322   2222223333444555566665542          23478888889


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHH---HHHHHHHhh--hchhHHHHHHHHHHHHhhhhhhhhHhhhc
Q 011416          333 IDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLS---CLFLLPLVT--YQSNILTTGLLFGARMCVMGAFTVSLIYA  407 (486)
Q Consensus       333 ~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (486)
                      +......+.++++.+++|++.||+++++....+....   .++.+.+..  ..+.+......+..+++..+.........
T Consensus       291 ~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  370 (438)
T TIGR00712       291 WAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHA  370 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHH
Confidence            9888999999999999999999995432212222111   111122111  12233333333334443332222333467


Q ss_pred             cccccccchhhHhHHHHHHHHHHH-HHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhccccccc
Q 011416          408 AEIYPTSVRSTGAGAANAMGRIGG-MVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETK  473 (486)
Q Consensus       408 ~~~~~~~~~~~~~g~~~~~~~~g~-~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (486)
                      .|.+|++.|++++|+.+...++++ .++|.+.|.+.|+.|+...+.+..++.+++.+..+.+.+|.|
T Consensus       371 ~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (438)
T TIGR00712       371 LELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK  437 (438)
T ss_pred             HHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            789999999999999999988875 689999999999999988888888888888888777776654

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK10504 putative transporter; Provisional

Probab=100.00  E-value=1.7e-33  Score=273.64  Aligned_cols=391  Identities=14%  Similarity=0.084  Sum_probs=274.5

Q ss_pred             HHHHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhh
Q 011416           26 VLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGL  105 (486)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~  105 (486)
                      .+..++++.++..++...+.+..|.+.+++|.+..+.+++.+.+.++..++.+++|+++||+|||+++..+..+.+++.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~   90 (471)
T PRK10504         11 QLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSL   90 (471)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence            34556677888888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHh
Q 011416          106 LSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLS  184 (486)
Q Consensus       106 ~~~~a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~f~~~  184 (486)
                      +++++++++.+++.|+++|++.+.. +...+++.|++|+++|+++.++.....++|..++|.+++.+.+..+||+.|++.
T Consensus        91 ~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~  170 (471)
T PRK10504         91 FCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLIN  170 (471)
T ss_pred             HHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHH
Confidence            9999999999999999999999988 777788999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHH-hhccCCCchhhhhcCChHHHHHHHHHH------HHhcCCCCCCchhhhccccCCCCCCCCccchhhcc-
Q 011416          185 SIPSFILLAF-LGFQPESPRYLCLKGRTAEAHRALEKI------AQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLS-  256 (486)
Q Consensus       185 ~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  256 (486)
                      .....+..+. ....|+++..   +.+.+.........      ...+..+... .             .......... 
T Consensus       171 ~~~~~l~~~~~~~~~~~~~~~---~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------------~~~~~~~~~~~  233 (471)
T PRK10504        171 IPVGIIGAIATLMLMPNYTMQ---TRRFDLSGFLLLAVGMATLTLALDGSKGLG-L-------------SPLAIAGLVAV  233 (471)
T ss_pred             HHHHHHHHHHHHHhCCCcccc---CCCCChHHHHHHHHHHHHHHHHHhcCCcCC-c-------------chHHHHHHHHH
Confidence            7766665443 3344443321   11212111110000      0000000000 0             0000000000 


Q ss_pred             -----cCCCCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchh
Q 011416          257 -----SNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANL  331 (486)
Q Consensus       257 -----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (486)
                           -....++.+.+.+..+.+ +++++.....+...++.   ...+.....+.+.+.+          ...|.++...
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~----------~~~g~~~~~~  299 (471)
T PRK10504        234 GVVALLLYLLHARNNNRALFSLK-LFRTRTFSLGLAGSFAG---RIGSGMLPFMTPVFLQ----------IGLGFSPFHA  299 (471)
T ss_pred             HHHHHHHHHHHHhcCCCCccCHH-HhcccchHHHHHHHHHH---HHHHHHHHHHHHHHHH----------HHcCCCHHHH
Confidence                 000000000001111222 44444433333322222   1222222223332221          1246888888


Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhh---chhHHHHHHHHHHHHhhhhhhhhHhhhcc
Q 011416          332 YIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY---QSNILTTGLLFGARMCVMGAFTVSLIYAA  408 (486)
Q Consensus       332 ~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (486)
                      ++......++.+++.++.+++.||+++|+.+..+..+.++...++...   .+.+......++.+++.+..++.......
T Consensus       300 g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  379 (471)
T PRK10504        300 GLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTL  379 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            988888888888899999999999999999988888777665555442   22222333455566777777888888888


Q ss_pred             ccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011416          409 EIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQ  447 (486)
Q Consensus       409 ~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~  447 (486)
                      +..|++.+++++|+.+....+|..+++.+.|.+.+..++
T Consensus       380 ~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~  418 (471)
T PRK10504        380 KDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ  418 (471)
T ss_pred             HcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            999999999999999999999999999999999887765

>TIGR00900 2A0121 H+ Antiporter protein

Probab=100.00  E-value=3.2e-34  Score=270.24  Aligned_cols=352  Identities=15%  Similarity=0.064  Sum_probs=272.4

Q ss_pred             HHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhc
Q 011416           30 AGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSF  109 (486)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~  109 (486)
                      +..+.++..+......+.+|.+.++++.+..+.|++.+++.++..+++++.|+++||+|||+++..+.++.+++.++..+
T Consensus         4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~   83 (365)
T TIGR00900         4 LFAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPF   83 (365)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHH
Confidence            34556777777788888899999999999999999999999999999999999999999999999999999988888887


Q ss_pred             CC-----CHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Q 011416          110 SP-----NYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGL  183 (486)
Q Consensus       110 a~-----~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~f~~  183 (486)
                      ++     |++.+++.|++.|++.+.. +...+++.|++|+++|++++++.+.+.++|.+++|.+++.+.+..+||+.|++
T Consensus        84 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~  163 (365)
T TIGR00900        84 VALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWV  163 (365)
T ss_pred             HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            77     9999999999999999988 77789999999999999999999999999999999999999999999999998


Q ss_pred             hHHHHHHHHHHhhcc--CCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCCC
Q 011416          184 SSIPSFILLAFLGFQ--PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGN  261 (486)
Q Consensus       184 ~~~~~~~~~~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (486)
                      .++..++..+..+.+  ||+++.    ++++..++..++.                                        
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~----------------------------------------  199 (365)
T TIGR00900       164 DAVGFAISALLIVSVRIPELAAS----EIQALSNAVLRDT----------------------------------------  199 (365)
T ss_pred             HHHHHHHHHHHHHhcccccCCCc----cccccchhHHHHH----------------------------------------
Confidence            877666654443333  222110    0000000000000                                        


Q ss_pred             CcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHH-HHHhhhccccccCCCCccccCCCCCchhHHHHHHHHh
Q 011416          262 KTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVV-LLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSL  340 (486)
Q Consensus       262 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  340 (486)
                              ...++.+++++..+.........   ...+.... .+.|.+.+          +..+.++.+.+.......+
T Consensus       200 --------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~  258 (365)
T TIGR00900       200 --------REGIKFVLKNPLLRTLLLLALLF---NLVFAPAIVALFPYVQS----------KYLGRGSTHYGWVLAAFGL  258 (365)
T ss_pred             --------HhHHHHHHcCcHHHHHHHHHHHH---HHHHHHHHHHHhHHHHH----------HHhCCchHHHHHHHHHHHH
Confidence                    01344455554433333222222   12222221 23333221          1246788888999999999


Q ss_pred             hHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhch-hHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhH
Q 011416          341 AEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQS-NILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTG  419 (486)
Q Consensus       341 ~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (486)
                      +.+++.++.+++.||.+||+.+..+..+.+++...+...++ .+...+..++.+++.+...+...++..|..|++.|+++
T Consensus       259 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~  338 (365)
T TIGR00900       259 GALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRV  338 (365)
T ss_pred             HHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            99999999999999999999988887777777666665543 56666777788888888889999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011416          420 AGAANAMGRIGGMVCPLVAVALVANCH  446 (486)
Q Consensus       420 ~g~~~~~~~~g~~~~~~i~g~l~~~~g  446 (486)
                      .|+.+...+++..++|.+.|.+.|..|
T Consensus       339 ~~~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       339 FGAQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999999998754

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=100.00  E-value=1.3e-33  Score=269.85  Aligned_cols=373  Identities=15%  Similarity=0.109  Sum_probs=276.4

Q ss_pred             HHHHHHHHHHHhhHhhhhchhchhhhhcCCCcch-----hHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHH
Q 011416           28 AYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTE-----ESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAG  102 (486)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-----~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~  102 (486)
                      ..++++.++.........+.+|.+.+++|.+..+     .|++.+++.++..+++++.|+++||+|||+++..+.++.++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~   96 (408)
T PRK09874         17 TVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGI   96 (408)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHH
Confidence            3445566777777788888999999999998765     48999999999999999999999999999999999999999


Q ss_pred             hhhhhhcCCCHHHHHHHHHHHHhccCcchhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Q 011416          103 AGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLG  182 (486)
Q Consensus       103 ~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~f~  182 (486)
                      +.+++.+++|++.+++.|++.|++.+..+....++.+++|+++|+++.++...+..+|..++|.+++.+.+..+||+.|+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~  176 (408)
T PRK09874         97 VMVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFF  176 (408)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHhhhhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence            99999999999999999999999866556666788899999999999999999999999999999999998899999999


Q ss_pred             HhHHHHHHHHH-HhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCCC
Q 011416          183 LSSIPSFILLA-FLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGN  261 (486)
Q Consensus       183 ~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (486)
                      +.+++.++..+ ..++++|+++..   ++++ .. ..++                                         
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~-~~~~-----------------------------------------  210 (408)
T PRK09874        177 ITASVLFLCFLVTLFCIRENFQPV---SKKE-ML-HMRE-----------------------------------------  210 (408)
T ss_pred             HHHHHHHHHHHHHHHHhccCcccc---cchh-hh-HHHH-----------------------------------------
Confidence            98887766544 344455543211   0000 00 0000                                         


Q ss_pred             CcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCC---chhHHHHHHH
Q 011416          262 KTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQD---ANLYIDEFIT  338 (486)
Q Consensus       262 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  338 (486)
                                ..+.+.+++............   .........+.+.+...          ..+...   ...+......
T Consensus       211 ----------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~g~~~~~~  267 (408)
T PRK09874        211 ----------VVTSLKNPKLVLSLFVTTLII---QVATGSIAPILTLYVRE----------LAGNVSNIAFISGMIASVP  267 (408)
T ss_pred             ----------HHHhCcCCchHHHHHHHHHHH---HHHHHHHHHHHHHHHHH----------HhccchHHHHHHHHHHHHH
Confidence                      111111122212111111111   11111111122211100          001111   1234555566


Q ss_pred             HhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhh
Q 011416          339 SLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRST  418 (486)
Q Consensus       339 ~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (486)
                      +++.+++.+..|++.||++||+.+..+..+..++.+.....++.+...+..++.+++.+...+...+...+..|++.+|+
T Consensus       268 ~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~  347 (408)
T PRK09874        268 GVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGR  347 (408)
T ss_pred             HHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccccee
Confidence            77888889999999999999999988888777766666555566666666777888888888888888888999999999


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhccc
Q 011416          419 GAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIP  469 (486)
Q Consensus       419 ~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  469 (486)
                      .+++.+....+|..++|.+.|.+.+..|+...|...+++.+++.++.+...
T Consensus       348 ~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~  398 (408)
T PRK09874        348 IFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSL  398 (408)
T ss_pred             eehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988888888777766544

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=3.6e-34  Score=279.26  Aligned_cols=427  Identities=24%  Similarity=0.294  Sum_probs=307.0

Q ss_pred             HHHHHHHHHHHHHHHhh--Hhhhhchhchhhhhc-----CCCc--chhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHH
Q 011416           24 CFVLAYAGLGWVAEAME--IMILSFVGPTVKSEW-----NLSS--TEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFL   94 (486)
Q Consensus        24 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-----~~s~--~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~   94 (486)
                      ........+..+..+.+  ....++....+.++.     ..+.  .+.+|+.+.+.++..++++++|+++|++|||+.++
T Consensus        44 ~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~  123 (513)
T KOG0254|consen   44 ILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLL  123 (513)
T ss_pred             HHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            33344444555555554  455556666666543     2222  35599999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhhcCCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011416           95 GEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMP  173 (486)
Q Consensus        95 ~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~  173 (486)
                      ++.++..++.+++++++|+++++++|+++|+|.|.. .+...+++|..|++.||...+..+....+|..++..++....+
T Consensus       124 ~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~  203 (513)
T KOG0254|consen  124 LAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSK  203 (513)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence            999999999999999999999999999999999999 6777899999999999999999999999999999666666543


Q ss_pred             C-CCcHHHHHHhHHHHHHHHHHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccch
Q 011416          174 R-LDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELV  252 (486)
Q Consensus       174 ~-~~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (486)
                      . .+||..+.+..+++++..+..+++||+|+|+..+++.+++++.+.+++..+..+.+.+ ....+             .
T Consensus       204 ~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~-~~~~~-------------~  269 (513)
T KOG0254|consen  204 VYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVE-LELLK-------------I  269 (513)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHH-HHHHH-------------H
Confidence            3 5899999999999999877788999999999999999999999888876331111100 00000             0


Q ss_pred             hhcccCCCCCcccCCCchhhhHhhhchhhHHHHHHHHHH-HHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchh
Q 011416          253 HLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLL-LFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANL  331 (486)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (486)
                      ....   .....+.+   ..+++++++...++....... .+.+...+....+|.+.+.+           ..+.+... 
T Consensus       270 ~~~~---~~~~~~~~---~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~-----------~~g~~~~~-  331 (513)
T KOG0254|consen  270 KLLV---EAEVAEGK---ASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFK-----------SAGLKSDT-  331 (513)
T ss_pred             HHHH---hhhccccc---ccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHH-----------hcCCCCch-
Confidence            0000   00000000   035555554444544433333 33333333333334443331           22333332 


Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhc-------------hhHHHHHHHHHHHHhhhh
Q 011416          332 YIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQ-------------SNILTTGLLFGARMCVMG  398 (486)
Q Consensus       332 ~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~  398 (486)
                      .......++..+++.+++..+.||+|||+.++.+...+.++++++....             .........+....+..+
T Consensus       332 ~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g  411 (513)
T KOG0254|consen  332 FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIG  411 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcc
Confidence            5666777888889999999999999999999999999999888776511             112223333344455566


Q ss_pred             hhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-HHhcccccccCCCc
Q 011416          399 AFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSIL-SVMLIPFETKGQEL  477 (486)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  477 (486)
                      ..++.+.+.+|.+|.+.|+.+.++....+++.+.+-......+.+..+....|..+++++.+..+ ..+.+.||+|+++.
T Consensus       412 ~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sl  491 (513)
T KOG0254|consen  412 WGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTL  491 (513)
T ss_pred             cccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcH
Confidence            67888899999999999999999999999988888877776666665545667777777777777 78888999999998


Q ss_pred             ccccc
Q 011416          478 SDTVD  482 (486)
Q Consensus       478 ~~~~~  482 (486)
                      +|.++
T Consensus       492 eei~~  496 (513)
T KOG0254|consen  492 EEINE  496 (513)
T ss_pred             HHHHH
Confidence            87654

>PRK03633 putative MFS family transporter protein; Provisional

Probab=100.00  E-value=3.1e-33  Score=263.86  Aligned_cols=360  Identities=15%  Similarity=0.129  Sum_probs=264.8

Q ss_pred             HHHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhh
Q 011416           27 LAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLL  106 (486)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~  106 (486)
                      +..++++.++.........+.+|.+.+++|.|..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~   87 (381)
T PRK03633          8 VLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAG   87 (381)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556777888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHhH
Q 011416          107 SSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSS  185 (486)
Q Consensus       107 ~~~a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~f~~~~  185 (486)
                      +++++|++.+++.|+++|++.+.. +...+.+.+..++++|+++++....+.++|..+|+.+++.+.+...|...+.. +
T Consensus        88 ~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~-~  166 (381)
T PRK03633         88 LGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWVT-G  166 (381)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHH-H
Confidence            999999999999999999999887 66667777888899999999999999999999999999998765444433332 2


Q ss_pred             HHHHHHH-HHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCCCCcc
Q 011416          186 IPSFILL-AFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTT  264 (486)
Q Consensus       186 ~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (486)
                      ....... +.....+++++      ++++                                                   
T Consensus       167 ~~~~~~~~~~~~~~~~~~~------~~~~---------------------------------------------------  189 (381)
T PRK03633        167 LVLAAILPLLFTRILNQQA------ENHD---------------------------------------------------  189 (381)
T ss_pred             HHHHHHHHHHHhcccCCCC------CCCC---------------------------------------------------
Confidence            2222111 11111111100      0000                                                   


Q ss_pred             cCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHH
Q 011416          265 EGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIP  344 (486)
Q Consensus       265 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  344 (486)
                           ..+.++.++++..+......+.   ....+.....+.|.+.           ++.+.++...+.......++.++
T Consensus       190 -----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~lp~~~-----------~~~g~s~~~~g~~~~~~~~~~~~  250 (381)
T PRK03633        190 -----STSIWPMLKLRQARLGVNGCII---SGIVLGSLYGLMPLYL-----------NHQGMSDASIGFWMALLVSAGIL  250 (381)
T ss_pred             -----CCCHHHHHHhcchHHHHHHHHH---HHHHHHHHHHHHHHHH-----------HHcCCCHHHHHHHHHHHHHHHHH
Confidence                 0012222333322221111111   1112222223344333           23478888888888888999999


Q ss_pred             HHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHH
Q 011416          345 GLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAAN  424 (486)
Q Consensus       345 ~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  424 (486)
                      +++..|++.||+++|+.+..+..+.+++.+.+.  .. ........+.+.+.....|...+...|..|+++++...+..+
T Consensus       251 ~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~~-~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  327 (381)
T PRK03633        251 GQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--SQ-AAMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALL  327 (381)
T ss_pred             HHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--hh-HHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            999999999999999998888777776655443  11 122233444555556677888888899998888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHh
Q 011416          425 AMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVM  466 (486)
Q Consensus       425 ~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  466 (486)
                      ...++|..++|.+.|++.|+.++...|.+.+.+.++..+..+
T Consensus       328 ~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~  369 (381)
T PRK03633        328 LSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLL  369 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence            888999999999999999999988888887777766554443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=100.00  E-value=2.5e-33  Score=274.20  Aligned_cols=391  Identities=15%  Similarity=0.115  Sum_probs=282.2

Q ss_pred             HHHHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhh
Q 011416           26 VLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGL  105 (486)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~  105 (486)
                      .+..++++.+...++....++..|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||+++..+.++.+++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~   82 (485)
T TIGR00711         3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSL   82 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            45667788889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHh
Q 011416          106 LSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLS  184 (486)
Q Consensus       106 ~~~~a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~f~~~  184 (486)
                      ++++++|++.+++.|+++|++.+.. +...+++.|++|+++|+++++++..+..+|..++|.+++.+.++.+||+.|++.
T Consensus        83 ~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~  162 (485)
T TIGR00711        83 LCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLIN  162 (485)
T ss_pred             HHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhh
Confidence            9999999999999999999999988 778899999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHH-HhhccCCCchhhhhcCChHHHHHHHHH-----H-HH-hcCCCCCCchhhhccccCCCCCCCCccchhhcc
Q 011416          185 SIPSFILLA-FLGFQPESPRYLCLKGRTAEAHRALEK-----I-AQ-VNKTKLPNGKLVARRSTLPTGERAPPELVHLLS  256 (486)
Q Consensus       185 ~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~-----~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (486)
                      +.+.++..+ ..+++||+++.  .+++.+........     . .. ....+.+.             ...+........
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~  227 (485)
T TIGR00711       163 VPIGIIVVVVAFFILPRDKPA--ASENFDFLGLLLLSVGLGSLLYGLSEGPERGW-------------FDSNEILILSIT  227 (485)
T ss_pred             hHHHHHHHHHHHHHcCCcccc--ccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCC-------------CCchHHHHHHHH
Confidence            877766544 34455664331  11111111110000     0 00 00000000             000000000000


Q ss_pred             c-----CCCCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchh
Q 011416          257 S-----NGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANL  331 (486)
Q Consensus       257 ~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (486)
                      .     ....++.+.+++..+.+ +++++....   .....+...+.++....+.|.+.+          +..|.++.++
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~p~~~~----------~~~g~s~~~~  293 (485)
T TIGR00711       228 GLVAIIAFVVWELTDDNPLVDLR-LFKYRNFTI---GCVYMSLLGLGLYGSFYLLPLYLQ----------QVLGYTALQA  293 (485)
T ss_pred             HHHHHHHHHHHHHcCCCCccCHH-HHcCCChHH---HHHHHHHHHHHHHHHHHHHHHHHH----------HhcCCCHHHH
Confidence            0     00000000011111222 333332222   222223333344444444454431          2347888999


Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhh----hchhHHHHHHHHHHHHhhhhhhhhHhhhc
Q 011416          332 YIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT----YQSNILTTGLLFGARMCVMGAFTVSLIYA  407 (486)
Q Consensus       332 ~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (486)
                      +.......++.+++.++.|++.||++||+.+..+..+.+++...+..    ..+.+......++.+++.+...+......
T Consensus       294 g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~  373 (485)
T TIGR00711       294 GLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIA  373 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998888888877776652    12334445556777888877777777777


Q ss_pred             cccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011416          408 AEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANC  445 (486)
Q Consensus       408 ~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~  445 (486)
                      .+..|+++++++.|+.+...++|+.+++.+.+.+.++.
T Consensus       374 ~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~~  411 (485)
T TIGR00711       374 LSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTNR  411 (485)
T ss_pred             HhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88899999999999999999999999999999998753

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00899 2A0120 sugar efflux transporter

Probab=100.00  E-value=5.3e-33  Score=262.75  Aligned_cols=364  Identities=15%  Similarity=0.113  Sum_probs=265.6

Q ss_pred             HHHHHHHhhHhhhhchhch-hhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHH-HHHHHHHhhhhhhc
Q 011416           32 LGWVAEAMEIMILSFVGPT-VKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLG-EALVTAGAGLLSSF  109 (486)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~-~~~~~~~~~~~~~~  109 (486)
                      +.+++..+......+.+|. +.+++|.|..+.|++.+++.+...+.+++.|+++||+||||.++. +..+.+++.+++++
T Consensus         4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~   83 (375)
T TIGR00899         4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAW   83 (375)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHh
Confidence            3456677777777787876 578899999999999999999999999999999999999887654 56666777788899


Q ss_pred             CCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHH--HHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHhHH
Q 011416          110 SPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMW--MVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSI  186 (486)
Q Consensus       110 a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~f~~~~~  186 (486)
                      ++|++.+++.|++.|.+.+.. +...++..|+.++++|++.  .+....+.++|.++++++++.+.+..+||+.|++.++
T Consensus        84 ~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~  163 (375)
T TIGR00899        84 NRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAAL  163 (375)
T ss_pred             cchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHH
Confidence            999999999999998877766 6666778888887777654  6888888999999999999999999999999999988


Q ss_pred             HHHHHHHH-hhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCCCCccc
Q 011416          187 PSFILLAF-LGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTE  265 (486)
Q Consensus       187 ~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (486)
                      +.++..+. ++++||+|++...+++    ++                                                 
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~-------------------------------------------------  190 (375)
T TIGR00899       164 AFVLCGVLVWLFLPSYPRGAPGALT----RL-------------------------------------------------  190 (375)
T ss_pred             HHHHHHHHHHHhCCCcccCcccccC----cc-------------------------------------------------
Confidence            77765444 4557876542100000    00                                                 


Q ss_pred             CCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHH
Q 011416          266 GKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPG  345 (486)
Q Consensus       266 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  345 (486)
                            +.++.++++..+...........   .......+.+.+.          .++.+.++.+.+.......+..+++
T Consensus       191 ------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~----------~~~~g~~~~~~g~~~~~~~~~~~~~  251 (375)
T TIGR00899       191 ------EVRGLLASRDTRLLFVACTLMWG---CNILYIINMPLLI----------IHELGLPDKLAGLMMGTAAGLEIPF  251 (375)
T ss_pred             ------hhhhhhcCcchHHHHHHHHHHHH---HHHHHHhhhHHHH----------HHHcCCCHHHHHHHHHHHHHHHHHH
Confidence                  11112222222222221111111   1111111222221          1234677788887777777778888


Q ss_pred             HHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHH
Q 011416          346 LLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANA  425 (486)
Q Consensus       346 ~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  425 (486)
                      .++.|++.||++||+.+..+.+...+....+...++.+.......+.+++.+...+....+..|..|++ ++++.++.+.
T Consensus       252 ~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~  330 (375)
T TIGR00899       252 MLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGR-AGAATTLYTN  330 (375)
T ss_pred             HHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-hhHHHHHHHH
Confidence            999999999999999888777666555555444555555555666667777777788888888888764 6799999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhcc
Q 011416          426 MGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLI  468 (486)
Q Consensus       426 ~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  468 (486)
                      ..++|..++|.+.|.+.+..|+...+.+.+++.+++.++....
T Consensus       331 ~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  373 (375)
T TIGR00899       331 TGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLI  373 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhee
Confidence            9999999999999999999999888888888777776665443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=100.00  E-value=6.7e-33  Score=263.09  Aligned_cols=346  Identities=17%  Similarity=0.197  Sum_probs=258.6

Q ss_pred             HHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhh
Q 011416           28 AYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLS  107 (486)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~  107 (486)
                      ..+.+..+..........+..|.+.+++|.|..+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~   87 (385)
T TIGR00710         8 LLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGL   87 (385)
T ss_pred             HHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHH
Confidence            33334446666777888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHhHH
Q 011416          108 SFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSI  186 (486)
Q Consensus       108 ~~a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~f~~~~~  186 (486)
                      .++++++.+++.|++.|++.+.. +...+++.|++|+++|++++++.+....+|..+++.+++.+.+..+||..|++.++
T Consensus        88 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~  167 (385)
T TIGR00710        88 ALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSL  167 (385)
T ss_pred             HHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            99999999999999999999988 77778999999999999999999999999999999999999998999999998887


Q ss_pred             HHHHHHHH-hhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCCCCccc
Q 011416          187 PSFILLAF-LGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTE  265 (486)
Q Consensus       187 ~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (486)
                      ..++..+. .++.||+++...   + ++.++..                                               
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~-----------------------------------------------  196 (385)
T TIGR00710       168 AGILLSALIFFILPETLPYEA---R-IQISTYF-----------------------------------------------  196 (385)
T ss_pred             HHHHHHHHHHHhCCCCCCCcc---c-CCHHHHH-----------------------------------------------
Confidence            77665443 445566543110   0 0000000                                               


Q ss_pred             CCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHH
Q 011416          266 GKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPG  345 (486)
Q Consensus       266 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  345 (486)
                           ..+++.++++..+....   ........++....+.|.+.          .+..+.++.+.+.......++.+++
T Consensus       197 -----~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----------~~~~g~~~~~~g~~~~~~~~~~~~~  258 (385)
T TIGR00710       197 -----ETFLLLLKSKMFWGYAL---IYGASFGGFFAFFSGAPFVY----------IDIMGVSPSVFGLLFALNIIAMIFG  258 (385)
T ss_pred             -----HHHHHHHcCchhHHHHH---HHHHHHHHHHHHHHcChHHH----------HHHcCCCHHHHHHHHHHHHHHHHHH
Confidence                 02333333333222221   11122222233333333222          1245788888999999999999999


Q ss_pred             HHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhh-----chhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHh
Q 011416          346 LLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY-----QSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGA  420 (486)
Q Consensus       346 ~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (486)
                      .++.+++.||+++|+.+..+..+..++.+.+...     ...........+.+++.+...+.......|..| +.++++.
T Consensus       259 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~  337 (385)
T TIGR00710       259 GFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTAS  337 (385)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHH
Confidence            9999999999999998887777766665554432     122333444556677777788888888888887 5689999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 011416          421 GAANAMGRIGGMVCPLVAVALVA  443 (486)
Q Consensus       421 g~~~~~~~~g~~~~~~i~g~l~~  443 (486)
                      ++.+.....++.+.+.+.+.+.+
T Consensus       338 ~~~~~~~~~~g~i~~~~~~~~~~  360 (385)
T TIGR00710       338 ALFGTLRLVLGAIVGYLVSLIHG  360 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccc
Confidence            99999988766666666664433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00897 2A0118 polyol permease family

Probab=100.00  E-value=1e-32  Score=261.97  Aligned_cols=367  Identities=13%  Similarity=0.038  Sum_probs=256.7

Q ss_pred             HHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhh---hc
Q 011416           33 GWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLS---SF  109 (486)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~---~~  109 (486)
                      +.++...........++.+.+++|.|.++.|++.+.+.+++.+++++.|+++||+|||+++..+..+.+++++++   +.
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~  100 (402)
T TIGR00897        21 GVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGL  100 (402)
T ss_pred             HHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence            333333333333345566778999999999999999999999999999999999999999999999999887654   23


Q ss_pred             -CCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCcHHHHHHhHH
Q 011416          110 -SPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGS-VSEAIGAWIIMPRLDWRWLLGLSSI  186 (486)
Q Consensus       110 -a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~-~i~~~l~~~l~~~~~w~~~f~~~~~  186 (486)
                       .++++.+++.|++.|++.+.. +...+++.+++|+++|++++|+.+.+.++|. ++++.+++.+.+..||+..++....
T Consensus       101 ~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~  180 (402)
T TIGR00897       101 GHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALA  180 (402)
T ss_pred             cCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence             358889999999999998776 5666788899999999999999999999997 6899999998888897766655444


Q ss_pred             HHHHHHHH-hhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCCCCccc
Q 011416          187 PSFILLAF-LGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTE  265 (486)
Q Consensus       187 ~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (486)
                      ..++..+. .++.++.++.. .++++++.+                                                  
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--------------------------------------------------  209 (402)
T TIGR00897       181 FVLTGGVIALFSNKDIFTPQ-HMQTREKFS--------------------------------------------------  209 (402)
T ss_pred             HHHHHHHHHHhccCCCCCcc-cccCCcchh--------------------------------------------------
Confidence            33333222 33334322100 000000000                                                  


Q ss_pred             CCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHH
Q 011416          266 GKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPG  345 (486)
Q Consensus       266 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  345 (486)
                        +....++.+++++.   ++......++....+++...+.|.+.           ++.|.+..+.+.......++.+++
T Consensus       210 --~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~p~~~-----------~~~g~s~~~~~~~~~~~~~~~~ig  273 (402)
T TIGR00897       210 --ELGKAATILFTNPN---VLLGGMVRIINTIGLFGFAVFLPMFV-----------AELGFSTSEWLQIWGTFFFTNIVF  273 (402)
T ss_pred             --hHHHHHHHHHcChh---HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHcCCChhHHHHHHHHHHHHHHHH
Confidence              00012344444443   23333334444555566666666554           345788888888888889999999


Q ss_pred             HHHHHHHHHHhchhHHHH-HHHHHHHHHHHHHhh-----hchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhH
Q 011416          346 LLLAAILVDTAGRKLSIT-IMFTLSCLFLLPLVT-----YQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTG  419 (486)
Q Consensus       346 ~~~~g~l~dr~g~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (486)
                      .+..|+++||++||+... .+.+...++.+.+..     .++.+...+..++.+++.+...+ ......|..| ++|+++
T Consensus       274 ~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~-~~~g~~  351 (402)
T TIGR00897       274 NVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVP-LAAVFPTLAP-KHKGAA  351 (402)
T ss_pred             HHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCc-chhHHH
Confidence            999999999999887653 233333332222221     12344445556666666665544 3455566554 679999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhcc
Q 011416          420 AGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLI  468 (486)
Q Consensus       420 ~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  468 (486)
                      .|+.+...++++.++|.+.|.+.|..|+...+++.+++.+++.+...+.
T Consensus       352 ~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~~  400 (402)
T TIGR00897       352 MSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAFI  400 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999998888887777666554

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=100.00  E-value=1.6e-34  Score=273.72  Aligned_cols=369  Identities=18%  Similarity=0.195  Sum_probs=263.5

Q ss_pred             HHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcCC
Q 011416           32 LGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSP  111 (486)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a~  111 (486)
                      +.++..+.++..+++..|.+.+++|+|..+.|++.+++.++..+++++.|+++||+|||+++..+.++.+++.+++++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~   81 (379)
T TIGR00881         2 IGYAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST   81 (379)
T ss_pred             chhhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh
Confidence            45677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCcHHHHHHhHHHHH
Q 011416          112 NYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEA-IGAWIIMPRLDWRWLLGLSSIPSF  189 (486)
Q Consensus       112 ~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~-~l~~~l~~~~~w~~~f~~~~~~~~  189 (486)
                      +++.+++.|++.|++.+.. +...+++.|++|+++|++++++.+.+..+|..+++ .++..+.+..+||+.|++.+++.+
T Consensus        82 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (379)
T TIGR00881        82 SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAI  161 (379)
T ss_pred             hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence            9999999999999999988 77888999999999999999999999999999999 577777788899999998887776


Q ss_pred             HH-HHHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCCCCcccCCC
Q 011416          190 IL-LAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKS  268 (486)
Q Consensus       190 ~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (486)
                      +. ++..++.+|+|+....++.+++              +.+          +.++++             +.++++.+.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~----------~~~~~~-------------~~~~~~~~~  204 (379)
T TIGR00881       162 IVSLICFLLLRDSPQSCGLPPAEEM--------------PNE----------EPDGDA-------------EKKEEELTK  204 (379)
T ss_pred             HHHHHHheeeCCCccccccCccccC--------------ccc----------cccccc-------------ccccccccc
Confidence            65 4445556665532100000000              000          000000             000000011


Q ss_pred             chhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHH
Q 011416          269 GLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLL  348 (486)
Q Consensus       269 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  348 (486)
                      .....+.+++++..+   ...+..+...........+.+.+.          .+..+.++.+.+.......++.+++.++
T Consensus       205 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~g~~~~~~~~~~~~~~~~~~~~~~~  271 (379)
T TIGR00881       205 KQIFLQYVLLNKVLW---YISLGYVFVYVVRTGILDWSPLYL----------TQEKGFSKEKASWAFTLYELGGLVGTLL  271 (379)
T ss_pred             hHHHHHHHHhcchHH---HHHHHHHHHHHHHHHHHHHHHHHH----------HHHhCCCHHHHHHHHHHHHHHcchhHHH
Confidence            111334444443322   223333333333344444444433          1234788888999999999999999999


Q ss_pred             HHHHHHHhc-hhH-HHHHHH-HHHHHHHHHHhh--hchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHH
Q 011416          349 AAILVDTAG-RKL-SITIMF-TLSCLFLLPLVT--YQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAA  423 (486)
Q Consensus       349 ~g~l~dr~g-~~~-~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  423 (486)
                      .+++.||.. +|+ ...... ....++......  ..+.+......++.+....+..+.......|..|++.|+++.|+.
T Consensus       272 ~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~  351 (379)
T TIGR00881       272 AGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFV  351 (379)
T ss_pred             HHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHH
Confidence            999999863 332 222221 222222222222  223333444445555555555666677889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccchH
Q 011416          424 NAMGRIGGMVCPLVAVALVANCHQMTA  450 (486)
Q Consensus       424 ~~~~~~g~~~~~~i~g~l~~~~g~~~~  450 (486)
                      +...++|+.++|.+.|.+.|..|+...
T Consensus       352 ~~~~~~g~~~~~~~~g~l~~~~g~~~~  378 (379)
T TIGR00881       352 GFFAYLGGILAGLPLGYLADGFGWAGA  378 (379)
T ss_pred             HHhhhhhhhhhhhhHHHHHHhhccccc
Confidence            999999999999999999999887654

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=100.00  E-value=8.2e-33  Score=261.08  Aligned_cols=370  Identities=12%  Similarity=-0.023  Sum_probs=267.6

Q ss_pred             HHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhc
Q 011416           30 AGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSF  109 (486)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~  109 (486)
                      .+++.++..+.........+.+.++++.+..+.+++.+.+.+++.++++++|+++||+|||++++.+.++.+++++++.+
T Consensus         8 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~   87 (393)
T PRK11195          8 IMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLF   87 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHH
Confidence            45556666665555556666778999999999999999999999999999999999999999999999999998888777


Q ss_pred             CCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHhHHHH
Q 011416          110 SPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPS  188 (486)
Q Consensus       110 a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~f~~~~~~~  188 (486)
                      +.+.   ++.|+++|++.+.. |...+++.|++|+++|++++|+.+...++|.++||.+++.+.+. .|+..+.+.+...
T Consensus        88 ~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~  163 (393)
T PRK11195         88 GIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIY  163 (393)
T ss_pred             HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            6664   78899999999988 88889999999999999999999999999999999999999875 4887777766555


Q ss_pred             HHHHHHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCCCCcccCCC
Q 011416          189 FILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKS  268 (486)
Q Consensus       189 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (486)
                      ++..+..+.+||+|++...  ++++..+..++..                                              
T Consensus       164 ~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~----------------------------------------------  195 (393)
T PRK11195        164 LLAALFNLFIPRLGARRPG--QSWNPIALLRDFF----------------------------------------------  195 (393)
T ss_pred             HHHHHHHhcCCCCcccccc--cCCCHHHHHHHHH----------------------------------------------
Confidence            5455556677876532111  1111111111100                                              


Q ss_pred             chhhhHhhhchhhHHHHHHH-HHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHH
Q 011416          269 GLSLFLMLFSSKLARTTILL-WLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLL  347 (486)
Q Consensus       269 ~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  347 (486)
                        ..++.+++++..+..... .+.+.+.....+....+.+..              .|.++.+.+......+++.+++.+
T Consensus       196 --~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------lg~s~~~~G~~~~~~~~g~i~g~~  259 (393)
T PRK11195        196 --HACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVA--------------LGITLNQPAYLQAVVAIGIAVGAG  259 (393)
T ss_pred             --HHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------cCCChhHHHHHHHHHHHHHHHHHH
Confidence              023344444443333222 222222233333333444433              378888999999999999999999


Q ss_pred             HHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccc-hhhHhHHHHHH
Q 011416          348 LAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV-RSTGAGAANAM  426 (486)
Q Consensus       348 ~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~  426 (486)
                      ..+++.||.++++.+..+.. .++....+...++.+......++.|++.+...+...+...+..|++. +|++.++.+..
T Consensus       260 ~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~  338 (393)
T PRK11195        260 AAARLVTLETVLRVLPAGIL-MGLVVLLMALQHSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFN  338 (393)
T ss_pred             HHHHHhcCCcccchHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHH
Confidence            99999999988887776643 33433344444455555556667778777777777888888766654 79999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhccc
Q 011416          427 GRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIP  469 (486)
Q Consensus       427 ~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  469 (486)
                      .+++..++..+.+.+ +..|-...+.+.+...++++.+.+.++
T Consensus       339 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (393)
T PRK11195        339 ENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMALLWR  380 (393)
T ss_pred             HHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999855 677877777766666666655555444

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.9e-35  Score=261.08  Aligned_cols=433  Identities=22%  Similarity=0.308  Sum_probs=319.3

Q ss_pred             CchHHHHHHHHHHHHHHHHhhHhhhhchhchhhhhc--------CCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchH
Q 011416           20 GKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEW--------NLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRM   91 (486)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~   91 (486)
                      .+++...+.+...+.+.+.+|..+++.+.|.+...+        ++++...+.+..+..+|..++|++.|++.||+|||+
T Consensus        36 qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~  115 (538)
T KOG0252|consen   36 QWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKK  115 (538)
T ss_pred             hHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Confidence            566677888888999999999999999988876554        245667789999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhhcCC-------CHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHH
Q 011416           92 GFLGEALVTAGAGLLSSFSP-------NYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS  163 (486)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~a~-------~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i  163 (486)
                      ++...++++.+++++++++.       -.+++...|++.|+|.|+- |...+..+|...+++||...+.+.+..++|.+.
T Consensus       116 vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gila  195 (538)
T KOG0252|consen  116 VYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILA  195 (538)
T ss_pred             hhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhh
Confidence            99999999999999888763       1567899999999999999 555567779999999999999999999999888


Q ss_pred             HHHHHHHHhcC---------------CCcHHHHHHhHHHHHHHHHHhhccCCCchhhhhcC-ChHHHHHHHHHHHHhcCC
Q 011416          164 EAIGAWIIMPR---------------LDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKG-RTAEAHRALEKIAQVNKT  227 (486)
Q Consensus       164 ~~~l~~~l~~~---------------~~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~  227 (486)
                      |.+++..+..-               .=||..+.+.+++.+..+...+.+||++++..... +.+.+.+..+   +    
T Consensus       196 G~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~---k----  268 (538)
T KOG0252|consen  196 GGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGDMK---K----  268 (538)
T ss_pred             ccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhccc---c----
Confidence            88877665321               12999999999999999999999999998763222 2121111000   0    


Q ss_pred             CCCCchhhhccccCCCCCCCCccchhhcccCCCCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011416          228 KLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLIS  307 (486)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (486)
                      ..+.         +.++         .  +......+..++....+...+..++.+.++..+..|+...+.+|....++.
T Consensus       269 ~~~~---------~~~~---------~--~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s  328 (538)
T KOG0252|consen  269 VLSV---------DIEA---------E--STAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQS  328 (538)
T ss_pred             cccc---------ccch---------h--hccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHH
Confidence            0000         0000         0  000111111122222344444444667788888899999999999999998


Q ss_pred             hhccccccCCCCccccCCCCC-chhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhch-----
Q 011416          308 ELSSLDTRCRSPLMFSHHPQD-ANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQS-----  381 (486)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~-----  381 (486)
                      .+.+...+.+.....   ... ..+-....+...+.++|..+...++|++||++..+.+++++++..+.+....+     
T Consensus       329 ~I~~~ig~~~~~~~~---~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~  405 (538)
T KOG0252|consen  329 VIFSAIGVIPSANTY---HELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENT  405 (538)
T ss_pred             HHHHhhccCCCcchH---HHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCccccccc
Confidence            887544433222111   000 01112223333444557778888999999999999999999999998887444     


Q ss_pred             hHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHH-----hhccchHHHHHHH
Q 011416          382 NILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVA-----NCHQMTAVVLLVV  456 (486)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~-----~~g~~~~~~~~~~  456 (486)
                      ....+...+...++..+.......+.+|.+|.+.|++..|+..+.+..|++++...+.++.+     ..+....++++++
T Consensus       406 ~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~  485 (538)
T KOG0252|consen  406 IGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAG  485 (538)
T ss_pred             CceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHH
Confidence            12223333444556677778888999999999999999999999999999999999999999     7788899999999


Q ss_pred             HHHHHHHHHhcccccccCCCccccccc
Q 011416          457 VIVTSILSVMLIPFETKGQELSDTVDF  483 (486)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  483 (486)
                      +++++.+..+++. |++++..+|..+|
T Consensus       486 ~~~~gi~~T~l~p-Etk~~~leei~~e  511 (538)
T KOG0252|consen  486 CMLLGILFTLLIP-ETKGKSLEEISNE  511 (538)
T ss_pred             HHHHhHheeEEee-cccccCHHHhcCh
Confidence            9999888877776 9999988876544

>PRK10133 L-fucose transporter; Provisional

Probab=100.00  E-value=1.4e-32  Score=262.10  Aligned_cols=373  Identities=12%  Similarity=0.044  Sum_probs=267.9

Q ss_pred             chHHHHHHHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHH
Q 011416           21 KYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVT  100 (486)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~  100 (486)
                      +.....+..+.+.++...+.+...++..|.+++++|+|+.+.|++.+.+.+++.+++++.|++.||+|||+++..+..++
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~  101 (438)
T PRK10133         22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY  101 (438)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            44555666777778888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhh---hcCCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc-C-
Q 011416          101 AGAGLLS---SFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMP-R-  174 (486)
Q Consensus       101 ~~~~~~~---~~a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~-~-  174 (486)
                      +++++++   .+++|++.++++|+++|+|.|.. +...+++.|+.++++|.+.+++.+...++|..+++.++..+.. . 
T Consensus       102 ~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~  181 (438)
T PRK10133        102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV  181 (438)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            9999875   57899999999999999999988 7777888888777777778999999999999999999876541 0 


Q ss_pred             ------------------------CCcHHHHHHhH-HHHHHHHHH-hhccCCCchhhhhcCChHHHHHHHHHHHHhcCCC
Q 011416          175 ------------------------LDWRWLLGLSS-IPSFILLAF-LGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTK  228 (486)
Q Consensus       175 ------------------------~~w~~~f~~~~-~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (486)
                                              .+||.+|+... +..++..+. ....||.+..    ++.++..             
T Consensus       182 ~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~----~~~~~~~-------------  244 (438)
T PRK10133        182 PHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD----NHSDAKQ-------------  244 (438)
T ss_pred             cccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc----ccccccc-------------
Confidence                                    25666665433 333232222 2333432210    0000000             


Q ss_pred             CCCchhhhccccCCCCCCCCccchhhcccCCCCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011416          229 LPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISE  308 (486)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (486)
                                                            .+.....+++++++..+......   ++.....+....+.+.
T Consensus       245 --------------------------------------~~~~~~~~~ll~~~~~~~~~l~~---~~~~~~~~~~~~~~~~  283 (438)
T PRK10133        245 --------------------------------------GSFSASLSRLARIRHWRWAVLAQ---FCYVGAQTACWSYLIR  283 (438)
T ss_pred             --------------------------------------cchhhhHHHHHhCchHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence                                                  00001233444444333322222   2222222222233332


Q ss_pred             hccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHH
Q 011416          309 LSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGL  388 (486)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (486)
                      +.         ..+..|.++.+++.......++.++++++++++.||+++|+++..+..+.++.+++....++. .....
T Consensus       284 ~l---------~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~  353 (438)
T PRK10133        284 YA---------VEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGH-VGLIA  353 (438)
T ss_pred             HH---------hhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCCh-HHHHH
Confidence            21         012458999999999999999999999999999999999999888877766655554443333 33455


Q ss_pred             HHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHH
Q 011416          389 LFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH-QMTAVVLLVVVIVTSIL  463 (486)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g-~~~~~~~~~~~~~~~~~  463 (486)
                      ..+.+++.+..+|..++...+..|++ .+++.++.. ...+|+.++|.+.|.+.|..| ....+++...+.+....
T Consensus       354 ~~l~glg~~~i~P~~~s~a~~~~~~~-~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~  427 (438)
T PRK10133        354 LTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI  427 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccchh-hccchhHHh-HHhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence            67789999999999999999998754 678888876 455789999999999999887 45556544444443333

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=100.00  E-value=1.1e-33  Score=265.05  Aligned_cols=343  Identities=24%  Similarity=0.312  Sum_probs=262.7

Q ss_pred             HHHHHHHHhhHhhhhchhc-hhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhc
Q 011416           31 GLGWVAEAMEIMILSFVGP-TVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSF  109 (486)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~  109 (486)
                      +++.++..++.....+..| .+.+++|.|..+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++..+
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~   81 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAF   81 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhh
Confidence            4567788888888999999 899999999999999999999999999999999999999999999999999999666667


Q ss_pred             CCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHhHHHH
Q 011416          110 SPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPS  188 (486)
Q Consensus       110 a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~f~~~~~~~  188 (486)
                      ++|++.+++.|++.|++.+.. +...+++.|++|+++|++++++.+.+.++|.+++|.+++.+.+..+||+.|++.+++.
T Consensus        82 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~  161 (352)
T PF07690_consen   82 ASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILS  161 (352)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHH
T ss_pred             hhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchh
Confidence            788889999999999999888 7888999999999999999999999999999999999999998899999999999988


Q ss_pred             HHHHHH-hhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCCCCcccCC
Q 011416          189 FILLAF-LGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGK  267 (486)
Q Consensus       189 ~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (486)
                      ++..++ ..+++++++....+++.++.+                                                 +.+
T Consensus       162 ~~~~il~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------~~~  192 (352)
T PF07690_consen  162 LIAAILFILFLPEPPPPRERESPKESES-------------------------------------------------KKP  192 (352)
T ss_dssp             HHHHHHHHCCC---STTTT--SSTTTT---------------------------------------------------HH
T ss_pred             hhhhhhHhhhhhhccccccccccccccc-------------------------------------------------ccc
Confidence            887553 345555443221111111100                                                 000


Q ss_pred             Cchh-hhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCC-CchhHHHHHHHHhhHHHH
Q 011416          268 SGLS-LFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQ-DANLYIDEFITSLAEIPG  345 (486)
Q Consensus       268 ~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~  345 (486)
                      .+.. .++.+++++..+   ......+...+.++....+.+.+.          .+.++.+ ..+.+.......+..+++
T Consensus       193 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l----------~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (352)
T PF07690_consen  193 KPLKPGFKSLFKNPVLW---ILLIAFFLFFFVFSGFSFFLPLYL----------QEVLGFSGPSQAGLLFSIFGIVGIIG  259 (352)
T ss_dssp             HCCCH-CTHHHHHHCCH---HHHHHHHHHHHHHHHHHHHHHHHC----------CHHHHCCTHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccchhh---hhhhhhhHHHHHHHHhhcccchhh----------hhccCCCHHHHHHHHHHHHHHHHHHH
Confidence            0000 144444444332   122222233334444555555442          2334677 678888889999999999


Q ss_pred             HHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhh---hchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHH
Q 011416          346 LLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT---YQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGA  422 (486)
Q Consensus       346 ~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  422 (486)
                      .++.+++.||+++++..........+..+.+..   ..+........++.+++.+...+...++..+..|++++|++.|+
T Consensus       260 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~  339 (352)
T PF07690_consen  260 SLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGL  339 (352)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHH
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            999999999999877776666666665555544   33445566677778888888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 011416          423 ANAMGRIGGMVCP  435 (486)
Q Consensus       423 ~~~~~~~g~~~~~  435 (486)
                      .+...++++.++|
T Consensus       340 ~~~~~~~~~~igP  352 (352)
T PF07690_consen  340 FNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCC
Confidence            9999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=100.00  E-value=4.4e-32  Score=257.47  Aligned_cols=352  Identities=15%  Similarity=0.063  Sum_probs=246.0

Q ss_pred             HHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhc
Q 011416           30 AGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSF  109 (486)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~  109 (486)
                      ..+..+..........+.+|.+.+++|.+..+.++..+.+.++..+++++.|+++||+|||+++..+.++.+++.+++.+
T Consensus         8 ~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~   87 (392)
T PRK10473          8 SFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSL   87 (392)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence            33444555555566668899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHhHHHH
Q 011416          110 SPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPS  188 (486)
Q Consensus       110 a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~f~~~~~~~  188 (486)
                      ++|++.+++.|+++|++.+.. +...+++.|++|+++|+++.++.+....+|..++|.+++.+.+..+||+.|++.+++.
T Consensus        88 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~  167 (392)
T PRK10473         88 AETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMG  167 (392)
T ss_pred             hCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHH
Confidence            999999999999999998887 6777899999999999999999999999999999999999888899999999988877


Q ss_pred             HHHHH-HhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCCCCcccCC
Q 011416          189 FILLA-FLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGK  267 (486)
Q Consensus       189 ~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (486)
                      ++..+ ...++||+++..  +++.+...                                                    
T Consensus       168 ~i~~~~~~~~~~~~~~~~--~~~~~~~~----------------------------------------------------  193 (392)
T PRK10473        168 ILVLLLSLFILKETRPAR--APAASSKP----------------------------------------------------  193 (392)
T ss_pred             HHHHHHHHHHcCCCCCcc--cCCccchH----------------------------------------------------
Confidence            76544 345566653211  00000000                                                    


Q ss_pred             CchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHH
Q 011416          268 SGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLL  347 (486)
Q Consensus       268 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  347 (486)
                         ...++.++++...............   ......+.+.+.          .++.|.++.+.+......+++.+++.+
T Consensus       194 ---~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~----------~~~~g~~~~~~~~~~~~~~~~~i~~~~  257 (392)
T PRK10473        194 ---RENSESLLNRFFLSRLVITTLSVTV---ILTFVNTSPVLL----------MEQMGFSRGEYAIIMALTAGVSMTVSF  257 (392)
T ss_pred             ---HHHHHHHhCHHHHHHHHHHHHHHHH---HHHHHHhCHHHH----------HHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence               0111222222222211111111111   111111122111          123467888888888889999999999


Q ss_pred             HHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHHH
Q 011416          348 LAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMG  427 (486)
Q Consensus       348 ~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  427 (486)
                      +.+++.||+++|+.+..+..+..++.+.+....+.+.......+.+.+.+...+....  .+..|.++++   |......
T Consensus       258 ~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~--~~~~~~~~~~---g~~~~~~  332 (392)
T PRK10473        258 STPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVGFGVAMS--QALGPFSLRA---GVASSTL  332 (392)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--HHhccCcccc---cHHHHHH
Confidence            9999999999999998888877777766665444433333333333333333333322  3333443332   4444555


Q ss_pred             HHHHHHHHHHHHHHHHhhccchHHHHHHH
Q 011416          428 RIGGMVCPLVAVALVANCHQMTAVVLLVV  456 (486)
Q Consensus       428 ~~g~~~~~~i~g~l~~~~g~~~~~~~~~~  456 (486)
                      .++..+++.+.+++.+..|+.......+.
T Consensus       333 ~~~~~~g~~~~~~l~~~~g~~~~~~~~~~  361 (392)
T PRK10473        333 GIAQVCGSSLWIWLAAVLGISAWNMLIGI  361 (392)
T ss_pred             HHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence            67778888888888888777554444443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=100.00  E-value=1.2e-32  Score=258.04  Aligned_cols=346  Identities=27%  Similarity=0.361  Sum_probs=296.7

Q ss_pred             HHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhh
Q 011416           29 YAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSS  108 (486)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~  108 (486)
                      .+.+..+....+.....+..|.+.+++|.+..+.+++.+...++..+++++.|+++||+|||+.+..+..+..++.++..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~   82 (352)
T cd06174           3 LLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLA   82 (352)
T ss_pred             HHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHH
Confidence            34566777888888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHhHHH
Q 011416          109 FSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIP  187 (486)
Q Consensus       109 ~a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~f~~~~~~  187 (486)
                      ++++++.+++.|++.|++.+.. +...+++.|++|+++|++.+++.+...++|..+++.+++.+.+..+||+.+++.+++
T Consensus        83 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (352)
T cd06174          83 FASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAIL  162 (352)
T ss_pred             HhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            9999999999999999999988 777889999999999999999999999999999999999999989999999998887


Q ss_pred             HHHHHHHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCCCCcccCC
Q 011416          188 SFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGK  267 (486)
Q Consensus       188 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (486)
                      .++..+...+++                                                                    
T Consensus       163 ~~~~~~~~~~~~--------------------------------------------------------------------  174 (352)
T cd06174         163 GLLLALLLLFLL--------------------------------------------------------------------  174 (352)
T ss_pred             HHHHHHHHHHHH--------------------------------------------------------------------
Confidence            777655543332                                                                    


Q ss_pred             CchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHH
Q 011416          268 SGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLL  347 (486)
Q Consensus       268 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  347 (486)
                                     +.++......+...........+.+.+.+          +..+.+..+.+.......++.+++.+
T Consensus       175 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~i~~~  229 (352)
T cd06174         175 ---------------RLLLLLALAFFLLSFGYYGLLTYLPLYLQ----------EVLGLSAAEAGLLLSLFGLGGILGAL  229 (352)
T ss_pred             ---------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHH----------HhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence                           01111223333333444444444444431          12267888999999999999999999


Q ss_pred             HHHHHHHHhchhH-HHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHH
Q 011416          348 LAAILVDTAGRKL-SITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAM  426 (486)
Q Consensus       348 ~~g~l~dr~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  426 (486)
                      +.+++.||++||+ .+..+..+..++.+.+...++.+.......+.+++.+...+...++..|..|+++|++.+|+.+..
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (352)
T cd06174         230 LGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTF  309 (352)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHH
Confidence            9999999999999 898898888888888877777777778888899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhc
Q 011416          427 GRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVML  467 (486)
Q Consensus       427 ~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  467 (486)
                      .+++..++|.+.|.+.+..++...+.+.+++.+++.+..+.
T Consensus       310 ~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~~  350 (352)
T cd06174         310 GSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLL  350 (352)
T ss_pred             HHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhee
Confidence            99999999999999999889999999988888887766543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11043 putative transporter; Provisional

Probab=100.00  E-value=4.3e-32  Score=258.34  Aligned_cols=343  Identities=13%  Similarity=0.122  Sum_probs=255.8

Q ss_pred             HHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcC
Q 011416           31 GLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFS  110 (486)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a  110 (486)
                      .+...+..+....+.+..|.+.+++|.+.++.+++.+++.+++.++++++|+++||+|||+++..+..+.+++.+++.++
T Consensus        12 ~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~   91 (401)
T PRK11043         12 AGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV   91 (401)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh
Confidence            33345555667788888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHhHHHHH
Q 011416          111 PNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSF  189 (486)
Q Consensus       111 ~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~f~~~~~~~~  189 (486)
                      ++++.+++.|+++|++.+.. +...+++.|+++++++++..+.......+|..++|.+++.+.+..+||+.|++.+++.+
T Consensus        92 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~  171 (401)
T PRK11043         92 ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITL  171 (401)
T ss_pred             cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence            99999999999999998877 55667889999999999999999999999999999999999999999999999888777


Q ss_pred             HHHHHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCCCCcccCCCc
Q 011416          190 ILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSG  269 (486)
Q Consensus       190 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (486)
                      +..+..++++|+++.    ++.++.+                                                      
T Consensus       172 ~~~~~~~~~~~~~~~----~~~~~~~------------------------------------------------------  193 (401)
T PRK11043        172 LLILPTLRLKPSKKA----RKQSQDA------------------------------------------------------  193 (401)
T ss_pred             HHHHHHHHcCCCCCc----cccchHH------------------------------------------------------
Confidence            765555555554321    0000000                                                      


Q ss_pred             hhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHHH
Q 011416          270 LSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLA  349 (486)
Q Consensus       270 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  349 (486)
                       ..++++++++..+......   ......++....+.|.+.           ++.|.++.+.++......++.+++.++.
T Consensus       194 -~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~-----------~~~g~s~~~~g~~~~~~~~~~~~g~~~~  258 (401)
T PRK11043        194 -LTFKQLLKSKTYLGNVLIF---AACSAAFFAWLTGSPFIL-----------EQMGYSPADIGLSYVPQTIAFLVGGYGC  258 (401)
T ss_pred             -HHHHHHHcChhHHHHHHHH---HHHHHHHHHHHHHhHHHH-----------HHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence             0233334333322222211   112222233333344332           3357888888888888888889999999


Q ss_pred             HHHHHHhchhHHHHHHHHHHHHHHHHHh---h--hchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHH
Q 011416          350 AILVDTAGRKLSITIMFTLSCLFLLPLV---T--YQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAAN  424 (486)
Q Consensus       350 g~l~dr~g~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  424 (486)
                      +++.||+++|+.........+++.+.+.   .  .++.+.......+.+++.+..++.......+..| ++++++.|+.+
T Consensus       259 ~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~  337 (401)
T PRK11043        259 RAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQN  337 (401)
T ss_pred             HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHH
Confidence            9999999998876555444444333221   1  2233334444556677778888888887777776 56999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcc
Q 011416          425 AMGRIGGMVCPLVAVALVANCHQ  447 (486)
Q Consensus       425 ~~~~~g~~~~~~i~g~l~~~~g~  447 (486)
                      ..+..++..++.+.|.+.+....
T Consensus       338 ~~~~~~~~~~~~~~g~l~~~~~~  360 (401)
T PRK11043        338 TLQLGLCFLASLLVSALISTPLL  360 (401)
T ss_pred             HHHHHHHHHHHHHHHHccCCChh
Confidence            99999999999999988775433

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=100.00  E-value=6.8e-32  Score=256.35  Aligned_cols=362  Identities=15%  Similarity=0.034  Sum_probs=255.4

Q ss_pred             HHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcC
Q 011416           31 GLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFS  110 (486)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a  110 (486)
                      .+..+...+......+.+|.+.++++.+.++.++..+++.+++.++++++|+++||+|||+++..+.++++++.+++.++
T Consensus        22 ~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a  101 (413)
T PRK15403         22 ILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT  101 (413)
T ss_pred             HHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc
Confidence            34445567788899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHhHHHHH
Q 011416          111 PNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSF  189 (486)
Q Consensus       111 ~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~f~~~~~~~~  189 (486)
                      +|++.++++|+++|++.+.. +...+++.|++++++|++++++...+..+|..+||.+++.+.++.|||+.|++.+++.+
T Consensus       102 ~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~  181 (413)
T PRK15403        102 TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGL  181 (413)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            99999999999999998866 55567788999999999999999999999999999999999888999999999988877


Q ss_pred             HHHHH-hhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCCCCcccCCC
Q 011416          190 ILLAF-LGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKS  268 (486)
Q Consensus       190 ~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (486)
                      +..+. ++.+||+++.   ++++.+.++.                                                   
T Consensus       182 i~~~~~~~~lp~~~~~---~~~~~~~~~~---------------------------------------------------  207 (413)
T PRK15403        182 IAFVGLLLAMPETVKR---GAVPFSAKSV---------------------------------------------------  207 (413)
T ss_pred             HHHHHHHHhCCCCccc---cCCCCChHHH---------------------------------------------------
Confidence            76543 5557876431   1000000000                                                   


Q ss_pred             chhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHH
Q 011416          269 GLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLL  348 (486)
Q Consensus       269 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  348 (486)
                       ...++.+++++..+.   ...........++....+.|.+.          .+..|.++.+.++.......+.+++..+
T Consensus       208 -~~~~~~ll~~~~~~~---~~l~~~~~~~~~~~~~~~~P~~l----------~~~~g~s~~~~gl~~~~~~~~~~i~~~l  273 (413)
T PRK15403        208 -LRDFRNVFRNRLFLT---GAATLSLSYIPMMSWVAVSPVIL----------IDAGGMTTSQFAWTQVPVFGAVIVANAI  273 (413)
T ss_pred             -HHHHHHHHcCHHHHH---HHHHHHHHHHHHHHHHHhChHHH----------HHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence             013444555443332   22222333333344444444443          1234788888888887788888888888


Q ss_pred             HHHHHHHhchhHHHHHHHHHHHHHHHHHh-----hhchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHH
Q 011416          349 AAILVDTAGRKLSITIMFTLSCLFLLPLV-----TYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAA  423 (486)
Q Consensus       349 ~g~l~dr~g~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  423 (486)
                      .+++.+|..+++.......+..++.+++.     ..++.+......++.+++.+...|......-... +..+|++.++.
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~p~~~~~al~~~-~~~~G~a~a~~  352 (413)
T PRK15403        274 VARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTSLYAFGIGLIFPTLFRFTLFSN-NLPKGTVSASL  352 (413)
T ss_pred             HHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHhHHHHHHHhccC-CCCCcHHHHHH
Confidence            88776554433332222222222222221     1222222345556667777777777664332211 22379999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Q 011416          424 NAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSI  462 (486)
Q Consensus       424 ~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~  462 (486)
                      +.....+..+++...+++.+. +....+...++++.+..
T Consensus       353 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~  390 (413)
T PRK15403        353 NMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAGVIV  390 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHHH
Confidence            999999999999999988777 55555655555544433

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=4.3e-32  Score=266.51  Aligned_cols=392  Identities=30%  Similarity=0.427  Sum_probs=305.6

Q ss_pred             hhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHhccCcc-h
Q 011416           53 SEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-H  131 (486)
Q Consensus        53 ~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~-~  131 (486)
                      +.+..+.....+..+++++|..+|++++|.++||+|||++++.++++..++.++.++++|++.+++.|+++|++.+.. .
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~  190 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLT  190 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhH
Confidence            455667788899999999999999999999999999999999999999999999999999999999999999999888 7


Q ss_pred             hhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHhHHHHHHHHHHhhccCCCchhhhhcCCh
Q 011416          132 VFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRT  211 (486)
Q Consensus       132 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~  211 (486)
                      +...++.|++++++|+.+..+ ......+..+++++++++..  +||+.+++..+++++.++.+++.||+|+|+..+++.
T Consensus       191 ~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~  267 (521)
T KOG0255|consen  191 VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRI  267 (521)
T ss_pred             HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCch
Confidence            788899999999999999999 77777777788888887766  999999999999998877777778999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCCCCcccCCCchhhhHhhhchh-hHHHHHHHHH
Q 011416          212 AEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSK-LARTTILLWL  290 (486)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~  290 (486)
                      +++.+.+++..+.|.......+......                  ....+......+...+.++++.+ .++..+...+
T Consensus       268 ~~a~~~l~~~a~~n~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~  329 (521)
T KOG0255|consen  268 DEAIKILKKIAKLNGRKLSVKELLRLEL------------------LLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLF  329 (521)
T ss_pred             HHHHHHHHHHHhhcCCCCCcHHHHHHHH------------------HhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHH
Confidence            9999998888776633222211111100                  00000011111112355556554 6677777778


Q ss_pred             HHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Q 011416          291 LLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSC  370 (486)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~  370 (486)
                      .++.....+++.......+.                  .+........+..........+...|+.|||.....+..+..
T Consensus       330 ~~~~~~~~y~gl~~~~~~lg------------------~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~  391 (521)
T KOG0255|consen  330 IWFVFSLVYYGLSLNVSGLG------------------GNIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAG  391 (521)
T ss_pred             HHHHHhHHHHhhhhhhhhcC------------------chHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            88888888888877666433                  344555666666888888888999999999999999999999


Q ss_pred             HHHHHHhhhchh---HHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011416          371 LFLLPLVTYQSN---ILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQ  447 (486)
Q Consensus       371 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~  447 (486)
                      ++++...+....   +...+...+..++.+..+...+.+..|.+|+..|..+.+..+....++++++|.+...... ...
T Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~  470 (521)
T KOG0255|consen  392 IGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFP  470 (521)
T ss_pred             HHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcc
Confidence            988888774332   2456666666677777777889999999999999999999999999999999998754444 333


Q ss_pred             chHHHHHHHHHHHHHHHHhcccccccCCCcccccccc
Q 011416          448 MTAVVLLVVVIVTSILSVMLIPFETKGQELSDTVDFT  484 (486)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  484 (486)
                      ...+..++....+.+.+...+.||++.+++.+..++.
T Consensus       471 ~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~t~~~~  507 (521)
T KOG0255|consen  471 LLGLILFGWLALLLGLLSLLLLPETKGKPLPGTLLDA  507 (521)
T ss_pred             cchHHHHHHHHHHHHHHHHhcCcccCCCCCchhHHHH
Confidence            3333445777777777777888899988876665444

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.3e-32  Score=258.62  Aligned_cols=365  Identities=20%  Similarity=0.281  Sum_probs=281.0

Q ss_pred             hhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcCC--CHHHHHHHHHHHHhccCc
Q 011416           52 KSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSP--NYITLITLRCLVGVGLGS  129 (486)
Q Consensus        52 ~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a~--~~~~l~~~r~l~G~~~~~  129 (486)
                      ..++++|..|.|++.++++.|+.+++++.|+++||+|.|+++..+.++.++++++..++.  +++.+++.|+++|++.|.
T Consensus        65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~  144 (466)
T KOG2532|consen   65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV  144 (466)
T ss_pred             CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence            457899999999999999999999999999999999999999999999999999998874  566889999999999999


Q ss_pred             c-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCcHHHHHHhHHHHHHHHHHhh-ccCCCchhhh
Q 011416          130 G-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPR-LDWRWLLGLSSIPSFILLAFLG-FQPESPRYLC  206 (486)
Q Consensus       130 ~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~-~~w~~~f~~~~~~~~~~~~~~~-~~~e~~~~~~  206 (486)
                      . |....+...|.|++||++..++..++..+|.+++.++++.+.+. .||+.+|++.++.+++..++++ +..|+|..+ 
T Consensus       145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h-  223 (466)
T KOG2532|consen  145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKH-  223 (466)
T ss_pred             HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccC-
Confidence            8 77888999999999999999999999999999999999999998 9999999999999999866654 456666531 


Q ss_pred             hcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCCCCcccCCCchhhhHhhhchhhHHHHH
Q 011416          207 LKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTI  286 (486)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  286 (486)
                       +.-.+++   ++.+.+...++                                   +.++....+++++++++   .++
T Consensus       224 -~~is~~E---l~~I~~~k~~~-----------------------------------~~~~~~~vP~~~i~ts~---~vw  261 (466)
T KOG2532|consen  224 -PNISEKE---LKYIEKGKSEA-----------------------------------HVKKKPPVPYKAILTSP---PVW  261 (466)
T ss_pred             -CCCCHHH---HHHHHhccccc-----------------------------------ccCCCCCCCHHHHHcCH---HHH
Confidence             1111111   22222111100                                   00011334888888875   456


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhch--------
Q 011416          287 LLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGR--------  358 (486)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~--------  358 (486)
                      .+++..++....++.+..+.|.+.+          +.++++..+.|+..++..+...+..+++|.++||+.+        
T Consensus       262 ai~~~~f~~~~~~~~l~~y~PtY~~----------~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~  331 (466)
T KOG2532|consen  262 AIWISAFGGNWGFYLLLTYLPTYLK----------EVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTV  331 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHH----------HHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhH
Confidence            6677777778888888888887763          4568999999999999999999999999999998744        


Q ss_pred             -hHHHHHHHHHHHHHHHHHhhhch-hHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHH
Q 011416          359 -KLSITIMFTLSCLFLLPLVTYQS-NILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPL  436 (486)
Q Consensus       359 -~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~  436 (486)
                       |..-.++....+++++.+.+.+. .....+..+....+..+..............+++.+..+|+.+.+..+.++++|.
T Consensus       332 rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~  411 (466)
T KOG2532|consen  332 RKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPL  411 (466)
T ss_pred             HHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence             44456777777777777776442 2222233333333444444333333333324577999999999999999999999


Q ss_pred             HHHHHHH---hhccchHHHHHHHHHHHHHHHHhccc
Q 011416          437 VAVALVA---NCHQMTAVVLLVVVIVTSILSVMLIP  469 (486)
Q Consensus       437 i~g~l~~---~~g~~~~~~~~~~~~~~~~~~~~~~~  469 (486)
                      +.|.+..   ...|...|++.+++.+++.++..++-
T Consensus       412 ~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f~  447 (466)
T KOG2532|consen  412 LVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFFG  447 (466)
T ss_pred             heeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEee
Confidence            9999883   34688899999999988887666653

>TIGR00883 2A0106 metabolite-proton symporter

Probab=100.00  E-value=4.2e-32  Score=258.55  Aligned_cols=356  Identities=20%  Similarity=0.229  Sum_probs=255.7

Q ss_pred             HHHHhhHhhhhchhchhhhhcC--CCcchhHHHHHH-----HHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhh
Q 011416           35 VAEAMEIMILSFVGPTVKSEWN--LSSTEESLITTS-----VFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLS  107 (486)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~--~s~~~~g~~~s~-----~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~  107 (486)
                      +.+++++..++...+.+.+++.  .++++.+.+.+.     .+++..+++++.|+++||+|||+++..+.++..++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~   82 (394)
T TIGR00883         3 AVEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLI   82 (394)
T ss_pred             chhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            5677888888888888888764  455666665543     333445789999999999999999999999999999999


Q ss_pred             hcCCCHH--------HHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHh------
Q 011416          108 SFSPNYI--------TLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIM------  172 (486)
Q Consensus       108 ~~a~~~~--------~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~------  172 (486)
                      +++++++        .+++.|+++|++.+.. +...+++.|++++++|++..++...+..+|.++++.++..+.      
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~  162 (394)
T TIGR00883        83 GLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDD  162 (394)
T ss_pred             hhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            9999875        4788999999999888 777889999999999999999999999999999998877653      


Q ss_pred             --cCCCcHHHHHHhHHHHHHHHHHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCcc
Q 011416          173 --PRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPE  250 (486)
Q Consensus       173 --~~~~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (486)
                        +..+||+.|++.+++.++..+.....||++++...+++.++                                     
T Consensus       163 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------  205 (394)
T TIGR00883       163 ALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEKHKK-------------------------------------  205 (394)
T ss_pred             HhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhcccc-------------------------------------
Confidence              35799999998877766655555556665432110000000                                     


Q ss_pred             chhhcccCCCCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCch
Q 011416          251 LVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDAN  330 (486)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (486)
                                        ...+.++.++++. +.++......+.....++....+.+.+.+          +..+.++.+
T Consensus       206 ------------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~g~~~~~  256 (394)
T TIGR00883       206 ------------------KRGPIRETLTKHR-KPFLLGLGLVIATTTTFYLITTYLPTYLT----------QTLGLSANS  256 (394)
T ss_pred             ------------------ccCCHHHHHHhch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HhcCCChhH
Confidence                              0002233333322 22333333344444444555555554431          334678888


Q ss_pred             hHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH-HHH-hh--hchhHHHHHHHHHHHHhhhhhhhhHhhh
Q 011416          331 LYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFL-LPL-VT--YQSNILTTGLLFGARMCVMGAFTVSLIY  406 (486)
Q Consensus       331 ~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~-~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (486)
                      .+.......+..+++.++.|++.||++||+.+.....+..+.. ..+ ..  ..+.+......++.+++.+...+...+.
T Consensus       257 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  336 (394)
T TIGR00883       257 ALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSF  336 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            8888888999999999999999999999997765544443322 121 12  2344445555666777777888889999


Q ss_pred             ccccccccchhhHhHHHH-HHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHH
Q 011416          407 AAEIYPTSVRSTGAGAAN-AMGRIGGMVCPLVAVALVANCH-QMTAVVLLVV  456 (486)
Q Consensus       407 ~~~~~~~~~~~~~~g~~~-~~~~~g~~~~~~i~g~l~~~~g-~~~~~~~~~~  456 (486)
                      ..|.+|++.|+++.++.. ....+|..++|.+.|++.|+.| +...++....
T Consensus       337 ~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~  388 (394)
T TIGR00883       337 LPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAA  388 (394)
T ss_pred             HHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHH
Confidence            999999999999999854 4456888899999999999988 5444444443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=100.00  E-value=1.3e-39  Score=315.02  Aligned_cols=415  Identities=29%  Similarity=0.450  Sum_probs=302.3

Q ss_pred             HHHHHHHHhhHhhhhchhchhh--hhcCCC---------cchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHH
Q 011416           31 GLGWVAEAMEIMILSFVGPTVK--SEWNLS---------STEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALV   99 (486)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~s---------~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~   99 (486)
                      .++.+..+++....+...+...  .+++.+         ..+.+++.+...+|..++++++|.++||+|||+.+..+.++
T Consensus         6 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~   85 (451)
T PF00083_consen    6 SLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALL   85 (451)
T ss_pred             HHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhcccccccccccccccccccccccccc
Confidence            3445777777777766655544  222222         23568999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhcCC---CHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 011416          100 TAGAGLLSSFSP---NYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRL  175 (486)
Q Consensus       100 ~~~~~~~~~~a~---~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~  175 (486)
                      ..++.++.++++   |++.+.++|+++|++.|.. +....++.|..|+++|++..++.+.+..+|.+++..++..+.+..
T Consensus        86 ~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~  165 (451)
T PF00083_consen   86 MIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYS  165 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999   9999999999999999988 778889999999999999999999999999999988876664433


Q ss_pred             ---CcHHHHHHhHHHHHHHHHHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccch
Q 011416          176 ---DWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELV  252 (486)
Q Consensus       176 ---~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (486)
                         +||..+.+.++++++..+...++||+|+|+..+++.+++++.+++.+..+..+.+.++...       +        
T Consensus       166 ~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~-------~--------  230 (451)
T PF00083_consen  166 DNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKA-------E--------  230 (451)
T ss_pred             ccccccccccccccccccccccccccccccceeccccccccccccccccccccccccccccccc-------c--------
Confidence               4999999999999888888889999999999999888888777664332111110000000       0        


Q ss_pred             hhcccCCCCCcccCCCchhhhHhhhchhh-HHHHHHHHHHHHHH-HHHHHHHHHHHhhhccccccCCCCccccCCCCCch
Q 011416          253 HLLSSNGGNKTTEGKSGLSLFLMLFSSKL-ARTTILLWLLLFGN-SFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDAN  330 (486)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (486)
                             .++.++.+   ..++++++++. +++....+...... ....+....+.+.+.           +..+.+.. 
T Consensus       231 -------~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~-----------~~~~~~~~-  288 (451)
T PF00083_consen  231 -------KKESQESK---ASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIF-----------ENAGISNS-  288 (451)
T ss_pred             -------cccccccc---eeeeeccccccccccccccccccccccccccccccccccccc-----------cccccccc-
Confidence                   00000000   35566665543 33333333333322 222233333444333           22334443 


Q ss_pred             hHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHh--h---hch----hHHHHHHHHHH-HHhhhhhh
Q 011416          331 LYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLV--T---YQS----NILTTGLLFGA-RMCVMGAF  400 (486)
Q Consensus       331 ~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~--~---~~~----~~~~~~~~~~~-~~~~~~~~  400 (486)
                       ........+...++.+++.++.||+|||+.+..+..+++++.+.+.  .   ..+    .........+. .....+..
T Consensus       289 -~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~  367 (451)
T PF00083_consen  289 -FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWG  367 (451)
T ss_pred             -cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeecccccccccc
Confidence             2334455667778888888999999999999988888887777664  1   121    12222222222 22333566


Q ss_pred             hhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhcccccccCCCcccc
Q 011416          401 TVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSDT  480 (486)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  480 (486)
                      +..+.+..|.+|++.|+++.|+....++++++++|.+...+.+..+....+.++++++++..++.+.+.||+|+++.+|.
T Consensus       368 ~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei  447 (451)
T PF00083_consen  368 PLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEI  447 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHH
Confidence            77889999999999999999999999999999999999888888776778888888889888999999999999999988


Q ss_pred             ccc
Q 011416          481 VDF  483 (486)
Q Consensus       481 ~~~  483 (486)
                      +++
T Consensus       448 ~~~  450 (451)
T PF00083_consen  448 QEM  450 (451)
T ss_pred             Hhh
Confidence            764

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=100.00  E-value=1.5e-31  Score=253.07  Aligned_cols=358  Identities=12%  Similarity=0.034  Sum_probs=255.5

Q ss_pred             HHHHhhHhhhhchhc-hhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcCCCH
Q 011416           35 VAEAMEIMILSFVGP-TVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNY  113 (486)
Q Consensus        35 ~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a~~~  113 (486)
                      ++.........+.++ .+++++|+|..+.|++.+...+...+.+++.|+++||+|||+++..+.++.+++.+++.+++++
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~   99 (400)
T PRK11646         20 MLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEP   99 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccH
Confidence            333333344444444 5678999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHhHHHHHHHH
Q 011416          114 ITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILL  192 (486)
Q Consensus       114 ~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~f~~~~~~~~~~~  192 (486)
                      +.+++.|+++|++.+.. +...+++.|++|+++|++++|+.....++|..+||.+++.+. ..+||+.|++.++..++..
T Consensus       100 ~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~  178 (400)
T PRK11646        100 WLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAA  178 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHH
Confidence            99999999999998877 777788999999999999999999999999999999999998 6899999999887766653


Q ss_pred             H-HhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCCCCcccCCCchh
Q 011416          193 A-FLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLS  271 (486)
Q Consensus       193 ~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (486)
                      + ..++.||.+.    ++..++.+                                                       .
T Consensus       179 i~~~~~~~~~~~----~~~~~~~~-------------------------------------------------------~  199 (400)
T PRK11646        179 AFNAWLLPAYKL----STVRTPVR-------------------------------------------------------E  199 (400)
T ss_pred             HHHHHhCCcccc----cccchhhH-------------------------------------------------------H
Confidence            3 3344454211    00000000                                                       0


Q ss_pred             hhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHHHHH
Q 011416          272 LFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAI  351 (486)
Q Consensus       272 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~  351 (486)
                      .++.+++++........   .+...........+.|.+.           ++.+.++.+.+.......+....+....++
T Consensus       200 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~p~~~-----------~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~  265 (400)
T PRK11646        200 GMTRVLRDKRFVTYVLT---LTGYYMLAVQVMLMLPIMV-----------NDIAGSPSAVKWMYAIEACLSLTLLYPIAR  265 (400)
T ss_pred             HHHHHHcCchHHHHHHH---HHHHHHHHHHHHHhhhhhH-----------HhhcCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            23334433332222111   1111111122223344332           223345677777777777766655555565


Q ss_pred             HHH-HhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHHHHHH
Q 011416          352 LVD-TAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIG  430 (486)
Q Consensus       352 l~d-r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g  430 (486)
                      +.| |++.++.+..+..+.+++...+...++.+.......+.+.+.+...|...++..+..|++++|+++|+.+...++|
T Consensus       266 ~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g  345 (400)
T PRK11646        266 WSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALG  345 (400)
T ss_pred             HHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHH
Confidence            555 5666666667777777776666555555555555566677777777888899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhc----cchHHHHHHHHHHHHHHHHh
Q 011416          431 GMVCPLVAVALVANCH----QMTAVVLLVVVIVTSILSVM  466 (486)
Q Consensus       431 ~~~~~~i~g~l~~~~g----~~~~~~~~~~~~~~~~~~~~  466 (486)
                      ..++|.+.|.+.|+.+    ....+...+.+.+++.+...
T Consensus       346 ~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (400)
T PRK11646        346 GAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLALY  385 (400)
T ss_pred             HHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHH
Confidence            9999999999999853    23445554555555544433

>PRK11010 ampG muropeptide transporter; Validated

Probab=100.00  E-value=5.5e-31  Score=254.77  Aligned_cols=372  Identities=16%  Similarity=0.117  Sum_probs=265.8

Q ss_pred             HHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhh-----cchHH-HHHHHHHHHH
Q 011416           29 YAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNY-----GRRMG-FLGEALVTAG  102 (486)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-----G~r~~-~~~~~~~~~~  102 (486)
                      .+++.++..+......+..+|.+.++.|.|.+++|.+ +.....+ ++.+++|+++||+     |||+. +..+.++.++
T Consensus        16 ~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~   93 (491)
T PRK11010         16 ILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLV   93 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHH
Confidence            3445556777777788888999999999999999997 4444444 5889999999999     99885 6678888878


Q ss_pred             hhhhhhcC---CCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCc
Q 011416          103 AGLLSSFS---PNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMP-RLDW  177 (486)
Q Consensus       103 ~~~~~~~a---~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~-~~~w  177 (486)
                      +..++++.   ++++.+.+.+++.|++.+.. ++..+++.|++|+++|+++.++...+..+|.++++.++..+.+ ..||
T Consensus        94 ~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GW  173 (491)
T PRK11010         94 AIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGW  173 (491)
T ss_pred             HHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCH
Confidence            87777665   47888999999999998887 7777999999999999999999999999999999999999988 5799


Q ss_pred             HHHHHHhHHHHHHHHHHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhccc
Q 011416          178 RWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSS  257 (486)
Q Consensus       178 ~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (486)
                      |..|++.+++.++..+..++.||+++..   +++++.++.                                        
T Consensus       174 r~~f~i~a~l~ll~~l~~~~~~e~~~~~---~~~~~~~~~----------------------------------------  210 (491)
T PRK11010        174 QGMYWLMAALLIPCIIATLLAPEPTDTI---PVPKTLEQA----------------------------------------  210 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCcccc---ccccchhhh----------------------------------------
Confidence            9999999888777666555677754311   000000000                                        


Q ss_pred             CCCCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHH-H
Q 011416          258 NGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDE-F  336 (486)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  336 (486)
                                 ...+++++++++..+......+.+.   ...+....+.+.+.          .+..|++..+.+... .
T Consensus       211 -----------~~~~l~~~~~~~~~~~~ll~~~l~~---~~~~~~~~~~~~~l----------~~~~G~s~~~~g~~~~~  266 (491)
T PRK11010        211 -----------VVAPLRDFFGRNNAWLILLLIVLYK---LGDAFAMSLTTTFL----------IRGVGFDAGEVGLVNKT  266 (491)
T ss_pred             -----------HHHHHHHHHcCcCHHHHHHHHHHHH---HHHHHHHHHHHHHH----------HHhcCCCHHHHHHHHHH
Confidence                       0013444554443332222222221   11112222222221          123578999998887 4


Q ss_pred             HHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHH---hhh-chhHHHHHHHHHHHHhhhhhhhhHhhhcccccc
Q 011416          337 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPL---VTY-QSNILTTGLLFGARMCVMGAFTVSLIYAAEIYP  412 (486)
Q Consensus       337 ~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (486)
                      ...++.+++.+++|+++||+++|+.+.++.++.++..+.+   ... ++.+......++..++.+...+...+...+..+
T Consensus       267 ~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~  346 (491)
T PRK11010        267 LGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCN  346 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            5567999999999999999999887776655544433222   222 233333334444444445555667788888888


Q ss_pred             ccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhccc
Q 011416          413 TSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIP  469 (486)
Q Consensus       413 ~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  469 (486)
                      ++.+++.+|+.+...++|..+++.+.|++.|..||...|.+.+++.+++.+.....+
T Consensus       347 ~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~  403 (491)
T PRK11010        347 KSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCR  403 (491)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence            889999999999999999999999999999999998888888888888777666553

>PRK15011 sugar efflux transporter B; Provisional

Probab=100.00  E-value=4.3e-31  Score=250.12  Aligned_cols=361  Identities=11%  Similarity=0.101  Sum_probs=241.6

Q ss_pred             HHHHHHhhHhhhhchhch-hhhhcCCCcchhHHHHHHHHH-HHHHHHHHHhhhhhhhcchHHH-HHHHHHHHHhhhhhhc
Q 011416           33 GWVAEAMEIMILSFVGPT-VKSEWNLSSTEESLITTSVFA-GLVVGAYAWGLVADNYGRRMGF-LGEALVTAGAGLLSSF  109 (486)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~s~~~~-~~~i~~~~~g~l~dr~G~r~~~-~~~~~~~~~~~~~~~~  109 (486)
                      ..++..+......+.+|. +.+++|+|.+++|++.+...+ ++.++.++.|+ .||+||||.+ ..+.++.+++..+.++
T Consensus        23 ~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~  101 (393)
T PRK15011         23 VAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAW  101 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHH
Confidence            355555655556666655 678999999999999877655 55555555555 9999999875 4566666788888889


Q ss_pred             CCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCch--hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHhHH
Q 011416          110 SPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNR--GMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSI  186 (486)
Q Consensus       110 a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~f~~~~~  186 (486)
                      +++++.+++.+.+.|...+.. +...+++.++.++++|  +...++.+.+.++|.+++|++++.+.+++|||..|++.++
T Consensus       102 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~  181 (393)
T PRK15011        102 NRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAV  181 (393)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHH
Confidence            999998876655544433444 6666777787776655  3456888999999999999999999999999999999888


Q ss_pred             HHHHHHH-HhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCCCCccc
Q 011416          187 PSFILLA-FLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTE  265 (486)
Q Consensus       187 ~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (486)
                      ..++..+ .+.++||+++..   ++.++            ..+                                     
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~---~~~~~------------~~~-------------------------------------  209 (393)
T PRK15011        182 AFIVCGVMVWLFLPSMRKEL---PLATG------------TLE-------------------------------------  209 (393)
T ss_pred             HHHHHHHHHHhhcCccCCCC---ccccc------------ccc-------------------------------------
Confidence            7776544 455567654210   00000            000                                     


Q ss_pred             CCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHH
Q 011416          266 GKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPG  345 (486)
Q Consensus       266 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  345 (486)
                            ..+.  +++.....   ..........++....+.|.+.          .++.+.++.+.+.......++.+++
T Consensus       210 ------~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~p~~l----------~~~~~~~~~~~g~~~~~~~~~~i~~  268 (393)
T PRK15011        210 ------APRR--NRRDTLLL---FVICTLMWGTNSLYIINMPLFI----------INELHLPEKLAGVMMGTAAGLEIPT  268 (393)
T ss_pred             ------cccc--ccccHHHH---HHHHHHHHHHHHHHHHHHHHHH----------HHHcCCCHHHHHHHHHHHHHHHHHH
Confidence                  0000  00100111   1111111122222223334322          1234678788888877777888889


Q ss_pred             HHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHH
Q 011416          346 LLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANA  425 (486)
Q Consensus       346 ~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  425 (486)
                      .++.|+++||++||+.+..+.....+....+...++.+......++.+++.+...+....+..|..|+ ++++++++.+.
T Consensus       269 ~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~  347 (393)
T PRK15011        269 MLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTN  347 (393)
T ss_pred             HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHH
Confidence            99999999999999887766655554444433344444444444445555555556666777888885 49999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhcc
Q 011416          426 MGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLI  468 (486)
Q Consensus       426 ~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  468 (486)
                      ..++|..++|.+.|.+.|..|+...+.+.+++.+++.+..+..
T Consensus       348 ~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~  390 (393)
T PRK15011        348 TSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRI  390 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999898888887777777766665544

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=100.00  E-value=3.9e-31  Score=249.37  Aligned_cols=360  Identities=12%  Similarity=-0.038  Sum_probs=269.8

Q ss_pred             HHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHH----HHHHHHHHHhhh
Q 011416           30 AGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGF----LGEALVTAGAGL  105 (486)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~----~~~~~~~~~~~~  105 (486)
                      +.+.++..+.......|.+|.+.+++|.|.+++|++.+++.+...++++++|+++||+|||...    ..+..+..+  .
T Consensus         9 l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~   86 (382)
T TIGR00902         9 LALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--A   86 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--H
Confidence            4456777777778888999999999999999999999999999999999999999999985433    222222222  2


Q ss_pred             hhhcCCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHh
Q 011416          106 LSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLS  184 (486)
Q Consensus       106 ~~~~a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~f~~~  184 (486)
                      .+..+++++.+++.|+++|.+.+.. +...++..++  +++|+++.|......++|.+++|++++.+.+.+|||..|++.
T Consensus        87 ~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~  164 (382)
T TIGR00902        87 FSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAIL  164 (382)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHH
Confidence            4456789999999999999888777 6666666554  477899999999999999999999999999999999999887


Q ss_pred             HHHHHHHHHHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCCCCcc
Q 011416          185 SIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTT  264 (486)
Q Consensus       185 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (486)
                      ++..++.++.. .++|+++.   +++.++.+                                                 
T Consensus       165 ~~~~~~~~~~~-~~~~~~~~---~~~~~~~~-------------------------------------------------  191 (382)
T TIGR00902       165 TAGLAFMLIGF-LIKPTIPP---KDAIPEDE-------------------------------------------------  191 (382)
T ss_pred             HHHHHHHHHHH-HcCCCCCC---Cccccccc-------------------------------------------------
Confidence            65533333333 33333210   00000000                                                 


Q ss_pred             cCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHH
Q 011416          265 EGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIP  344 (486)
Q Consensus       265 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  344 (486)
                        .+.....++++|++..+.......+   ..........+.+.+.           ++.|.++...+.......++.++
T Consensus       192 --~~~~~~~~~~l~~~~~~~~l~~~~l---~~~~~~~~~~~~~~~l-----------~~~g~s~~~~g~l~~~~~~~~i~  255 (382)
T TIGR00902       192 --SQGDSAFIALLKNPMNLRFLAAVCL---IQGAHAAYYGFSAIYW-----------QAAGISASATGLLWGIGVLAEII  255 (382)
T ss_pred             --cccchhHHHHHcChHHHHHHHHHHH---HHHHHHHHHHHHHHHH-----------HHCCCCHhHHHHHHHHHHHHHHH
Confidence              0000134455555443333332222   2233333333444333           34578999999999999999999


Q ss_pred             HHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHH
Q 011416          345 GLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAAN  424 (486)
Q Consensus       345 ~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  424 (486)
                      +..+.+++.||+++|+.+.++.+...+....+...++.+.......+.++..+...+....++.+. |++++++++++++
T Consensus       256 ~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~  334 (382)
T TIGR00902       256 IFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYN  334 (382)
T ss_pred             HHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHH
Confidence            999999999999999999999999999988888888888888888999999999999999999988 9999999999987


Q ss_pred             H-HHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Q 011416          425 A-MGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILS  464 (486)
Q Consensus       425 ~-~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~  464 (486)
                      . ...+|..++|.+.|++.|+.|. ..++..+++.+++.++
T Consensus       335 ~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       335 ALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            5 5679999999999999999985 6677777777655443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=100.00  E-value=8.2e-31  Score=247.84  Aligned_cols=359  Identities=12%  Similarity=0.054  Sum_probs=261.5

Q ss_pred             HHHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhh
Q 011416           27 LAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLL  106 (486)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~  106 (486)
                      +.++++.++..++.....++..|.+++++|+|..+.|++.+.+++++.+++++.|++.||+|||+++..+.++++++.++
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l   84 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFL   84 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence            44566677778888888899999999999999999999999999999999999999999999999999999999999988


Q ss_pred             hhc---CCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcC--------
Q 011416          107 SSF---SPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPR--------  174 (486)
Q Consensus       107 ~~~---a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~--------  174 (486)
                      +..   .+|++.+++.|++.|+|.|.. +...+++.+..|+++|++.+++.+...++|..+++.++..+...        
T Consensus        85 ~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~  164 (410)
T TIGR00885        85 FWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQD  164 (410)
T ss_pred             HHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhh
Confidence            644   468999999999999999998 77788999999999999999999999999999999998877422        


Q ss_pred             ------------------CCcHHHHHHhHHHHHHHHHHhhc--cCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchh
Q 011416          175 ------------------LDWRWLLGLSSIPSFILLAFLGF--QPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKL  234 (486)
Q Consensus       175 ------------------~~w~~~f~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (486)
                                        .+||++|++.+++.++..+...+  .||.++     ++.++ .+                  
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~-----~~~~~-~~------------------  220 (410)
T TIGR00885       165 VLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH-----SDAKQ-IS------------------  220 (410)
T ss_pred             hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----ccccc-cc------------------
Confidence                              36999999888877665444332  232111     00000 00                  


Q ss_pred             hhccccCCCCCCCCccchhhcccCCCCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 011416          235 VARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDT  314 (486)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (486)
                                                        .....+++++++..+.....   .+...........+.+.+...  
T Consensus       221 ----------------------------------~~~~~~~~~~~~~~~~~~l~---~f~yvg~e~~~~s~l~~y~~~--  261 (410)
T TIGR00885       221 ----------------------------------FSASLSRLARIRHYREGVIA---QFFYVGVQIMCWTFIIQYAVR--  261 (410)
T ss_pred             ----------------------------------chhhHHHHHhChhHHHHHHH---HHHHHHHHHHHHHHHHHHHhh--
Confidence                                              00022233444333332222   222223333333444443311  


Q ss_pred             cCCCCccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHH
Q 011416          315 RCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARM  394 (486)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (486)
                             ...+.+...++...........+|+++++++.||+++|+.+.+...+.++..++....++.. ....+.+.++
T Consensus       262 -------~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~-~~~~l~~~gl  333 (410)
T TIGR00885       262 -------LIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHV-GLYCLTLCSA  333 (410)
T ss_pred             -------ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHH
Confidence                   01123334444455566677899999999999999999998888888888777777655443 3566667788


Q ss_pred             hhhhhhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhh------ccchHHHHHHHHH
Q 011416          395 CVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANC------HQMTAVVLLVVVI  458 (486)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~------g~~~~~~~~~~~~  458 (486)
                      +.+..+|..++...+..+++.+..+.++...+  +|+.+.|.+.|.+.|..      +....|++-..+.
T Consensus       334 f~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~  401 (410)
T TIGR00885       334 FMSLMFPTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCF  401 (410)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHHhcccccCccchHHHHHHHHH
Confidence            88899999999999999877655555555544  99999999999999964      3445555443333

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK10054 putative transporter; Provisional

Probab=100.00  E-value=3.1e-31  Score=250.50  Aligned_cols=364  Identities=13%  Similarity=0.070  Sum_probs=262.0

Q ss_pred             HHHHHHHhhHhhhhchhc-hhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcC
Q 011416           32 LGWVAEAMEIMILSFVGP-TVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFS  110 (486)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a  110 (486)
                      +..++.........+.+| .+.+++|++..+.|++.+.+.+++.+++++.|+++||+|||+++.++.++.+++.++.+++
T Consensus        14 ~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~   93 (395)
T PRK10054         14 ASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLV   93 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH
Confidence            344555555555555554 5667899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHhHHHHH
Q 011416          111 PNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSF  189 (486)
Q Consensus       111 ~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~f~~~~~~~~  189 (486)
                      +|++.+++.|++.|.+.+.. +...++..|..++++|++++++.....++|.+++|.+++.+.+ .+|+.+|++.+++.+
T Consensus        94 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~  172 (395)
T PRK10054         94 NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSA  172 (395)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHH
Confidence            99999999999988877766 6677888999999999999999999999999999999998875 799999998887776


Q ss_pred             HHHHH-hhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCCCCcccCCC
Q 011416          190 ILLAF-LGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKS  268 (486)
Q Consensus       190 ~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (486)
                      +..+. .+++||+++..   +++++  +.                                                   
T Consensus       173 i~~i~~~~~~~~~~~~~---~~~~~--~~---------------------------------------------------  196 (395)
T PRK10054        173 FPLVFIQIWVQRSEKAI---ATETG--SV---------------------------------------------------  196 (395)
T ss_pred             HHHHHHHHHHhcccccc---ccchh--hh---------------------------------------------------
Confidence            65433 44455543210   00000  00                                                   


Q ss_pred             chhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHH
Q 011416          269 GLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLL  348 (486)
Q Consensus       269 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  348 (486)
                        ...++.++++..+.....   .+...+.+.....+.+.+..        ..++.+.+....+.......+........
T Consensus       197 --~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  263 (395)
T PRK10054        197 --WSPSVLLQDKALLWFTCS---GFLASFVSGAFASCISQYVM--------VVADSDFAEKVVAVVLPVNAAMVVSLQYS  263 (395)
T ss_pred             --hhhhhhccCceehHHHHH---HHHHHHHHHHhhhhHHHHHH--------HhcccchHHHHHHHHHHhhhhheeeehhH
Confidence              011222333322222221   11111111111111121110        00123455556667777777777777788


Q ss_pred             HHHHHHHhchhHHHHHHHHHHHHHHHHHhhh-chhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHHH
Q 011416          349 AAILVDTAGRKLSITIMFTLSCLFLLPLVTY-QSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMG  427 (486)
Q Consensus       349 ~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  427 (486)
                      .|++.||.++|+.+..+..+.+++...+... ++.+...+...+.+++.....|.....+.+..|++.++++++..+ ..
T Consensus       264 ~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~  342 (395)
T PRK10054        264 VGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LG  342 (395)
T ss_pred             HHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HH
Confidence            8999999999999888887777777666543 444445566677777777777888889999999999999988755 67


Q ss_pred             HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHh
Q 011416          428 RIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVM  466 (486)
Q Consensus       428 ~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  466 (486)
                      ++|..+||.+.|.+.|+.|+...+.+.+++..++.++..
T Consensus       343 ~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~  381 (395)
T PRK10054        343 WLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML  381 (395)
T ss_pred             HHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence            799999999999999999888777776666655555544

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=100.00  E-value=1.6e-30  Score=246.97  Aligned_cols=350  Identities=12%  Similarity=0.054  Sum_probs=254.4

Q ss_pred             HHHHHHHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHH
Q 011416           23 QCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAG  102 (486)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~  102 (486)
                      .++.+.+..+......+......+.+|.+.+++|.|+.+.+++.+++.+++.++++++|+++||+|||+++..+..+.++
T Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~   85 (394)
T PRK11652          6 NVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFIL   85 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHH
Confidence            34455555556666667777888889999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcCCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Q 011416          103 AGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLL  181 (486)
Q Consensus       103 ~~~~~~~a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~f  181 (486)
                      +.+++.+++|++.+++.|++.|++.+.. +....+..|.+++++++++.++...+..+|..++|.+++.+.+..|||+.|
T Consensus        86 ~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f  165 (394)
T PRK11652         86 GTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACY  165 (394)
T ss_pred             HHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHH
Confidence            9999999999999999999999998877 556677889999999999999999999999999999999999889999999


Q ss_pred             HHhHHHHHHHH-HHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCC
Q 011416          182 GLSSIPSFILL-AFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGG  260 (486)
Q Consensus       182 ~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (486)
                      ++.++..++.. +..++.||+++..   +++++.+                                             
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~---------------------------------------------  197 (394)
T PRK11652        166 LFLLLLGAGVTFSMARWMPETRPAD---ARRTRVL---------------------------------------------  197 (394)
T ss_pred             HHHHHHHHHHHHHHHHhCCccCccc---cchhHHH---------------------------------------------
Confidence            99887766543 3455667764311   0000000                                             


Q ss_pred             CCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHh
Q 011416          261 NKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSL  340 (486)
Q Consensus       261 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  340 (486)
                                ..++..++++..+......+..+.....+.   .+.+.+.          .+..+.++.+.++......+
T Consensus       198 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~----------~~~~g~~~~~~~~~~~~~~~  254 (394)
T PRK11652        198 ----------ASYRTLLSNRRFNCYLLMLIGTLAGIAVFE---ACSGVLM----------GAVLGLSSMTVSILFILPIP  254 (394)
T ss_pred             ----------HHHHHHHcChHHHHHHHHHHHHHHHHHHHH---HhChHHH----------HHHcCCCHHHHHHHHHHHHH
Confidence                      033444444443333322222221111111   1111111          11246788888888888888


Q ss_pred             hHHHHHHHHHHHHHHhchhHHHHHHHHHHH-HHHHHHhh--hchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchh
Q 011416          341 AEIPGLLLAAILVDTAGRKLSITIMFTLSC-LFLLPLVT--YQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRS  417 (486)
Q Consensus       341 ~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (486)
                      +.+++..+.+++.||.+++........... +.......  ..+.+.......+.+++.+...+...+...|..| ++++
T Consensus       255 ~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g  333 (394)
T PRK11652        255 AAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-YLAG  333 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccch
Confidence            888899999999999884433322222222 22111111  1234445556677777888888989988888887 5689


Q ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 011416          418 TGAGAANAMGRIGGMVCPLVAVALVAN  444 (486)
Q Consensus       418 ~~~g~~~~~~~~g~~~~~~i~g~l~~~  444 (486)
                      ++.++.+....+|+.+++.+.+.+.+.
T Consensus       334 ~~~~~~~~~~~lg~~~~~~~~~~~~~~  360 (394)
T PRK11652        334 TAGALLGGLQNIGSGLAALLSAMLPQT  360 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            999999999999999999998877554

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=100.00  E-value=9.3e-34  Score=252.82  Aligned_cols=369  Identities=18%  Similarity=0.177  Sum_probs=258.4

Q ss_pred             CCchHHHHHHHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHH
Q 011416           19 FGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEAL   98 (486)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~   98 (486)
                      ..+..++.+.++++...+++.|++.+....+.+++.+|+++++.|++.+.+.+.+.+++|++|+++|||.||+++.+|..
T Consensus        27 ~~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~  106 (493)
T KOG1330|consen   27 SMKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIF  106 (493)
T ss_pred             ccccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHH
Confidence            34556778888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhhcCCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-
Q 011416           99 VTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLD-  176 (486)
Q Consensus        99 ~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~-  176 (486)
                      +|.++.++++++..||+++++|.+.|+|.+.. +.++++++|.++..+|++++++++.+..+|..+|.+.+..+.+..+ 
T Consensus       107 iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~  186 (493)
T KOG1330|consen  107 IWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFW  186 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccc
Confidence            99999999999999999999999999999999 8899999999999999999999999999999999999999887666 


Q ss_pred             cHHHHHHhHHHHHHHHHHhh-ccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhc
Q 011416          177 WRWLLGLSSIPSFILLAFLG-FQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLL  255 (486)
Q Consensus       177 w~~~f~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (486)
                      ||+.|+..+++++++.++.+ +.+|+++.     ..++....                                      
T Consensus       187 Wr~af~~~avl~vi~~~L~~~f~~eP~rg-----a~~~~~~~--------------------------------------  223 (493)
T KOG1330|consen  187 WRWAFRGSAVLGVIVGLLVFLFVREPERG-----ARDEVDGE--------------------------------------  223 (493)
T ss_pred             eEEEEEeehHHHHHHHHHHHhhccCcccc-----cccccccC--------------------------------------
Confidence            99999999999999866544 44554321     11100000                                      


Q ss_pred             ccCCCCCcccCCCchhhhHhhhchh-hHHHHHHHHHHHH-HHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHH
Q 011416          256 SSNGGNKTTEGKSGLSLFLMLFSSK-LARTTILLWLLLF-GNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYI  333 (486)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (486)
                          .....+.....++.+.+.+.+ .....+......+ +..+.++......-.+            +-.+.+.....+
T Consensus       224 ----~~~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~------------~~~~~~~~~~~i  287 (493)
T KOG1330|consen  224 ----NKMVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSY------------ELIGFDHNATLI  287 (493)
T ss_pred             ----CcCCCCccchHHHHHHHHccCceeeehHHHHHHHHhccccchhhhhHHHHHH------------HHhCCccccchh
Confidence                000011112222333333322 1112222222222 2333333322221111            112355556667


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHhchh----HHHH-------HHHHHHHHHHHHHhh-hchhHHHHHHHHHHHHhh-hhhh
Q 011416          334 DEFITSLAEIPGLLLAAILVDTAGRK----LSIT-------IMFTLSCLFLLPLVT-YQSNILTTGLLFGARMCV-MGAF  400 (486)
Q Consensus       334 ~~~~~~i~~~~~~~~~g~l~dr~g~~----~~~~-------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~  400 (486)
                      +..++..++.+|.+++|.++||+.|+    ....       .+..+.+..+.+... ..........+++.+... ....
T Consensus       288 fg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~~~~  367 (493)
T KOG1330|consen  288 FGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGETISWFNW  367 (493)
T ss_pred             hhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccc
Confidence            78888899999999999999995321    1111       111222222222222 122222222233333332 3334


Q ss_pred             hhHhhhccccccccchhhHhHHHHHHHH-HHHHHHHHHHHHHHHhhc
Q 011416          401 TVSLIYAAEIYPTSVRSTGAGAANAMGR-IGGMVCPLVAVALVANCH  446 (486)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~g~~~~~~i~g~l~~~~g  446 (486)
                      +....+..|.+|++.|.+++++...+.. +|.+-+|.+.|.+.|+..
T Consensus       368 a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~  414 (493)
T KOG1330|consen  368 ATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKLR  414 (493)
T ss_pred             ccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHhh
Confidence            5566678889999999999999887776 566666769999998753

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1e-31  Score=252.82  Aligned_cols=384  Identities=15%  Similarity=0.207  Sum_probs=277.1

Q ss_pred             CCchHHHHHHHHHHHHHHHHhhHhhhh-chhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHH
Q 011416           19 FGKYQCFVLAYAGLGWVAEAMEIMILS-FVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEA   97 (486)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~   97 (486)
                      ..|..++++..++..++..+.++..++ ..+..+.+|.+....+.+.+.++++++|+++.+|+|.+.||++..+.+....
T Consensus        39 ~~K~dl~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~  118 (495)
T KOG2533|consen   39 LRKLDLFILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSG  118 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHH
Confidence            344556677777777888888877776 3344577999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhhcCCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHh----
Q 011416           98 LVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIM----  172 (486)
Q Consensus        98 ~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~----  172 (486)
                      +++++-.++....+|++.+++.|++.|+.++.. |....+++.|+.++||++.+|++.+..++|.++|++++..+.    
T Consensus       119 ~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~  198 (495)
T KOG2533|consen  119 ILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNG  198 (495)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcC
Confidence            999999988888999999999999999999999 888889999999999999999999999999999999998863    


Q ss_pred             --cCCCcHHHHHHhHHHHHHHH-HHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCc
Q 011416          173 --PRLDWRWLLGLSSIPSFILL-AFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPP  249 (486)
Q Consensus       173 --~~~~w~~~f~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (486)
                        ...|||+.|++.++++++.. +..+++|++|....-. +++|..-..++.++.+....                    
T Consensus       199 ~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl-~~~ek~~~~~~~~~~~~~~~--------------------  257 (495)
T KOG2533|consen  199 SGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFL-TDEEKELVVERLRESPSGGI--------------------  257 (495)
T ss_pred             CCCcCCceeehhHHHHHHHHHHheEEEEecCChhhcccc-chHHHHHHHHHHHhccCCCc--------------------
Confidence              45799999999999998874 5577789998632111 11111111122211111100                    


Q ss_pred             cchhhcccCCCCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCc
Q 011416          250 ELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDA  329 (486)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (486)
                                     .++.   .++.+++....+.++...+++++.....++...|.|.+.+.          ..+++..
T Consensus       258 ---------------~~~~---~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~----------~~~~s~~  309 (495)
T KOG2533|consen  258 ---------------ENKF---KWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKS----------NGGYSEL  309 (495)
T ss_pred             ---------------cccc---CHHHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHc----------CCCcChH
Confidence                           0001   33334434444567777778888888888888888877632          2468899


Q ss_pred             hhHHHHHHHHhhHHHHHHHHHHHHHH----hchhHHHHHHHHHHHHHH-HHHhhhchhHHHHHHHHHHHHhhhhhhhhHh
Q 011416          330 NLYIDEFITSLAEIPGLLLAAILVDT----AGRKLSITIMFTLSCLFL-LPLVTYQSNILTTGLLFGARMCVMGAFTVSL  404 (486)
Q Consensus       330 ~~~~~~~~~~i~~~~~~~~~g~l~dr----~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (486)
                      ++..+.....++++++.+++|+++||    ..+|........+..+.. +.+.............+....+.....+...
T Consensus       310 ~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (495)
T KOG2533|consen  310 QANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIAL  389 (495)
T ss_pred             HhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHH
Confidence            99999999999999999999999999    556666655555544433 4444444344444445555555666677778


Q ss_pred             hhccccccccchhh-HhHHHHHHHHHHHHHHHHHHHH-HHHhhccchHH
Q 011416          405 IYAAEIYPTSVRST-GAGAANAMGRIGGMVCPLVAVA-LVANCHQMTAV  451 (486)
Q Consensus       405 ~~~~~~~~~~~~~~-~~g~~~~~~~~g~~~~~~i~g~-l~~~~g~~~~~  451 (486)
                      ...++....+.+.. ..+......+.++.++|.+.-. ....+++...+
T Consensus       390 ~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f  438 (495)
T KOG2533|consen  390 SWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVF  438 (495)
T ss_pred             hhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHH
Confidence            88887776554443 3344444445555555555432 22234555556

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=100.00  E-value=1.1e-30  Score=246.85  Aligned_cols=333  Identities=15%  Similarity=0.156  Sum_probs=238.1

Q ss_pred             hhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcCCCHHHHHH
Q 011416           39 MEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLIT  118 (486)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a~~~~~l~~  118 (486)
                      +....+.|..|.+.+++|+|+.+.+++.+++.++..++.++.|+++||+|||+++..+.++.+++.+++.++++++.+++
T Consensus         5 ~~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   84 (377)
T PRK11102          5 LAIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIY   84 (377)
T ss_pred             hHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHH
Confidence            34456678899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHhHHHHHHHH-HHhh
Q 011416          119 LRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILL-AFLG  196 (486)
Q Consensus       119 ~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~f~~~~~~~~~~~-~~~~  196 (486)
                      .|++.|++.+.. +...+++.|++|+++|++++++.+.+..+|..++|.+++.+.+..+||+.|++.+++.++.. +..+
T Consensus        85 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (377)
T PRK11102         85 MRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFF  164 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHH
Confidence            999999999887 77778999999999999999999999999999999999999998999999998888777654 3455


Q ss_pred             ccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCCCCcccCCCchhhhHhh
Q 011416          197 FQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLML  276 (486)
Q Consensus       197 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  276 (486)
                      ++||+++...  +++.+.++                                                    ....+++.
T Consensus       165 ~~~~~~~~~~--~~~~~~~~----------------------------------------------------~~~~~~~~  190 (377)
T PRK11102        165 FIPETLPKER--RQPFHLRT----------------------------------------------------TIRNFASL  190 (377)
T ss_pred             hCCccCcccc--cCCCChHH----------------------------------------------------HHHHHHHH
Confidence            5666542110  00000000                                                    00133334


Q ss_pred             hchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHh
Q 011416          277 FSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTA  356 (486)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~  356 (486)
                      ++++.......   ..+......+....+.+.+.          .+..|.++.+.+.......++.+++.++.+++.||+
T Consensus       191 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----------~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~  257 (377)
T PRK11102        191 FRHKRVLGYML---ASGFSFAGMFSFLTAGPFVY----------IELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV  257 (377)
T ss_pred             HcChHHHHHHH---HHHHHHHHHHHHHHcCHHHH----------HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44433222221   11111122222222222211          123478889999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHh---h-hchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHHHH-HHH
Q 011416          357 GRKLSITIMFTLSCLFLLPLV---T-YQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGR-IGG  431 (486)
Q Consensus       357 g~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~g~  431 (486)
                      |+|+.+..+..+..+..+.+.   . ..+.+...+...+...+.+...+.......|..| +.++++.++.+.... ++.
T Consensus       258 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~  336 (377)
T PRK11102        258 GALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGA  336 (377)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHH
Confidence            999988877765444322222   1 1223333333333334444445555566777776 779999999877654 666


Q ss_pred             HHHHHHHH
Q 011416          432 MVCPLVAV  439 (486)
Q Consensus       432 ~~~~~i~g  439 (486)
                      .+++.+.+
T Consensus       337 ~~g~~~~~  344 (377)
T PRK11102        337 IVGALLSL  344 (377)
T ss_pred             HHHHHHHh
Confidence            66665543

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=100.00  E-value=7.1e-32  Score=256.84  Aligned_cols=426  Identities=16%  Similarity=0.106  Sum_probs=315.2

Q ss_pred             CCCchHHHHHHHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHH
Q 011416           18 GFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEA   97 (486)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~   97 (486)
                      +.+.+.|.+++..++..+........++.+.+.++++++-+.++++|+.++....+.+..|+.+.+.||+|.|.+.+.|.
T Consensus        39 PdGG~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~  118 (509)
T KOG2504|consen   39 PDGGWGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGG  118 (509)
T ss_pred             CCCCeeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHH
Confidence            36778899999988988888888888889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhhcCCCHHHHHHH-HHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 011416           98 LVTAGAGLLSSFSPNYITLITL-RCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRL  175 (486)
Q Consensus        98 ~~~~~~~~~~~~a~~~~~l~~~-r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~  175 (486)
                      ++.++|.++.++++++|++++. -++.|+|.|.. .+....+..++ +|+|+.+.|+..++.++|.++-|.+...+.+.+
T Consensus       119 ~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~  197 (509)
T KOG2504|consen  119 LVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKY  197 (509)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHh
Confidence            9999999999999999988765 57899999998 55555666555 688999999999999999999999999999999


Q ss_pred             CcHHHHHHhHHHHHHHHHHhhccCC-CchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCcc----
Q 011416          176 DWRWLLGLSSIPSFILLAFLGFQPE-SPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPE----  250 (486)
Q Consensus       176 ~w~~~f~~~~~~~~~~~~~~~~~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  250 (486)
                      |||+.+++.+.+.+..++....+++ .++....    +  .+..+.    .....+......+. ...+++....+    
T Consensus       198 G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~----~--~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  266 (509)
T KOG2504|consen  198 GWRGALLIFGGISLNVLVAGALLRPLSPPKKPN----E--EKDLRN----SAASVESTPKPVEL-RISERDSGLKKLSLS  266 (509)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch----h--hhhhcc----cccccccccccccc-ccccCCCCCCccccc
Confidence            9999999988888766555444433 3221111    1  111111    00000000000000 00000000000    


Q ss_pred             -chhhcccCCCCCcccCCCchh-hhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCC
Q 011416          251 -LVHLLSSNGGNKTTEGKSGLS-LFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQD  328 (486)
Q Consensus       251 -~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (486)
                       .....+..++.+....+.... .-.+++++   +.++..........+.++....+.+.+.           ...+.+.
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~---~~fl~~~~~~~~~~~g~~~p~~~l~~~~-----------~~~g~~~  332 (509)
T KOG2504|consen  267 NLATLKRGPDKWRNSPLQAFLSMLDLSLLKD---PKFLLLALSNLFAYLGFNVPFVYLPSYA-----------KSLGLSS  332 (509)
T ss_pred             chhhhhhCCccccccchhhhhhhhhHHHHcC---chHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hhcCCCh
Confidence             000000000011001111000 01234444   3444455555566677777777777665           4568999


Q ss_pred             chhHHHHHHHHhhHHHHHHHHHHHHHHhc--hhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhh
Q 011416          329 ANLYIDEFITSLAEIPGLLLAAILVDTAG--RKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIY  406 (486)
Q Consensus       329 ~~~~~~~~~~~i~~~~~~~~~g~l~dr~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (486)
                      .+++...+..++..++++++.|++.|+..  ++....++.+..+++.+.++..++.+.+.....++|++.+.........
T Consensus       333 ~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i  412 (509)
T KOG2504|consen  333 NDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVI  412 (509)
T ss_pred             hhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999976  5566677777778887777788888888999999999999988888899


Q ss_pred             ccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHHHHhccc
Q 011416          407 AAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH-QMTAVVLLVVVIVTSILSVMLIP  469 (486)
Q Consensus       407 ~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~  469 (486)
                      +.|+.+.++...++|+...+..++..++|.+.|++.|..+ |...|...+...+++....+...
T Consensus       413 ~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  413 LVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             HHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            9999999999999999999999999999999999999988 66677777777776665555443

>PRK09528 lacY galactoside permease; Reviewed

Probab=100.00  E-value=1.8e-30  Score=248.41  Aligned_cols=377  Identities=13%  Similarity=0.013  Sum_probs=243.9

Q ss_pred             HHHHHHHhhHhhhhchhch-hhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhh--
Q 011416           32 LGWVAEAMEIMILSFVGPT-VKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSS--  108 (486)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~--  108 (486)
                      +.+++..+......+.+|. +.+++|+|..+.|++.+++.+++.+++++.|+++||+|||+++.++..+.+++.....  
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~   96 (420)
T PRK09528         17 LFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIY   96 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Confidence            3445555544555555555 4556999999999999999999999999999999999999999887666554433211  


Q ss_pred             -cCC-----CHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Q 011416          109 -FSP-----NYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLL  181 (486)
Q Consensus       109 -~a~-----~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~f  181 (486)
                       .++     ......+.+++.|.+.... +....+. +.. ++++++.+|......++|..++|++++.+.+ .+|+..|
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f  173 (420)
T PRK09528         97 VFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYI-ERV-SRRSGFEYGRARMWGSLGWALCAFIAGILFN-INPQINF  173 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHH-HHH-HhhccccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhH
Confidence             111     1111222333344333322 2222222 222 3457788899999999999999999998876 5999999


Q ss_pred             HHhHHHHHHHHHHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCCC
Q 011416          182 GLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGN  261 (486)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (486)
                      ++.+++.++..+..++.+++++....++++++          .+                                    
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~------------------------------------  207 (420)
T PRK09528        174 WLGSGSALILLVLLFFAKPDAPSTAKVANALG----------AN------------------------------------  207 (420)
T ss_pred             HHHHHHHHHHHHHHhcccccccchhhhccchh----------cc------------------------------------
Confidence            99888777765555544333221000000000          00                                    


Q ss_pred             CcccCCCchhhhHhhhchhhHHHHHHHHHHH-HHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHh
Q 011416          262 KTTEGKSGLSLFLMLFSSKLARTTILLWLLL-FGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSL  340 (486)
Q Consensus       262 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  340 (486)
                         +.+...+..+..++++..+...+..... ............+.....           .+.+.+....+.......+
T Consensus       208 ---~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~g~~~~~~~~  273 (420)
T PRK09528        208 ---ASAVSLKDALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFF-----------ATPEQGTRVFGYLNSFQVF  273 (420)
T ss_pred             ---cccccHHHHHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHH-----------hccCcchHHHHHHHHHHHH
Confidence               0000011233344443322222211111 111111111112222111           1224555667888888888


Q ss_pred             hHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHh
Q 011416          341 AEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGA  420 (486)
Q Consensus       341 ~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (486)
                      ..+++.++.|++.||+++|+.+..+.++.++..+++.+.++.+.......+.++..+...+....+..+.+|++.+++..
T Consensus       274 ~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~  353 (420)
T PRK09528        274 LEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIY  353 (420)
T ss_pred             HHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeee
Confidence            89999999999999999999998888888887777777667766666666677776666677778889999999999887


Q ss_pred             HH-HHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhccccc
Q 011416          421 GA-ANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFE  471 (486)
Q Consensus       421 g~-~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  471 (486)
                      +. .+....+|..++|.+.|++.|..|+...+...+++.++..++.+...++
T Consensus       354 ~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~  405 (420)
T PRK09528        354 LVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSG  405 (420)
T ss_pred             eehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence            66 6777889999999999999999999999998888877766666555433

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=100.00  E-value=3.5e-31  Score=249.39  Aligned_cols=344  Identities=16%  Similarity=0.163  Sum_probs=243.1

Q ss_pred             HHHHHHHHHHHhhHhhhhchhch-hhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhh
Q 011416           28 AYAGLGWVAEAMEIMILSFVGPT-VKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLL  106 (486)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~  106 (486)
                      ...++.++..+......++..|. +++++|+|..+.+++.+++.+++.+++++.|+++||+|||+++.++.++.+++.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~   83 (366)
T TIGR00886         4 FFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLW   83 (366)
T ss_pred             HHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence            34667777888888999999995 99999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCC-CHHHHHHHHHHHHhccCcchhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc----------CC
Q 011416          107 SSFSP-NYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMP----------RL  175 (486)
Q Consensus       107 ~~~a~-~~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~----------~~  175 (486)
                      +++++ +++.+++.|+++|++.+...+..+++.|++|+++|+++.++.....++|..+++.+++.+.+          ..
T Consensus        84 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~  163 (366)
T TIGR00886        84 AGLAVQSYSVLLLLRLFIGIAGGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHL  163 (366)
T ss_pred             HHHHhhhHHHHHHHHHHHHHhchhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence            99999 99999999999999966556667889999999999999999998888888888777766553          34


Q ss_pred             CcHHHH-HHhHHHHHHH-HHHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchh
Q 011416          176 DWRWLL-GLSSIPSFIL-LAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVH  253 (486)
Q Consensus       176 ~w~~~f-~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (486)
                      +||+.| +..+++..+. .+...+.+|+|+..    + ++.+.        +....                ..+     
T Consensus       164 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~--------~~~~~----------------~~~-----  209 (366)
T TIGR00886       164 AWGWAFVIVPAGILLLPALLIFFVGADTPPGK----P-ATGKL--------SFKGA----------------RWS-----  209 (366)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHhcccCCccc----c-cchhc--------ccccc----------------ccc-----
Confidence            899999 4445444443 44445556655311    0 00000        00000                000     


Q ss_pred             hcccCCCCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHH
Q 011416          254 LLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYI  333 (486)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (486)
                                 ..+......++.++++..+   ......+.....++....+.+.+.+          +..+.++.+++.
T Consensus       210 -----------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~g~~~~~~~~  265 (366)
T TIGR00886       210 -----------VGTGALGDQLKVFRDRHTW---ILALLYSVTFGSFLGVSSIFAMFFK----------DQFGLSKVTAGA  265 (366)
T ss_pred             -----------ccchhHHHHHHHHhccchh---hHHHHHHHHHHHHHHHHHHHHHHHH----------HHcCCcHHHHHH
Confidence                       0000001223333333222   2222223333333444444444331          234788888898


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhh--hc--hhHHHHHHHHHHHHhhhhhhhhHhhhccc
Q 011416          334 DEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT--YQ--SNILTTGLLFGARMCVMGAFTVSLIYAAE  409 (486)
Q Consensus       334 ~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (486)
                      ......+..+++++++|++.||+++|+....+....+.+...+..  ..  +.+.......+..+..+...+..+....+
T Consensus       266 ~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  345 (366)
T TIGR00886       266 YASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPH  345 (366)
T ss_pred             HHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhccccchhhhcchh
Confidence            888889999999999999999999988777666665555544443  22  34444445555566666677778888888


Q ss_pred             cccccchhhHhHHHHHHHHHH
Q 011416          410 IYPTSVRSTGAGAANAMGRIG  430 (486)
Q Consensus       410 ~~~~~~~~~~~g~~~~~~~~g  430 (486)
                      ..| +++|+++|+.+..+++|
T Consensus       346 ~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       346 IFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             hch-hhcccHHHHHHHhccCC
Confidence            887 57999999999988765

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=100.00  E-value=9.4e-30  Score=240.14  Aligned_cols=355  Identities=8%  Similarity=-0.073  Sum_probs=254.5

Q ss_pred             HHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcch----HHHHHHHHHHHHhhhhhhc
Q 011416           34 WVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRR----MGFLGEALVTAGAGLLSSF  109 (486)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r----~~~~~~~~~~~~~~~~~~~  109 (486)
                      ++..........|.+|.+.+++|.|..++|++.+++.++..++++++|++.||+|||    +.+.++..+.  .......
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~   90 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFG   90 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHh
Confidence            455556667888899999999999999999999999999999999999999999984    3333322222  2233445


Q ss_pred             CCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHhHHHH
Q 011416          110 SPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPS  188 (486)
Q Consensus       110 a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~f~~~~~~~  188 (486)
                      ++|+|.+++.|++.|++.+.. +...+++.++  +++|+++.+......++|.++||++++.+.+++|||..|++.++..
T Consensus        91 ~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~  168 (382)
T PRK11128         91 AHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGV  168 (382)
T ss_pred             cccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHH
Confidence            689999999999999988877 6666666665  4568888899999999999999999999999999999998877655


Q ss_pred             HHHHHHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCCCCcccCCC
Q 011416          189 FILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKS  268 (486)
Q Consensus       189 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (486)
                      ++..+..++.||+++    ++++++.                                                   .+.
T Consensus       169 ~~~~~~~~~~~~~~~----~~~~~~~---------------------------------------------------~~~  193 (382)
T PRK11128        169 ASMLLGQLLRPTIMP----QGESRQQ---------------------------------------------------ESA  193 (382)
T ss_pred             HHHHHHHHccCCCCC----ccccccc---------------------------------------------------ccc
Confidence            544444444444311    0000000                                                   000


Q ss_pred             chhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHH
Q 011416          269 GLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLL  348 (486)
Q Consensus       269 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  348 (486)
                      ....++++++++..+......+..   ...+.....+.+.+.           ++.|.++.+.+.......++.++..++
T Consensus       194 ~~~~~~~i~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~-----------~~~g~s~~~~g~~~~~~~~~~~~~~~~  259 (382)
T PRK11128        194 GWPAWKALLKEPTVWRFLLCVSLL---QGSHAAYYGFSAIYW-----------QAAGYSASTIGYLWSLGVVAEVLIFAF  259 (382)
T ss_pred             ccchHHHHHcChhHHHHHHHHHHH---HHHhHhHHHHHHHHH-----------HHCCCCHhHHHHHHHHHHHHHHHHHHH
Confidence            011455666665444333322222   122222222333222           235788888898888888999999999


Q ss_pred             HHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHH-H
Q 011416          349 AAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAM-G  427 (486)
Q Consensus       349 ~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~  427 (486)
                      .+++.||+++|+.+..+.+..++..+.+...++.+...+..++.+++.+...+....+..+. +++++++..++.+.. .
T Consensus       260 ~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  338 (382)
T PRK11128        260 SNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAM  338 (382)
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHH
Confidence            99999999999999988888888877777677777777778888888888888888887776 455578889988744 4


Q ss_pred             HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 011416          428 RIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSIL  463 (486)
Q Consensus       428 ~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~  463 (486)
                      .+|..++|.+.|.+.|..|. ..++..+++.+++.+
T Consensus       339 ~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~~  373 (382)
T PRK11128        339 GGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPALF  373 (382)
T ss_pred             HHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHH
Confidence            67789999999999999886 455555555554433

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=100.00  E-value=3e-29  Score=238.42  Aligned_cols=366  Identities=16%  Similarity=0.070  Sum_probs=257.7

Q ss_pred             HHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhh-----cchH-HHHHHHHHHHHhh
Q 011416           31 GLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNY-----GRRM-GFLGEALVTAGAG  104 (486)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-----G~r~-~~~~~~~~~~~~~  104 (486)
                      ...++..+.........+|.+.++.|+|.+++|++..+...  .+..+++|+++||+     |||| ++..+.++.+++.
T Consensus         5 ~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~   82 (402)
T PRK11902          5 LLLGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASI   82 (402)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHH
Confidence            44567778888888889999999999999999999777776  68899999999999     8865 7888888888888


Q ss_pred             hhhhcC---CCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCcHH
Q 011416          105 LLSSFS---PNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPR-LDWRW  179 (486)
Q Consensus       105 ~~~~~a---~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~-~~w~~  179 (486)
                      .+.++.   ++++.+++..++.++..+.. ++..+++.|+.|+++|+++.++...+.++|.++++.++..+.+. .|||.
T Consensus        83 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~  162 (402)
T PRK11902         83 AAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGN  162 (402)
T ss_pred             HHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHH
Confidence            887776   35788888888888877777 77789999999999999999999999999999999999998885 59999


Q ss_pred             HHHHhHHHHHHHHHHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCC
Q 011416          180 LLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNG  259 (486)
Q Consensus       180 ~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (486)
                      .|++.++..++..+..++.||+++..   +++++.++.   .                                      
T Consensus       163 ~f~i~a~~~l~~~l~~~~~~e~~~~~---~~~~~~~~~---~--------------------------------------  198 (402)
T PRK11902        163 TYLLMAGLMLAGALTTLWAPEPEVPA---RPPRSLGEA---V--------------------------------------  198 (402)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCcccc---cccchhHHH---H--------------------------------------
Confidence            99998887776655556667654321   010000000   0                                      


Q ss_pred             CCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHH
Q 011416          260 GNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITS  339 (486)
Q Consensus       260 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (486)
                                ...++++++++..+..+.............+..  ..+.+           .++.|.++.+.+......+
T Consensus       199 ----------~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~--~~~~l-----------~~~~G~~~~~~g~~~~~~~  255 (402)
T PRK11902        199 ----------VGPLRDFFSRRGAWALLLLIVLYKLGDAFAGSL--STTFL-----------IRGAGFSAGEVGIVNKTLG  255 (402)
T ss_pred             ----------HHHHHHHHhCcCHHHHHHHHHHHHhHHHHHHHH--HHHHH-----------HHhcCCCHHHHHHHHhHHH
Confidence                      014555666665454444333322211111111  11111           1234788888888775544


Q ss_pred             -hhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHH---hhh-chhHHHHHHHH----HHHHhhhhhhhhHhhhcccc
Q 011416          340 -LAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPL---VTY-QSNILTTGLLF----GARMCVMGAFTVSLIYAAEI  410 (486)
Q Consensus       340 -i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  410 (486)
                       ++.+++.++++++.||+++|+.+..+..+..+..+.+   ... ++.+.......    ..++..+...+....++.+.
T Consensus       256 ~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  335 (402)
T PRK11902        256 LAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRS  335 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence             4688999999999999999988776666555443332   222 33343333332    34445555566777777777


Q ss_pred             ccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhccc
Q 011416          411 YPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIP  469 (486)
Q Consensus       411 ~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  469 (486)
                      .|.+    ..++.+....++..+++.+.|.+.|..|+...|.+.+.+++++.++.+...
T Consensus       336 ~~~~----~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~~~  390 (402)
T PRK11902        336 FSAT----QYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWLMR  390 (402)
T ss_pred             CcHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHh
Confidence            7654    345666666777877777899999999999888888888877766654443

>TIGR00889 2A0110 nucleoside transporter

Probab=100.00  E-value=1.2e-29  Score=241.03  Aligned_cols=381  Identities=12%  Similarity=0.008  Sum_probs=254.0

Q ss_pred             HHHHHHHHhhHhhh-hchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcc-hHHHHHHHHHHHHhhhhhh
Q 011416           31 GLGWVAEAMEIMIL-SFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGR-RMGFLGEALVTAGAGLLSS  108 (486)
Q Consensus        31 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~-r~~~~~~~~~~~~~~~~~~  108 (486)
                      ++.+++.+...... ++..+.+.+++|++..|+|++.+++.++..++++++|.++||+|+ |+++.++.++.+++..+..
T Consensus         8 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~   87 (418)
T TIGR00889         8 KFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAA   87 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            44455555655565 555566778899999999999999999999999999999999965 7788888888888888889


Q ss_pred             cCCCHHHHHHHHHHHHhccCcc-hhhhhhh----c----cccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHH
Q 011416          109 FSPNYITLITLRCLVGVGLGSG-HVFLSWF----L----EFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRW  179 (486)
Q Consensus       109 ~a~~~~~l~~~r~l~G~~~~~~-~~~~~~i----~----~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~  179 (486)
                      +.++++.+++.|++.|++.+.. +...++.    .    |......|.+..|      .+|.++++.+++.+....+|+ 
T Consensus        88 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~~-  160 (418)
T TIGR00889        88 QVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELSNI-  160 (418)
T ss_pred             HhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccchhH-
Confidence            9999999999999999987665 4433332    2    2233334555554      468888888888774333455 


Q ss_pred             HHHHhHHHHHHHHHHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCC
Q 011416          180 LLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNG  259 (486)
Q Consensus       180 ~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (486)
                      +|++.++..++..+..+++||+|+...++ +.+ .++..                                         
T Consensus       161 ~f~~~~~~~~~~~~~~~~~~e~~~~~~~~-~~~-~~~~~-----------------------------------------  197 (418)
T TIGR00889       161 QLYITAGSSALLGVFALTLPDIPVAKSTA-KMS-IKVML-----------------------------------------  197 (418)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCcccc-ccC-HHHHh-----------------------------------------
Confidence            45566665555555566778765311000 000 00000                                         


Q ss_pred             CCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHH
Q 011416          260 GNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITS  339 (486)
Q Consensus       260 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (486)
                                ....+.++|++....+....++.   .........+.+.+.+..+..+   ....+.+....+.......
T Consensus       198 ----------~~~~~~~~k~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~g~~~~~~~  261 (418)
T TIGR00889       198 ----------GLDAFILFKNKRMAIFFFFSMLL---GAPLQITNIFGNGFLHEFGRNP---EFADSFVVKNASIWMSLSQ  261 (418)
T ss_pred             ----------hhhHHHHhcCCCeeeHHHHHHHH---HhHHHHHHHhHHHHHHHhcccc---cccchhhhhhHHHHHHHHH
Confidence                      00122233333322222222221   1111111122222221000000   0000123456688888889


Q ss_pred             hhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhc-h---hHHHHHHHHHHHHhhhhhhhhHhhhccccccccc
Q 011416          340 LAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQ-S---NILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV  415 (486)
Q Consensus       340 i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (486)
                      +..+++.+..|++.||+|+|+++..+.++.++....+.... +   .+...+..++.+++.+...+....++.|.+|++.
T Consensus       262 i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~  341 (418)
T TIGR00889       262 FSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI  341 (418)
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Confidence            99999999999999999999999999988888766665522 1   2334455666777777777888889999999999


Q ss_pred             hhhHhHHHH-HHHHHHHHHHHHHHHHHHHhhc------cchHHHHHHHHHHHHHHHHhcccccccCCCc
Q 011416          416 RSTGAGAAN-AMGRIGGMVCPLVAVALVANCH------QMTAVVLLVVVIVTSILSVMLIPFETKGQEL  477 (486)
Q Consensus       416 ~~~~~g~~~-~~~~~g~~~~~~i~g~l~~~~g------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (486)
                      |++++|+.+ ....+|..++|.+.|.+.|+.|      |...|.+.+++.+++.++.+++.++++++-.
T Consensus       342 ~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~~~  410 (418)
T TIGR00889       342 RASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNAIK  410 (418)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccCCC
Confidence            999999997 5678999999999999999854      6677888888888888887777776655433

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00896 CynX cyanate transporter

Probab=100.00  E-value=2.4e-30  Score=242.10  Aligned_cols=332  Identities=17%  Similarity=0.165  Sum_probs=245.1

Q ss_pred             HhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcCCCHHHHHHHH
Q 011416           41 IMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLR  120 (486)
Q Consensus        41 ~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r  120 (486)
                      ....++.+|.+.+++|+|.++.|++.+.+.+++.+++++.|+++||+|||+++.++.++..++.+++ .+++++.+++.|
T Consensus        16 ~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~   94 (355)
T TIGR00896        16 LTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGT   94 (355)
T ss_pred             cccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHH
Confidence            3567889999999999999999999999999999999999999999999999999999988888877 778999999999


Q ss_pred             HHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CcHHHHHHhHHHHHHHHHHhhc
Q 011416          121 CLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRL--DWRWLLGLSSIPSFILLAFLGF  197 (486)
Q Consensus       121 ~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~--~w~~~f~~~~~~~~~~~~~~~~  197 (486)
                      ++.|++.+.. +.....+.|+++ ++|++++++.+.+.++|..+++.+++.+.+..  +||..|...+++.++...  .+
T Consensus        95 ~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~--~~  171 (355)
T TIGR00896        95 ALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALL--AW  171 (355)
T ss_pred             HHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH--HH
Confidence            9999999876 555567778885 68999999999999999999999998887654  399998877665443322  22


Q ss_pred             cCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCCCCcccCCCchhhhHhhh
Q 011416          198 QPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLF  277 (486)
Q Consensus       198 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  277 (486)
                      +|+.++.    ++++             ...                                    +    ....++++
T Consensus       172 ~~~~~~~----~~~~-------------~~~------------------------------------~----~~~~~~~~  194 (355)
T TIGR00896       172 IPQVRRR----VAAN-------------QTT------------------------------------T----RLTPVRIW  194 (355)
T ss_pred             hhhhccc----cCCC-------------CCC------------------------------------C----CCCCchhh
Confidence            3332210    0000             000                                    0    00122233


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHh-
Q 011416          278 SSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTA-  356 (486)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~-  356 (486)
                      +++..   +......+.....++....+.|.+.           ++.|.+..+.+...+...++.++++++.|++.||+ 
T Consensus       195 ~~~~~---~~~~~~~~~~~~~~~~~~~~lp~~~-----------~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~  260 (355)
T TIGR00896       195 RSPLA---WQVTVFFGLQSGLYYSLIGWLPAIL-----------ISHGASAATAGSLLALMQLAQAASALLIPALARRVK  260 (355)
T ss_pred             cCHhH---HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhc
Confidence            33322   2222223333444555555666544           23578888899999999999999999999999999 


Q ss_pred             chhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhhccccc-cccchhhHhHHHHHHHHHHHHHHH
Q 011416          357 GRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIY-PTSVRSTGAGAANAMGRIGGMVCP  435 (486)
Q Consensus       357 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~g~~~~~  435 (486)
                      +||+.+.++..+.+++.+.+....+.... ....+.+++.+..++...+...+.. +++.+++..++.+...+++..++|
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp  339 (355)
T TIGR00896       261 DQRGIVAVLAVLQLVGLCGLLFAPMHGLW-AWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGP  339 (355)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56666667777777766655543332222 2345678888888887777666544 456678999999999999999999


Q ss_pred             HHHHHHHHhhccc
Q 011416          436 LVAVALVANCHQM  448 (486)
Q Consensus       436 ~i~g~l~~~~g~~  448 (486)
                      .+.|++.|+.|.+
T Consensus       340 ~~~G~l~~~~g~~  352 (355)
T TIGR00896       340 LFVGVLHDISGNW  352 (355)
T ss_pred             HHHHHHHHHhccc
Confidence            9999999988754

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.97  E-value=1.6e-28  Score=235.22  Aligned_cols=376  Identities=16%  Similarity=0.038  Sum_probs=292.0

Q ss_pred             HHHHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhh
Q 011416           26 VLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGL  105 (486)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~  105 (486)
                      .+-.++++.++..+...+.....+.+..+..-|+...+++..+..+...+.++++|.++||++||++++.+.++.++..+
T Consensus        11 ~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~   90 (524)
T PF05977_consen   11 NFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVAL   90 (524)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Confidence            34445667777777777777778888888888999999999999999999999999999999999999999887766554


Q ss_pred             hhhcC-----CCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHH
Q 011416          106 LSSFS-----PNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRW  179 (486)
Q Consensus       106 ~~~~a-----~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~  179 (486)
                      +.++.     .+.+.+++.-++.|++.+.. |...+.+.|..|+++...+.++.+...++..++||.++|.+....|-.+
T Consensus        91 ~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~  170 (524)
T PF05977_consen   91 LLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAA  170 (524)
T ss_pred             HHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence            43332     47899999999999999998 8888999999999999999999999999999999999999998889999


Q ss_pred             HHHHhHHHHHHHHHHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCC
Q 011416          180 LLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNG  259 (486)
Q Consensus       180 ~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (486)
                      +|.+.++..++.++.....+.+++.   ++.+  .++..+.+++                                    
T Consensus       171 ~f~inalsfl~~i~~l~~~~~~~~~---~~~~--~e~~~~~l~~------------------------------------  209 (524)
T PF05977_consen  171 AFLINALSFLISILALLRWKPPPPP---SSLP--RERFFSALRE------------------------------------  209 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHccccccc---cccc--hhhhhhhHHH------------------------------------
Confidence            9988877655544443333322110   0011  1111111111                                    


Q ss_pred             CCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHH
Q 011416          260 GNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITS  339 (486)
Q Consensus       260 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (486)
                                  .++.+++++..+..+.............+   ...|.+.          .+..+.++...|++.+..+
T Consensus       210 ------------G~ryv~~~~~l~~~l~~~~~~~l~~~a~~---aLlPl~a----------~~~l~~~a~~yGll~a~~g  264 (524)
T PF05977_consen  210 ------------GLRYVRSSPPLRSVLLRSFLFNLFASAVW---ALLPLFA----------RDVLGGGASGYGLLLAAFG  264 (524)
T ss_pred             ------------HHHHHhcchHHHHHHHHHHHHHHhhhHHH---HhhhHHH----------HHHhCCcHHHHHHHHHHHH
Confidence                        44555555554544443333322222222   2233332          1234788889999999999


Q ss_pred             hhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhH
Q 011416          340 LAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTG  419 (486)
Q Consensus       340 i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (486)
                      ++.++|.++.+++.+|+++++++..+.++.+++++.+.+.++.+...+.+++.|++.....+...+...+..|++.||++
T Consensus       265 vGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv  344 (524)
T PF05977_consen  265 VGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRV  344 (524)
T ss_pred             HHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHH
Confidence            99999999999999999999998889888888888888888888888888889999888888999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhc
Q 011416          420 AGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVML  467 (486)
Q Consensus       420 ~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  467 (486)
                      ++++.+....+..+|..+.|.+.+..|....+.+.++..+++.++.+.
T Consensus       345 ~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~  392 (524)
T PF05977_consen  345 FSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALR  392 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999888887777666555555443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.97  E-value=8.7e-30  Score=221.00  Aligned_cols=353  Identities=15%  Similarity=0.069  Sum_probs=242.5

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHhccCcchhhhhh
Q 011416           57 LSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSW  136 (486)
Q Consensus        57 ~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~  136 (486)
                      .+..-.|.+.|.|.+++.+.++.+|.++||+|||+++.++++..+++..+.+.+.|+..++++|++.|+..|...+..++
T Consensus        65 ~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v~rAi  144 (451)
T KOG2615|consen   65 ASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLSVIRAI  144 (451)
T ss_pred             ccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHH
Confidence            34456799999999999999999999999999999999999999999999999999977777799999999999999999


Q ss_pred             hccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCcHHHHHH----hHHHHHH-HHHHhhccCCCchhhhhc
Q 011416          137 FLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMP---RLDWRWLLGL----SSIPSFI-LLAFLGFQPESPRYLCLK  208 (486)
Q Consensus       137 i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~---~~~w~~~f~~----~~~~~~~-~~~~~~~~~e~~~~~~~~  208 (486)
                      ++|.+++|+|+++++.+...+++|.++||.+|+++..   ..| +++|..    ..++... .....+++||+-+...++
T Consensus       145 isdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g-~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~rk~~  223 (451)
T KOG2615|consen  145 ISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISG-SYPFALPCLLVFILAAGDVTFFPWFLPETLPLRKRN  223 (451)
T ss_pred             HHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhc-cCchHHHHHHHHHHHHHHHHHHHHhCCccccchhhc
Confidence            9999999999999999999999999999999999977   222 112222    2222222 344567788874321111


Q ss_pred             CChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCCCCcccCCCchhhhHhhhchhhHHHHHHH
Q 011416          209 GRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILL  288 (486)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  288 (486)
                      +...+..+..+...+..+                               .+         ...... ..+++.....+..
T Consensus       224 ~~~~~~~~~~~~~~~~~~-------------------------------~~---------~~~~v~-~lrn~p~~~~i~~  262 (451)
T KOG2615|consen  224 DEHSTLQEAADDRLALLK-------------------------------FA---------RIFKVA-ALRNPPLLDFISV  262 (451)
T ss_pred             ccccchhhhhhhhhhhcc-------------------------------hh---------hhhhhh-hhcCccccchHHH
Confidence            000000000000000000                               00         000000 0111111111111


Q ss_pred             ----HHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhc--hhHHH
Q 011416          289 ----WLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAG--RKLSI  362 (486)
Q Consensus       289 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g--~~~~~  362 (486)
                          ...++.....+-........+.          .+++++++.+.|.+....++.+.+......+..+|.+  .+-.+
T Consensus       263 ~~i~~l~~~ly~~l~s~~~~t~~~l~----------~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l  332 (451)
T KOG2615|consen  263 LRIFGLHYFLYLELFSGLENTVLFLT----------HGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVL  332 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHhh----------cCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHH
Confidence                1111222222222222222221          2567899999999998888888888777777777766  56666


Q ss_pred             HHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 011416          363 TIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALV  442 (486)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~  442 (486)
                      ..+..++.-.++.+........+.....+..+......+....+.....|+++||+.+|+....+.++.++||.+.|.+.
T Consensus       333 ~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~  412 (451)
T KOG2615|consen  333 LFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIF  412 (451)
T ss_pred             HHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeE
Confidence            66677766677777766667777888888888888888999999999999999999999999999999999999998776


Q ss_pred             Hhh-ccchHHHHHHHHHHHH
Q 011416          443 ANC-HQMTAVVLLVVVIVTS  461 (486)
Q Consensus       443 ~~~-g~~~~~~~~~~~~~~~  461 (486)
                      .+. +.+.++...+.+.++.
T Consensus       413 ~Ws~~~~~a~~~~~~L~~~~  432 (451)
T KOG2615|consen  413 SWSQGAQPAYIAWGALLLIP  432 (451)
T ss_pred             EEecCCCceeeehHHHHHHH
Confidence            643 2334444444444444

>TIGR00901 2A0125 AmpG-related permease

Probab=99.97  E-value=1.2e-28  Score=230.81  Aligned_cols=321  Identities=14%  Similarity=0.119  Sum_probs=234.5

Q ss_pred             HhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhh-----cchHH-HHHHHHHHHHhhhhhhcC---C
Q 011416           41 IMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNY-----GRRMG-FLGEALVTAGAGLLSSFS---P  111 (486)
Q Consensus        41 ~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-----G~r~~-~~~~~~~~~~~~~~~~~a---~  111 (486)
                      ....++..|.+.+|+|+|.+++|++.+. .+...+ .+++|+++||+     ||||. ++.+.++.++...+.++.   .
T Consensus         4 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~   81 (356)
T TIGR00901         4 LGLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPST   81 (356)
T ss_pred             chhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcch
Confidence            3456778899999999999999999765 455555 89999999998     89886 567788888887777777   4


Q ss_pred             CHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--------cHHHHH
Q 011416          112 NYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLD--------WRWLLG  182 (486)
Q Consensus       112 ~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~--------w~~~f~  182 (486)
                      +.+.+....++.+++.+.. ++..+++.|++|+|+|+++.++...+.++|.++++.+++.+.+..+        ||..|+
T Consensus        82 ~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~  161 (356)
T TIGR00901        82 DLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFF  161 (356)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHH
Confidence            5666777778888887777 7777899999999999999999999999999999999999988888        999999


Q ss_pred             HhHHHHHHHHHHhhc-cCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCCC
Q 011416          183 LSSIPSFILLAFLGF-QPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGN  261 (486)
Q Consensus       183 ~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (486)
                      +.++..++..+..++ .||+++.   ++++++..+.   .                                        
T Consensus       162 i~ai~~l~~~~~~~~~~~e~~~~---~~~~~~~~~~---~----------------------------------------  195 (356)
T TIGR00901       162 WTALLILPGLLVTLFLAKEPQED---ASVPKPLTQA---V----------------------------------------  195 (356)
T ss_pred             HHHHHHHHHHHHHHHhccCCCcc---cccchhHHHH---H----------------------------------------
Confidence            988877776555443 4553221   0000000000   0                                        


Q ss_pred             CcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHH-h
Q 011416          262 KTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITS-L  340 (486)
Q Consensus       262 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i  340 (486)
                              ...++++++++..+..+......+.....++....+.+.+.           .+.|.++.+.+......+ +
T Consensus       196 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----------~~~g~~~~~~g~~~~~~~~~  256 (356)
T TIGR00901       196 --------LKPIREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFL-----------LDMGFSKEEIALVAKINGLL  256 (356)
T ss_pred             --------HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHcCCCHHHHHHHhHHHHHH
Confidence                    00344455544333344344444444455555555555443           225788888887776655 5


Q ss_pred             hHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhh-----------chhHHHHHHHHHHHHhhhhhhhhHhhhccc
Q 011416          341 AEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY-----------QSNILTTGLLFGARMCVMGAFTVSLIYAAE  409 (486)
Q Consensus       341 ~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (486)
                      ..+++.+++|++.||+|+|+.+..+.++.++....+.+.           ++.+......++.+++.+..++...++..|
T Consensus       257 ~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  336 (356)
T TIGR00901       257 GAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSK  336 (356)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            778999999999999999998888887777665544432           233445555667788888999999999999


Q ss_pred             cccccchhhHhHHHHHHHH
Q 011416          410 IYPTSVRSTGAGAANAMGR  428 (486)
Q Consensus       410 ~~~~~~~~~~~g~~~~~~~  428 (486)
                      .+|+++||+.+|+.+...+
T Consensus       337 ~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       337 LSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             hcCCCccHHHHHHHHHHHh
Confidence            9999999999999887654

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.97  E-value=4e-28  Score=213.78  Aligned_cols=366  Identities=14%  Similarity=0.116  Sum_probs=281.3

Q ss_pred             HHHHHHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHh
Q 011416           24 CFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGA  103 (486)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~  103 (486)
                      ...+..+....++.++......+++|.+++.|+++..|.+++..+++.+|.+.+++.|++.+|+|+|+.+++|+.+.+++
T Consensus        12 ~~~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg   91 (422)
T COG0738          12 KLAFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVG   91 (422)
T ss_pred             eeHHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            34555666667888888889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhh---cCCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcC-----
Q 011416          104 GLLSS---FSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPR-----  174 (486)
Q Consensus       104 ~~~~~---~a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~-----  174 (486)
                      +.+..   ...+|..++++-++.|.|.+.. ....++++...++++-.+.+++.+..+++|.+++|++++.+..+     
T Consensus        92 ~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~  171 (422)
T COG0738          92 AALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALT  171 (422)
T ss_pred             HHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhc
Confidence            99885   5578999999999999999999 88899999999999999999999999999999999999988762     


Q ss_pred             --------------CCcHHHHHHhHHHHHHHHHHhhc--cCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhcc
Q 011416          175 --------------LDWRWLLGLSSIPSFILLAFLGF--QPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARR  238 (486)
Q Consensus       175 --------------~~w~~~f~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (486)
                                    ..||.+|...+...+++.+....  .|+.+.....+.+                            
T Consensus       172 ~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~~~~----------------------------  223 (422)
T COG0738         172 MSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSLGA----------------------------  223 (422)
T ss_pred             cCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcccccccc----------------------------
Confidence                          23788887777666665444333  2332211000000                            


Q ss_pred             ccCCCCCCCCccchhhcccCCCCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCC
Q 011416          239 STLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRS  318 (486)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (486)
                                                   .+.....+++++++.+...+..+++.+   .......+.+.+.        
T Consensus       224 -----------------------------~~~~~~~~l~~~~~~~~gvl~~FlYVG---~Eva~gsfl~~y~--------  263 (422)
T COG0738         224 -----------------------------SGSAGLSSLFQNKHLRLGVLAIFLYVG---AEVAIGSFLVSYL--------  263 (422)
T ss_pred             -----------------------------cccchHHHHHhChHHHHHHHHHHHHHh---HHHHHHHHHHHHH--------
Confidence                                         000034455666665555544444443   3333334444433        


Q ss_pred             CccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhh
Q 011416          319 PLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMG  398 (486)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (486)
                        .+..+.+..++....+....+.++|++++.++..|+...+.+.....+..+.++.....++. .......+.|++++.
T Consensus       264 --~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~-v~~~~l~~ig~F~si  340 (422)
T COG0738         264 --EELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGV-VALYALFLIGLFNSI  340 (422)
T ss_pred             --HhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcCh-HHHHHHHHHHHHhHH
Confidence              12257899999999999999999999999999999999999988777776666666666554 445566777899999


Q ss_pred             hhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Q 011416          399 AFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSI  462 (486)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~  462 (486)
                      .+|...+...+..| ++ ....|....+...|+++.|.+.|++.|..|....+.....+|.+..
T Consensus       341 mfPTIfslal~~l~-~~-ts~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV  402 (422)
T COG0738         341 MFPTIFSLALKNLG-EH-TSVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYV  402 (422)
T ss_pred             HHHHHHHHHHhccC-cc-ccccceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            99999999999998 33 3334445566678999999999999999998777665555554444

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.97  E-value=3.4e-28  Score=230.95  Aligned_cols=371  Identities=15%  Similarity=0.081  Sum_probs=252.6

Q ss_pred             HHHHHHHHHHhhHhhhhchhchh-hhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhh
Q 011416           29 YAGLGWVAEAMEIMILSFVGPTV-KSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLS  107 (486)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~  107 (486)
                      .+...+++.+.......+.+|.+ .+++|.+..+.|++.+++.+++.+++++.|+++||+|||+.++.+....+++....
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~   85 (396)
T TIGR00882         6 MFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPF   85 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence            34445566666666777777765 56799999999999999999999999999999999999999988776665544322


Q ss_pred             ---hcCC-----CHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcH
Q 011416          108 ---SFSP-----NYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWR  178 (486)
Q Consensus       108 ---~~a~-----~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~  178 (486)
                         .+.+     .+..+++.|++.|++.+.. +....+..+..  ++++...|......++|.+++|.+++.+.+ .+||
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~  162 (396)
T TIGR00882        86 FIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS-IDPQ  162 (396)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc-cCch
Confidence               2222     2334566788899888877 56656666643  334567788888889999999999998765 6999


Q ss_pred             HHHHHhHHHHHHHHHHhhcc-CCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhccc
Q 011416          179 WLLGLSSIPSFILLAFLGFQ-PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSS  257 (486)
Q Consensus       179 ~~f~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (486)
                      .+|++.+++.++..+..+.. ||+|+.       ++.++.       .+.                              
T Consensus       163 ~~f~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~-------~~~------------------------------  198 (396)
T TIGR00882       163 IVFWLGSGFALILMLLLMFAKPKAPSS-------ATVANA-------LGA------------------------------  198 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCchh-------hhhhcc-------ccc------------------------------
Confidence            99999888877765444443 333210       000000       000                              


Q ss_pred             CCCCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHH----HHHHHhhhccccccCCCCccccCCCCCchhHH
Q 011416          258 NGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYA----VVLLISELSSLDTRCRSPLMFSHHPQDANLYI  333 (486)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (486)
                            .+++.+.++.+++++++..+.....   .+.....+..    ...+.+.+.           ...+.+....+.
T Consensus       199 ------~~~~~~~~~~~~~l~~~~~~~~~l~---~~~~~~~~~~~~~~~~~y~~~~~-----------~~~~~~~~~~g~  258 (396)
T TIGR00882       199 ------NASAFSLKLALELFRQRKFWMFVLY---VVGVACVYDVFDQQFANFFTSFF-----------ATPQQGTRVFGY  258 (396)
T ss_pred             ------ccCCCCHHHHHHHHcCCcHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhc-----------cccccchHHHHH
Confidence                  0000011244555555543322222   1111122211    222222221           112344556677


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhhccccccc
Q 011416          334 DEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPT  413 (486)
Q Consensus       334 ~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (486)
                      ......+...++.+..+++.||+++|+.+.++..+.++........++.+......++.+++..........+..+..++
T Consensus       259 ~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~  338 (396)
T TIGR00882       259 VTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDV  338 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            88888888899999999999999999999888888888777666666666666666666666555555556667777888


Q ss_pred             cchhhHhHH-HHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHh
Q 011416          414 SVRSTGAGA-ANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVM  466 (486)
Q Consensus       414 ~~~~~~~g~-~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  466 (486)
                      +.+++..+. .+....+|+.++|.+.|++.|..|+..+|.+.+++.++..+...
T Consensus       339 ~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~  392 (396)
T TIGR00882       339 RLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISV  392 (396)
T ss_pred             ceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            888887776 67788999999999999999999999999988888777665543

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.97  E-value=1.9e-28  Score=262.66  Aligned_cols=368  Identities=12%  Similarity=-0.047  Sum_probs=251.2

Q ss_pred             HHHHHHHHHHHhhHhhhhchh-chhhhhcCCCc-chhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHH---HHHHHHH
Q 011416           28 AYAGLGWVAEAMEIMILSFVG-PTVKSEWNLSS-TEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLG---EALVTAG  102 (486)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~-~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~---~~~~~~~  102 (486)
                      ...++..+.+++....+..+. ..+..+.+.+. ...++..+++.+.+.++++++|.++||+|||+++..   ..++..+
T Consensus        18 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~   97 (1140)
T PRK06814         18 WTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAA   97 (1140)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHH
Confidence            333444444455444444333 34444444433 447888999999999999999999999999997643   2223333


Q ss_pred             hhhhhhcCCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Q 011416          103 AGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLL  181 (486)
Q Consensus       103 ~~~~~~~a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~f  181 (486)
                      ..+.....+|+++++++|+++|++.+.. ++..+++.+++++++|++++|+.+++.++|.++||++++++.+..+|++.|
T Consensus        98 ~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~  177 (1140)
T PRK06814         98 LAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILV  177 (1140)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence            3333334589999999999999999988 888899999999999999999999999999999999999999999999999


Q ss_pred             HHhHHHHHHHHHHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCCC
Q 011416          182 GLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGN  261 (486)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (486)
                      +..++..++.++..+++|+++..... .+.+.  +..+..                                        
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~----------------------------------------  214 (1140)
T PRK06814        178 ALLMGIAVLGWLASLFIPKTGNAAPD-LKIDR--NIIRST----------------------------------------  214 (1140)
T ss_pred             HHHHHHHHHHHHHHhhCCCCCCCCCC-Ceecc--chHHHH----------------------------------------
Confidence            55555555556666667665421100 00000  000000                                        


Q ss_pred             CcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhh
Q 011416          262 KTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLA  341 (486)
Q Consensus       262 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  341 (486)
                              ...++.+++++..+...+.   .+...+.+.....+.|.+.          .+..|.++...+...+..+++
T Consensus       215 --------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~p~~~----------~~~~g~~~~~~g~~~~~~~~g  273 (1140)
T PRK06814        215 --------ITLLKYAKADKRIWLAILG---ISWFWLVGAVVLSQLPLLA----------KETLGGDENVATLFLAVFSVG  273 (1140)
T ss_pred             --------HHHHHHHhcCchHHHHHHH---HHHHHHHHHHHHHHhHHHH----------HHHcCCchHHHHHHHHHHHHH
Confidence                    0134445544443333222   2222222233333444333          123478888999999999999


Q ss_pred             HHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhh--------------------chhHHHHHHHHHHHHhhhhhhh
Q 011416          342 EIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY--------------------QSNILTTGLLFGARMCVMGAFT  401 (486)
Q Consensus       342 ~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~  401 (486)
                      .++|.++.|++.|+..+++.+..+.++.+++.+.+.+.                    .+.+...+..++.+++.+...+
T Consensus       274 ~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  353 (1140)
T PRK06814        274 VAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIV  353 (1140)
T ss_pred             HHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHH
Confidence            99999999999988776665555554444443333221                    4555666677778888888888


Q ss_pred             hHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHH
Q 011416          402 VSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANC-HQMTAVVLLVVVIV  459 (486)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~-g~~~~~~~~~~~~~  459 (486)
                      ...+++.+..|++.+|+++|+.+++..++..+++.+.|.+.+.. ++...+++.+.+.+
T Consensus       354 ~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~  412 (1140)
T PRK06814        354 PLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALANL  412 (1140)
T ss_pred             HHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999987543 34444444444333

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.97  E-value=1.7e-27  Score=229.30  Aligned_cols=417  Identities=11%  Similarity=-0.016  Sum_probs=265.9

Q ss_pred             HHHHHHHHHHHHhhHhhhhchhchhh-hh--cCCCcchhHHHHHHHHHHHHHHHHHHhhhhhh-hcchHHHHHHHHHHHH
Q 011416           27 LAYAGLGWVAEAMEIMILSFVGPTVK-SE--WNLSSTEESLITTSVFAGLVVGAYAWGLVADN-YGRRMGFLGEALVTAG  102 (486)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~G~r~~~~~~~~~~~~  102 (486)
                      +..+++..+.+.+..+...+.+|.+. ++  +|++..+.|++.+.+.+++.++++++|+++|| +|||+++.++.++.++
T Consensus        12 ~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~   91 (475)
T TIGR00924        12 LFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLML   91 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHH
Confidence            33444556666666666666666664 44  89999999999999999999999999999999 8999999999999999


Q ss_pred             hhhhhhcCCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcH
Q 011416          103 AGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSN---RGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWR  178 (486)
Q Consensus       103 ~~~~~~~a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~  178 (486)
                      +.++.+++++++.+++.|++.|+|.|.. +...++++|++|+++   |+++.++.+.+.++|.++||++++.+.++.||+
T Consensus        92 g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~  171 (475)
T TIGR00924        92 GHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYH  171 (475)
T ss_pred             HHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChH
Confidence            9999999999999999999999999988 777889999998764   888999999999999999999999999989999


Q ss_pred             HHHHHhHHHHHHHHHHhhccC----CCchhhhhcCChHHHHHHHHHH-----------HH--hcCCCCCCchhhhccccC
Q 011416          179 WLLGLSSIPSFILLAFLGFQP----ESPRYLCLKGRTAEAHRALEKI-----------AQ--VNKTKLPNGKLVARRSTL  241 (486)
Q Consensus       179 ~~f~~~~~~~~~~~~~~~~~~----e~~~~~~~~~~~~~~~~~~~~~-----------~~--~~~~~~~~~~~~~~~~~~  241 (486)
                      +.|.+.++..++..+.+.+.+    +.|+.  .++..++.++.....           ..  ...+.........     
T Consensus       172 ~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  244 (475)
T TIGR00924       172 VGFNLAAVGMVIGLLTFFAGRHMLRDIGSV--PDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLM-----  244 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHcccccccCCCC--CCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH-----
Confidence            999988765555444333333    22210  000001100000000           00  0000000000000     


Q ss_pred             CCCCCCCccchhhcccCCCCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCcc
Q 011416          242 PTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLM  321 (486)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (486)
                             .......... ..+..+.     ......+++. ..++.+++........+.......+.+.....      .
T Consensus       245 -------~~~~~~~~~~-~~~~~~~-----~~~~~~~~~~-~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~------~  304 (475)
T TIGR00924       245 -------TVTLAVIIFF-FRLAFKP-----RLDAVARNKM-YAYIVLFLEAVVFWVLYAQMPTSLNFFADNNM------H  304 (475)
T ss_pred             -------HHHHHHHHHH-HHHHHhc-----cCCHHHHhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc------c
Confidence                   0000000000 0000000     0000001111 12222222222222222222221221110000      0


Q ss_pred             ccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhch-----hHHH--HHHHHHHHHHHHHHhh---------hchhHHH
Q 011416          322 FSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGR-----KLSI--TIMFTLSCLFLLPLVT---------YQSNILT  385 (486)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~-----~~~~--~~~~~~~~~~~~~~~~---------~~~~~~~  385 (486)
                      ...+......+.......+..++..++..++..|.+|     +...  .++.++.++++..+..         ..+.++.
T Consensus       305 ~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~  384 (475)
T TIGR00924       305 HEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFM  384 (475)
T ss_pred             ccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHH
Confidence            0001111235667777777777777665544444433     3333  6777887777766653         3467778


Q ss_pred             HHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Q 011416          386 TGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSV  465 (486)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~  465 (486)
                      ....++.+++.....|..+++..+..|++.||+++|+......+|..+++.+.....+..++...+...+.++++..++.
T Consensus       385 i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  464 (475)
T TIGR00924       385 VLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVM  464 (475)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHH
Confidence            88888999999999999999999999999999999999999999999999998877776677777777777777666666


Q ss_pred             hcccc
Q 011416          466 MLIPF  470 (486)
Q Consensus       466 ~~~~~  470 (486)
                      ++..|
T Consensus       465 ~~~~~  469 (475)
T TIGR00924       465 ALMVP  469 (475)
T ss_pred             HHHHH
Confidence            65543

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.97  E-value=1.8e-27  Score=256.38  Aligned_cols=344  Identities=12%  Similarity=-0.007  Sum_probs=245.4

Q ss_pred             HhhHhhhhchhchhhhhcCCCcc--hhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhh---hcCCC
Q 011416           38 AMEIMILSFVGPTVKSEWNLSST--EESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLS---SFSPN  112 (486)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~s~~--~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~---~~a~~  112 (486)
                      ..+......+.+.+..+++.+.+  ..+++.+++.+++.++++++|+++||+|||++++++.++.+++.++.   ..+++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~  102 (1146)
T PRK08633         23 FNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGW  102 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            34444555556666667776544  46999999999999999999999999999999999887665555443   34578


Q ss_pred             HHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcC--------C-CcHHHHH
Q 011416          113 YITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPR--------L-DWRWLLG  182 (486)
Q Consensus       113 ~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~--------~-~w~~~f~  182 (486)
                      ++.+++.|+++|++.+.. ++..+++.|++++++|++++|+...+.++|.++|+.+++++.+.        . +|++.+.
T Consensus       103 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~  182 (1146)
T PRK08633        103 FWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAG  182 (1146)
T ss_pred             HHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHH
Confidence            999999999999999988 77789999999999999999999999999999999999998765        2 3444444


Q ss_pred             HhHHHH-HHHHHHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCCC
Q 011416          183 LSSIPS-FILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGN  261 (486)
Q Consensus       183 ~~~~~~-~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (486)
                      +..+.. ++.++..+.+||.|+....+++.++ ....+                                          
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------------------------------------------  219 (1146)
T PRK08633        183 LVLLAVAVLGLIFAYRLPKVPAAAPEVFDKKK-YLFPK------------------------------------------  219 (1146)
T ss_pred             HHHHHHHHHHHHHHhcCcCCCCCCcccccccc-cccHH------------------------------------------
Confidence            433333 3334445566776542111000000 00000                                          


Q ss_pred             CcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCc-hhHHHHHHHHh
Q 011416          262 KTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDA-NLYIDEFITSL  340 (486)
Q Consensus       262 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i  340 (486)
                            .....++.+++++..+..++...+..   ...+....+.+.+.          .+..+.+.. ..++......+
T Consensus       220 ------~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~----------~~~~g~s~~~~~g~~~~~~~i  280 (1146)
T PRK08633        220 ------LLWRNLKLLRSDRVLWLAIIGLSYFW---FISQLAQANFPAYA----------KEVLGLDNTFQVQYLLAASAI  280 (1146)
T ss_pred             ------HHHHHHHHHhcCcHHHHHHHHHHHHH---HHHHHHHHhhHHHH----------HHHhCCCcHHHHHHHHHHHHH
Confidence                  00113445555544333322222211   11122222223222          123467777 88899999999


Q ss_pred             hHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHh
Q 011416          341 AEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGA  420 (486)
Q Consensus       341 ~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (486)
                      +.+++.++.+++.||+++++.+.++.++.+++.+.+....+.+...+..++.+++.+...+...+++.+..|++.||+++
T Consensus       281 g~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~  360 (1146)
T PRK08633        281 GIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVL  360 (1146)
T ss_pred             HHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhh
Confidence            99999999999999999988888888877777777766666666677778888888888888899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 011416          421 GAANAMGRIGGMVCPLVAVALVA  443 (486)
Q Consensus       421 g~~~~~~~~g~~~~~~i~g~l~~  443 (486)
                      |+.+.+.+++..+++.+.+.+..
T Consensus       361 ~~~~~~~~lg~~~~~~~~~~l~~  383 (1146)
T PRK08633        361 AANNFLQNVGMLLFLALTTLFSG  383 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999888877765544

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.96  E-value=3.6e-28  Score=221.82  Aligned_cols=357  Identities=13%  Similarity=0.051  Sum_probs=243.1

Q ss_pred             HhhHhhhhchhchhhhhcCCCcch-hHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcCCCHHHH
Q 011416           38 AMEIMILSFVGPTVKSEWNLSSTE-ESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITL  116 (486)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~s~~~-~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a~~~~~l  116 (486)
                      .-.+.+.+.+.|.+.+++|+|.+| .|.+.++++.+|++++++.|+++||+|.|+++.++.+.+++.+++.++++++..+
T Consensus        39 ~e~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L  118 (511)
T TIGR00806        39 AQFRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHM  118 (511)
T ss_pred             HHhhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345888899999999999999999 9999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCcchhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHh---HHHHHHHHH
Q 011416          117 ITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLS---SIPSFILLA  193 (486)
Q Consensus       117 ~~~r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~f~~~---~~~~~~~~~  193 (486)
                      .+.|++.|++.|...+...++..|+|+++|+++.|+..++..+|.++++++++. ...+|||..+.+.   .....+.++
T Consensus       119 ~i~R~llGvaEA~~~A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a~~  197 (511)
T TIGR00806       119 QLMEVFYSVTMAARIAYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFMTFSVF  197 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHHHH
Confidence            999999999999888667899999999999999999999999999999999999 4568999866544   223333466


Q ss_pred             HhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCCCCcccC------C
Q 011416          194 FLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEG------K  267 (486)
Q Consensus       194 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~  267 (486)
                      +.+++|..++..--+++.+....        ..             .+.++...+..       .+..+..+.      .
T Consensus       198 ~a~~LP~~~~sl~f~~~~~~~~~--------~~-------------~~~~~~~~~~~-------~~~~~~~~~~~~~~~~  249 (511)
T TIGR00806       198 LALFLKRPKRSLFFNRLEDVRGA--------LP-------------CELDQMVPGPG-------GKLEDYLGTCRDSFLV  249 (511)
T ss_pred             HHHhCCCCchhhhhccccccccc--------cc-------------cccccCCCCCc-------cccchhhhhhhhHHHH
Confidence            67788855443222211100000        00             00000000000       000000000      0


Q ss_pred             CchhhhHhhhchhhHHHHHHHHHH-HHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHH
Q 011416          268 SGLSLFLMLFSSKLARTTILLWLL-LFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGL  346 (486)
Q Consensus       268 ~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  346 (486)
                      .-...++...+++.    ++.+.+ +......++.+..|.+.+-+...          .-.+..-|..-.+..+.+.+..
T Consensus       250 ~l~~~~~~~y~n~~----vl~WSlWwa~a~~g~~qv~~Y~Q~LW~~v~----------~~~~~yNG~veA~~tllga~~a  315 (511)
T TIGR00806       250 RMLSELVTIYRNPQ----LLLWSLWWVFNSAGYYLITYYVHTLWGTLD----------ESLNKYNGAVDAASTLLGAITS  315 (511)
T ss_pred             HHHHHHHHHhcCcc----hhhhhHHHHHHhhHHHHHHHHHHHHHHHcC----------CCccccCCHHHHHHHHHHHHHH
Confidence            00111222222222    122222 22334444555555554432211          0001122344455566667778


Q ss_pred             HHHHHHHHHhch--hHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHH
Q 011416          347 LLAAILVDTAGR--KLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAAN  424 (486)
Q Consensus       347 ~~~g~l~dr~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  424 (486)
                      +..|++-.++.+  ...+.+..++.+..++++...++.|..++..+++........++...-+++....+..|..+|+.+
T Consensus       316 ~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~iA~~L~~~~~aLvFGiNt  395 (511)
T TIGR00806       316 FIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIYQFLVPIATFQIASSLSKELCALVFGINT  395 (511)
T ss_pred             HHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceEEEEecHH
Confidence            888888655544  234445555566666777778899999999999999988888998888888888887899999988


Q ss_pred             HHHHHHHHHHHHH
Q 011416          425 AMGRIGGMVCPLV  437 (486)
Q Consensus       425 ~~~~~g~~~~~~i  437 (486)
                      .+.-+-..+-..+
T Consensus       396 fvAl~LQtilT~i  408 (511)
T TIGR00806       396 FVATALKTIITAV  408 (511)
T ss_pred             HHHHHHHHheEEE
Confidence            8877666665544

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PTZ00207 hypothetical protein; Provisional

Probab=99.96  E-value=4.8e-27  Score=225.40  Aligned_cols=430  Identities=12%  Similarity=0.053  Sum_probs=266.2

Q ss_pred             CchHHHHHHHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHH
Q 011416           20 GKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALV   99 (486)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~   99 (486)
                      +.+||..+.......... ...+.++...|.+++++|+|..+++++.++. ..+.+++++.|++.||+|+|+++.++.++
T Consensus        23 e~~Rw~~lva~~~~~~~~-g~~y~fsv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll  100 (591)
T PTZ00207         23 EPRRFALLVLGAFCSICT-SFMYAFNLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTV  100 (591)
T ss_pred             ccchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            355666655554444333 4455677888999999999999999998874 44566788999999999999999999999


Q ss_pred             HHHhhhhhhcC------CCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHH-HHHHHHH
Q 011416          100 TAGAGLLSSFS------PNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSE-AIGAWII  171 (486)
Q Consensus       100 ~~~~~~~~~~a------~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~-~~l~~~l  171 (486)
                      +++++++++++      ++++.+++.|++.|+|.+.. +.....+.+|+| ++||++.|+...+.++|.++. ++..+++
T Consensus       101 ~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~  179 (591)
T PTZ00207        101 FCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFF  179 (591)
T ss_pred             HHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999987      68999999999999999877 666778889985 789999999999999999864 4444444


Q ss_pred             hcCCCcHHHHHHhHHHHHHHHHH-hhcc--CCCchhhhhcCChHHHHHHHHHHHHh------------------------
Q 011416          172 MPRLDWRWLLGLSSIPSFILLAF-LGFQ--PESPRYLCLKGRTAEAHRALEKIAQV------------------------  224 (486)
Q Consensus       172 ~~~~~w~~~f~~~~~~~~~~~~~-~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~------------------------  224 (486)
                      .  .+|+..|++.+++.++..++ ..++  |+.+++...+++.+++++..++..+.                        
T Consensus       180 ~--~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~  257 (591)
T PTZ00207        180 S--DNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIV  257 (591)
T ss_pred             H--HhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHH
Confidence            3  47888888888877776443 3333  33333321222112221111100000                        


Q ss_pred             ------------c--------------------C-CCCCCchhhhcccc-CCC-CCCCCccchhhcccCCC---CCccc-
Q 011416          225 ------------N--------------------K-TKLPNGKLVARRST-LPT-GERAPPELVHLLSSNGG---NKTTE-  265 (486)
Q Consensus       225 ------------~--------------------~-~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~---~~~~~-  265 (486)
                                  +                    + -..+........+. +.+ +..+..+........+.   ....+ 
T Consensus       258 yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (591)
T PTZ00207        258 FLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDY  337 (591)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccC
Confidence                        0                    0 00000000000000 000 00000000000000000   00000 


Q ss_pred             C-CCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCC-CCch-hHHHHHHHHhhH
Q 011416          266 G-KSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHP-QDAN-LYIDEFITSLAE  342 (486)
Q Consensus       266 ~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~i~~  342 (486)
                      . .+...++.+.++   ...+|+++..+++.............++.+...          |. ...+ ...+.++.++.+
T Consensus       338 ~~P~~~~t~~q~l~---~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~----------g~~~~~~~~~~~vsL~si~~  404 (591)
T PTZ00207        338 IAPQFQETFIEGLK---TARLWCLLWSIFCCVGAHFVIIFNARFIYTALA----------GEAPDDALNTLLTVLNGVGS  404 (591)
T ss_pred             CCCCCcchHHHHHh---chhHHHHHHHHHHhhCchheeeecHHHHHHHhc----------CCCCCccceeeehhhhhHHH
Confidence            0 000113333332   244555555555544444444444444432210          33 2221 222678889999


Q ss_pred             HHHHHHHHHHHHHh---------chhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhhccccccc
Q 011416          343 IPGLLLAAILVDTA---------GRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPT  413 (486)
Q Consensus       343 ~~~~~~~g~l~dr~---------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (486)
                      .+|++..|.+....         .|-..+.+..+ +.++.+++....+...+.+..++.|++.|..++.....++|++. 
T Consensus       405 ~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-  482 (591)
T PTZ00207        405 AVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIALVTRTIFA-  482 (591)
T ss_pred             HhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-
Confidence            99999999988322         22223344444 55555555554333577888899999999999999999999999 


Q ss_pred             cchhhHhHHHHHHHHHHHHHH-HHHHHHHHHhhc-------------cchHHHHHHHHHHHHHHHHhccc
Q 011416          414 SVRSTGAGAANAMGRIGGMVC-PLVAVALVANCH-------------QMTAVVLLVVVIVTSILSVMLIP  469 (486)
Q Consensus       414 ~~~~~~~g~~~~~~~~g~~~~-~~i~g~l~~~~g-------------~~~~~~~~~~~~~~~~~~~~~~~  469 (486)
                      ++-|+-+-+.....-+|..+. -.+.|.++|+..             +..+|++++++++++.+....+.
T Consensus       483 k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~  552 (591)
T PTZ00207        483 KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVH  552 (591)
T ss_pred             cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhhee
Confidence            888888888888888888777 568888887632             45688888888888877765543

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.96  E-value=9.7e-27  Score=223.92  Aligned_cols=418  Identities=12%  Similarity=-0.039  Sum_probs=253.2

Q ss_pred             HHHHHHHHHHHHHHhhHhhhh-chhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhh-hcchHHHHHHHHHHHH
Q 011416           25 FVLAYAGLGWVAEAMEIMILS-FVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADN-YGRRMGFLGEALVTAG  102 (486)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~G~r~~~~~~~~~~~~  102 (486)
                      +.+..+++..+...+..+... .+...+.+++|++.++.+++.+.+.....+..+++|+++|| +|||+++.++.+++++
T Consensus        14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~   93 (489)
T PRK10207         14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAI   93 (489)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHH
Confidence            334444455555555544444 44456678899999999999999998888889999999999 9999999999999999


Q ss_pred             hhhhhhcCCCHHH-HHHHHHHHHhccCcc-hhhhhhhccccCCC--chhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcH
Q 011416          103 AGLLSSFSPNYIT-LITLRCLVGVGLGSG-HVFLSWFLEFVPPS--NRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWR  178 (486)
Q Consensus       103 ~~~~~~~a~~~~~-l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~  178 (486)
                      ++++++++++... ++++|+++|+|.|.. +...+++.|.+|++  +|++++++++.+.++|..+||.+++++.++.|||
T Consensus        94 g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~  173 (489)
T PRK10207         94 GYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYS  173 (489)
T ss_pred             HHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChH
Confidence            9999999877554 558999999999998 77889999999887  4578999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHHHHHHhhccCCCchhhh--hcCChHHHHHHHH----------HHHHhcCCCCCCchhhhccccCCCCCC
Q 011416          179 WLLGLSSIPSFILLAFLGFQPESPRYLC--LKGRTAEAHRALE----------KIAQVNKTKLPNGKLVARRSTLPTGER  246 (486)
Q Consensus       179 ~~f~~~~~~~~~~~~~~~~~~e~~~~~~--~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (486)
                      +.|++.++..++.++.+...++..+...  .++++.+......          ....................       
T Consensus       174 ~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  246 (489)
T PRK10207        174 VTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLS-------  246 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-------
Confidence            9999865533333333333332211100  0011111111000          00000000000000000000       


Q ss_pred             CCccchhhcccCCCCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCC
Q 011416          247 APPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHP  326 (486)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (486)
                        .........    ++.+.       ++.+|++...... +++........+.......+.+.+...     .....|.
T Consensus       247 --~i~~~~f~~----~~~~~-------~~~~r~r~~~~~~-l~~~~~~f~~~~~q~~~~l~l~~~~~~-----~~~~~G~  307 (489)
T PRK10207        247 --IVVTIIFFR----EAFKL-------DKTGRNKMFVAFV-LMLEAVVFYILYAQMPTSLNFFAINNV-----HHEILGF  307 (489)
T ss_pred             --HHHHHHHHH----HHhcC-------CHHHHHHHHHHHH-HHHHHHHHHHHHHHcccHHHHHHHHhc-----cccccce
Confidence              000000000    00000       0122222211111 111111111222222122222211000     0011122


Q ss_pred             CCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhH-------HHHHHHHHHHHHHHHHh-----h-----hchhHHHHHHH
Q 011416          327 QDANLYIDEFITSLAEIPGLLLAAILVDTAGRKL-------SITIMFTLSCLFLLPLV-----T-----YQSNILTTGLL  389 (486)
Q Consensus       327 ~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~-------~~~~~~~~~~~~~~~~~-----~-----~~~~~~~~~~~  389 (486)
                      . ...........+..++..++.+++.||+++|+       .+.+++++.+++++.+.     .     ..+.+......
T Consensus       308 ~-i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~  386 (489)
T PRK10207        308 S-INPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVY  386 (489)
T ss_pred             E-ECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHH
Confidence            2 12334444555666677888899999999886       36667777666654321     1     12355666778


Q ss_pred             HHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHH----------hhccchHHHHHHHHHH
Q 011416          390 FGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVA----------NCHQMTAVVLLVVVIV  459 (486)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~----------~~g~~~~~~~~~~~~~  459 (486)
                      ++.+++.....+...+.+.+..|++.+|.++|+.+...++|+.++..+......          ...+...|...+...+
T Consensus       387 ~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~  466 (489)
T PRK10207        387 LFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTL  466 (489)
T ss_pred             HHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHH
Confidence            889999999999999999999999999999999999999999999888764421          1113445556666666


Q ss_pred             HHHHHHhccc
Q 011416          460 TSILSVMLIP  469 (486)
Q Consensus       460 ~~~~~~~~~~  469 (486)
                      ++.++.+...
T Consensus       467 ~~~v~~~~~~  476 (489)
T PRK10207        467 GVAVVMALMV  476 (489)
T ss_pred             HHHHHHHHHH
Confidence            6665555544

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.96  E-value=1.1e-26  Score=201.50  Aligned_cols=369  Identities=18%  Similarity=0.146  Sum_probs=284.9

Q ss_pred             HHHHHHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHh
Q 011416           24 CFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGA  103 (486)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~  103 (486)
                      +..+..+.+..+.---....++|+++++.+|+|+|.+..|++.++..+...+.+++..+++.|+|.++.+..++++.+++
T Consensus        11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G   90 (395)
T COG2807          11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAG   90 (395)
T ss_pred             hHHHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHH
Confidence            44444444444444456677889999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcCCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CcHHHH
Q 011416          104 GLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRL-DWRWLL  181 (486)
Q Consensus       104 ~~~~~~a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~-~w~~~f  181 (486)
                      .++-... +.+.++.+-.+.|.|.+.. ......+-+.+| |+-+..+|++....++|..+++.+...+.++. +||...
T Consensus        91 ~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL  168 (395)
T COG2807          91 ILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGAL  168 (395)
T ss_pred             HHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHH
Confidence            9999887 7888999999999999988 555677878885 67899999999999999999999999998877 799999


Q ss_pred             HHhHHHHHHHHHHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCCC
Q 011416          182 GLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGN  261 (486)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (486)
                      .+.++++++.++.|+.-...++      ......                                              
T Consensus       169 ~~WAl~allAl~~WlPq~~r~~------~~~~~~----------------------------------------------  196 (395)
T COG2807         169 GFWALLALLALLIWLPQALREQ------AASIAT----------------------------------------------  196 (395)
T ss_pred             HHHHHHHHHHHHHHhhhccccc------cccccc----------------------------------------------
Confidence            9999999888776643211100      000000                                              


Q ss_pred             CcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhh
Q 011416          262 KTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLA  341 (486)
Q Consensus       262 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  341 (486)
                             +..+-..+++++.   .+.+.+.+..++..+|....|.|.+.           .+.|+|+.+++...+...+.
T Consensus       197 -------~~~~~~~vw~~~~---aW~vtLfmGlqS~~~Y~~~~WLP~il-----------i~~G~sa~~aG~llsl~~l~  255 (395)
T COG2807         197 -------KLVSVRKVWRSPL---AWQVTLFMGLQSLLYYIVIGWLPAIL-----------IDRGLSAAEAGSLLSLMQLA  255 (395)
T ss_pred             -------ccccccccccCch---hHHHHHHHHhhHHHHHHHHHHHHHHH-----------HHcCCCHHHhhhHHHHHHHH
Confidence                   0001122334432   34455556678899999999999876           56789999999999999999


Q ss_pred             HHHHHHHHHHHHHHh-chhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhhccccccc-cchhhH
Q 011416          342 EIPGLLLAAILVDTA-GRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPT-SVRSTG  419 (486)
Q Consensus       342 ~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  419 (486)
                      +++..+....+.+|. ++|+.......++.++.+.+.+.+....... .++.|++.++.++.....+.+..+. +..+.-
T Consensus       256 ~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~L  334 (395)
T COG2807         256 QLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAAL  334 (395)
T ss_pred             HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHH
Confidence            999999999999975 4667777777777777777765333222222 5788999999999998888877644 556788


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhccchH-HHHHHHHHHHHHHHHhcc
Q 011416          420 AGAANAMGRIGGMVCPLVAVALVANCHQMTA-VVLLVVVIVTSILSVMLI  468 (486)
Q Consensus       420 ~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~-~~~~~~~~~~~~~~~~~~  468 (486)
                      .|+.+.++++-..+||.++|.+.|..|.+.. ...+....++..+.-+..
T Consensus       335 SgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~a  384 (395)
T COG2807         335 SGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGLRA  384 (395)
T ss_pred             HHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHhhc
Confidence            8999999999999999999999999885544 444444444444444444

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=3.4e-29  Score=218.73  Aligned_cols=345  Identities=17%  Similarity=0.069  Sum_probs=252.9

Q ss_pred             hhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHhccCcc-h
Q 011416           53 SEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-H  131 (486)
Q Consensus        53 ~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~-~  131 (486)
                      ++.+-+++++|++.+.+.+.+.+.+|+.|.+.||+|+|..+++|++++.++++++++.++|++++++|.+||+|.+.. .
T Consensus        99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~t  178 (464)
T KOG3764|consen   99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADT  178 (464)
T ss_pred             cCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHh
Confidence            445667889999999999999999999999999999999999999999999999999999999999999999999998 7


Q ss_pred             hhhhhhccccCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHhHHHHHHHHHHhhccCCCchhhhhcCC
Q 011416          132 VFLSWFLEFVPPS-NRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGR  210 (486)
Q Consensus       132 ~~~~~i~~~~~~~-~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~  210 (486)
                      ...+++++.+|++ +|++++|+...+.++|..+||++|+.+.+..|.+.+|++.+++.++-..+.+++-|..+.     +
T Consensus       179 sglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~-----~  253 (464)
T KOG3764|consen  179 SGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEM-----D  253 (464)
T ss_pred             hhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCcccc-----C
Confidence            8889999988775 579999999999999999999999999999999999999999999876665554332110     0


Q ss_pred             hHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCCCCcccCCCchhhhHhhhchhhHHHHHHHHH
Q 011416          211 TAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWL  290 (486)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  290 (486)
                      +++.                                                     .+..+++.++++++      +..
T Consensus       254 ~~~~-----------------------------------------------------~~~~~~~~Ll~dP~------I~~  274 (464)
T KOG3764|consen  254 PDST-----------------------------------------------------EQGTPMWSLLMDPY------ILL  274 (464)
T ss_pred             cccc-----------------------------------------------------ccCccHHHHHhCch------Hhh
Confidence            0000                                                     00013444444443      122


Q ss_pred             HHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhc--hhHHHHHHHHH
Q 011416          291 LLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAG--RKLSITIMFTL  368 (486)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g--~~~~~~~~~~~  368 (486)
                      ..+...++.....+..|.+....       .+....+..+.++.+...++...++..+.|.+.||++  |......+.+.
T Consensus       275 ~agai~~~n~~lafLePtlslwm-------~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~  347 (464)
T KOG3764|consen  275 IAGAITFSNSSLAFLEPTLSLWM-------LETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLAT  347 (464)
T ss_pred             hhcchhhccchHHHhCcccHHHH-------HHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHH
Confidence            22222233333344444333111       1223334447888899999999999999999999999  54444555555


Q ss_pred             HHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhh---hHhhhcccccccc---chhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 011416          369 SCLFLLPLVTYQSNILTTGLLFGARMCVMGAFT---VSLIYAAEIYPTS---VRSTGAGAANAMGRIGGMVCPLVAVALV  442 (486)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~---~~~~~~g~~~~~~~~g~~~~~~i~g~l~  442 (486)
                      .+++.....+.++...+++..+..+++.+....   ....+..|.-..+   .-|..+++......+|.++||.+.|.++
T Consensus       348 ~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv  427 (464)
T KOG3764|consen  348 VGVSSGPIPFATSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLV  427 (464)
T ss_pred             HHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchhe
Confidence            555555555666555555444444444433333   2333333333233   5688999999999999999999999999


Q ss_pred             HhhccchHHHHHHHHHHHHHHHHhcc
Q 011416          443 ANCHQMTAVVLLVVVIVTSILSVMLI  468 (486)
Q Consensus       443 ~~~g~~~~~~~~~~~~~~~~~~~~~~  468 (486)
                      +..|+.+...+.+...++..-+..++
T Consensus       428 ~~iGF~wl~~iig~~n~iyapvl~ll  453 (464)
T KOG3764|consen  428 EAIGFEWLMTIIGILNLIYAPVLLLL  453 (464)
T ss_pred             eehhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999988888888887776555544

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.96  E-value=6.3e-27  Score=225.78  Aligned_cols=335  Identities=13%  Similarity=0.031  Sum_probs=237.7

Q ss_pred             chhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhh----hcch-HHHHHHHHHHHHhhhhhhcCCC------HH
Q 011416           46 FVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADN----YGRR-MGFLGEALVTAGAGLLSSFSPN------YI  114 (486)
Q Consensus        46 ~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr----~G~r-~~~~~~~~~~~~~~~~~~~a~~------~~  114 (486)
                      ...+.+.+++|+++.++|++.++..+..++..|+.|+++||    +||| +.++.+....+++.+++.+.++      ..
T Consensus        21 ~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~  100 (437)
T TIGR00792        21 YLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLV  100 (437)
T ss_pred             HHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHH
Confidence            35566788899999999999999999999999999999997    6774 4677788888888888777664      45


Q ss_pred             HHHHHHHHHHhccCcc-hhhhhhhcccc-CCCchhHHHHHHHHHHHHHHHHHHHHHHHHh-------cCCCcHHHHHHhH
Q 011416          115 TLITLRCLVGVGLGSG-HVFLSWFLEFV-PPSNRGMWMVIFSSFWTIGSVSEAIGAWIIM-------PRLDWRWLLGLSS  185 (486)
Q Consensus       115 ~l~~~r~l~G~~~~~~-~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~-------~~~~w~~~f~~~~  185 (486)
                      .+++.+++.+++.+.. .+..++..|.. +++||++..++.+.+..+|..+++.+.+.+.       +..+||..+.+.+
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~  180 (437)
T TIGR00792       101 YAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLA  180 (437)
T ss_pred             HHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHH
Confidence            6677888888888877 56667888877 5689999999999999998888777665554       2468999999988


Q ss_pred             HHHHHHHHH-hhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCCCCcc
Q 011416          186 IPSFILLAF-LGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTT  264 (486)
Q Consensus       186 ~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (486)
                      +++++..+. .+..+|+++..   ++.++                                                   
T Consensus       181 ~l~~~~~~~~~~~~~e~~~~~---~~~~~---------------------------------------------------  206 (437)
T TIGR00792       181 LIGVVSLIICFFGTKERYSEI---PKNIE---------------------------------------------------  206 (437)
T ss_pred             HHHHHHHHHHHcCCEecCCCC---Ccccc---------------------------------------------------
Confidence            887776444 45556543110   00000                                                   


Q ss_pred             cCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHH
Q 011416          265 EGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIP  344 (486)
Q Consensus       265 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  344 (486)
                      ++.+....++.+++++..+....   ..+.....++....+.+.+.+          ...+ ++...+.......++.++
T Consensus       207 ~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~----------~~~~-~~~~~~~~~~~~~i~~ii  272 (437)
T TIGR00792       207 KKLSLKQIFKALFKNDQLLILCL---AYLFYNLAFNIKNGVQVYYFT----------YVLG-DPELFSYMGSIAIVAGLI  272 (437)
T ss_pred             cCCCHHHHHHHHhCCHHHHHHHH---HHHHHHHHHHHHcchhheeEe----------eecC-ChHHHHHHHHHHHHHHHH
Confidence            00000114455555554333222   222222223322222332221          1122 344556666777899999


Q ss_pred             HHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhh-chhHHHHHHHHHHHHhhhhhhhhHhhhcccccc-------ccch
Q 011416          345 GLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY-QSNILTTGLLFGARMCVMGAFTVSLIYAAEIYP-------TSVR  416 (486)
Q Consensus       345 ~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~  416 (486)
                      +.++.+++.||+|+|+.+..+..+.+++.+.+.+. ++.+...+..++.+++.+...+..+++.+|..+       ++.+
T Consensus       273 ~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (437)
T TIGR00792       273 GVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAE  352 (437)
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccch
Confidence            99999999999999999988888877777666553 344455556667778888888888888888764       5567


Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 011416          417 STGAGAANAMGRIGGMVCPLVAVALVANCHQM  448 (486)
Q Consensus       417 ~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~  448 (486)
                      |.++|+.+....+|..+++.+.|.+.+..|+.
T Consensus       353 G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~  384 (437)
T TIGR00792       353 GLVYSVRTFVRKLGQALAGFLVGLILGIIGYV  384 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999999987753

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.96  E-value=4.9e-26  Score=215.70  Aligned_cols=367  Identities=12%  Similarity=-0.035  Sum_probs=248.8

Q ss_pred             HHHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHH--HHHHHHHHHHHHHHHhh-hhhhhcchHHHHHHHHH-HHH
Q 011416           27 LAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLI--TTSVFAGLVVGAYAWGL-VADNYGRRMGFLGEALV-TAG  102 (486)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~--~s~~~~~~~i~~~~~g~-l~dr~G~r~~~~~~~~~-~~~  102 (486)
                      +..++..++.++.......+.+|.+.+|.|.|.+++|++  .++..+...+.+|+++. ..||+||||..++.+.+ .++
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~   82 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSA   82 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHH
Confidence            455667789999999999999999999999999999997  46778888888998855 79999999887555433 222


Q ss_pred             hhhhhh---cCCC-HHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 011416          103 AGLLSS---FSPN-YITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDW  177 (486)
Q Consensus       103 ~~~~~~---~a~~-~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w  177 (486)
                      .....+   ...+ ...++..-++.++..+.. +...++..|..++++++...+....+..+|.++|+...+.+.+..||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw  162 (390)
T TIGR02718        83 CLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQ  162 (390)
T ss_pred             HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence            222222   2323 333444445555555555 56667788888888889889999999899999999999999999999


Q ss_pred             HHHHHHhHHHHHHHHHHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhccc
Q 011416          178 RWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSS  257 (486)
Q Consensus       178 ~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (486)
                      |..|++.+++.++..+..++++|+++..  ++++++.                                           
T Consensus       163 ~~~f~~~a~l~~~~~~~~~~~~~~~~~~--~~~~~~~-------------------------------------------  197 (390)
T TIGR02718       163 RPAFLLVACVPLASLVCVLWLKDRAVAS--PEAPLAR-------------------------------------------  197 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCcCc--cccchhh-------------------------------------------
Confidence            9999999988777655545554432110  0000000                                           


Q ss_pred             CCCCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHH
Q 011416          258 NGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFI  337 (486)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (486)
                                  ..+.++++|++..+......++........+   .+.+.+.           .+.|.++.+.+.....
T Consensus       198 ------------~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~l-----------~~~G~s~~~ig~~~~~  251 (390)
T TIGR02718       198 ------------RASLFRFFRRPLAWSLLALALLSAMTAVSGF---GLSKLYL-----------VDAGWPLEWIGRLGMA  251 (390)
T ss_pred             ------------HHHHHHHHcCcCHHHHHHHHHHHHHHHHHHH---HHhhHHH-----------HhcCCCHHHHHHHHhH
Confidence                        0033444555443433333333322222222   2223222           3458999999998877


Q ss_pred             HHh-hHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhh------hchhHHHHHHHHHHHHhhhhhhhhHhhhcccc
Q 011416          338 TSL-AEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT------YQSNILTTGLLFGARMCVMGAFTVSLIYAAEI  410 (486)
Q Consensus       338 ~~i-~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (486)
                      .++ ..+++.++.|++.||+|+|+.+..+..+.++..+....      ..+.........+.++..+...+...+...+.
T Consensus       252 ~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  331 (390)
T TIGR02718       252 GGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRF  331 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            764 56677899999999999999888776655333222221      11222223333344455566667777776677


Q ss_pred             ccc-cchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Q 011416          411 YPT-SVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILS  464 (486)
Q Consensus       411 ~~~-~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~  464 (486)
                      .++ +.+++.+++.+...++|..++|.+.|.++|..|+...|...+++.+++...
T Consensus       332 ~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~  386 (390)
T TIGR02718       332 AGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAILL  386 (390)
T ss_pred             hCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence            665 789999999999999999999999999999999888888777766665444

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.96  E-value=2e-27  Score=234.88  Aligned_cols=372  Identities=12%  Similarity=0.080  Sum_probs=258.8

Q ss_pred             HHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhh
Q 011416           28 AYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLS  107 (486)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~  107 (486)
                      +..++..+.........+..++.++++|+++..+.|++.+.+.+++.++.++.|+++||+|||+++.++.++++++++++
T Consensus        36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~  115 (633)
T TIGR00805        36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLL  115 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHH
Confidence            44445677777888899999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             hcCC---------------------------------------------------CHHHHHHHHHHHHhccCcc-hhhhh
Q 011416          108 SFSP---------------------------------------------------NYITLITLRCLVGVGLGSG-HVFLS  135 (486)
Q Consensus       108 ~~a~---------------------------------------------------~~~~l~~~r~l~G~~~~~~-~~~~~  135 (486)
                      ++.+                                                   .+..++++|+++|+|.+.. +...+
T Consensus       116 alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~  195 (633)
T TIGR00805       116 SLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGIS  195 (633)
T ss_pred             hChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCch
Confidence            7753                                                   2556789999999999998 78889


Q ss_pred             hhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCC----------------------CcHHHHHHhHHHHHHHHH
Q 011416          136 WFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRL----------------------DWRWLLGLSSIPSFILLA  193 (486)
Q Consensus       136 ~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~----------------------~w~~~f~~~~~~~~~~~~  193 (486)
                      ++.|++|+++|+++++++..+..+|.++|+++++.+.+.+                      +|+..|++.+++.++..+
T Consensus       196 ~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v  275 (633)
T TIGR00805       196 YIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSI  275 (633)
T ss_pred             hhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999887532                      277788888888877666


Q ss_pred             HhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCCCCcccCCCchhhh
Q 011416          194 FLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLF  273 (486)
Q Consensus       194 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (486)
                      .++++|++.+....+.+.+..++.     ..+.                .+.+.+           .......+.....+
T Consensus       276 ~l~~~p~~lp~~~~~~~~~~~~~~-----~~~~----------------~~~~~~-----------~~~~~~~~~~~~~~  323 (633)
T TIGR00805       276 PFFFFPKALPKEGKRVNVDVHETE-----KLEK----------------SEDKSR-----------KKNSDITKDFPKII  323 (633)
T ss_pred             HHHhCccccCCcccccchhhhhhh-----cccc----------------cccccc-----------hhhhhhHHHHHHHH
Confidence            666677653211000000000000     0000                000000           00000001112245


Q ss_pred             HhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHh-hHHHHHHHHHHH
Q 011416          274 LMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSL-AEIPGLLLAAIL  352 (486)
Q Consensus       274 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~g~l  352 (486)
                      +.+++++.   ++...+..+.....+++...+.|.+.+          ..++.++.++++......+ +.+++.+++|++
T Consensus       324 ~~Ll~n~~---f~~~~l~~~~~~~~~~~~~~~lP~yl~----------~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l  390 (633)
T TIGR00805       324 KRLLCNPI---YMLVILAQVIDSLAFNGYITFLPKYLE----------NQYGISSAEANFLIGVVNLPAAGLGYLIGGFI  390 (633)
T ss_pred             HHHHcCcH---HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHcCCcHHHHHHHhhhhhhhHHHHHHhhhhhe
Confidence            55666543   333444444455566666667776652          3458899999988877766 568999999999


Q ss_pred             HHHhc--hhHHHHHHHHHHHHHHHHHh------------------------------h-------hc-------------
Q 011416          353 VDTAG--RKLSITIMFTLSCLFLLPLV------------------------------T-------YQ-------------  380 (486)
Q Consensus       353 ~dr~g--~~~~~~~~~~~~~~~~~~~~------------------------------~-------~~-------------  380 (486)
                      +||++  .|+.+..+.++..+..+...                              .       ..             
T Consensus       391 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~agv~~~y~~~~~~~~~~~~Cn~~C~C~~~~~~PVCg~~~~t  470 (633)
T TIGR00805       391 MKKFKLNVKKAAYFAICLSTLSYLLCSPLFLIGCESAPVAGVNNPSTDQSIYVENPTDCNRQCSCDSSFFDPVCGDNGLA  470 (633)
T ss_pred             eeeecccHHHHHHHHHHHHHHHHHHHHHHHeecCCCCccceeeccCCCcccCCCChhccCCCCCCCCCCcccccCCCCCE
Confidence            99987  45666555555555433311                              0       00             


Q ss_pred             ---------------------------------------------h-hHHHHHHHHHHHHhhhhhhhhHhhhcccccccc
Q 011416          381 ---------------------------------------------S-NILTTGLLFGARMCVMGAFTVSLIYAAEIYPTS  414 (486)
Q Consensus       381 ---------------------------------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (486)
                                                                   . ...+++..++..+..+..........-+.+|++
T Consensus       471 Y~SpC~AGC~~~~~~~~~~~y~~CsCi~~~~~~~a~~g~C~~~C~~~~~~f~~~~~~~~~~~~~~~~p~~~i~lR~V~~~  550 (633)
T TIGR00805       471 YLSPCHAGCSMSVGTGSNMVYTNCSCVQTPGNSSAKKGLCNPPCATSLLYFLILFIPLSFIAFITAVPLYMVLLRVVNPE  550 (633)
T ss_pred             EECccccCCCCccCCCCcceecccccccCCCCCCCcCCCCCcccchhHHHHHHHHHHHHHHHHhccCchheEEeeccCcc
Confidence                                                         0 011112222222333333445666778889999


Q ss_pred             chhhHhHHHHHHHH-HHHHHHHHHHHHHHHh
Q 011416          415 VRSTGAGAANAMGR-IGGMVCPLVAVALVAN  444 (486)
Q Consensus       415 ~~~~~~g~~~~~~~-~g~~~~~~i~g~l~~~  444 (486)
                      +|+.+.|+...+.. +|.+.+|+++|++.|.
T Consensus       551 ~rs~alg~~~~~~rllg~iP~pi~fG~~iD~  581 (633)
T TIGR00805       551 EKSLAIGLQWLCMRVFATIPAPILFGLLIDV  581 (633)
T ss_pred             cchHHhhHHHHHHHHhcCCChhHHHhhhhhc
Confidence            99999999987765 7889999999999985

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.96  E-value=1.6e-25  Score=213.29  Aligned_cols=388  Identities=19%  Similarity=0.183  Sum_probs=253.8

Q ss_pred             HHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcC
Q 011416           31 GLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFS  110 (486)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a  110 (486)
                      ++.....++.....+..++.+..|+|- .....|+.+.+.++..++.++.|+++|.||||++++.+.++..+|+++++.+
T Consensus        50 ~~~~~~~~~~~~~~a~~l~~I~~diG~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA  128 (599)
T PF06609_consen   50 SLAVIAAYFVLVLPASILPYINADIGG-SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA  128 (599)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC
Confidence            333344455556667778899999985 4788999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhccCcchhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHhHHHHHH
Q 011416          111 PNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFI  190 (486)
Q Consensus       111 ~~~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~f~~~~~~~~~  190 (486)
                      +|...++++..+.|+|.|........++|..|.|.|+...++.....-....+++.++..+..+.+|||.|++.++...+
T Consensus       129 ~~~~~~iag~~l~GvgaG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i  208 (599)
T PF06609_consen  129 QNMNTFIAGMVLYGVGAGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGI  208 (599)
T ss_pred             CcHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHH
Confidence            99999999999999998777555566889999999998887777666566667788887777778999999999887666


Q ss_pred             HHHHhhccCCCchhhhhcCChHHHHHHHHHHHH----------------hcCCCCCCchhhhccccCCCCCCCCccchhh
Q 011416          191 LLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQ----------------VNKTKLPNGKLVARRSTLPTGERAPPELVHL  254 (486)
Q Consensus       191 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (486)
                      .++..+++-.+|++.+.++++...++.++++.-                .+-...+.          .+....+. ....
T Consensus       209 ~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~----------~~W~Sa~V-Ia~l  277 (599)
T PF06609_consen  209 ALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPY----------YPWKSAHV-IAPL  277 (599)
T ss_pred             HHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCC----------CCCCCccc-hhhH
Confidence            544322222222222222221111222222210                00000000          00000000 0000


Q ss_pred             cc------cCCCCCccc-CCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCC
Q 011416          255 LS------SNGGNKTTE-GKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQ  327 (486)
Q Consensus       255 ~~------~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (486)
                      ..      -..-.|... .+.+..+.+ +++++  |.+....+..+.....+|....+.|.....          .++.+
T Consensus       278 viG~~~Lv~F~~wE~~~~~~~Pl~P~~-Lf~~~--r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~----------vf~~d  344 (599)
T PF06609_consen  278 VIGFVLLVAFVVWEWFGAPKDPLFPHR-LFKDR--RGFAALLVISFISGMNFFSVNILWPQQVVN----------VFGSD  344 (599)
T ss_pred             HHHHHHHHHHHHhhhhccCCCCcCCHH-Hhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------hccCC
Confidence            00      000011111 112222333 44332  233333444444555566665555543311          11222


Q ss_pred             C---chhHHHHHHHHhhHHHHHHHHHHHHHHhchhHH-HHHHHHHHHHHHHHHhh--hchhHHHHHHHHHHHHhhhhhhh
Q 011416          328 D---ANLYIDEFITSLAEIPGLLLAAILVDTAGRKLS-ITIMFTLSCLFLLPLVT--YQSNILTTGLLFGARMCVMGAFT  401 (486)
Q Consensus       328 ~---~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  401 (486)
                      +   ...++.....+++..+|.++.|.+..+++|-|. ++++..++.+++..+..  .++....+...++.+++.+....
T Consensus       345 ~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~  424 (599)
T PF06609_consen  345 PISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILV  424 (599)
T ss_pred             CcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHH
Confidence            2   346677778888888999999999998887544 45666666555444443  33444556777788888888888


Q ss_pred             hHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 011416          402 VSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVA  443 (486)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~  443 (486)
                      .......-..|++.-|++.|+..++..+|+.++..+...+..
T Consensus       425 ~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~  466 (599)
T PF06609_consen  425 PAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFT  466 (599)
T ss_pred             HHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            888888888999999999999999999999999988866654

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.95  E-value=1.8e-25  Score=216.44  Aligned_cols=411  Identities=11%  Similarity=-0.029  Sum_probs=240.6

Q ss_pred             HHHHHHHHHhhHhhhhchh-chhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhh-hcchHHHHHHHHHHHHhhhhh
Q 011416           30 AGLGWVAEAMEIMILSFVG-PTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADN-YGRRMGFLGEALVTAGAGLLS  107 (486)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~G~r~~~~~~~~~~~~~~~~~  107 (486)
                      +++..+...+..+.+...+ ..+.+++|++.++.+++.+.+........+++|+++|| +|||+++..+.++.+++..++
T Consensus        26 ~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~  105 (500)
T PRK09584         26 IFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALV  105 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence            3344444544444444444 44568899999999999988877767777899999999 599999999999999999999


Q ss_pred             hcCC-CHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Q 011416          108 SFSP-NYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSN--RGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGL  183 (486)
Q Consensus       108 ~~a~-~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~f~~  183 (486)
                      ++++ +.+.+.+.|+++|++.|.. +...+++.|++|+++  |..++++++.+.++|..++|.+++++.+..|||+.|.+
T Consensus       106 ~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i  185 (500)
T PRK09584        106 AWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFAL  185 (500)
T ss_pred             HHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHH
Confidence            8874 5667778899999999988 777789999998654  45678999999999999999999999999999999998


Q ss_pred             hHHHHHHHHHH----hhccCCCchhhhhcCChHHHHHHHH--------HHHHhcCCCCCCchhhhccccCCCCCCCCccc
Q 011416          184 SSIPSFILLAF----LGFQPESPRYLCLKGRTAEAHRALE--------KIAQVNKTKLPNGKLVARRSTLPTGERAPPEL  251 (486)
Q Consensus       184 ~~~~~~~~~~~----~~~~~e~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (486)
                      .++..++.++.    ...++|.++.. .+++.+.......        -........ +  +..... .         ..
T Consensus       186 ~~i~~~i~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~-~---------~~  251 (500)
T PRK09584        186 SVVGMLITVVNFAFCQRWVKQYGSKP-DFEPINYRKLLLTIVGVVALIAIATWLLHN-Q--EIARMA-L---------GV  251 (500)
T ss_pred             HHHHHHHHHHHHHHhHHHhccCCCCC-CccccchhhHHHHHHHHHHHHHHHHHHHhc-c--hHHHHH-H---------HH
Confidence            77644443322    22233321100 0000111000000        000000000 0  000000 0         00


Q ss_pred             hhhcccCCCCCcccCCCchhhhHh--hhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCc
Q 011416          252 VHLLSSNGGNKTTEGKSGLSLFLM--LFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDA  329 (486)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (486)
                      ......            ....++  ..++..+++.+.... .+.....+|......+.......... .-....|. ..
T Consensus       252 ~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~f~~~~~q~~~~l~~~~~~~-~~~~~~g~-~i  316 (500)
T PRK09584        252 VALGIV------------VIFGKEAFAMKGAARRKMIVAFI-LMLEAIIFFVLYSQMPTSLNFFAIRN-VEHSILGI-AV  316 (500)
T ss_pred             HHHHHH------------HHHHHHHhhcCHHHHHHHHHHHH-HHHHHHHHHHHHHHhccHHHHHHHHh-ccccccce-EE
Confidence            000000            000000  001111122222221 12222333333332222211000000 00000111 12


Q ss_pred             hhHHHHHHHHhhHHHHHHHHHHHHH----HhchhHHHHHHHHHHHHHHHHHhhhch---------hHHHHHHHHHHHHhh
Q 011416          330 NLYIDEFITSLAEIPGLLLAAILVD----TAGRKLSITIMFTLSCLFLLPLVTYQS---------NILTTGLLFGARMCV  396 (486)
Q Consensus       330 ~~~~~~~~~~i~~~~~~~~~g~l~d----r~g~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~  396 (486)
                      ..+.......+..++..++.+++-+    |.+..+.+.+++++.+++++.+.....         .++.....++.+++.
T Consensus       317 ~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge  396 (500)
T PRK09584        317 EPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGE  396 (500)
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHH
Confidence            2445556666666666666644444    445557788889999998888765332         346777788889999


Q ss_pred             hhhhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHH----------hhccchHHHHHHHHHHHHHHHHh
Q 011416          397 MGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVA----------NCHQMTAVVLLVVVIVTSILSVM  466 (486)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~----------~~g~~~~~~~~~~~~~~~~~~~~  466 (486)
                      ....|...+++.+..|++.||+++|+......+|..++..+.+....          ..++...|...++..++.+++.+
T Consensus       397 ~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~  476 (500)
T PRK09584        397 LMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLML  476 (500)
T ss_pred             HHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999997776666666666555542210          11244566666666555554444


Q ss_pred             ccc
Q 011416          467 LIP  469 (486)
Q Consensus       467 ~~~  469 (486)
                      ...
T Consensus       477 ~~~  479 (500)
T PRK09584        477 LTA  479 (500)
T ss_pred             HHH
Confidence            443

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.94  E-value=2.1e-23  Score=196.48  Aligned_cols=394  Identities=14%  Similarity=0.035  Sum_probs=258.3

Q ss_pred             HHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhcchHHHHHH-HHHHHHhhhhh
Q 011416           33 GWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVAD----NYGRRMGFLGE-ALVTAGAGLLS  107 (486)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d----r~G~r~~~~~~-~~~~~~~~~~~  107 (486)
                      ..+-..+......+..+.+.+++|.+..+.+++..+..+...+.+|+.|.++|    |+||||.++++ ....+++.++.
T Consensus        12 ~~~Giq~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll   91 (477)
T TIGR01301        12 VAAGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILI   91 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence            33444555666667777788999999999999999999999999999999999    59999998874 66677777788


Q ss_pred             hcCCCHHH-----------------HHHHHHHHHhccCcc-hhhhhhhccccCCCch--hHHHHHHHHHHHHHHHHHHHH
Q 011416          108 SFSPNYIT-----------------LITLRCLVGVGLGSG-HVFLSWFLEFVPPSNR--GMWMVIFSSFWTIGSVSEAIG  167 (486)
Q Consensus       108 ~~a~~~~~-----------------l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~i~~~l  167 (486)
                      +++++.+.                 ++++-.+..++.... .+..+++.|.+|+++|  +.+.++.+.+.++|.++|+.+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~  171 (477)
T TIGR01301        92 GFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAA  171 (477)
T ss_pred             HhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88776532                 222333344466655 6677899999998865  689999999999999999999


Q ss_pred             HHHH--hcCC-------------CcHHHHHHhHHHHHHH-HHHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCC
Q 011416          168 AWII--MPRL-------------DWRWLLGLSSIPSFIL-LAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPN  231 (486)
Q Consensus       168 ~~~l--~~~~-------------~w~~~f~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (486)
                      ++..  .+.+             +.|..|++.++..++. ++..+..+|.|....  ++.++  +.   .   +      
T Consensus       172 g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~--~~~~~--~~---~---~------  235 (477)
T TIGR01301       172 GAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGS--DDFIN--SE---A---A------  235 (477)
T ss_pred             HHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCcc--ccchh--hh---c---c------
Confidence            9875  2211             5788999888777765 445666788753110  00000  00   0   0      


Q ss_pred             chhhhccccCCCCCCCCccchhhcccCCCCCcccCCCc-hhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 011416          232 GKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSG-LSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELS  310 (486)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (486)
                                  +.                ++.+.... ..-++.+++-+  +.+..++...+..-+.++.+..|.+.+.
T Consensus       236 ------------~~----------------~~~~~~~~~~~i~~~~~~mP--~~m~~l~~vqffsW~a~f~~~~y~T~~v  285 (477)
T TIGR01301       236 ------------PP----------------SKHGEEAFFGELFGAFKYLP--RPVWILLLVTCLNWIAWFPFILFDTDWM  285 (477)
T ss_pred             ------------cc----------------cccchhhhHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence                        00                00000000 01222222211  2223333344433334444444433332


Q ss_pred             ccc-ccCCCCccccCCCCC--chhHHHHHHHHhhHHHHHHHHHHHHHHhch-hHHHHHHHHHHHHHHHHHhhhch-----
Q 011416          311 SLD-TRCRSPLMFSHHPQD--ANLYIDEFITSLAEIPGLLLAAILVDTAGR-KLSITIMFTLSCLFLLPLVTYQS-----  381 (486)
Q Consensus       311 ~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~-~~~~~~~~~~~~~~~~~~~~~~~-----  381 (486)
                      ... ...+..  +...++.  ....+.....++...+.+++..++.+|+|+ |....++.++.+++++...+..+     
T Consensus       286 g~~v~~~~~~--~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~  363 (477)
T TIGR01301       286 GREVYGGSVN--QGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNS  363 (477)
T ss_pred             HHHHcCCCCc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence            110 000000  0000000  012344455666667777888999999985 67778888888888777764221     


Q ss_pred             ----------------hHHHHHHHHHHHHhhhhhhhhHhhhccccccc--cchhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 011416          382 ----------------NILTTGLLFGARMCVMGAFTVSLIYAAEIYPT--SVRSTGAGAANAMGRIGGMVCPLVAVALVA  443 (486)
Q Consensus       382 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~  443 (486)
                                      .+...+...+.|+.....+.+.++++++..++  +..|..+|+.|.+..+.+.+.....|.+.+
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~  443 (477)
T TIGR01301       364 RYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQ  443 (477)
T ss_pred             ccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence                            25667778888999999999999999999984  456999999999999999999999998777


Q ss_pred             hhc--cchHHHHHHHHHHHHHHHHhcccccccC
Q 011416          444 NCH--QMTAVVLLVVVIVTSILSVMLIPFETKG  474 (486)
Q Consensus       444 ~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (486)
                      ..|  ...++.+.++..++++++.++..|+.+.
T Consensus       444 ~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~  476 (477)
T TIGR01301       444 LFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV  476 (477)
T ss_pred             HcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            666  3456667777888888888888776553

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.94  E-value=4.1e-23  Score=192.44  Aligned_cols=371  Identities=17%  Similarity=0.161  Sum_probs=251.7

Q ss_pred             HHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhc-chHHHHHHHHHHHHhhhhhhc
Q 011416           31 GLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYG-RRMGFLGEALVTAGAGLLSSF  109 (486)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G-~r~~~~~~~~~~~~~~~~~~~  109 (486)
                      ...+++.+.......|..+.+.++.|.|..|+|.+.++..+...++++++|.++||++ +|+++.+..++.++.......
T Consensus         8 s~~~f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~   87 (400)
T PF03825_consen    8 SLMYFLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAF   87 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            3445666667777788889999999999999999999999999999999999999986 578888888888887777788


Q ss_pred             CCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHH-HHHHhcCCC---cHHHHHHh
Q 011416          110 SPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIG-AWIIMPRLD---WRWLLGLS  184 (486)
Q Consensus       110 a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l-~~~l~~~~~---w~~~f~~~  184 (486)
                      .++++.+++..++..+..... +...++..+...  ++++-.|-.....++|.+++... +..+....+   ....+++.
T Consensus        88 ~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~  165 (400)
T PF03825_consen   88 SSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIA  165 (400)
T ss_pred             hccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHH
Confidence            889998888888888776655 555555555553  23334445555666666665433 222222222   33455666


Q ss_pred             HHHHHHHHHHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCCCCcc
Q 011416          185 SIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTT  264 (486)
Q Consensus       185 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (486)
                      +..+++.....+.+|+.|+....+++.++                                                   
T Consensus       166 ~~~~~ll~~~~l~lp~~~~~~~~~~~~~~---------------------------------------------------  194 (400)
T PF03825_consen  166 AILSLLLAGFALFLPKTPPKRSAKESVKK---------------------------------------------------  194 (400)
T ss_pred             HHHHHHHHHHHHhCCCCccccccCCCccc---------------------------------------------------
Confidence            66555555556667877621100000000                                                   


Q ss_pred             cCCCchhhhHhhhchhhHHHHHHHHHHHH-HHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHH
Q 011416          265 EGKSGLSLFLMLFSSKLARTTILLWLLLF-GNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEI  343 (486)
Q Consensus       265 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  343 (486)
                         ....+...++|++....+++...... .....+.....+..+..              +.+....+....+..++.+
T Consensus       195 ---~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~g--------------g~~~~~~g~~~~l~~~aEi  257 (400)
T PF03825_consen  195 ---LLGLDALKLLKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELG--------------GYSGSTIGILWALGVVAEI  257 (400)
T ss_pred             ---ccchHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--------------cchhhHHHHHHHHHHHHHH
Confidence               00002223444444344433333322 23333322233333221              2566777877888889999


Q ss_pred             HHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhh-chhHHHHHHH----HHHHHhhhhhhhhHhhhccccccccchhh
Q 011416          344 PGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY-QSNILTTGLL----FGARMCVMGAFTVSLIYAAEIYPTSVRST  418 (486)
Q Consensus       344 ~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (486)
                      +.-...+++.+|+|.++++.++.+..++=..++... ++.+......    .+.|...+..+.....++.+..|++.|++
T Consensus       258 ~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at  337 (400)
T PF03825_consen  258 PFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRAT  337 (400)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHH
Confidence            999999999999999999999999999988888775 4444433333    35788888899999999999999999999


Q ss_pred             HhHHHHHHH-HHHHHHHHHHHHHHHHhhccch------HHHHHHHHHHHHHHHHhccccc
Q 011416          419 GAGAANAMG-RIGGMVCPLVAVALVANCHQMT------AVVLLVVVIVTSILSVMLIPFE  471 (486)
Q Consensus       419 ~~g~~~~~~-~~g~~~~~~i~g~l~~~~g~~~------~~~~~~~~~~~~~~~~~~~~~~  471 (486)
                      ++++++... .+|..+|..+.|+++|+.|...      .+.+.+++.++..++.+++.|+
T Consensus       338 ~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~  397 (400)
T PF03825_consen  338 AQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKP  397 (400)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            999998875 6999999999999999987553      3344444445555555555433

>TIGR00788 fbt folate/biopterin transporter

Probab=99.93  E-value=4.1e-24  Score=205.30  Aligned_cols=369  Identities=11%  Similarity=0.034  Sum_probs=248.0

Q ss_pred             HHHHHHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhc-----chHHHHHHHH
Q 011416           24 CFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYG-----RRMGFLGEAL   98 (486)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G-----~r~~~~~~~~   98 (486)
                      ...+.++...++..++.........|.+.+++|+|.++++...+...+...+-.+ +|.++||++     ||+.++++.+
T Consensus        25 ~~~~~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~  103 (468)
T TIGR00788        25 RVVLAIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGL  103 (468)
T ss_pred             chHHHHHHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHH
Confidence            3455556667788887744444566667778999999999999999999999655 999999998     7777888877


Q ss_pred             HH-HHhhhhhhcCCCHHHHH-HHHHHHHhccCcc-hhhhhhhccccCCCchhHH---HHHHHHHHHHHHHHHHHHHHHHh
Q 011416           99 VT-AGAGLLSSFSPNYITLI-TLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMW---MVIFSSFWTIGSVSEAIGAWIIM  172 (486)
Q Consensus        99 ~~-~~~~~~~~~a~~~~~l~-~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~---~~~~~~~~~~G~~i~~~l~~~l~  172 (486)
                      +. +++....+..++..... +.+++.+++.+.. .+.-++..|..+ +++...   .+......++|.++++.+++.+.
T Consensus       104 l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~  182 (468)
T TIGR00788       104 LGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLL  182 (468)
T ss_pred             HHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHH
Confidence            76 34444445555654444 4888999999888 777799999987 444443   33444445689999999999999


Q ss_pred             cCCCcHHHHHHhHHHHHHHHHHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccch
Q 011416          173 PRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELV  252 (486)
Q Consensus       173 ~~~~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (486)
                      +.++||..|++.+++.++..+...+++|++.....+.++++ .........                             
T Consensus       183 ~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~-~~~~~~~~~-----------------------------  232 (468)
T TIGR00788       183 DKTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYL-EMNMALLTL-----------------------------  232 (468)
T ss_pred             HhcCcchHHHHHHHHHHHHHHHHHhcccccccccccccccc-hhhhhhhhh-----------------------------
Confidence            99999999999888877776666777876311000000000 000000000                             


Q ss_pred             hhcccCCCCCcccCCCchhhhHhhhchhhHHHHHHHHHH-HHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchh
Q 011416          253 HLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLL-LFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANL  331 (486)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (486)
                              ......+......+..++++..+..+...++ +.           ..+.......   .......|.++...
T Consensus       233 --------~~~~~~~~~~~~l~~~l~~~~i~~~l~fifl~~~-----------~~~~~~~~~f---~~~~~~lG~s~~~~  290 (468)
T TIGR00788       233 --------GVLANVKVQILGLRGAIQLLEIAKPLIFIFLSYA-----------NLPGASGSVF---CATTQCLPGGPSFS  290 (468)
T ss_pred             --------hHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHh-----------hcCCCCceeE---EEEcccCCCCcchh
Confidence                    0000000000122222333322222221111 11           0010000000   01113568999999


Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhh----------chhHHHHHHHHHHHHhhhhhhh
Q 011416          332 YIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY----------QSNILTTGLLFGARMCVMGAFT  401 (486)
Q Consensus       332 ~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~  401 (486)
                      |......+++.+++..+.+++.+|++.|+.+.++.++.+++.+.....          .+.+.......+.+++.+..+.
T Consensus       291 G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~  370 (468)
T TIGR00788       291 GMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFM  370 (468)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHc
Confidence            999999999999999999999999999999999988888876553210          2233344455666777777778


Q ss_pred             hHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011416          402 VSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH  446 (486)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g  446 (486)
                      ....++.+..|++.+|+.+++.+.+.++|..+++.++|.+.+..|
T Consensus       371 ~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       371 PFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             cHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            889999999999999999999999999999999999999999888

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.93  E-value=5.2e-23  Score=187.57  Aligned_cols=380  Identities=13%  Similarity=0.088  Sum_probs=245.4

Q ss_pred             HHHHHHHHHhhHhhhhchhchhhhh-cCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHH--Hhh-h
Q 011416           30 AGLGWVAEAMEIMILSFVGPTVKSE-WNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTA--GAG-L  105 (486)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~--~~~-~  105 (486)
                      ..+.+++.++.....-+..|.+.++ .|+|.+|+|.+.++..+...+.+|+.|.++||.|.||-++.......  .+. .
T Consensus        12 ~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff   91 (412)
T PF01306_consen   12 LSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFF   91 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHH
Confidence            3445556666677777788877765 89999999999999999999999999999999997776554433222  222 2


Q ss_pred             hhhcC----CCHH-HHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHH
Q 011416          106 LSSFS----PNYI-TLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRW  179 (486)
Q Consensus       106 ~~~~a----~~~~-~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~  179 (486)
                      ...+.    .|.+ ..+++-+..|+..... ++.-+++.++.  ++.+.-.|-.....++|.+++..++|.+.+ .+-+.
T Consensus        92 ~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~-i~p~~  168 (412)
T PF01306_consen   92 IYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFN-INPNI  168 (412)
T ss_dssp             HHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeee-eCccH
Confidence            22222    2322 1222222223332222 33334443333  334455677788889999999999999876 45567


Q ss_pred             HHHHhHHHHHHHHHHhhcc-CCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccC
Q 011416          180 LLGLSSIPSFILLAFLGFQ-PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSN  258 (486)
Q Consensus       180 ~f~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (486)
                      .|++....+++..++.... |+.++....++..++                                             
T Consensus       169 ~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~~---------------------------------------------  203 (412)
T PF01306_consen  169 IFWIASAAAIILLLLLLLLKPDVPPQAEVADALGA---------------------------------------------  203 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSSS---------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHcCCcCchhhhhhccccc---------------------------------------------
Confidence            7887766665554443333 333221111100000                                             


Q ss_pred             CCCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHH----HHHHHhhhccccccCCCCccccCCCCCchhHHH
Q 011416          259 GGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYA----VVLLISELSSLDTRCRSPLMFSHHPQDANLYID  334 (486)
Q Consensus       259 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (486)
                           ++++...+...++++.+.   ++.+.+........++.    ...+...+.           +..+.++...|..
T Consensus       204 -----~~~~~~~~~~~~l~k~~~---fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f-----------~~~~~g~~~~G~l  264 (412)
T PF01306_consen  204 -----KKDKVSLKDVLSLFKMRN---FWFFVLFVIGVAAIYDVFDQQFPIYFASFF-----------QSAGQGNQMYGYL  264 (412)
T ss_dssp             -----------HHHHHHHTTSHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-----------SSHHHHHHHHHHH
T ss_pred             -----CCCCCcHHHHHHHhcchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------cccccChhHHhHH
Confidence                 000001113334444443   33333332222222222    223333222           2223455667888


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhhcccccccc
Q 011416          335 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTS  414 (486)
Q Consensus       335 ~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (486)
                      .+...+..++...+.+++.+|+|.|+.+.++..++++=.+...+.++++.....-.+.++-.........-++.+.+|++
T Consensus       265 ~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~r  344 (412)
T PF01306_consen  265 WSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKR  344 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GG
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHh
Confidence            88888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhHhHHH-HHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhcccccccCCC
Q 011416          415 VRSTGAGAA-NAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQE  476 (486)
Q Consensus       415 ~~~~~~g~~-~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (486)
                      ..++.+.+. +...+++..+.+.+.|.++|+.|+..++++++.+.+...++..+..++.+++.
T Consensus       345 lsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~~~  407 (412)
T PF01306_consen  345 LSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKKQI  407 (412)
T ss_dssp             GHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSSTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCccc
Confidence            999999986 56678999999999999999999998999999888888777777765554433

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK09669 putative symporter YagG; Provisional

Probab=99.93  E-value=1.5e-22  Score=195.02  Aligned_cols=331  Identities=11%  Similarity=-0.008  Sum_probs=219.6

Q ss_pred             chhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhh----hcch-HHHHHHHHHHHHhhhhhhcCCC------HH
Q 011416           46 FVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADN----YGRR-MGFLGEALVTAGAGLLSSFSPN------YI  114 (486)
Q Consensus        46 ~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr----~G~r-~~~~~~~~~~~~~~~~~~~a~~------~~  114 (486)
                      .+.+.+.+++|++..++|.+.++..+..++..|+.|.++||    +||| +.++.+....+++..+....++      ++
T Consensus        31 ~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~  110 (444)
T PRK09669         31 FLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKII  110 (444)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHH
Confidence            44566788899999999999999999999999999999998    7774 5566777777777766555543      34


Q ss_pred             HHHHHHHHHHhccCcc-hhhhhhhcccc-CCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCCcHHHHHHhH
Q 011416          115 TLITLRCLVGVGLGSG-HVFLSWFLEFV-PPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMP-------RLDWRWLLGLSS  185 (486)
Q Consensus       115 ~l~~~r~l~G~~~~~~-~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~-------~~~w~~~f~~~~  185 (486)
                      .+++..++.+.+.... .+..++..|+. ++++|++..++...+..+|..+++.+...+..       ..+|+..+.+.+
T Consensus       111 ~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~  190 (444)
T PRK09669        111 YACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMG  190 (444)
T ss_pred             HHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHH
Confidence            5566666666665555 55567888988 56889999898888888888887765544332       347888888877


Q ss_pred             HHHHHHHHH-hhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCCCCcc
Q 011416          186 IPSFILLAF-LGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTT  264 (486)
Q Consensus       186 ~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (486)
                      +++++..+. ++..+|.++..  ++++                                                     
T Consensus       191 ii~~v~~~~~~~~~~e~~~~~--~~~~-----------------------------------------------------  215 (444)
T PRK09669        191 LLGVVLFFCCFFMTKERYTPE--VDNS-----------------------------------------------------  215 (444)
T ss_pred             HHHHHHHHHHhCCeEEecCCC--CcCC-----------------------------------------------------
Confidence            777665443 33344432100  0000                                                     


Q ss_pred             cCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHH
Q 011416          265 EGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIP  344 (486)
Q Consensus       265 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  344 (486)
                        .+....++.+++++.++......+...........   ....+.+           ....++...+.......+..++
T Consensus       216 --~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~---~~~y~~~-----------~~~~~~~~~~~~~~~~~i~~ii  279 (444)
T PRK09669        216 --SSVWKDLKLLLGNSQWRIMFIFNVVLLTAVVTRGG---ATLYYVN-----------YVLLRPDLATLFLVTGMIAGLF  279 (444)
T ss_pred             --CCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhh---hhheeee-----------eecCCHHHHHHHHHHHHHHHHH
Confidence              00011455566666544443333222111111111   1121111           0111223333444555677788


Q ss_pred             HHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhh--hchhHHHHHHHHHHHHhhhhhhhhHhhhcccccc-------ccc
Q 011416          345 GLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT--YQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYP-------TSV  415 (486)
Q Consensus       345 ~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~  415 (486)
                      +.++.+++.||+|+|+....+.++.++..+.+..  .++.+...+..++.+++.+...+..+++.+|..+       ++.
T Consensus       280 ~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~  359 (444)
T PRK09669        280 GALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRL  359 (444)
T ss_pred             HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCc
Confidence            8899999999999999988777665543332222  3445556666677888888888999999988874       344


Q ss_pred             hhhHhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011416          416 RSTGAGAANAMGRIGGMVCPLVAVALVANCHQ  447 (486)
Q Consensus       416 ~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~  447 (486)
                      .|..+|..+.+..+|..+++.+.|.+.+..|+
T Consensus       360 ~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        360 DGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            57788999999999999999999999998876

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.92  E-value=8.2e-21  Score=180.35  Aligned_cols=348  Identities=15%  Similarity=0.123  Sum_probs=242.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHH-HHHHHHHhhhhhhcC-CC-HHHHHHHHHHHHhccCcc-hhhhhh
Q 011416           61 EESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLG-EALVTAGAGLLSSFS-PN-YITLITLRCLVGVGLGSG-HVFLSW  136 (486)
Q Consensus        61 ~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~-~~~~~~~~~~~~~~a-~~-~~~l~~~r~l~G~~~~~~-~~~~~~  136 (486)
                      ..++..++..+..++..|+.|.++|+-|+||.++. ...+..+++.++.+. ++ ++...+.-++.-++.+.. ....++
T Consensus        71 ~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~  150 (477)
T PF11700_consen   71 LWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAY  150 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45778899999999999999999999987665554 555555666666664 44 444444444444555555 445588


Q ss_pred             hccccCCCch--------------------------hHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CCcHHHHH
Q 011416          137 FLEFVPPSNR--------------------------GMWMVIFSSFWTIGSVSEAIGAWIIMPR--------LDWRWLLG  182 (486)
Q Consensus       137 i~~~~~~~~r--------------------------~~~~~~~~~~~~~G~~i~~~l~~~l~~~--------~~w~~~f~  182 (486)
                      +.|..+++++                          ++..+.-.+...+|.++...+...+...        .+-|..+.
T Consensus       151 LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~  230 (477)
T PF11700_consen  151 LPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFL  230 (477)
T ss_pred             hHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHH
Confidence            9999998888                          9999999999999998887776655321        23588888


Q ss_pred             HhHHHHHHH-HHHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCCC
Q 011416          183 LSSIPSFIL-LAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGN  261 (486)
Q Consensus       183 ~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (486)
                      +.++..++. +...+++||.|+....++.........+++.+                                      
T Consensus       231 ~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~--------------------------------------  272 (477)
T PF11700_consen  231 IVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRLWR--------------------------------------  272 (477)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHHHH--------------------------------------
Confidence            888876665 45567778876521111111112222222221                                      


Q ss_pred             CcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhh
Q 011416          262 KTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLA  341 (486)
Q Consensus       262 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  341 (486)
                                .++++.+.+....+   .+.++...-...++..+...+.          .++.+++..+.........+.
T Consensus       273 ----------t~k~~~~~~~~~~f---Lia~~l~~dg~~ti~~~~~i~a----------~~~lg~s~~~l~~~~l~~~i~  329 (477)
T PF11700_consen  273 ----------TFKEIRKLRQLFLF---LIAYFLYSDGVNTIISFAGIYA----------TEVLGMSTTQLIVFGLVVQIV  329 (477)
T ss_pred             ----------HHHHHHhChHHHHH---HHHHHHHHHHHHHHHHHHHHHH----------HHhcCcCHHHHHHHHHHHHHH
Confidence                      33444333333333   3333332223333333333222          134589999999999999999


Q ss_pred             HHHHHHHHHHHHHHhchh--HHHHHHHHHHHHHHHHHhh--------hchhHHHHHHHHHHHHhhhhhhhhHhhhccccc
Q 011416          342 EIPGLLLAAILVDTAGRK--LSITIMFTLSCLFLLPLVT--------YQSNILTTGLLFGARMCVMGAFTVSLIYAAEIY  411 (486)
Q Consensus       342 ~~~~~~~~g~l~dr~g~~--~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (486)
                      +++|.++.|++.||+|.|  +.+.++..+..+..+...+        ..+.+.+++..++.|++.++.++..-++.+|+.
T Consensus       330 a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~Li  409 (477)
T PF11700_consen  330 AIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLI  409 (477)
T ss_pred             HHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhC
Confidence            999999999999999988  7777666665443333332        566778888889999999999999999999999


Q ss_pred             cccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHHHHhccc
Q 011416          412 PTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH-QMTAVVLLVVVIVTSILSVMLIP  469 (486)
Q Consensus       412 ~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~  469 (486)
                      |+++.+..+|++...+...+.+||.+.|.+.+.+| .+..+....++.+++.++.+...
T Consensus       410 P~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~  468 (477)
T PF11700_consen  410 PPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVD  468 (477)
T ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcc
Confidence            99999999999999999999999999999999998 55666666666666666665443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.91  E-value=1.7e-24  Score=180.35  Aligned_cols=384  Identities=12%  Similarity=0.013  Sum_probs=251.0

Q ss_pred             hHHHHHHHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhh-hcchHHHHHHHHHH
Q 011416           22 YQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADN-YGRRMGFLGEALVT  100 (486)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~G~r~~~~~~~~~~  100 (486)
                      .|...+..+|+..|-.++.....+....+..++.+++.++..++.+.|++-..+...++|++.|| +|.|..-++-++..
T Consensus        41 hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv  120 (459)
T KOG4686|consen   41 HRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFV  120 (459)
T ss_pred             hHHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHH
Confidence            34556666666667777778888888888999999999999999999999999999999999996 68888777777777


Q ss_pred             HHhhhhhh---cCCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 011416          101 AGAGLLSS---FSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLD  176 (486)
Q Consensus       101 ~~~~~~~~---~a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~  176 (486)
                      .+|.++++   ..+.+|++.++||+.|+|.-.. .+-..+..-|+..||.+.++|+..+...+|..+-..+.+++.+..+
T Consensus       121 ~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~  200 (459)
T KOG4686|consen  121 FLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMG  200 (459)
T ss_pred             HHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHH
Confidence            77776664   4578999999999999998777 5556899999999999999999999999998877666666654322


Q ss_pred             c------HHHH---HHhHHHHHHHHHHhhccCCCchhhhhcCChHH-HHHHHHHHHHhcCCCCCCchhhhccccCCCCCC
Q 011416          177 W------RWLL---GLSSIPSFILLAFLGFQPESPRYLCLKGRTAE-AHRALEKIAQVNKTKLPNGKLVARRSTLPTGER  246 (486)
Q Consensus       177 w------~~~f---~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (486)
                      -      +...   ...+......-+..         ....+-.|+ +++.++   .++...-                 
T Consensus       201 ~~~~~~ghT~LG~~l~~~~~tc~~slic---------al~lg~~D~rAerilh---~e~g~~G-----------------  251 (459)
T KOG4686|consen  201 RMFPGVGHTLLGLWLCFEVKTCKQSLIC---------ALSLGLSDDRAERILH---LEEGFLG-----------------  251 (459)
T ss_pred             HhcccchHHHHHHHHHHHHHHHHHHHHH---------HHHhhhhhhHHHHHHh---hhcCccc-----------------
Confidence            1      0000   00111111100000         000011111 111111   1000000                 


Q ss_pred             CCccchhhcccCCCCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCC
Q 011416          247 APPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHP  326 (486)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (486)
                                     +++       .+.+.  +...+.++++.....+.....+.+...-|.+.          .+++|.
T Consensus       252 ---------------e~p-------kLtdv--~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF----------~~rfGl  297 (459)
T KOG4686|consen  252 ---------------EEP-------KLTDV--NTFYPPFWVLVIICVLYYVAWFPFITLGPMFF----------QKRFGL  297 (459)
T ss_pred             ---------------CCc-------ccccc--cccCccHHHHHHHHHHHHHHHHHHhhhhHHHH----------HHhhCC
Confidence                           000       00000  11112333333333333333333333333333          356789


Q ss_pred             CCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHH-HHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhh
Q 011416          327 QDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLF-LLPLVTYQSNILTTGLLFGARMCVMGAFTVSLI  405 (486)
Q Consensus       327 ~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (486)
                      |+..++...+.......+.+++.|.++||+|++...+.+..+..+. -..+.+  +.+..+..+.+.|......-...|.
T Consensus       298 S~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsysllAcslWP  375 (459)
T KOG4686|consen  298 SAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSYSLLACSLWP  375 (459)
T ss_pred             ChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhHHHHHHHHhh
Confidence            9999999988888899999999999999999988776655544432 222222  2233345556667766666666888


Q ss_pred             hccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhccc----hHHHHHHHHHHHHHHHHhcccc
Q 011416          406 YAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQM----TAVVLLVVVIVTSILSVMLIPF  470 (486)
Q Consensus       406 ~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~  470 (486)
                      .++.+.|+++.|+++|..+.+.++|-.+.|++.|.+.|..|.+    ..|+..+.+.+....+.+.+.+
T Consensus       376 ~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~N~  444 (459)
T KOG4686|consen  376 CVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYLNK  444 (459)
T ss_pred             hhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhheec
Confidence            8899999999999999999999999999999999999987732    2233444444544444554443

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.91  E-value=2e-21  Score=183.95  Aligned_cols=382  Identities=14%  Similarity=0.015  Sum_probs=222.2

Q ss_pred             HHHHHHHHHHHHhhHhhhhchhchh-hhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhh-cchHHHHHHHHHHHHhh
Q 011416           27 LAYAGLGWVAEAMEIMILSFVGPTV-KSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNY-GRRMGFLGEALVTAGAG  104 (486)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-G~r~~~~~~~~~~~~~~  104 (486)
                      +..++...+...+..+.+...+|.+ .+++|++..+.+.+.+.+.....++.+++|+++||+ |||+++.++.++.+++.
T Consensus        11 l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~   90 (493)
T PRK15462         11 IYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGH   90 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHH
Confidence            3334444455555555555555554 567899999999999999999999999999999999 99999999999999998


Q ss_pred             hhhhcCC-CHHHHHHHHHHHHhccCcc-hhhhhhhccccCCC--chhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHH
Q 011416          105 LLSSFSP-NYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPS--NRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWL  180 (486)
Q Consensus       105 ~~~~~a~-~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~  180 (486)
                      ++++..+ +...+.+...+.++|.|.. +...+++.|.+|++  +|..++++.+.+.++|..++|.+.+++.+..||++.
T Consensus        91 lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~  170 (493)
T PRK15462         91 VVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMG  170 (493)
T ss_pred             HHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHH
Confidence            7776543 2233444445555666766 66678899999875  699999999999999999999999999999999999


Q ss_pred             HHHhHHHHHHHHHHhhccCCCchhh-hhcCChHHHHHHHHH--------------HHHhcCCCCCCchhhhccccCCCCC
Q 011416          181 LGLSSIPSFILLAFLGFQPESPRYL-CLKGRTAEAHRALEK--------------IAQVNKTKLPNGKLVARRSTLPTGE  245 (486)
Q Consensus       181 f~~~~~~~~~~~~~~~~~~e~~~~~-~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~  245 (486)
                      |.+.++..++.++.+....+..... ..++++.+.++....              .....-.+........-....    
T Consensus       171 F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  246 (493)
T PRK15462        171 FGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATII----  246 (493)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence            9987664444333332221110000 000000000000000              000000000000000000000    


Q ss_pred             CCCccchhhcccCCCCCcccCCCchhhhHhhhchhhHHHHHHHHHHHH---HHHHH----HHHHHHHHhhhccccccCCC
Q 011416          246 RAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLF---GNSFA----YYAVVLLISELSSLDTRCRS  318 (486)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~  318 (486)
                           .......             ...+. .++..++++........   .....    ...+..+.....+       
T Consensus       247 -----~~~~~~~-------------~~~~~-~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd-------  300 (493)
T PRK15462        247 -----GLGVLAK-------------IYRKA-ENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVN-------  300 (493)
T ss_pred             -----HHHHHHH-------------HHHhc-CCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc-------
Confidence                 0000000             00000 01111122222111111   11111    1122222221110       


Q ss_pred             CccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhch--hH-----HHHHHHHHHHHHHHHHhh----h-----chh
Q 011416          319 PLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGR--KL-----SITIMFTLSCLFLLPLVT----Y-----QSN  382 (486)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~--~~-----~~~~~~~~~~~~~~~~~~----~-----~~~  382 (486)
                        .+-.|+. ....+..++..+..++.+++.+++-.|..+  |.     -..+++++++++++.+..    .     .+.
T Consensus       301 --~~~~g~~-ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~  377 (493)
T PRK15462        301 --RDMFGYT-VPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSL  377 (493)
T ss_pred             --chhccee-eCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCH
Confidence              0011222 335566677777777777777777666522  21     256777888887766643    1     244


Q ss_pred             HHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHHH-HHHHHHHHHHHHHH
Q 011416          383 ILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMG-RIGGMVCPLVAVAL  441 (486)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~g~~~~~~i~g~l  441 (486)
                      ++++...++..++.-...|+..+.+++..|++.+|..+|+..... .+|..++..+.+..
T Consensus       378 ~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~  437 (493)
T PRK15462        378 PLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQT  437 (493)
T ss_pred             HHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            567777788889999999999999999999999999999985533 45555555554433

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.90  E-value=3.9e-21  Score=186.14  Aligned_cols=347  Identities=10%  Similarity=-0.031  Sum_probs=221.8

Q ss_pred             HHHHhhHhhhhc-hhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhcc-hHHHHHHHHHHHHhhhhhh
Q 011416           35 VAEAMEIMILSF-VGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVAD----NYGR-RMGFLGEALVTAGAGLLSS  108 (486)
Q Consensus        35 ~~~~~~~~~~~~-~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d----r~G~-r~~~~~~~~~~~~~~~~~~  108 (486)
                      +...+......+ +...+.+.+|++..++|.+..+..+..++..|+.|.++|    |+|| |+.++.+....+++..++.
T Consensus        16 ~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf   95 (473)
T PRK10429         16 FGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLF   95 (473)
T ss_pred             hHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHH
Confidence            333333334433 345566778999999999999999999999999999999    6698 6667778888888766665


Q ss_pred             cCCC------HHHHHHHHHHHHhccCcc-hhhhhhhcccc-CCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc-------
Q 011416          109 FSPN------YITLITLRCLVGVGLGSG-HVFLSWFLEFV-PPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMP-------  173 (486)
Q Consensus       109 ~a~~------~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~-------  173 (486)
                      ..++      +..+++..++.+++.... .+..++..|.. +++||.+..++...+.++|..+.+.+...+.+       
T Consensus        96 ~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~  175 (473)
T PRK10429         96 SAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDR  175 (473)
T ss_pred             cCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCch
Confidence            4332      334555666677777766 56668888988 68999999998777777776666555443321       


Q ss_pred             CCCcHHHHHHhHHHHHHHHHH-hhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccch
Q 011416          174 RLDWRWLLGLSSIPSFILLAF-LGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELV  252 (486)
Q Consensus       174 ~~~w~~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (486)
                      ..+|+....+.+++.++..+. .+..+|.+.....+.+.+                                        
T Consensus       176 ~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~----------------------------------------  215 (473)
T PRK10429        176 GFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSAEG----------------------------------------  215 (473)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHcCceecCCccccccccc----------------------------------------
Confidence            235677666666665554333 334555431100000000                                        


Q ss_pred             hhcccCCCCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhH
Q 011416          253 HLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLY  332 (486)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (486)
                                  ++.+....++.+++++..+.++.   ..+......+....+.+.+.+           ....+....+
T Consensus       216 ------------~~~~~~~~~~~~~~n~~~~~ll~---~~~~~~~~~~~~~~~~~y~~~-----------y~~~~~~~~~  269 (473)
T PRK10429        216 ------------SHLTLKDIVALIYKNDQLSCLLG---MALAYNIASNIINGFAIYYFT-----------YVIGDADLFP  269 (473)
T ss_pred             ------------cCCCHHHHHHHHhcCHHHHHHHH---HHHHHHHHHHHHhhheeeEEE-----------EECCCHHHHH
Confidence                        00000113444445544333222   222222333333333332321           1122344455


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhh-----hchhHHHHHHHHHHHHhhhhhhhhHhhhc
Q 011416          333 IDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT-----YQSNILTTGLLFGARMCVMGAFTVSLIYA  407 (486)
Q Consensus       333 ~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (486)
                      .......++.+++.++.+++.||+|+|+.+.++..+.+++.+.+..     ..+.+...+..++.+++.+...+..+++.
T Consensus       270 ~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~  349 (473)
T PRK10429        270 YYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMV  349 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666667888999999999999999999988777765554444322     23344555556667788888888888888


Q ss_pred             ccccc-------ccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011416          408 AEIYP-------TSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQ  447 (486)
Q Consensus       408 ~~~~~-------~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~  447 (486)
                      +|..+       ++..|..+|....+..++..+++.+.|.+.+..|+
T Consensus       350 ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        350 ADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             hhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            88854       44457789999999999999999999999988775

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.89  E-value=5.1e-21  Score=171.18  Aligned_cols=395  Identities=15%  Similarity=0.093  Sum_probs=286.0

Q ss_pred             CCCchHHHHHHHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHH
Q 011416           18 GFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEA   97 (486)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~   97 (486)
                      +..++||.+++..++..+.+.+.+-.+++.......-+| +....-|+.-+|.+.+....+++-|+.||+|-|....++.
T Consensus        38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt  116 (480)
T KOG2563|consen   38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGT  116 (480)
T ss_pred             ccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHH
Confidence            355789999999999999999999999998888888889 8888899999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhhcCC------CHH--HHHHHHHHHHhccCcchhh-hhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 011416           98 LVTAGAGLLSSFSP------NYI--TLITLRCLVGVGLGSGHVF-LSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGA  168 (486)
Q Consensus        98 ~~~~~~~~~~~~a~------~~~--~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~  168 (486)
                      .+.++|..+-..+.      .++  ....+..+.+.+.-..... .....-|++++||..+..+-..+..+|.+++.++.
T Consensus       117 ~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llp  196 (480)
T KOG2563|consen  117 VLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLP  196 (480)
T ss_pred             HHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhcc
Confidence            99999998877663      345  6667888888877766444 34556899999999999999999999999999998


Q ss_pred             HHHhcCC------CcHH--HHHHhHHHHHHHHH-HhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccc
Q 011416          169 WIIMPRL------DWRW--LLGLSSIPSFILLA-FLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRS  239 (486)
Q Consensus       169 ~~l~~~~------~w~~--~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (486)
                      ..+..+-      .|..  .|+...+++.+.++ ..+..++.|+......+..+.                         
T Consensus       197 pilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~~-------------------------  251 (480)
T KOG2563|consen  197 PILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAALQ-------------------------  251 (480)
T ss_pred             ceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhhh-------------------------
Confidence            8876543      4655  34444444444333 233344444321110000000                         


Q ss_pred             cCCCCCCCCccchhhcccCCCCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCC
Q 011416          240 TLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSP  319 (486)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (486)
                                                +.....+.+..+++   +.+.+..+.+......+++....+....         
T Consensus       252 --------------------------~~~f~~si~~~~~n---~~F~il~~~ygi~~g~F~~l~~~l~~~l---------  293 (480)
T KOG2563|consen  252 --------------------------DASFPKSIKSCFKN---RQFIILAICYGIGLGLFNSLSTLLNLAL---------  293 (480)
T ss_pred             --------------------------cCcHHHHHHHHHcC---ccHHHHHHHHhhhHHHHHHHHHHhhhcc---------
Confidence                                      00011144444444   4466666777777777777776666322         


Q ss_pred             ccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhch-hHHHHHHHHHHHHHHHHH-hh---hchhHHHHHHHHHHHH
Q 011416          320 LMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGR-KLSITIMFTLSCLFLLPL-VT---YQSNILTTGLLFGARM  394 (486)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~-~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~  394 (486)
                        ...|++...+|.......++++++..+.|.+.||.+. |....+......++...+ ..   ....+.+.....+.|+
T Consensus       294 --~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~  371 (480)
T KOG2563|consen  294 --CPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGF  371 (480)
T ss_pred             --ccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHH
Confidence              2346777889999999999999999999999999875 444444444444442222 21   3344566667778888


Q ss_pred             hhhhhhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhc----cchHHHHHHHHHHHHHHHHhcccc
Q 011416          395 CVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH----QMTAVVLLVVVIVTSILSVMLIPF  470 (486)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~  470 (486)
                      +..+..|+..-+..|..-|..-++..|+.+..+++-+++-.++.+...+..+    +...-+.....+++..++..++++
T Consensus       372 ~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~  451 (480)
T KOG2563|consen  372 FGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRP  451 (480)
T ss_pred             hhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhh
Confidence            8899999999999998766777888999999999999999999999888777    555556666666777777777665


Q ss_pred             cccCCCcc
Q 011416          471 ETKGQELS  478 (486)
Q Consensus       471 ~~~~~~~~  478 (486)
                      +.++++.+
T Consensus       452 ~y~R~~~e  459 (480)
T KOG2563|consen  452 DYRRLRAE  459 (480)
T ss_pred             hHHhHhhh
Confidence            54444433

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.89  E-value=9.7e-21  Score=181.47  Aligned_cols=333  Identities=19%  Similarity=0.135  Sum_probs=244.7

Q ss_pred             chhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhcchHH-HHHHHHHHHHhhhhhhcC-C-------C
Q 011416           46 FVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVAD----NYGRRMG-FLGEALVTAGAGLLSSFS-P-------N  112 (486)
Q Consensus        46 ~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d----r~G~r~~-~~~~~~~~~~~~~~~~~a-~-------~  112 (486)
                      ...+.+.+.+|+++...|.+..+..+..++..|+.|.++|    |+||||. ++++....+++..++... +       .
T Consensus        23 ~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~  102 (428)
T PF13347_consen   23 YLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAK  102 (428)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhH
Confidence            4456677888999999999999999999999999999999    8997654 556888888888877766 4       2


Q ss_pred             HHHHHHHHHHHHhccCcc-hhhhhhhccccC-CCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------CcHHHHHH
Q 011416          113 YITLITLRCLVGVGLGSG-HVFLSWFLEFVP-PSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRL-------DWRWLLGL  183 (486)
Q Consensus       113 ~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~-------~w~~~f~~  183 (486)
                      ...+.+..++..++.... .+..++..|..+ +++|.+..+.-..+..+|.++...+...+.+..       +|++...+
T Consensus       103 ~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v  182 (428)
T PF13347_consen  103 LVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALV  182 (428)
T ss_pred             HHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHH
Confidence            233566677778888777 566688899997 578999999999999999876666666554322       69998888


Q ss_pred             hHHHHHHHHHH-hhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCCCC
Q 011416          184 SSIPSFILLAF-LGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNK  262 (486)
Q Consensus       184 ~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (486)
                      .+++.++..+. .+..+|+++.      .++                                                 
T Consensus       183 ~~iv~~v~~~i~~~~~ke~~~~------~~~-------------------------------------------------  207 (428)
T PF13347_consen  183 LAIVGLVFFLITFFFVKERSVE------VTE-------------------------------------------------  207 (428)
T ss_pred             HHHHHHHHhhhhhheeeecccc------ccc-------------------------------------------------
Confidence            88887776444 5555661110      000                                                 


Q ss_pred             cccCCCchhhhHhhhchhhHHHHHHHHHHH-HHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhh
Q 011416          263 TTEGKSGLSLFLMLFSSKLARTTILLWLLL-FGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLA  341 (486)
Q Consensus       263 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  341 (486)
                      +.++.+....++.+++++..+......++. +..........++..+..              +.+ ...+.......+.
T Consensus       208 ~~~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl--------------~~~-~~~~~~~~~~~~~  272 (428)
T PF13347_consen  208 QEKKISLRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVL--------------GNE-GLISIFMLIFFVA  272 (428)
T ss_pred             cccccccccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHh--------------cCc-hhhHHHHHHHHHH
Confidence            000001111456666666555544444433 233333333334444333              222 4556667788889


Q ss_pred             HHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhc--hhHHHHHHHHHHHHhhhhhhhhHhhhcccccc-------
Q 011416          342 EIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQ--SNILTTGLLFGARMCVMGAFTVSLIYAAEIYP-------  412 (486)
Q Consensus       342 ~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  412 (486)
                      .+++.++.++++||+|+|+.+..+..+.+++.+.+.+..  +.+...+...+.+++.+..+...+++.+|..+       
T Consensus       273 ~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg  352 (428)
T PF13347_consen  273 SIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTG  352 (428)
T ss_pred             HHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcC
Confidence            999999999999999999999999999999888877754  78888888899999999999999999999876       


Q ss_pred             ccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 011416          413 TSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQM  448 (486)
Q Consensus       413 ~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~  448 (486)
                      ++..|..+|+.+....++..+++.+.+.+.+..|+.
T Consensus       353 ~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy~  388 (428)
T PF13347_consen  353 RRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGYD  388 (428)
T ss_pred             CCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCcC
Confidence            345699999999999999999999999998887643

>TIGR01272 gluP glucose/galactose transporter

Probab=99.88  E-value=3.2e-20  Score=168.51  Aligned_cols=277  Identities=13%  Similarity=0.065  Sum_probs=196.6

Q ss_pred             cCCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcC-------------
Q 011416          109 FSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPR-------------  174 (486)
Q Consensus       109 ~a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~-------------  174 (486)
                      ...+|+.++++-++.|.|.+.. +...+++++..++|++.+.+++.+.++++|..++|.+++.+...             
T Consensus         6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~   85 (310)
T TIGR01272         6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATAN   85 (310)
T ss_pred             HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhh
Confidence            4568999999999999999999 88999999999999999999999999999999999999987732             


Q ss_pred             ---CCcHHHHHHhHHHHHHHHHHhhcc--CCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCc
Q 011416          175 ---LDWRWLLGLSSIPSFILLAFLGFQ--PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPP  249 (486)
Q Consensus       175 ---~~w~~~f~~~~~~~~~~~~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (486)
                         .+|+++|++.+++.++..+.+.+.  ||.++    +++ ++..+                                 
T Consensus        86 ~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~----~~~-~~~~~---------------------------------  127 (310)
T TIGR01272        86 AEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE----ADV-ARVSS---------------------------------  127 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc----ccc-ccccc---------------------------------
Confidence               379999997776655554443333  43211    000 00000                                 


Q ss_pred             cchhhcccCCCCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCc
Q 011416          250 ELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDA  329 (486)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (486)
                                     ++..   ..+..+++   +..++..+..++......+...|.+.+..+        .+..|.++.
T Consensus       128 ---------------~~~~---~~~~~~~~---~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~--------~~~~g~s~~  178 (310)
T TIGR01272       128 ---------------GDTT---QKTSAFQF---THLVLGALGIFVYVGAEVSAGSFLVNFLSD--------PHALGLPED  178 (310)
T ss_pred             ---------------cccc---chhhHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------cccCCCCHH
Confidence                           0000   00112222   223333333444444444555555554411        112478899


Q ss_pred             hhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhhccc
Q 011416          330 NLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAE  409 (486)
Q Consensus       330 ~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (486)
                      +.+........+.++|+++++++.||+++|+.+.++..+.+++.++....++.. ......+.+++.+..+|...+...+
T Consensus       179 ~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~-~~~~~~l~g~~~s~i~P~~~s~a~~  257 (310)
T TIGR01272       179 QAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYV-AMWFVLALGLFNSIMFPTIFSLALN  257 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999988888777777665554433332 3345567889999999999999999


Q ss_pred             cccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHH
Q 011416          410 IYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLV  455 (486)
Q Consensus       410 ~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~  455 (486)
                      ..|++ .+++.++. ..+.+|+.+.|.+.|.+.|..|...++++..
T Consensus       258 ~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~  301 (310)
T TIGR01272       258 ALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPV  301 (310)
T ss_pred             hhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHH
Confidence            88754 56777775 6778999999999999999988777766433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK09848 glucuronide transporter; Provisional

Probab=99.88  E-value=9.3e-20  Score=175.91  Aligned_cols=330  Identities=11%  Similarity=-0.069  Sum_probs=202.1

Q ss_pred             hhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhh----cchHHH-HHHHHHHHHhhhhh-hc----CCC--HH
Q 011416           47 VGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNY----GRRMGF-LGEALVTAGAGLLS-SF----SPN--YI  114 (486)
Q Consensus        47 ~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~----G~r~~~-~~~~~~~~~~~~~~-~~----a~~--~~  114 (486)
                      +.+.+.+.+|++..++|.+.+...+..++..|+.|.++||.    |||+.. ..+.+...+...+. ..    .++  ..
T Consensus        31 l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (448)
T PRK09848         31 LLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVV  110 (448)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHH
Confidence            34567778899999999999999999999999999999986    776644 55555444444332 21    122  23


Q ss_pred             HHHHHHHHHHhccCcc-hhhhhhhcccc-CCCchhHHHHHHHHHHH-----HHHHHHHHHHHHHhcCC--CcHHHHHHhH
Q 011416          115 TLITLRCLVGVGLGSG-HVFLSWFLEFV-PPSNRGMWMVIFSSFWT-----IGSVSEAIGAWIIMPRL--DWRWLLGLSS  185 (486)
Q Consensus       115 ~l~~~r~l~G~~~~~~-~~~~~~i~~~~-~~~~r~~~~~~~~~~~~-----~G~~i~~~l~~~l~~~~--~w~~~f~~~~  185 (486)
                      .+++..++.+++.+.. ++..++..+.. ++++|.+..++-..+.+     ++..++|.++....+..  +|.....+.+
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~  190 (448)
T PRK09848        111 YAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLA  190 (448)
T ss_pred             HHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHH
Confidence            3444556677777766 55556666555 44678887766654433     44555565554332111  1211112223


Q ss_pred             HHHHHHH-HHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCCCCcc
Q 011416          186 IPSFILL-AFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTT  264 (486)
Q Consensus       186 ~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (486)
                      +++++.. +.....||+++.   +.++.                                                    
T Consensus       191 v~~~~~~~~~~~~~~e~~~~---~~~~~----------------------------------------------------  215 (448)
T PRK09848        191 IAGMVLYFICFKSTRENVVR---IVAQP----------------------------------------------------  215 (448)
T ss_pred             HHHHHHHHHHHcCcEeccCC---CccCC----------------------------------------------------
Confidence            3333322 223334443210   00000                                                    


Q ss_pred             cCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHH
Q 011416          265 EGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIP  344 (486)
Q Consensus       265 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  344 (486)
                         .....++.+++++.........+   .....+.......+.+.+          +..+.++...++......++.++
T Consensus       216 ---~~~~~~~~l~~n~~f~~~~~~~~---~~~~~~~~~~~~~~~~~~----------~~~g~~~~~~~~~~~~~~~~~~~  279 (448)
T PRK09848        216 ---SLKISLQTLKRNRPLFMLCIGAL---CVLISTFAVSASSLFYVR----------YVLNDTGLFTVLVLVQNLVGTVA  279 (448)
T ss_pred             ---CHHHHHHHHhCCchHHHHHHHHH---HHHHHHHHHhhhheeeEe----------eecCChHHHHHHHHHHHHHHHHH
Confidence               00113555666555433332222   222333333333333321          22355554444444444566788


Q ss_pred             HHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhc--hhHHHHHHHHHHHHhhhhhhhhHhhhcccccccc-------c
Q 011416          345 GLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQ--SNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTS-------V  415 (486)
Q Consensus       345 ~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~  415 (486)
                      +.++.+++.||+++|+.+.++.++.+++.+.+.+.+  +.+......++.+++.+...+..++...|..+.+       .
T Consensus       280 ~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~  359 (448)
T PRK09848        280 SAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRI  359 (448)
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccc
Confidence            899999999999999999999888777776665532  3444555566778888888888888888887643       4


Q ss_pred             hhhHhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011416          416 RSTGAGAANAMGRIGGMVCPLVAVALVANCHQ  447 (486)
Q Consensus       416 ~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~  447 (486)
                      .|..+|+.+....+|..+++.+.|.+.+..|+
T Consensus       360 ~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        360 EGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            69999999999999999999999999887765

>PRK11462 putative transporter; Provisional

Probab=99.87  E-value=6.9e-19  Score=169.20  Aligned_cols=329  Identities=12%  Similarity=-0.010  Sum_probs=210.2

Q ss_pred             hhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhh----hcchH-HHHHHHHHHHHhhhhhhcCCC------HHH
Q 011416           47 VGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADN----YGRRM-GFLGEALVTAGAGLLSSFSPN------YIT  115 (486)
Q Consensus        47 ~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr----~G~r~-~~~~~~~~~~~~~~~~~~a~~------~~~  115 (486)
                      +...+.+.+|+++..+|.+..+.-+--++..|+.|.++||    +|||| .++++....+++.+++...++      ...
T Consensus        32 l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y  111 (460)
T PRK11462         32 MMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIY  111 (460)
T ss_pred             HHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHH
Confidence            4455677889999999999999999999999999999995    68864 555677788887776655543      334


Q ss_pred             HHHHHHHHHhccCcc-hhhhhhhccccC-CCchhHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CCcHHHHHHhHH
Q 011416          116 LITLRCLVGVGLGSG-HVFLSWFLEFVP-PSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPR-------LDWRWLLGLSSI  186 (486)
Q Consensus       116 l~~~r~l~G~~~~~~-~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~-------~~w~~~f~~~~~  186 (486)
                      +++.-++..++.... .+-.++..|..+ ++||++..++...+..+|..+++.+...+.+.       .+|+....+.++
T Consensus       112 ~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~i  191 (460)
T PRK11462        112 AAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSV  191 (460)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHH
Confidence            555666667777766 555577888876 78999999999999999988887776554432       357777777776


Q ss_pred             HHHHHHHH-hhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCCCCccc
Q 011416          187 PSFILLAF-LGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTE  265 (486)
Q Consensus       187 ~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (486)
                      +.++..+. ....+|.++.   ++++..                                                    
T Consensus       192 i~~i~~~i~~~~~kE~~~~---~~~~~~----------------------------------------------------  216 (460)
T PRK11462        192 VAFMMLAFCFFTTKERVEA---PPTTTS----------------------------------------------------  216 (460)
T ss_pred             HHHHHHHHHHhcceeccCC---CccCCC----------------------------------------------------
Confidence            66655433 3334443211   000000                                                    


Q ss_pred             CCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHH
Q 011416          266 GKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPG  345 (486)
Q Consensus       266 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  345 (486)
                         ....++..++++.++.+....+..........+...+...+.             .+ ++...+.......+..+++
T Consensus       217 ---~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~-------------~g-~~~~~~~~l~~~~i~~iig  279 (460)
T PRK11462        217 ---MREDLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWI-------------LG-TPEVFVAFLTTYCVGNLIG  279 (460)
T ss_pred             ---HHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhh-------------cC-ChHHHHHHHHHHHHHHHHH
Confidence               001444555565555444333333332222222222222221             12 2223345566777888999


Q ss_pred             HHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhh-hc-hhHHHHHHHHHHHHhhhhhhhhHhhhcccccc-------ccch
Q 011416          346 LLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT-YQ-SNILTTGLLFGARMCVMGAFTVSLIYAAEIYP-------TSVR  416 (486)
Q Consensus       346 ~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~  416 (486)
                      .++++++.||+++|+....+..+..+..+++.+ .. +.+...+..++.+++.+...+..+++..|..+       .+..
T Consensus       280 ~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~  359 (460)
T PRK11462        280 SALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLT  359 (460)
T ss_pred             HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCch
Confidence            999999999999998876554443332333322 22 22233444455566666666666777776654       3444


Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011416          417 STGAGAANAMGRIGGMVCPLVAVALVANCHQ  447 (486)
Q Consensus       417 ~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~  447 (486)
                      |..++.......+|..+++.+.|.+.+..|+
T Consensus       360 g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy  390 (460)
T PRK11462        360 GISFAGTLFVLKLGLAFGGALIGWMLAYGGY  390 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            6666777788999999999999999987665

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.87  E-value=3.5e-19  Score=158.79  Aligned_cols=350  Identities=15%  Similarity=0.095  Sum_probs=243.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHhhhhhhhcchHH-HHHHHHHHHHhhhhhhcCCC--HHH-HHHHHHHHHhccCcc-hhhh
Q 011416           60 TEESLITTSVFAGLVVGAYAWGLVADNYGRRMG-FLGEALVTAGAGLLSSFSPN--YIT-LITLRCLVGVGLGSG-HVFL  134 (486)
Q Consensus        60 ~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~-~~~~~~~~~~~~~~~~~a~~--~~~-l~~~r~l~G~~~~~~-~~~~  134 (486)
                      +..|...++..+..++.+|+.|.++|+.|+||. +-....+..+++.+..++++  ++. .++...+..++.... ....
T Consensus        58 a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyd  137 (438)
T COG2270          58 AYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYD  137 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehh
Confidence            445888899999999999999999999997654 55566666667777777765  444 445566777777766 4455


Q ss_pred             hhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHH---Hh---------------cCCCcHHHHHHhHHHHHHHHH-Hh
Q 011416          135 SWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWI---IM---------------PRLDWRWLLGLSSIPSFILLA-FL  195 (486)
Q Consensus       135 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~---l~---------------~~~~w~~~f~~~~~~~~~~~~-~~  195 (486)
                      +++.+..++++-++..++-.....+|+.+.-+..-.   ..               +...-|..+.+.++..++..+ .+
T Consensus       138 s~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~  217 (438)
T COG2270         138 SMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMI  217 (438)
T ss_pred             hHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHH
Confidence            899999999999998888888888887776554311   11               233467788888777777644 45


Q ss_pred             hccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCCCCcccCCCchhhhHh
Q 011416          196 GFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLM  275 (486)
Q Consensus       196 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (486)
                      +..++.++..  ...+...++..+++.+                                                .+++
T Consensus       218 ~~v~~~~~~~--~~~~~~l~~g~k~L~~------------------------------------------------t~k~  247 (438)
T COG2270         218 LNVHDAEKIS--SPPPTALRNGFKELKS------------------------------------------------TFKE  247 (438)
T ss_pred             hccccccccc--ccchHHHHHHHHHHHH------------------------------------------------HHHH
Confidence            5555544310  0111112222222221                                                4555


Q ss_pred             hhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHH
Q 011416          276 LFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDT  355 (486)
Q Consensus       276 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr  355 (486)
                      +++++....++...+.+.-   ...+...+...+.          ...+|.+..+..+.....++..++|+++.|++.||
T Consensus       248 i~~~~~i~~FLiA~~~~~D---Gv~til~~~~~fg----------~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~r  314 (438)
T COG2270         248 IRGRKNLVLFLIARFFYID---GVNTILAMGGVFG----------AADLGLSSTELLLIGIALSVVAALGAIIAGFLDER  314 (438)
T ss_pred             HhcccchHHHHHHHHHHHh---hHHHHHHHHHHHH----------HHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555544444444333321   1112222222222          12458999999999999999999999999999999


Q ss_pred             hchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHH
Q 011416          356 AGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCP  435 (486)
Q Consensus       356 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~  435 (486)
                      +|.|+++.++.++..+..+...+.......+++.++.|.+.++.++..-++..+.+|+++.++.+|+++..+...+.++|
T Consensus       315 fg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp  394 (438)
T COG2270         315 FGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGP  394 (438)
T ss_pred             hCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHH
Confidence            99999999998888887777776666667778888899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccchHHHHHHHHHHHHHHHHhcccccc
Q 011416          436 LVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFET  472 (486)
Q Consensus       436 ~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (486)
                      ++.+.+.+.+|....-+....+.+......+...|..
T Consensus       395 ~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~~  431 (438)
T COG2270         395 FLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKVP  431 (438)
T ss_pred             HHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecCC
Confidence            9999999988865444433333333333333333333

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.85  E-value=5.4e-18  Score=156.35  Aligned_cols=333  Identities=17%  Similarity=0.094  Sum_probs=240.0

Q ss_pred             hchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhcc-hHHHHHHHHHHHHhhhhhhcCCC------HHHH
Q 011416           48 GPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVAD----NYGR-RMGFLGEALVTAGAGLLSSFSPN------YITL  116 (486)
Q Consensus        48 ~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d----r~G~-r~~~~~~~~~~~~~~~~~~~a~~------~~~l  116 (486)
                      +-.+.+.+|++...+|.+..+.-+--++.-|+.|.+.|    |+|| |+.++++.+..++.+.++..+++      ....
T Consensus        36 l~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya  115 (467)
T COG2211          36 LFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYA  115 (467)
T ss_pred             HHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHH
Confidence            34567789999999999999999999999999999999    4777 55677788999999888888774      4456


Q ss_pred             HHHHHHHHhccCcc-hhhhhhhcccc-CCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCCcHHHHHHhHHH
Q 011416          117 ITLRCLVGVGLGSG-HVFLSWFLEFV-PPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMP-------RLDWRWLLGLSSIP  187 (486)
Q Consensus       117 ~~~r~l~G~~~~~~-~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~-------~~~w~~~f~~~~~~  187 (486)
                      ++.-.+.+++.... .+-.++..|.. +++||.+..++-+.+.++|..+...+...+..       ..||+..-.+.+++
T Consensus       116 ~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi  195 (467)
T COG2211         116 LVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVI  195 (467)
T ss_pred             HHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHH
Confidence            67778888888887 55557777776 46899999999999999997777666655542       34788888787777


Q ss_pred             HHHHHHHh-hccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCCCCcccC
Q 011416          188 SFILLAFL-GFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEG  266 (486)
Q Consensus       188 ~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (486)
                      +.+..+.. +-.+|.+...  +..+++.                                                   .
T Consensus       196 ~~i~~l~~~~~v~ER~~~~--~~~~~~~---------------------------------------------------~  222 (467)
T COG2211         196 GVILLLFCFFNVKERVVET--QPTKTGV---------------------------------------------------K  222 (467)
T ss_pred             HHHHHHHHHHHhhcccCcc--ccCcccc---------------------------------------------------c
Confidence            77765543 3345543200  0000000                                                   0


Q ss_pred             CCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHH-HHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHH
Q 011416          267 KSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAV-VLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPG  345 (486)
Q Consensus       267 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  345 (486)
                      ......+..+++++.++..++..++.++..-...+. .+|..              ...+.++............+.+++
T Consensus       223 ~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~--------------y~lg~~~l~~~~~~~~~~~~~l~~  288 (467)
T COG2211         223 LKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVT--------------YVLGDPELFAYLLLLASGAGLLIG  288 (467)
T ss_pred             ccHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEE--------------EEcCChHHHHHHHHHHHHHHHHHH
Confidence            000013344556655554444333333222222222 22222              223666777777777878888888


Q ss_pred             HHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhc--hhHHHHHHHHHHHHhhhhhhhhHhhhccccc-------cccch
Q 011416          346 LLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQ--SNILTTGLLFGARMCVMGAFTVSLIYAAEIY-------PTSVR  416 (486)
Q Consensus       346 ~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~  416 (486)
                      .++..++++|+|+|++..++.++.+++.+++.+.+  +.+..++..++.+++.+...+..+++++|..       ..+..
T Consensus       289 ~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~e  368 (467)
T COG2211         289 LILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRRE  368 (467)
T ss_pred             HHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCch
Confidence            99999999999999999999999999888887744  4556666668888999999999999999875       34556


Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011416          417 STGAGAANAMGRIGGMVCPLVAVALVANCHQ  447 (486)
Q Consensus       417 ~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~  447 (486)
                      |..+|....+..+|.+++..+.|++.+..|+
T Consensus       369 Gi~~s~~tF~~K~g~ala~~~~g~~L~~~Gy  399 (467)
T COG2211         369 GIVYSGMTFFRKLGLALAGFIPGWILGAIGY  399 (467)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            8899999999999999999999999998774

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.84  E-value=7e-20  Score=169.04  Aligned_cols=391  Identities=15%  Similarity=0.087  Sum_probs=251.7

Q ss_pred             hcCCCchHHHHHHHHHHHHHHHHhhHhhhhchhchhhhh--cCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcc-hHH
Q 011416           16 HVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSE--WNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGR-RMG   92 (486)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~-r~~   92 (486)
                      ....++.+|+.+.+..+..++.......+.+..-++.++  .+.+.+..|++.++..++.+++++..|....|.+. |+.
T Consensus        25 ~~~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~P  104 (488)
T KOG2325|consen   25 PLDERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKP  104 (488)
T ss_pred             cccccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccC
Confidence            334567889999999999999999888888777777776  67778889999999999999999999999999987 889


Q ss_pred             HHHHHHHHHHhhhhh-hcC---C-CHHHHHHHHHHHHhccCcchhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHH
Q 011416           93 FLGEALVTAGAGLLS-SFS---P-NYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIG  167 (486)
Q Consensus        93 ~~~~~~~~~~~~~~~-~~a---~-~~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l  167 (486)
                      ++.+.++..++.++. +++   + +.+.++++|++.|+|.|......+|+++....++|.++++....+..+|.++||.+
T Consensus       105 li~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~  184 (488)
T KOG2325|consen  105 LIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTI  184 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHH
Confidence            999999999999988 332   3 67889999999999999888899999999999999999999999999999999998


Q ss_pred             HHHHhcC--CC-----------cHHHHHHhHHHHHHHH-HHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCch
Q 011416          168 AWIIMPR--LD-----------WRWLLGLSSIPSFILL-AFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGK  233 (486)
Q Consensus       168 ~~~l~~~--~~-----------w~~~f~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (486)
                      +..+..-  .|           +..+-|+.+++.++.+ ++.++++|.++....++..++ +       +.+.       
T Consensus       185 q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~-~-------~~~~-------  249 (488)
T KOG2325|consen  185 QLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSV-E-------EEKS-------  249 (488)
T ss_pred             HHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccc-h-------hhcc-------
Confidence            8776421  11           3456677778777754 445666776542211111000 0       0000       


Q ss_pred             hhhccccCCCCCCCCccchhhcccCCCCCcccCCCchhhhHhhhc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 011416          234 LVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFS-SKLARTTILLWLLLFGNSFAYYAVVLLISELSSL  312 (486)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (486)
                                                            ...+... +..+...+++++..+...+.+.......+.+.  
T Consensus       250 --------------------------------------~~~~~~~~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~--  289 (488)
T KOG2325|consen  250 --------------------------------------DIEKVKKPKLDWVAVLVCIFLRFVVNFIATTIETLSSALT--  289 (488)
T ss_pred             --------------------------------------chhhhccCChhHHHHHHHHHHHHHHHHHHHHHHhccchHH--
Confidence                                                  0000000 12223344444555555454444333222211  


Q ss_pred             cccCCCCccccCCCCCchhHHH----HHHHHhhHHHHHHHHHHHH-HHhchhHHHHHHHHHHHHHHHHHhh----hc---
Q 011416          313 DTRCRSPLMFSHHPQDANLYID----EFITSLAEIPGLLLAAILV-DTAGRKLSITIMFTLSCLFLLPLVT----YQ---  380 (486)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~g~l~-dr~g~~~~~~~~~~~~~~~~~~~~~----~~---  380 (486)
                              +..++.+.+++...    .+..++..+.-.+...... .++.+|..+..+.+....+..+...    ..   
T Consensus       290 --------m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~~~~g~l~~f~~~~i~~yp~~~~s~pv  361 (488)
T KOG2325|consen  290 --------MVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKRRIILLGFLIFFLSYYIFTYPWGFYSGPV  361 (488)
T ss_pred             --------HHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccceeeeehHHHHHHhhheeeeecccccccc
Confidence                    11123333333222    2222222222222222222 2323344444443333333332221    00   


Q ss_pred             ---h---------------------hHH-HHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHH
Q 011416          381 ---S---------------------NIL-TTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCP  435 (486)
Q Consensus       381 ---~---------------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~  435 (486)
                         +                     .+. .....++.|.+.........+.-+|...+++++++.|+.......+..++|
T Consensus       362 ~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~  441 (488)
T KOG2325|consen  362 QPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGP  441 (488)
T ss_pred             ccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhH
Confidence               0                     000 111223334444444556788889999999999999999999999999999


Q ss_pred             HHHHHHHHhhccchHHHHHHHHHHHHHHHHhccc
Q 011416          436 LVAVALVANCHQMTAVVLLVVVIVTSILSVMLIP  469 (486)
Q Consensus       436 ~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  469 (486)
                      .+........|....+.+.++..++...+.....
T Consensus       442 ~~~t~~~~~~g~~~v~~~~~~~~l~~~~l~~~~~  475 (488)
T KOG2325|consen  442 IFSTAIFTLSGPRPVWIILLCLLLVVAALWIVFL  475 (488)
T ss_pred             HHHhhhHHhcCccHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999988777776666666555554443

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.81  E-value=3.7e-17  Score=149.41  Aligned_cols=413  Identities=15%  Similarity=0.027  Sum_probs=254.3

Q ss_pred             HHHHHHHHHHHHHhhHhhhh-chhchhhhhcC----CCcchhHHHHHHHHHHHHHHHHHHhhhhhhh-cchHHHHHHHHH
Q 011416           26 VLAYAGLGWVAEAMEIMILS-FVGPTVKSEWN----LSSTEESLITTSVFAGLVVGAYAWGLVADNY-GRRMGFLGEALV   99 (486)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-G~r~~~~~~~~~   99 (486)
                      .+..++..-+-..++.+-+. .+.-++..+++    .|+++..-+.++|..-.-+..+++|+++||+ |+|+++.+|.++
T Consensus        22 ~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail  101 (498)
T COG3104          22 GLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAIL  101 (498)
T ss_pred             hHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence            34444455555544444333 33334445555    9999998888888888888899999999996 999999999999


Q ss_pred             HHHhhhhhhcCC--CHHHHHHHHHHHHhccCcc-hhhhhhhccccCCC--chhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 011416          100 TAGAGLLSSFSP--NYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPS--NRGMWMVIFSSFWTIGSVSEAIGAWIIMPR  174 (486)
Q Consensus       100 ~~~~~~~~~~a~--~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~  174 (486)
                      ..+|.++.+.+.  +...+.++-.+.++|.|.. +...+++.|.+|++  +|-..++++..+.++|+.++|.+.+++.++
T Consensus       102 ~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~  181 (498)
T COG3104         102 MAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAIN  181 (498)
T ss_pred             HHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHh
Confidence            999999999984  7889999999999999999 88889999999764  477789999999999999999999999999


Q ss_pred             CCcHHHHHHhHHHHHHHHHHhhccCCCchhhhh-----cCChHHHHHHHHH----HHHhc-CCCCCCchhhhccccCCCC
Q 011416          175 LDWRWLLGLSSIPSFILLAFLGFQPESPRYLCL-----KGRTAEAHRALEK----IAQVN-KTKLPNGKLVARRSTLPTG  244 (486)
Q Consensus       175 ~~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~-----~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~  244 (486)
                      +||...|...++-..+.++.+...+..-.....     ..+..+.......    .-... ......+....        
T Consensus       182 ~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------  253 (498)
T COG3104         182 YGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSG--------  253 (498)
T ss_pred             hCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence            999999998877666655554443321100000     0011111100000    00000 00000000000        


Q ss_pred             CCCCccchhhcccCCCCCcccCCCchhhhHhhhc-h---hhHHHHHHHHHHHHHHHHHHH--------HHHHHHhhhccc
Q 011416          245 ERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFS-S---KLARTTILLWLLLFGNSFAYY--------AVVLLISELSSL  312 (486)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~---~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~  312 (486)
                           ........          .......+.++ +   ..+++.+..+.++. ....+|        ....+.....+.
T Consensus       254 -----~~~~~~i~----------~~~~~~~~~~~~~~~~~er~r~~~~~~Lfl-~~~iFW~~~~Q~~ssl~~~a~~~v~~  317 (498)
T COG3104         254 -----VLLVISIL----------IAIIYFAEAFRSPKVFDERRRLLAAIPLFL-FAVIFWALYEQMGSSLNLYADRNVNR  317 (498)
T ss_pred             -----HHHHHHHH----------HHHHHHHHHhccCccHHHHHHHHHHHHHHH-HHHHHHHHHHhccchHHHHHHHhhcc
Confidence                 00000000          00000000000 0   11122222222111 111111        112222221100


Q ss_pred             cccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchh-------HHHHHHHHHHHHHHHHHhhh------
Q 011416          313 DTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRK-------LSITIMFTLSCLFLLPLVTY------  379 (486)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~-------~~~~~~~~~~~~~~~~~~~~------  379 (486)
                               +..| -+....+..++..+.-++.+++..++..|.+++       .-...+..+++.+++++...      
T Consensus       318 ---------~~~g-~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~  387 (498)
T COG3104         318 ---------QIFG-FEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGG  387 (498)
T ss_pred             ---------cccc-eecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence                     0122 233456677777788888888888888875433       23456666666666655442      


Q ss_pred             ----chhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHH------HHHhhccch
Q 011416          380 ----QSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVA------LVANCHQMT  449 (486)
Q Consensus       380 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~------l~~~~g~~~  449 (486)
                          .+.++.+...++.+++.-...|+..+++.+..|+...+..+++.......++.++..+.+.      ..+......
T Consensus       388 ~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~  467 (498)
T COG3104         388 PSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGR  467 (498)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhh
Confidence                2456777888889999999999999999999999999999998888877777777776662      344445566


Q ss_pred             HHHHHHHHHHHHHHHHhcccccc
Q 011416          450 AVVLLVVVIVTSILSVMLIPFET  472 (486)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~~~  472 (486)
                      .|..++...++..+......|+.
T Consensus       468 ~F~~~g~v~i~~~~~~~~~~~~~  490 (498)
T COG3104         468 VFGTIGVVAIVIGILLLLLSPKL  490 (498)
T ss_pred             hHHHHHHHHHHHHHHHHHhhHHH
Confidence            67777777766666655554433

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.80  E-value=5.8e-16  Score=138.94  Aligned_cols=329  Identities=15%  Similarity=0.096  Sum_probs=230.5

Q ss_pred             hhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhc-----chHHHHH-HHHHHHHhhhhhhcC-----C-------
Q 011416           50 TVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYG-----RRMGFLG-EALVTAGAGLLSSFS-----P-------  111 (486)
Q Consensus        50 ~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G-----~r~~~~~-~~~~~~~~~~~~~~a-----~-------  111 (486)
                      .+..|++++..-.+.+.+..++... ..+.+|+.+|+.+     ||..+++ |.++...+..+..++     .       
T Consensus         5 VMIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~   83 (403)
T PF03209_consen    5 VMIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSG   83 (403)
T ss_pred             hHHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccc
Confidence            3567899999999999999988776 5899999999999     8766555 566655555544432     2       


Q ss_pred             CH--H--HHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHhH-
Q 011416          112 NY--I--TLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSS-  185 (486)
Q Consensus       112 ~~--~--~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~f~~~~-  185 (486)
                      +.  +  ...+...+.|+|.+.. .+..++++|..|+++|+++.++.....-+|.+++..+.+.+.+.++-.-...+.. 
T Consensus        84 ~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~  163 (403)
T PF03209_consen   84 PFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQG  163 (403)
T ss_pred             ccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHH
Confidence            22  2  2344566788888887 7777999999999999999999999999999999999998888776433333222 


Q ss_pred             --HHHHHHHHHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCCCCc
Q 011416          186 --IPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKT  263 (486)
Q Consensus       186 --~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (486)
                        ++.++..++..+-.|++.....+                                                    .++
T Consensus       164 ~a~i~~~l~~ia~wg~E~r~~~~~~----------------------------------------------------~~~  191 (403)
T PF03209_consen  164 VALIALLLNLIALWGQEPRRSRRAA----------------------------------------------------AAE  191 (403)
T ss_pred             HHHHHHHHHHHHHHhcccCCccccc----------------------------------------------------CCC
Confidence              22222222222222322100000                                                    000


Q ss_pred             ccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHH
Q 011416          264 TEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEI  343 (486)
Q Consensus       264 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  343 (486)
                      +++.+....+++++.++..+++....+..   .+.++..-..+..          +--+.+|++..+...+....+.+.+
T Consensus       192 ~~~~~f~~a~~~~~~~~~a~~f~~fl~l~---t~a~~~QD~iLEP----------ygg~Vfgmsv~eTT~Lta~~~~G~L  258 (403)
T PF03209_consen  192 RPRPPFREAWRQVWASPQARRFFVFLFLG---TLAFFMQDVILEP----------YGGEVFGMSVGETTRLTAFWGGGTL  258 (403)
T ss_pred             CCCccHHHHHHHHHhCCChhHHHHHHHHH---HHHHHhhHHHcCC----------chhHHcCCCHHHHHHHHHHHHHHHH
Confidence            11111122556666555555544433332   2222222222222          2235678999999999999999999


Q ss_pred             HHHHHHHHHHH-HhchhHHHHHHHHHHHHHHHHHhh---hchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhH
Q 011416          344 PGLLLAAILVD-TAGRKLSITIMFTLSCLFLLPLVT---YQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTG  419 (486)
Q Consensus       344 ~~~~~~g~l~d-r~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (486)
                      +|....|++.. |.++++...++....++++..+..   ..+.+.+....+++|++.+.......+...+..++++.|..
T Consensus       259 ~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~  338 (403)
T PF03209_consen  259 LGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLF  338 (403)
T ss_pred             HHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHH
Confidence            99999998877 577777777787777777666554   55677888888999999999988899999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHh
Q 011416          420 AGAANAMGRIGGMVCPLVAVALVAN  444 (486)
Q Consensus       420 ~g~~~~~~~~g~~~~~~i~g~l~~~  444 (486)
                      +|.-...+.+...++.++.|.+.|.
T Consensus       339 mG~WGaaQA~A~Glg~~~GG~~~D~  363 (403)
T PF03209_consen  339 MGAWGAAQAIARGLGTFLGGALRDL  363 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999988875

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.73  E-value=6.9e-15  Score=138.39  Aligned_cols=361  Identities=16%  Similarity=0.113  Sum_probs=242.6

Q ss_pred             HHHHHHHHHHHHHhhHhhhhchhchhhhhcCCCcc-hhHHHHHH----HHHHHHHHHHHHhhhhhhhcchHHHHHHHHHH
Q 011416           26 VLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSST-EESLITTS----VFAGLVVGAYAWGLVADNYGRRMGFLGEALVT  100 (486)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~g~~~s~----~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~  100 (486)
                      ......+-.+..++.........+.....++.+.. ..+.....    ..+...+.++..|.++||+|||..+....+..
T Consensus        23 ~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~  102 (463)
T KOG2816|consen   23 LEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLFGT  102 (463)
T ss_pred             HHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHH
Confidence            33444444444444444444555555555544332 22333333    36788899999999999999999999999998


Q ss_pred             HHhhhhhhcCCCHHHHHHHHHHHHhccCcc---hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 011416          101 AGAGLLSSFSPNYITLITLRCLVGVGLGSG---HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDW  177 (486)
Q Consensus       101 ~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~---~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w  177 (486)
                      .+..++..+.. +|.++    +.|+..+..   ....++++|....++|....|+.......+..++|.+++.+.+..|.
T Consensus       103 ~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~  177 (463)
T KOG2816|consen  103 ILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGI  177 (463)
T ss_pred             HHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCc
Confidence            88888777765 33333    666655443   45668999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhHHHHHHHH-HHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcc
Q 011416          178 RWLLGLSSIPSFILL-AFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLS  256 (486)
Q Consensus       178 ~~~f~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (486)
                      -.+|.+..+..++.. ...+++||+-...   ++.++   .   .++....+..                          
T Consensus       178 a~~f~ia~~~~~~~~~y~~~~l~Esl~~~---~~~~~---~---~~~~~~~~~~--------------------------  222 (463)
T KOG2816|consen  178 ALVFLIAAASGILSLLYMLLFLPESLQEK---ERSDA---T---LRELTPGSLD--------------------------  222 (463)
T ss_pred             hHHHHHHHHHHHHHHHHHhhccccccCcc---ccccc---c---ccccCCCccc--------------------------
Confidence            999999888887764 4567788874311   11100   0   0000000000                          


Q ss_pred             cCCCCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHH
Q 011416          257 SNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEF  336 (486)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (486)
                               .......++...+.+..+..+.++...+.......         .........+....++++..+.+.+.+
T Consensus       223 ---------~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~---------~~~~~~~~~yl~~~f~w~~~~~s~~~~  284 (463)
T KOG2816|consen  223 ---------SSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEA---------GGASDVLLLYLKAKFGWNKKEFSDLLS  284 (463)
T ss_pred             ---------chhhhhhhhhhcccCCCccchHHHHHHHHHHHHHh---------cCceeEEEEEEeeecCcCHHHHHHHHH
Confidence                     00000011111112222222222222221111111         111000011345667899999998888


Q ss_pred             HHHhhHHHHHHHHH-HHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccc
Q 011416          337 ITSLAEIPGLLLAA-ILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV  415 (486)
Q Consensus       337 ~~~i~~~~~~~~~g-~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (486)
                      ..++.+.++..+.. .+...++.|+.+..|+....+......+.++.|..+....+. .......|...+..+...++++
T Consensus       285 ~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~-~~~~~~~pa~~s~~s~~v~~~e  363 (463)
T KOG2816|consen  285 LVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVV-ALAGIVFPAIRAFASILVSPEE  363 (463)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHH-HhhcchhHHHHhHHHhhccccc
Confidence            88999999888776 777778999999999999999999999988887776665554 4457778999999999999999


Q ss_pred             hhhHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011416          416 RSTGAGAANAMGRIGGMVCPLVAVALVANC  445 (486)
Q Consensus       416 ~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~  445 (486)
                      +|.++++...+..+.+.++|.+.+.++..+
T Consensus       364 ~g~v~~~is~i~~l~~~~~~~~~~~i~~~t  393 (463)
T KOG2816|consen  364 QGKVFGIISGIEGLSGVVSPALYGNIFALT  393 (463)
T ss_pred             ccchhhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            999999999999999999999999887543

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.73  E-value=2.2e-16  Score=153.98  Aligned_cols=183  Identities=14%  Similarity=0.012  Sum_probs=137.3

Q ss_pred             hHhhhhchhchhh-hhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhh---hhhcCCCHHH
Q 011416           40 EIMILSFVGPTVK-SEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGL---LSSFSPNYIT  115 (486)
Q Consensus        40 ~~~~~~~~~~~~~-~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~---~~~~a~~~~~  115 (486)
                      .........|.+. +++|.+..+.++..+...++..++.++.|+++||+|||+++..+.++..++..   ....+++...
T Consensus       265 ~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (490)
T PRK10642        265 TYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGL  344 (490)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence            3334444556654 66899888888888889999999999999999999999998887765443322   2223456788


Q ss_pred             HHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CcHHHHHHhHHHHHHHHH
Q 011416          116 LITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRL-DWRWLLGLSSIPSFILLA  193 (486)
Q Consensus       116 l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~-~w~~~f~~~~~~~~~~~~  193 (486)
                      +++++++.|++.+.. .....++.|.+|++.|++++|+......++..++|.+.+.+.+.. +|+.++++..+++++.++
T Consensus       345 ~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~  424 (490)
T PRK10642        345 IFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLI  424 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence            888999998876655 455567789999999999999755555666778888888877654 578777777777777666


Q ss_pred             HhhccCCCchhhhhc-----CChHHHHHHHHHHH
Q 011416          194 FLGFQPESPRYLCLK-----GRTAEAHRALEKIA  222 (486)
Q Consensus       194 ~~~~~~e~~~~~~~~-----~~~~~~~~~~~~~~  222 (486)
                      ..+++||+|++..++     ++.+|+++.+++++
T Consensus       425 ~~~~~pes~~~~~~~~~~~~~~~~~a~~~l~~~~  458 (490)
T PRK10642        425 TGVTMKETANRPLKGATPAASDIQEAKEILVEHY  458 (490)
T ss_pred             HHHHhccccCCCCCCccccccchhhHHHHhhccc
Confidence            667789999887654     67777777777664

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.72  E-value=5.4e-19  Score=170.42  Aligned_cols=376  Identities=16%  Similarity=0.100  Sum_probs=3.0

Q ss_pred             HHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhc
Q 011416           30 AGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSF  109 (486)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~  109 (486)
                      +++..++...........+..++++|++++++.|++.+.+-++..+..++..++.+|..|-|++-.|.+++++|++++++
T Consensus         8 ~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~l   87 (539)
T PF03137_consen    8 LCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFAL   87 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhc
Confidence            34444555666777778889999999999999999999999999999999999999988888999999999999988765


Q ss_pred             CC--------------------------------------------------CHHHHHHHHHHHHhccCcc-hhhhhhhc
Q 011416          110 SP--------------------------------------------------NYITLITLRCLVGVGLGSG-HVFLSWFL  138 (486)
Q Consensus       110 a~--------------------------------------------------~~~~l~~~r~l~G~~~~~~-~~~~~~i~  138 (486)
                      -+                                                  -++.++++.++.|+|.... +...+|+-
T Consensus        88 Phf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiD  167 (539)
T PF03137_consen   88 PHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYID  167 (539)
T ss_dssp             ----------------------------------------------------------------SSS-------------
T ss_pred             cHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeec
Confidence            10                                                  0345788999999999988 88899999


Q ss_pred             cccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCC----------------------CcHHHHHHhHHHHHHHHHHhh
Q 011416          139 EFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRL----------------------DWRWLLGLSSIPSFILLAFLG  196 (486)
Q Consensus       139 ~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~----------------------~w~~~f~~~~~~~~~~~~~~~  196 (486)
                      |..++++-+..+|+..+...+|.++|.++++.+.+.+                      .|..-|++.+++.++..+..+
T Consensus       168 Dnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~  247 (539)
T PF03137_consen  168 DNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLF  247 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998765311                      165666666777666666677


Q ss_pred             ccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCCCCcccCCCchhhhHhh
Q 011416          197 FQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLML  276 (486)
Q Consensus       197 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  276 (486)
                      ++|++-+...  +..++.+.  ++.+..+..+                ++.+.+.      ........-+..+...+.+
T Consensus       248 ~FPk~lp~~~--~~~~~~~~--~~~~~~~~~~----------------~~~~~~~------~~~~~~~~~~df~~~l~~L  301 (539)
T PF03137_consen  248 FFPKKLPGTS--ERQEEKES--SERKEEDSDK----------------DSFKDPK------SKKSFGKSIKDFPKALKRL  301 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCCccCCCcc--cccchhhh--hhcchhhhhh----------------hcccccc------cccchhhhhhhHHHHHHHH
Confidence            7776533210  00000000  0000000000                0000000      0000000111122233444


Q ss_pred             hchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHh-hHHHHHHHHHHHHHH
Q 011416          277 FSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSL-AEIPGLLLAAILVDT  355 (486)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~g~l~dr  355 (486)
                      ++++.   +....+..........++..+.|.+.          ..+++.++..+.++.....+ +.++|.+++|++.+|
T Consensus       302 l~Np~---f~~~~la~~~~~~~~~G~~tF~pKyl----------E~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk  368 (539)
T PF03137_consen  302 LTNPV---FMCLILAGVFESFIVSGFATFLPKYL----------ESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKK  368 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hcChH---HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEE
Confidence            44432   33333334445555566666777655          34567888888877755554 567888999999999


Q ss_pred             hc--hhHHHHHHHHHHHHHHHH---Hhh-------------hc-------------------------------------
Q 011416          356 AG--RKLSITIMFTLSCLFLLP---LVT-------------YQ-------------------------------------  380 (486)
Q Consensus       356 ~g--~~~~~~~~~~~~~~~~~~---~~~-------------~~-------------------------------------  380 (486)
                      ++  .|..+....+...+..+.   ..+             ..                                     
T Consensus       369 ~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~  448 (539)
T PF03137_consen  369 FKLSARGAAKFCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCC  448 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ecCcHHHHHHHHHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccc
Confidence            75  344443333333332222   111             00                                     


Q ss_pred             -hhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHHHH-HHHHHHHHHHHHHHHh
Q 011416          381 -SNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGR-IGGMVCPLVAVALVAN  444 (486)
Q Consensus       381 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~g~~~~~~i~g~l~~~  444 (486)
                       ....+.+..++..+..+..........-+.+|+++|+.+.|+...+.. +|.+-+|+++|.+.|.
T Consensus       449 ~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~  514 (539)
T PF03137_consen  449 NKLIPFLILLFILSFFTFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS  514 (539)
T ss_dssp             ------------------------------------------------------------------
T ss_pred             cccHHHHHHHHHHHHHHHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence             001122222333334444455566677788999999999999987765 7889999999999986

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.71  E-value=1.4e-15  Score=146.51  Aligned_cols=374  Identities=14%  Similarity=0.089  Sum_probs=257.6

Q ss_pred             HHHHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhh
Q 011416           26 VLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGL  105 (486)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~  105 (486)
                      .+.++++..+...+....+...+..+.+.|+++.++.|++.+.+-++..+...+..+..-|.-|-+++-+|+++++++++
T Consensus        98 fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsl  177 (735)
T KOG3626|consen   98 FLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSL  177 (735)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHH
Confidence            44555666777777778888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCC-------------------C--------------------------------HH-HHHHHHHHHHhccCcc-hh
Q 011416          106 LSSFSP-------------------N--------------------------------YI-TLITLRCLVGVGLGSG-HV  132 (486)
Q Consensus       106 ~~~~a~-------------------~--------------------------------~~-~l~~~r~l~G~~~~~~-~~  132 (486)
                      ++++-+                   +                                ++ .++++.++.|+|.... +.
T Consensus       178 l~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tl  257 (735)
T KOG3626|consen  178 LFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTL  257 (735)
T ss_pred             HHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccC
Confidence            887620                   0                                22 5678899999999988 88


Q ss_pred             hhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------------------CcHHHHHHhHHHHHHHHH
Q 011416          133 FLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRL-------------------DWRWLLGLSSIPSFILLA  193 (486)
Q Consensus       133 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~-------------------~w~~~f~~~~~~~~~~~~  193 (486)
                      ..+|+-|...+++-+..+|+..+...+|.++|.++++++...+                   -|..-|++.+.+.++..+
T Consensus       258 GisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~  337 (735)
T KOG3626|consen  258 GISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAV  337 (735)
T ss_pred             CCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999975421                   167777778888887777


Q ss_pred             HhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCCCCcccCCCchhhh
Q 011416          194 FLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLF  273 (486)
Q Consensus       194 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (486)
                      .++++|++.+....+   .+.+ ..+..+..++                ..+..            ....++-+..+...
T Consensus       338 p~f~fPk~lp~~~~~---~~~~-~~~~~k~~~~----------------~~~~~------------~~~~~~ikdfp~s~  385 (735)
T KOG3626|consen  338 PLFFFPKELPKSQKR---KRAR-DLHVLKTESG----------------GAKSD------------KTFGKKIKDFPKSI  385 (735)
T ss_pred             HHHhCcccCcccccc---chhh-hhcccccccc----------------cccCC------------cchhhhHHHHHHHH
Confidence            888888764321111   0000 0000000000                00000            00000111122244


Q ss_pred             HhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhh-HHHHHHHHHHH
Q 011416          274 LMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLA-EIPGLLLAAIL  352 (486)
Q Consensus       274 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~g~l  352 (486)
                      +.+++++.   +....+........+.+...|+|.+.          ..+++.++..+..+.....+. ..+|.+++|++
T Consensus       386 ~~ll~N~i---f~~~~l~~~~~~~~~~G~~tFlPKyL----------E~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~i  452 (735)
T KOG3626|consen  386 KRLLSNPI---FMLVVLASVIESLAITGYITFLPKYL----------ETQFGISASLANILTGSIGVPAAAVGIFLGGLI  452 (735)
T ss_pred             HHHhcCch---HHHHHHHHHHHHHHHhhHHHhhHHHH----------HHHcCCCHHHHHHHhhhhhhhhhhhhhhcccee
Confidence            45555443   34444455566677777778888776          345689988888887655554 45778899999


Q ss_pred             HHHhc--hhHHHHHHHHHHHHHHHH---Hhhh-----------------------c------------------------
Q 011416          353 VDTAG--RKLSITIMFTLSCLFLLP---LVTY-----------------------Q------------------------  380 (486)
Q Consensus       353 ~dr~g--~~~~~~~~~~~~~~~~~~---~~~~-----------------------~------------------------  380 (486)
                      ..|+.  .|.......+...+.++.   ..+.                       .                        
T Consensus       453 ikkfkl~~r~~a~~~~~~~~l~l~~~~~~~~igC~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~  532 (735)
T KOG3626|consen  453 IKKFKLSARGAAKFVIVCSVLSLLFYSLLFFIGCESSPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGEN  532 (735)
T ss_pred             eeeecccHHHHHHHHHHHHHHHHHHHHHHHEecCCCCcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCC
Confidence            99874  344443333333333222   2110                       0                        


Q ss_pred             ------------------h----------------------------------hHHHHHHHHHHHHhhhhhhhhHhhhcc
Q 011416          381 ------------------S----------------------------------NILTTGLLFGARMCVMGAFTVSLIYAA  408 (486)
Q Consensus       381 ------------------~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (486)
                                        +                                  ...+++.+++..+..+...+..+.++.
T Consensus       533 G~tY~SpChAGC~~~~~~~~~~~~ytnCsCv~~~~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~i~L  612 (735)
T KOG3626|consen  533 GITYFSPCHAGCTESSGTSDGNTIYTNCSCVPTNKNGNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPGMLIVL  612 (735)
T ss_pred             CCEEeChhhhCCcccccCCCCceeeccccccccccCCCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcceEEEE
Confidence                              0                                  011223333333444444567777888


Q ss_pred             ccccccchhhHhHHHHHHHH-HHHHHHHHHHHHHHHh
Q 011416          409 EIYPTSVRSTGAGAANAMGR-IGGMVCPLVAVALVAN  444 (486)
Q Consensus       409 ~~~~~~~~~~~~g~~~~~~~-~g~~~~~~i~g~l~~~  444 (486)
                      +.+++++|..++|+..++.. +|.+-+|+++|++.|.
T Consensus       613 R~V~~e~ks~AlG~~~~~irllg~IPsPIifG~~ID~  649 (735)
T KOG3626|consen  613 RCVPPEEKSFALGFQWMLIRLLGFIPSPIIFGAVIDT  649 (735)
T ss_pred             EccCchhchhhhHHHHHHHHHHhcCCchHhhhhhHhh
Confidence            99999999999999987765 8999999999999996

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=99.68  E-value=9.1e-14  Score=126.53  Aligned_cols=362  Identities=14%  Similarity=0.058  Sum_probs=229.9

Q ss_pred             hhhhchhchhhhh-cCCCcchhH-HHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcCCCHHHHHHH
Q 011416           42 MILSFVGPTVKSE-WNLSSTEES-LITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITL  119 (486)
Q Consensus        42 ~~~~~~~~~~~~~-~~~s~~~~g-~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a~~~~~l~~~  119 (486)
                      -.-+.+.|.+.+. .|+|..|+. -+.-...-.+....++...+.|..+.|++++++.+...+...+..+.++...+-+.
T Consensus        21 PsEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~  100 (412)
T PF01770_consen   21 PSEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLM  100 (412)
T ss_pred             CCCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHH
Confidence            3344555666665 799988874 56777778888899999999999999999999999999999999999999999999


Q ss_pred             HHHHHhccCcchhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHhHHHHHHHHHHhhc
Q 011416          120 RCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMP--RLDWRWLLGLSSIPSFILLAFLGF  197 (486)
Q Consensus       120 r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~--~~~w~~~f~~~~~~~~~~~~~~~~  197 (486)
                      .+..|++.+...+..+++-...|+++..++.+...++..+|..++..+|..+..  ..+++...++......+.++..++
T Consensus       101 q~~yg~~~a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~f  180 (412)
T PF01770_consen  101 QFFYGLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALF  180 (412)
T ss_pred             HHHHHHHHHHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999998878888999999999999999999999999999999999998876  445666666666555566677777


Q ss_pred             cCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCCCCcccCCCchhhh----
Q 011416          198 QPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLF----  273 (486)
Q Consensus       198 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  273 (486)
                      +|..++...-+++.++..+       .++   .+          .+...+..+..   ++..+.++.........+    
T Consensus       181 LP~~~~S~~f~r~~~~~~~-------~~~---~~----------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~l~  237 (412)
T PF01770_consen  181 LPMPKRSLFFHRKPPAEQD-------ANE---SE----------SDKMNESPESS---SSTEKSPSTESSSRKSVLRLLW  237 (412)
T ss_pred             cCCCCcccceeccCccccc-------ccc---cc----------ccccccccccc---cccccCcccccchHHHHHHHHH
Confidence            8876543222222111100       000   00          00000000000   000000011111111122    


Q ss_pred             HhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHH
Q 011416          274 LMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILV  353 (486)
Q Consensus       274 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~  353 (486)
                      +++++....+.++...+-+......++.+..+.+.+....        ...+.....-|..-....+.+.++.+..|++.
T Consensus       238 ~~~~~~y~~~~ll~WSlWWa~atcgy~qv~nYvQ~LW~~v--------~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~  309 (412)
T PF01770_consen  238 KDFKSCYSNPRLLLWSLWWAFATCGYYQVINYVQSLWDTV--------PPSDNESVYNGAVEAASTLLGAIAALLAGYVK  309 (412)
T ss_pred             HHHHHHhcCchHHHHHHHHHHHHhHHHHHHHHHHHHHHhc--------CCCCCCcccchHHHHHHHHHHHHHHHHHhHhh
Confidence            2222111112222222222233334444444444443211        11123333345666666777778888888886


Q ss_pred             HHhchhH--HHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHHHHHHH
Q 011416          354 DTAGRKL--SITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGG  431 (486)
Q Consensus       354 dr~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~  431 (486)
                      .++.+..  .+....++.+.+++++...++.|...+..++.+.......+....-++.....+.-|..+|+...+..+-.
T Consensus       310 ~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiNtf~Al~LQ  389 (412)
T PF01770_consen  310 VNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGINTFVALVLQ  389 (412)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeHHHHHHHHH
Confidence            5555533  33444555566666777788888888888888888888888888777777777777888888777665554


Q ss_pred             HHH
Q 011416          432 MVC  434 (486)
Q Consensus       432 ~~~  434 (486)
                      .+-
T Consensus       390 til  392 (412)
T PF01770_consen  390 TIL  392 (412)
T ss_pred             Hhe
Confidence            443

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.66  E-value=2.1e-14  Score=136.32  Aligned_cols=343  Identities=16%  Similarity=0.145  Sum_probs=215.0

Q ss_pred             hchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhh---c--chHHHHHHHHHHHHhhhhhhcC----CCHHH
Q 011416           45 SFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNY---G--RRMGFLGEALVTAGAGLLSSFS----PNYIT  115 (486)
Q Consensus        45 ~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~---G--~r~~~~~~~~~~~~~~~~~~~a----~~~~~  115 (486)
                      ....|.+.+++|+++++.....+...+...+ -++.|.++|-+   |  ||+-++++.++.+++.+.++..    .+...
T Consensus        10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~   88 (433)
T PF03092_consen   10 LAIYPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAI   88 (433)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhh
Confidence            3456788999999999999999998888876 58899999976   2  5555666777765555555443    35666


Q ss_pred             HHHHHHHHHhccCcc-hhhhhhhcccc--CCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHhHHHHHHHH
Q 011416          116 LITLRCLVGVGLGSG-HVFLSWFLEFV--PPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILL  192 (486)
Q Consensus       116 l~~~r~l~G~~~~~~-~~~~~~i~~~~--~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~f~~~~~~~~~~~  192 (486)
                      ..+.-++..+|.... ..+-+.+.|..  .|++||...+.......+|.+++..++|.+.+..++|..|.+.+++.++..
T Consensus        89 ~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~  168 (433)
T PF03092_consen   89 AVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLML  168 (433)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHH
Confidence            667778888888877 66668888877  344578888999999999999999999999999999999998887777665


Q ss_pred             HHhhccCCCchhhhhcCCh---HH-HHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCCCCcccCCC
Q 011416          193 AFLGFQPESPRYLCLKGRT---AE-AHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKS  268 (486)
Q Consensus       193 ~~~~~~~e~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (486)
                      +..+++.|+.+.....+..   ++ ........                                             +.
T Consensus       169 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------~~  203 (433)
T PF03092_consen  169 IVALFLLEERKVRPADEVFSFGKEEVPCLFGSF---------------------------------------------RE  203 (433)
T ss_pred             HHHHHhhhhccccccchhhcccccccchhhHHH---------------------------------------------HH
Confidence            5444443321100000000   00 00000000                                             00


Q ss_pred             chhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-cccCCCCccc---cCCCCCchhHHHHHHHHhhHHH
Q 011416          269 GLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSL-DTRCRSPLMF---SHHPQDANLYIDEFITSLAEIP  344 (486)
Q Consensus       269 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~  344 (486)
                      .....++.++.+........  .     ..++.   ..+..... ..+   ...+   .-++++...+....+..++.++
T Consensus       204 ~~~~l~~~~~~~~i~~~~~~--~-----~~~~~---~~~~~~~a~~fy---~~~~~~~gp~fs~~f~~~~~~vg~~~~l~  270 (433)
T PF03092_consen  204 QLSELWRALQQRAIWQPILF--F-----IFFFN---LPPSISSASSFY---FQTDALGGPHFSPSFYGTLSIVGSIASLL  270 (433)
T ss_pred             HHHHHHHHHhhhHHHHHHHH--H-----HHHHH---hccCCCCccEEE---EEeccccccccCHHHHHHHHHHHHHHHHH
Confidence            01122222222221111110  0     00000   00100000 000   0011   2237777777777777788888


Q ss_pred             HHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhh----------hchhHHHHHHHHHHHHhhhhhhhhHhhhcccccccc
Q 011416          345 GLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT----------YQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTS  414 (486)
Q Consensus       345 ~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (486)
                      |..+..+...+..-|+++....++.++..+.-..          .++.+....-..+..+.....+-+...+.+|+.|+.
T Consensus       271 g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G  350 (433)
T PF03092_consen  271 GILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVIGMIAFMPSLVLAARLCPKG  350 (433)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence            8888877777777788877766666554433211          011122233334444444555566777889999999


Q ss_pred             chhhHhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011416          415 VRSTGAGAANAMGRIGGMVCPLVAVALVANCH  446 (486)
Q Consensus       415 ~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g  446 (486)
                      .-|+.+++..++.++|..++..+...+.+..+
T Consensus       351 ~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~  382 (433)
T PF03092_consen  351 SEGTVYALLASFSNLGSSVSSTLGAFLMELFG  382 (433)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999888766

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.64  E-value=1.3e-15  Score=122.08  Aligned_cols=135  Identities=20%  Similarity=0.256  Sum_probs=119.4

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCC
Q 011416           66 TTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPS  144 (486)
Q Consensus        66 ~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~  144 (486)
                      .+.+.++..+++++.|++.||+|||+.+..+..+..++.+...++++++.+.+.+++.|++.+.. +...+++.|.+|++
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   83 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE   83 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence            44567888999999999999999999999999999999998888999999999999999998887 67778899999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHhHHHHHHHHHH-hhccCC
Q 011416          145 NRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAF-LGFQPE  200 (486)
Q Consensus       145 ~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~-~~~~~e  200 (486)
                      +|++..++.+....+|..+++.+.+.+.+..+|++.+++.++..++..+. .+..||
T Consensus        84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        84 ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            99999999999999999999999999999899999999888777766544 333443

>TIGR00889 2A0110 nucleoside transporter

Probab=99.63  E-value=4.2e-15  Score=141.60  Aligned_cols=157  Identities=15%  Similarity=0.074  Sum_probs=128.8

Q ss_pred             chhchhhhhcCCCc--------chhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcCC----CH
Q 011416           46 FVGPTVKSEWNLSS--------TEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSP----NY  113 (486)
Q Consensus        46 ~~~~~~~~~~~~s~--------~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a~----~~  113 (486)
                      ...+.+.++.|.++        ++.+.+.++..++..++.++.|+++||+|+|+++..+.++.+++..+.....    ++
T Consensus       229 ~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~  308 (418)
T TIGR00889       229 IFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGY  308 (418)
T ss_pred             HhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence            44455556666443        5679999999999999999999999999999999999999988877666632    24


Q ss_pred             HHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHH-HHHHHHHHHHHHHHHHHhcC------CCcHHHHHHhH
Q 011416          114 ITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFS-SFWTIGSVSEAIGAWIIMPR------LDWRWLLGLSS  185 (486)
Q Consensus       114 ~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~i~~~l~~~l~~~------~~w~~~f~~~~  185 (486)
                      +.+++.+++.|++.+.. +....++.|++|+++|+++.|+.+ ...++|.++||++++.+.++      +||+..|.+.+
T Consensus       309 ~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~  388 (418)
T TIGR00889       309 ALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFA  388 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHH
Confidence            66778899999998877 666788999999999999999997 67889999999999999886      56999999888


Q ss_pred             HHHHHH-HHHhhccCCCc
Q 011416          186 IPSFIL-LAFLGFQPESP  202 (486)
Q Consensus       186 ~~~~~~-~~~~~~~~e~~  202 (486)
                      ++.++. .+..++++|+.
T Consensus       389 ~~~~i~~~l~~~~~~~~~  406 (418)
T TIGR00889       389 GYIAILAVLFMIFFKYSH  406 (418)
T ss_pred             HHHHHHHHHHHHHhCCcc
Confidence            877775 44466667653

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.62  E-value=1.2e-14  Score=137.87  Aligned_cols=154  Identities=13%  Similarity=0.095  Sum_probs=127.0

Q ss_pred             chhch-hhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHH
Q 011416           46 FVGPT-VKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVG  124 (486)
Q Consensus        46 ~~~~~-~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G  124 (486)
                      ...|. +++++|.+..+.+++.+...++..++.+++|+++||+|||+.+..+.....+.......+++.+.+++.+++.+
T Consensus       237 ~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  316 (393)
T PRK15011        237 INMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNA  316 (393)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            34454 55778999999999988888888889999999999999999888877666665555566778888888999988


Q ss_pred             hccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHhHHHHHHHHHHhhccCC
Q 011416          125 VGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPE  200 (486)
Q Consensus       125 ~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~e  200 (486)
                      ++.+.. .....+..|..|+ +|+++.++.+...++|..+++.+++.+.+..||+..|++.+++.++.++..++.||
T Consensus       317 ~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  392 (393)
T PRK15011        317 IYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRIKD  392 (393)
T ss_pred             HHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence            877766 5555677788874 69999999999999999999999999999899999999888888777766666654

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.61  E-value=1.3e-14  Score=139.17  Aligned_cols=149  Identities=7%  Similarity=-0.047  Sum_probs=127.0

Q ss_pred             hhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHhccCcc-h
Q 011416           53 SEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-H  131 (486)
Q Consensus        53 ~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~-~  131 (486)
                      .+.+.+..+.|++.++..++..++.+++|++.||+|+|+.+..+.++.+++..+.++++|.+.+++.+++.|++.+.. +
T Consensus       255 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~  334 (420)
T PRK09528        255 ATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLV  334 (420)
T ss_pred             hccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            344667778899999999999999999999999999999999999999999899999999999999999999988776 5


Q ss_pred             hhhhhhccccCCCchhHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHhHHHHHHHHHH-hhccCCC
Q 011416          132 VFLSWFLEFVPPSNRGMWMVI-FSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAF-LGFQPES  201 (486)
Q Consensus       132 ~~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~i~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~-~~~~~e~  201 (486)
                      ....++.|.+|++.|+...+. ++....+|.++++.+.+.+.+..||+..|.+.+++.++..++ .+.++++
T Consensus       335 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~  406 (420)
T PRK09528        335 GVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGD  406 (420)
T ss_pred             HHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            666788899999999887655 677788999999999999999999999999988877665443 4444443

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.60  E-value=1.6e-14  Score=129.04  Aligned_cols=185  Identities=13%  Similarity=0.053  Sum_probs=156.2

Q ss_pred             hchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHh
Q 011416          277 FSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTA  356 (486)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~  356 (486)
                      .++.+.+.++..++.+.+..+.--.+..-.|.+           .++.+++..+.+.+.+...+..-++.++.|.++||.
T Consensus        23 y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l-----------~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~   91 (448)
T COG2271          23 YKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPAL-----------IEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS   91 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHH-----------HHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC
Confidence            334343444444444444444444444444433           356679999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHH
Q 011416          357 GRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPL  436 (486)
Q Consensus       357 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~  436 (486)
                      +.|..+..+++++++..+++.+.++.+.+.++..+-|.+.+...|.....+.+-+|+++||+..++-|+..++|+.+.|.
T Consensus        92 npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~  171 (448)
T COG2271          92 NPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPL  171 (448)
T ss_pred             CCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HH--HHHHHhhccchHHHHHHHHHHHHHHHHhcccccc
Q 011416          437 VA--VALVANCHQMTAVVLLVVVIVTSILSVMLIPFET  472 (486)
Q Consensus       437 i~--g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (486)
                      +.  +.+.++.+|...|+.-++++++.+++.+...+++
T Consensus       172 ~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~  209 (448)
T COG2271         172 VALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDR  209 (448)
T ss_pred             HHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99  8999988999999999999988888877776544

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.59  E-value=3.7e-14  Score=141.34  Aligned_cols=139  Identities=14%  Similarity=0.076  Sum_probs=120.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHhccCcc-hhhhhhhcccc
Q 011416           63 SLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFV  141 (486)
Q Consensus        63 g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~  141 (486)
                      .+...+..++..++.++.|+++||+|||++++++.++.+++.++.+++++...+++.+++.|++.+.. +...++++|++
T Consensus       598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~  677 (742)
T TIGR01299       598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY  677 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            34456677899999999999999999999999999999999999999999888888898888877766 77778999999


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHhHHHHHHHHHHhhccCCCc
Q 011416          142 PPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESP  202 (486)
Q Consensus       142 ~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~e~~  202 (486)
                      |.++|++++|+.++...+|.+++|.+++.+.+. +...+|++.+++.++..++..++||+.
T Consensus       678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~~LPET~  737 (742)
T TIGR01299       678 PSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLALKLPDTR  737 (742)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            999999999999999999999999999987663 456788888777777766666778864

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.59  E-value=1e-13  Score=132.08  Aligned_cols=180  Identities=10%  Similarity=-0.044  Sum_probs=146.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHH
Q 011416          283 RTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSI  362 (486)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~  362 (486)
                      +.+...++.+.....-........+.+           .++++.+..+.++..+...++..++.+..|++.||+|||+++
T Consensus         8 ~~~~~~~~~~~~~~~d~~~~~~~~~~l-----------~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~   76 (412)
T TIGR02332         8 RLIIFLFILFIFSFLDRINIGFAGLTM-----------GKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWI   76 (412)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHhh-----------HhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHH
Confidence            444444445554444444444445533           356789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 011416          363 TIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALV  442 (486)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~  442 (486)
                      ..+.++..++.+...+.++.+.+.+.-++.|++.+...+....++.|.+|+++|+++.|+.+....+|..+++.+.+++.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~  156 (412)
T TIGR02332        77 AGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYIL  156 (412)
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999888888888888888888888999999988988899999999999999999999999999999999999887


Q ss_pred             H------hhccchHHHHHHHHHHHHHHHHhccccccc
Q 011416          443 A------NCHQMTAVVLLVVVIVTSILSVMLIPFETK  473 (486)
Q Consensus       443 ~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (486)
                      +      ..||+..|.+.++..++..++.+++.||++
T Consensus       157 ~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p  193 (412)
T TIGR02332       157 ALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSP  193 (412)
T ss_pred             hCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCc
Confidence            5      358999999888777766666666655554

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.58  E-value=1.6e-13  Score=131.81  Aligned_cols=147  Identities=11%  Similarity=0.025  Sum_probs=128.3

Q ss_pred             ccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhh
Q 011416          322 FSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFT  401 (486)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (486)
                      ++.|.+..+.++..+...++..++.++.|++.||+|||+++.++.++.+++.++....++.+...+..++.+++.+...+
T Consensus        51 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~  130 (434)
T PRK11663         51 ADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWP  130 (434)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccch
Confidence            45689999999999999999999999999999999999999999999999888887777777777767777888888888


Q ss_pred             hHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhcc
Q 011416          402 VSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLI  468 (486)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  468 (486)
                      ....++.|.+|+++|++++|+.+...++|..++|.+.+.+.+..||+..+.+.+++.++..++..+.
T Consensus       131 ~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~  197 (434)
T PRK11663        131 VCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWR  197 (434)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999999999999888777666554444433

>PRK10054 putative transporter; Provisional

Probab=99.58  E-value=1e-13  Score=131.35  Aligned_cols=172  Identities=12%  Similarity=-0.043  Sum_probs=133.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHH
Q 011416          287 LLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMF  366 (486)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~  366 (486)
                      .+....++....++....+.+.+.          .+++|.+..+.++..+...+..+++.++.|+++||+|||+++.++.
T Consensus        11 ~l~~~~~~~~~g~~~~~~~l~~~l----------~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~   80 (395)
T PRK10054         11 ALLASSLLLTIGRGATLPFMTIYL----------SRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAI   80 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----------HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHH
Confidence            333444444444444444444332          2346899999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011416          367 TLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH  446 (486)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g  446 (486)
                      ++.+++.+.+.+.++.+...+...+.+.+.+...+....+..|..|+++|+++.|+.+...++|..++|.+.+.+.+ .+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g  159 (395)
T PRK10054         81 TAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QS  159 (395)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc
Confidence            88888887777766666555555556666666677888999999999999999999999999999999999998875 68


Q ss_pred             cchHHHHHHHHHHHHHHHHhccc
Q 011416          447 QMTAVVLLVVVIVTSILSVMLIP  469 (486)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~~~~  469 (486)
                      +...|...+++.++..++..+..
T Consensus       160 ~~~~f~~~~~~~~i~~i~~~~~~  182 (395)
T PRK10054        160 INLPFWLAAICSAFPLVFIQIWV  182 (395)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHH
Confidence            88888887777776655554433

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.58  E-value=1.4e-13  Score=128.84  Aligned_cols=149  Identities=17%  Similarity=0.028  Sum_probs=129.9

Q ss_pred             ccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhh
Q 011416          322 FSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFT  401 (486)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (486)
                      ++.|.+..+.++..+...++..++.++.|+++||+|||+++..+.++.+++.+...+.++.+...+..++.|++.+...+
T Consensus        25 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~  104 (352)
T PF07690_consen   25 EELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFSP  104 (352)
T ss_dssp             CCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccccccccccccc
Confidence            45678999999999999999999999999999999999999999999988855554445666778888899999999999


Q ss_pred             hHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhcccc
Q 011416          402 VSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPF  470 (486)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  470 (486)
                      ....++.|.+|+++|++++++.+....+|..++|.+.+.+.+..+|...+++.+++.++..++...+.+
T Consensus       105 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~  173 (352)
T PF07690_consen  105 ASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLP  173 (352)
T ss_dssp             HHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC-
T ss_pred             cccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhh
Confidence            999999999999999999999999999999999999999998888999999999998888775444443

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.58  E-value=1.8e-13  Score=129.66  Aligned_cols=150  Identities=11%  Similarity=-0.020  Sum_probs=132.4

Q ss_pred             ccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhh
Q 011416          322 FSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFT  401 (486)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (486)
                      ++.|.++.+.++..+...++..++.++.|++.||+|||+.+..+.++.+++.+.....++.+..++.-++.|++.+...+
T Consensus        48 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~  127 (394)
T PRK10213         48 QDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWA  127 (394)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHH
Confidence            56689999999999999999999999999999999999999999999998888887778888888888899999999999


Q ss_pred             hHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhccccc
Q 011416          402 VSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFE  471 (486)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  471 (486)
                      ....++.|.+|+++|+.+.++.....+++..++|.+.+.+.+..+|...|++.+++.+++.+......|+
T Consensus       128 ~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~  197 (394)
T PRK10213        128 MSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPS  197 (394)
T ss_pred             HHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            9999999999999999999999999999999999999999999999998988877666655444433344

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.58  E-value=1.5e-12  Score=115.36  Aligned_cols=179  Identities=18%  Similarity=0.147  Sum_probs=125.2

Q ss_pred             CCchHHHHHHHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHH
Q 011416           19 FGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEAL   98 (486)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~   98 (486)
                      ..+.|+.-+.+-.++...    .-..+|..-.+-+++|.+..|++.+....+....+..++.|.++||+|||+.-+.-++
T Consensus        32 f~~Fqr~yl~vY~La~~a----DWLQGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~ci  107 (354)
T PF05631_consen   32 FRRFQRKYLLVYLLAMAA----DWLQGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCI  107 (354)
T ss_pred             HHHHHHHHHHHHHHHHHH----HHhhcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence            445555544444443333    3344565556667899999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhhcCCCHHHHHHHHHHHHhccCcc-hhhhhhh-cccc----CCCchhHHHHHHH-HHHHHHHHHHHHHHHHH
Q 011416           99 VTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWF-LEFV----PPSNRGMWMVIFS-SFWTIGSVSEAIGAWII  171 (486)
Q Consensus        99 ~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~-~~~~~~i-~~~~----~~~~r~~~~~~~~-~~~~~G~~i~~~l~~~l  171 (486)
                      +.+++++ +-..+|++.++++|++.|++.... .+--+++ .|.-    |++..+..++... ...++-.+++..++..+
T Consensus       108 ly~~scl-~k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l  186 (354)
T PF05631_consen  108 LYSLSCL-TKHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVL  186 (354)
T ss_pred             HHHHHHH-HHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHH
Confidence            9999886 555689999999999999999888 5555654 4553    2333344444333 23344445556666677


Q ss_pred             hcCCCc--HHHHHHhHHHHHHHHHH-hhccCCCc
Q 011416          172 MPRLDW--RWLLGLSSIPSFILLAF-LGFQPESP  202 (486)
Q Consensus       172 ~~~~~w--~~~f~~~~~~~~~~~~~-~~~~~e~~  202 (486)
                      .+..+.  ..+|.....+.++..++ ....+|+.
T Consensus       187 ~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENy  220 (354)
T PF05631_consen  187 ADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENY  220 (354)
T ss_pred             HHHhCCCCcchHHHHHHHHHHHHHHHHhcccccC
Confidence            665554  77888877766665433 33445543

>PRK03545 putative arabinose transporter; Provisional

Probab=99.58  E-value=1.4e-13  Score=130.54  Aligned_cols=150  Identities=10%  Similarity=-0.036  Sum_probs=132.8

Q ss_pred             ccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhh
Q 011416          322 FSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFT  401 (486)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (486)
                      +++|.++.+.++..+...++..++.+..|.+.||+|||+++..+..+.+++.+...+.++.+...+.-++.|++.+...+
T Consensus        37 ~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~  116 (390)
T PRK03545         37 QSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWS  116 (390)
T ss_pred             hHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999988888888888887777888888877888


Q ss_pred             hHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhccccc
Q 011416          402 VSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFE  471 (486)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  471 (486)
                      ...+++.|.+|+++|++++|+......+|..++|.+.+.+.+..||+..|++.+++.++..+..+...|+
T Consensus       117 ~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~  186 (390)
T PRK03545        117 ITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPL  186 (390)
T ss_pred             HHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            8899999999999999999999999999999999999999999999999999888877766655554443

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.57  E-value=2.1e-13  Score=123.68  Aligned_cols=179  Identities=12%  Similarity=-0.009  Sum_probs=164.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhH
Q 011416          281 LARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKL  360 (486)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~  360 (486)
                      .....+.+....|+.....+...-..|.+.           ++++.+...+|...+.+..+..++.++...+.||+.||+
T Consensus        11 ~~~~l~aLa~~~F~igttEfv~~gLLp~iA-----------~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~   79 (394)
T COG2814          11 MWLALLALALAAFAIGTTEFVPVGLLPPIA-----------ADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRR   79 (394)
T ss_pred             chHHHHHHHHHHHHHHhHHHHHHhchHHHH-----------HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence            345556666677777777777777778666           567899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHH
Q 011416          361 SITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVA  440 (486)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~  440 (486)
                      ++.....+..++.++..+.++.+.+.+.=++.++..+..++...+...++.|+++|+++.++......++..+|..+..+
T Consensus        80 lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~  159 (394)
T COG2814          80 LLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTF  159 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhccchHHHHHHHHHHHHHHHHhcccc
Q 011416          441 LVANCHQMTAVVLLVVVIVTSILSVMLIPF  470 (486)
Q Consensus       441 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  470 (486)
                      +-|..||+.+|+..+++.+++.+..+...|
T Consensus       160 ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         160 LGQLFGWRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999999999999999999988888877

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.57  E-value=2.3e-14  Score=135.53  Aligned_cols=146  Identities=13%  Similarity=0.039  Sum_probs=125.9

Q ss_pred             chhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcCCCH--HHHHHHHHHH
Q 011416           46 FVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNY--ITLITLRCLV  123 (486)
Q Consensus        46 ~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a~~~--~~l~~~r~l~  123 (486)
                      ...+.+.++++.+..+.+++.+.+.++..++.++.|++.||+|||+.+..+..+.+++.++..+.++.  ..++...++.
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (377)
T TIGR00890       226 GLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALV  305 (377)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHH
Confidence            34455678899999999999999999999999999999999999999999999998888887777643  3345667888


Q ss_pred             HhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHhHHHHHHH
Q 011416          124 GVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFIL  191 (486)
Q Consensus       124 G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~f~~~~~~~~~~  191 (486)
                      |++.+.. +....++.|.+|+++|+++.|+.+....+|..++|.+.+.+.+..||+..|.+.+++.++.
T Consensus       306 g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       306 FFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             HHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            8888776 5566788899999999999999999999999999999999999999999998887776654

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.57  E-value=9.1e-14  Score=130.11  Aligned_cols=163  Identities=24%  Similarity=0.285  Sum_probs=143.9

Q ss_pred             HHHHhhHhhhhchhchhhhhc-CCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchH-HHHHHHHHHHHhhhhhhcCCC
Q 011416           35 VAEAMEIMILSFVGPTVKSEW-NLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRM-GFLGEALVTAGAGLLSSFSPN  112 (486)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~-~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~-~~~~~~~~~~~~~~~~~~a~~  112 (486)
                      +.............|.+.++. |.+..+.+++.+...++..++.++.|++.||+|||+ .+..+..+..++.+...+.++
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  264 (352)
T cd06174         185 FLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPS  264 (352)
T ss_pred             HHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc
Confidence            333444444555566666654 999999999999999999999999999999999999 999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHhHHHHHHH
Q 011416          113 YITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFIL  191 (486)
Q Consensus       113 ~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~f~~~~~~~~~~  191 (486)
                      .+.+.+..++.|++.+.. +....++.|..|+++|++.+++.+...++|..+++.+.+.+.+..+|+..+.+.+++.++.
T Consensus       265 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~  344 (352)
T cd06174         265 LALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLA  344 (352)
T ss_pred             HHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHH
Confidence            999999999999999988 7778899999999999999999999999999999999999999999999999999888887


Q ss_pred             HHHhhc
Q 011416          192 LAFLGF  197 (486)
Q Consensus       192 ~~~~~~  197 (486)
                      .+...+
T Consensus       345 ~i~~~~  350 (352)
T cd06174         345 ALLLLL  350 (352)
T ss_pred             HHHhee
Confidence            665544

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.57  E-value=1.2e-13  Score=131.04  Aligned_cols=152  Identities=16%  Similarity=0.067  Sum_probs=134.4

Q ss_pred             ccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhh
Q 011416          322 FSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFT  401 (486)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (486)
                      ++.|.++.+.++..+...++..++.++.|++.||+|||+.+..+.++.+++.+.....++.+...+..++.+++.+...+
T Consensus        33 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~  112 (385)
T TIGR00710        33 ADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSV  112 (385)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHH
Confidence            45678999999999999999999999999999999999999999999888888887777777777788888888888889


Q ss_pred             hHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhccccccc
Q 011416          402 VSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETK  473 (486)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (486)
                      ...+++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..+|...+++.+++.++..+..+...||++
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (385)
T TIGR00710       113 ISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETL  184 (385)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            999999999999999999999999999999999999999999989998888888877777666665555544

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.57  E-value=1e-13  Score=132.43  Aligned_cols=157  Identities=15%  Similarity=0.074  Sum_probs=128.9

Q ss_pred             hhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHH
Q 011416           43 ILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCL  122 (486)
Q Consensus        43 ~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r~l  122 (486)
                      ......|.+.++.|.+..+.+.+.+.+.++..++.++.|++.||+|||+.+..+.+..+++.++..+.++.+.+.+..++
T Consensus       238 ~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (406)
T PRK11551        238 FLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFA  317 (406)
T ss_pred             HHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            33445677778899999999999999999999999999999999999999988877777777777778888888888888


Q ss_pred             HHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CcHHHHHHhHHHHHHHHHHhhccC
Q 011416          123 VGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRL-DWRWLLGLSSIPSFILLAFLGFQP  199 (486)
Q Consensus       123 ~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~-~w~~~f~~~~~~~~~~~~~~~~~~  199 (486)
                      .|++.+.. +...+++.|.+|+++|++..|+.+....+|..++|.+++.+.++. +|...++......++..+..+++.
T Consensus       318 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (406)
T PRK11551        318 AGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLLV  396 (406)
T ss_pred             HHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence            88877666 667788899999999999999999999999999999999998865 455566655555555444444433

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.55  E-value=1.7e-13  Score=130.65  Aligned_cols=154  Identities=16%  Similarity=0.089  Sum_probs=129.3

Q ss_pred             chhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHh
Q 011416           46 FVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGV  125 (486)
Q Consensus        46 ~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~  125 (486)
                      ...|.+.++.|.  .+.++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++..+.+|.+.+++.+++.|+
T Consensus       237 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~  314 (399)
T PRK05122        237 TFITLYYAARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGF  314 (399)
T ss_pred             HHHHHHHHHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            334444555565  345677788889999999999999999999999999999888888888888898888899999999


Q ss_pred             ccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHhHHHHHHHHHHhhccCCC
Q 011416          126 GLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPES  201 (486)
Q Consensus       126 ~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~e~  201 (486)
                      +.+.. +.....+.|..|+++|+++.++++....+|..+++++.+.+.+..||+..|++.+++.++..+...+++++
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  391 (399)
T PRK05122        315 GFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRR  391 (399)
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            98877 56566777899999999999999999999999999999999999999999999888877766555555443

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.55  E-value=1.2e-13  Score=130.55  Aligned_cols=149  Identities=14%  Similarity=0.126  Sum_probs=125.7

Q ss_pred             hhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHhccCc
Q 011416           50 TVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGS  129 (486)
Q Consensus        50 ~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~  129 (486)
                      .+.+++|.+..+.+++.+.......++.++.|++.||+|||+++..+.++..+......+.++.+.+.+.+++.|++.+.
T Consensus       225 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~  304 (375)
T TIGR00899       225 LIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGI  304 (375)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34577899999999998888888888899999999999999999888777666666666677888888899999998887


Q ss_pred             c-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHhHHHHHHHHHHhhccC
Q 011416          130 G-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQP  199 (486)
Q Consensus       130 ~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~  199 (486)
                      . +....++.|..|+ +++++.++.+....+|..++|.+++.+.+..||+..|++.+++.++..+...+++
T Consensus       305 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  374 (375)
T TIGR00899       305 LAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLIK  374 (375)
T ss_pred             HHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHheec
Confidence            7 6666778888765 5679999999999999999999999999999999999998888777766665554

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK10504 putative transporter; Provisional

Probab=99.54  E-value=4.6e-13  Score=130.54  Aligned_cols=178  Identities=12%  Similarity=-0.006  Sum_probs=146.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHH
Q 011416          283 RTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSI  362 (486)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~  362 (486)
                      +.++..+...+......+......|.+.           ++.|.++.+.++......++..++.++.|+++||+|||+++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~-----------~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~   78 (471)
T PRK10504         10 WQLWIVAFGFFMQSLDTTIVNTALPSMA-----------QSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIF   78 (471)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHH-----------HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence            4455556666666666666666666554           45688989988888888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 011416          363 TIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALV  442 (486)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~  442 (486)
                      ..+..+.+++.+.....++.+...+..++.|++.+...+.....+.|.+|+++|++++|+.+...++|..++|.+.|.+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~  158 (471)
T PRK10504         79 FTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLV  158 (471)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            98888888777776666777777778888899988889999999999999999999999999999999999999999999


Q ss_pred             HhhccchHHHHHHHHHHHHHHHHhccccc
Q 011416          443 ANCHQMTAVVLLVVVIVTSILSVMLIPFE  471 (486)
Q Consensus       443 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  471 (486)
                      +..+|...|.+...+..+..+......++
T Consensus       159 ~~~gw~~~f~~~~~~~~l~~~~~~~~~~~  187 (471)
T PRK10504        159 EYASWHWIFLINIPVGIIGAIATLMLMPN  187 (471)
T ss_pred             hhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999988888877776666665555443

>TIGR00895 2A0115 benzoate transport

Probab=99.54  E-value=2.1e-13  Score=130.10  Aligned_cols=174  Identities=18%  Similarity=0.082  Sum_probs=141.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHH
Q 011416          288 LWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFT  367 (486)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~  367 (486)
                      .....+.............|.+.           +++|.+..+.++......++.+++.++.|+++||+|||+.+..+.+
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~   90 (398)
T TIGR00895        22 SFLIMLMDGYDLAAMGFAAPAIS-----------AEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSIL   90 (398)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHh-----------hccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHH
Confidence            33344444444444445555443           4567888999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011416          368 LSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQ  447 (486)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~  447 (486)
                      +.+++.++....++.+...+..++.+++.+...+...++..|.+|++.|+++.++.+....+|..++|.+.+.+.+..+|
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~  170 (398)
T TIGR00895        91 LFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGW  170 (398)
T ss_pred             HHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccc
Confidence            88888888777777777777888888988889999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHHhcccccc
Q 011416          448 MTAVVLLVVVIVTSILSVMLIPFET  472 (486)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~~~~~~~  472 (486)
                      ...+.+.+++.++..++.+...+++
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~  195 (398)
T TIGR00895       171 RSLFYVGGIAPLLLLLLLMRFLPES  195 (398)
T ss_pred             eeehhhhhhHHHHHHHHHHHhCCCC
Confidence            8888887666665555555444443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.54  E-value=1.3e-13  Score=130.29  Aligned_cols=155  Identities=10%  Similarity=-0.059  Sum_probs=133.9

Q ss_pred             hhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcCCCHHHHHH
Q 011416           39 MEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLIT  118 (486)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a~~~~~l~~  118 (486)
                      ..........|.+.+++|.+..+.|++.+...++..+..++.+++.||+|+|+.+.++.++.++..++.++++|.+.+++
T Consensus       219 ~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  298 (382)
T TIGR00902       219 GAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFL  298 (382)
T ss_pred             HHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHH
Confidence            33333444556666789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCcHHHHHHhHHHHHHHHHHh
Q 011416          119 LRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFS-SFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFL  195 (486)
Q Consensus       119 ~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~i~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~  195 (486)
                      .+++.|++.+.. +....++.+. |+++|++..++++ ...++|.++++.++|.+.++.|+ ..|++.++++++.+++.
T Consensus       299 ~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~~  375 (382)
T TIGR00902       299 LQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFLI  375 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHH
Confidence            999999999998 7777888887 8999999999986 57789999999999999999997 66777777776654443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.53  E-value=6.3e-13  Score=127.13  Aligned_cols=169  Identities=16%  Similarity=0.150  Sum_probs=139.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHH
Q 011416          282 ARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLS  361 (486)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~  361 (486)
                      ++.+...++.++...+..+......+.+.           ++.+.+..+.++..+...++..++.++.|++.||+|||++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----------~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~   79 (405)
T TIGR00891        11 WNAFSAAWLGWLLDAFDFFLVALVLAEVA-----------GEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLP   79 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            34445555556666666666666666544           4568899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHH
Q 011416          362 ITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVAL  441 (486)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l  441 (486)
                      +..+.++.+++.+...+.++.+......++.|++.+...+...+++.|..|+++|+++.++.+....+|..+++.+.+.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l  159 (405)
T TIGR00891        80 MVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLV  159 (405)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999888888888877778888888888899998999999999999999999999999999999999999999999998


Q ss_pred             HHhhc--cchHHHHHHHHHHHH
Q 011416          442 VANCH--QMTAVVLLVVVIVTS  461 (486)
Q Consensus       442 ~~~~g--~~~~~~~~~~~~~~~  461 (486)
                      .+..+  |...+.+.+...++.
T Consensus       160 ~~~~~~~w~~~f~~~~~~~~~~  181 (405)
T TIGR00891       160 VPVWGDGWRALFFISILPIIFA  181 (405)
T ss_pred             HHhcCccHHHHHHHHHHHHHHH
Confidence            88766  776666554444433

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.53  E-value=8.8e-13  Score=128.83  Aligned_cols=177  Identities=15%  Similarity=0.038  Sum_probs=143.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHH
Q 011416          285 TILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITI  364 (486)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~  364 (486)
                      ...+++..+....-...+..-.|.+.           ++.|.+..+.++....+.++...+.+..|+++||+|||+.+..
T Consensus         8 ~~~~~~~~~~~~ld~tiv~~a~p~i~-----------~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~   76 (495)
T PRK14995          8 LVIIVLVYIPVAIDATVLHVAAPTLS-----------MTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLML   76 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            33344444444444444445555544           4567888889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhhccccc-cccchhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 011416          365 MFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIY-PTSVRSTGAGAANAMGRIGGMVCPLVAVALVA  443 (486)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~  443 (486)
                      +..+.+++.+.....++.+..++.-.+.|++.+...+.....+.+.+ |+++|++++|+......+|..++|.+.|.+.+
T Consensus        77 ~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~  156 (495)
T PRK14995         77 GGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLE  156 (495)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999988888888888888888889988888887777776655 67899999999999999999999999999999


Q ss_pred             hhccchHHHHHHHHHHHHHHHHhcccccc
Q 011416          444 NCHQMTAVVLLVVVIVTSILSVMLIPFET  472 (486)
Q Consensus       444 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (486)
                      +.+|++.|++...+.++..++.....|+.
T Consensus       157 ~~gwr~~f~i~~~~~~~~~~l~~~~l~~~  185 (495)
T PRK14995        157 HFYWGSVFLINVPIVLVVMGLTARYVPRQ  185 (495)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            99999999988877777766666655554

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.53  E-value=7e-13  Score=126.16  Aligned_cols=174  Identities=14%  Similarity=0.090  Sum_probs=133.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHh-chhHH
Q 011416          283 RTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTA-GRKLS  361 (486)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~-g~~~~  361 (486)
                      +.++..+...+...+.+|++..+.+.+..          +..|.++.+++...........++.+++|+++||+ |||+.
T Consensus         9 ~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~----------~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~   78 (493)
T PRK15462          9 RAIYYVVALQIWEYFSFYGMRALLILYLT----------NQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMA   78 (493)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHH
Confidence            44555555666677788888877776652          24588999999999999999999999999999998 99999


Q ss_pred             HHHHHHHHHHHHHHHhhhc-hhHHHHHHHHHHHHhhhhhhhhHhhhcccccccc--chhhHhHHHHHHHHHHHHHHHHHH
Q 011416          362 ITIMFTLSCLFLLPLVTYQ-SNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTS--VRSTGAGAANAMGRIGGMVCPLVA  438 (486)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~~~~i~  438 (486)
                      +.++.++..++.+++.... +.........+..++.+...+...++..|.+|++  .|.++.++.+...++|+.++|.+.
T Consensus        79 iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~  158 (493)
T PRK15462         79 VMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIAC  158 (493)
T ss_pred             HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHH
Confidence            9999999888876665422 2222333333444555666677788899999875  699999999999999999999999


Q ss_pred             HHHHHhhccchHHHHHHHHHHHHHHHHh
Q 011416          439 VALVANCHQMTAVVLLVVVIVTSILSVM  466 (486)
Q Consensus       439 g~l~~~~g~~~~~~~~~~~~~~~~~~~~  466 (486)
                      |++.+..||+..|.+.++..+++.+..+
T Consensus       159 g~L~~~~Gw~~~F~iaaigm~l~li~~~  186 (493)
T PRK15462        159 GYAQEEYSWAMGFGLAAVGMIAGLVIFL  186 (493)
T ss_pred             HHHHhhhChHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998887665555444443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.53  E-value=6.2e-13  Score=128.58  Aligned_cols=175  Identities=15%  Similarity=0.022  Sum_probs=141.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHH-hchhHHH
Q 011416          284 TTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDT-AGRKLSI  362 (486)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr-~g~~~~~  362 (486)
                      .++.++...++..+.+|+...+.+.+.+..        ...|.+..+++.......++..++.+++|+++|| +|||+.+
T Consensus        11 ~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~--------~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l   82 (475)
T TIGR00924        11 PLFTLFFVELWERFSYYGMQGILAVYLVQQ--------AGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTM   82 (475)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHH
Confidence            344455566667778888777777664210        0168899999999999999999999999999999 8999999


Q ss_pred             HHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccc---hhhHhHHHHHHHHHHHHHHHHHHH
Q 011416          363 TIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV---RSTGAGAANAMGRIGGMVCPLVAV  439 (486)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~g~~~~~~i~g  439 (486)
                      .++.++.+++.+++...++.+...+...+.+++.+...+...++..+.+|+++   |+++.++.+...++|..++|.+.+
T Consensus        83 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g  162 (475)
T TIGR00924        83 VLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAG  162 (475)
T ss_pred             HHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHH
Confidence            99999999998888876666666666677788888888889999999988754   888999999999999999999999


Q ss_pred             HHHHhhccchHHHHHHHHHHHHHHHHh
Q 011416          440 ALVANCHQMTAVVLLVVVIVTSILSVM  466 (486)
Q Consensus       440 ~l~~~~g~~~~~~~~~~~~~~~~~~~~  466 (486)
                      ++.++.+|...|...++..+++.+...
T Consensus       163 ~l~~~~g~~~~f~~~~~~~~~~~l~~~  189 (475)
T TIGR00924       163 VIAENYGYHVGFNLAAVGMVIGLLTFF  189 (475)
T ss_pred             HHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence            999998999888887765555544433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.52  E-value=1.9e-13  Score=130.24  Aligned_cols=151  Identities=13%  Similarity=0.024  Sum_probs=134.5

Q ss_pred             ccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhh
Q 011416          322 FSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFT  401 (486)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (486)
                      ++.|.+..+.++......++..++.++.|++.||+|||+.+..+.++.+++.+.....++.+...+..++.|++.+...+
T Consensus        22 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~  101 (399)
T TIGR00893        22 EDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFP  101 (399)
T ss_pred             HhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhhh
Confidence            34578899999999999999999999999999999999999999998888888888777888888888899999999999


Q ss_pred             hHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhcccccc
Q 011416          402 VSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFET  472 (486)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (486)
                      ....++.|.+|+++|++++++.+....+|..++|.+.+.+.+..+|...+...+++.++..+..+...+++
T Consensus       102 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (399)
T TIGR00893       102 GIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDP  172 (399)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCC
Confidence            99999999999999999999999999999999999999999999999999888887777666665554443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.52  E-value=1.6e-12  Score=126.15  Aligned_cols=178  Identities=13%  Similarity=0.138  Sum_probs=132.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchh
Q 011416          280 KLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRK  359 (486)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~  359 (486)
                      +..+.+...+...+......+....+.+.+.           +++|.+..+.+...+...++..++.++.|+++||+|||
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----------~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r  101 (476)
T PLN00028         33 PHMRAFHLSWISFFTCFVSTFAAAPLLPIIR-----------DNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPR  101 (476)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh
Confidence            3345555555555555555555555555443           56688889999888888899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHH
Q 011416          360 LSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAV  439 (486)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g  439 (486)
                      +++..+.++.+++.++.....+.+...+..++.|++.+... ....++.|.+|+++|+++.|+.+...++|..+++.+.+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~  180 (476)
T PLN00028        102 YGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMP  180 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999888888888777777677666666667777665543 34567889999999999999999888888888877766


Q ss_pred             HHHH----h-----hccchHHHHHHHHHHHHHHHHhccc
Q 011416          440 ALVA----N-----CHQMTAVVLLVVVIVTSILSVMLIP  469 (486)
Q Consensus       440 ~l~~----~-----~g~~~~~~~~~~~~~~~~~~~~~~~  469 (486)
                      .+.+    .     .||+..|++.+++.++..+..+++.
T Consensus       181 ~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~  219 (476)
T PLN00028        181 LVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLG  219 (476)
T ss_pred             HHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence            5533    1     4788899988888777666665554

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.52  E-value=2.6e-13  Score=129.82  Aligned_cols=154  Identities=14%  Similarity=0.089  Sum_probs=127.2

Q ss_pred             hhhchhchhhhhcCCCcc----hhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcCCCHHHHHH
Q 011416           43 ILSFVGPTVKSEWNLSST----EESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLIT  118 (486)
Q Consensus        43 ~~~~~~~~~~~~~~~s~~----~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a~~~~~l~~  118 (486)
                      ...+..+.+.++.+.+..    ..+.+.++..++..++.+..|++.||+|||+.+..+..+..++.+...+.++.+.+++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (408)
T PRK09874        237 SIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGI  316 (408)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            334445555555433333    2466677778888999999999999999999999999888888888888888999999


Q ss_pred             HHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHhHHHHHHHHHHhh
Q 011416          119 LRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLG  196 (486)
Q Consensus       119 ~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~  196 (486)
                      .+++.|++.+.. +...+.+.+..++++||+.+++......+|..+||.+++.+.+..||+..|++.+++.++..+..+
T Consensus       317 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~  395 (408)
T PRK09874        317 LRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSW  395 (408)
T ss_pred             HHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Confidence            999999999888 666677888889999999999999999999999999999999999999999999888777655443

>PRK03699 putative transporter; Provisional

Probab=99.52  E-value=1.4e-12  Score=123.78  Aligned_cols=173  Identities=13%  Similarity=0.114  Sum_probs=137.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHH
Q 011416          283 RTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSI  362 (486)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~  362 (486)
                      +.++..++.++.............|.+.           ++++.+..+.++......++..++.++.|++.||+|||+.+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~-----------~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~   75 (394)
T PRK03699          7 KLTWISFLSYALTGALVIVTGMVMGPIA-----------EYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQL   75 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHH-----------HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            4444444444444444455555555544           45678999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 011416          363 TIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALV  442 (486)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~  442 (486)
                      ..+..+.+++.++....++.+...+..++.+++.+...+.....+.|.+|+++|+.+.+..+....+++.++|.+.+.+.
T Consensus        76 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  155 (394)
T PRK03699         76 IFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLL  155 (394)
T ss_pred             HHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99988888888887777777777777788888888888888889999999999999999998888899999999998876


Q ss_pred             H-hhccchHHHHHHHHHHHHHHHHh
Q 011416          443 A-NCHQMTAVVLLVVVIVTSILSVM  466 (486)
Q Consensus       443 ~-~~g~~~~~~~~~~~~~~~~~~~~  466 (486)
                      + ..+|+..+...+++.++..++.+
T Consensus       156 ~~~~gw~~~f~~~~~~~~~~~~~~~  180 (394)
T PRK03699        156 ARSIEWYWVYACIGLVYVAIFILTL  180 (394)
T ss_pred             hccccHHHHHHHHHHHHHHHHHHHH
Confidence            5 46888888887777666554443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.52  E-value=8.5e-13  Score=126.03  Aligned_cols=152  Identities=16%  Similarity=0.016  Sum_probs=129.8

Q ss_pred             ccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhh
Q 011416          322 FSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFT  401 (486)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (486)
                      ++++.++.+.+.......++..++.++.|+++||+|||+.+..+..+.+++.+.....++.+......++.|++.+...+
T Consensus        41 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~  120 (406)
T PRK15402         41 EDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGA  120 (406)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHH
Confidence            56678889999999999999999999999999999999999999888888888777777777777777777887777778


Q ss_pred             hHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhccccccc
Q 011416          402 VSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETK  473 (486)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (486)
                      ...+.+.|.+|++.+.++.++......++..++|.+.+.+.+..+|...+++.+++.+++.+..+...||++
T Consensus       121 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (406)
T PRK15402        121 VGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETA  192 (406)
T ss_pred             HHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            888889999999999999999988888999999999999999889999998888887777666555555543

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.52  E-value=4.9e-13  Score=131.07  Aligned_cols=151  Identities=13%  Similarity=-0.029  Sum_probs=134.5

Q ss_pred             ccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhh
Q 011416          322 FSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFT  401 (486)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (486)
                      ++.|.+..+.++......++.+++.++.|++.||+|||+.+..+.++..++.++....++.+...+..++.|++.+...+
T Consensus        30 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~  109 (485)
T TIGR00711        30 GDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIP  109 (485)
T ss_pred             HhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHH
Confidence            45678888999999999999999999999999999999999999999999888888888888888888889999898999


Q ss_pred             hHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhcccccc
Q 011416          402 VSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFET  472 (486)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (486)
                      ...+++.|.+|+++|+++.++......+|..++|.+.+++.++.+|...+++.+.+.++..++..+..+++
T Consensus       110 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~  180 (485)
T TIGR00711       110 LSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRD  180 (485)
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCc
Confidence            99999999999999999999999999999999999999999999999999888777776666655555443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK12382 putative transporter; Provisional

Probab=99.51  E-value=3.2e-13  Score=128.33  Aligned_cols=150  Identities=14%  Similarity=0.091  Sum_probs=127.3

Q ss_pred             hhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHH
Q 011416           44 LSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLV  123 (486)
Q Consensus        44 ~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~  123 (486)
                      .....|.+.++.+.+  +.++..+.+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+++..++.
T Consensus       235 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  312 (392)
T PRK12382        235 IGTFVSLYFASKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALT  312 (392)
T ss_pred             HHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            334445555566654  456667778888899999999999999999999999999999888888889998888899999


Q ss_pred             HhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHhHHHHHHHHHHh
Q 011416          124 GVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFL  195 (486)
Q Consensus       124 G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~  195 (486)
                      |++.+.. +...+.+.|.+|+++|+++.|+.+....+|..++|.+.+.+.++.||+..|.+.+++.++..+..
T Consensus       313 g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  385 (392)
T PRK12382        313 GAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVT  385 (392)
T ss_pred             HHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence            9998877 66667788999999999999999999999999999999999999999999999888777765443

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.51  E-value=1.1e-12  Score=128.85  Aligned_cols=167  Identities=17%  Similarity=0.130  Sum_probs=138.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhch
Q 011416          279 SKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGR  358 (486)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~  358 (486)
                      +..++.+..+++.++...+.........+.+.           +++|.+..+.+.......++..++.++.|++.||+||
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----------~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~   84 (496)
T PRK03893         16 RAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQ-----------GEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGR   84 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            34444555555555555566555555556443           4567889999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHH
Q 011416          359 KLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVA  438 (486)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~  438 (486)
                      |+.+..+.++.+++.+.....++.+...+..++.|++.+...+....++.|.+|+++|+.+.++.+....+|..++|.+.
T Consensus        85 r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  164 (496)
T PRK03893         85 RLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVY  164 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999888888888888778888888888889988888899999999999999999999999999999999999999


Q ss_pred             HHHHHhhccchHHHHHHH
Q 011416          439 VALVANCHQMTAVVLLVV  456 (486)
Q Consensus       439 g~l~~~~g~~~~~~~~~~  456 (486)
                      +.+.+..+|...+.+...
T Consensus       165 ~~l~~~~~w~~~f~~~~~  182 (496)
T PRK03893        165 SLVVPVWGWRALFFIGIL  182 (496)
T ss_pred             HHHhccCCHHHHHHHHHH
Confidence            999998888887765433

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.51  E-value=7.3e-13  Score=124.73  Aligned_cols=145  Identities=12%  Similarity=-0.020  Sum_probs=125.4

Q ss_pred             CCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhc-----hhHHHHHHHHHHHHhhhh
Q 011416          324 HHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQ-----SNILTTGLLFGARMCVMG  398 (486)
Q Consensus       324 ~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~  398 (486)
                      .+.++.+.++..+...++.+++.++.|+++||+|||+.+..+..+..++.+......     +.+...+..++.+++.+.
T Consensus        29 ~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~  108 (365)
T TIGR00900        29 GTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAF  108 (365)
T ss_pred             hhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence            457888999999999999999999999999999999999998888777776666544     677777788888898888


Q ss_pred             hhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhcc
Q 011416          399 AFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLI  468 (486)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  468 (486)
                      ..+...++..|..|+++|++++++.+....+|..++|.+.+.+.+..+|...+++.+...+++.+..+..
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  178 (365)
T TIGR00900       109 FTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSV  178 (365)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhc
Confidence            8999999999999999999999999999999999999999999999999888887776666655544443

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.51  E-value=8.8e-13  Score=125.36  Aligned_cols=152  Identities=14%  Similarity=0.091  Sum_probs=130.1

Q ss_pred             ccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhh
Q 011416          322 FSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFT  401 (486)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (486)
                      ++.+.+..+.++..+...++..++.++.|+++||+|||+.+..+.++.+++.+.....++.+...+..++.+++.+...+
T Consensus        31 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~  110 (392)
T PRK10473         31 ADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYV  110 (392)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHH
Confidence            44578888999999999999999999999999999999999999988888888877777766666677778888888888


Q ss_pred             hHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhccccccc
Q 011416          402 VSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETK  473 (486)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (486)
                      ....++.|.+|+++|+++.++.+....++..++|.+.+.+.+..+|...+.+.+++.++..++.....+|++
T Consensus       111 ~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~  182 (392)
T PRK10473        111 VAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETR  182 (392)
T ss_pred             HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            889999999999999999999999999999999999998888889988888888877777666655555544

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.51  E-value=5e-13  Score=128.04  Aligned_cols=158  Identities=16%  Similarity=0.097  Sum_probs=134.6

Q ss_pred             hchhchhhhh-cCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHH
Q 011416           45 SFVGPTVKSE-WNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLV  123 (486)
Q Consensus        45 ~~~~~~~~~~-~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~  123 (486)
                      ....|.+.++ +|.+..+.|++.+...++..++.++.+++.||.++++.+..+.++.+++.++..+.++.+.+.+..++.
T Consensus       243 ~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (417)
T PRK10489        243 RVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALF  322 (417)
T ss_pred             HHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence            3455666666 899999999999999999999999999999998888888888888888888888889988888889999


Q ss_pred             HhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHhHHHHHHH-HHHhhccCCC
Q 011416          124 GVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFIL-LAFLGFQPES  201 (486)
Q Consensus       124 G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~f~~~~~~~~~~-~~~~~~~~e~  201 (486)
                      |++.+.. +...+++.|..|++.||+++|+......+|..+|+.+.+.+.+..|++..++..++..++. .+....+++.
T Consensus       323 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (417)
T PRK10489        323 GYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGEL  402 (417)
T ss_pred             HHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccc
Confidence            9988776 5556788899999999999999999999999999999999999999999988877766554 4555555654


Q ss_pred             c
Q 011416          202 P  202 (486)
Q Consensus       202 ~  202 (486)
                      +
T Consensus       403 ~  403 (417)
T PRK10489        403 R  403 (417)
T ss_pred             c
Confidence            3

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.51  E-value=7.7e-13  Score=125.07  Aligned_cols=151  Identities=9%  Similarity=-0.019  Sum_probs=132.6

Q ss_pred             ccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhh
Q 011416          322 FSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFT  401 (486)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (486)
                      ++.|.+..+.++..+...++..++.++.|++.||+|||+.+..+..+.+++.++....++.+.+.+..++.|++.+...+
T Consensus        31 ~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~  110 (382)
T PRK10091         31 HDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFG  110 (382)
T ss_pred             HHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHH
Confidence            55688899999999999999999999999999999999999999999999988888888888888888888988888888


Q ss_pred             hHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhcccccc
Q 011416          402 VSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFET  472 (486)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (486)
                      .......|..|+++|+.++++......++..++|.+.+.+.+..+|...+.+.+.+.++..+..+...|+.
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~  181 (382)
T PRK10091        111 VGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDI  181 (382)
T ss_pred             HHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            88888899999999999999999999999999999999999988999999988887776665555445553

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.50  E-value=6.5e-13  Score=128.97  Aligned_cols=170  Identities=14%  Similarity=0.097  Sum_probs=126.6

Q ss_pred             HHHHHHHHHHHHhhHhhhhchhch-hhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhh-
Q 011416           27 LAYAGLGWVAEAMEIMILSFVGPT-VKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAG-  104 (486)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~-  104 (486)
                      +...++..++.+..........|. +.+++|.|..+.++..+...++..++.+++|+++||+|||+.+.....+..++. 
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~  339 (467)
T PRK09556        260 IWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFT  339 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHH
Confidence            334444455544444445555665 457799999999999999999999999999999999999988766544444333 


Q ss_pred             -hhhhcCCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHhc--------
Q 011416          105 -LLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTI-GSVSEAIGAWIIMP--------  173 (486)
Q Consensus       105 -~~~~~a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~i~~~l~~~l~~--------  173 (486)
                       +.....++.+.+.+.+++.|++.... ........|.+|+++||++.|+.+...++ |..++|.+.|.+.+        
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~  419 (467)
T PRK09556        340 LGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPI  419 (467)
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhccccccccc
Confidence             22334567777778888888654333 33335666999999999999999998886 77999999999988        


Q ss_pred             ----CCCcHHHHHHhHHHHHHHHHHhh
Q 011416          174 ----RLDWRWLLGLSSIPSFILLAFLG  196 (486)
Q Consensus       174 ----~~~w~~~f~~~~~~~~~~~~~~~  196 (486)
                          ..+|+..|++.++..++..+..+
T Consensus       420 ~~~~~~~~~~~f~~~~~~~~~~~~~~~  446 (467)
T PRK09556        420 FGYTLTGWAGTFAALDIAAIGCICLMA  446 (467)
T ss_pred             ccccccChHHHHHHHHHHHHHHHHHHH
Confidence                57899999988777766554443

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.50  E-value=1.8e-12  Score=123.35  Aligned_cols=151  Identities=13%  Similarity=-0.001  Sum_probs=126.9

Q ss_pred             ccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhh
Q 011416          322 FSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFT  401 (486)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (486)
                      ++.+.++.+.++......++..++.++.|+++||+|||+.+..+..+..++.+.....++.+...+..++.+++.+...+
T Consensus        36 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~  115 (394)
T PRK11652         36 RDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGV  115 (394)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHH
Confidence            45689999999999999999999999999999999999999999888888887777777777777777777887777777


Q ss_pred             hHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhcccccc
Q 011416          402 VSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFET  472 (486)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (486)
                      .......|.+++++++.+.++.+....++..++|.+.+.+.+..+|...+.+.+++.++..+......||+
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~  186 (394)
T PRK11652        116 MARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPET  186 (394)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            77788888888889999999999999999999999999999988999888887776665555444444454

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.49  E-value=1.3e-12  Score=124.40  Aligned_cols=152  Identities=13%  Similarity=0.025  Sum_probs=130.3

Q ss_pred             ccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhh
Q 011416          322 FSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFT  401 (486)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (486)
                      ++++.+....+...+.+.++..++.++.|+++||+|||+++..+..+.+++.+.....++.+.+.+.-++.|++.+...+
T Consensus        44 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~  123 (413)
T PRK15403         44 RDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIAT  123 (413)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence            45678888999999999999999999999999999999999999988888888887777877777777888887766666


Q ss_pred             hHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhccccccc
Q 011416          402 VSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETK  473 (486)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (486)
                      .......|.+|++++++++++.+....++..++|.+.+.+.+..||...|++.+++.+++.+..+...||++
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~  195 (413)
T PRK15403        124 VGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETV  195 (413)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            677888899999999999999999999999999999999998889999999888887777666555555543

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.49  E-value=2.8e-12  Score=121.76  Aligned_cols=149  Identities=8%  Similarity=-0.111  Sum_probs=127.7

Q ss_pred             ccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhh
Q 011416          322 FSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFT  401 (486)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (486)
                      ++.|.+..+.++......+...+..++.|+++||+|||+.+..+..+.+++.+.+...++.+...+..++.+++.+...+
T Consensus        39 ~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~  118 (400)
T PRK11646         39 DQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDP  118 (400)
T ss_pred             HHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence            34578999999999999999999999999999999999999999999999888888777777777777778888777788


Q ss_pred             hHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhccccc
Q 011416          402 VSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFE  471 (486)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  471 (486)
                      ...+++.+..|+++|++++|+.+...++|..++|.+.|.+. ..++...+++.+.+.++..++.....++
T Consensus       119 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~  187 (400)
T PRK11646        119 PRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPA  187 (400)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            88899999999999999999999999999999999999998 6688888888777766665554444443

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.49  E-value=1.4e-12  Score=125.50  Aligned_cols=160  Identities=15%  Similarity=0.105  Sum_probs=133.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHH
Q 011416          285 TILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITI  364 (486)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~  364 (486)
                      ....++.++......+......+.+.           ++.|.++.+.++..+...++..++.++.|+++||+|||+.+..
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~i~-----------~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~   88 (426)
T PRK12307         20 LFSAWLGYVFDGFDFMLIFYIMYLIK-----------ADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMW   88 (426)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHH-----------HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHH
Confidence            44444444444444444444445333           4567888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 011416          365 MFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVAN  444 (486)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~  444 (486)
                      +.++.+++.+.....++.+...+.-++.|++.+..++....++.|.+|+++|+++.++......+|..+++.+.+.+.+.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~  168 (426)
T PRK12307         89 SIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEA  168 (426)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHccc
Confidence            99999998888888888888888888899999989999999999999999999999999999999999999999988888


Q ss_pred             hccchHHHHHH
Q 011416          445 CHQMTAVVLLV  455 (486)
Q Consensus       445 ~g~~~~~~~~~  455 (486)
                      .+|...+++..
T Consensus       169 ~~w~~~f~i~~  179 (426)
T PRK12307        169 YGWRAAFFVGL  179 (426)
T ss_pred             CCHHHHHHHHH
Confidence            88888887644

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.49  E-value=2.6e-13  Score=130.90  Aligned_cols=159  Identities=11%  Similarity=0.075  Sum_probs=126.6

Q ss_pred             HHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhh--cchHHHHH--HHHHHHHhhhhhhcC
Q 011416           35 VAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNY--GRRMGFLG--EALVTAGAGLLSSFS  110 (486)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~--G~r~~~~~--~~~~~~~~~~~~~~a  110 (486)
                      ++...........+|.+.+++|.+..+.+++.++..++..+++++.|+++||.  ++|+...+  +.++.+++.++...+
T Consensus       251 ~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~  330 (455)
T TIGR00892       251 VIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALA  330 (455)
T ss_pred             HHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33333333334455667778899999999999999999999999999999983  34443333  344445555666778


Q ss_pred             CCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CcHHHHHHhHHHH
Q 011416          111 PNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRL-DWRWLLGLSSIPS  188 (486)
Q Consensus       111 ~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~-~w~~~f~~~~~~~  188 (486)
                      +|++.+++.+++.|++.+.. +...+++.|.+|++++++.+|+++...++|.++||.+++.+.+.. +|+..|++.+++.
T Consensus       331 ~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~  410 (455)
T TIGR00892       331 GDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIV  410 (455)
T ss_pred             chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHH
Confidence            89999999999999998887 666788889999999999999999999999999999999998877 5999999988776


Q ss_pred             HHHHH
Q 011416          189 FILLA  193 (486)
Q Consensus       189 ~~~~~  193 (486)
                      ++..+
T Consensus       411 li~~~  415 (455)
T TIGR00892       411 VSAGL  415 (455)
T ss_pred             HHHHH
Confidence            65443

>TIGR00897 2A0118 polyol permease family

Probab=99.48  E-value=1.2e-12  Score=124.56  Aligned_cols=163  Identities=13%  Similarity=0.100  Sum_probs=124.6

Q ss_pred             HHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHH-HHHHHHHHhhhhhh----
Q 011416           34 WVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFL-GEALVTAGAGLLSS----  108 (486)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~-~~~~~~~~~~~~~~----  108 (486)
                      .+.............|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.+. .+.+..+++.+...    
T Consensus       231 ~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~  310 (402)
T TIGR00897       231 RIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQ  310 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444555678888889999999999999999999999999999999999988764 33333333332222    


Q ss_pred             -cCCCHHHHHHHHHHHHhccCcchhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHhHHH
Q 011416          109 -FSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIP  187 (486)
Q Consensus       109 -~a~~~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~f~~~~~~  187 (486)
                       ..++++.+++..++.|++.+...+....+.|. +|++|+++.|+.+....+|..++|.+++.+.+..||+..+++.+++
T Consensus       311 ~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~  389 (402)
T TIGR00897       311 HFGHSFAVALIIAIALGIFLAGYVPLAAVFPTL-APKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAAL  389 (402)
T ss_pred             ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence             23567777888888998877663344555665 4578999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHhhc
Q 011416          188 SFILLAFLGF  197 (486)
Q Consensus       188 ~~~~~~~~~~  197 (486)
                      .++..+...+
T Consensus       390 ~~i~~~~~~~  399 (402)
T TIGR00897       390 YVVSAFLTAF  399 (402)
T ss_pred             HHHHHHHHHH
Confidence            7776555444

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.48  E-value=3e-12  Score=123.78  Aligned_cols=147  Identities=12%  Similarity=-0.011  Sum_probs=115.3

Q ss_pred             CCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhh----chhHHHHHHHHHHHHhhhhhh
Q 011416          325 HPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY----QSNILTTGLLFGARMCVMGAF  400 (486)
Q Consensus       325 ~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~  400 (486)
                      +.+..+.++..+...++..++.++.|+++||+|||+++.++.++.+++.+.+.+.    .+.+...+..++.+++.+...
T Consensus        59 g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~  138 (452)
T PRK11273         59 GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGW  138 (452)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccc
Confidence            7899999999999999999999999999999999999999988888877766653    244555666677788888777


Q ss_pred             hhHhhhccccccccchhhHhHHHHHHHHHHHHH-HHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhccccc
Q 011416          401 TVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMV-CPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFE  471 (486)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~-~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  471 (486)
                      +.....+.+.+|+++|++++|+.+....+|+.+ +|.+...+....+|...+++.+++.++..++.+++.++
T Consensus       139 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~  210 (452)
T PRK11273        139 PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRD  210 (452)
T ss_pred             hHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            877788889999999999999999998888654 55443333334478888888777776665555555444

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.48  E-value=1.5e-12  Score=123.12  Aligned_cols=150  Identities=16%  Similarity=0.133  Sum_probs=123.5

Q ss_pred             chhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHh
Q 011416           46 FVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGV  125 (486)
Q Consensus        46 ~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~  125 (486)
                      ..+|.+.++.|.+.++.|++.+...++..+++++.|++.||+|+|+++..+..+.+++.+...  + ........++.|+
T Consensus       221 ~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~  297 (381)
T PRK03633        221 GLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGA  297 (381)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHH
Confidence            346777777899999999999999999999999999999999999999888888777665443  2 2334456777887


Q ss_pred             ccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHhHHHHHHHHHHhhcc
Q 011416          126 GLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQ  198 (486)
Q Consensus       126 ~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~  198 (486)
                      +.... |...+++.|..|+++++...+......++|.++||.+++.+.++.+|++.|.+.+.+.++..+...+.
T Consensus       298 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~  371 (381)
T PRK03633        298 AGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLRK  371 (381)
T ss_pred             HHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHhc
Confidence            76655 77778888999988888888888889999999999999999999999999999888777665554443

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.47  E-value=9.2e-13  Score=124.64  Aligned_cols=151  Identities=15%  Similarity=0.045  Sum_probs=132.6

Q ss_pred             ccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhh
Q 011416          322 FSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFT  401 (486)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (486)
                      ++.|.++.+.+...+...++..++.++.|++.||+|||+.+..+.++.+++.+.+...++.+...+..++.+++.+...+
T Consensus        19 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~   98 (377)
T PRK11102         19 ADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASV   98 (377)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999988888888777777777778888888888888


Q ss_pred             hHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhcccccc
Q 011416          402 VSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFET  472 (486)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (486)
                      ...+++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..+|...+.+.+.+.++..+......+|+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (377)
T PRK11102         99 VINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPET  169 (377)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            89999999999999999999999999999999999999999988998888888877777766655555444

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.47  E-value=4.2e-13  Score=127.04  Aligned_cols=151  Identities=13%  Similarity=0.032  Sum_probs=130.7

Q ss_pred             ccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhh
Q 011416          322 FSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFT  401 (486)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (486)
                      ++.+.+..+.++..+...++..++.++.|+++||+|||+.+..+.++.+++.++....++.+...+..++.+++.+...+
T Consensus        23 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  102 (379)
T TIGR00881        23 EEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWP  102 (379)
T ss_pred             HHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCC
Confidence            34578999999999999999999999999999999999999999999999888888888888888888888998888899


Q ss_pred             hHhhhccccccccchhhHhHHHHHHHHHHHHHHH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHhcccccc
Q 011416          402 VSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCP-LVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFET  472 (486)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~-~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (486)
                      ...+++.|.+|+++|+++.++.+....+|..++| .+.+.+.+..+|...+.+.+.+.++..++.+...+++
T Consensus       103 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (379)
T TIGR00881       103 PCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDS  174 (379)
T ss_pred             chHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCC
Confidence            9999999999999999999999999999999999 4666677777888888888777776666665555443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.46  E-value=3e-12  Score=123.28  Aligned_cols=148  Identities=16%  Similarity=0.053  Sum_probs=120.4

Q ss_pred             CCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhh----chhHHHHHHHHHHHHhhhhh
Q 011416          324 HHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY----QSNILTTGLLFGARMCVMGA  399 (486)
Q Consensus       324 ~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  399 (486)
                      .|.++.+.++......++..++.++.|+++||+|||+.+..+.++.+++.+.....    .+.+...+..++.+++.+..
T Consensus        56 ~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~  135 (438)
T TIGR00712        56 QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMG  135 (438)
T ss_pred             cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcc
Confidence            47899999999999999999999999999999999999988888888777665542    23444455566777777777


Q ss_pred             hhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHH-hhccchHHHHHHHHHHHHHHHHhccccc
Q 011416          400 FTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVA-NCHQMTAVVLLVVVIVTSILSVMLIPFE  471 (486)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~  471 (486)
                      ++.....+.|.+|+++|++++|+.+...++++.++|.+.+...+ ..+|+..|++.+++.++..+..+++.+|
T Consensus       136 ~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~  208 (438)
T TIGR00712       136 WPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRD  208 (438)
T ss_pred             hHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccC
Confidence            78888888999999999999999999999999999988776554 4688888888888877766655555444

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.46  E-value=5.5e-12  Score=118.85  Aligned_cols=170  Identities=17%  Similarity=0.170  Sum_probs=127.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHH
Q 011416          288 LWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFT  367 (486)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~  367 (486)
                      .+...+......+....+.|.+.          .++.|.++.+.++......++..++.++.|+++||+|||+.+.++.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~   75 (366)
T TIGR00886         6 SWFGFFLSFSVWFAFSPLAVQMI----------KDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLL   75 (366)
T ss_pred             HHHHHHHHHHHHHHhHHhhhHHH----------HHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence            44444444555555555555311          24568999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhc-hhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHh--
Q 011416          368 LSCLFLLPLVTYQ-SNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVAN--  444 (486)
Q Consensus       368 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~--  444 (486)
                      +.+++.+.+...+ +.+...+..++.|++.+ ..+....++.|.+|+++|+.+.++.....++|..+++.+.+.+.+.  
T Consensus        76 ~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~  154 (366)
T TIGR00886        76 LLAIPCLWAGLAVQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLI  154 (366)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            9999888887776 77777777777777644 4566778899999999999999999988888888888887776653  


Q ss_pred             --------hccchHH-HHHHHHHHHHHHHHhcc
Q 011416          445 --------CHQMTAV-VLLVVVIVTSILSVMLI  468 (486)
Q Consensus       445 --------~g~~~~~-~~~~~~~~~~~~~~~~~  468 (486)
                              .+|...+ +..+.+..+..++.+..
T Consensus       155 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  187 (366)
T TIGR00886       155 FGAGLPAHLAWGWAFVIVPAGILLLPALLIFFV  187 (366)
T ss_pred             hcccccccccccchhHHHHHHHHHHHHHHHHHh
Confidence                    2677777 33344444444444333

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.45  E-value=3.3e-12  Score=119.19  Aligned_cols=151  Identities=9%  Similarity=-0.072  Sum_probs=120.9

Q ss_pred             ccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhh
Q 011416          322 FSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFT  401 (486)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (486)
                      ++++.++.+.++..+...++..++.+..|+++||+|||+++.........+.+.....++...+.+.-++.|++.+. ..
T Consensus        19 ~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~~~-~~   97 (368)
T TIGR00903        19 EDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALGQPF-LL   97 (368)
T ss_pred             HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhHhHH-HH
Confidence            45678999999999999999999999999999999999877655544444333222235666777777788888775 45


Q ss_pred             hHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhccccccc
Q 011416          402 VSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETK  473 (486)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (486)
                      .......|.+|+++|+++.++.+....+|..+++.+.+.+.+..||+..|.+.+++.++..++.++..||.+
T Consensus        98 ~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p  169 (368)
T TIGR00903        98 NAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALP  169 (368)
T ss_pred             HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            555566899999999999999999999999999999999999999999999988888777776666666543

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.45  E-value=3.1e-12  Score=121.28  Aligned_cols=163  Identities=15%  Similarity=0.069  Sum_probs=124.5

Q ss_pred             hhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcCC-CHHHHH
Q 011416           39 MEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSP-NYITLI  117 (486)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a~-~~~~l~  117 (486)
                      ..........|.+.+++|.+..+.|...+.+.++..++.++.|++.||+|||+.+..+..+.+++..+....+ +...+ 
T Consensus       219 ~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-  297 (393)
T PRK09705        219 GGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL-  297 (393)
T ss_pred             HHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH-
Confidence            3334444556666677899999999999999999999999999999999999999998888777776554333 33222 


Q ss_pred             HHHHHHHhccCcc-hhhhhhhccccC-CCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-cHHHHHHhHHHHHHHHH-
Q 011416          118 TLRCLVGVGLGSG-HVFLSWFLEFVP-PSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLD-WRWLLGLSSIPSFILLA-  193 (486)
Q Consensus       118 ~~r~l~G~~~~~~-~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~-w~~~f~~~~~~~~~~~~-  193 (486)
                       .-++.|++.+.. +.......+..+ ++++++..|+.+....++..++|.+.+++.+..| |+..|++.++..++..+ 
T Consensus       298 -~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~  376 (393)
T PRK09705        298 -WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMII  376 (393)
T ss_pred             -HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Confidence             234668887776 655555666664 5789999999999999999999999999999875 88888887776666543 


Q ss_pred             HhhccCCCch
Q 011416          194 FLGFQPESPR  203 (486)
Q Consensus       194 ~~~~~~e~~~  203 (486)
                      ...+.||++.
T Consensus       377 ~~~~~~~~~~  386 (393)
T PRK09705        377 TLRFAPARFP  386 (393)
T ss_pred             HHHhcccccc
Confidence            3555676643

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.45  E-value=4.9e-12  Score=122.37  Aligned_cols=170  Identities=11%  Similarity=-0.004  Sum_probs=135.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHH-hchhHH
Q 011416          283 RTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDT-AGRKLS  361 (486)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr-~g~~~~  361 (486)
                      +.++..+...+...+.+|+...+.+.+.+          ++.|.+..++......+.....+..+++|+++|| +|||+.
T Consensus        14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~----------~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~   83 (489)
T PRK10207         14 RPFFMIFFVELWERFGYYGVQGILAVFFV----------KQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRT   83 (489)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHH
Confidence            45555666667777888888777776542          3457888888888888887778888899999999 999999


Q ss_pred             HHHHHHHHHHHHHHHhhhchhH-HHHHHHHHHHHhhhhhhhhHhhhccccccccc--hhhHhHHHHHHHHHHHHHHHHHH
Q 011416          362 ITIMFTLSCLFLLPLVTYQSNI-LTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV--RSTGAGAANAMGRIGGMVCPLVA  438 (486)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~g~~~~~~i~  438 (486)
                      +.++.++.+++.+.+....+.. ...+...+.+++.+...|...+++.|.+|+++  |+.++++.+...++|..++|.+.
T Consensus        84 ~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~  163 (489)
T PRK10207         84 IVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLA  163 (489)
T ss_pred             HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHH
Confidence            9999999999888877754422 34455667788888888999999999998774  57789999999999999999999


Q ss_pred             HHHHHhhccchHHHHHHHHHHHHH
Q 011416          439 VALVANCHQMTAVVLLVVVIVTSI  462 (486)
Q Consensus       439 g~l~~~~g~~~~~~~~~~~~~~~~  462 (486)
                      |++.++.||+..|++.++..+++.
T Consensus       164 g~l~~~~gw~~~F~i~~i~~~~~~  187 (489)
T PRK10207        164 PVIADKFGYSVTYNLCGAGLIIAL  187 (489)
T ss_pred             HHHHHhhChHHHHHHHHHHHHHHH
Confidence            999999999988887655444333

>PRK11043 putative transporter; Provisional

Probab=99.45  E-value=7.3e-12  Score=119.46  Aligned_cols=148  Identities=16%  Similarity=0.101  Sum_probs=126.5

Q ss_pred             ccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhh
Q 011416          322 FSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFT  401 (486)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (486)
                      ++.+.++.+.++..+...++..++.++.|+++||+|||+.+..+..+..++.+.....++.+...+..++.|++.+...+
T Consensus        34 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~  113 (401)
T PRK11043         34 ADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAV  113 (401)
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHH
Confidence            45678999999999999999999999999999999999999998888888877777777777777777777777777777


Q ss_pred             hHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhccc
Q 011416          402 VSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIP  469 (486)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  469 (486)
                      ...+...|.+|+++++...+..+....++..++|.+.+.+.+..+|+..+++.+++.++..+..+...
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  181 (401)
T PRK11043        114 IWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLK  181 (401)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcC
Confidence            77888899999998999999999889999999999999999999999888888877777666555444

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=99.45  E-value=6.1e-12  Score=115.69  Aligned_cols=146  Identities=12%  Similarity=0.097  Sum_probs=128.6

Q ss_pred             CCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhH
Q 011416          324 HHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVS  403 (486)
Q Consensus       324 ~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (486)
                      .+..+..-|......-.+.++..++.+++.+|+|+-+++.+++...++-++.+....++|....+-++-++..+..+...
T Consensus       401 ~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~  480 (618)
T KOG3762|consen  401 LGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAI  480 (618)
T ss_pred             cCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHH
Confidence            34555566666777778888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccccccccchhhHhHHHHHHH-HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhccc
Q 011416          404 LIYAAEIYPTSVRSTGAGAANAMG-RIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIP  469 (486)
Q Consensus       404 ~~~~~~~~~~~~~~~~~g~~~~~~-~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  469 (486)
                      .++++...|++.++++.|+..... .+|-.+|.+++|.+.+.++....|.++++.+++.+++...+.
T Consensus       481 ~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq  547 (618)
T KOG3762|consen  481 ISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISIQ  547 (618)
T ss_pred             HHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999987765 599999999999999999999999999888887776655543

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.44  E-value=9.4e-12  Score=121.11  Aligned_cols=170  Identities=12%  Similarity=-0.027  Sum_probs=127.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHH-hchhHHH
Q 011416          284 TTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDT-AGRKLSI  362 (486)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr-~g~~~~~  362 (486)
                      .++..+...++..+.+|....+.+.+.          .++.|.+..+++..............+++|+++|| +|||+.+
T Consensus        22 ~~~~~~~~~~~~~~~~y~~~~~l~~yl----------~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~   91 (500)
T PRK09584         22 AFYLIFSIELWERFGYYGLQGIMAVYL----------VKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVI   91 (500)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHH
Confidence            345555666667777777777766554          23467888877777766655555556789999999 5999999


Q ss_pred             HHHHHHHHHHHHHHhhhc-hhHHHHHHHHHHHHhhhhhhhhHhhhccccccccc--hhhHhHHHHHHHHHHHHHHHHHHH
Q 011416          363 TIMFTLSCLFLLPLVTYQ-SNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV--RSTGAGAANAMGRIGGMVCPLVAV  439 (486)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~g~~~~~~i~g  439 (486)
                      ..+.++.+++..++.+.. +.+...+...+.+++.+...+...++..|.+|++.  ++.+.++.+...++|..++|.+.|
T Consensus        92 ~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g  171 (500)
T PRK09584         92 MLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATP  171 (500)
T ss_pred             HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHH
Confidence            999999888877776643 33444455566778877778888889999997643  456788889999999999999999


Q ss_pred             HHHHhhccchHHHHHHHHHHHHHH
Q 011416          440 ALVANCHQMTAVVLLVVVIVTSIL  463 (486)
Q Consensus       440 ~l~~~~g~~~~~~~~~~~~~~~~~  463 (486)
                      ++.+..||+..|.+.++..+++.+
T Consensus       172 ~l~~~~g~~~~F~i~~i~~~i~~i  195 (500)
T PRK09584        172 WLAAKYGWSVAFALSVVGMLITVV  195 (500)
T ss_pred             HHHHhhCHHHHHHHHHHHHHHHHH
Confidence            999999999988887765555443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.43  E-value=1.5e-12  Score=123.89  Aligned_cols=158  Identities=15%  Similarity=0.043  Sum_probs=120.4

Q ss_pred             HHHHHHHhhHhhhhchhchhh-hhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhh--hhhh
Q 011416           32 LGWVAEAMEIMILSFVGPTVK-SEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAG--LLSS  108 (486)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~--~~~~  108 (486)
                      ...+.............|.+. +++|.+..+.+.+.+...++..++.++.|+++||+|||+.+..+..+..+..  ....
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~  305 (394)
T TIGR00883       226 GLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMA  305 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444555566655 7789999999999999999999999999999999999998776554443332  2222


Q ss_pred             c--CCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHH-HHHHHHHHHHHHHHHHHHhcCCC-cHHHHHH
Q 011416          109 F--SPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIF-SSFWTIGSVSEAIGAWIIMPRLD-WRWLLGL  183 (486)
Q Consensus       109 ~--a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~G~~i~~~l~~~l~~~~~-w~~~f~~  183 (486)
                      +  .++.+.+.+..++.|++.+.. ++..+++.|.+|+++|+++.++. +.+..+|..++|.+++.+.++.| |+..++.
T Consensus       306 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~  385 (394)
T TIGR00883       306 LLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYY  385 (394)
T ss_pred             HhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHH
Confidence            2  356777778888889888777 77778999999999999999984 56667899999999999999888 9887776


Q ss_pred             hHHHHH
Q 011416          184 SSIPSF  189 (486)
Q Consensus       184 ~~~~~~  189 (486)
                      ..+..+
T Consensus       386 ~~~~~l  391 (394)
T TIGR00883       386 LAALAL  391 (394)
T ss_pred             HHHHHH
Confidence            655444

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.43  E-value=3.3e-12  Score=125.08  Aligned_cols=178  Identities=16%  Similarity=0.099  Sum_probs=132.5

Q ss_pred             HHHHHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhh
Q 011416           25 FVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAG  104 (486)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~  104 (486)
                      ..+....+..+.............|.+.+++|.+..+.++......++..++.++.|+++||+|||+.+..+.++.+++.
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~  363 (481)
T TIGR00879       284 RLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICL  363 (481)
T ss_pred             HHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            33344444444444444445566788888999999889999999999999999999999999999999999888888777


Q ss_pred             hhhhc-----CC------CHHHHHHHHHHH-HhccCcchhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011416          105 LLSSF-----SP------NYITLITLRCLV-GVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIM  172 (486)
Q Consensus       105 ~~~~~-----a~------~~~~l~~~r~l~-G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~  172 (486)
                      ++.++     .+      +...+....++. +.+.+..+....++.|.+|+++|++++++.+...++|.++++.+.+.+.
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~  443 (481)
T TIGR00879       364 FVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTML  443 (481)
T ss_pred             HHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66652     12      222233333332 3333333555667789999999999999999999999999999999998


Q ss_pred             cCCCcHHHHHHhHHHHHHHHHH-hhccCCCc
Q 011416          173 PRLDWRWLLGLSSIPSFILLAF-LGFQPESP  202 (486)
Q Consensus       173 ~~~~w~~~f~~~~~~~~~~~~~-~~~~~e~~  202 (486)
                      ++.+|++.|++.++++++..+. .++.||++
T Consensus       444 ~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~  474 (481)
T TIGR00879       444 ESIGVGGVFIFFGGLNVLGLIFVYFFLPETK  474 (481)
T ss_pred             HhcCccceehhHHHHHHHHHHHHheecccCC
Confidence            8899999999988887776554 44456543

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.42  E-value=1.7e-13  Score=123.90  Aligned_cols=158  Identities=15%  Similarity=-0.028  Sum_probs=143.9

Q ss_pred             cCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhh
Q 011416          323 SHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTV  402 (486)
Q Consensus       323 ~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (486)
                      .++.++...+++.....+...+.++++|++.||++|++++.+|..+-.++.+...+....|.+.+.=.+.|++.....|+
T Consensus        62 ~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~i  141 (493)
T KOG1330|consen   62 YFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPI  141 (493)
T ss_pred             hcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhccc
Confidence            35788999999999999999999999999999999999999999999999999888888999999999999999999999


Q ss_pred             HhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHHHHhcccccccCCCcccc
Q 011416          403 SLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH-QMTAVVLLVVVIVTSILSVMLIPFETKGQELSDT  480 (486)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  480 (486)
                      .+++++|.+|.++|++.+++.+.....|+.+|-...+.+.+..+ |+.++...+++.++++++..++.+|++++..++.
T Consensus       142 a~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~  220 (493)
T KOG1330|consen  142 APSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEV  220 (493)
T ss_pred             chhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCccccccccc
Confidence            99999999999999999999999999999999888888888777 8999999999999999999888877765444433

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.41  E-value=2.1e-12  Score=103.30  Aligned_cols=135  Identities=16%  Similarity=0.146  Sum_probs=115.9

Q ss_pred             HHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccch
Q 011416          337 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVR  416 (486)
Q Consensus       337 ~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (486)
                      ...++.+++.++.+++.||+|||+.+..+.....++.+.....++.+......++.+++.+...+....+..|..|+++|
T Consensus         6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   85 (141)
T TIGR00880         6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEER   85 (141)
T ss_pred             eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhh
Confidence            44677888999999999999999999988888888877777667777777778888888888889999999999999999


Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhccccc
Q 011416          417 STGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFE  471 (486)
Q Consensus       417 ~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  471 (486)
                      +++.++.+....++..++|.+.+.+.+..++...+.+.+.+.+++.+..+...+|
T Consensus        86 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        86 GVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             hHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            9999999999999999999999999988888888888887777777666665543

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.41  E-value=4.9e-11  Score=112.38  Aligned_cols=148  Identities=12%  Similarity=0.073  Sum_probs=117.0

Q ss_pred             cCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhh-----chhHHHHHHHHHHHHhhh
Q 011416          323 SHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY-----QSNILTTGLLFGARMCVM  397 (486)
Q Consensus       323 ~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~  397 (486)
                      ++++++.+.++..+...+...+.++..|++.||+|.|+++.++.++..+..+...+.     ++.+.+.+.-++.|++ +
T Consensus        64 ~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g  142 (462)
T PRK15034         64 GFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-G  142 (462)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-H
Confidence            578999999999999999999999999999999999999999998888888777764     6777777888888886 7


Q ss_pred             hhhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHH-----Hhhc-------------cchHHHHHHHHHH
Q 011416          398 GAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALV-----ANCH-------------QMTAVVLLVVVIV  459 (486)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~-----~~~g-------------~~~~~~~~~~~~~  459 (486)
                      ..++.....+++.+|+++||++.|+....+++|..+++.+.+.+.     +..|             ++.+.++...+.+
T Consensus       143 ~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~i  222 (462)
T PRK15034        143 ANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLA  222 (462)
T ss_pred             HhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHH
Confidence            788889999999999999999999998777777776666555433     3222             4445556666666


Q ss_pred             HHHHHHhccccc
Q 011416          460 TSILSVMLIPFE  471 (486)
Q Consensus       460 ~~~~~~~~~~~~  471 (486)
                      +..++.++..++
T Consensus       223 v~~i~~~~~~~~  234 (462)
T PRK15034        223 IATIAAWSGMND  234 (462)
T ss_pred             HHHHHHHHhCCC
Confidence            666666655443

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.41  E-value=1.3e-11  Score=110.93  Aligned_cols=179  Identities=16%  Similarity=0.035  Sum_probs=140.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhch
Q 011416          279 SKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGR  358 (486)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~  358 (486)
                      +...+.++.............+......+.+.           +++++|+.+.+++.....+.+.+.++..|.+.||+|.
T Consensus        10 ~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~-----------~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGg   78 (417)
T COG2223          10 RIARRNLWLSTLAFDVGFMVWTLFSPLGVFIK-----------SDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGG   78 (417)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----------cccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCc
Confidence            44444444444444444444444444444332           5779999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHhhhch---hHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHH
Q 011416          359 KLSITIMFTLSCLFLLPLVTYQS---NILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCP  435 (486)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~  435 (486)
                      |++...+.++..+-.+...+...   .+..+++-++.|++ ++.+.+....+++.+|+|++|.++|+.. .+|+|..+..
T Consensus        79 R~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q  156 (417)
T COG2223          79 RKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQ  156 (417)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHH
Confidence            99999999998887777766332   23555555555554 6778899999999999999999999999 9999999999


Q ss_pred             HHHHHHHHhhc---cchHHHHHHHHHHHHHHHHhcccc
Q 011416          436 LVAVALVANCH---QMTAVVLLVVVIVTSILSVMLIPF  470 (486)
Q Consensus       436 ~i~g~l~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~  470 (486)
                      ++.+.+....+   |+....+.....++..+..++..+
T Consensus       157 ~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~  194 (417)
T COG2223         157 LVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMN  194 (417)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999888   888888888888888887777654

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.41  E-value=4e-11  Score=116.68  Aligned_cols=154  Identities=13%  Similarity=0.099  Sum_probs=119.8

Q ss_pred             hhchhhhhcCCCcchhHHHHH-HHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhh---hhcC-CCHHHHHHHHH
Q 011416           47 VGPTVKSEWNLSSTEESLITT-SVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLL---SSFS-PNYITLITLRC  121 (486)
Q Consensus        47 ~~~~~~~~~~~s~~~~g~~~s-~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~---~~~a-~~~~~l~~~r~  121 (486)
                      ..|.+.+++|.+..+.+++.+ ...++..++.+++|+++||+|+|+.+.++.++.+++.++   .+.. ++.+.+.+.-+
T Consensus       245 ~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~  324 (491)
T PRK11010        245 TTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVF  324 (491)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence            345556779999999999974 666899999999999999999999887766655554432   2333 45555555666


Q ss_pred             HHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHhHHHHHHHHHHhhccCC
Q 011416          122 LVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPE  200 (486)
Q Consensus       122 l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~e  200 (486)
                      +..++.|.. ....++..+..+++.+++..++.+...++|..+++.+.|.+.+..||+..|.+.++++++.++...++++
T Consensus       325 l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~  404 (491)
T PRK11010        325 FENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQ  404 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHh
Confidence            655555544 4556778889999999999999999999999999999999999999999999988888887666555544

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.41  E-value=5.1e-12  Score=119.52  Aligned_cols=146  Identities=10%  Similarity=-0.076  Sum_probs=122.7

Q ss_pred             hhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHhc
Q 011416           47 VGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVG  126 (486)
Q Consensus        47 ~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~  126 (486)
                      ..|.+.+|.|.+..+.|.+.+...++..+..++.|++.||+|+|+.+..+.++.+++.++.+++++.+.+++..++.|++
T Consensus       227 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~  306 (382)
T PRK11128        227 FSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGT  306 (382)
T ss_pred             HHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            34555577999999999999999999999999999999999999999999999999888888899999999999999999


Q ss_pred             cCcc-hhhhhhhccccCCCchhHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCcHHHHHHhHHHHHHHHHH
Q 011416          127 LGSG-HVFLSWFLEFVPPSNRGMWMVIFS-SFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAF  194 (486)
Q Consensus       127 ~~~~-~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~i~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~  194 (486)
                      .+.. +....++.+. +++++++..+... ...++|..+||.++|.+.+..|+ ..|+..+++.++.++.
T Consensus       307 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T PRK11128        307 FTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPALFI  374 (382)
T ss_pred             HHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            8877 6666777776 5667788888886 55678889999999999999998 4666666666554433

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.40  E-value=6.4e-12  Score=107.92  Aligned_cols=177  Identities=17%  Similarity=0.080  Sum_probs=133.8

Q ss_pred             HHHHHHHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHH
Q 011416           23 QCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAG  102 (486)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~  102 (486)
                      ||..+....... ......+.++..-|++++++|+|.+|...+.++..+|..+ +++.|.+.||+|++.++.+|.+...+
T Consensus         1 rW~~l~a~~~v~-~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~   78 (250)
T PF06813_consen    1 RWLSLVASIWVQ-LCSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFV   78 (250)
T ss_pred             ChhhHHHHHHHH-HhcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            455544444433 4445677888889999999999999999999999999987 58899999999999999999999999


Q ss_pred             hhhhhhcC-------CCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 011416          103 AGLLSSFS-------PNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPR  174 (486)
Q Consensus       103 ~~~~~~~a-------~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~  174 (486)
                      |..+...+       .++|.+.+..++.|.+.+.. ........+.+| ++||++.|+.-...+++..+-..+...+.+.
T Consensus        79 GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~  157 (250)
T PF06813_consen   79 GYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD  157 (250)
T ss_pred             HHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence            98877553       46888888888888887766 555555668886 6899999999999999998887777776655


Q ss_pred             CCcHHHHHHhHHHHHHHHHHhhccCCCc
Q 011416          175 LDWRWLLGLSSIPSFILLAFLGFQPESP  202 (486)
Q Consensus       175 ~~w~~~f~~~~~~~~~~~~~~~~~~e~~  202 (486)
                      -.-+..+.....+.++.++...+++..|
T Consensus       158 ~~~~fll~la~~~~~v~l~~~~~vr~~~  185 (250)
T PF06813_consen  158 DPSSFLLFLAVLPAVVCLVAMFFVRPVP  185 (250)
T ss_pred             ChHHHHHHHHHHHHHHHHHHhhheeccC
Confidence            3344444333334444455555554443

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.39  E-value=9.9e-12  Score=119.96  Aligned_cols=151  Identities=16%  Similarity=0.089  Sum_probs=134.3

Q ss_pred             hhchhchhh-hhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHH
Q 011416           44 LSFVGPTVK-SEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCL  122 (486)
Q Consensus        44 ~~~~~~~~~-~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r~l  122 (486)
                      +...+|.+. +++|.+....|++.+++.+|..++++..+++.+|+++++.+..+.++.+++.+..+++++.+..++..++
T Consensus       237 ~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l  316 (524)
T PF05977_consen  237 VWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFL  316 (524)
T ss_pred             HHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            334567665 5689999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHhHHHHHHHHHH
Q 011416          123 VGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAF  194 (486)
Q Consensus       123 ~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~  194 (486)
                      .|++.... ....+.+.+..|++.|||++++++.....+..+|..+.|.+.+..|.+..+.+.++..++..++
T Consensus       317 ~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~  389 (524)
T PF05977_consen  317 AGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALI  389 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence            99998877 5666788899999999999999999999999999999999999999999998877655554433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.39  E-value=8.8e-12  Score=121.28  Aligned_cols=149  Identities=13%  Similarity=-0.055  Sum_probs=128.1

Q ss_pred             cCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhh--hchhHHHHHHHHHHHHhhhhhh
Q 011416          323 SHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT--YQSNILTTGLLFGARMCVMGAF  400 (486)
Q Consensus       323 ~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  400 (486)
                      +++.+..+.+.....+.++.+++.++.|++.||+|+|+.+..+.++..++.++...  ..+.+..++.-++.|++.+...
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~  149 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVS  149 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccch
Confidence            56888999999999999999999999999999999999999988887777666543  2345566777788899999999


Q ss_pred             hhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHhccccc
Q 011416          401 TVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANC-HQMTAVVLLVVVIVTSILSVMLIPFE  471 (486)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~  471 (486)
                      +....++.|.+|+++|++++|+.+....+|..++|.+.+.+.+.. +|+..|.+.+++.++..++.+.+.++
T Consensus       150 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~  221 (465)
T TIGR00894       150 PATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPAD  221 (465)
T ss_pred             hhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999884 99999998888777766665555433

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.39  E-value=2.2e-11  Score=115.41  Aligned_cols=135  Identities=11%  Similarity=-0.029  Sum_probs=110.3

Q ss_pred             cCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhh
Q 011416          323 SHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTV  402 (486)
Q Consensus       323 ~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (486)
                      +.+.++...++....+.+...+..++.|++.||+|||+++..+..+.+++.+.+....+.   .+..++.|++.+...|.
T Consensus        32 ~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa  108 (393)
T PRK11195         32 ELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPA  108 (393)
T ss_pred             HcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence            346777888999999999999999999999999999999999998887766665544333   34456778888999999


Q ss_pred             HhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH
Q 011416          403 SLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTS  461 (486)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~  461 (486)
                      ..+++.|.+|+++|++++|+.+....++..+||.+.|.+.+.. +...+.+.+.+.+++
T Consensus       109 ~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i~~~~~~~~  166 (393)
T PRK11195        109 KYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH-AEAALAVCALIYLLA  166 (393)
T ss_pred             HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998864 444444444443333

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.38  E-value=3.3e-11  Score=117.97  Aligned_cols=160  Identities=14%  Similarity=0.033  Sum_probs=119.6

Q ss_pred             hhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcC--CC-HH-HHHH
Q 011416           43 ILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFS--PN-YI-TLIT  118 (486)
Q Consensus        43 ~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a--~~-~~-~l~~  118 (486)
                      ......|.+.++.|.+..+.++......+...++.++.|+++||+|||++++.+..+.+++.++.+..  ++ .+ ....
T Consensus       289 ~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~  368 (479)
T PRK10077        289 VVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALL  368 (479)
T ss_pred             HHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHH
Confidence            33445688888899988888888888888999999999999999999999999999988887766533  12 11 2223


Q ss_pred             HHHHHHhccCcc--hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHH------hcCCCcHHHHHHhHHHHHH
Q 011416          119 LRCLVGVGLGSG--HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWII------MPRLDWRWLLGLSSIPSFI  190 (486)
Q Consensus       119 ~r~l~G~~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l------~~~~~w~~~f~~~~~~~~~  190 (486)
                      +.++.+++.+..  +....++.|.+|+++|++++|+......+|.++++.+.+.+      .+..+|+..|++.++.+++
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (479)
T PRK10077        369 SMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVL  448 (479)
T ss_pred             HHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHH
Confidence            344444444332  55678899999999999999999999999998886655543      3578899999888877666


Q ss_pred             HHHH-hhccCCCc
Q 011416          191 LLAF-LGFQPESP  202 (486)
Q Consensus       191 ~~~~-~~~~~e~~  202 (486)
                      ..+. +++.||+.
T Consensus       449 ~~~~~~~~~~e~~  461 (479)
T PRK10077        449 AALFMWKFVPETK  461 (479)
T ss_pred             HHHHHHhccccCC
Confidence            5444 44556653

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.37  E-value=1.8e-11  Score=116.39  Aligned_cols=139  Identities=9%  Similarity=-0.005  Sum_probs=118.6

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHhccCcc-hhhh
Q 011416           56 NLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFL  134 (486)
Q Consensus        56 ~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~-~~~~  134 (486)
                      +.+..+.|.+.++..+...++.++.|++.||+|+|+.+.++..+.+++..+...++|.+.+++.+++.|++.+.. ....
T Consensus       250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  329 (396)
T TIGR00882       250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF  329 (396)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            556677899999999999999999999999999999999999999998888888899999999999999987655 3445


Q ss_pred             hhhccccCCCchhHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHhHHHHHHHHHH
Q 011416          135 SWFLEFVPPSNRGMWMVI-FSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAF  194 (486)
Q Consensus       135 ~~i~~~~~~~~r~~~~~~-~~~~~~~G~~i~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~  194 (486)
                      .+..+..+++.++...+. .+....+|..+++.+++.+.+..||+..|.+.+++.++..+.
T Consensus       330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~  390 (396)
T TIGR00882       330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLI  390 (396)
T ss_pred             HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            567777788878776665 678899999999999999999999999999988887775443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.36  E-value=5.5e-11  Score=112.99  Aligned_cols=169  Identities=15%  Similarity=0.049  Sum_probs=132.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHH
Q 011416          286 ILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIM  365 (486)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~  365 (486)
                      ..++..++...+.+.......|.+.           ++++.+..+.++..+...++..++.+..|++.||+|||+.+..+
T Consensus         6 ~~~~~~f~~~G~~~~~~~~l~~~~~-----------~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g   74 (410)
T TIGR00885         6 ALITSLFALWGFANDITNPMVPQFQ-----------QAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLG   74 (410)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHH-----------HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence            3444444444444444445555443           45689999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhh---hchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 011416          366 FTLSCLFLLPLVT---YQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALV  442 (486)
Q Consensus       366 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~  442 (486)
                      ..+.+++.+++..   .++.+......++.|++.+...+....++.+..|++++++..++.+...++|..++|.+.+.+.
T Consensus        75 ~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~  154 (410)
T TIGR00885        75 LFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI  154 (410)
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999888877543   3456667777788899999999998999999999999999999999999999999999998875


Q ss_pred             Hh--------------------------hccchHHHHHHHHHHHHHHHH
Q 011416          443 AN--------------------------CHQMTAVVLLVVVIVTSILSV  465 (486)
Q Consensus       443 ~~--------------------------~g~~~~~~~~~~~~~~~~~~~  465 (486)
                      ..                          .+|+.++.+.+++.++..++.
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~  203 (410)
T TIGR00885       155 LSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLI  203 (410)
T ss_pred             hcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            32                          346777777777666554443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK09952 shikimate transporter; Provisional

Probab=99.36  E-value=3.9e-11  Score=115.41  Aligned_cols=152  Identities=13%  Similarity=0.018  Sum_probs=112.9

Q ss_pred             hhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhc---C-CCHHHHHHHHHHHHh
Q 011416           50 TVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSF---S-PNYITLITLRCLVGV  125 (486)
Q Consensus        50 ~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~---a-~~~~~l~~~r~l~G~  125 (486)
                      .+.+++|.+..+...+.....+...++.++.|+++||+|||+++..+.++..++.+....   . ++.+.+++..++.|+
T Consensus       276 y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  355 (438)
T PRK09952        276 YSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANI  355 (438)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            445678888877666666677777888999999999999999998887766555433322   2 334455556677788


Q ss_pred             ccCcc-hhhhhhhccccCCCchhHHHHHHHH-HHHHHHHHHHHHHHHHhcCC--CcHHHHHHhHHHHHHHHHHhhccCCC
Q 011416          126 GLGSG-HVFLSWFLEFVPPSNRGMWMVIFSS-FWTIGSVSEAIGAWIIMPRL--DWRWLLGLSSIPSFILLAFLGFQPES  201 (486)
Q Consensus       126 ~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~i~~~l~~~l~~~~--~w~~~f~~~~~~~~~~~~~~~~~~e~  201 (486)
                      +.+.. +...+++.|.+|++.|+...++... +..+|..++|.+.+.+.+..  +|+..+...++..++..+..+.++|+
T Consensus       356 ~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~  435 (438)
T PRK09952        356 AHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDN  435 (438)
T ss_pred             HHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence            87766 6667889999999999988888554 45589999999999987743  58888887777777766665566654

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.36  E-value=5.2e-12  Score=111.89  Aligned_cols=154  Identities=16%  Similarity=0.073  Sum_probs=141.5

Q ss_pred             cCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhh
Q 011416          323 SHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTV  402 (486)
Q Consensus       323 ~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (486)
                      ..+.+..+.|+++....+.+++..++.|.+.||+|+|..+.+|++++....+++.+.++.+..++.=.+.|++.....+.
T Consensus       100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~ts  179 (464)
T KOG3764|consen  100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTS  179 (464)
T ss_pred             CccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhh
Confidence            44667788999999999999999999999999999999999999999999999999999998999999999999999999


Q ss_pred             Hhhhccccccccc-hhhHhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhcccccccCCC
Q 011416          403 SLIYAAEIYPTSV-RSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQE  476 (486)
Q Consensus       403 ~~~~~~~~~~~~~-~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (486)
                      ..+++++.+|++. |++++|+.-.+..+|..++|.++|.++|..|+..+|++++.++++-..+.++..+.++.++
T Consensus       180 glamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~  254 (464)
T KOG3764|consen  180 GLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDP  254 (464)
T ss_pred             hHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCc
Confidence            9999999999866 6999999999999999999999999999999999999999999999888887775544443

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.35  E-value=2.2e-11  Score=115.63  Aligned_cols=148  Identities=10%  Similarity=0.041  Sum_probs=112.7

Q ss_pred             hhchhhhhcCCCcchhHHHHHHHHH-HHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhh------cCCCHHHHHHH
Q 011416           47 VGPTVKSEWNLSSTEESLITTSVFA-GLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSS------FSPNYITLITL  119 (486)
Q Consensus        47 ~~~~~~~~~~~s~~~~g~~~s~~~~-~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~------~a~~~~~l~~~  119 (486)
                      ..+.+.+|.|++.+++|++.+.... ...++.++.|++.||+|+|+.+..+..+.++..+...      ..++...+...
T Consensus       230 ~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (390)
T TIGR02718       230 LSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSC  309 (390)
T ss_pred             HhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHH
Confidence            3455666789999999999888764 6667789999999999999999887766533322221      12344445555


Q ss_pred             HHHHHhccCcc-hhhhhhhccccCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHhHHHHHHHHHH
Q 011416          120 RCLVGVGLGSG-HVFLSWFLEFVPP-SNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAF  194 (486)
Q Consensus       120 r~l~G~~~~~~-~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~  194 (486)
                      ..+.+++.+.. +...+.+.+..++ +++++.+++.++..++|..++|.+++.+.+..||+..|++.+++.++..+.
T Consensus       310 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~  386 (390)
T TIGR02718       310 SAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAILL  386 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence            56666766666 5556666666665 889999999999999999999999999999999999999887776665443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.33  E-value=4.5e-11  Score=117.22  Aligned_cols=161  Identities=15%  Similarity=0.063  Sum_probs=110.2

Q ss_pred             hhhhchhchhhhhcCCCcchhHH------------HHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhc
Q 011416           42 MILSFVGPTVKSEWNLSSTEESL------------ITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSF  109 (486)
Q Consensus        42 ~~~~~~~~~~~~~~~~s~~~~g~------------~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~  109 (486)
                      .......|.+.++.|.+..+.+.            ...+..++..++.+++++++||+|||++++.+..+.+++..+.++
T Consensus       305 y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~  384 (502)
T TIGR00887       305 YGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGF  384 (502)
T ss_pred             HccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHH
Confidence            33444567777788876543221            233444566678889999999999999998888777776655554


Q ss_pred             CC----CHHHHHHHHHHHHh-ccCcchhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcC----------
Q 011416          110 SP----NYITLITLRCLVGV-GLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPR----------  174 (486)
Q Consensus       110 a~----~~~~l~~~r~l~G~-~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~----------  174 (486)
                      ..    +...+...-+...+ +.+..+....+..|.+|.+.|+++.|+.+....+|.++++.+.+.+.+.          
T Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  464 (502)
T TIGR00887       385 AYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTG  464 (502)
T ss_pred             HHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcccccccccccc
Confidence            31    11112211122222 2222345556778999999999999999999999999999999988773          


Q ss_pred             CCcHHHHHHhHHHHHHHHHHhhccCCCc
Q 011416          175 LDWRWLLGLSSIPSFILLAFLGFQPESP  202 (486)
Q Consensus       175 ~~w~~~f~~~~~~~~~~~~~~~~~~e~~  202 (486)
                      .++...|++.+++.++..+..+++||+.
T Consensus       465 ~~~~~~~~i~~~~~~~~~i~~~~lpEt~  492 (502)
T TIGR00887       465 IWMGHVLEIFALFMFLGILFTLLIPETK  492 (502)
T ss_pred             ccchHHHHHHHHHHHHHHHHheEeccCC
Confidence            3556778887777776655667778864

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.31  E-value=1.3e-10  Score=111.10  Aligned_cols=161  Identities=19%  Similarity=0.191  Sum_probs=137.2

Q ss_pred             HhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcch--HHHHHHHHHHHHhhhhhhc--------C
Q 011416           41 IMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRR--MGFLGEALVTAGAGLLSSF--------S  110 (486)
Q Consensus        41 ~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r--~~~~~~~~~~~~~~~~~~~--------a  110 (486)
                      ..........-.+++|++..+...+.-+..+...++++++|++.||+|.|  +++..+++++.+..+...+        .
T Consensus       298 ~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~  377 (477)
T PF11700_consen  298 NTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGL  377 (477)
T ss_pred             HHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCc
Confidence            34444555556679999999999999999999999999999999999999  8988888888665555444        6


Q ss_pred             CCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-cHHHHHHhHHHH
Q 011416          111 PNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLD-WRWLLGLSSIPS  188 (486)
Q Consensus       111 ~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~-w~~~f~~~~~~~  188 (486)
                      ++-+.+.+.-++.|+..|.. +...++.+|..|+++.+..+|++....-....+||++-+.+.+..| -|..+....++.
T Consensus       378 ~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf  457 (477)
T PF11700_consen  378 KSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLF  457 (477)
T ss_pred             ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence            78889999999999999998 7788999999999999999999999999999999999999988775 888888877777


Q ss_pred             HHHHHHhhccCCC
Q 011416          189 FILLAFLGFQPES  201 (486)
Q Consensus       189 ~~~~~~~~~~~e~  201 (486)
                      ++.+++..+++.+
T Consensus       458 ~~gl~ll~~v~~~  470 (477)
T PF11700_consen  458 LIGLILLFFVDVE  470 (477)
T ss_pred             HHHHHHHhhccch
Confidence            7777666666543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.29  E-value=1.7e-11  Score=108.08  Aligned_cols=128  Identities=13%  Similarity=0.023  Sum_probs=107.1

Q ss_pred             CCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhH
Q 011416          324 HHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVS  403 (486)
Q Consensus       324 ~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (486)
                      .+.+...+|...+.+++..++.++..|.++||+|||.++.++.+..++...+.+...+...++..=++.|++ -+...+.
T Consensus        63 ~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~-kgnl~v~  141 (451)
T KOG2615|consen   63 DGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIF-KGNLSVI  141 (451)
T ss_pred             ccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-cCchHHH
Confidence            345667889999999999999999999999999999999999999999888888777773333334555555 5566889


Q ss_pred             hhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHH---hhccchHHH
Q 011416          404 LIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVA---NCHQMTAVV  452 (486)
Q Consensus       404 ~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~---~~g~~~~~~  452 (486)
                      .++++|++++++|+.+++..+...++|-++||.++|++.+   ..|.+..++
T Consensus       142 rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~al  193 (451)
T KOG2615|consen  142 RAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFAL  193 (451)
T ss_pred             HHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHH
Confidence            9999999999999999999999999999999999999987   455443333

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=99.28  E-value=1.1e-08  Score=93.61  Aligned_cols=324  Identities=16%  Similarity=0.113  Sum_probs=181.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHhccCcc-hhhhhhhcccc
Q 011416           63 SLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFV  141 (486)
Q Consensus        63 g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~  141 (486)
                      +.+.-+-.+...+..+.+.+..+|+..+.=.....++..++.++.++++|.+.=+++-++.++++|.. .....+ +..+
T Consensus        62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~l-t~~y  140 (402)
T PF02487_consen   62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSL-THFY  140 (402)
T ss_pred             hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHH-HHhc
Confidence            44555666777778888889999988766667777788899999999999999899999999999988 544454 4455


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--cHHHHHHhHHHHHHHHHHhh-ccCCCchhhhhcCChHHHHHHH
Q 011416          142 PPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLD--WRWLLGLSSIPSFILLAFLG-FQPESPRYLCLKGRTAEAHRAL  218 (486)
Q Consensus       142 ~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~--w~~~f~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~  218 (486)
                      ++    ...+-+.++.+.+.++|+..-..+.+ .+  -|..+.+...+.++..+.++ .+|+++... ..++.++.    
T Consensus       141 ~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~~~~~~-~~~~~~~~----  210 (402)
T PF02487_consen  141 GK----SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPSPPTNR-PYQESESE----  210 (402)
T ss_pred             Cc----cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhccccccC-CCcccCCC----
Confidence            53    35678888888888888877666655 55  47777777666655544433 444332110 00000000    


Q ss_pred             HHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCCCCcccCCCchhhhHhhhc--hhhHHHHHHHHHHHHHHH
Q 011416          219 EKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFS--SKLARTTILLWLLLFGNS  296 (486)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~  296 (486)
                                 +          +.+++.        ... +..+.+.+......+++-++  ++..+.++.+...+++..
T Consensus       211 -----------~----------~~~~~~--------~~~-~~~~~~~~~~~~~~~~~k~~~~k~Ll~ymiPL~lVY~aEY  260 (402)
T PF02487_consen  211 -----------D----------EAEDDL--------LES-ETSESKPDSSSKLSFKEKLKRLKPLLWYMIPLFLVYFAEY  260 (402)
T ss_pred             -----------C----------cccccc--------ccc-ccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       0          000000        000 00000000000011111111  111112222333333333


Q ss_pred             HHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHH
Q 011416          297 FAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPL  376 (486)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~  376 (486)
                      +...++.   +.+.         ...........-.++...+.++.++++--...+  |+.+.+++.+...+-.+.++.-
T Consensus       261 ~InqGv~---~tl~---------fp~~~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--rir~lwils~LQ~~nl~~~~l~  326 (402)
T PF02487_consen  261 FINQGVA---PTLL---------FPNSFFSPRDQYRWYQLLYQLGVFISRSSLPFF--RIRRLWILSLLQVINLVFLLLQ  326 (402)
T ss_pred             HHHhchH---HHhc---------CCccCCCHHHHHHHHHHHHHHHHhhhhcceeee--ehhhHHHHHHHHHHHHHHHHHH
Confidence            3322222   2221         001111222333455566666666655432221  3333333322222222222222


Q ss_pred             h---hhchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHH
Q 011416          377 V---TYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVAL  441 (486)
Q Consensus       377 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l  441 (486)
                      .   +.++.|...+.++.-|+..|..+...+..+.|..++++|.-++|.....-.+|-.++..+.-++
T Consensus       327 s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  327 SWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            2   2456777777888888888888888888889999999999999999999888888887775443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.28  E-value=7.5e-09  Score=96.42  Aligned_cols=310  Identities=17%  Similarity=0.083  Sum_probs=188.7

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHhccCcchhhh-hhhccccCCC
Q 011416           66 TTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFL-SWFLEFVPPS  144 (486)
Q Consensus        66 ~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~-~~i~~~~~~~  144 (486)
                      .++-+..+.++.++.+.+.|+.|+|+.+.++......-.+.+-+ +|-+.+++.-.+.|+|.+...... .+++|...++
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~  134 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE  134 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence            77788888999999999999999999999999999887776666 456668889999999999885554 7999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------CcH-H----------HHHHhHHH---HHHHHHHhhccCCCc
Q 011416          145 NRGMWMVIFSSFWTIGSVSEAIGAWIIMPRL--------DWR-W----------LLGLSSIP---SFILLAFLGFQPESP  202 (486)
Q Consensus       145 ~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~--------~w~-~----------~f~~~~~~---~~~~~~~~~~~~e~~  202 (486)
                      .+.+..++..+....+.++|......+....        +-+ .          ...+.+++   ..+..+...+.|.+.
T Consensus       135 tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~~  214 (461)
T KOG3098|consen  135 TIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPSKD  214 (461)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCccc
Confidence            9999999999999998888876554432111        111 1          11111111   111112222222211


Q ss_pred             hhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCCCCcccCCCchhhhHhhhchhhH
Q 011416          203 RYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLA  282 (486)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  282 (486)
                      .. ..++..+                                                      ......++..++....
T Consensus       215 ~~-~~~~~~~------------------------------------------------------~~~~~~l~~~~~l~~~  239 (461)
T KOG3098|consen  215 VV-NCKSSSE------------------------------------------------------TSFSELLKLTFKLLKT  239 (461)
T ss_pred             hh-hhhhhcc------------------------------------------------------ccHHHHHHHHHHHhcC
Confidence            10 0000000                                                      0000012222222111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHH---hchh
Q 011416          283 RTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDT---AGRK  359 (486)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr---~g~~  359 (486)
                      ++++.+....+...+   ...+|...+.....    .-.....-+....++.....+++.+++....+.+.+|   +|++
T Consensus       240 ~~ml~L~~~f~~tG~---~~Sf~~~iypt~i~----ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~  312 (461)
T KOG3098|consen  240 PKMLLLFPFFFYTGL---ETSFWISIYPTCIS----FTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRK  312 (461)
T ss_pred             HhHHHHHHHHHHHHH---HHHHHHhccchhhh----hhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccC
Confidence            222222222221111   11112221111100    0001112233445666677788888888888888876   5778


Q ss_pred             HHHHHHHHHHHHHHHHHhhh------------------chhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhH
Q 011416          360 LSITIMFTLSCLFLLPLVTY------------------QSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAG  421 (486)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  421 (486)
                      +.+.++..+..+..++....                  ++.....+..++.|++-....+..+.++...+| +.|..+.+
T Consensus       313 ~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~-~~~~~~fs  391 (461)
T KOG3098|consen  313 PTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYP-DDRAQAFS  391 (461)
T ss_pred             cchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhc-CchHHHHH
Confidence            88887777777666665431                  123466677788889988899999999999994 66888888


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 011416          422 AANAMGRIGGMVCPLVAV  439 (486)
Q Consensus       422 ~~~~~~~~g~~~~~~i~g  439 (486)
                      +...-..++..++-+...
T Consensus       392 i~kfyq~~~s~v~~f~~~  409 (461)
T KOG3098|consen  392 LFKFYQSVASCVAFFFSP  409 (461)
T ss_pred             HHHHHHHHHHHHHhhhhh
Confidence            888888888777666654

>PRK10133 L-fucose transporter; Provisional

Probab=99.28  E-value=4.6e-10  Score=107.68  Aligned_cols=150  Identities=15%  Similarity=0.025  Sum_probs=123.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHH
Q 011416          282 ARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLS  361 (486)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~  361 (486)
                      ...+.....+++...+.........|.+.           ++++.++.+.++......++..++.++.|++.||+|||++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~p~i~-----------~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~   93 (438)
T PRK10133         25 IIPFALLCSLFFLWAVANNLNDILLPQFQ-----------QAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAG   93 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence            34455556666666666677777777654           4568999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh---hhchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHH
Q 011416          362 ITIMFTLSCLFLLPLV---TYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVA  438 (486)
Q Consensus       362 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~  438 (486)
                      +..+..+.+++.+++.   ..++.+.+.+..++.|++.+...+..+.++.+..|++++...+++.+....+|..++|.+.
T Consensus        94 l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g  173 (438)
T PRK10133         94 IITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFG  173 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998887653   3566777778888899999999999889888877777666678999999999999999987


Q ss_pred             HHHH
Q 011416          439 VALV  442 (486)
Q Consensus       439 g~l~  442 (486)
                      +.+.
T Consensus       174 ~~l~  177 (438)
T PRK10133        174 QSLI  177 (438)
T ss_pred             HHHH
Confidence            7654

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.27  E-value=4.7e-10  Score=107.91  Aligned_cols=129  Identities=20%  Similarity=0.097  Sum_probs=101.8

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchh--------HHHHHHHHHHHHhhhhhhhhHh
Q 011416          333 IDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSN--------ILTTGLLFGARMCVMGAFTVSL  404 (486)
Q Consensus       333 ~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~  404 (486)
                      .......++..++.++.|+++||+|||+.+..+.++.+++.+...+.++.        ..+.+.-++.|++.++.++...
T Consensus        67 ~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~  146 (432)
T PRK10406         67 GVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSA  146 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHH
Confidence            34445556666999999999999999999999999998888887764443        2455666788899999999999


Q ss_pred             hhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHH--------HhhccchHHHHHHHHHHHH
Q 011416          405 IYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALV--------ANCHQMTAVVLLVVVIVTS  461 (486)
Q Consensus       405 ~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~--------~~~g~~~~~~~~~~~~~~~  461 (486)
                      +++.|..|+++|+.+.++.......|..+++.+...+.        +..||+..|++.++..++.
T Consensus       147 ~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~  211 (432)
T PRK10406        147 TYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA  211 (432)
T ss_pred             HHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence            99999999999999999888777788787777655443        2468888888766655544

>PRK15075 citrate-proton symporter; Provisional

Probab=99.27  E-value=2.5e-10  Score=109.91  Aligned_cols=142  Identities=14%  Similarity=0.122  Sum_probs=102.0

Q ss_pred             HHhhHhhhhchhchhhh-hcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhh-h---hhcCC
Q 011416           37 EAMEIMILSFVGPTVKS-EWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGL-L---SSFSP  111 (486)
Q Consensus        37 ~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~-~---~~~a~  111 (486)
                      ............|.+.+ .+|.+..+.++....+.++..++.+++|+++||+|||+++..+..+..+... .   ....+
T Consensus       250 ~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~  329 (434)
T PRK15075        250 TTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAP  329 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            33334445555677655 4899999999999999999999999999999999999988876544432221 1   11234


Q ss_pred             CHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCcH
Q 011416          112 NYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSF-WTIGSVSEAIGAWIIMPRLDWR  178 (486)
Q Consensus       112 ~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~G~~i~~~l~~~l~~~~~w~  178 (486)
                      ++..+.+..++.|++.+.. +....++.|.+|+++|+.+.++.... ..++..++|.+.+.+.+..|++
T Consensus       330 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        330 SFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence            5555555556666666655 44557888999999999999986544 4445778999999999888864

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.27  E-value=1.4e-10  Score=112.16  Aligned_cols=130  Identities=15%  Similarity=0.178  Sum_probs=106.0

Q ss_pred             hhchhhhh-cCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcC-CCHHHHHHHHHHHH
Q 011416           47 VGPTVKSE-WNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFS-PNYITLITLRCLVG  124 (486)
Q Consensus        47 ~~~~~~~~-~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a-~~~~~l~~~r~l~G  124 (486)
                      ..+.+.++ ++ +..+.+++.+...++..++.+++++++||+|+|+++..+.++.+++.++..+. ++.+.+++..++.|
T Consensus       244 ~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  322 (437)
T TIGR00792       244 VQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAG  322 (437)
T ss_pred             hhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHH
Confidence            33444333 34 56677888888899999999999999999999999999998888887777665 46677778888899


Q ss_pred             hccCcc-hhhhhhhccccC-------CCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 011416          125 VGLGSG-HVFLSWFLEFVP-------PSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDW  177 (486)
Q Consensus       125 ~~~~~~-~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w  177 (486)
                      ++.+.. +...++++|..+       ++++|...|+.+....+|..+++.+.+.+.+..||
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~  383 (437)
T TIGR00792       323 FGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY  383 (437)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            998877 666677777754       56689999999999999999999999998877666

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00898 2A0119 cation transport protein

Probab=99.25  E-value=6.7e-11  Score=116.51  Aligned_cols=147  Identities=12%  Similarity=0.058  Sum_probs=124.9

Q ss_pred             cccCCCC---CchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhh
Q 011416          321 MFSHHPQ---DANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVM  397 (486)
Q Consensus       321 ~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (486)
                      ..+.+.+   +.+.++..+...++.+++.++.|+++||+|||+++.++.++..++.++..+.++.+.+.+..++.|++.+
T Consensus       116 ~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~  195 (505)
T TIGR00898       116 VTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIG  195 (505)
T ss_pred             EEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcc
Confidence            3556777   7888999999999999999999999999999999999999988888888888888888888899999999


Q ss_pred             hhhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhccccc
Q 011416          398 GAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFE  471 (486)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  471 (486)
                      ...+....++.|.+|+++|+.+.++......+|.+++|.+.+.+.+   |...+++.++..++..+..++ .+|
T Consensus       196 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~~~-~~e  265 (505)
T TIGR00898       196 GIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLSWF-VPE  265 (505)
T ss_pred             chHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHh-cCC
Confidence            9999999999999999999999999988888999999988765544   677777777766666555543 344

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=99.25  E-value=2.4e-11  Score=109.81  Aligned_cols=147  Identities=14%  Similarity=0.024  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhcchHHHHH-HHHH
Q 011416           25 FVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVAD----NYGRRMGFLG-EALV   99 (486)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d----r~G~r~~~~~-~~~~   99 (486)
                      +.++..+...+-..+.+..--.+.+++.+++|++....+.+--...+...+.+|+.|..+|    ||||||.++. +.++
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~  111 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLL  111 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHH
Confidence            3344444444445555555566778888999999999999988899999999999999999    6798877665 5666


Q ss_pred             HHHhhhhhhcCCCHHH-----------------HHHHHHHHHhccCcc-hhhhhhhccccCCCchhH-HHHHHHHHHHHH
Q 011416          100 TAGAGLLSSFSPNYIT-----------------LITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGM-WMVIFSSFWTIG  160 (486)
Q Consensus       100 ~~~~~~~~~~a~~~~~-----------------l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~G  160 (486)
                      .+++.++..++.++..                 ++++-.+.-++.-.. .++-+++.|...++++.+ +.+.+..+.++|
T Consensus       112 i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avG  191 (498)
T KOG0637|consen  112 IAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVG  191 (498)
T ss_pred             HHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhc
Confidence            6777778877754332                 333344444455445 677789999887776666 999999999999


Q ss_pred             HHHHHHHHHHH
Q 011416          161 SVSEAIGAWII  171 (486)
Q Consensus       161 ~~i~~~l~~~l  171 (486)
                      ..+|..++.++
T Consensus       192 nvLGY~~g~y~  202 (498)
T KOG0637|consen  192 NVLGYALGSYL  202 (498)
T ss_pred             ceeeeeccccc
Confidence            99999888743

>PTZ00207 hypothetical protein; Provisional

Probab=99.25  E-value=5.8e-10  Score=108.30  Aligned_cols=162  Identities=12%  Similarity=0.057  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHH
Q 011416          295 NSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLL  374 (486)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~  374 (486)
                      .....|....+.+.+.           +++|.+..+.+......... ....++.|++.||+|+|+++.++.++..++.+
T Consensus        39 ~~g~~y~fsv~s~~L~-----------~~lgls~~~l~~i~svg~~~-g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~l  106 (591)
T PTZ00207         39 CTSFMYAFNLISGAMQ-----------ARYNLTQRDLSTITTVGIAV-GYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTL  106 (591)
T ss_pred             HHHHHHHHHHHHHHHH-----------HHhCcCHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            3444556666666554           45678888888777653333 34566789999999999999999999999998


Q ss_pred             HHhhh------chhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 011416          375 PLVTY------QSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQM  448 (486)
Q Consensus       375 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~  448 (486)
                      +..+.      .+.+.+.+..++.|++.+...+.....+.+.+| ++||.+.|+......+|+.+.+.+...+.+ .++.
T Consensus       107 l~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~  184 (591)
T PTZ00207        107 LFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTS  184 (591)
T ss_pred             HHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHH
Confidence            88774      456667777778888887777777788888887 679999999999999999865555544443 2455


Q ss_pred             hHHHHHHHHHHHHHHHHhcccc
Q 011416          449 TAVVLLVVVIVTSILSVMLIPF  470 (486)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~~  470 (486)
                      ..+++.+++.++..++.+.+.+
T Consensus       185 ~~fl~l~vl~~vv~ll~~~~vr  206 (591)
T PTZ00207        185 AYFFFLMSFALVVGILAIVFMR  206 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHhhee
Confidence            6677777777666666555543

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.24  E-value=2.7e-10  Score=108.58  Aligned_cols=146  Identities=14%  Similarity=0.150  Sum_probs=105.0

Q ss_pred             hchhhhhcCCCcchhHHHHHHHH-HHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhh---hcC-CCHHHHHHHHHH
Q 011416           48 GPTVKSEWNLSSTEESLITTSVF-AGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLS---SFS-PNYITLITLRCL  122 (486)
Q Consensus        48 ~~~~~~~~~~s~~~~g~~~s~~~-~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~---~~a-~~~~~l~~~r~l  122 (486)
                      .+.+.+++|++..+.+++.+... .+..++.+++|++.||+|+|+.+..+..+..+..+..   ++. ++.+.+.+.-++
T Consensus       233 ~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~  312 (402)
T PRK11902        233 TTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGI  312 (402)
T ss_pred             HHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence            34567789999999999986654 5689999999999999999998887776666554333   344 466666655544


Q ss_pred             ----HHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHhHHHHHHHHHHhhc
Q 011416          123 ----VGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGF  197 (486)
Q Consensus       123 ----~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~  197 (486)
                          .|++.+.. .....++.+..|.++    .++.+...++|..+++.+++.+.+..||+..|.+.++++++.+++...
T Consensus       313 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~  388 (402)
T PRK11902        313 ENLCGGMGTAAFVALLMALCNRSFSATQ----YALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWL  388 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCcHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence                44445444 344456666666554    455566667788777778999999999999999988888776555433

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=99.24  E-value=1.3e-07  Score=88.54  Aligned_cols=368  Identities=13%  Similarity=-0.029  Sum_probs=204.4

Q ss_pred             HHHHHHHHHHHhhHhhhhchhchhhhhcCC-CcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHh---
Q 011416           28 AYAGLGWVAEAMEIMILSFVGPTVKSEWNL-SSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGA---  103 (486)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~---  103 (486)
                      ..+...+++...+.-++.+..|.+..+..- +---.+...-.-.+...+.++..|.+.||..|.++...+.+..-++   
T Consensus         5 ~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~   84 (432)
T PF06963_consen    5 WRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAA   84 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHH
Confidence            345667777777777888888877776643 3333455555566777888999999999999998877765443322   


Q ss_pred             -hhhhh--cC--C----CHHHHH---HHHHHHHhccCcchhhhhhh--cccc------CCCchhHHHHHHHHHHHHHHHH
Q 011416          104 -GLLSS--FS--P----NYITLI---TLRCLVGVGLGSGHVFLSWF--LEFV------PPSNRGMWMVIFSSFWTIGSVS  163 (486)
Q Consensus       104 -~~~~~--~a--~----~~~~l~---~~r~l~G~~~~~~~~~~~~i--~~~~------~~~~r~~~~~~~~~~~~~G~~i  163 (486)
                       +.+..  +.  +    +-+...   +.-.+.|.-.-....+....  .||.      +++.+.+..+...-.-.+..++
T Consensus        85 s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckll  164 (432)
T PF06963_consen   85 SCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLL  164 (432)
T ss_pred             HHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHH
Confidence             22211  11  1    112222   22222222222222222211  2453      4556677778888888889999


Q ss_pred             HHHHHHHHhcCCCcHHHHHHhHHHHHHHHHH-hhcc----CCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhcc
Q 011416          164 EAIGAWIIMPRLDWRWLLGLSSIPSFILLAF-LGFQ----PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARR  238 (486)
Q Consensus       164 ~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~-~~~~----~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (486)
                      +|++.|.+.+..+.+....+.++..++.+++ ++++    ...|. +..+++.++.+...                    
T Consensus       165 aPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~-L~~~~~~~~~~~~~--------------------  223 (432)
T PF06963_consen  165 APLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPA-LAVKKRSSESESSS--------------------  223 (432)
T ss_pred             HHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-hcCCCCCccccccc--------------------
Confidence            9999999999889888877777776665433 2222    12221 11111111000000                    


Q ss_pred             ccCCCCCCCCccchhhcccCCCCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCC
Q 011416          239 STLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRS  318 (486)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (486)
                      +.+  +.+.+.+.....+    .....-......|+..++.+....-+...++++........+..|             
T Consensus       224 ~~~--~~~~~~~~~~~~~----~~~~~~~~~~~~w~~Y~~q~vflas~alalLY~TVLsf~~lmt~y-------------  284 (432)
T PF06963_consen  224 DEE--SSSESSSDPSILK----RLWNPLRTIIRGWRTYFRQPVFLASFALALLYFTVLSFGGLMTAY-------------  284 (432)
T ss_pred             ccc--ccccccchhhHHH----HHHHHHHHHhccHHHHHhCHHHHHHHHHHHHHHHHhcCcHHHHHH-------------
Confidence            000  0000000000000    000000111224555666555555444444444311111111111             


Q ss_pred             CccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHh----hhchh------HHHHHH
Q 011416          319 PLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLV----TYQSN------ILTTGL  388 (486)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~----~~~~~------~~~~~~  388 (486)
                        ....|+++...+..-....+.++.+.++..++.+|+|..+.-.++......++.+..    ...++      ..+...
T Consensus       285 --l~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~g  362 (432)
T PF06963_consen  285 --LKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGG  362 (432)
T ss_pred             --HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHH
Confidence              123489999999999999999999999999999999988777666665443333222    22211      122222


Q ss_pred             HHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHH
Q 011416          389 LFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLV  437 (486)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i  437 (486)
                      ..+.-++.-+.=-...-+..|..|+++||+..|+-+..+++...+.-.+
T Consensus       363 i~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~  411 (432)
T PF06963_consen  363 IALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVL  411 (432)
T ss_pred             HHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            2333333344445677788999999999999999999998877665544

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>TIGR01272 gluP glucose/galactose transporter

Probab=99.23  E-value=3.7e-10  Score=102.80  Aligned_cols=158  Identities=12%  Similarity=0.055  Sum_probs=118.1

Q ss_pred             HHHHHHHHHHHHHhhHhhhhchhchhhh---hcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHH
Q 011416           26 VLAYAGLGWVAEAMEIMILSFVGPTVKS---EWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAG  102 (486)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~  102 (486)
                      .+.+..+..++............+.+.+   .+|++..+.+...+.+..+..++.+..+++.||+|+|+.+.++..+..+
T Consensus       141 ~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~  220 (310)
T TIGR01272       141 HLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVL  220 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence            3334445555544344444444455443   3699999999999999999999999999999999999999888888888


Q ss_pred             hhhhhhcCCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Q 011416          103 AGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLL  181 (486)
Q Consensus       103 ~~~~~~~a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~f  181 (486)
                      +.++....++...+ ..-++.|++.+.. |...+...+..++ +.+.+.++. ....+|.++.|++.|.+.+..|.+..|
T Consensus       221 ~~~l~~~~~~~~~~-~~~~l~g~~~s~i~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~  297 (310)
T TIGR01272       221 LSIGAALTHGYVAM-WFVLALGLFNSIMFPTIFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAF  297 (310)
T ss_pred             HHHHHHHcCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHH
Confidence            77666665554433 3555788988888 7777777777764 456667775 566789999999999999999999988


Q ss_pred             HHhHH
Q 011416          182 GLSSI  186 (486)
Q Consensus       182 ~~~~~  186 (486)
                      ++..+
T Consensus       298 ~v~~~  302 (310)
T TIGR01272       298 ALPVP  302 (310)
T ss_pred             HHHHH
Confidence            75433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.22  E-value=1.3e-09  Score=101.17  Aligned_cols=146  Identities=10%  Similarity=0.024  Sum_probs=125.0

Q ss_pred             ccCCCCCch-hHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhh
Q 011416          322 FSHHPQDAN-LYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAF  400 (486)
Q Consensus       322 ~~~~~~~~~-~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (486)
                      +++|++..+ .+.....+..+..+..+.+|+++||+|.|+++.++.+...+..++..+.++...+.+.-++.|++.+...
T Consensus        54 ~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~  133 (511)
T TIGR00806        54 TVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARI  133 (511)
T ss_pred             HHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456899999 9999999999999999999999999999999999999999999999988888889999999999999999


Q ss_pred             hhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhccchHH---HHHHHHHHHHHHHHhccc
Q 011416          401 TVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAV---VLLVVVIVTSILSVMLIP  469 (486)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~---~~~~~~~~~~~~~~~~~~  469 (486)
                       ....++.+.+|+++|+++.|+.+....+|.++++.+.++ ....||....   .+..+...++.++.+++.
T Consensus       134 -A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP  203 (511)
T TIGR00806       134 -AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFMTFSVFLALFLK  203 (511)
T ss_pred             -HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHHHHHHHhCC
Confidence             999999999999999999999999999999999999999 5556765433   233344444455555544

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.22  E-value=2.4e-10  Score=105.17  Aligned_cols=165  Identities=7%  Similarity=-0.050  Sum_probs=132.5

Q ss_pred             HHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcCCCHHH
Q 011416           36 AEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYIT  115 (486)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a~~~~~  115 (486)
                      -..+|.. .+.....+-++-+.+....|.+.+...+.-++...+..++.+|+|.|+.++++..++++=.+++++++|.+.
T Consensus       236 Y~vfdqq-f~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~  314 (412)
T PF01306_consen  236 YDVFDQQ-FPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWV  314 (412)
T ss_dssp             HHHHHHH-HHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHH
T ss_pred             HHHHHHH-HHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHH
Confidence            3444444 333333343444445667899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHhHHHHHHHHH
Q 011416          116 LITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIF-SSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLA  193 (486)
Q Consensus       116 l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~G~~i~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~  193 (486)
                      +.+.+.+.|+-.+.. .....|+++.+|+|..++...+. +.+.++|..+.+.++|.+.|+.|.+..|++.+.+.++..+
T Consensus       315 i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~l  394 (412)
T PF01306_consen  315 ISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTL  394 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHH
Confidence            999999999999988 77779999999998888888774 7888999999999999999999999999999888777655


Q ss_pred             H-hhccCCC
Q 011416          194 F-LGFQPES  201 (486)
Q Consensus       194 ~-~~~~~e~  201 (486)
                      + .+.++++
T Consensus       395 i~~f~l~~~  403 (412)
T PF01306_consen  395 ISAFTLKKD  403 (412)
T ss_dssp             HHHHHS--S
T ss_pred             HheeeecCC
Confidence            4 4445544

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.21  E-value=1.8e-10  Score=114.87  Aligned_cols=150  Identities=9%  Similarity=0.017  Sum_probs=123.9

Q ss_pred             ccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhc-------------------
Q 011416          320 LMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQ-------------------  380 (486)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-------------------  380 (486)
                      +.++++.+..+.+++.+...++..++.++.+++.||.+||+++.++.++.+++.++..+.+                   
T Consensus        59 iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~  138 (633)
T TIGR00805        59 IERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLS  138 (633)
T ss_pred             hhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccccccc
Confidence            3466789999999999999999999999999999999999999999999999888776531                   


Q ss_pred             --------------------------------hhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHHHH
Q 011416          381 --------------------------------SNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGR  428 (486)
Q Consensus       381 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  428 (486)
                                                      ....+++.-++.|++.+..++...+++.|.+|+++|+.+.|+.+....
T Consensus       139 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~  218 (633)
T TIGR00805       139 SANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAV  218 (633)
T ss_pred             ccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHH
Confidence                                            123445677888899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhh----------------------ccchHHHHHHHHHHHHHHHHhccc
Q 011416          429 IGGMVCPLVAVALVANC----------------------HQMTAVVLLVVVIVTSILSVMLIP  469 (486)
Q Consensus       429 ~g~~~~~~i~g~l~~~~----------------------g~~~~~~~~~~~~~~~~~~~~~~~  469 (486)
                      +|..+++.+.+.+.+..                      .|+..|++.+++.++.++..+.+.
T Consensus       219 iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p  281 (633)
T TIGR00805       219 FGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFP  281 (633)
T ss_pred             hhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            99999999999888643                      145567777766666655554443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.21  E-value=7.6e-11  Score=113.35  Aligned_cols=174  Identities=17%  Similarity=0.186  Sum_probs=155.0

Q ss_pred             HHHHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhc--chHHHHHHHHHHHHh
Q 011416           26 VLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYG--RRMGFLGEALVTAGA  103 (486)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G--~r~~~~~~~~~~~~~  103 (486)
                      .+....+...+..+...+....+|.+.++.+.+..+.+.+.++..+...++.+..|+++|+..  ++.+..++++..+++
T Consensus       299 ~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~  378 (509)
T KOG2504|consen  299 KFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLA  378 (509)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHH
Confidence            556666777777888888888999999999999999999999999999999999999999988  566777888888999


Q ss_pred             hhhhhcCCCHHHHHHHHHHHHhccCcchhhh-hhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-cHHHH
Q 011416          104 GLLSSFSPNYITLITLRCLVGVGLGSGHVFL-SWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLD-WRWLL  181 (486)
Q Consensus       104 ~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~-~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~-w~~~f  181 (486)
                      .+.+.++++++.+.....+.|++.|...... ..+.|..+.++-..+.|+.....+++.++||++++.+.+..+ |...|
T Consensus       379 ~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f  458 (509)
T KOG2504|consen  379 RLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAF  458 (509)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeeh
Confidence            9999999999999999999999999885554 577799999999999999999999999999999999888777 99999


Q ss_pred             HHhHHHHHHHHHHhhccC
Q 011416          182 GLSSIPSFILLAFLGFQP  199 (486)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~  199 (486)
                      +..++..++..+.++..+
T Consensus       459 ~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  459 YFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             hhcChHHHHHHHHHHHhH
Confidence            999998888777666665

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.20  E-value=9.2e-10  Score=92.28  Aligned_cols=352  Identities=14%  Similarity=0.026  Sum_probs=196.0

Q ss_pred             HhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcCCCHHHHHHHH
Q 011416           41 IMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLR  120 (486)
Q Consensus        41 ~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r  120 (486)
                      .-.-+|.+-.+-+.++....++|.+.-+.+-..++...+.|.++||-|||+.-+.-++...+++ +.-.+++|-.++++|
T Consensus        53 DWLQgPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkVLmVGR  131 (454)
T KOG4332|consen   53 DWLQGPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKVLMVGR  131 (454)
T ss_pred             hhhcCceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEEEeehh
Confidence            3345677777888899999999999888888889999999999999999996544444444433 345678899999999


Q ss_pred             HHHHhccCcc-hhhhh-hhccccCCCc-----hhHHHHHH-HHHHHHHHHHHHHHHHHHhcCC--CcHHHHHHhHHHHHH
Q 011416          121 CLVGVGLGSG-HVFLS-WFLEFVPPSN-----RGMWMVIF-SSFWTIGSVSEAIGAWIIMPRL--DWRWLLGLSSIPSFI  190 (486)
Q Consensus       121 ~l~G~~~~~~-~~~~~-~i~~~~~~~~-----r~~~~~~~-~~~~~~G~~i~~~l~~~l~~~~--~w~~~f~~~~~~~~~  190 (486)
                      .+-|+..+.. ..--+ ++.|..+++.     ....++-. ..+.++=.+++.+.+-.+.+.+  |--.+|-..+.+..+
T Consensus       132 ~LGGiaTsLLFSaFEsWliaEHnekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLai  211 (454)
T KOG4332|consen  132 VLGGIATSLLFSAFESWLIAEHNEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAI  211 (454)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhhhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHH
Confidence            9999999887 55545 4557653321     11111111 1233344455555565666544  444555444433333


Q ss_pred             H-HHHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCCCCcccCCCc
Q 011416          191 L-LAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSG  269 (486)
Q Consensus       191 ~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (486)
                      . .+..-      .|...-+++.+.++...+.+.                                              
T Consensus       212 gmAvil~------~W~ENygdps~~kdlltqf~g----------------------------------------------  239 (454)
T KOG4332|consen  212 GMAVILS------SWSENYGDPSENKDLLTQFKG----------------------------------------------  239 (454)
T ss_pred             HHHHHHh------hhhhccCChhhhHHHHHHhhH----------------------------------------------
Confidence            2 22221      133333444444444433322                                              


Q ss_pred             hhhhHhhhchhhHHHHHHHHHH-HHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHH
Q 011416          270 LSLFLMLFSSKLARTTILLWLL-LFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLL  348 (486)
Q Consensus       270 ~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  348 (486)
                        ..+.+.+++   ++.++... ...-...+..+..|.|.+..          ++   ...--|..+..+.+..++|+-+
T Consensus       240 --aa~aiaSD~---ki~LLG~iqsLFE~smytFVFLWTPaLsp----------n~---e~iPhGfiFatFMlASmLGSSl  301 (454)
T KOG4332|consen  240 --AARAIASDE---KIALLGAIQSLFEGSMYTFVFLWTPALSP----------ND---EEIPHGFIFATFMLASMLGSSL  301 (454)
T ss_pred             --hHHHHhcch---HHHHHHHHHHHHhhhhheeeeeecccCCC----------Cc---ccCCchhHHHHHHHHHHHhhHH
Confidence              111122221   12222222 22223333333345553320          11   1122356666777777888777


Q ss_pred             HHHHHHHhch--hHHHHHHHHHHHHHHHHHhh-------hchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhH
Q 011416          349 AAILVDTAGR--KLSITIMFTLSCLFLLPLVT-------YQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTG  419 (486)
Q Consensus       349 ~g~l~dr~g~--~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (486)
                      ..++..|-..  ...+.+.+.+..+.+.+...       ..++....+..+++-.+.+..+|..+-+-.+..|++.|++.
T Consensus       302 a~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEearsti  381 (454)
T KOG4332|consen  302 ASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEARSTI  381 (454)
T ss_pred             HHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHHHhhh
Confidence            7777665433  23445555555444433322       11233445666667788899999999999999999999887


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHh--hccchHHHHHHHHHHHHHHHH
Q 011416          420 AGAANAMGRIGGMVCPLVAVALVAN--CHQMTAVVLLVVVIVTSILSV  465 (486)
Q Consensus       420 ~g~~~~~~~~g~~~~~~i~g~l~~~--~g~~~~~~~~~~~~~~~~~~~  465 (486)
                      +-....--++-..++-..  .=.+.  .+....|-++.+...++.+..
T Consensus       382 mNfFRvPLnifvClvLyn--lh~~~~p~~tr~mf~icS~~~~~a~i~~  427 (454)
T KOG4332|consen  382 MNFFRVPLNIFVCLVLYN--LHVDAFPTTTRNMFGICSAFLFVASILQ  427 (454)
T ss_pred             hhheechhhHhhhhhhee--cccccCccccchhhhhhHHHHHHHHHHH
Confidence            665544333322222111  00111  233456666666666654443

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.20  E-value=2.7e-10  Score=104.95  Aligned_cols=186  Identities=15%  Similarity=0.042  Sum_probs=149.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHH-hchhHH
Q 011416          283 RTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDT-AGRKLS  361 (486)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr-~g~~~~  361 (486)
                      |.++.++..-+.--++||++-..+..+.....      .+..|+++.++.-....+....-+..+++|+++|| +|+|+.
T Consensus        21 r~l~~if~vE~WERFsyYGmraiL~~Yl~~~~------~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~t   94 (498)
T COG3104          21 RGLYLIFFVELWERFSYYGMRAILILYLYYQL------GDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRT   94 (498)
T ss_pred             chHHHHHHHHHHHHHhhhhhHHHHHHHHHHhc------cccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Confidence            34555666666777888887766655542211      12245888888888888777777888999999999 599999


Q ss_pred             HHHHHHHHHHHHHHHhhh--chhHHHHHHHHHHHHhhhhhhhhHhhhccccccccc--hhhHhHHHHHHHHHHHHHHHHH
Q 011416          362 ITIMFTLSCLFLLPLVTY--QSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV--RSTGAGAANAMGRIGGMVCPLV  437 (486)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~g~~~~~~i  437 (486)
                      +..+.+++.++.+++...  .....+.+.+.+..++.+..=+...++..|.+|+++  |..++++..+..++|+.++|.+
T Consensus        95 I~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i  174 (498)
T COG3104          95 IVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPII  174 (498)
T ss_pred             HHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHH
Confidence            999999999999999886  366777888888889999999999999999987643  6778888889999999999999


Q ss_pred             HHHHHHhhccchHHHHHHHHHHHHHHHHhcccccccC
Q 011416          438 AVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKG  474 (486)
Q Consensus       438 ~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (486)
                      .+++.++.||...|...++-+.++.+..++..+..+.
T Consensus       175 ~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~  211 (498)
T COG3104         175 TGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKG  211 (498)
T ss_pred             HHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcC
Confidence            9999999999999999999888888888777654443

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.19  E-value=1.6e-09  Score=101.80  Aligned_cols=180  Identities=16%  Similarity=0.117  Sum_probs=133.9

Q ss_pred             hHHHHHHHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHH
Q 011416           22 YQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTA  101 (486)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~  101 (486)
                      .|+.....+.+...-..-+...+......+-++-|++..+.-+..........+..+++..+.||+|||+.++.+..+..
T Consensus       267 lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~  346 (485)
T KOG0569|consen  267 LRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMA  346 (485)
T ss_pred             hhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence            33433333333333333444555566677888899999999999999999999999999999999999999999999998


Q ss_pred             HhhhhhhcCC---CHH------HHHHHHHHH--HhccCcchhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011416          102 GAGLLSSFSP---NYI------TLITLRCLV--GVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWI  170 (486)
Q Consensus       102 ~~~~~~~~a~---~~~------~l~~~r~l~--G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~  170 (486)
                      +..+++..+.   +..      ..+++.++.  .++.|..|...-+.+|.+|++.|+.++++.....-+...+-...-..
T Consensus       347 ~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~  426 (485)
T KOG0569|consen  347 VALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPP  426 (485)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8887776542   111      123344443  34445556666788899999999999999999988888887777777


Q ss_pred             HhcCCCcHHHHHHhHHHHHHH-HHHhhccCCCc
Q 011416          171 IMPRLDWRWLLGLSSIPSFIL-LAFLGFQPESP  202 (486)
Q Consensus       171 l~~~~~w~~~f~~~~~~~~~~-~~~~~~~~e~~  202 (486)
                      +.+..|- +.|++..+++++. +..++.+||+.
T Consensus       427 l~~~~g~-~~filF~i~~~~~~i~~~~~lPETk  458 (485)
T KOG0569|consen  427 LQNVIGP-YVFILFVIPLAIFLIYLYRYLPETK  458 (485)
T ss_pred             HHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccC
Confidence            7777776 6777777777665 56688899985

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.18  E-value=5.3e-10  Score=104.84  Aligned_cols=167  Identities=11%  Similarity=0.112  Sum_probs=129.6

Q ss_pred             HHHHHhhHhhhhchhchhhhhcC-CCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcC-C
Q 011416           34 WVAEAMEIMILSFVGPTVKSEWN-LSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFS-P  111 (486)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a-~  111 (486)
                      .++.......+....+.+.++.| .+....|.+.++..++-.+.-...+++..|+|.|+++.++.+..++=..+++.. +
T Consensus       216 ~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~  295 (400)
T PF03825_consen  216 AFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSD  295 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            34445555555555666777777 777888888888889999999999999999999999999999999988888887 5


Q ss_pred             CHHHHHH----HHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHH-HHHHHHHHHHHHHHHhcCCC------cHH
Q 011416          112 NYITLIT----LRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSF-WTIGSVSEAIGAWIIMPRLD------WRW  179 (486)
Q Consensus       112 ~~~~l~~----~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~G~~i~~~l~~~l~~~~~------w~~  179 (486)
                      +.+...+    ...++|+..+.. .....++.+..|++.|+++.+++.+. .++|..+|..++|.+.+++|      |..
T Consensus       296 ~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~  375 (400)
T PF03825_consen  296 PWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSA  375 (400)
T ss_pred             CcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHH
Confidence            5554333    345699999988 77788999999999999999998764 68999999999999998776      444


Q ss_pred             HHHHhHHHHHHHHH-HhhccCC
Q 011416          180 LLGLSSIPSFILLA-FLGFQPE  200 (486)
Q Consensus       180 ~f~~~~~~~~~~~~-~~~~~~e  200 (486)
                      .+.+.+++.++..+ .+++++|
T Consensus       376 ~~~v~a~~~~~~~~~f~~~fk~  397 (400)
T PF03825_consen  376 VFLVFAVMALVILVLFVILFKP  397 (400)
T ss_pred             HHHHHHHHHHHHHHHHHhhccC
Confidence            55555555555433 3444444

>TIGR00896 CynX cyanate transporter

Probab=99.17  E-value=6.5e-10  Score=104.17  Aligned_cols=137  Identities=11%  Similarity=-0.080  Sum_probs=110.3

Q ss_pred             ccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhh
Q 011416          322 FSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFT  401 (486)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (486)
                      +++|.+..+.++..+...++..++.++.|++.||+|||+.+.++.++.+++.+.. ..++.+...+..++.+++.+...+
T Consensus        28 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g~~~~~~  106 (355)
T TIGR00896        28 SALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVGIAIINV  106 (355)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHhc
Confidence            4568999999999999999999999999999999999999998887777766655 455566666666777777777677


Q ss_pred             hHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhc--cchHHHHHHHHHHH
Q 011416          402 VSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH--QMTAVVLLVVVIVT  460 (486)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g--~~~~~~~~~~~~~~  460 (486)
                      .......|.+| ++|+++.++.+....+|..+++.+.+.+.+..+  |...+...++..++
T Consensus       107 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~  166 (355)
T TIGR00896       107 LLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALL  166 (355)
T ss_pred             cchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence            77777788876 579999999999999999999999998887653  55566555544433

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.17  E-value=8e-10  Score=106.65  Aligned_cols=142  Identities=15%  Similarity=0.056  Sum_probs=114.1

Q ss_pred             CCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHh
Q 011416          325 HPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSL  404 (486)
Q Consensus       325 ~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (486)
                      |.+ .+..+......+...++.++.|+++|.+|||..++.+.++..++.++....++....+....+.|++.+.. ....
T Consensus        75 G~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~-~~~~  152 (599)
T PF06609_consen   75 GGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQ-ELAA  152 (599)
T ss_pred             CCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHH-HHHH
Confidence            344 45567777888999999999999999999999999999999999999999888888888888888885544 4556


Q ss_pred             hhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhcc
Q 011416          405 IYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLI  468 (486)
Q Consensus       405 ~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  468 (486)
                      ..++|..|.+.|..+.++.....-....++|.+...+..+.+|++.+++...+..++++..+++
T Consensus       153 ~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~f  216 (599)
T PF06609_consen  153 LAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFF  216 (599)
T ss_pred             HHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHH
Confidence            6689999999998888777665555555777777766667789999998888777766554444

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.16  E-value=3e-09  Score=101.14  Aligned_cols=152  Identities=10%  Similarity=-0.027  Sum_probs=113.4

Q ss_pred             ccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHH----HhchhHHHHHH-HHHHHHHHHHHhhhchh--------------
Q 011416          322 FSHHPQDANLYIDEFITSLAEIPGLLLAAILVD----TAGRKLSITIM-FTLSCLFLLPLVTYQSN--------------  382 (486)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~d----r~g~~~~~~~~-~~~~~~~~~~~~~~~~~--------------  382 (486)
                      +..|.+....+.......+.+++..++.|+++|    |+|||+..+.. .....+++.++.+..+.              
T Consensus        32 ~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~  111 (477)
T TIGR01301        32 QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKP  111 (477)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchh
Confidence            456789999999999999999999999999999    59999988764 55555565665553321              


Q ss_pred             ---HHHHHHHHHHHHhhhhhhhhHhhhccccccccch--hhHhHHHHHHHHHHHHHHHHHHHHH--HHhh----------
Q 011416          383 ---ILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVR--STGAGAANAMGRIGGMVCPLVAVAL--VANC----------  445 (486)
Q Consensus       383 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~g~~~~~~i~g~l--~~~~----------  445 (486)
                         +...+...+..++.....+...+++.|..|+++|  +.++++.+...++|+.+++.+.+..  .+..          
T Consensus       112 ~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~  191 (477)
T TIGR01301       112 RAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGV  191 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccccccccc
Confidence               1223333344556677778889999999998865  6799999999999999999998864  2222          


Q ss_pred             ---ccchHHHHHHHHHHHHHHHHhccccccc
Q 011416          446 ---HQMTAVVLLVVVIVTSILSVMLIPFETK  473 (486)
Q Consensus       446 ---g~~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (486)
                         +....|.+.+++.+++..+..+..+|..
T Consensus       192 ~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~  222 (477)
T TIGR01301       192 SCANLKSCFLIDIILLAILTYIALSAVKENP  222 (477)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence               3455677777777777777777776654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.15  E-value=3e-10  Score=96.03  Aligned_cols=171  Identities=16%  Similarity=0.137  Sum_probs=123.6

Q ss_pred             HHHHHHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHH-HHHHH
Q 011416           24 CFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEA-LVTAG  102 (486)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~-~~~~~  102 (486)
                      .+++.+++..+....+....+++  ...++++|+|+.+.+.+.+....-.++.+++.|.++||+|++.+.+.+. +...+
T Consensus       266 fw~~~iicv~yyva~fPFi~lg~--~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~  343 (459)
T KOG4686|consen  266 FWVLVIICVLYYVAWFPFITLGP--MFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLL  343 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhH--HHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHH
Confidence            34555556655555554444443  3478999999999999999999999999999999999999997766654 44444


Q ss_pred             hhhhhhcCCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---cH
Q 011416          103 AGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLD---WR  178 (486)
Q Consensus       103 ~~~~~~~a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~---w~  178 (486)
                      +-....+  +++.=.++..+.|++.... ...-+.++...|+++.|++.|..++..++|..+.|++++.+.++-|   |-
T Consensus       344 ~H~~l~F--t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~l  421 (459)
T KOG4686|consen  344 GHSGLFF--TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNL  421 (459)
T ss_pred             HhhhHHh--hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhH
Confidence            4444444  3344456777888887766 3455788889999999999999999999999999999999987654   55


Q ss_pred             HHHHHh-HHHHHHHHHHhhcc
Q 011416          179 WLLGLS-SIPSFILLAFLGFQ  198 (486)
Q Consensus       179 ~~f~~~-~~~~~~~~~~~~~~  198 (486)
                      -+|.+. +.+++....+.+.+
T Consensus       422 e~ffl~~~~~aL~svgil~~~  442 (459)
T KOG4686|consen  422 EAFFLIIGLMALTSVGILFYL  442 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHhhe
Confidence            455443 33444433333333

>TIGR00901 2A0125 AmpG-related permease

Probab=99.15  E-value=5.7e-10  Score=104.62  Aligned_cols=149  Identities=19%  Similarity=0.118  Sum_probs=111.2

Q ss_pred             ccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHh-----chhHH-HHHHHHHHHHHHHHHhhh---chhHHHHHHHHHH
Q 011416          322 FSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTA-----GRKLS-ITIMFTLSCLFLLPLVTY---QSNILTTGLLFGA  392 (486)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~-----g~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  392 (486)
                      ++.|.+..+.+..... .+...+ .++.|+++||+     |||+. +..+.++.++....+.+.   .+.+......++.
T Consensus        16 ~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~   93 (356)
T TIGR00901        16 RSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLI   93 (356)
T ss_pred             HHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHH
Confidence            3457888888888644 444444 88999999998     78886 456666666665555543   2333444444556


Q ss_pred             HHhhhhhhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhc--------cchHHHHHHHHHHHHHHH
Q 011416          393 RMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH--------QMTAVVLLVVVIVTSILS  464 (486)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g--------~~~~~~~~~~~~~~~~~~  464 (486)
                      +.+.....+...+++.|.+|+++|+.+.|+......+|..+++.+.+.+.+..+        |...|++.+++.++..+.
T Consensus        94 ~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~  173 (356)
T TIGR00901        94 AFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLV  173 (356)
T ss_pred             HHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHH
Confidence            666666778889999999999999999999999999999999999999998888        888888888777766655


Q ss_pred             Hhcccccc
Q 011416          465 VMLIPFET  472 (486)
Q Consensus       465 ~~~~~~~~  472 (486)
                      .++..+|+
T Consensus       174 ~~~~~~e~  181 (356)
T TIGR00901       174 TLFLAKEP  181 (356)
T ss_pred             HHHhccCC
Confidence            55444554

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.14  E-value=9.4e-10  Score=99.18  Aligned_cols=160  Identities=21%  Similarity=0.173  Sum_probs=135.1

Q ss_pred             hhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcCCCHHHHHHHHH
Q 011416           42 MILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRC  121 (486)
Q Consensus        42 ~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r~  121 (486)
                      ..+......-..++|++..+...+.-...+..+++++++|+|.||+|.|+++..+.++..+.++...+...-..+.+.-.
T Consensus       270 til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gl  349 (438)
T COG2270         270 TILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGL  349 (438)
T ss_pred             HHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHH
Confidence            33333334445599999999999999999999999999999999999999999999999998888877777777778889


Q ss_pred             HHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CcHHHHHHhHHHHHHHHHHhhccC
Q 011416          122 LVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRL-DWRWLLGLSSIPSFILLAFLGFQP  199 (486)
Q Consensus       122 l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~-~w~~~f~~~~~~~~~~~~~~~~~~  199 (486)
                      +.|...|.. ..+.++..+..|+++-++.+|++......++.+||.+-+.+.+.. +-|..+....++..+.++....+|
T Consensus       350 l~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~  429 (438)
T COG2270         350 LVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVK  429 (438)
T ss_pred             HHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeec
Confidence            999999998 777899999999999999999999999999999999998887644 467777666666666666666666


Q ss_pred             CC
Q 011416          200 ES  201 (486)
Q Consensus       200 e~  201 (486)
                      ++
T Consensus       430 ~~  431 (438)
T COG2270         430 VP  431 (438)
T ss_pred             CC
Confidence            54

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.13  E-value=4e-09  Score=114.29  Aligned_cols=137  Identities=14%  Similarity=-0.026  Sum_probs=105.8

Q ss_pred             chhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHH--HHHHHHHH-hhhchhHHHHHHHHHHHHhhhhhhhhHhh
Q 011416          329 ANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTL--SCLFLLPL-VTYQSNILTTGLLFGARMCVMGAFTVSLI  405 (486)
Q Consensus       329 ~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (486)
                      ...++......+..++.++++|+++||++||+++......  .......+ ....+.+.+++..++.|++.+...|...+
T Consensus        52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a  131 (1140)
T PRK06814         52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS  131 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH
Confidence            3466777788888899999999999999999975332222  11111122 22467788888889999999999999999


Q ss_pred             hccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Q 011416          406 YAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSV  465 (486)
Q Consensus       406 ~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~  465 (486)
                      ++.+.+|+++++.++|+.++..++|..+||.+.|++.+..++...++..+.+.+++.++.
T Consensus       132 ~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~  191 (1140)
T PRK06814        132 ILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLAS  191 (1140)
T ss_pred             hhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998888777744334344433333

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=99.13  E-value=1.1e-09  Score=95.23  Aligned_cols=376  Identities=15%  Similarity=0.104  Sum_probs=227.1

Q ss_pred             hhchhh-hhcCCCcchh-HHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHH
Q 011416           47 VGPTVK-SEWNLSSTEE-SLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVG  124 (486)
Q Consensus        47 ~~~~~~-~~~~~s~~~~-g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G  124 (486)
                      +.|.+. .+.|++..|+ .-+.-...-.+.+.-.|.=.+.|-.-.|++++.-.+.......+.-+.++.+.+-+.-+..|
T Consensus        27 ~tpyl~gp~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG  106 (433)
T KOG3810|consen   27 LTPYLLGPDKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYG  106 (433)
T ss_pred             cchhccCCCCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcC
Confidence            334433 4456666554 23344455667777788888999999999999888888888888889999999999999999


Q ss_pred             hccCcchhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCcHHHHHHhHHHHHHHHHHhhccCCCc
Q 011416          125 VGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPR--LDWRWLLGLSSIPSFILLAFLGFQPESP  202 (486)
Q Consensus       125 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~--~~w~~~f~~~~~~~~~~~~~~~~~~e~~  202 (486)
                      ...+.-.+-++++-+..+|+++.++.|...++.-.|-..|..++..+...  .++...-.+.-....+..++..++|..+
T Consensus       107 ~~tAaEIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~  186 (433)
T KOG3810|consen  107 PATAAEIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVK  186 (433)
T ss_pred             hHHHHHHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCc
Confidence            98877777889999999999999999999999999999999999888753  3444444555444455566677777665


Q ss_pred             hhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCCCCcccCCCchhhhHhhhchhhH
Q 011416          203 RYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLA  282 (486)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  282 (486)
                      +....+.++++.  ...+..+.+                     .+.+......       .--..-...+.+..+++. 
T Consensus       187 rSl~f~~~~~~~--~v~~~e~~~---------------------~~~~~~~~l~-------~~~~~l~~~l~~~y~np~-  235 (433)
T KOG3810|consen  187 RSLYFHRLEDKI--SVGDLEEMN---------------------PQASYMSYLR-------GAFVLLWRDLQECYSNPR-  235 (433)
T ss_pred             hhhhhhcccccc--eeccchhcC---------------------ccchhhHHHH-------HHHHHHHHHHHHHhcCch-
Confidence            433222221110  000000000                     0000000000       000000001112222222 


Q ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchh--
Q 011416          283 RTTILLWLL-LFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRK--  359 (486)
Q Consensus       283 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~--  359 (486)
                         ++-|-. +......+|.+..+.+.+-+....         ......-|..=.+..+.++++.+..|.+--++.|.  
T Consensus       236 ---ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~~---------~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~  303 (433)
T KOG3810|consen  236 ---LLKWSLWWALASCGYYQVTNYTQILWKEVAP---------NPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGD  303 (433)
T ss_pred             ---hhhhHHHHHHhhchhHHHHHHHHHHHHhhCC---------CchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhH
Confidence               122222 233445556666666554422110         01111122333444556667777778776555554  


Q ss_pred             HHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHH
Q 011416          360 LSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAV  439 (486)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g  439 (486)
                      ..+.++....+-..+.+....+.|...+...+.........++....+++....+..|..+|+...+.-+-..+-..+  
T Consensus       304 ~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT~i--  381 (433)
T KOG3810|consen  304 LLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFGINTFVALILQSILTLI--  381 (433)
T ss_pred             HHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehHHHHHHHHHHhheEE--
Confidence            344555555555666666678888888888888877777778777777777778888999998877665555444443  


Q ss_pred             HHHHhhc-----------cchHHHHHHHHHHHHHHHHhcc
Q 011416          440 ALVANCH-----------QMTAVVLLVVVIVTSILSVMLI  468 (486)
Q Consensus       440 ~l~~~~g-----------~~~~~~~~~~~~~~~~~~~~~~  468 (486)
                       +.|..|           +..-|.+.+++.++.....+..
T Consensus       382 -Vvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~~~~  420 (433)
T KOG3810|consen  382 -VVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIEYLM  420 (433)
T ss_pred             -EEcccccCCCcceeEEEEeehHHHHHHHHHHHHHHHHHH
Confidence             244322           3456777888887776665444

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.13  E-value=1.2e-09  Score=118.63  Aligned_cols=141  Identities=15%  Similarity=0.045  Sum_probs=120.4

Q ss_pred             chhhhhcCCCcc-hhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHhcc
Q 011416           49 PTVKSEWNLSST-EESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGL  127 (486)
Q Consensus        49 ~~~~~~~~~s~~-~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~  127 (486)
                      +.+.+++|.+.. +.|++.+...++..++++++|++.||+++|+++.++.++.+++.++..+..+.+.+++..++.|++.
T Consensus       257 ~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  336 (1146)
T PRK08633        257 AYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSA  336 (1146)
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            345677899999 9999999999999999999999999999999999999988888888888889999989999999999


Q ss_pred             Ccc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcHHHHHHhHHHHH
Q 011416          128 GSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMP-RLDWRWLLGLSSIPSF  189 (486)
Q Consensus       128 ~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~-~~~w~~~f~~~~~~~~  189 (486)
                      +.. +...+++.+..|+++||+++|+.+....+|.++++.+++.+.. .+++...|++.+.+.+
T Consensus       337 ~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  400 (1146)
T PRK08633        337 GLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTL  400 (1146)
T ss_pred             HHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            887 6677888999999999999999999999999888888777643 2456666665554443

>PRK09848 glucuronide transporter; Provisional

Probab=99.12  E-value=1.1e-09  Score=105.96  Aligned_cols=134  Identities=16%  Similarity=0.096  Sum_probs=103.4

Q ss_pred             hhchhchh-hhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcCC--CHHHHHHHH
Q 011416           44 LSFVGPTV-KSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSP--NYITLITLR  120 (486)
Q Consensus        44 ~~~~~~~~-~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a~--~~~~l~~~r  120 (486)
                      .....|.+ ++.+|.+....++......++..++.++++++.||+|+|+++.++..+.+++.++..+.+  +++.+++..
T Consensus       247 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~  326 (448)
T PRK09848        247 VSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVAL  326 (448)
T ss_pred             HhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHH
Confidence            33344544 445676665555555555677888999999999999999999999998888887776654  677777788


Q ss_pred             HHHHhccCcc-hhhhhhhccccCCC-------chhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 011416          121 CLVGVGLGSG-HVFLSWFLEFVPPS-------NRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDW  177 (486)
Q Consensus       121 ~l~G~~~~~~-~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w  177 (486)
                      ++.|+|.+.. +...++..|..|.+       ++|...|+.+....+|..+++.+.+.+.+..|+
T Consensus       327 ~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        327 AIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            8899998887 66667777777643       459999999999999999999998887665554

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.11  E-value=1.3e-09  Score=103.68  Aligned_cols=149  Identities=16%  Similarity=-0.028  Sum_probs=135.0

Q ss_pred             ccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhh--chhHHHHHHHHHHHHhhhhh
Q 011416          322 FSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY--QSNILTTGLLFGARMCVMGA  399 (486)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  399 (486)
                      .++.+++.+-++.......+.+++.+.+|++.||+|.|+++..+.++.++..++.+..  .+.+.+.+.-++.|++.+..
T Consensus        66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~  145 (466)
T KOG2532|consen   66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVL  145 (466)
T ss_pred             ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHH
Confidence            4678899999999999999999999999999999999999999999999998888873  34446677788999999999


Q ss_pred             hhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHh-hccchHHHHHHHHHHHHHHHHhcccc
Q 011416          400 FTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVAN-CHQMTAVVLLVVVIVTSILSVMLIPF  470 (486)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~  470 (486)
                      +|....+..+-.|+++|++..++.....++|.+++-.+.|.+.+. .||...|++.+++.++..++.+.+..
T Consensus       146 ~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~  217 (466)
T KOG2532|consen  146 FPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYS  217 (466)
T ss_pred             HhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999998 99999999999999888877766653

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=99.08  E-value=2.2e-07  Score=92.20  Aligned_cols=148  Identities=14%  Similarity=0.074  Sum_probs=120.4

Q ss_pred             hchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhh-hcchHHHHHHHHHHHHhhhhhhcCCC--------HHHHHH
Q 011416           48 GPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADN-YGRRMGFLGEALVTAGAGLLSSFSPN--------YITLIT  118 (486)
Q Consensus        48 ~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~G~r~~~~~~~~~~~~~~~~~~~a~~--------~~~l~~  118 (486)
                      ...+.+.+|.+.++...+...+....-+..+++|.++|+ +|+++.+.++.++..+|.++.+++..        ....++
T Consensus        11 vlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~   90 (654)
T TIGR00926        11 VLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLL   90 (654)
T ss_pred             HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHH
Confidence            344556789999999999999999999999999999996 59999999999999999888776421        233566


Q ss_pred             HHHHHHhccCcc-hhhhhhhccccCCC---chhHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CCcHHHHHHhHHH
Q 011416          119 LRCLVGVGLGSG-HVFLSWFLEFVPPS---NRGMWMVIFSSFWTIGSVSEAIGAWIIMPR-------LDWRWLLGLSSIP  187 (486)
Q Consensus       119 ~r~l~G~~~~~~-~~~~~~i~~~~~~~---~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~-------~~w~~~f~~~~~~  187 (486)
                      +-.+..+|.|+. +...+...|.++++   +|-..+.++..+.++|+.+++++...+.+.       .+|...|.+.++.
T Consensus        91 gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~  170 (654)
T TIGR00926        91 GLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAIL  170 (654)
T ss_pred             HHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHH
Confidence            777888899988 88888999888754   367788999999999999999998888643       3699999998888


Q ss_pred             HHHHHHHh
Q 011416          188 SFILLAFL  195 (486)
Q Consensus       188 ~~~~~~~~  195 (486)
                      .++.++..
T Consensus       171 m~ia~lvf  178 (654)
T TIGR00926       171 MILALIVF  178 (654)
T ss_pred             HHHHHHHH
Confidence            77765543

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=99.04  E-value=5.4e-06  Score=78.75  Aligned_cols=143  Identities=9%  Similarity=0.009  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHHhhHhhhhchhchhhhhcCC-----CcchhHHHHHHHHHHHHHH-HHHHhhhhhhhcchHHHHHHHHH
Q 011416           26 VLAYAGLGWVAEAMEIMILSFVGPTVKSEWNL-----SSTEESLITTSVFAGLVVG-AYAWGLVADNYGRRMGFLGEALV   99 (486)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----s~~~~g~~~s~~~~~~~i~-~~~~g~l~dr~G~r~~~~~~~~~   99 (486)
                      .+....+..++..+....+    -++.+.+.+     ..+.+.++-+...+...+. .++.+++++|++|++++-.....
T Consensus         8 k~~~~~l~fF~il~~Y~iL----R~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~   83 (472)
T TIGR00769         8 KFLPLFLMFFCILFNYTIL----RDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISP   83 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHH----HhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHH
Confidence            3444444444444444443    345555544     3357889988887777666 89999999999999998887777


Q ss_pred             HHHhhhhhhcC----CC---------------------------HHHHHHHHHHHHhccCcc-h-hhhhhhccccCCCch
Q 011416          100 TAGAGLLSSFS----PN---------------------------YITLITLRCLVGVGLGSG-H-VFLSWFLEFVPPSNR  146 (486)
Q Consensus       100 ~~~~~~~~~~a----~~---------------------------~~~l~~~r~l~G~~~~~~-~-~~~~~i~~~~~~~~r  146 (486)
                      +.+...++++.    ++                           .|...+..+...+-.... . .--..+.|.+..+|-
T Consensus        84 F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qa  163 (472)
T TIGR00769        84 FLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEA  163 (472)
T ss_pred             HHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence            66666655543    11                           222333333444433333 3 334788899999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011416          147 GMWMVIFSSFWTIGSVSEAIGAWIIM  172 (486)
Q Consensus       147 ~~~~~~~~~~~~~G~~i~~~l~~~l~  172 (486)
                      .|..++...+.++|.++++.+...+.
T Consensus       164 kRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       164 KRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999888876

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.03  E-value=1.8e-08  Score=98.08  Aligned_cols=139  Identities=9%  Similarity=-0.011  Sum_probs=103.6

Q ss_pred             hhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhc-----CCCH
Q 011416           39 MEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSF-----SPNY  113 (486)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~-----a~~~  113 (486)
                      ..........+.+.+...-+....+++.+...++..++.+++++++||+|+|+.+..+..+..++.+...+     .++.
T Consensus       245 ~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (473)
T PRK10429        245 IASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNA  324 (473)
T ss_pred             HHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhH
Confidence            33344444445555554445667778888777899999999999999999999999888776666554432     3466


Q ss_pred             HHHHHHHHHHHhccCcc-hhhhhhhccccC-------CCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 011416          114 ITLITLRCLVGVGLGSG-HVFLSWFLEFVP-------PSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDW  177 (486)
Q Consensus       114 ~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w  177 (486)
                      +.+++.-++.|++.+.. ....+++.|..+       .++.|..+|......-+|..+++.+.+.+.+..|+
T Consensus       325 ~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        325 LLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            77777888889988877 566678888755       34456689999999999999999999988765554

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.03  E-value=3.9e-09  Score=101.49  Aligned_cols=147  Identities=17%  Similarity=0.220  Sum_probs=119.1

Q ss_pred             HHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhc
Q 011416           30 AGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSF  109 (486)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~  109 (486)
                      ..+..++............+.+.++.--++...+.+..+..++..++.+++++++||+|+|+.+..+.++.+++.++..+
T Consensus       230 l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~  309 (428)
T PF13347_consen  230 LLLAFFLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFF  309 (428)
T ss_pred             HHHHHHHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHH
Confidence            33444555555555555566665554334467888899999999999999999999999999999999999999998888


Q ss_pred             CC--CHHHHHHHHHHHHhccCcc-hhhhhhhccccC-------CCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 011416          110 SP--NYITLITLRCLVGVGLGSG-HVFLSWFLEFVP-------PSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLD  176 (486)
Q Consensus       110 a~--~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~  176 (486)
                      .+  |.+.+++.-++.|++.+.. ....++++|..+       +++.|...|.......+|..+++.+.+.+.+..|
T Consensus       310 ~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~G  386 (428)
T PF13347_consen  310 LGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVG  386 (428)
T ss_pred             HHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhC
Confidence            86  9999999999999999988 666788888776       3446888999999999999999998888765544

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.03  E-value=2.6e-08  Score=89.42  Aligned_cols=172  Identities=17%  Similarity=0.090  Sum_probs=135.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHH
Q 011416          285 TILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITI  364 (486)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~  364 (486)
                      +.....+++...+..-..-...|++.           +.++.+..++++....+..+..++++..+++.+|+|+|+-+..
T Consensus        15 ~v~~t~lFfl~G~~~~l~diLip~l~-----------~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~l   83 (422)
T COG0738          15 FVLLTSLFFLWGFITCLNDILIPHLK-----------EVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVL   83 (422)
T ss_pred             HHHHHHHHHHHHHHhhcchhhHHHHH-----------HHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHH
Confidence            33444444445555555555556544           4557999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhh---hchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHH
Q 011416          365 MFTLSCLFLLPLVT---YQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVAL  441 (486)
Q Consensus       365 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l  441 (486)
                      ++.++++++.++.-   ..+.......+++.+.+.+...+..+.++....+++....-+.+...++.+|.+++|.+.+.+
T Consensus        84 gL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~l  163 (422)
T COG0738          84 GLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSL  163 (422)
T ss_pred             HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            99999999988863   445566777778889999999999999999999998888889999999999999999999998


Q ss_pred             HHh-------------------hccchHHHHHHHHHHHHHHHHhc
Q 011416          442 VAN-------------------CHQMTAVVLLVVVIVTSILSVML  467 (486)
Q Consensus       442 ~~~-------------------~g~~~~~~~~~~~~~~~~~~~~~  467 (486)
                      ..+                   ...+.++...+...++..+....
T Consensus       164 ils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~  208 (422)
T COG0738         164 ILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILL  208 (422)
T ss_pred             HHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence            873                   12445666666666655554443

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.01  E-value=4.1e-09  Score=104.10  Aligned_cols=144  Identities=17%  Similarity=0.143  Sum_probs=126.3

Q ss_pred             CCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHh
Q 011416          325 HPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSL  404 (486)
Q Consensus       325 ~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (486)
                      ..+.....+..+++.++..+|.++.|.++||+|||+++..+.++..++.+..++.++.+...+.-++.|++.++......
T Consensus       114 c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~  193 (521)
T KOG0255|consen  114 CDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGF  193 (521)
T ss_pred             eCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhH
Confidence            45667777888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhcccccc
Q 011416          405 IYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFET  472 (486)
Q Consensus       405 ~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (486)
                      .+..|.+++++|+.+..+ ......++.++|...+++..  +|...+++......+..++ +++.+|.
T Consensus       194 ~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es  257 (521)
T KOG0255|consen  194 GLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPES  257 (521)
T ss_pred             hhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcC
Confidence            999999999999999999 88888999999999998877  6777777777776666555 4444343

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.99  E-value=1.5e-08  Score=93.17  Aligned_cols=157  Identities=25%  Similarity=0.348  Sum_probs=127.1

Q ss_pred             HHHHHhhHhhhhchhchhhhhcCCCc--chhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcCC
Q 011416           34 WVAEAMEIMILSFVGPTVKSEWNLSS--TEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSP  111 (486)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a~  111 (486)
                      .+....+........+.+..+++.+.  .+.++..+.+.++..++.++.|.+.||+|||+.+..+.....++.++.++..
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~   90 (338)
T COG0477          11 ALLLGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAP   90 (338)
T ss_pred             HHHHHHhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCc
Confidence            33444666666777888888887776  5899999999999999999999999999999888888876666667777776


Q ss_pred             C--HHHHHHHHHHHHhccCcc-hhhhhhhccccCC-CchhHHHHHHHH-HHHHHHHHHHHHHHHHhcC--CCcHHHHHHh
Q 011416          112 N--YITLITLRCLVGVGLGSG-HVFLSWFLEFVPP-SNRGMWMVIFSS-FWTIGSVSEAIGAWIIMPR--LDWRWLLGLS  184 (486)
Q Consensus       112 ~--~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~~G~~i~~~l~~~l~~~--~~w~~~f~~~  184 (486)
                      +  .+.+++.|+++|++.+.. +...+++.|+.++ ++|+...+.... ...+|..+++.+++.+...  .+||..|...
T Consensus        91 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (338)
T COG0477          91 NVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLA  170 (338)
T ss_pred             cchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence            6  899999999999999877 7778899999987 688999998888 5888889998777776543  6899966665


Q ss_pred             HHHHHH
Q 011416          185 SIPSFI  190 (486)
Q Consensus       185 ~~~~~~  190 (486)
                      ......
T Consensus       171 ~~~~~~  176 (338)
T COG0477         171 ALLGLL  176 (338)
T ss_pred             HHHHHH
Confidence            555443

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=98.99  E-value=6.7e-08  Score=85.49  Aligned_cols=351  Identities=15%  Similarity=0.105  Sum_probs=189.5

Q ss_pred             HHHHHHHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhh-----hhcchHHHHH-H
Q 011416           23 QCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVAD-----NYGRRMGFLG-E   96 (486)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d-----r~G~r~~~~~-~   96 (486)
                      +...+.++.+.+.+.+...+..+ .+|.+.+.-|.|.++.+...-++ .-+. .-+.+.++.|     |+||||.-++ +
T Consensus        29 d~~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay-~P~s-LKllWaPiVDs~y~k~~GrrksWvvp~  105 (510)
T KOG3574|consen   29 DRSSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAY-WPFS-LKLLWAPIVDSVYSKRFGRRKSWVVPC  105 (510)
T ss_pred             hhhhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhh-hHHH-HHHHHHhhhHHHHHHhhccccceeeeh
Confidence            34455566677888998888888 89999998899988887654333 2222 3578899999     9999875332 3


Q ss_pred             HHHHHHhhhhhhc-----------CCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHH
Q 011416           97 ALVTAGAGLLSSF-----------SPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSE  164 (486)
Q Consensus        97 ~~~~~~~~~~~~~-----------a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~  164 (486)
                      ..+.+..+.+.+.           .++...+....++.-+.++.. .+.-.+.-....+++.|-+......+...|..++
T Consensus       106 q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~  185 (510)
T KOG3574|consen  106 QYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLG  185 (510)
T ss_pred             HHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhh
Confidence            3333333333222           234444444556666777777 5666777778888998888877777777777776


Q ss_pred             HHHHHHHhc-------CCCcH---------HHHHHhHHHHHHHHHHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCC
Q 011416          165 AIGAWIIMP-------RLDWR---------WLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTK  228 (486)
Q Consensus       165 ~~l~~~l~~-------~~~w~---------~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (486)
                      ..+--.+..       ..+|.         ...++.+.+.++.-.+..+..+++...    ..+|....++.        
T Consensus       186 ~~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~----~~~e~~~~i~~--------  253 (510)
T KOG3574|consen  186 NVVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDES----VDEELELGIHE--------  253 (510)
T ss_pred             cceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchh----hhhhhhcCHHH--------
Confidence            554333321       11222         233444555555433333333322111    00000000000        


Q ss_pred             CCCchhhhccccCCCCCCCCccchhhcccCCCCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011416          229 LPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISE  308 (486)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (486)
                                                              ..+.+++.++-+..+.+   .......-+.+.+-....+.
T Consensus       254 ----------------------------------------~yk~l~~vLklk~v~~l---a~i~lt~K~gf~a~da~t~L  290 (510)
T KOG3574|consen  254 ----------------------------------------SYKLLRDVLKLKSVRWL---AGILLTGKLGFQAADALTSL  290 (510)
T ss_pred             ----------------------------------------HHHHHHHHHcCccHHHH---HHHHHHHHHHhhhhhhccch
Confidence                                                    00123333333322222   22222222222222222221


Q ss_pred             hccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhc----------hhHHHHHHHHHHHHHHHHHh-
Q 011416          309 LSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAG----------RKLSITIMFTLSCLFLLPLV-  377 (486)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g----------~~~~~~~~~~~~~~~~~~~~-  377 (486)
                                 ...++|.+..+.++..    +..++..++.+....|+.          |+....+........+.... 
T Consensus       291 -----------kLle~Gv~ke~Lal~~----v~~~plqI~l~~~~gk~ta~~~pl~~~lka~~~R~~~~~~~t~Lv~~~~  355 (510)
T KOG3574|consen  291 -----------KLLEHGVPKEELALIA----VPLVPLQIALPLYIGKWTAGPRPLNVFLKAVPYRLGGGLVQTALVWWTP  355 (510)
T ss_pred             -----------HHHHcCCChhHheeee----eehhhHHHhhhhhheeecCCCCcchHHHHhhhHHHHHHHHHHHHHhhhc
Confidence                       1235678887766554    444455555555555442          22222222222222222111 


Q ss_pred             hhch---------hHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011416          378 TYQS---------NILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH  446 (486)
Q Consensus       378 ~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g  446 (486)
                      ....         ....+....+.+.+....+...++..+++.++...|+.+.+.|+..++|+-.-..+..++.|..+
T Consensus       356 ~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~lt  433 (510)
T KOG3574|consen  356 TLGHSDGTFPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGLT  433 (510)
T ss_pred             ccccCCCceeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccCc
Confidence            1111         11122223344445555566778889999999999999999999999999888888888888654

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.98  E-value=2.4e-08  Score=98.09  Aligned_cols=141  Identities=21%  Similarity=0.130  Sum_probs=120.2

Q ss_pred             hhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhhccc
Q 011416          330 NLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAE  409 (486)
Q Consensus       330 ~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (486)
                      +.++..+...++..++.++.|+++|++|||+.+..+.++..++.++.....+...+.+.-++.|++.++...+...+.+|
T Consensus        90 ~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sE  169 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISE  169 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhh
Confidence            44788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHHHHhcccccc
Q 011416          410 IYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANC--HQMTAVVLLVVVIVTSILSVMLIPFET  472 (486)
Q Consensus       410 ~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (486)
                      +.|++.||...+..+....+|..++ .+.+...++.  +|...+.+..+.+++..+. .++.||+
T Consensus       170 iap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pes  232 (513)
T KOG0254|consen  170 IAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPES  232 (513)
T ss_pred             cCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCC
Confidence            9999999999999999888877777 5556655543  6776666666666666655 4554444

>PRK09669 putative symporter YagG; Provisional

Probab=98.97  E-value=1.2e-08  Score=98.60  Aligned_cols=119  Identities=13%  Similarity=0.053  Sum_probs=91.6

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhh-hc-CCCHHHHHHHHHHHHhccCcc-hhhhh
Q 011416           59 STEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLS-SF-SPNYITLITLRCLVGVGLGSG-HVFLS  135 (486)
Q Consensus        59 ~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~-~~-a~~~~~l~~~r~l~G~~~~~~-~~~~~  135 (486)
                      .+..+.+.....+...++.+++++++||+|+|+.+..+.++.++..... .. .++.+.+++..++.|++.+.. +...+
T Consensus       263 ~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~a  342 (444)
T PRK09669        263 PDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWS  342 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344556666778888899999999999999999998877666544322 22 357777888889999999888 66678


Q ss_pred             hhccccC-------CCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 011416          136 WFLEFVP-------PSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDW  177 (486)
Q Consensus       136 ~i~~~~~-------~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w  177 (486)
                      +++|..+       +++.|...+.......+|..+|+.+++.+.+..|+
T Consensus       343 m~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        343 MFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             HHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            8887775       23346778899999999999999999998776665

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.93  E-value=2.3e-08  Score=86.17  Aligned_cols=138  Identities=17%  Similarity=0.072  Sum_probs=105.6

Q ss_pred             HHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH
Q 011416          294 GNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFL  373 (486)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~  373 (486)
                      ......|.+..|.+++-           +..|+++.+.........++..+| ++.|.+.||+|++.++.++.+...+++
T Consensus        13 ~~~Gt~Y~Fs~yS~~Lk-----------~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY   80 (250)
T PF06813_consen   13 LCSGTTYTFSAYSPQLK-----------SRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGY   80 (250)
T ss_pred             HhcCcccchhhhhHHHH-----------HHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            34456677777777665           567899999999999999998875 889999999999999999999999998


Q ss_pred             HHHhh------h-chhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 011416          374 LPLVT------Y-QSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVAN  444 (486)
Q Consensus       374 ~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~  444 (486)
                      ..+..      . .+.|.+.+..++.+.+.....+.......+.+| ++||++.|+.-....+++.+...+...+.+.
T Consensus        81 ~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~  157 (250)
T PF06813_consen   81 GLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD  157 (250)
T ss_pred             HHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence            87765      1 233444444444445544455566666678888 5699999999999999999988887766654

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=98.93  E-value=3.2e-06  Score=82.46  Aligned_cols=174  Identities=13%  Similarity=0.092  Sum_probs=127.4

Q ss_pred             hHHHHHHHHHHHHHHHHhhH-hhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhh-cchHHHHHHHHH
Q 011416           22 YQCFVLAYAGLGWVAEAMEI-MILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNY-GRRMGFLGEALV   99 (486)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-G~r~~~~~~~~~   99 (486)
                      ..|.....+.......-+.. ......+..+.++++.+...+.-..+.+.-......+..+.++|-| ||-+++.++.++
T Consensus        34 g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i  113 (571)
T KOG1237|consen   34 GGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLI  113 (571)
T ss_pred             chhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            34544444333333333322 3346677888899999998888899999999999999999999976 898999988888


Q ss_pred             HHHhhhhhhcCC----------------------C---HHHHHHHHHHHHhccCcc-hhhhhhhccccC---CC---chh
Q 011416          100 TAGAGLLSSFSP----------------------N---YITLITLRCLVGVGLGSG-HVFLSWFLEFVP---PS---NRG  147 (486)
Q Consensus       100 ~~~~~~~~~~a~----------------------~---~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~---~~---~r~  147 (486)
                      ..++..+..++.                      +   ...++.+.-+..+|.|+. +...++-+|-++   ++   ++.
T Consensus       114 ~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~  193 (571)
T KOG1237|consen  114 SLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIP  193 (571)
T ss_pred             HHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcc
Confidence            777754432211                      1   234666677788899988 877788888887   32   223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHhHHHHHHHHHHh
Q 011416          148 MWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFL  195 (486)
Q Consensus       148 ~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~  195 (486)
                      ..+.++....++|..++..+..+.-++.+|...|.+..+...+.++++
T Consensus       194 ~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF  241 (571)
T KOG1237|consen  194 SFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIF  241 (571)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHH
Confidence            678899999999999999888888888999999988877766654443

>TIGR00788 fbt folate/biopterin transporter

Probab=98.92  E-value=1.3e-08  Score=98.36  Aligned_cols=150  Identities=13%  Similarity=0.131  Sum_probs=119.8

Q ss_pred             hhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhc----------CCCHHHHHHHH
Q 011416           51 VKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSF----------SPNYITLITLR  120 (486)
Q Consensus        51 ~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~----------a~~~~~l~~~r  120 (486)
                      ..+.+|.++.+.|.+.+...++..++....+++.+|++.|+++.++.++.+++......          .++.+.++..-
T Consensus       279 ~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~  358 (468)
T TIGR00788       279 TTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDS  358 (468)
T ss_pred             EcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehh
Confidence            34678999999999999999999999999999999999999999999999988755431          13444555667


Q ss_pred             HHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----cHHHHHHh---HHHHHHH
Q 011416          121 CLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLD-----WRWLLGLS---SIPSFIL  191 (486)
Q Consensus       121 ~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~-----w~~~f~~~---~~~~~~~  191 (486)
                      ++.+++.+.. .+...++.+..|++++|...++..+..++|..+++.+++.+.+..|     ++..+...   .+..++.
T Consensus       359 ~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~  438 (468)
T TIGR00788       359 IIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLP  438 (468)
T ss_pred             HHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHH
Confidence            8888888877 6778899999999999999999999999999999999999988766     44444332   2333333


Q ss_pred             HHHhhccCC
Q 011416          192 LAFLGFQPE  200 (486)
Q Consensus       192 ~~~~~~~~e  200 (486)
                      +.+.+++|+
T Consensus       439 l~~~~llP~  447 (468)
T TIGR00788       439 LPLLHLLPR  447 (468)
T ss_pred             HHHHHhCCC
Confidence            444456785

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.90  E-value=5.4e-08  Score=92.90  Aligned_cols=152  Identities=14%  Similarity=0.055  Sum_probs=130.4

Q ss_pred             ccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhh
Q 011416          322 FSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFT  401 (486)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (486)
                      ++.+....+.+...+.+.++.+++.+.++.+.||++..+.+....+...+..++.....+.+...+.-++.|++.+..+|
T Consensus        74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP  153 (495)
T KOG2533|consen   74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWP  153 (495)
T ss_pred             cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccch
Confidence            45567778889999999999999999999999999977666666655555554444477888899999999999999999


Q ss_pred             hHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHH------hhccchHHHHHHHHHHHHHHHHhccccccc
Q 011416          402 VSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVA------NCHQMTAVVLLVVVIVTSILSVMLIPFETK  473 (486)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (486)
                      ....++...+.+++|+.-+|+.++..++|+++|+.+...+.+      ..||++.|++-+++.++..++.++..|+..
T Consensus       154 ~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P  231 (495)
T KOG2533|consen  154 GVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNP  231 (495)
T ss_pred             HHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCCh
Confidence            999999999999999999999999999999999999988743      457999999999999999988888776543

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.86  E-value=1e-08  Score=70.92  Aligned_cols=81  Identities=12%  Similarity=0.135  Sum_probs=75.7

Q ss_pred             HHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcCCCHHHH
Q 011416           37 EAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITL  116 (486)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a~~~~~l  116 (486)
                      .++.+..+.|.+|.+++|.++|.++.|++.+..++||.++.+...++.++..+++.+..+.+...+.++.+++.++.+.+
T Consensus         4 mGigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w   83 (85)
T PF06779_consen    4 MGIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW   83 (85)
T ss_pred             hhhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence            45778999999999999999999999999999999999999999999999889999999999999999999999987765


Q ss_pred             H
Q 011416          117 I  117 (486)
Q Consensus       117 ~  117 (486)
                      .
T Consensus        84 ~   84 (85)
T PF06779_consen   84 S   84 (85)
T ss_pred             h
Confidence            3

Note that many members are hypothetical proteins.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.84  E-value=3.2e-08  Score=87.31  Aligned_cols=129  Identities=16%  Similarity=0.108  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcCCCHH----HHHHHHHHHHhccCcchhhhhhhccccCCC
Q 011416           69 VFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYI----TLITLRCLVGVGLGSGHVFLSWFLEFVPPS  144 (486)
Q Consensus        69 ~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a~~~~----~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~  144 (486)
                      ..+.-.-|.++.+.+.||+|||+.+..+.+++++..++...+.+-.    .++.+|++..   |.+.+.+.|..|.+|.+
T Consensus       390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafis---g~fqvaYvYtPEVyPTa  466 (528)
T KOG0253|consen  390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFIS---GAFQVAYVYTPEVYPTA  466 (528)
T ss_pred             HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHh---chheEEEEecCcccchh
Confidence            3456677889999999999999999999999999988877664322    3445565542   33366778888999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHhHHHHHHHHHHhhccCCCc
Q 011416          145 NRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESP  202 (486)
Q Consensus       145 ~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~e~~  202 (486)
                      -|+...|.-....-+|.++.|.++  +.....-..+..+.+.+.++..+...++|-.+
T Consensus       467 vRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEt  522 (528)
T KOG0253|consen  467 VRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIET  522 (528)
T ss_pred             hhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeecc
Confidence            999999999999999999999999  33334444556667777777777777777544

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.83  E-value=2.5e-07  Score=86.50  Aligned_cols=144  Identities=17%  Similarity=0.173  Sum_probs=108.7

Q ss_pred             HHHHHHhhHhhhhchhchh-hhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcCC
Q 011416           33 GWVAEAMEIMILSFVGPTV-KSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSP  111 (486)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a~  111 (486)
                      .+++........+.....+ .--+|.+..+..+.......+..++.+++.++.+|+|+|+++.++.++..++.++..+.+
T Consensus       244 ~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~  323 (467)
T COG2211         244 MNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTP  323 (467)
T ss_pred             HHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhc
Confidence            3344444444444444443 334566777778888888888888899999999999999999999999999999888876


Q ss_pred             --CHHHHHHHHHHHHhccCcc-hhhhhhhccccC-------CCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 011416          112 --NYITLITLRCLVGVGLGSG-HVFLSWFLEFVP-------PSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLD  176 (486)
Q Consensus       112 --~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~  176 (486)
                        +.+.+++..++.++|.+.. +...++++|..+       .+.-|...+......=+|.+++..+.++..+..|
T Consensus       324 ~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~G  398 (467)
T COG2211         324 AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIG  398 (467)
T ss_pred             CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence              7888889999999999888 555577766553       2344777788888888888888888777665443

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.79  E-value=2.7e-07  Score=81.78  Aligned_cols=159  Identities=14%  Similarity=0.084  Sum_probs=125.9

Q ss_pred             HHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhh-cchHHHHHHHHHHHHhhhhhhcCCCHH
Q 011416           36 AEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNY-GRRMGFLGEALVTAGAGLLSSFSPNYI  114 (486)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-G~r~~~~~~~~~~~~~~~~~~~a~~~~  114 (486)
                      +..+..++.-.-+|.+..|-|+|..+.|++.+...+.....++....+++|. .+|+..+....++.++...+.+.+.-.
T Consensus       219 lqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~  298 (395)
T COG2807         219 LQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQL  298 (395)
T ss_pred             hhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhH
Confidence            3344444555568999999999999999999999999999999999999976 567778888888888888888877544


Q ss_pred             HHHHHHHHHHhccCcc-hhhhhhhcccc-CCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CcHHHHHHhHHHHHHH
Q 011416          115 TLITLRCLVGVGLGSG-HVFLSWFLEFV-PPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRL-DWRWLLGLSSIPSFIL  191 (486)
Q Consensus       115 ~l~~~r~l~G~~~~~~-~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~-~w~~~f~~~~~~~~~~  191 (486)
                      .+.. -++.|+|.|.. +.....+.+.. ++++-++..++.+....+=..+||.+.|++.|.. +|+..+...+...+..
T Consensus       299 ~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m  377 (395)
T COG2807         299 PILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLM  377 (395)
T ss_pred             HHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHH
Confidence            4333 48999998888 77878777554 4566677778888877777888999999998855 6999988877777766


Q ss_pred             HHHh
Q 011416          192 LAFL  195 (486)
Q Consensus       192 ~~~~  195 (486)
                      .+.-
T Consensus       378 ~i~G  381 (395)
T COG2807         378 LIFG  381 (395)
T ss_pred             HHHH
Confidence            5543

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=98.74  E-value=9.2e-07  Score=81.85  Aligned_cols=141  Identities=13%  Similarity=0.071  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHhhHhhhhchhchhhhh--cCCCcchhHHHHHHHHHHHHHHHHHHhhhhh-----hhcchHHHHH------
Q 011416           29 YAGLGWVAEAMEIMILSFVGPTVKSE--WNLSSTEESLITTSVFAGLVVGAYAWGLVAD-----NYGRRMGFLG------   95 (486)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d-----r~G~r~~~~~------   95 (486)
                      ++.+.+++.+...+.....+|.+.++  -+.|.+|.|...-+ ..-+. .-+++.++.|     |+||||.-++      
T Consensus         4 lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla-~~PfS-lKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~   81 (544)
T PF13000_consen    4 LLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLA-SYPFS-LKLLWAPIVDSVYSKRIGRRKSWIIPIQYLS   81 (544)
T ss_pred             HHHHHHHHcCcccccccccchhhhccccCCCChhHheeeeee-echhH-HHHhhhhhhhhhcccccCCcchhhhHHHHHH
Confidence            45566788887777765667888887  68888888764322 22222 2456666666     8999986443      


Q ss_pred             HHHHHHHhhhh----------hhcC-------CCH--HHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHH
Q 011416           96 EALVTAGAGLL----------SSFS-------PNY--ITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSS  155 (486)
Q Consensus        96 ~~~~~~~~~~~----------~~~a-------~~~--~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~  155 (486)
                      |..+..++.-.          -.+.       ++.  ..+....++.=+-++.. .++-.+.-....+++++.|......
T Consensus        82 g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtv  161 (544)
T PF13000_consen   82 GILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQTV  161 (544)
T ss_pred             HHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHHh
Confidence            33333333322          0000       011  12333333343444555 5555677777788889888877777


Q ss_pred             HHHHHHHHHHHHHHHH
Q 011416          156 FWTIGSVSEAIGAWII  171 (486)
Q Consensus       156 ~~~~G~~i~~~l~~~l  171 (486)
                      +.+.|..++..+--.+
T Consensus       162 G~~~Gyfls~tvFlal  177 (544)
T PF13000_consen  162 GQTAGYFLSFTVFLAL  177 (544)
T ss_pred             HhhhhHHHHHHHHHhh
Confidence            7777777766554444

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>PRK11462 putative transporter; Provisional

Probab=98.73  E-value=3.5e-07  Score=88.47  Aligned_cols=119  Identities=13%  Similarity=0.006  Sum_probs=80.3

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcCCC--HHHHHHHHHHHHhccCcc-hhhhh
Q 011416           59 STEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPN--YITLITLRCLVGVGLGSG-HVFLS  135 (486)
Q Consensus        59 ~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a~~--~~~l~~~r~l~G~~~~~~-~~~~~  135 (486)
                      ....+.+.+.+.++..++.+++++++||+|+|+++..+..+.++..++..+.++  ...+++.-++.|++.+.. +...+
T Consensus       262 ~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~  341 (460)
T PRK11462        262 PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWV  341 (460)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345567777888899999999999999999999877655544443333333322  334445556677776655 43445


Q ss_pred             hhccccC-------CCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 011416          136 WFLEFVP-------PSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDW  177 (486)
Q Consensus       136 ~i~~~~~-------~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w  177 (486)
                      ++.|..+       +++.|...+......-+|..+++.+++.+.+..|+
T Consensus       342 m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy  390 (460)
T PRK11462        342 MMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY  390 (460)
T ss_pred             HHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            6665554       33446666777788889999999988887654443

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.73  E-value=4.1e-08  Score=91.06  Aligned_cols=156  Identities=13%  Similarity=0.074  Sum_probs=135.4

Q ss_pred             hhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcCCCHHHHHHHHH
Q 011416           42 MILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRC  121 (486)
Q Consensus        42 ~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r~  121 (486)
                      ..+-..+-.-.||++..+...|.....-..+-.+.-++.+++.+|+|+-+++.+++.+.++=.+..+..+|.|+.+-..+
T Consensus       388 ~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPiei  467 (618)
T KOG3762|consen  388 GLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEI  467 (618)
T ss_pred             HHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHH
Confidence            33333344457888888888898888889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhccCcc-hhhhhhhccccCCCchhHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCcHHHHHHhHHHHHHHHHHhhc
Q 011416          122 LVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSS-FWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGF  197 (486)
Q Consensus       122 l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~i~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~  197 (486)
                      ++|+..+.. ....+|++...||+-|..+-++.+. ..++|--+|.+++|.+.+.++=|..|...++.+++.++....
T Consensus       468 lqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~  545 (618)
T KOG3762|consen  468 LQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFIS  545 (618)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999 6777899999999999999888754 567899999999999999999999999988887776554433

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.70  E-value=1.1e-07  Score=86.73  Aligned_cols=114  Identities=19%  Similarity=0.089  Sum_probs=92.5

Q ss_pred             CCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhh---ch----hHHHHHHHHHHHHhhh
Q 011416          325 HPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY---QS----NILTTGLLFGARMCVM  397 (486)
Q Consensus       325 ~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~~~~~~~  397 (486)
                      ++++...+.......++.++|+++.|++.||+|||++....++++.++.++....   ++    .+.+...=+++|++.+
T Consensus        80 ~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIG  159 (538)
T KOG0252|consen   80 HYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIG  159 (538)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhcccc
Confidence            3667778888899999999999999999999999999999999988888755541   11    2344455567899999


Q ss_pred             hhhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHH
Q 011416          398 GAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVA  438 (486)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~  438 (486)
                      +=+|+..+..+|....+.||+-.+.+.+++..|...|.++.
T Consensus       160 GDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt  200 (538)
T KOG0252|consen  160 GDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVA  200 (538)
T ss_pred             CCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHH
Confidence            99999999999999999999999888777776655555444

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.66  E-value=3.6e-06  Score=76.63  Aligned_cols=147  Identities=17%  Similarity=0.137  Sum_probs=121.9

Q ss_pred             chhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhh-hhcchHHHHHHHHHHHHhhhhh---hcCCCHHHHHHHHHHHH
Q 011416           49 PTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVAD-NYGRRMGFLGEALVTAGAGLLS---SFSPNYITLITLRCLVG  124 (486)
Q Consensus        49 ~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d-r~G~r~~~~~~~~~~~~~~~~~---~~a~~~~~l~~~r~l~G  124 (486)
                      |+=.+-||+|..|...+...+..|..++....|++.. |.++|+.-.+++...+++..+.   +...+.+.+...-++.|
T Consensus       233 Pygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G  312 (403)
T PF03209_consen  233 PYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLG  312 (403)
T ss_pred             CchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence            3445669999999999999999999999999999888 6788888888888887776654   44578899999999999


Q ss_pred             hccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCCcHHHHHHhHHHHHHHHH
Q 011416          125 VGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMP----------RLDWRWLLGLSSIPSFILLA  193 (486)
Q Consensus       125 ~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~----------~~~w~~~f~~~~~~~~~~~~  193 (486)
                      ++.|.. ....+.+.+...+++.|..+|.+.....++..++..+++.+.|          ..+|..+|.+.++..++.+.
T Consensus       313 ~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~  392 (403)
T PF03209_consen  313 LGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALV  392 (403)
T ss_pred             HhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHH
Confidence            999999 5556788899999999999999999999999999999988654          23577788887776666554


Q ss_pred             Hh
Q 011416          194 FL  195 (486)
Q Consensus       194 ~~  195 (486)
                      +.
T Consensus       393 ll  394 (403)
T PF03209_consen  393 LL  394 (403)
T ss_pred             HH
Confidence            43

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.58  E-value=9.7e-10  Score=106.67  Aligned_cols=143  Identities=17%  Similarity=0.108  Sum_probs=114.3

Q ss_pred             chhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhc---hhHHHHHHHHHHHHhhhhhhhhHhh
Q 011416          329 ANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQ---SNILTTGLLFGARMCVMGAFTVSLI  405 (486)
Q Consensus       329 ~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  405 (486)
                      ...+.......++.++|.++.|++.||+|||+.+..+..+..++.++..+.+   +.+...+.-++.|++.++..+....
T Consensus        46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~  125 (451)
T PF00083_consen   46 LLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPI  125 (451)
T ss_pred             HHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4567788889999999999999999999999999999999999999888877   7888888889999999999999999


Q ss_pred             hccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhh---ccchHHHHHHHHHHHHHHHHhcccccc
Q 011416          406 YAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANC---HQMTAVVLLVVVIVTSILSVMLIPFET  472 (486)
Q Consensus       406 ~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (486)
                      ++.|..|+++|+...++.+....+|..++..+.-.+.+..   +|...+.......++..+.. .+.||+
T Consensus       126 ~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~-~~~pES  194 (451)
T PF00083_consen  126 YISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLR-FFLPES  194 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence            9999999999999999999888888888777654332222   35555555555554443333 334443

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.56  E-value=4.2e-07  Score=62.67  Aligned_cols=71  Identities=17%  Similarity=0.160  Sum_probs=61.9

Q ss_pred             HHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHH
Q 011416           30 AGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVT  100 (486)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~  100 (486)
                      +...+++.+...+...|.+|.+.++.|+|..|+|.+.++..+...++.+++|.++||+++++.++....++
T Consensus         5 lk~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen    5 LKAFYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            34556777777888888999999999999999999999999999999999999999999988877765543

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.55  E-value=1.6e-05  Score=71.32  Aligned_cols=152  Identities=14%  Similarity=-0.018  Sum_probs=110.8

Q ss_pred             cCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhh
Q 011416          323 SHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTV  402 (486)
Q Consensus       323 ~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (486)
                      ++|++..+++..+........+...+.|.+.||+|||+.-+...++..++++.-- .++.+.+++.=++.|++....++.
T Consensus        63 ~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~-~~~~~~L~~GRvlgGiaTSLLfS~  141 (354)
T PF05631_consen   63 SYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKH-SSNYPVLLLGRVLGGIATSLLFSA  141 (354)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHHHH
Confidence            4589999999999999999999999999999999999998888888887776443 456667777778888888887776


Q ss_pred             Hhhhc-cc----cccccchhhHhHHHHH-HHHHHHHHHHHHHHHHHHhhcc--chHHHHHHHHHHHHHHHHhcccccccC
Q 011416          403 SLIYA-AE----IYPTSVRSTGAGAANA-MGRIGGMVCPLVAVALVANCHQ--MTAVVLLVVVIVTSILSVMLIPFETKG  474 (486)
Q Consensus       403 ~~~~~-~~----~~~~~~~~~~~g~~~~-~~~~g~~~~~~i~g~l~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (486)
                      .-++. .|    -+|++..+...+.... .+.+-.+.+..+...+.+..+.  ..+|.....+.+++.++.....+|..+
T Consensus       142 FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg  221 (354)
T PF05631_consen  142 FESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYG  221 (354)
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCC
Confidence            65543 23    3555555665555552 3344555666666666676554  678888888888888777766666654


Q ss_pred             C
Q 011416          475 Q  475 (486)
Q Consensus       475 ~  475 (486)
                      .
T Consensus       222 ~  222 (354)
T PF05631_consen  222 D  222 (354)
T ss_pred             C
Confidence            4

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=98.49  E-value=0.00015  Score=68.97  Aligned_cols=108  Identities=12%  Similarity=0.040  Sum_probs=70.1

Q ss_pred             hhHHHHHHHHhhHHHHHHHHHHHHHHhchh-HHHHHHHHHHHHHHHHHh------------hhchhHHHHHHHHHHHHhh
Q 011416          330 NLYIDEFITSLAEIPGLLLAAILVDTAGRK-LSITIMFTLSCLFLLPLV------------TYQSNILTTGLLFGARMCV  396 (486)
Q Consensus       330 ~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~-~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~  396 (486)
                      ..-.....+.++..+|+.+..+..- -++| +.+.+..+.=.+..-++.            ..++.+..++..++.|+..
T Consensus       308 ~~~i~~~~fNvgD~vGR~~~~~~~~-p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltn  386 (437)
T TIGR00939       308 YPIICFLLFNLFDWLGRSLTSKFMW-PDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSN  386 (437)
T ss_pred             HHHHHHHHHHHHHHHHhhhhheeEe-eCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhh
Confidence            4456677888999999986654311 1122 122222222222211111            1235566777888899999


Q ss_pred             hhhhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHH
Q 011416          397 MGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVA  438 (486)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~  438 (486)
                      |...+..+.+..+..++++|..+-.+...+-.+|-.+|..+.
T Consensus       387 Gy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~  428 (437)
T TIGR00939       387 GYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLS  428 (437)
T ss_pred             hHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988888887777777777777777653

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=98.49  E-value=0.00064  Score=63.46  Aligned_cols=152  Identities=11%  Similarity=0.013  Sum_probs=101.1

Q ss_pred             CCCchHHHHHHHHHHHHHHHHhhHhhhhchhchhhhhcCC---CcchhHHHHHHHHH-HHHHHHHHHhhhhhhhcchHHH
Q 011416           18 GFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNL---SSTEESLITTSVFA-GLVVGAYAWGLVADNYGRRMGF   93 (486)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---s~~~~g~~~s~~~~-~~~i~~~~~g~l~dr~G~r~~~   93 (486)
                      +.++..+..+..+.+..++..+....+-    .+.+.+.+   .+..+.++-+..-+ +..+..++.+++.+++.+.+++
T Consensus        20 pi~r~E~~kflpl~Ll~f~I~~ny~~lR----~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF   95 (509)
T COG3202          20 PIRRYELKKFLPLALLFFCILFNYNLLR----SLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVF   95 (509)
T ss_pred             eccHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHH
Confidence            3455666666666666666666555543    34444443   45667777777777 7788899999999999999998


Q ss_pred             HHHHHHHHHhhhhhhcC---------CC-----------------------HHHHHHHHHHHHhccCcc-h-hhhhhhcc
Q 011416           94 LGEALVTAGAGLLSSFS---------PN-----------------------YITLITLRCLVGVGLGSG-H-VFLSWFLE  139 (486)
Q Consensus        94 ~~~~~~~~~~~~~~~~a---------~~-----------------------~~~l~~~r~l~G~~~~~~-~-~~~~~i~~  139 (486)
                      -+-+..+....+++++.         ++                       .|...+...+.=+=.... . .-.....|
T Consensus        96 ~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNe  175 (509)
T COG3202          96 YIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANE  175 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88777666666665542         11                       122222222222222222 1 12245668


Q ss_pred             ccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011416          140 FVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMP  173 (486)
Q Consensus       140 ~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~  173 (486)
                      .+..+|-.|..++++.+.+++..++..+..++.+
T Consensus       176 itt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k  209 (509)
T COG3202         176 ITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK  209 (509)
T ss_pred             hhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            8888999999999999999999999988888865

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.47  E-value=8e-06  Score=64.95  Aligned_cols=112  Identities=13%  Similarity=0.110  Sum_probs=92.3

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHhccCcc-hhhhhhh
Q 011416           59 STEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWF  137 (486)
Q Consensus        59 ~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~-~~~~~~i  137 (486)
                      +..--.-.++.+....+++++.+.+.+++|.|+.++++.+...+-.... +-++.+.++.+-++.|++.+.. .....++
T Consensus        36 ~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~yl  114 (156)
T PF05978_consen   36 AGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYL  114 (156)
T ss_pred             ccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHH
Confidence            3333344566777788888999999999999999999999988655443 5578889999999999999999 5555789


Q ss_pred             ccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011416          138 LEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWII  171 (486)
Q Consensus       138 ~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l  171 (486)
                      .+..++++|++..+++......+.++|.++...+
T Consensus       115 t~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~  148 (156)
T PF05978_consen  115 TSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI  148 (156)
T ss_pred             HHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999888888776654

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.38  E-value=2e-05  Score=74.99  Aligned_cols=138  Identities=20%  Similarity=0.163  Sum_probs=112.6

Q ss_pred             HHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchh
Q 011416          338 TSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRS  417 (486)
Q Consensus       338 ~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (486)
                      .++..++.+...|.++||+|||..+......+.+....+.+..  ++..+ ..-...+....+....+++++....+.|.
T Consensus        71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~--~~~~~-~~~l~g~~~~~~s~~~a~vadis~~~~R~  147 (463)
T KOG2816|consen   71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG--YWFFL-LLGLSGGFSAIFSVGFAYVADISSEEERS  147 (463)
T ss_pred             hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH--HHHhh-hcccccchhhhhhhhhhheeeccchhHHH
Confidence            3677888889999999999999999888888777766666544  22222 22223344556678899999999999999


Q ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhcccccccCCCcc
Q 011416          418 TGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELS  478 (486)
Q Consensus       418 ~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (486)
                      ...|+.+.....+..++|.+.+.+.+..|....+.+..+..++..+......||+...+.+
T Consensus       148 ~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~  208 (463)
T KOG2816|consen  148 SSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKER  208 (463)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccc
Confidence            9999999999999999999999999999999999999999999999999888887655443

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=98.37  E-value=0.0027  Score=61.08  Aligned_cols=154  Identities=10%  Similarity=0.004  Sum_probs=95.5

Q ss_pred             CCchHHHHHHHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHH-HHHHHHHHHhhhhhhhcchHHHHHHH
Q 011416           19 FGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFA-GLVVGAYAWGLVADNYGRRMGFLGEA   97 (486)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~-~~~i~~~~~g~l~dr~G~r~~~~~~~   97 (486)
                      ..+..+..+..+.+..++..+.....-..-..+.-.-. ..+.+..+-....+ ...+......++++|+++.+++-+..
T Consensus        18 i~~~E~~k~~~l~~m~f~i~f~y~~lR~~KD~lvvt~~-gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~   96 (491)
T PF03219_consen   18 IHRSELKKFLPLALMFFFILFNYTILRDLKDTLVVTAQ-GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIII   96 (491)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEecC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            34555666666666666666665554433333221111 45556666554444 45566778999999999999887766


Q ss_pred             HHHHHhhhhhhcC---------CC----------------------HHHHHHHHHHHHhccCcc-hh-hhhhhccccCCC
Q 011416           98 LVTAGAGLLSSFS---------PN----------------------YITLITLRCLVGVGLGSG-HV-FLSWFLEFVPPS  144 (486)
Q Consensus        98 ~~~~~~~~~~~~a---------~~----------------------~~~l~~~r~l~G~~~~~~-~~-~~~~i~~~~~~~  144 (486)
                      ..+.....++++.         ++                      .|.+.+.-++.-+-.... +. --.+..|.++.+
T Consensus        97 ~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~  176 (491)
T PF03219_consen   97 IPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVE  176 (491)
T ss_pred             HHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence            6655555444432         11                      112222222222222222 22 236677999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011416          145 NRGMWMVIFSSFWTIGSVSEAIGAWIIMP  173 (486)
Q Consensus       145 ~r~~~~~~~~~~~~~G~~i~~~l~~~l~~  173 (486)
                      |-.|..+++..+.++|.++++.+...+.+
T Consensus       177 eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  177 EAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988888776

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.33  E-value=1.7e-05  Score=79.10  Aligned_cols=145  Identities=11%  Similarity=0.014  Sum_probs=110.0

Q ss_pred             CCCCCchhHHHHHHHHhhHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHhhhch--------hHHHHHHHHHHHH
Q 011416          324 HHPQDANLYIDEFITSLAEIPGLLLAAILVDT-AGRKLSITIMFTLSCLFLLPLVTYQS--------NILTTGLLFGARM  394 (486)
Q Consensus       324 ~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~  394 (486)
                      .+.+...+......+....-+..+++|++.|+ +|+++.+.++.++..++..++.+...        ....+..+.+..+
T Consensus        18 lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~   97 (654)
T TIGR00926        18 LGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIAL   97 (654)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHh
Confidence            36777777777777777777788899999997 69999999999998888877765211        1234566677778


Q ss_pred             hhhhhhhhHhhhcccccccc---chhhHhHHHHHHHHHHHHHHHHHHHHHHHhh-------ccchHHHHHHHHHHHHHHH
Q 011416          395 CVMGAFTVSLIYAAEIYPTS---VRSTGAGAANAMGRIGGMVCPLVAVALVANC-------HQMTAVVLLVVVIVTSILS  464 (486)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~-------g~~~~~~~~~~~~~~~~~~  464 (486)
                      +.++.-|...+...|.++++   .+...+.+.....++|+.+++.+.+++.+..       +|...|.+.+++++++.++
T Consensus        98 G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lv  177 (654)
T TIGR00926        98 GTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIV  177 (654)
T ss_pred             hccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHH
Confidence            88888898888888888653   3677888888999999999999999987553       4666777777777766665


Q ss_pred             Hhcc
Q 011416          465 VMLI  468 (486)
Q Consensus       465 ~~~~  468 (486)
                      ....
T Consensus       178 f~~g  181 (654)
T TIGR00926       178 FMAG  181 (654)
T ss_pred             HHHh
Confidence            5443

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=98.31  E-value=5e-06  Score=78.26  Aligned_cols=107  Identities=18%  Similarity=0.126  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHhhhhhhcC---CC------HHHHHHHHHHHHhccCcc-hhhhhhhccccCCC---chhHHHHHHHHHH
Q 011416           91 MGFLGEALVTAGAGLLSSFS---PN------YITLITLRCLVGVGLGSG-HVFLSWFLEFVPPS---NRGMWMVIFSSFW  157 (486)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~a---~~------~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~---~r~~~~~~~~~~~  157 (486)
                      |++.++.++..+|.++..++   ++      .+.++++-++.++|.|+. +...++.+|.++++   +|.+.+.++..+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            56788888888888874332   22      267889999999999999 99999999998765   4677888999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCcHHHHHHhHHHHHHHHHHhhc
Q 011416          158 TIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGF  197 (486)
Q Consensus       158 ~~G~~i~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~  197 (486)
                      ++|..++..+.+++.++.||.+.|.+.++..++.++....
T Consensus        82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~  121 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS  121 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999988877776555443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=98.29  E-value=1.9e-05  Score=74.30  Aligned_cols=151  Identities=15%  Similarity=0.116  Sum_probs=111.4

Q ss_pred             CCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhch-hHHHHHHHHHHHHHHHHHhh----hc-hhHHHHHHHHHHHHhhh
Q 011416          324 HHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGR-KLSITIMFTLSCLFLLPLVT----YQ-SNILTTGLLFGARMCVM  397 (486)
Q Consensus       324 ~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~-~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~  397 (486)
                      .+.+.+..|+......++..++.++.|+...|.+. |+.++.+.++++++.++...    .+ ..+.+.+.-++.|++. 
T Consensus        66 ~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~-  144 (488)
T KOG2325|consen   66 PTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGV-  144 (488)
T ss_pred             CCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCc-
Confidence            56777888999999999999999999999999875 78888899999988887733    22 3445555555655553 


Q ss_pred             hhhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhh-------------ccchHHHHHHHHHHHHHHH
Q 011416          398 GAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANC-------------HQMTAVVLLVVVIVTSILS  464 (486)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~-------------g~~~~~~~~~~~~~~~~~~  464 (486)
                      +.....-.++++..-.+.|.++++..+...-+|.++||.+...+....             -+..+-++.+.+.++..+.
T Consensus       145 ~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~  224 (488)
T KOG2325|consen  145 GNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVI  224 (488)
T ss_pred             ccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHH
Confidence            345677888888777788899888888877788888877654433211             1456677888888888888


Q ss_pred             HhcccccccCC
Q 011416          465 VMLIPFETKGQ  475 (486)
Q Consensus       465 ~~~~~~~~~~~  475 (486)
                      ...+.+|..+.
T Consensus       225 i~~~f~E~~~~  235 (488)
T KOG2325|consen  225 ILFFFKEVYRG  235 (488)
T ss_pred             HHhheeecccC
Confidence            77777665443

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=98.14  E-value=0.00024  Score=65.10  Aligned_cols=108  Identities=16%  Similarity=0.089  Sum_probs=62.7

Q ss_pred             hHHHHHH-HHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHh---------hhchhHHHHHHHHHHHHhhhhhh
Q 011416          331 LYIDEFI-TSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLV---------TYQSNILTTGLLFGARMCVMGAF  400 (486)
Q Consensus       331 ~~~~~~~-~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~  400 (486)
                      .-+.... +.+...+|.+...++-++- ||... +..++-.+..-++.         ...+.+.......++++..|-..
T Consensus       284 ~~~~~~l~fN~~d~vG~~~a~~~~~~~-~r~l~-i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYlt  361 (406)
T KOG1479|consen  284 ALLLVFLSFNVFDLIGSILAALLTWPD-PRKLT-IPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLT  361 (406)
T ss_pred             HHHHHHHHhHHHHHhhhhhhhcccCCC-Cceeh-HHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHh
Confidence            3344444 6777777766655554333 23222 22222211111111         24566777888888999999999


Q ss_pred             hhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHH
Q 011416          401 TVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVAL  441 (486)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l  441 (486)
                      +..+.+..+..|++++-.+-.+....-..|-+.|.. .+++
T Consensus       362 sl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~-~s~l  401 (406)
T KOG1479|consen  362 SLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSL-LSWV  401 (406)
T ss_pred             hheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhH-HHHH
Confidence            999999999998887766544444444444444443 4444

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=97.94  E-value=0.0021  Score=61.44  Aligned_cols=152  Identities=8%  Similarity=-0.039  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHH-HHHHHHHHHHhchhH
Q 011416          282 ARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPG-LLLAAILVDTAGRKL  360 (486)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~g~l~dr~g~~~  360 (486)
                      .+.++.....+++..+.|+..=..-..+.          ....+.+.+......+...+...+. .++-+++++|++|++
T Consensus         6 ~~k~~~~~l~fF~il~~Y~iLR~lKD~lv----------v~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~   75 (472)
T TIGR00769         6 LKKFLPLFLMFFCILFNYTILRDTKDTLV----------VTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEA   75 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhee----------ecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence            35566666666666666665544433332          0111223345555555555554444 788899999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhh-----c--------------------------hhHHHHHHHHHHHHhhhhhhh-hHhhhcc
Q 011416          361 SITIMFTLSCLFLLPLVTY-----Q--------------------------SNILTTGLLFGARMCVMGAFT-VSLIYAA  408 (486)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~-----~--------------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  408 (486)
                      +..+........++++.+.     +                          +.|.................+ ..|.+++
T Consensus        76 lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fan  155 (472)
T TIGR00769        76 LFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFAN  155 (472)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8866555554444443321     0                          122223333344444444555 8899999


Q ss_pred             ccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 011416          409 EIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVA  443 (486)
Q Consensus       409 ~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~  443 (486)
                      |.+..++..+.+++....+++|..+++.+..++.+
T Consensus       156 di~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~  190 (472)
T TIGR00769       156 QITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK  190 (472)
T ss_pred             hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999888764

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.90  E-value=0.00045  Score=66.19  Aligned_cols=148  Identities=18%  Similarity=0.106  Sum_probs=104.6

Q ss_pred             cCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHh-----chhHHHHHHHHHHHHHHHHHhhh----chhHHHHHHHHHHH
Q 011416          323 SHHPQDANLYIDEFITSLAEIPGLLLAAILVDTA-----GRKLSITIMFTLSCLFLLPLVTY----QSNILTTGLLFGAR  393 (486)
Q Consensus       323 ~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~-----g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~  393 (486)
                      +++.++.+.........+.- ...++.|.++|-+     +||..+.++.++..++.+.+...    .+.....+++++..
T Consensus        19 ~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~   97 (433)
T PF03092_consen   19 DLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLAS   97 (433)
T ss_pred             HcCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHH
Confidence            45788887776665555443 4467999999976     35556666666665555544442    23344455556666


Q ss_pred             HhhhhhhhhHhhhccccccc--cchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhccccc
Q 011416          394 MCVMGAFTVSLIYAAEIYPT--SVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFE  471 (486)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  471 (486)
                      ++....-.+.-+...|...+  +.+|...+.......+|+.++..+.|.+.+..++...|.+.+.+..+..+..+.+.+|
T Consensus        98 ~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e  177 (433)
T PF03092_consen   98 FGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEE  177 (433)
T ss_pred             HHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhh
Confidence            66666667777777777522  2277888888999999999999999999999999888888888877777666666655

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.85  E-value=0.0029  Score=50.49  Aligned_cols=115  Identities=12%  Similarity=0.003  Sum_probs=91.2

Q ss_pred             CCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhh
Q 011416          327 QDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIY  406 (486)
Q Consensus       327 ~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (486)
                      ++..-.....+......+..++.+.+.+++|.|+.+.++.+...+-..... .++.+..+....+.|++.+..+...-.+
T Consensus        35 ~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~-~~~~~~l~~~s~l~G~~~a~lW~aqg~y  113 (156)
T PF05978_consen   35 SAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFF-YPNSYTLYPASALLGFGAALLWTAQGTY  113 (156)
T ss_pred             cccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHhhhhHHhhHhhhHH
Confidence            333334445566666778888899999999999999999988876555543 4556777888889999999999998889


Q ss_pred             ccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 011416          407 AAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALV  442 (486)
Q Consensus       407 ~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~  442 (486)
                      +.+...++.+++..++.-.+.+.+.++|..+.-.+.
T Consensus       114 lt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~  149 (156)
T PF05978_consen  114 LTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF  149 (156)
T ss_pred             HHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999888888888877765443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=97.81  E-value=0.00023  Score=60.75  Aligned_cols=107  Identities=15%  Similarity=0.029  Sum_probs=58.8

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHH-hchhHHHH----HHHHHHHHHHHHHhh-h-c---hhHHHHHHHHHHHHhhhhhhhhH
Q 011416          334 DEFITSLAEIPGLLLAAILVDT-AGRKLSIT----IMFTLSCLFLLPLVT-Y-Q---SNILTTGLLFGARMCVMGAFTVS  403 (486)
Q Consensus       334 ~~~~~~i~~~~~~~~~g~l~dr-~g~~~~~~----~~~~~~~~~~~~~~~-~-~---~~~~~~~~~~~~~~~~~~~~~~~  403 (486)
                      ...+.-.+.++|.+..|...+. +.||+.+.    .+.++..+..+.... . .   ......+..++.|++.-+..++.
T Consensus       146 ~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~Vi  225 (267)
T PF07672_consen  146 FQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQGVI  225 (267)
T ss_pred             HHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            3334334444555555666654 45555443    222222222222111 1 1   23445666677777777777877


Q ss_pred             hhhcccc--ccccchhhHhHHHHHHHHHHHHHHHHHHHH
Q 011416          404 LIYAAEI--YPTSVRSTGAGAANAMGRIGGMVCPLVAVA  440 (486)
Q Consensus       404 ~~~~~~~--~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~  440 (486)
                      .....|.  ..|++.|...|+.-.++++.-.+.-.+...
T Consensus       226 L~lPhEyK~~~pk~ig~~Fg~iWGfGY~~yTi~~Ii~S~  264 (267)
T PF07672_consen  226 LNLPHEYKGYNPKKIGIQFGLIWGFGYIFYTIYDIILSV  264 (267)
T ss_pred             hcChhhhcCCCcceehhHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777765  455667887787777777666665555443

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.63  E-value=0.00041  Score=63.96  Aligned_cols=174  Identities=13%  Similarity=0.014  Sum_probs=110.5

Q ss_pred             HHHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcc-hHHHHHHHHHHHHhhh
Q 011416           27 LAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGR-RMGFLGEALVTAGAGL  105 (486)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~-r~~~~~~~~~~~~~~~  105 (486)
                      +.++.+++.........+...+......-|.+....|++.....++..+++...|.+.||... |.++.+......++..
T Consensus       268 F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~  347 (480)
T KOG2563|consen  268 FIILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTL  347 (480)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            444444455544445555555554555566777889999999999999999999999999865 6666666655555532


Q ss_pred             hhhcC----CCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---c
Q 011416          106 LSSFS----PNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLD---W  177 (486)
Q Consensus       106 ~~~~a----~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~---w  177 (486)
                      .....    .+.+.++..-.+.|.+.... |...-+-.|...|..-+.-.|+.+...++=..+-..+.+.+.+..+   |
T Consensus       348 ~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~  427 (480)
T KOG2563|consen  348 MLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGN  427 (480)
T ss_pred             HHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCC
Confidence            22221    23445666667777777666 7777788887777666777787777766666666666666666555   3


Q ss_pred             HH-HHHHhHHHHHHHHHHhhccCC
Q 011416          178 RW-LLGLSSIPSFILLAFLGFQPE  200 (486)
Q Consensus       178 ~~-~f~~~~~~~~~~~~~~~~~~e  200 (486)
                      .. .-+......++..++..+++|
T Consensus       428 ~~~~~i~~~~~~~l~~~lva~~r~  451 (480)
T KOG2563|consen  428 TFPANIFLTVSALLGAILVAFFRP  451 (480)
T ss_pred             CccchhHhHHHHHHHHHHHhhhhh
Confidence            33 333333333444444444443

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.51  E-value=0.0013  Score=45.40  Aligned_cols=47  Identities=17%  Similarity=0.066  Sum_probs=41.7

Q ss_pred             ccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHH
Q 011416          322 FSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTL  368 (486)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~  368 (486)
                      ++.|.++.+++....+..+..+++.++.|.++||+++++.......+
T Consensus        28 ~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen   28 KQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence            45789999999999999999999999999999999998877665544

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=97.45  E-value=0.0072  Score=52.84  Aligned_cols=133  Identities=11%  Similarity=-0.041  Sum_probs=87.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHhccCcchhhhhhhcccc
Q 011416           62 ESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFV  141 (486)
Q Consensus        62 ~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~i~~~~  141 (486)
                      .|.+.-+-.+-..+..+.+....||+---.=..+..++.+.+..+.++++|.++-+.+-.+..++.|..-+..--++..+
T Consensus        64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~Y  143 (409)
T KOG3880|consen   64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSRY  143 (409)
T ss_pred             cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhccC
Confidence            35555556666777778888889987543334566778888999999999999999999999999888743333333444


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHhHHHHHHHHHHhhcc
Q 011416          142 PPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMP--RLDWRWLLGLSSIPSFILLAFLGFQ  198 (486)
Q Consensus       142 ~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~--~~~w~~~f~~~~~~~~~~~~~~~~~  198 (486)
                      ++.    ..+-++.+.+.+.++|..--..+.+  ..+-|...++...+-++....++++
T Consensus       144 ~~~----~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~l  198 (409)
T KOG3880|consen  144 PSI----VIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFL  198 (409)
T ss_pred             CCc----eeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhe
Confidence            332    3344555566666666655445544  3567777777666555554444444

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=97.22  E-value=0.035  Score=50.41  Aligned_cols=116  Identities=24%  Similarity=0.152  Sum_probs=85.6

Q ss_pred             chhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhch--hHHHHHHHHHHHHhhhhhhhhHhhh
Q 011416          329 ANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQS--NILTTGLLFGARMCVMGAFTVSLIY  406 (486)
Q Consensus       329 ~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  406 (486)
                      ...+.......+...++.++.|.+.||+|||+.+..+......+.+......+  .+.........+++.+...+....+
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  118 (338)
T COG0477          39 LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASAL  118 (338)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            35677788888888888899999999999997777766553444333333333  4444455555677777888899999


Q ss_pred             ccccccc-cchhhHhHHHHH-HHHHHHHHHHHHHHHHHHh
Q 011416          407 AAEIYPT-SVRSTGAGAANA-MGRIGGMVCPLVAVALVAN  444 (486)
Q Consensus       407 ~~~~~~~-~~~~~~~g~~~~-~~~~g~~~~~~i~g~l~~~  444 (486)
                      ..|..|+ +.++...+.... ...++..++|.+.+.+.+.
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (338)
T COG0477         119 LSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA  158 (338)
T ss_pred             HHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999987 568888888888 5778888888777766655

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=97.20  E-value=6.5e-05  Score=73.50  Aligned_cols=152  Identities=11%  Similarity=0.004  Sum_probs=2.4

Q ss_pred             ccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhc-------------------
Q 011416          320 LMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQ-------------------  380 (486)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-------------------  380 (486)
                      +..+++++..++|++.+..-++.++..++..++.+|..|-+++..+.++++++.+++.+.+                   
T Consensus        29 iErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~  108 (539)
T PF03137_consen   29 IERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSS  108 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccc
Confidence            4567899999999999999999999999999999998888899999999999888776410                   


Q ss_pred             -------------------------------hhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHHHHH
Q 011416          381 -------------------------------SNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRI  429 (486)
Q Consensus       381 -------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  429 (486)
                                                     ....+++..++.|++....++...+++-|.++++..+...|+..+...+
T Consensus       109 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~l  188 (539)
T PF03137_consen  109 ISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSIL  188 (539)
T ss_dssp             -------------------------------------------SSS----------------------------------
T ss_pred             cccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhc
Confidence                                           0123345556777888888899999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHHh---------------------hc-cchHHHHHHHHHHHHHHHHhccccc
Q 011416          430 GGMVCPLVAVALVAN---------------------CH-QMTAVVLLVVVIVTSILSVMLIPFE  471 (486)
Q Consensus       430 g~~~~~~i~g~l~~~---------------------~g-~~~~~~~~~~~~~~~~~~~~~~~~~  471 (486)
                      |-++|-.+++...+.                     .| |+..|++.+.+.++.++....+.|+
T Consensus       189 GPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~  252 (539)
T PF03137_consen  189 GPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKK  252 (539)
T ss_dssp             ----------------------------------------------------------------
T ss_pred             cHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence            888887777665532                     11 5666777777777777777666543

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PRK03612 spermidine synthase; Provisional

Probab=97.18  E-value=0.048  Score=53.49  Aligned_cols=139  Identities=15%  Similarity=0.048  Sum_probs=77.8

Q ss_pred             CCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHH---HHHHHHH----hhh-chhHHHHHHHHHHHHhh
Q 011416          325 HPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLS---CLFLLPL----VTY-QSNILTTGLLFGARMCV  396 (486)
Q Consensus       325 ~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~---~~~~~~~----~~~-~~~~~~~~~~~~~~~~~  396 (486)
                      |.+....+...+.+-.+..+|+.+++++.++..++... +-..+.   .++..++    .+. ..........++.++..
T Consensus        46 G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~-~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~  124 (521)
T PRK03612         46 GDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVA-VELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLI  124 (521)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56666667777777777777777777765433222221 111111   1111111    111 11122233444556677


Q ss_pred             hhhhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHH-hhccchHHHHHHHHHHHHHHHH
Q 011416          397 MGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVA-NCHQMTAVVLLVVVIVTSILSV  465 (486)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~-~~g~~~~~~~~~~~~~~~~~~~  465 (486)
                      |...|...-+..+... +..+...|-......+|+++|+++.+.+.- ..|.....++.+.+.++++++.
T Consensus       125 G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~  193 (521)
T PRK03612        125 GMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVF  193 (521)
T ss_pred             HHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            7777766665544322 234667788889999999999999887654 6776666666666555554433

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.10  E-value=0.0036  Score=62.12  Aligned_cols=153  Identities=11%  Similarity=0.022  Sum_probs=121.9

Q ss_pred             cccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhc-------------------h
Q 011416          321 MFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQ-------------------S  381 (486)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-------------------~  381 (486)
                      ..+++.+..+.|++....-++..+......+...|..|-+++.++.++++++.++..+.+                   +
T Consensus       124 ErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~  203 (735)
T KOG3626|consen  124 ERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENP  203 (735)
T ss_pred             hhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCC
Confidence            456788889999999999999999999999999999999999999999988888776410                   0


Q ss_pred             --------------------------------h-HHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHHHH
Q 011416          382 --------------------------------N-ILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGR  428 (486)
Q Consensus       382 --------------------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  428 (486)
                                                      . ..++...++.|++....++...+++-|...++......|+..++..
T Consensus       204 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~  283 (735)
T KOG3626|consen  204 SSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAI  283 (735)
T ss_pred             ccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHH
Confidence                                            1 1344556677888888889999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHhh------------------c-cchHHHHHHHHHHHHHHHHhccccccc
Q 011416          429 IGGMVCPLVAVALVANC------------------H-QMTAVVLLVVVIVTSILSVMLIPFETK  473 (486)
Q Consensus       429 ~g~~~~~~i~g~l~~~~------------------g-~~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (486)
                      +|-++|-.+++.+...+                  | |+..|++.+.+.++.++..+.+.++.+
T Consensus       284 lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp  347 (735)
T KOG3626|consen  284 LGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELP  347 (735)
T ss_pred             hhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCc
Confidence            88888888877766431                  1 566777888888888888877765443

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.03  E-value=0.011  Score=55.91  Aligned_cols=147  Identities=14%  Similarity=0.022  Sum_probs=106.1

Q ss_pred             HHHHHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhh
Q 011416           25 FVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAG  104 (486)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~  104 (486)
                      .-++...++..+-++....++.....+...-|+++..+|..-+...+....+.....++.+|+|..|.-.++........
T Consensus       258 q~vflas~alalLY~TVLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L  337 (432)
T PF06963_consen  258 QPVFLASFALALLYFTVLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCL  337 (432)
T ss_pred             CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Confidence            34556666666666766666666667777779999999999999999999999999999999999888777766444333


Q ss_pred             hhhh---cC---C----CHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011416          105 LLSS---FS---P----NYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWII  171 (486)
Q Consensus       105 ~~~~---~a---~----~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l  171 (486)
                      .++.   ++   +    +...++.+-.+.=+|.=.+ .....++.|..|+++||...|.-.+..++-.++...++-.+
T Consensus       338 ~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~  415 (432)
T PF06963_consen  338 ALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIF  415 (432)
T ss_pred             HHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3222   22   2    2233333334443443234 55667888999999999999999999998888877666544

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=96.92  E-value=0.013  Score=54.56  Aligned_cols=140  Identities=12%  Similarity=-0.003  Sum_probs=89.5

Q ss_pred             HHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHH---hhhh
Q 011416           30 AGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAG---AGLL  106 (486)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~---~~~~  106 (486)
                      +.+.++..+.....+.+.+. ...++.-..++.-+...+|.+|-.++.--...+  |+.+-+++.+-.++..+   ....
T Consensus       252 L~lVY~aEY~InqGv~~tl~-fp~~~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--rir~lwils~LQ~~nl~~~~l~s~  328 (402)
T PF02487_consen  252 LFLVYFAEYFINQGVAPTLL-FPNSFFSPRDQYRWYQLLYQLGVFISRSSLPFF--RIRRLWILSLLQVINLVFLLLQSW  328 (402)
T ss_pred             HHHHHHHHHHHHhchHHHhc-CCccCCCHHHHHHHHHHHHHHHHhhhhcceeee--ehhhHHHHHHHHHHHHHHHHHHHH
Confidence            44555555544333332221 112233345677888888888877765432222  34232332222222222   2223


Q ss_pred             hhcCCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011416          107 SSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIM  172 (486)
Q Consensus       107 ~~~a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~  172 (486)
                      .-+.+|.|..++.-+..|+..|.. ......+.|-.++++|..++|....+-++|..++.+++-.+-
T Consensus       329 ~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le  395 (402)
T PF02487_consen  329 YRFIPSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE  395 (402)
T ss_pred             HHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            345689999999999999998888 445577788889999999999999999999999998887663

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=96.92  E-value=0.0058  Score=57.57  Aligned_cols=111  Identities=12%  Similarity=-0.074  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHHHHHHhh---hc------hhHHHHHHHHHHHHhhhhhhhhHhhhcccccccc---chhhHhHHHHHHH
Q 011416          360 LSITIMFTLSCLFLLPLVT---YQ------SNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTS---VRSTGAGAANAMG  427 (486)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~---~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~  427 (486)
                      +.+.++.++..++.+++..   ..      ....+.+.+.+.+++.++.=|...++..|.++++   .+...+..+....
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            4566777777777777443   11      1246777788889999999999999999998765   4567777888999


Q ss_pred             HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhcccc
Q 011416          428 RIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPF  470 (486)
Q Consensus       428 ~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  470 (486)
                      ++|..+++.+.+++.++.+|...|.+.++..+++.+..+.-.+
T Consensus        82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~  124 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRK  124 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCc
Confidence            9999999999999999999999999988888888777666543

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=96.82  E-value=0.078  Score=49.53  Aligned_cols=145  Identities=12%  Similarity=0.068  Sum_probs=99.2

Q ss_pred             CCCCCchhHHHHHHHHh-hHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhh
Q 011416          324 HHPQDANLYIDEFITSL-AEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTV  402 (486)
Q Consensus       324 ~~~~~~~~~~~~~~~~i-~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (486)
                      ++++..+..--..+.+. ..++..+....+.|.++.|++++.+.+...+...++.+.++...+.+.-++.|.+... -..
T Consensus        35 kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~-eva  113 (412)
T PF01770_consen   35 KNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAA-EVA  113 (412)
T ss_pred             cCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHH-HHH
Confidence            45555544332222222 2233445777899999999999999998888888888888888888888888777544 566


Q ss_pred             HhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhc--cchHHHHHHHHHHHHHHHHhccc
Q 011416          403 SLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH--QMTAVVLLVVVIVTSILSVMLIP  469 (486)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~  469 (486)
                      .++++-...++++--++.+...+..-+|.+++..++-.+.+..+  +.....+..+...++.+..++++
T Consensus       114 y~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP  182 (412)
T PF01770_consen  114 YYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLP  182 (412)
T ss_pred             HHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            67777777888888888999999988888888888766665333  33333344444444445544443

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=96.67  E-value=0.29  Score=47.46  Aligned_cols=153  Identities=14%  Similarity=0.007  Sum_probs=91.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHh-hHHHHHHHHHHHHHHhc
Q 011416          279 SKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSL-AEIPGLLLAAILVDTAG  357 (486)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~g~l~dr~g  357 (486)
                      +..++.++.+.+.+++..+.+...-..-..+.          ..  ...++.+..+-....+ +.++...+-.+++++++
T Consensus        20 ~~E~~k~~~l~~m~f~i~f~y~~lR~~KD~lv----------vt--~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s   87 (491)
T PF03219_consen   20 RSELKKFLPLALMFFFILFNYTILRDLKDTLV----------VT--AQGAEVIPFLKVWGVLPVAILFTILYSKLSNRLS   87 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCeEE----------Ee--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            34456677777777766666554443333222          11  1233333333222222 33455567789999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHhh---------hch----------------------hHHHHHHHHHHHHhhhhhhh-hHhh
Q 011416          358 RKLSITIMFTLSCLFLLPLVT---------YQS----------------------NILTTGLLFGARMCVMGAFT-VSLI  405 (486)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~---------~~~----------------------~~~~~~~~~~~~~~~~~~~~-~~~~  405 (486)
                      +.++.-+........+.++++         .++                      .|...+..+..-.......+ ..|.
T Consensus        88 ~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~  167 (491)
T PF03219_consen   88 REKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWG  167 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998776554444443333322         111                      12222222222222233334 5799


Q ss_pred             hccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 011416          406 YAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVA  443 (486)
Q Consensus       406 ~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~  443 (486)
                      +++|..+.++..+.+++....+++|..+++.+..++.+
T Consensus       168 fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  168 FANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999888877

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=96.65  E-value=0.023  Score=39.66  Aligned_cols=63  Identities=16%  Similarity=-0.012  Sum_probs=56.1

Q ss_pred             ccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHH
Q 011416          322 FSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNIL  384 (486)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (486)
                      ++.+++..+.++..+...++.++|.+...++.++.++++.+..+.+...+..+.+.+.++.+.
T Consensus        20 ~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~   82 (85)
T PF06779_consen   20 ADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWL   82 (85)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence            567899999999999999999999999999999988899999999999999888887666543

Note that many members are hypothetical proteins.

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=96.59  E-value=0.5  Score=42.26  Aligned_cols=70  Identities=14%  Similarity=0.173  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHhccCcc-hhhhhhhcc
Q 011416           69 VFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLE  139 (486)
Q Consensus        69 ~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~  139 (486)
                      ..+....++++.+.+..++|-|+++.++......... .-+-+.|..++-.-...|++.+.. ..--+|+++
T Consensus        67 ~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA-~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~  137 (390)
T KOG3097|consen   67 LYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIA-ANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTP  137 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-hhcchhHHhhccHHHhhccccccccccCcceecH
Confidence            3455566667777999999999999998877665433 223367888999999999998876 333345443

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=96.56  E-value=0.63  Score=44.24  Aligned_cols=152  Identities=14%  Similarity=0.047  Sum_probs=96.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHh-hHHHHHHHHHHHHHHhchh
Q 011416          281 LARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSL-AEIPGLLLAAILVDTAGRK  359 (486)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~g~l~dr~g~~  359 (486)
                      -++.++...+.+++..+.+...-..-..+.-            -...++.+...-...-+ ++++..++-.++.+++.+.
T Consensus        25 E~~kflpl~Ll~f~I~~ny~~lR~lKDslvv------------~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~   92 (509)
T COG3202          25 ELKKFLPLALLFFCILFNYNLLRSLKDSLVV------------TRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTRE   92 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhheEe------------ecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHH
Confidence            4566677777777777766655544443330            12344444444444444 4566777888999999998


Q ss_pred             HHHHHHHHHHHHHHHHHhh--h-------ch-----------------------hHHHHHHHHHHHHhhhhhhh-hHhhh
Q 011416          360 LSITIMFTLSCLFLLPLVT--Y-------QS-----------------------NILTTGLLFGARMCVMGAFT-VSLIY  406 (486)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~--~-------~~-----------------------~~~~~~~~~~~~~~~~~~~~-~~~~~  406 (486)
                      ++..+.......+++++++  .       ++                       .|.......+.-.......+ ..+..
T Consensus        93 ~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~f  172 (509)
T COG3202          93 KVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQF  172 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8776555444444444332  0       11                       12333333333333333333 67889


Q ss_pred             ccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 011416          407 AAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVAN  444 (486)
Q Consensus       407 ~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~  444 (486)
                      ++|....++..+.+++.+...+++..++..+..++.++
T Consensus       173 aNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~  210 (509)
T COG3202         173 ANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH  210 (509)
T ss_pred             HHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999998888763

>PRK03612 spermidine synthase; Provisional

Probab=96.47  E-value=0.084  Score=51.83  Aligned_cols=138  Identities=15%  Similarity=0.132  Sum_probs=80.9

Q ss_pred             hhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHH---HHHhhhhh----hcCCCH-HHHHHHHHHH
Q 011416           52 KSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALV---TAGAGLLS----SFSPNY-ITLITLRCLV  123 (486)
Q Consensus        52 ~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~---~~~~~~~~----~~a~~~-~~l~~~r~l~  123 (486)
                      ..-+|-+..+.+.+.+++.+|..+|+.+++++.++--++.. .+-+.+   .+++..+.    .+...+ ..++...++.
T Consensus        42 ~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~  120 (521)
T PRK03612         42 SYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLI  120 (521)
T ss_pred             HHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34468888899999999999999999999988744333322 111111   11111111    111111 1123334556


Q ss_pred             HhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCcHHHHHHhHHHHHHH
Q 011416          124 GVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIM-PRLDWRWLLGLSSIPSFIL  191 (486)
Q Consensus       124 G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~-~~~~w~~~f~~~~~~~~~~  191 (486)
                      |+..|.. |....+..+. ..++-++..|-......+|.++|.++.+++. ..+|-....++.+.+.++.
T Consensus       121 ~~l~G~~~Pl~~~~~~~~-~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~  189 (521)
T PRK03612        121 GLLIGMEIPLLMRILQRI-RDQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLA  189 (521)
T ss_pred             HHHHHHHHHHHHHHHHhc-cccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            6766666 5544444332 2234567788888999999999998877654 4677555554555544443

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=96.14  E-value=0.0017  Score=59.25  Aligned_cols=105  Identities=14%  Similarity=0.134  Sum_probs=3.7

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHHHHHHh-------------hhchhHHHHHHHHHHHHhhhh
Q 011416          333 IDEFITSLAEIPGLLLAAILVDTA-GRKLSITIMFTLSCLFLLPLV-------------TYQSNILTTGLLFGARMCVMG  398 (486)
Q Consensus       333 ~~~~~~~i~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~  398 (486)
                      .....++++..+|+.+.++..-+. ++|++. +..+.-.+..-++.             ..++.+..++..+++++..|.
T Consensus       186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~-~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGy  264 (309)
T PF01733_consen  186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLW-ILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGY  264 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhcchhcceeEecccccccHH-HHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccch
Confidence            456678999999999888753221 233333 22222221111111             123445667778888999999


Q ss_pred             hhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHH
Q 011416          399 AFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVA  438 (486)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~  438 (486)
                      ..+..+.+..+..++++|..+-.+....-.+|-.+|..+.
T Consensus       265 l~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls  304 (309)
T PF01733_consen  265 LSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS  304 (309)
T ss_dssp             --HHHH----------------------------------
T ss_pred             hhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988888877776666667776666553

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.02  E-value=0.43  Score=45.51  Aligned_cols=135  Identities=16%  Similarity=0.226  Sum_probs=88.9

Q ss_pred             HHHHHhhHhhhhchhchh---hhhcCCCcchh-HHHHHHHHHHHHHHHHHHhhhhh---hhcchHHHHHHHHHHHHhhhh
Q 011416           34 WVAEAMEIMILSFVGPTV---KSEWNLSSTEE-SLITTSVFAGLVVGAYAWGLVAD---NYGRRMGFLGEALVTAGAGLL  106 (486)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~---~~~~~~s~~~~-g~~~s~~~~~~~i~~~~~g~l~d---r~G~r~~~~~~~~~~~~~~~~  106 (486)
                      .+..+..+..+....|.-   ....+.+.... +...-...++..+++.+.+.+.+   |+|+++.+.++..+..++.++
T Consensus       249 f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~l  328 (461)
T KOG3098|consen  249 FFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLL  328 (461)
T ss_pred             HHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHH
Confidence            344444444444444432   22333333332 33333445566666677777775   578999999998888888776


Q ss_pred             hhcC------------------CCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHH
Q 011416          107 SSFS------------------PNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIG  167 (486)
Q Consensus       107 ~~~a------------------~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l  167 (486)
                      .-..                  +++...++.-++.|++-+.. ...+..+.+.+ +++|..+.++...-.+++..++...
T Consensus       329 i~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~  407 (461)
T KOG3098|consen  329 IHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFF  407 (461)
T ss_pred             HhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhh
Confidence            6443                  14667777889999999888 66777788877 7888889988888888877776554


Q ss_pred             HH
Q 011416          168 AW  169 (486)
Q Consensus       168 ~~  169 (486)
                      ..
T Consensus       408 ~~  409 (461)
T KOG3098|consen  408 SP  409 (461)
T ss_pred             hh
Confidence            44

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=95.96  E-value=0.0095  Score=55.34  Aligned_cols=118  Identities=11%  Similarity=-0.057  Sum_probs=81.4

Q ss_pred             ccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHH----hchhHHH-HHHHHHHHHHHHHHhhhchh--------------
Q 011416          322 FSHHPQDANLYIDEFITSLAEIPGLLLAAILVDT----AGRKLSI-TIMFTLSCLFLLPLVTYQSN--------------  382 (486)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr----~g~~~~~-~~~~~~~~~~~~~~~~~~~~--------------  382 (486)
                      ...|.+....+.......+.+++.+++.|..+||    +|||+.. ..+.....++++++.+....              
T Consensus        60 ~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~  139 (498)
T KOG0637|consen   60 QSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKP  139 (498)
T ss_pred             HHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccch
Confidence            4567777777788888888899999999999996    6776655 45555566666665542110              


Q ss_pred             ---HHHHHHHHHHHHhhhhhhhhHhhhccccccccchhh-HhHHHHHHHHHHHHHHHHHHH
Q 011416          383 ---ILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRST-GAGAANAMGRIGGMVCPLVAV  439 (486)
Q Consensus       383 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~g~~~~~~i~g  439 (486)
                         ...++...+.=++........-++..|...++.+.+ +++....+..+|+.+|=.+.+
T Consensus       140 rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~  200 (498)
T KOG0637|consen  140 RAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS  200 (498)
T ss_pred             HHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence               112222223334555677788889999887777777 899888888888887766554

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=95.70  E-value=0.69  Score=45.96  Aligned_cols=145  Identities=19%  Similarity=0.095  Sum_probs=102.3

Q ss_pred             CCCCCchhHHHHHHHHhhHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHhhh-------c---------------
Q 011416          324 HHPQDANLYIDEFITSLAEIPGLLLAAILVDT-AGRKLSITIMFTLSCLFLLPLVTY-------Q---------------  380 (486)
Q Consensus       324 ~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~-------~---------------  380 (486)
                      .+.+...+.-.............+++++++|. +||-+.+.++.++..++..++...       +               
T Consensus        68 ~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~  147 (571)
T KOG1237|consen   68 LHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESP  147 (571)
T ss_pred             hccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCc
Confidence            34555666666666666677777899999997 588888888888877776554431       0               


Q ss_pred             h---hHHHHHHHHHHHHhhhhhhhhHhhhcccccc---c-cc--hhhHhHHHHHHHHHHHHHHHHHHHHHHHhhccchHH
Q 011416          381 S---NILTTGLLFGARMCVMGAFTVSLIYAAEIYP---T-SV--RSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAV  451 (486)
Q Consensus       381 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~--~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~  451 (486)
                      +   ...+...+.+..++.++.-|...++-.|-++   + +.  +...+.......++|..++-.+..++.++.+|...|
T Consensus       148 s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf  227 (571)
T KOG1237|consen  148 SKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGF  227 (571)
T ss_pred             chHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeec
Confidence            0   0134444555666778888888888888887   2 22  235566677778899999999888888889998888


Q ss_pred             HHHHHHHHHHHHHHhcc
Q 011416          452 VLLVVVIVTSILSVMLI  468 (486)
Q Consensus       452 ~~~~~~~~~~~~~~~~~  468 (486)
                      .+..+...++.++.+..
T Consensus       228 ~i~~~~~~lai~iF~~g  244 (571)
T KOG1237|consen  228 GIPTVLNALAILIFLPG  244 (571)
T ss_pred             cHHHHHHHHHHHHHHcC
Confidence            88877777766655443

>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]

Probab=95.52  E-value=0.63  Score=42.46  Aligned_cols=164  Identities=9%  Similarity=-0.010  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHHhhHhhhhchhchhhhhcCCCc-chhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHH----
Q 011416           27 LAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSS-TEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTA----  101 (486)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~----  101 (486)
                      .+.+.+++++.....-++.+.......+++-+. ...+.-...-.....+..++.|...|+..|+|++...+.+-=    
T Consensus        29 ~i~Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~  108 (503)
T KOG2601|consen   29 VIFLYLGYFLTTWGDRMWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVI  108 (503)
T ss_pred             eehhhHHHHHhHhhHhHHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHH
Confidence            345567778877777777777777777776543 333333334445567778889999999999999887655432    


Q ss_pred             --HhhhhhhcC------CCHHHHHHHHHHHHhccCcc---hhhhhhh--cccc----CCCchhHHH---HHHHHHHHHHH
Q 011416          102 --GAGLLSSFS------PNYITLITLRCLVGVGLGSG---HVFLSWF--LEFV----PPSNRGMWM---VIFSSFWTIGS  161 (486)
Q Consensus       102 --~~~~~~~~a------~~~~~l~~~r~l~G~~~~~~---~~~~~~i--~~~~----~~~~r~~~~---~~~~~~~~~G~  161 (486)
                        .+.++..+.      .++..+..+-++.-.-.+..   ..+.+.+  .||.    ..+.+....   +.....-..-.
T Consensus       109 vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~~i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~tn  188 (503)
T KOG2601|consen  109 VAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAGTILIERDWVVVMSEGESPSVLTNMNATIRGIDQSTN  188 (503)
T ss_pred             HHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhheEEecccEEEEecCCCCHHHHhhcchhhhhhhhhhh
Confidence              223333333      24555554444433222221   1111222  1443    344455444   55555566677


Q ss_pred             HHHHHHHHHHhcCCCcHHHHHHhHHHHHH
Q 011416          162 VSEAIGAWIIMPRLDWRWLLGLSSIPSFI  190 (486)
Q Consensus       162 ~i~~~l~~~l~~~~~w~~~f~~~~~~~~~  190 (486)
                      .+.|.+.+.+....+-|..-...++-+++
T Consensus       189 ~Lapv~tg~Iitfvsl~~~~g~f~~w~~v  217 (503)
T KOG2601|consen  189 LLAPVITGLIITFVSLRASAGTFAAWALV  217 (503)
T ss_pred             chhhhhhcccceeechhhhhhhhHHHHHH
Confidence            88999999988888877755555554444

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=94.70  E-value=0.66  Score=44.55  Aligned_cols=108  Identities=15%  Similarity=0.031  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhcch-HHHHHHHHHHH---Hhhhhhh---------cCCCHHHHHHHHHHHHhccCc
Q 011416           63 SLITTSVFAGLVVGAYAWGLVADNYGRR-MGFLGEALVTA---GAGLLSS---------FSPNYITLITLRCLVGVGLGS  129 (486)
Q Consensus        63 g~~~s~~~~~~~i~~~~~g~l~dr~G~r-~~~~~~~~~~~---~~~~~~~---------~a~~~~~l~~~r~l~G~~~~~  129 (486)
                      -.+...|.++-.+|..+..+.. .-++| +.+.+..+.-.   --.++|.         +-+|-+..++..++.|+..|-
T Consensus       310 ~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy  388 (437)
T TIGR00939       310 IICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY  388 (437)
T ss_pred             HHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence            4556777788888777554331 11222 12322222222   1222222         224566677789999999998


Q ss_pred             c-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011416          130 G-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWII  171 (486)
Q Consensus       130 ~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l  171 (486)
                      . .....+..+..+++||..+..+...+..+|..+|..++-.+
T Consensus       389 ~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~  431 (437)
T TIGR00939       389 LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF  431 (437)
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8 66667777888999999999999999999999988876554

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=93.49  E-value=0.29  Score=42.35  Aligned_cols=154  Identities=11%  Similarity=-0.043  Sum_probs=85.5

Q ss_pred             cccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhh
Q 011416          321 MFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAF  400 (486)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (486)
                      ...+++...+++.++.......++...+.|-++||-|||+.-+.-.+...++++.= ..+..-.+.+.-.+.|+.....+
T Consensus        64 YstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCiTK-hSpqYkVLmVGR~LGGiaTsLLF  142 (454)
T KOG4332|consen   64 YSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCITK-HSPQYKVLMVGRVLGGIATSLLF  142 (454)
T ss_pred             ehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHHhh-cCCceEEEeehhhhhhHHHHHHH
Confidence            34567888888888877777777788899999999999986544333333333221 12233334444455556555555


Q ss_pred             hhHhhh-ccccc-----cccchhhHhHHHHHHH-HHHHHHHHHHHHHHHHhhc--cchHHHHHHHHHHHHHHHHhccccc
Q 011416          401 TVSLIY-AAEIY-----PTSVRSTGAGAANAMG-RIGGMVCPLVAVALVANCH--QMTAVVLLVVVIVTSILSVMLIPFE  471 (486)
Q Consensus       401 ~~~~~~-~~~~~-----~~~~~~~~~g~~~~~~-~~g~~~~~~i~g~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~  471 (486)
                      +..-++ +.|..     |.+-.....+=...++ .+-.+++......+.|..+  .-.+|-..+.+..++..+.+--..|
T Consensus       143 SaFEsWliaEHnekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAvil~~W~E  222 (454)
T KOG4332|consen  143 SAFESWLIAEHNEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVILSSWSE  222 (454)
T ss_pred             HHHHHHHHHHhhhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHhhhhh
Confidence            554433 44443     3333333333333232 3556666666666677654  4555655555555555444433334


Q ss_pred             ccCC
Q 011416          472 TKGQ  475 (486)
Q Consensus       472 ~~~~  475 (486)
                      .-++
T Consensus       223 Nygd  226 (454)
T KOG4332|consen  223 NYGD  226 (454)
T ss_pred             ccCC
Confidence            4343

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=92.11  E-value=2.2  Score=39.35  Aligned_cols=142  Identities=18%  Similarity=0.045  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHH-----Hhc
Q 011416          283 RTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVD-----TAG  357 (486)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~d-----r~g  357 (486)
                      +.++.+.+++..+.+..-... -.|.+.           +..+.|-.+.+.......=  ..-.+++..++|     |+|
T Consensus        31 ~~illLl~LYllQGiP~GL~~-~iP~lL-----------~ak~vSyt~~a~fS~ay~P--~sLKllWaPiVDs~y~k~~G   96 (510)
T KOG3574|consen   31 SSILLLLFLYLLQGIPLGLIG-AIPLLL-----------QAKGVSYTSQAIFSFAYWP--FSLKLLWAPIVDSVYSKRFG   96 (510)
T ss_pred             hhHHHHHHHHHHcCCchhHhh-hhHHHh-----------cCCCcchhhhhhhhhhhhH--HHHHHHHHhhhHHHHHHhhc
Confidence            455555666665555443333 455444           2334555544443322211  122356777777     899


Q ss_pred             hhHHHH-HHHHHHHHHHHHHhhhc-----------hhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHH
Q 011416          358 RKLSIT-IMFTLSCLFLLPLVTYQ-----------SNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANA  425 (486)
Q Consensus       358 ~~~~~~-~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  425 (486)
                      ||+..+ -+..+.+..+..+....           +.......+++.-+....--...-.+......+++.|-++.....
T Consensus        97 rrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~V  176 (510)
T KOG3574|consen   97 RRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSV  176 (510)
T ss_pred             cccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHH
Confidence            887543 34444444444444311           111111122222232222223444555556666666665554444


Q ss_pred             HHHHHHHHHHHHH
Q 011416          426 MGRIGGMVCPLVA  438 (486)
Q Consensus       426 ~~~~g~~~~~~i~  438 (486)
                      ..+.|.+++..+.
T Consensus       177 g~~~GyfL~~~if  189 (510)
T KOG3574|consen  177 GQTAGYFLGNVVF  189 (510)
T ss_pred             HHhhhHHhhccee
Confidence            4556666655443

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=88.40  E-value=11  Score=35.31  Aligned_cols=37  Identities=8%  Similarity=-0.050  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhH
Q 011416          384 LTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAG  421 (486)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  421 (486)
                      .......+.+.+.+......+...++ +|+++....++
T Consensus       119 vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~ytqavm~  155 (406)
T KOG1479|consen  119 VTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYTQAVMS  155 (406)
T ss_pred             HHHHHHHHHhhhhhhhccchhhhhhc-CCHHHHHHHHh
Confidence            33444445555555555555555544 56665544433

>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=87.11  E-value=0.25  Score=42.38  Aligned_cols=64  Identities=16%  Similarity=0.131  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhh---------hhhhcchHH
Q 011416           29 YAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLV---------ADNYGRRMG   92 (486)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l---------~dr~G~r~~   92 (486)
                      ....+.+.+-....++-..+-.+.++.|+++.....+.-+..+.-++..++.|..         .||+|||+.
T Consensus        21 ~yGvGHmlNDitAScWFTYlllfltqiglsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G~~~~   93 (412)
T KOG4830|consen   21 AYGVGHMLNDITASCWFTYLLLFLTQIGLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIGRRMS   93 (412)
T ss_pred             eechhHHHhhHHHHHHHHHHHHHHHHhcCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhhhcceee
Confidence            3445666766666666666666778889999888888888899999998888754         469999874

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=84.49  E-value=29  Score=31.98  Aligned_cols=75  Identities=13%  Similarity=0.110  Sum_probs=37.3

Q ss_pred             hhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHH
Q 011416          275 MLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVD  354 (486)
Q Consensus       275 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~d  354 (486)
                      ++.+.+..+..+.++.+|+.....+.....+.+                    .+...+..+..++..+.-..+.+  .|
T Consensus       152 ~~t~~~~ak~sl~fc~lWF~anl~~naALa~Ts--------------------VAS~TilSStSs~FtL~la~if~--~e  209 (416)
T KOG2765|consen  152 KLTATQTAKLSLFFCPLWFLANLTSNAALAFTS--------------------VASTTILSSTSSFFTLFLAAIFP--VE  209 (416)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--------------------hhhhhhhhhcchHHHHHHHHHcC--cc
Confidence            344444555556666677665555544333322                    11122233333333333333444  88


Q ss_pred             HhchhHHHHHHHHHHHH
Q 011416          355 TAGRKLSITIMFTLSCL  371 (486)
Q Consensus       355 r~g~~~~~~~~~~~~~~  371 (486)
                      |+...+++.+..-+.++
T Consensus       210 ~ft~sKllav~~si~GV  226 (416)
T KOG2765|consen  210 RFTLSKLLAVFVSIAGV  226 (416)
T ss_pred             hhhHHHHHHHHHhhccE
Confidence            99888887654444433

>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]

Probab=84.24  E-value=29  Score=32.28  Aligned_cols=134  Identities=10%  Similarity=0.038  Sum_probs=67.3

Q ss_pred             CCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHH-------HHHHHHHhhhc-----hhHHHHHHHHHHHH
Q 011416          327 QDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLS-------CLFLLPLVTYQ-----SNILTTGLLFGARM  394 (486)
Q Consensus       327 ~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~-------~~~~~~~~~~~-----~~~~~~~~~~~~~~  394 (486)
                      +-...+....+-+....+...+.|...|+..|++++.....+.       +...+.+...+     +......++.+...
T Consensus        61 sl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~  140 (503)
T KOG2601|consen   61 SLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIVAGGLVITLLVHKDLKSATSPVFTVCLVLANL  140 (503)
T ss_pred             eehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHHHHHHHHhhheeecchhcccccHHHHHHHHHHH
Confidence            3344455555556666777778888899999988776544332       22222222221     22222222222111


Q ss_pred             -h-hhhhhhhHhhhcc---------ccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Q 011416          395 -C-VMGAFTVSLIYAA---------EIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVT  460 (486)
Q Consensus       395 -~-~~~~~~~~~~~~~---------~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~  460 (486)
                       + .+-.......+..         |-=++.......+.....-.....+.|.+.|.+.+..+.......+++..++
T Consensus       141 i~aI~~Las~A~~i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~tn~Lapv~tg~Iitfvsl~~~~g~f~~w~~v  217 (503)
T KOG2601|consen  141 IAAIAVLASLAGTILIERDWVVVMSEGESPSVLTNMNATIRGIDQSTNLLAPVITGLIITFVSLRASAGTFAAWALV  217 (503)
T ss_pred             HHHHHHHHHhhheEEecccEEEEecCCCCHHHHhhcchhhhhhhhhhhchhhhhhcccceeechhhhhhhhHHHHHH
Confidence             1 1111111111111         2112222333345555566678889999999988876655544455554444

>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=81.20  E-value=8  Score=28.09  Aligned_cols=39  Identities=10%  Similarity=0.011  Sum_probs=30.7

Q ss_pred             ccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhccchHH
Q 011416          413 TSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAV  451 (486)
Q Consensus       413 ~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~  451 (486)
                      ++.++.+.++-...-.+++++.....||+.|++-...++
T Consensus        37 ~s~k~~~~a~klssefIsGilVGa~iG~llD~~agTsPw   75 (116)
T COG5336          37 ESIKGYAQAFKLSSEFISGILVGAGIGWLLDKFAGTSPW   75 (116)
T ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence            455788888888888899999999999999987544443

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=80.61  E-value=4.9  Score=35.95  Aligned_cols=142  Identities=16%  Similarity=0.043  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHHhhHhhhhchh--chhhhhcCCCc-chhHHHHHHHHHHHHHHHHHHhhhhhhhcchHH---HHHHHHHH
Q 011416           27 LAYAGLGWVAEAMEIMILSFVG--PTVKSEWNLSS-TEESLITTSVFAGLVVGAYAWGLVADNYGRRMG---FLGEALVT  100 (486)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~-~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~---~~~~~~~~  100 (486)
                      ++-++..++..++-...+...+  |- .+.+.++. .|.-|....|.+|-.++.--.-..--+  .-+.   +-.-.+++
T Consensus       253 MvPL~~VY~~EY~INQGl~ell~F~c-~~g~sls~~sqYRwyqvlYQlGVFiSRSS~~~~~~p--~l~~LailQ~vNl~f  329 (409)
T KOG3880|consen  253 MVPLALVYFAEYFINQGLAELLLFPC-SHGFSLSKDSQYRWYQVLYQLGVFISRSSINLFTMP--YLWLLAILQFVNLLF  329 (409)
T ss_pred             HHHHHHHHHHHHHHhhhhHhhEEecc-ccCCccchhhcchhhheeeeeeEEEEeccceEEech--HHHHHHHHHHHHHHH
Confidence            3444555666555443333221  21 34444443 357788888887655443221111111  1111   22233445


Q ss_pred             HHhhhhhhcCCCHHHHHHHHHHHHhccCcchh-hhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011416          101 AGAGLLSSFSPNYITLITLRCLVGVGLGSGHV-FLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWII  171 (486)
Q Consensus       101 ~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l  171 (486)
                      .+......+.++++..++.-+.-|+-.|..++ ..--+.+-.+|++|-.+++....+-++|..++..++-.+
T Consensus       330 f~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl  401 (409)
T KOG3880|consen  330 FLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL  401 (409)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence            55566778899999999999999998777744 344566667889999999999999999999988877665

>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter

Probab=80.16  E-value=29  Score=34.43  Aligned_cols=27  Identities=4%  Similarity=-0.288  Sum_probs=14.0

Q ss_pred             HhhhchhhHHHHHHHHHHHHHHHHHHH
Q 011416          274 LMLFSSKLARTTILLWLLLFGNSFAYY  300 (486)
Q Consensus       274 ~~l~~~~~~~~~~~~~~~~~~~~~~~~  300 (486)
                      .|++|++....++..++....+.+...
T Consensus       252 gDVFR~P~~~~lls~lvG~G~Qll~~~  278 (521)
T PF02990_consen  252 GDVFRPPKHPMLLSALVGTGIQLLFMA  278 (521)
T ss_pred             HHHhcCcCCchHHHhHhcchhhhhHHH
Confidence            466777665555554444444433333

Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	486
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	2e-14

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 74.3 bits (183), Expect = 2e-14
 Identities = 69/481 (14%), Positives = 136/481 (28%), Gaps = 83/481 (17%)

Query: 19  FGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAY 78
           + + +  +      G+ A  +     +   P +  +   S  +     + +        +
Sbjct: 22  YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKF 80

Query: 79  AWGLVADNYGRR----MGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSGH--- 131
             G V+D    R     G +  A V    G +   + +   +  L  L G   G G    
Sbjct: 81  IMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPC 140

Query: 132 --VFLSWFLEFVPPSNRGMWMVIFSSFWTIGS-VSEAIGAWIIMPRLDWRWLLGLSSIPS 188
               + W+        RG  + +++    +G  +   +    +    DW   L + +  +
Sbjct: 141 GRTMVHWW----SQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCA 196

Query: 189 FILLAFLGFQ----PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTG 244
            ++  F        P+S           E              +    K +  +  LP  
Sbjct: 197 ILVALFAFAMMRDTPQSCGL----PPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLP-- 250

Query: 245 ERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVL 304
                           NK         + +      L R  IL W   +           
Sbjct: 251 ----------------NKLL-----WYIAIANVFVYLLRYGILDWSPTY----------- 278

Query: 305 LISELSSLDTRCRSPLMFSHH--PQDANLYIDEFITSLAEIPGLLLAAILVD---TAGRK 359
                          L    H     ++     F+   A IPG LL   + D      R 
Sbjct: 279 ---------------LKEVKHFALDKSSWAY--FLYEYAGIPGTLLCGWMSDKVFRGNRG 321

Query: 360 LSITIMFTLS--CLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRS 417
            +     TL      +  +    +  +    +      + G   +  ++A E+ P     
Sbjct: 322 ATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAG 381

Query: 418 TGAGAANAMGRIGGMVCPLVAVALVANCH--QMTAVVLLVVVIVTSILSVMLIPFETKGQ 475
           T AG     G +GG V     V    +        +V++   I+  IL ++++  E +  
Sbjct: 382 TAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRH 441

Query: 476 E 476
           E
Sbjct: 442 E 442

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	486
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	100.0
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	100.0
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	100.0
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	100.0
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	100.0
2cfq_A	417	Lactose permease; transport, transport mechanism,	100.0
2xut_A	524	Proton/peptide symporter family protein; transport	99.97
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.7
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.64
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.59
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.55
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.51
2xut_A	524	Proton/peptide symporter family protein; transport	99.5
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.29

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=100.00  E-value=6.9e-44  Score=348.30  Aligned_cols=424  Identities=19%  Similarity=0.221  Sum_probs=318.4

Q ss_pred             chHHHHHHHHHHHHHHHHhhHhhhhchhchhhhhcCC--------CcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHH
Q 011416           21 KYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNL--------SSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMG   92 (486)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~   92 (486)
                      ++.+.+.++.+++.++.++|...++..+|.+.++++.        +..+.|++.+++.+|..++++++|+++||+|||++
T Consensus         8 ~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~   87 (491)
T 4gc0_A            8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS   87 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            4566666777788899999999999999999888743        34567999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhh------------------cCCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHH
Q 011416           93 FLGEALVTAGAGLLSS------------------FSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIF  153 (486)
Q Consensus        93 ~~~~~~~~~~~~~~~~------------------~a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~  153 (486)
                      +.++.+++.+++++++                  +++|+++++++|+++|++.|.. +....++.|+.|+++|++..++.
T Consensus        88 l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~  167 (491)
T 4gc0_A           88 LKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFN  167 (491)
T ss_dssp             HHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhh
Confidence            9999999999999888                  4789999999999999999998 78889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcC--------CCcHHHHHHhHHHHHHHHHHhhccCCCchhhhhcCChHHHHHHHHHHHHhc
Q 011416          154 SSFWTIGSVSEAIGAWIIMPR--------LDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVN  225 (486)
Q Consensus       154 ~~~~~~G~~i~~~l~~~l~~~--------~~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  225 (486)
                      +.+..+|.++++.++..+...        .+||..+.+..++.++..+..+++||+|+|+..+++.+++++.+++....+
T Consensus       168 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~  247 (491)
T 4gc0_A          168 QFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNT  247 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCc
Confidence            999999999999988876542        458888888888888888889999999999999999999888877665432


Q ss_pred             CCCCCCchhhhccccCCCCCCCCccchhhcccCCCCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011416          226 KTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLL  305 (486)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (486)
                      ....+..+..+.                          .++.+........++.+  +.........+......+....+
T Consensus       248 ~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  299 (491)
T 4gc0_A          248 LATQAVQEIKHS--------------------------LDHGRKTGGRLLMFGVG--VIVIGVMLSIFQQFVGINVVLYY  299 (491)
T ss_dssp             HHHHHHHHHHHH--------------------------HHHHHHHTTHHHHSCCT--HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             hhHHHHHHHHHH--------------------------HHhhhhhhhHHHHhccc--HHHHHHHHHHHHHHhhhhHHHhc
Confidence            211000000000                          00000000111111111  12222222233333333444444


Q ss_pred             HhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhh----hch
Q 011416          306 ISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT----YQS  381 (486)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~----~~~  381 (486)
                      .+.+.           +..+.+...........++..+++.++++++.||+|||+.+..+...++++++.+..    ..+
T Consensus       300 ~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~  368 (491)
T 4gc0_A          300 APEVF-----------KTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAP  368 (491)
T ss_dssp             HHHHH-----------HHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             chHHH-----------HhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccc
Confidence            44433           223456666677777888999999999999999999999999888888777766543    112


Q ss_pred             hHH-HHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHH------hhccchHHHHH
Q 011416          382 NIL-TTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVA------NCHQMTAVVLL  454 (486)
Q Consensus       382 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~------~~g~~~~~~~~  454 (486)
                      .+. .....+....+..+..++.+.+.+|.+|++.|+++.|+.+.++++++++++.+.+.+.+      ..+....++++
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~  448 (491)
T 4gc0_A          369 GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIY  448 (491)
T ss_dssp             HHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence            222 22222223333445567888999999999999999999999999999999988776543      34566778899


Q ss_pred             HHHHHHHHHHHhcccccccCCCccccccc
Q 011416          455 VVVIVTSILSVMLIPFETKGQELSDTVDF  483 (486)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  483 (486)
                      +++++++.++.+++.||||++++||.++.
T Consensus       449 ~~~~~~~~i~~~~~~PETkg~tLeei~~~  477 (491)
T 4gc0_A          449 GCMGVLAALFMWKFVPETKGKTLEELEAL  477 (491)
T ss_dssp             HHHHHHHHHHHHHHCCCCTTCCHHHHGGG
T ss_pred             HHHHHHHHHHHHheecCCCCCCHHHHHHH
Confidence            99999999999999999999999887653

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=100.00  E-value=9e-43  Score=336.74  Aligned_cols=399  Identities=12%  Similarity=0.132  Sum_probs=315.5

Q ss_pred             CchHHHHHHHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHH
Q 011416           20 GKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALV   99 (486)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~   99 (486)
                      ++.++..+..+++..+...++...+++..|.+.+++ .+..+.|++.+++.++..++++++|+++||+|||+++.++.++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~  101 (451)
T 1pw4_A           23 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL  101 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHH
Confidence            456677888888899999999999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhc----CCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 011416          100 TAGAGLLSSF----SPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPR  174 (486)
Q Consensus       100 ~~~~~~~~~~----a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~  174 (486)
                      .+++.+++++    ++|++.++++|+++|++.+.. +...+++.|++|+++|++++++.+.+.++|.+++|.+++.+.+.
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  181 (451)
T 1pw4_A          102 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW  181 (451)
T ss_dssp             HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999    999999999999999999988 77889999999999999999999999999999999999998888


Q ss_pred             CC-cHHHHHHhHHHHHHHH-HHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccch
Q 011416          175 LD-WRWLLGLSSIPSFILL-AFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELV  252 (486)
Q Consensus       175 ~~-w~~~f~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (486)
                      .| ||+.|++.+++.++.. +.++++||+|+....+++.+..+                         +.+++.      
T Consensus       182 ~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~------  230 (451)
T 1pw4_A          182 FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKN-------------------------DYPDDY------  230 (451)
T ss_dssp             TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCC-------------------------C-----------
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcc-------------------------cccccc------
Confidence            88 9999999988877754 45667788765321111000000                         000000      


Q ss_pred             hhcccCCCCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhH
Q 011416          253 HLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLY  332 (486)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (486)
                            +..++++........+.+++++.   ++...+..+.....++....+.+.+.+          +..|.++.+.+
T Consensus       231 ------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~g~~~~~~~  291 (451)
T 1pw4_A          231 ------NEKAEQELTAKQIFMQYVLPNKL---LWYIAIANVFVYLLRYGILDWSPTYLK----------EVKHFALDKSS  291 (451)
T ss_dssp             --------------CCTHHHHHHTSSCHH---HHHHHHHHHHHHHHHHHHHHHHHHHBT----------TBSCCCHHHHH
T ss_pred             ------hhhhhcccccccchHHHHHcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HhcCCCHHHHH
Confidence                  00000000111112344554433   333444444455566666667776552          23588899999


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHh--chhHHHHHHHHHHH-HHHHHHhhh--chhHHHHHHHHHHHHhhhhhhhhHhhhc
Q 011416          333 IDEFITSLAEIPGLLLAAILVDTA--GRKLSITIMFTLSC-LFLLPLVTY--QSNILTTGLLFGARMCVMGAFTVSLIYA  407 (486)
Q Consensus       333 ~~~~~~~i~~~~~~~~~g~l~dr~--g~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (486)
                      .......++.+++.++.|++.||+  ++|+.+..+..+.. ++++++...  .+.+......++.+++.+...+....+.
T Consensus       292 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  371 (451)
T 1pw4_A          292 WAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHA  371 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence            999999999999999999999999  99988887776666 555555543  3555666677778888888888889999


Q ss_pred             cccccccchhhHhHHHHHHHHH-HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhccc
Q 011416          408 AEIYPTSVRSTGAGAANAMGRI-GGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIP  469 (486)
Q Consensus       408 ~~~~~~~~~~~~~g~~~~~~~~-g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  469 (486)
                      .|.+|++.|++++|+.+.+.++ |..++|.+.|.+.+..|+...+++.+++.+++.++.+...
T Consensus       372 ~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  434 (451)
T 1pw4_A          372 LELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM  434 (451)
T ss_dssp             HHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999 9999999999999999998888888888888777666654

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=100.00  E-value=4.7e-40  Score=316.44  Aligned_cols=376  Identities=11%  Similarity=0.026  Sum_probs=296.7

Q ss_pred             CCchHHHHHHHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHH
Q 011416           19 FGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEAL   98 (486)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~   98 (486)
                      .+++++..+..+++..+..+++....++..|.+.+++|++..+.|++.+++.+++.++++++|+++||+|||++++++.+
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~   99 (438)
T 3o7q_A           20 QSRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLF   99 (438)
T ss_dssp             --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             hhhHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHH
Confidence            34556667777788888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhh---hcCCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHh-c
Q 011416           99 VTAGAGLLS---SFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIM-P  173 (486)
Q Consensus        99 ~~~~~~~~~---~~a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~-~  173 (486)
                      +.+++.+++   ++++|++.+++.|++.|++.+.. +...+++.|++|+++|++++++.+.+.++|.++++.+++.+. +
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  179 (438)
T 3o7q_A          100 LYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILS  179 (438)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHT
T ss_pred             HHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999   89999999999999999999988 788899999999999999999999999999999999999988 5


Q ss_pred             CCC-------------------------cHHHHHHhHHHHHHHHHHhhc--cCCCchhhhhcCChHHHHHHHHHHHHhcC
Q 011416          174 RLD-------------------------WRWLLGLSSIPSFILLAFLGF--QPESPRYLCLKGRTAEAHRALEKIAQVNK  226 (486)
Q Consensus       174 ~~~-------------------------w~~~f~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (486)
                      ..+                         ||+.|++.+++.++..+..++  .||+++....++                 
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-----------------  242 (438)
T 3o7q_A          180 NVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDA-----------------  242 (438)
T ss_dssp             SSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCS-----------------
T ss_pred             ccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccc-----------------
Confidence            554                         999998887776665444333  344332100000                 


Q ss_pred             CCCCCchhhhccccCCCCCCCCccchhhcccCCCCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011416          227 TKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLI  306 (486)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (486)
                                                            +++.....++++++++..+....   ..+.....++....+.
T Consensus       243 --------------------------------------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  281 (438)
T 3o7q_A          243 --------------------------------------KQGSFSASLSRLARIRHWRWAVL---AQFCYVGAQTACWSYL  281 (438)
T ss_dssp             --------------------------------------STTSHHHHHHHHTTCSHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred             --------------------------------------cccchhhhHHHHHhChHHHHHHH---HHHHHHHHHHHHHHHH
Confidence                                                  00111124555665554443333   2333333444444555


Q ss_pred             hhh-ccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHH
Q 011416          307 SEL-SSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILT  385 (486)
Q Consensus       307 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (486)
                      +.+ .+          +..|.+..+++.......++.+++.++.|++.||++||+.+..+.++.+++.+++...++.+. 
T Consensus       282 ~~~~~~----------~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  350 (438)
T 3o7q_A          282 IRYAVE----------EIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVG-  350 (438)
T ss_dssp             HHHHHH----------HSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHH-
T ss_pred             HHHhhh----------ccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHH-
Confidence            544 31          234788999999999999999999999999999999999999999888888777776655544 


Q ss_pred             HHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHHH
Q 011416          386 TGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH-QMTAVVLLVVVIVTSILS  464 (486)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g-~~~~~~~~~~~~~~~~~~  464 (486)
                      ....++.+++.+...+..+++..|.+|++ ++.+.++.. .+.+++.++|.+.|.+.|..| +...+.+.+++.++..++
T Consensus       351 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  428 (438)
T 3o7q_A          351 LIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF  428 (438)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence            34446777888888999999999999977 888888877 778999999999999999999 887777765555544443


Q ss_pred             H
Q 011416          465 V  465 (486)
Q Consensus       465 ~  465 (486)
                      .
T Consensus       429 ~  429 (438)
T 3o7q_A          429 A  429 (438)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=100.00  E-value=1.2e-35  Score=289.86  Aligned_cols=415  Identities=11%  Similarity=-0.004  Sum_probs=264.3

Q ss_pred             HHHHHHhhHhhhh-chhchhhhh-----cCCCcchhHHHHHHHHHHHHHHHHHHhhhhhh-hcchHHHHHHHHHHHHhhh
Q 011416           33 GWVAEAMEIMILS-FVGPTVKSE-----WNLSSTEESLITTSVFAGLVVGAYAWGLVADN-YGRRMGFLGEALVTAGAGL  105 (486)
Q Consensus        33 ~~~~~~~~~~~~~-~~~~~~~~~-----~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~G~r~~~~~~~~~~~~~~~  105 (486)
                      ..+...+...... ...+.+.++     +|.+..+.|++.+++.++..++++++|+++|| +|||+++..+.++.+++.+
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~  100 (491)
T 4aps_A           21 TEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHI  100 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence            3344433333333 333444444     99999999999999999999999999999999 8999999999999999999


Q ss_pred             hhhcCCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Q 011416          106 LSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSN--RGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLG  182 (486)
Q Consensus       106 ~~~~a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~f~  182 (486)
                      ++++++|++.++++|+++|++.+.. +...+++.|++|+++  |+.++++++.+.++|..++|.+++.+.+..|||+.|+
T Consensus       101 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~  180 (491)
T 4aps_A          101 VLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFS  180 (491)
T ss_dssp             HHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            9999999999999999999999988 788899999999988  7778888999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHHhhcc-CCCch----hhhhcCChHHHHHHHHH--------------HHHhcCCCCCCchhhhccccCCC
Q 011416          183 LSSIPSFILLAFLGFQ-PESPR----YLCLKGRTAEAHRALEK--------------IAQVNKTKLPNGKLVARRSTLPT  243 (486)
Q Consensus       183 ~~~~~~~~~~~~~~~~-~e~~~----~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~  243 (486)
                      +.++..++..+...+. ++..+    ....+.+.++.++..+.              ....+..+.  ++........ .
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~  257 (491)
T 4aps_A          181 LAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSL--PAYINLLTIV-A  257 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCT--THHHHHHHHH-H
T ss_pred             HHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCccc--ccchhhhhHH-H
Confidence            9877666654443322 22111    00011122222221111              000111000  0000000000 0


Q ss_pred             CCCCCccchhhcccCCCCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCcccc
Q 011416          244 GERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFS  323 (486)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (486)
                       ..  ..........++...        ...+  +++. ...+..+...+.....+.....+.+.+..          +.
T Consensus       258 -~~--~~~~~~~~~~~~~~~--------~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~  313 (491)
T 4aps_A          258 -IA--IPVFYFAWMISSVKV--------TSTE--HLRV-VSYIPLFIAAVLFWAIEEQGSVVLATFAA----------ER  313 (491)
T ss_dssp             -HH--HHHHHHHHHC----------------------C-TTHHHHHHHHHHHHHHHGGGGTHHHHHHH----------HS
T ss_pred             -HH--HHHHHHHHHhhcccc--------cHHH--HHHH-HHHHHHHHHHHHHHHHHhhccHHHHHHHH----------HH
Confidence             00  000000000000000        0000  0000 11111111111111222211122221111          11


Q ss_pred             CCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHH-----HHHHHHHHHHHHHhhh---------chhHHHHHHH
Q 011416          324 HHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSIT-----IMFTLSCLFLLPLVTY---------QSNILTTGLL  389 (486)
Q Consensus       324 ~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~-----~~~~~~~~~~~~~~~~---------~~~~~~~~~~  389 (486)
                      .+.+....+.......+..+++.++.+++.||++||+...     .+..+.+++++++...         .+.+......
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (491)
T 4aps_A          314 VDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSW  393 (491)
T ss_dssp             CCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHH
T ss_pred             hccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHH
Confidence            2344456667777888888999999999999999876544     6666666666655542         2455666677


Q ss_pred             HHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhccc
Q 011416          390 FGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIP  469 (486)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  469 (486)
                      ++.+++.+...+..+.+..|.+|++.|+++.|+.+...++|..++|.+.+.+.+. ++...+..++++++++.++.+.+.
T Consensus       394 ~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  472 (491)
T 4aps_A          394 ALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLS  472 (491)
T ss_dssp             HHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7788888888899999999999999999999999999999999999998877654 666778888888887777777666


Q ss_pred             ccccCC
Q 011416          470 FETKGQ  475 (486)
Q Consensus       470 ~~~~~~  475 (486)
                      ++.+++
T Consensus       473 ~~~~~~  478 (491)
T 4aps_A          473 KRIQGL  478 (491)
T ss_dssp             ------
T ss_pred             HHHHHH
Confidence            555443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=100.00  E-value=4.7e-36  Score=282.31  Aligned_cols=352  Identities=13%  Similarity=0.020  Sum_probs=273.8

Q ss_pred             HHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhh
Q 011416           28 AYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLS  107 (486)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~  107 (486)
                      ..+++..+...++...+.+..|.+.+++|.|..+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~   82 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA   82 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence            45566778888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHhHH
Q 011416          108 SFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSI  186 (486)
Q Consensus       108 ~~a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~f~~~~~  186 (486)
                      ++++|++.+++.|++.|++.+.. +...+++.|++|+++|++++++.+.+.++|..++|.+++.+.+..+||+.|++.++
T Consensus        83 ~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~  162 (375)
T 2gfp_A           83 VTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLV  162 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHH
Confidence            99999999999999999999988 77789999999999999999999999999999999999999888899999999888


Q ss_pred             HHHHHHH-HhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCCCCccc
Q 011416          187 PSFILLA-FLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTE  265 (486)
Q Consensus       187 ~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (486)
                      +.++..+ ..+++||+++...+  + +                                                     
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~--~-~-----------------------------------------------------  186 (375)
T 2gfp_A          163 LCAGVTFSMARWMPETRPVDAP--R-T-----------------------------------------------------  186 (375)
T ss_dssp             HHHHHHCCCCCSSCCCSTTTCC--C-C-----------------------------------------------------
T ss_pred             HHHHHHHHHHHHCcccCCCCcc--c-c-----------------------------------------------------
Confidence            8777655 45566776532100  0 0                                                     


Q ss_pred             CCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHH
Q 011416          266 GKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPG  345 (486)
Q Consensus       266 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  345 (486)
                        .....++++++++.   ++......+......+....+.+.+.          .+..|.++.+.+.......++.+++
T Consensus       187 --~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~g~~~~~~g~~~~~~~~~~~~~  251 (375)
T 2gfp_A          187 --RLLTSYKTLFGNSG---FNCYLLMLIGGLAGIAAFEACSGVLM----------GAVLGLSSMTVSILFILPIPAAFFG  251 (375)
T ss_dssp             --CTTTCSTHHHHHHH---HHHHHHHHHHHHHHHHHHHHHCSCSS----------HHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred             --cHHHHHHHHhcCcc---hHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHhCCCHHHHHHHHHHHHHHHHHH
Confidence              00002333444333   33333333344444445555555333          2235678888899999999999999


Q ss_pred             HHHHHHHHHHhchhHHHHHHHHH-HHHHHH--HHhh--hchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHh
Q 011416          346 LLLAAILVDTAGRKLSITIMFTL-SCLFLL--PLVT--YQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGA  420 (486)
Q Consensus       346 ~~~~g~l~dr~g~~~~~~~~~~~-~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (486)
                      .++.+++.||++++..  .+... ...+..  ....  ..+.+......++.+++.+...+....+..|..| ++|+++.
T Consensus       252 ~~~~~~l~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~  328 (375)
T 2gfp_A          252 AWFAGRPNKRFSTLMW--QSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAG  328 (375)
T ss_dssp             HHHHHTTTTHHHHHHH--HHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHH
Confidence            9999999999887322  22222 222222  1111  2245555566777888888889999999999998 7899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHH
Q 011416          421 GAANAMGRIGGMVCPLVAVALVANCHQMTAVVL  453 (486)
Q Consensus       421 g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~  453 (486)
                      |+.+...++|..++|.+.|.+.+..++...+..
T Consensus       329 g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~  361 (375)
T 2gfp_A          329 ALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLM  361 (375)
T ss_dssp             HHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence            999999999999999999999887666554444

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=100.00  E-value=1.9e-32  Score=260.77  Aligned_cols=382  Identities=13%  Similarity=0.029  Sum_probs=248.2

Q ss_pred             HHHHhhHhhhhchhch-hhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhh---hhcC
Q 011416           35 VAEAMEIMILSFVGPT-VKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLL---SSFS  110 (486)
Q Consensus        35 ~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~---~~~a  110 (486)
                      +..........+.+|. +++++|+|..+.|++.+.+.+++.++++++|+++||+|||++++++..+.+++...   ..++
T Consensus        17 ~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~   96 (417)
T 2cfq_A           17 FFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFG   96 (417)
T ss_dssp             HHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444455566666 45679999999999999999999999999999999999999999988877653221   1222


Q ss_pred             CCHH-HHHHHHHHHHhccCcc-hhhhhhhccccCC--CchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHhHH
Q 011416          111 PNYI-TLITLRCLVGVGLGSG-HVFLSWFLEFVPP--SNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSI  186 (486)
Q Consensus       111 ~~~~-~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~f~~~~~  186 (486)
                      +... .+...+++.|++.+.. +...+.+.++.++  ++++...+....+.++|..++|.+++.+.+ .+||..|++.++
T Consensus        97 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~  175 (417)
T 2cfq_A           97 PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSG  175 (417)
T ss_dssp             HHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHH
Confidence            2111 1344566666655544 3333334344432  456777788888889999999999999876 589999998877


Q ss_pred             HHHHHHHHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCCCCcccC
Q 011416          187 PSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEG  266 (486)
Q Consensus       187 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (486)
                      +.++..+..++.+|+++.   +.+.++                            .++                  ++++
T Consensus       176 ~~~~~~~~~~~~~~~~~~---~~~~~~----------------------------~~~------------------~~~~  206 (417)
T 2cfq_A          176 CALILAVLLFFAKTDAPS---SATVAN----------------------------AVG------------------ANHS  206 (417)
T ss_dssp             TTTTHHHHSCSSCCCCSC---SSCSSS----------------------------SSS------------------SCCC
T ss_pred             HHHHHHHHHHHcCccccc---cccccc----------------------------ccc------------------cccc
Confidence            755555555554443310   000000                            000                  0000


Q ss_pred             CCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHH
Q 011416          267 KSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGL  346 (486)
Q Consensus       267 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  346 (486)
                      +.....++++++++..+........   ....++....+.+.+....       .+..+.+....+.......++.+++.
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~g~~~~~~~~~~~~~~  276 (417)
T 2cfq_A          207 AFSLKLALELFRQPKLWFLSLYVIG---VSCTYDVFDQQFANFFTSF-------FATGEQGTRVFGYVTTMGELLNASIM  276 (417)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHT-------SSSHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHhcCCchhhHHHHHHH---HHHHHHHHHHHHHHHHHHH-------HhccCCChhHHHHHHHHHHHHHHHHH
Confidence            0111234455555443333222111   1112222222222221100       00011223445667777778889999


Q ss_pred             HHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHH-HH
Q 011416          347 LLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAA-NA  425 (486)
Q Consensus       347 ~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~  425 (486)
                      ++.+++.||+|||+.+..+..+.++..+.+...++.+...+..++.+++.+...+..+.+..|.+|++.|++++++. +.
T Consensus       277 ~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~  356 (417)
T 2cfq_A          277 FFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCF  356 (417)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence            99999999999999998888888777766665555555555555566666666677788999999999999999994 78


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhcccccccCCC
Q 011416          426 MGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQE  476 (486)
Q Consensus       426 ~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (486)
                      ..++|+.++|.+.|.+.+..|+...|.+.+++.+++.++.+...+|+++.+
T Consensus       357 ~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~  407 (417)
T 2cfq_A          357 FKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLS  407 (417)
T ss_dssp             THHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred             HHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchH
Confidence            888999999999999999888878888888888888777776666555444

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.97  E-value=2.5e-31  Score=261.48  Aligned_cols=424  Identities=10%  Similarity=0.020  Sum_probs=242.4

Q ss_pred             HHHHHhhHhhhhchh-chhhhhcC------CCcchhHHHHHHHHHHHHHHHHHHhhhhhhh-cchHHHHHHHHHHHHhhh
Q 011416           34 WVAEAMEIMILSFVG-PTVKSEWN------LSSTEESLITTSVFAGLVVGAYAWGLVADNY-GRRMGFLGEALVTAGAGL  105 (486)
Q Consensus        34 ~~~~~~~~~~~~~~~-~~~~~~~~------~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-G~r~~~~~~~~~~~~~~~  105 (486)
                      .++.........+.+ +.+.+++|      ++..+.|++.+++.++..++.+++|+++||+ |||+++..+.++.+++.+
T Consensus        21 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~  100 (524)
T 2xut_A           21 EACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHA  100 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            344433333333334 45677899      9999999999999999999999999999999 999999999999999999


Q ss_pred             hhhcCC-CHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHH---HHHHHHHHHHHHHHHHHHHhcCCCcHHH
Q 011416          106 LSSFSP-NYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVI---FSSFWTIGSVSEAIGAWIIMPRLDWRWL  180 (486)
Q Consensus       106 ~~~~a~-~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~i~~~l~~~l~~~~~w~~~  180 (486)
                      ++++++ |++.+++.|++.|++.+.. +...+++.|++|+++|+++.+.   .+.+.++|.+++|.+++.+.+..+||+.
T Consensus       101 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~  180 (524)
T 2xut_A          101 FLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVA  180 (524)
T ss_dssp             HHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHH
T ss_pred             HHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence            999999 9999999999999999988 7888999999999999876666   9999999999999999999988999999


Q ss_pred             HHHhHHHHHHHHHHhhccCC-CchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhh--hcc------ccCCCCCCCCc--
Q 011416          181 LGLSSIPSFILLAFLGFQPE-SPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLV--ARR------STLPTGERAPP--  249 (486)
Q Consensus       181 f~~~~~~~~~~~~~~~~~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~------~~~~~~~~~~~--  249 (486)
                      |++.+++.++..+...+.++ .++....+++..+..+......+  .+....+...  ...      ...........  
T Consensus       181 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (524)
T 2xut_A          181 FGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALL--TKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIV  258 (524)
T ss_dssp             HHHHHHHHHHHHHHHHSSSSSCCCCC----------------------CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSS
T ss_pred             HHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHh--hhhcccCccchhhhhhhhhhhhhhhcccchhhhh
Confidence            99988877665554443322 11100000000000000000000  0000000000  000      00000000000  


Q ss_pred             --------------cchhh--cccCCCCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhccc
Q 011416          250 --------------ELVHL--LSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYY-AVVLLISELSSL  312 (486)
Q Consensus       250 --------------~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  312 (486)
                                    .....  .++.......         +...+.+........+.........+. ....+.....  
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  327 (524)
T 2xut_A          259 AGLCCAMVLVMGFVGAGASLQLERARKSHPD---------AAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQAN--  327 (524)
T ss_dssp             HHHHHHHHHHHHHHHTGGGTHHHHSCCSCCS---------SSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHH--
T ss_pred             hhhhhhhhhhhcccccchhhHHhhhhccccH---------hHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHH--
Confidence                          00000  0000000000         000001111111111111000000000 0000100000  


Q ss_pred             cccCCCCccccCCCCC-chhHHHHHHHHhhHHHHHHHHHHHH----HHhch----hHHHHHHHHHHHHHHHHHhhh----
Q 011416          313 DTRCRSPLMFSHHPQD-ANLYIDEFITSLAEIPGLLLAAILV----DTAGR----KLSITIMFTLSCLFLLPLVTY----  379 (486)
Q Consensus       313 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~g~l~----dr~g~----~~~~~~~~~~~~~~~~~~~~~----  379 (486)
                                ..+.+. ...+.......++.+++..+.+++.    ||.++    ++.+.++.++.+++++++...    
T Consensus       328 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  397 (524)
T 2xut_A          328 ----------DMVKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMM  397 (524)
T ss_dssp             ----------HSCCCSSSCHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTT
T ss_pred             ----------hcCCCeeecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                      001111 1344444444455555555555443    44432    345666777777777666542    


Q ss_pred             -----chhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhh---------
Q 011416          380 -----QSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANC---------  445 (486)
Q Consensus       380 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~---------  445 (486)
                           .+.+......++.+++.+...+..+.+..|..|++.|++++|+.+...++|+.++|.+.|.+.+..         
T Consensus       398 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~  477 (524)
T 2xut_A          398 DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTG  477 (524)
T ss_dssp             TTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence                 245556667778888888889999999999999999999999999999999999999999887632         


Q ss_pred             -cc-chHHHHHHHHHHHHHHHHhcccccccCCCcccc
Q 011416          446 -HQ-MTAVVLLVVVIVTSILSVMLIPFETKGQELSDT  480 (486)
Q Consensus       446 -g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  480 (486)
                       +. ...+++.+++++++.++.+++.++.++++.++.
T Consensus       478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  514 (524)
T 2xut_A          478 MSVTAFQMFFFAGFAILAAIVFALYARSYQMQDHYRQ  514 (524)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHC--------------
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHHHHHhccchhhhh
Confidence             11 222666777777777766666655555444333

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.70  E-value=1.5e-15  Score=145.98  Aligned_cols=180  Identities=12%  Similarity=0.002  Sum_probs=150.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHH
Q 011416          282 ARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLS  361 (486)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~  361 (486)
                      ++.+...+...+.............+.+.           ++. .+..+.++..+...++..++.++.|+++||+|||++
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~   94 (451)
T 1pw4_A           27 WQIFLGIFFGYAAYYLVRKNFALAMPYLV-----------EQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVF   94 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHTT-----------SST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHH
Confidence            34444444445555555555555566444           456 888899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhh----hchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHH
Q 011416          362 ITIMFTLSCLFLLPLVT----YQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLV  437 (486)
Q Consensus       362 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i  437 (486)
                      +.++.++.+++.++..+    .++.+...+..++.|++.+...+...+++.|.+|+++|++++|+.+....+|..++|.+
T Consensus        95 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~  174 (451)
T 1pw4_A           95 LPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLL  174 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998888    78888888888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhc-cchHHHHHHHHHHHHHHHHhccccccc
Q 011416          438 AVALVANCH-QMTAVVLLVVVIVTSILSVMLIPFETK  473 (486)
Q Consensus       438 ~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (486)
                      .+.+.+..+ |...+++.+++.++..++.++..+|++
T Consensus       175 ~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~  211 (451)
T 1pw4_A          175 FLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTP  211 (451)
T ss_dssp             HHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSS
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCH
Confidence            999999898 999999988888777766655555543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.64  E-value=1.4e-14  Score=138.76  Aligned_cols=174  Identities=16%  Similarity=0.089  Sum_probs=142.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHH
Q 011416          283 RTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSI  362 (486)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~  362 (486)
                      +.....+...+...+.........+.+.           ++++.+..+.++..+...++..++.++.|+++||+|||+.+
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l   94 (438)
T 3o7q_A           26 IPFALLCSLFFLWAVANNLNDILLPQFQ-----------QAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGI   94 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHH-----------HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHH
Confidence            4444445555555555555555566544           45689999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH---hhhchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHH
Q 011416          363 TIMFTLSCLFLLPL---VTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAV  439 (486)
Q Consensus       363 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g  439 (486)
                      ..+.++.+++.++.   ...++.+...+..++.|++.+...+...+++.|.+|+++|+.+.++.+....+|..++|.+.+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~  174 (438)
T 3o7q_A           95 ITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQ  174 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999988888   667788888888899999999999999999999999999999999999999999999999999


Q ss_pred             HHH-Hhhc-------------------------cchHHHHHHHHHHHHHHHHhc
Q 011416          440 ALV-ANCH-------------------------QMTAVVLLVVVIVTSILSVML  467 (486)
Q Consensus       440 ~l~-~~~g-------------------------~~~~~~~~~~~~~~~~~~~~~  467 (486)
                      .+. +..+                         |...+++.+++.++..++.+.
T Consensus       175 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  228 (438)
T 3o7q_A          175 SLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML  228 (438)
T ss_dssp             HHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            988 4443                         566776666666555544443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.59  E-value=5.5e-14  Score=136.68  Aligned_cols=179  Identities=13%  Similarity=0.009  Sum_probs=146.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHH-hchhHHHH
Q 011416          285 TILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDT-AGRKLSIT  363 (486)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr-~g~~~~~~  363 (486)
                      .+..+...+...+.++....+.+.+.....     ..++.|.+..+.++..+...++..++.++.|+++|| +|||+++.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~   89 (491)
T 4aps_A           15 LSTLFMTEMWERFSYYGMRAILLYYMWFLI-----STGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVF   89 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----chhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence            344444555555566655555554431100     012268999999999999999999999999999999 89999999


Q ss_pred             HHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccc--hhhHhHHHHHHHHHHHHHHHHHHHHH
Q 011416          364 IMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV--RSTGAGAANAMGRIGGMVCPLVAVAL  441 (486)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~g~~~~~~i~g~l  441 (486)
                      .+.++.+++.++....++.+...+..++.|++.+...+...+++.|.+|+++  |+.+.++.+...++|..++|.+.+.+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  169 (491)
T 4aps_A           90 WGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAA  169 (491)
T ss_dssp             HHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999888888888888888899999999999999999999999988  77888889999999999999999999


Q ss_pred             HHhhccchHHHHHHHHHHHHHHHHhcc
Q 011416          442 VANCHQMTAVVLLVVVIVTSILSVMLI  468 (486)
Q Consensus       442 ~~~~g~~~~~~~~~~~~~~~~~~~~~~  468 (486)
                      .+..||...+++.++..+++.+..+..
T Consensus       170 ~~~~g~~~~f~~~~~~~~~~~~~~~~~  196 (491)
T 4aps_A          170 QEAAGYHVAFSLAAIGMFIGLLVYYFG  196 (491)
T ss_dssp             HHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999988877777666655544

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.55  E-value=2.6e-14  Score=133.75  Aligned_cols=153  Identities=14%  Similarity=0.029  Sum_probs=136.9

Q ss_pred             ccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhh
Q 011416          322 FSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFT  401 (486)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (486)
                      ++.|.++.+.++..+...++..++.++.|+++||+|||+.+..+..+.+++.+.....++.+...+..++.|++.+...+
T Consensus        28 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~  107 (375)
T 2gfp_A           28 RDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGV  107 (375)
T ss_dssp             TTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhh
Confidence            56689999999999999999999999999999999999999999999999988888888888888888889999999999


Q ss_pred             hHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhcccccccC
Q 011416          402 VSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKG  474 (486)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (486)
                      ...+++.|..|+++|++++++.+....+|..++|.+.+.+.+..+|...+.+.+++.++..+......||+++
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (375)
T 2gfp_A          108 MARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRP  180 (375)
T ss_dssp             HHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCST
T ss_pred             hHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCC
Confidence            9999999999999999999999999999999999999999888889888888888877777655555555543

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.51  E-value=1.1e-13  Score=131.46  Aligned_cols=146  Identities=9%  Similarity=-0.017  Sum_probs=122.8

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHhccCcc-hhhhhh
Q 011416           58 SSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSW  136 (486)
Q Consensus        58 s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~-~~~~~~  136 (486)
                      +..+.+++.++..++..++.++.|+++||+|||+++..+..+.+++.++.++.++.+.+++..++.+++.+.. +....+
T Consensus       257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  336 (417)
T 2cfq_A          257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY  336 (417)
T ss_dssp             HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556688888888899999999999999999999999999888888888888889888888888888876655 556678


Q ss_pred             hccccCCCchhHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHhHHHHHHHHHH-hhccCCCch
Q 011416          137 FLEFVPPSNRGMWMVI-FSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAF-LGFQPESPR  203 (486)
Q Consensus       137 i~~~~~~~~r~~~~~~-~~~~~~~G~~i~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~-~~~~~e~~~  203 (486)
                      +.|.+|++.|+++.++ ++....+|..++|.+++.+.+..|++..|.+.+++.++..+. +...||+++
T Consensus       337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~  405 (417)
T 2cfq_A          337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP  405 (417)
T ss_dssp             HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence            9999999999999998 478888999999999999988889999999888887776554 444565443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.50  E-value=3.6e-13  Score=132.07  Aligned_cols=172  Identities=14%  Similarity=0.034  Sum_probs=140.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCC------CCCchhHHHHHHHHhhHHHHHHHHHHHHHHh-chhH
Q 011416          288 LWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHH------PQDANLYIDEFITSLAEIPGLLLAAILVDTA-GRKL  360 (486)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~-g~~~  360 (486)
                      .+...+...+.++....+.+.+..          ++.+      .++.+.++......++..++.++.|+++||+ |||+
T Consensus        17 ~~~~~~~~~~~~~~~~~~l~~~l~----------~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~   86 (524)
T 2xut_A           17 IIASEACERFSFYGMRNILTPFLM----------TALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYN   86 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH----------HSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----------HHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence            444444455555555555554331          2345      8899999999999999999999999999999 9999


Q ss_pred             HHHHHHHHHHHHHHHHhhhc-hhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHH---HHHHHHHHHHHHHH
Q 011416          361 SITIMFTLSCLFLLPLVTYQ-SNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGA---ANAMGRIGGMVCPL  436 (486)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~g~~~~~~  436 (486)
                      .+.++.++.+++.++....+ +.+...+..++.|++.+...+...+++.|.+|+++|+++.+.   .+...++|..++|.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~  166 (524)
T 2xut_A           87 TILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASL  166 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998888888777 777788888889999999999999999999999999776666   88889999999999


Q ss_pred             HHHHHHHhhccchHHHHHHHHHHHHHHHHhccc
Q 011416          437 VAVALVANCHQMTAVVLLVVVIVTSILSVMLIP  469 (486)
Q Consensus       437 i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  469 (486)
                      +.+.+.+..+|...|.+.+++.+++.+..+...
T Consensus       167 ~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~  199 (524)
T 2xut_A          167 SMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGR  199 (524)
T ss_dssp             TSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred             HHHHHhccccHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999988999888888877776666555443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.29  E-value=1.5e-11  Score=119.42  Aligned_cols=171  Identities=15%  Similarity=0.058  Sum_probs=124.9

Q ss_pred             HHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcC-
Q 011416           32 LGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFS-  110 (486)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a-  110 (486)
                      ...+........+....|.+.++.+.+..+.........+...++.++.+++.||+|||+.++.+....+++.+..+.. 
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~  363 (491)
T 4gc0_A          284 LSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAF  363 (491)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHH
Confidence            3334444444555566778888888888888888888889999999999999999999999999888887776655432 


Q ss_pred             ---CCHHHHH--HHHHHHHhccCcchhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc------CCCcHH
Q 011416          111 ---PNYITLI--TLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMP------RLDWRW  179 (486)
Q Consensus       111 ---~~~~~l~--~~r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~------~~~w~~  179 (486)
                         .+.+..+  +.-+..+++.+..+....+.+|.+|.+.|++++|+......+|..+++.+...+.+      ..++..
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~  443 (491)
T 4gc0_A          364 YTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGF  443 (491)
T ss_dssp             HTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCH
T ss_pred             hcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence               1222222  22233344444446677889999999999999999999999999888877655432      345667


Q ss_pred             HHHHhHHHHHHHH-HHhhccCCCc
Q 011416          180 LLGLSSIPSFILL-AFLGFQPESP  202 (486)
Q Consensus       180 ~f~~~~~~~~~~~-~~~~~~~e~~  202 (486)
                      .|++.++++++.. +.++++||+.
T Consensus       444 ~~~i~~~~~~~~~i~~~~~~PETk  467 (491)
T 4gc0_A          444 SYWIYGCMGVLAALFMWKFVPETK  467 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred             HHHHHHHHHHHHHHHHHheecCCC
Confidence            7888888777764 4577889984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	486
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	4e-15
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	4e-05

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 75.1 bits (183), Expect = 4e-15
 Identities = 51/467 (10%), Positives = 123/467 (26%), Gaps = 55/467 (11%)

Query: 19  FGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAY 78
           + + +  +      G+ A  +     +   P +  E   S  +     + +        +
Sbjct: 19  YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKF 77

Query: 79  AWGLVADNYGRR----MGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGL-GSGHVF 133
             G V+D    R     G +  A V    G +   + +   +  L  L G          
Sbjct: 78  IMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPC 137

Query: 134 LSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAI--GAWIIMPRLDWRWLLGLSSIPSFIL 191
               + +     RG  + +++    +G     +     +         L   +     + 
Sbjct: 138 GRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVA 197

Query: 192 LAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPEL 251
           L       ++P+   L       +   +   +  + +L   ++  +              
Sbjct: 198 LFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQY------------- 244

Query: 252 VHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSS 311
                                              LLW +   N F Y     ++    +
Sbjct: 245 ------------------------------VLPNKLLWYIAIANVFVYLLRYGILDWSPT 274

Query: 312 LDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCL 371
                +   +                 +L  + G +   +     G      +       
Sbjct: 275 YLKEVKHFALDKSSWAYFLYEYAGIPGTL--LCGWMSDKVFRGNRGATGVFFMTLVTIAT 332

Query: 372 FLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGG 431
            +  +    +  +    +      + G   +  ++A E+ P     T AG     G +GG
Sbjct: 333 IVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGG 392

Query: 432 MVCPLVAVALVANCH--QMTAVVLLVVVIVTSILSVMLIPFETKGQE 476
            V     V    +        +V++   I+  IL ++++  E +  E
Sbjct: 393 SVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHE 439

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 43.6 bits (101), Expect = 4e-05
 Identities = 38/430 (8%), Positives = 100/430 (23%), Gaps = 55/430 (12%)

Query: 42  MILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTA 101
               F    +    ++S ++  +I  ++    ++    +GL++D  G R   L       
Sbjct: 25  AYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGML 84

Query: 102 GAGLLSSFSPNYITLITLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGS 161
                         L     +  +  G    F          +         +  +    
Sbjct: 85  VMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRAR 144

Query: 162 VSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKI 221
           +   +G  +    +   + +    +        L                          
Sbjct: 145 MFGCVGWALGASIVGIMFTINNQFVFWLGSGCALIL------------------------ 180

Query: 222 AQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKL 281
                                    A  +     +             L L L LF    
Sbjct: 181 -------------------AVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPK 221

Query: 282 ARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLA 341
                L  + +      +                  +    +             +  L 
Sbjct: 222 LWFLSLYVIGVSCTYDVFDQQFAN----------FFTSFFATGEQGTRVFGYVTTMGELL 271

Query: 342 EIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFT 401
               +  A ++++  G K ++ +  T+  + ++      S +    L       V     
Sbjct: 272 NASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLV 331

Query: 402 VSLIYAAEIYPTSVRSTGAGAANAMGR-IGGMVCPLVAVALVANC-HQMTAVVLLVVVIV 459
               Y    +     +T         + +  +   ++A  +  +   Q   +VL +V + 
Sbjct: 332 GCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALG 391

Query: 460 TSILSVMLIP 469
            +++SV  + 
Sbjct: 392 FTLISVFTLS 401

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	486
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	100.0
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	100.0
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.62
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.6

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.7e-41  Score=325.10  Aligned_cols=404  Identities=13%  Similarity=0.114  Sum_probs=299.3

Q ss_pred             CCchHHHHHHHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHH
Q 011416           19 FGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEAL   98 (486)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~   98 (486)
                      .++++|.++..++++++..++++..++.+.|.+. |+|+|.+|+|++.+++.+++.++++++|+++||+|||+++..+.+
T Consensus        19 ~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~   97 (447)
T d1pw4a_          19 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI   97 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence            4577899999999999999999999999999876 589999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhhcC----CCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011416           99 VTAGAGLLSSFS----PNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMP  173 (486)
Q Consensus        99 ~~~~~~~~~~~a----~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~  173 (486)
                      +.+++.++++++    ++++.+++.|++.|++.+.. +...+++.|++|+++|++++++.+.+.++|..+++.+++.+.+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~  177 (447)
T d1pw4a_          98 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA  177 (447)
T ss_dssp             HHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred             HHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhh
Confidence            999999988876    47889999999999999888 7788899999999999999999999999999999998887665


Q ss_pred             -CCCcHHHHHHhHHHHHHHHH-HhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccc
Q 011416          174 -RLDWRWLLGLSSIPSFILLA-FLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPEL  251 (486)
Q Consensus       174 -~~~w~~~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (486)
                       ..+||+.|++.+++.++..+ .+.+.+|+|+........+..++.                         .        
T Consensus       178 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~--------  224 (447)
T d1pw4a_         178 WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDY-------------------------P--------  224 (447)
T ss_dssp             HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-----------------------------------
T ss_pred             hhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhc-------------------------c--------
Confidence             45899999998887777644 455556555422111110000000                         0        


Q ss_pred             hhhcccCCCCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchh
Q 011416          252 VHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANL  331 (486)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (486)
                          +...+..+.+........+..++++.   ++......+......+....+.+.+.          .+..+.+..+.
T Consensus       225 ----~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~  287 (447)
T d1pw4a_         225 ----DDYNEKAEQELTAKQIFMQYVLPNKL---LWYIAIANVFVYLLRYGILDWSPTYL----------KEVKHFALDKS  287 (447)
T ss_dssp             ---------------CCTHHHHHHTSSCHH---HHHHHHHHHHHHHHHHHHHHHHHHHB----------TTBSCCCHHHH
T ss_pred             ----cchhhccccccchhhHHHHHHHcCch---HHHHHHHhhhhhhhhhcchhhhhhhc----------ccccccccchh
Confidence                00000000111111123344444433   33333344444455555566666554          24567888999


Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHH---HHHHHHhh--hchhHHHHHHHHHHHHhhhhhhhhHhhh
Q 011416          332 YIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSC---LFLLPLVT--YQSNILTTGLLFGARMCVMGAFTVSLIY  406 (486)
Q Consensus       332 ~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (486)
                      +.......+..+++.++.|++.||++|+...........   ++.+....  ..+.+...+..++.+++..+..+....+
T Consensus       288 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  367 (447)
T d1pw4a_         288 SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLH  367 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             hhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999987654333322222   22222222  3455566666777788888888889999


Q ss_pred             ccccccccchhhHhHHHHHHHHHH-HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhccccccc
Q 011416          407 AAEIYPTSVRSTGAGAANAMGRIG-GMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETK  473 (486)
Q Consensus       407 ~~~~~~~~~~~~~~g~~~~~~~~g-~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (486)
                      ..|.+|++.|+++.|+.+.+++++ ..++|.+.|.+.|..|+...+.+.+++.+++.++...+.++++
T Consensus       368 ~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (447)
T d1pw4a_         368 ALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK  435 (447)
T ss_dssp             HHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999998874 5678999999999999998888888887777766665544333

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.1e-32  Score=257.14  Aligned_cols=390  Identities=11%  Similarity=-0.033  Sum_probs=269.7

Q ss_pred             HHHHHHHHHHhhHhhhhchhch-hhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhh
Q 011416           29 YAGLGWVAEAMEIMILSFVGPT-VKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLS  107 (486)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~  107 (486)
                      .+.+.+++..+......+.+|. +.+++|+|.+++|++.+++.+++.++++++|+++||+|||++++++..+..++..+.
T Consensus        11 ~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~   90 (417)
T d1pv7a_          11 MFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPF   90 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence            3444556666666677777776 567799999999999999999999999999999999999999999999999999988


Q ss_pred             hcCCCHHHHHH----HHHHHHhccCcc-hhhhhhhccccC--CCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHH
Q 011416          108 SFSPNYITLIT----LRCLVGVGLGSG-HVFLSWFLEFVP--PSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWL  180 (486)
Q Consensus       108 ~~a~~~~~l~~----~r~l~G~~~~~~-~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~  180 (486)
                      .+..+......    .+.+.+.+.+.. ........+..+  .+++.+..+........+..+++.+++.+.+..+|+..
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  170 (417)
T d1pv7a_          91 FIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVF  170 (417)
T ss_dssp             HHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             HHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccccccccc
Confidence            88877665443    344444433333 222222222222  23455667788888889999999999988775444444


Q ss_pred             HHHhHHHHHHHHHHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCC
Q 011416          181 LGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGG  260 (486)
Q Consensus       181 f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (486)
                      +.......+...+..+..+|+++..   ++.++.++                                            
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--------------------------------------------  203 (417)
T d1pv7a_         171 WLGSGCALILAVLLFFAKTDAPSSA---TVANAVGA--------------------------------------------  203 (417)
T ss_dssp             HHHHHHHHHHHHHHHSSCCCSCSSS---CSSHHHHS--------------------------------------------
T ss_pred             cchhhHHHHHHHHHHHHhcccccch---hhhhhhhh--------------------------------------------
Confidence            4444444444556666667665421   11111000                                            


Q ss_pred             CCcccCCCchhhhHhhhchhhHHHHHHHHHHHH-HHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHH
Q 011416          261 NKTTEGKSGLSLFLMLFSSKLARTTILLWLLLF-GNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITS  339 (486)
Q Consensus       261 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (486)
                         .+++..........+.+..+.......... ...........+....           ....+.+....+.......
T Consensus       204 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~  269 (417)
T d1pv7a_         204 ---NHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSF-----------FATGEQGTRVFGYVTTMGE  269 (417)
T ss_dssp             ---CCCCCCHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-----------SSCHHHHHHHHHHHHHHHH
T ss_pred             ---hcccccccccccccccccccchhhhhHHHHHHHHhhhcccccccccc-----------ccccccchhhhcccccccc
Confidence               000000012222222222222222222222 2222222222222211           1223345556677777888


Q ss_pred             hhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhH
Q 011416          340 LAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTG  419 (486)
Q Consensus       340 i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (486)
                      ++..++..+.+++.||.++++.+..+..+.+++.+.+...++.+...+..++.+++.+...+...++..|.+|++.|+++
T Consensus       270 ~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (417)
T d1pv7a_         270 LLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATI  349 (417)
T ss_dssp             HHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH
T ss_pred             cccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHH
Confidence            88899999999999999999999999999999998888888888888888899999999999999999999999999999


Q ss_pred             hHHHH-HHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhcccccccCCCccc
Q 011416          420 AGAAN-AMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSD  479 (486)
Q Consensus       420 ~g~~~-~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  479 (486)
                      .|+.. ....+|..++|.+.|++.|..|+...+++.+++.++..++..+..++++..+.++
T Consensus       350 ~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r  410 (417)
T d1pv7a_         350 YLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLR  410 (417)
T ss_dssp             HHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhH
Confidence            99865 4567999999999999999999999999999888888877777766555554433

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=1.8e-14  Score=136.01  Aligned_cols=150  Identities=13%  Similarity=0.022  Sum_probs=129.0

Q ss_pred             cCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhh----chhHHHHHHHHHHHHhhhh
Q 011416          323 SHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY----QSNILTTGLLFGARMCVMG  398 (486)
Q Consensus       323 ~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~  398 (486)
                      +.|.+..+.++..+...++..++.++.|+++||+|||+.+..+.++.+++.++....    .+.+...+..++.+++.+.
T Consensus        53 ~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  132 (447)
T d1pw4a_          53 EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGM  132 (447)
T ss_dssp             SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHH
T ss_pred             HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhh
Confidence            568999999999999999999999999999999999999999999988888776653    3566777778888999899


Q ss_pred             hhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHhcccccc
Q 011416          399 AFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANC-HQMTAVVLLVVVIVTSILSVMLIPFET  472 (486)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (486)
                      ..+....++.|.+|+++|++++|+.+....+|..++|.+.+.+.+.. +|...+++.+.+.++..++.+.+.++.
T Consensus       133 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~  207 (447)
T d1pw4a_         133 GWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDT  207 (447)
T ss_dssp             THHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCS
T ss_pred             hhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccc
Confidence            99999999999999999999999999999999999999988877765 577778877777777766666655443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=2.3e-15  Score=140.30  Aligned_cols=162  Identities=7%  Similarity=-0.066  Sum_probs=137.1

Q ss_pred             hhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcCCCHHHHHH
Q 011416           39 MEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLIT  118 (486)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a~~~~~l~~  118 (486)
                      ..........+...++.+.+....+...+...++..++.++.+++.||+|+|+.+..+.++.+++.++..+.++.+.+++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (417)
T d1pv7a_         238 VFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVI  317 (417)
T ss_dssp             HHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred             hhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhH
Confidence            33333334444455556667778888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHhHHHHHHHHHH-h
Q 011416          119 LRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIF-SSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAF-L  195 (486)
Q Consensus       119 ~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~G~~i~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~-~  195 (486)
                      ..++.|++.+.. +...+++.|.+|+++|+++.++. +....+|..++|.+.+.+.+..||+..|++.+++.++..++ .
T Consensus       318 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~  397 (417)
T d1pv7a_         318 LKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISV  397 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999888 77788999999999999999985 45677999999999999999999999999988887776544 4


Q ss_pred             hccCC
Q 011416          196 GFQPE  200 (486)
Q Consensus       196 ~~~~e  200 (486)
                      +.+++
T Consensus       398 ~~l~~  402 (417)
T d1pv7a_         398 FTLSG  402 (417)
T ss_dssp             HHSCC
T ss_pred             HhhcC
Confidence            44443