Citrus Sinensis ID: 011424
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 486 | 2.2.26 [Sep-21-2011] | |||||||
| Q94BZ1 | 478 | Protein ZINC INDUCED FACI | yes | no | 0.962 | 0.979 | 0.694 | 0.0 | |
| Q8RWN2 | 486 | Protein ZINC INDUCED FACI | no | no | 0.977 | 0.977 | 0.658 | 1e-177 | |
| Q3EAQ5 | 484 | Probable peptide/nitrate | no | no | 0.940 | 0.944 | 0.601 | 1e-165 | |
| P25351 | 611 | Uncharacterized membrane | yes | no | 0.448 | 0.356 | 0.324 | 2e-28 | |
| B4EYY4 | 402 | Multidrug resistance prot | yes | no | 0.362 | 0.437 | 0.281 | 6e-10 | |
| A8GCZ5 | 411 | Multidrug resistance prot | no | no | 0.362 | 0.428 | 0.275 | 3e-09 | |
| D8MQN9 | 411 | Multidrug resistance prot | no | no | 0.401 | 0.474 | 0.269 | 3e-09 | |
| P39843 | 400 | Multidrug resistance prot | yes | no | 0.637 | 0.775 | 0.267 | 9e-09 | |
| P0A4K5 | 399 | Multi-drug resistance eff | yes | no | 0.298 | 0.363 | 0.298 | 3e-08 | |
| P0A4K4 | 399 | Multi-drug resistance eff | yes | no | 0.298 | 0.363 | 0.298 | 3e-08 |
| >sp|Q94BZ1|ZIFL1_ARATH Protein ZINC INDUCED FACILITATOR-LIKE 1 OS=Arabidopsis thaliana GN=ZIFL1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/471 (69%), Positives = 385/471 (81%), Gaps = 3/471 (0%)
Query: 16 EKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAK 75
EK ++E+C GCKVDQ+K + G P ELF++WIIVLCTALPISSLFPFLYFMI DF IAK
Sbjct: 11 EKNFHEDCSGCKVDQMKRLRRGFPFWELFTVWIIVLCTALPISSLFPFLYFMIDDFNIAK 70
Query: 76 REEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF 135
+EEDIG YAG+VG SFM GRA TSV WGLVADRYGRKPVI++GTASVV+FNTLFGLS+NF
Sbjct: 71 KEEDIGFYAGFVGCSFMLGRAFTSVAWGLVADRYGRKPVILIGTASVVVFNTLFGLSLNF 130
Query: 136 WMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
WMA++TRF LGS NGLLGPIKAYA EIFR+E+Q L LS VSTAWGIGLIIGPA+GGFLAQ
Sbjct: 131 WMAIITRFCLGSFNGLLGPIKAYAMEIFRDEYQGLALSAVSTAWGIGLIIGPAIGGFLAQ 190
Query: 196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYD 255
PA++YP+LFS +S+FGKFP+FLPCL IS+FAF VTI + +PETLH H +DD SYD
Sbjct: 191 PAKQYPSLFSQDSIFGKFPFFLPCLAISVFAFLVTIVSSRIPETLHNHKFNDDE---SYD 247
Query: 256 ALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKL 315
AL+ S + + + E K SLL NWPL+SSIIVYCVFSLHDMAY+EIFSLWANSP+K
Sbjct: 248 ALKDLSDDPESNKVAERNGKSSLLNNWPLISSIIVYCVFSLHDMAYTEIFSLWANSPRKY 307
Query: 316 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIA 375
GGL YST VG VLA +GF LL+FQLSLY + ER+LGPI+V RI+G L + +L+ YP IA
Sbjct: 308 GGLGYSTADVGSVLAFSGFGLLIFQLSLYSYAERLLGPIIVTRISGSLAMVVLSCYPLIA 367
Query: 376 MLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAG 435
LSG L + ASV K++L S ITGLFILQN+AV QDQRGAANGIAMT MSLFKA G
Sbjct: 368 KLSGLALTVTVTSASVAKSVLGTSAITGLFILQNKAVRQDQRGAANGIAMTAMSLFKAIG 427
Query: 436 PAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQRHD 486
PA G +FSW++KR A+FLPG+QMVFF+LNVV A+GV++TFKPFLA+
Sbjct: 428 PAAAGIIFSWSEKRQGAAFLPGTQMVFFILNVVLALGVVLTFKPFLAETQQ 478
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Major facilitator superfamily (MFS) transporter probably involved in 2,4-dichlorophenoxyacetic acid (2,4-D) export. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8RWN2|ZIF1_ARATH Protein ZINC INDUCED FACILITATOR 1 OS=Arabidopsis thaliana GN=ZIF1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 621 bits (1602), Expect = e-177, Method: Compositional matrix adjust.
Identities = 316/480 (65%), Positives = 378/480 (78%), Gaps = 5/480 (1%)
Query: 6 EKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLY 65
E+ +E L+ ++ Y++ CPGCKV+Q+K + G P EL +WIIVL T+LPISSL+PFLY
Sbjct: 3 EEYKEALLE-KQNYHDGCPGCKVEQMKQLRRGYPYLELSFVWIIVLSTSLPISSLYPFLY 61
Query: 66 FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF 125
+MI+DF +AK E+DIG YAG+VG SFM GRALTSVFWG+VADRYGRKP+I++GT S+ IF
Sbjct: 62 YMIEDFGVAKTEKDIGFYAGFVGCSFMLGRALTSVFWGIVADRYGRKPIILLGTISIAIF 121
Query: 126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLII 185
N LFGLS NFWMA+ TRFLLGS N LLG +KAYA EIFR+E+QA +S VSTAWGIGLII
Sbjct: 122 NALFGLSSNFWMAIGTRFLLGSFNCLLGTMKAYASEIFRDEYQATAMSAVSTAWGIGLII 181
Query: 186 GPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHND 245
GPALGGFLAQPA+KYPN+FS ESLFG+F Y LPC IS FA VT+ ++PETLH H
Sbjct: 182 GPALGGFLAQPADKYPNVFSQESLFGRFRYALPCFTISAFALLVTVLCCFIPETLHNHKL 241
Query: 246 DDDSCDVSYDALESASAEVKEEEGR----EATPKKSLLKNWPLMSSIIVYCVFSLHDMAY 301
D S D SYD LE+AS E G+ E +SLLKNWPLMSSIIVYCV LHD AY
Sbjct: 242 DSLSHDDSYDILEAASHESSPSTGKAGKNERKASQSLLKNWPLMSSIIVYCVLCLHDTAY 301
Query: 302 SEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG 361
SEIF+LWANSP+K GGL+YST VG VLAI+G L FQ+ +YP E++LGP++V R AG
Sbjct: 302 SEIFALWANSPRKYGGLSYSTNEVGTVLAISGLGLFSFQVFVYPLAEKLLGPVLVTRYAG 361
Query: 362 VLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAAN 421
L IP+ SYP+IA LSG L+ +LNCAS++ N+LSVS ITGL ILQNRAVDQ QRGAAN
Sbjct: 362 ALMIPIQMSYPFIAGLSGLSLSLMLNCASILINVLSVSAITGLLILQNRAVDQSQRGAAN 421
Query: 422 GIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFL 481
GIAMT MSLFK GPAG G LFSW+++RL+A+FLPGS MVFFVLNV+ +GV +TFKPFL
Sbjct: 422 GIAMTAMSLFKTVGPAGAGILFSWSERRLNAAFLPGSHMVFFVLNVIVVVGVALTFKPFL 481
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Major facilitator superfamily (MFS) transporter involved in zinc tolerance by participating in vacuolar sequestration of zinc. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3EAQ5|PTR36_ARATH Probable peptide/nitrate transporter At3g43790 OS=Arabidopsis thaliana GN=ZIFL2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 581 bits (1498), Expect = e-165, Method: Compositional matrix adjust.
Identities = 285/474 (60%), Positives = 365/474 (77%), Gaps = 17/474 (3%)
Query: 21 ENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDI 80
E+CPGC +D+ K + G+P L IW++ LCTALPISSLFP++YFMI+DF IAK+EEDI
Sbjct: 15 EDCPGCIIDRTKQQQRGVPYLHLSFIWLVSLCTALPISSLFPYIYFMIRDFHIAKQEEDI 74
Query: 81 GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVL 140
G YAG+VGSSFM GRALTS+FWG +ADRYGRKP+I++GT SV+IFNTLFGLS +FW+A+
Sbjct: 75 GFYAGFVGSSFMIGRALTSIFWGKLADRYGRKPIILIGTFSVIIFNTLFGLSTSFWLAIS 134
Query: 141 TRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY 200
RFLLG N LLG I+AYA E+ EE+ AL LS VST+ GIGLI+GPA+GG+LAQPAEKY
Sbjct: 135 VRFLLGCFNCLLGVIRAYASEVVSEEYNALSLSVVSTSRGIGLILGPAIGGYLAQPAEKY 194
Query: 201 PNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESA 260
PN+FS S+FG+FPYFLP L IS++A V IA +WLPETLH C ++ L
Sbjct: 195 PNIFSQSSVFGRFPYFLPSLVISVYATAVLIACWWLPETLHTR------CRIAQGRLNPT 248
Query: 261 SAEVKEEEG-----REATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKL 315
E G ++ K SLL+N PLM+ IIVYCVFSL ++AY+EIFSLWA S +
Sbjct: 249 ELNDDESRGGGLDEQKIINKPSLLRNRPLMAIIIVYCVFSLQEIAYNEIFSLWAVSDRSY 308
Query: 316 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIA 375
GGL++S+Q VGEVLAI+G LLVFQL +YP LE+ +G + V R++ VL IPLL+ YPYIA
Sbjct: 309 GGLSFSSQDVGEVLAISGLGLLVFQLLVYPPLEKSVGLLAVIRLSAVLLIPLLSCYPYIA 368
Query: 376 MLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAG 435
+LSG L ++NCAS++KN LS+S++TGLFI+ N+AV Q+QRGAANGI+MT MS+FK+ G
Sbjct: 369 LLSGVTLHLVINCASIIKNALSISLVTGLFIMLNKAVPQNQRGAANGISMTAMSVFKSFG 428
Query: 436 PAGGGALFSWAQKRLDASFLPGS------QMVFFVLNVVEAIGVLMTFKPFLAQ 483
PAGGG LFSWAQKR DA+FLPG +MVF VLN+V+ +G+++TF P+++Q
Sbjct: 429 PAGGGVLFSWAQKRQDATFLPGQIFAPCDEMVFLVLNLVQLVGLILTFIPYISQ 482
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Arabidopsis thaliana (taxid: 3702) |
| >sp|P25351|YCR3_YEAST Uncharacterized membrane protein YCR023C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YCR023C PE=1 SV=2 | Back alignment and function description |
|---|
Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 120/225 (53%), Gaps = 7/225 (3%)
Query: 31 LKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSS 90
K+ G P +L + ++ + SSLFP++YFM++DF IA + + Y+GY+ SS
Sbjct: 8 FKEQMDGFPWVQLVVVSLVRFSEPIAFSSLFPYVYFMVRDFNIAPNDAQVSKYSGYLSSS 67
Query: 91 FMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNG 150
F + +++ WG ++++GRK + G + + G S NF+ A++ R L+G LNG
Sbjct: 68 FALCQVISAYHWGRFSEKHGRKITLTCGLIGTSVSLLILGFSRNFYQALVARSLMGLLNG 127
Query: 151 LLGPIKAYACEIFRE-EHQALGLSTVSTAWGIGLIIGPALGGFLA---QPAEKYPNLFS- 205
+G I+ EI E +HQAL ST+ + G ++GP +GGFL + P F
Sbjct: 128 NVGVIRTIIGEIATERKHQALAFSTMPLLFQFGAVVGPMIGGFLVFRDGTMNEVPLWFPH 187
Query: 206 -SESLFGKFPYFLPCLCISLF-AFGVTIAAFWLPETLHRHNDDDD 248
++ + +PY LP + + +F FG+T A +L ET D D
Sbjct: 188 FAKRIIRSYPYALPNVVVCMFLMFGLTNATLFLEETHPAFKDRRD 232
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Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|B4EYY4|MDTG_PROMH Multidrug resistance protein MdtG OS=Proteus mirabilis (strain HI4320) GN=mdtG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 66.2 bits (160), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 83/185 (44%), Gaps = 9/185 (4%)
Query: 42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGS-SFMFGRALTSV 100
L+ +W T S + PFL +++ I K E + + G S +F+F A+ +
Sbjct: 13 NLYIVWFGCFLTGAGFSLIMPFLPLYVEELGI-KDHESLNLWTGVAFSITFLFS-AIAAP 70
Query: 101 FWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYAC 160
FWG ++DR GRK +++ + I L G + N W ++ R LLG L G + A
Sbjct: 71 FWGKLSDRKGRKLMLLRSALGMAIVMVLIGFAQNIWQLLILRALLGVLGGFVPNANALIA 130
Query: 161 EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCL 220
+ L T+ST G +IGP +GG LA P F + ++ C
Sbjct: 131 TQVPVKKSGWALGTLSTGAVSGALIGPLIGGILADLYGLRPVFFITAAV------LFICF 184
Query: 221 CISLF 225
++LF
Sbjct: 185 IVTLF 189
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Proteus mirabilis (strain HI4320) (taxid: 529507) |
| >sp|A8GCZ5|MDTG_SERP5 Multidrug resistance protein MdtG OS=Serratia proteamaculans (strain 568) GN=mdtG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 81/185 (43%), Gaps = 9/185 (4%)
Query: 42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGS-SFMFGRALTSV 100
LF W+ T S + PFL ++ + + + ++G V S +F+F A+ S
Sbjct: 13 NLFVAWLGCFLTGAAFSLIMPFLPLYVETLGVTG-HQALNMWSGLVFSITFLFS-AIASP 70
Query: 101 FWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYAC 160
FWG +ADR GRK +++ + I L G++ N W + R +LG L G + A
Sbjct: 71 FWGGLADRRGRKLMLLRSALGMSIVMLLMGMAQNIWQFLALRAVLGLLGGFIPNANALIA 130
Query: 161 EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCL 220
L T+ST G +IGP +GG LA P + + + L C
Sbjct: 131 TQVPRNRSGWALGTLSTGGVSGALIGPLIGGLLADQYGLRPVFYITAGV------LLTCF 184
Query: 221 CISLF 225
++L
Sbjct: 185 VLTLL 189
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Serratia proteamaculans (strain 568) (taxid: 399741) |
| >sp|D8MQN9|MDTG_ERWBE Multidrug resistance protein MdtG OS=Erwinia billingiae (strain Eb661) GN=mdtG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 85/204 (41%), Gaps = 9/204 (4%)
Query: 42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGS-SFMFGRALTSV 100
LF W T + S + PFL ++ + + ++G V S +F+F A+ S
Sbjct: 16 NLFVAWCGCFLTGIAFSLVMPFLPLYVELLGVTD-PHSLNMWSGLVFSITFLFS-AIASP 73
Query: 101 FWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYAC 160
FWG +ADR GRK +++ + + L GL+ + W + R +LG L G + A
Sbjct: 74 FWGGLADRKGRKIMLLRSALGMSVVMVLMGLATSIWQFLALRAVLGLLGGFVPNANALIA 133
Query: 161 EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCL 220
L +ST G +IGP +GG LA P F + S+ C
Sbjct: 134 TQVPRNKSGWALGWLSTGAVSGALIGPLIGGLLADSFGLRPVFFITASV------LFVCF 187
Query: 221 CISLFAFGVTIAAFWLPETLHRHN 244
++LFA + LH H
Sbjct: 188 IMTLFAVREEFVPVQKKDMLHAHQ 211
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Erwinia billingiae (strain Eb661) (taxid: 634500) |
| >sp|P39843|BMR2_BACSU Multidrug resistance protein 2 OS=Bacillus subtilis (strain 168) GN=blt PE=3 SV=1 | Back alignment and function description |
|---|
Score = 62.0 bits (149), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 100/374 (26%), Positives = 162/374 (43%), Gaps = 64/374 (17%)
Query: 81 GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVL 140
GS GY+ ++F + +TS F G DR+GRK +II+G + +FGL + +
Sbjct: 44 GSTMGYLVAAFAISQLITSPFAGRWVDRFGRKKMIILGLLIFSLSELIFGLGTHVSIFYF 103
Query: 141 TRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK 199
+R L G + P + AY +I + ++ + VS A G IIGP GGF+A +
Sbjct: 104 SRILGGVSAAFIMPAVTAYVADITTLKERSKAMGYVSAAISTGFIIGPGAGGFIAGFGIR 163
Query: 200 YPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALES 259
P F+S I+L A VT + F L E+L S +
Sbjct: 164 MPFFFAS--------------AIALIA-AVT-SVFILKESL------------SIEERHQ 195
Query: 260 ASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWAN-----SPKK 314
S+ KE + K+S+ + + I+ F L AY +FSL+++ +PK
Sbjct: 196 LSSHTKESNFIKDL-KRSIHPVYFIAFIIVFVMAFGLS--AYETVFSLFSDHKFGFTPKD 252
Query: 315 LGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLE--RILGPIMV---ARIAGVLTIPLLT 369
+ + + +V V+ + F LV +L ++ I G I+ ++G LT+ L+T
Sbjct: 253 IAAIITISSIVAVVIQVLLFGKLVNKLGEKRMIQLCLITGAILAFVSTVMSGFLTVLLVT 312
Query: 370 SYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMS 429
+ ++A +LL ++ L N A +Q+G G+ T S
Sbjct: 313 CFIFLAF-----------------DLLRPALTAH---LSNMA--GNQQGFVAGMNSTYTS 350
Query: 430 LFKAAGPAGGGALF 443
L GPA GG LF
Sbjct: 351 LGNIFGPALGGILF 364
|
Energy-dependent efflux pump responsible for decreased drug accumulation in multi-drug-resistant cells. Probably uses a transmembrane proton gradient as the energy source. Causes the efflux of a variety of toxic substances, including such structurally diverse compounds as ethidium bromide, rhodamine and acridine dyes, tetraphenylphosphonium, puromycin, chloramphenicol, doxorubicin, and fluoroquinolone antibiotics. Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|P0A4K5|PMRA_STRR6 Multi-drug resistance efflux pump PmrA OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=pmrA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 6/151 (3%)
Query: 47 WIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVA 106
W T IS + PF+ +++ + ++ + YAG S AL S WG++A
Sbjct: 14 WFGNFLTGASISLVVPFMPIFVENLGVGSQQ--VAFYAGLAISVSAISAALFSPIWGILA 71
Query: 107 DRYGRKPVIIMGTASVVIFNTLFGLSV--NFWMAVLTRFLLGSLNGLLGPIKAYACEIFR 164
D+YGRKP++I ++ I T+ GL+ N + + R L G G + A
Sbjct: 72 DKYGRKPMMIRAGLAMTI--TMGGLAFVPNIYWLIFLRLLNGVFAGFVPNATALIASQVP 129
Query: 165 EEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
+E L T+ST G + GP +GGF+A+
Sbjct: 130 KEKSGSALGTLSTGVVAGTLTGPFIGGFIAE 160
|
Efflux pump for various substrates. Streptococcus pneumoniae (strain ATCC BAA-255 / R6) (taxid: 171101) |
| >sp|P0A4K4|PMRA_STRPN Multi-drug resistance efflux pump PmrA OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) GN=pmrA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 6/151 (3%)
Query: 47 WIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVA 106
W T IS + PF+ +++ + ++ + YAG S AL S WG++A
Sbjct: 14 WFGNFLTGASISLVVPFMPIFVENLGVGSQQ--VAFYAGLAISVSAISAALFSPIWGILA 71
Query: 107 DRYGRKPVIIMGTASVVIFNTLFGLSV--NFWMAVLTRFLLGSLNGLLGPIKAYACEIFR 164
D+YGRKP++I ++ I T+ GL+ N + + R L G G + A
Sbjct: 72 DKYGRKPMMIRAGLAMTI--TMGGLAFVPNIYWLIFLRLLNGVFAGFVPNATALIASQVP 129
Query: 165 EEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
+E L T+ST G + GP +GGF+A+
Sbjct: 130 KEKSGSALGTLSTGVVAGTLTGPFIGGFIAE 160
|
Efflux pump for various substrates. Streptococcus pneumoniae (taxid: 1313) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 486 | ||||||
| 224097490 | 495 | predicted protein [Populus trichocarpa] | 0.987 | 0.969 | 0.763 | 0.0 | |
| 359487104 | 1624 | PREDICTED: uncharacterized protein LOC10 | 0.983 | 0.294 | 0.717 | 0.0 | |
| 296085436 | 518 | unnamed protein product [Vitis vinifera] | 0.987 | 0.926 | 0.714 | 0.0 | |
| 225465403 | 487 | PREDICTED: protein ZINC INDUCED FACILITA | 0.983 | 0.981 | 0.738 | 0.0 | |
| 225465405 | 487 | PREDICTED: protein ZINC INDUCED FACILITA | 0.985 | 0.983 | 0.754 | 0.0 | |
| 297807399 | 479 | hypothetical protein ARALYDRAFT_488196 [ | 0.977 | 0.991 | 0.697 | 0.0 | |
| 30684565 | 478 | zinc induced facilitator-like 1 protein | 0.962 | 0.979 | 0.694 | 0.0 | |
| 359481459 | 490 | PREDICTED: protein ZINC INDUCED FACILITA | 0.979 | 0.971 | 0.681 | 0.0 | |
| 356548793 | 488 | PREDICTED: protein ZINC INDUCED FACILITA | 0.979 | 0.975 | 0.662 | 0.0 | |
| 224137524 | 465 | predicted protein [Populus trichocarpa] | 0.950 | 0.993 | 0.677 | 0.0 |
| >gi|224097490|ref|XP_002310957.1| predicted protein [Populus trichocarpa] gi|222850777|gb|EEE88324.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 750 bits (1936), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/487 (76%), Positives = 426/487 (87%), Gaps = 7/487 (1%)
Query: 6 EKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLY 65
E+ RE LK + YYENCPGCKVDQLK+ K G P +L SIWI+VLCTALPIS+LFPFLY
Sbjct: 3 EEYREALLKKDD-YYENCPGCKVDQLKELKKGFPFRDLISIWIVVLCTALPISTLFPFLY 61
Query: 66 FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF 125
FMI+DF IA+REEDIG YAGYVGSSFM GRALTSVFWG+VADRYGRKPVI++GT +VVIF
Sbjct: 62 FMIRDFGIAEREEDIGYYAGYVGSSFMIGRALTSVFWGIVADRYGRKPVILLGTIAVVIF 121
Query: 126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLII 185
NTLFGLSVNFWMA++TRFLLGSLNGLLGPIKAYA EIFR E+QALGLSTVSTAWG+GLII
Sbjct: 122 NTLFGLSVNFWMAIITRFLLGSLNGLLGPIKAYAVEIFRAEYQALGLSTVSTAWGLGLII 181
Query: 186 GPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHND 245
GPALGGFLAQPAEKYPNLFS ESLFG+FPYFLPC CISLFA VTI + WLPETLH HN+
Sbjct: 182 GPALGGFLAQPAEKYPNLFSKESLFGRFPYFLPCFCISLFALVVTIVSCWLPETLHVHNE 241
Query: 246 DDDSCDVSYDALESASAEVK------EEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDM 299
S + SYDALE+A+ K +++GR+ + +SLLKNWPLMSSIIVYC+FSLHDM
Sbjct: 242 KKTSSNDSYDALEAATGASKGDETRTDDKGRKPSSNESLLKNWPLMSSIIVYCIFSLHDM 301
Query: 300 AYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARI 359
AY+EIFSLWA S +KLGGL Y+T+ VGEVLAI+GFSLLVFQLSLYPF+ERILGPI VA+I
Sbjct: 302 AYTEIFSLWAESSRKLGGLGYTTEDVGEVLAISGFSLLVFQLSLYPFVERILGPIPVAQI 361
Query: 360 AGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGA 419
A L+I LL+SYP+IAMLSG GL+ L+NCAS++KN+ SVSI+TG+FILQN AVDQ+QRGA
Sbjct: 362 AAALSILLLSSYPFIAMLSGLGLSILINCASIMKNVFSVSIVTGMFILQNNAVDQNQRGA 421
Query: 420 ANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKP 479
ANGI+MTGMSLFKA GPAGGGA+ SWAQ+R +A+FLPG QMVFF+LN VE IG+LMTFKP
Sbjct: 422 ANGISMTGMSLFKAVGPAGGGAILSWAQRRQNAAFLPGVQMVFFILNAVELIGLLMTFKP 481
Query: 480 FLAQRHD 486
FLAQR D
Sbjct: 482 FLAQRQD 488
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359487104|ref|XP_002274088.2| PREDICTED: uncharacterized protein LOC100259102 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 727 bits (1877), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/485 (71%), Positives = 410/485 (84%), Gaps = 7/485 (1%)
Query: 5 EEKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFL 64
EE+ RE LK K Y+E CPGC+V+ LKDT+ GLP+ +LF +WI+VLC ALPISSLFP+L
Sbjct: 1140 EEEQREVLLK--KVYHEGCPGCRVEHLKDTQRGLPVRQLFFVWIVVLCNALPISSLFPYL 1197
Query: 65 YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI 124
YFMI+DF IAK E+DIG YAGY G+S+MFGRALTS+ WG+VADRYGRKPVI++GTASVVI
Sbjct: 1198 YFMIRDFNIAKTEKDIGYYAGYAGASYMFGRALTSILWGMVADRYGRKPVILVGTASVVI 1257
Query: 125 FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLI 184
FNTLFGLS+N+WMA+ +RFLLGS++ LLGPI AYA EIFREE+QALGLST++TAWG+GLI
Sbjct: 1258 FNTLFGLSLNYWMAISSRFLLGSMSTLLGPIMAYATEIFREEYQALGLSTINTAWGVGLI 1317
Query: 185 IGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHN 244
IGPALGGFLAQPAEKYPN+FS ES+FG+FPYFLPCLC S++AFG+TIA WL ETLH HN
Sbjct: 1318 IGPALGGFLAQPAEKYPNIFSKESIFGRFPYFLPCLCTSVYAFGITIACCWLQETLHTHN 1377
Query: 245 DDDDSCDVSYDALE-----SASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDM 299
+++ SY+ALE +A V E E + T K+SL+KNWPLMSSIIV+CVFSLHDM
Sbjct: 1378 ENNKLSKNSYNALEAPCGFNAEEAVNEIEANKPTSKESLIKNWPLMSSIIVFCVFSLHDM 1437
Query: 300 AYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARI 359
AYSEIFSLWA SP+K GGL+YST VG VLAI+GF +LVFQL LYP+LE++LGPI++ RI
Sbjct: 1438 AYSEIFSLWAVSPRKYGGLSYSTDDVGVVLAISGFGVLVFQLFLYPYLEKLLGPIIICRI 1497
Query: 360 AGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGA 419
AGVL+IPLL YP IAMLSGF L+ LNCAS +KN+LSVSI T L ILQNRAV+Q QRGA
Sbjct: 1498 AGVLSIPLLAIYPLIAMLSGFNLSLALNCASAMKNVLSVSIGTSLIILQNRAVEQHQRGA 1557
Query: 420 ANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKP 479
ANGI MT MSLFKAAGPAGGG +FSWAQ R A+F PG QM+FF+LNVVEAI VLMTFKP
Sbjct: 1558 ANGITMTTMSLFKAAGPAGGGVIFSWAQGRQRAAFFPGDQMIFFILNVVEAIAVLMTFKP 1617
Query: 480 FLAQR 484
FL +R
Sbjct: 1618 FLVRR 1622
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296085436|emb|CBI29168.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 724 bits (1869), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/487 (71%), Positives = 410/487 (84%), Gaps = 7/487 (1%)
Query: 5 EEKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFL 64
EE+ RE LK K Y+E CPGC+V+ LKDT+ GLP+ +LF +WI+VLC ALPISSLFP+L
Sbjct: 34 EEEQREVLLK--KVYHEGCPGCRVEHLKDTQRGLPVRQLFFVWIVVLCNALPISSLFPYL 91
Query: 65 YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI 124
YFMI+DF IAK E+DIG YAGY G+S+MFGRALTS+ WG+VADRYGRKPVI++GTASVVI
Sbjct: 92 YFMIRDFNIAKTEKDIGYYAGYAGASYMFGRALTSILWGMVADRYGRKPVILVGTASVVI 151
Query: 125 FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLI 184
FNTLFGLS+N+WMA+ +RFLLGS++ LLGPI AYA EIFREE+QALGLST++TAWG+GLI
Sbjct: 152 FNTLFGLSLNYWMAISSRFLLGSMSTLLGPIMAYATEIFREEYQALGLSTINTAWGVGLI 211
Query: 185 IGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHN 244
IGPALGGFLAQPAEKYPN+FS ES+FG+FPYFLPCLC S++AFG+TIA WL ETLH HN
Sbjct: 212 IGPALGGFLAQPAEKYPNIFSKESIFGRFPYFLPCLCTSVYAFGITIACCWLQETLHTHN 271
Query: 245 DDDDSCDVSYDALES-----ASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDM 299
+++ SY+ALE+ A V E E + T K+SL+KNWPLMSSIIV+CVFSLHDM
Sbjct: 272 ENNKLSKNSYNALEAPCGFNAEEAVNEIEANKPTSKESLIKNWPLMSSIIVFCVFSLHDM 331
Query: 300 AYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARI 359
AYSEIFSLWA SP+K GGL+YST VG VLAI+GF +LVFQL LYP+LE++LGPI++ RI
Sbjct: 332 AYSEIFSLWAVSPRKYGGLSYSTDDVGVVLAISGFGVLVFQLFLYPYLEKLLGPIIICRI 391
Query: 360 AGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGA 419
AGVL+IPLL YP IAMLSGF L+ LNCAS +KN+LSVSI T L ILQNRAV+Q QRGA
Sbjct: 392 AGVLSIPLLAIYPLIAMLSGFNLSLALNCASAMKNVLSVSIGTSLIILQNRAVEQHQRGA 451
Query: 420 ANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKP 479
ANGI MT MSLFKAAGPAGGG +FSWAQ R A+F PG QM+FF+LNVVEAI VLMTFKP
Sbjct: 452 ANGITMTTMSLFKAAGPAGGGVIFSWAQGRQRAAFFPGDQMIFFILNVVEAIAVLMTFKP 511
Query: 480 FLAQRHD 486
FL +R
Sbjct: 512 FLVRRSQ 518
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225465403|ref|XP_002277598.1| PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1 [Vitis vinifera] gi|296085440|emb|CBI29172.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/486 (73%), Positives = 414/486 (85%), Gaps = 8/486 (1%)
Query: 6 EKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLY 65
E+ + P LK K YY+NC GC+V+QLK+T+ GLPI EL SIW +VLCTALPISSLFPFLY
Sbjct: 3 EEQQVPLLK--KVYYQNCSGCRVEQLKETRRGLPIRELVSIWSVVLCTALPISSLFPFLY 60
Query: 66 FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF 125
FMI+DF IAKREEDIG YAGYVGS+FM GRALTSV WG+VADRYGRKPVI++GT +VVIF
Sbjct: 61 FMIRDFHIAKREEDIGYYAGYVGSAFMLGRALTSVAWGMVADRYGRKPVIMIGTITVVIF 120
Query: 126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLII 185
NTLFGLSVNFWMA+ TRFLLGSLNG+LGPIKAYA EIFR+E+QALGLSTVSTA GIGLII
Sbjct: 121 NTLFGLSVNFWMALSTRFLLGSLNGVLGPIKAYAAEIFRDEYQALGLSTVSTARGIGLII 180
Query: 186 GPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHND 245
GPALGGFLAQPAEKYP++FS +SLFG+FPYFLPCL IS++A +T+A WLPETLH HN+
Sbjct: 181 GPALGGFLAQPAEKYPDIFSEDSLFGRFPYFLPCLFISVYAMIITVACCWLPETLHTHNE 240
Query: 246 DDDSCDVSYDALESA----SAEVKEE--EGREATPKKSLLKNWPLMSSIIVYCVFSLHDM 299
+ S + SYDALE A +A+ KE+ EG E T +SL NWPLMSSII+YCVFSLHD+
Sbjct: 241 NKKSREDSYDALEGANGGSNAKEKEQEIEGSEPTSNESLFMNWPLMSSIIIYCVFSLHDI 300
Query: 300 AYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARI 359
AY EIFSLWA SP+ GGL+YST VG VLAI+GF L V Q++LYP +ER LGP+M+ RI
Sbjct: 301 AYIEIFSLWAVSPRIHGGLSYSTDDVGVVLAISGFGLFVSQVTLYPLVERFLGPVMICRI 360
Query: 360 AGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGA 419
AGVL+IPLL SYP IAMLSG L+ +LNCASV+KN+LSVSIITG+F+LQN AVDQ QRG
Sbjct: 361 AGVLSIPLLASYPLIAMLSGSTLSVVLNCASVLKNVLSVSIITGMFLLQNSAVDQHQRGT 420
Query: 420 ANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKP 479
ANGI+MT MSLFKAAGPAGGGALFSWAQKR D++F PG QMVF +LNVVEAIG+LMTFKP
Sbjct: 421 ANGISMTAMSLFKAAGPAGGGALFSWAQKRQDSAFFPGDQMVFLILNVVEAIGLLMTFKP 480
Query: 480 FLAQRH 485
FL QR
Sbjct: 481 FLVQRR 486
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225465405|ref|XP_002277751.1| PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1 [Vitis vinifera] gi|296085442|emb|CBI29174.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 703 bits (1815), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/489 (75%), Positives = 420/489 (85%), Gaps = 10/489 (2%)
Query: 3 AGEEKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFP 62
A E+++ P LK K YY+NC GC+V+QLK+T+ GLPI EL SIW +VLCTALPISSLFP
Sbjct: 2 AAEQQV--PLLK--KVYYQNCSGCRVEQLKETRRGLPIRELLSIWTVVLCTALPISSLFP 57
Query: 63 FLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV 122
FLYFMI+DF IAKREEDIG YAGYVGS+FM GRALTSV WG+VADRYGRKPVI++GT +V
Sbjct: 58 FLYFMIRDFHIAKREEDIGYYAGYVGSAFMLGRALTSVAWGMVADRYGRKPVIMIGTIAV 117
Query: 123 VIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIG 182
VIFNTLFGLSVNFWMA+ TRFLLGSLNGLLGPIKAYA EIFR+E+QALGLSTVSTAWGIG
Sbjct: 118 VIFNTLFGLSVNFWMALSTRFLLGSLNGLLGPIKAYAAEIFRDEYQALGLSTVSTAWGIG 177
Query: 183 LIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHR 242
LIIGPALGGFLAQPAEKYP++FS +SLFG+FPYFLPCL IS++A VT+A WLPETLH
Sbjct: 178 LIIGPALGGFLAQPAEKYPDIFSEDSLFGRFPYFLPCLFISVYAMIVTVACCWLPETLHT 237
Query: 243 HNDDDDSCDVSYDALESA----SAEVKEE--EGREATPKKSLLKNWPLMSSIIVYCVFSL 296
HN++ S + SYDALE+A +A+ KE+ EG E T +SL NWPLMSSIIVYCVFSL
Sbjct: 238 HNENKKSREDSYDALEAANGGSNAKEKEQEIEGSEPTSNESLFMNWPLMSSIIVYCVFSL 297
Query: 297 HDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMV 356
HDMAY+EIFSLWA SP+ GGL+YST VG VLAI+GF LLV QL+LYP +ER LGP+M+
Sbjct: 298 HDMAYTEIFSLWAVSPRIHGGLSYSTDDVGVVLAISGFGLLVSQLTLYPLVERFLGPVMI 357
Query: 357 ARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQ 416
RIAGVL+IPLL SYP IAMLSG L+ +LNCASV+KN+LSVSIITGLF+LQN AVDQ Q
Sbjct: 358 CRIAGVLSIPLLASYPLIAMLSGSSLSVVLNCASVLKNVLSVSIITGLFLLQNSAVDQHQ 417
Query: 417 RGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMT 476
RG ANGI+MT MSLFKAAGPAGGGALFSWAQKR D++F PG QMVF +LNVVEAIGVLMT
Sbjct: 418 RGTANGISMTAMSLFKAAGPAGGGALFSWAQKRQDSAFFPGDQMVFLILNVVEAIGVLMT 477
Query: 477 FKPFLAQRH 485
FKPFL QR
Sbjct: 478 FKPFLVQRR 486
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297807399|ref|XP_002871583.1| hypothetical protein ARALYDRAFT_488196 [Arabidopsis lyrata subsp. lyrata] gi|297317420|gb|EFH47842.1| hypothetical protein ARALYDRAFT_488196 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/483 (69%), Positives = 395/483 (81%), Gaps = 8/483 (1%)
Query: 6 EKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLY 65
E+ E L+N +++E+CPGCKVDQ+K + G P+ ELF++WIIVLCTALPISSLFPFLY
Sbjct: 3 EEYTECLLEN--KFHEDCPGCKVDQMKRLRRGFPLWELFTVWIIVLCTALPISSLFPFLY 60
Query: 66 FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF 125
FMI DF IAK+EEDIG YAG+VG SFM GRA TSV WGLVADRYGRKPVI++GTASVV+F
Sbjct: 61 FMIDDFNIAKKEEDIGFYAGFVGCSFMLGRAFTSVIWGLVADRYGRKPVILIGTASVVVF 120
Query: 126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLII 185
NTLFGLS+NFWMA++TRF LGS NGLLGPIKAYA EIFR+E+Q L LS VSTAWGIGLII
Sbjct: 121 NTLFGLSLNFWMAIITRFCLGSFNGLLGPIKAYAMEIFRDEYQGLALSAVSTAWGIGLII 180
Query: 186 GPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHN- 244
GPA+GGFLAQPA +YP+LFS +S+FGKFP+FLPC IS+FAF VTI + W+PETLH H
Sbjct: 181 GPAIGGFLAQPATQYPSLFSQDSIFGKFPFFLPCFAISVFAFLVTIISLWIPETLHNHKY 240
Query: 245 -DDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSE 303
DDDD S+DAL+ S + + + E K SLL NWPL+SSIIVYCVFSLHDMAY+E
Sbjct: 241 VDDDD----SFDALKYLSHDPESNKVVERNEKSSLLNNWPLISSIIVYCVFSLHDMAYTE 296
Query: 304 IFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVL 363
IFSLWANSP+K GGL YST VG VLAI+GF LL+FQLSLY + ER+LGPI+V RI+G+L
Sbjct: 297 IFSLWANSPRKYGGLGYSTADVGSVLAISGFGLLIFQLSLYSYAERLLGPIIVTRISGIL 356
Query: 364 TIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGI 423
+ +L+ YP IA LSG L +N ASV KN+LS S ITGLFILQN AV QDQRGAANGI
Sbjct: 357 AMVILSCYPLIAKLSGLALTLAVNSASVAKNVLSTSAITGLFILQNNAVRQDQRGAANGI 416
Query: 424 AMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQ 483
AMT MSLFKA GPA G +FSW++KR DA+F PG+QMVFF+LNVV A+GVLMTFKPFLA+
Sbjct: 417 AMTAMSLFKAIGPAAAGIIFSWSEKRQDAAFFPGTQMVFFILNVVLALGVLMTFKPFLAE 476
Query: 484 RHD 486
Sbjct: 477 TQQ 479
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30684565|ref|NP_851036.1| zinc induced facilitator-like 1 protein [Arabidopsis thaliana] gi|75249957|sp|Q94BZ1.1|ZIFL1_ARATH RecName: Full=Protein ZINC INDUCED FACILITATOR-LIKE 1; AltName: Full=Protein ZIF-LIKE 1 gi|14517414|gb|AAK62597.1| AT5g13750/MXE10_2 [Arabidopsis thaliana] gi|17065582|gb|AAL32945.1| transporter-like protein [Arabidopsis thaliana] gi|20857393|gb|AAM26717.1| AT5g13750/MXE10_2 [Arabidopsis thaliana] gi|332004552|gb|AED91935.1| zinc induced facilitator-like 1 protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/471 (69%), Positives = 385/471 (81%), Gaps = 3/471 (0%)
Query: 16 EKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAK 75
EK ++E+C GCKVDQ+K + G P ELF++WIIVLCTALPISSLFPFLYFMI DF IAK
Sbjct: 11 EKNFHEDCSGCKVDQMKRLRRGFPFWELFTVWIIVLCTALPISSLFPFLYFMIDDFNIAK 70
Query: 76 REEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF 135
+EEDIG YAG+VG SFM GRA TSV WGLVADRYGRKPVI++GTASVV+FNTLFGLS+NF
Sbjct: 71 KEEDIGFYAGFVGCSFMLGRAFTSVAWGLVADRYGRKPVILIGTASVVVFNTLFGLSLNF 130
Query: 136 WMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
WMA++TRF LGS NGLLGPIKAYA EIFR+E+Q L LS VSTAWGIGLIIGPA+GGFLAQ
Sbjct: 131 WMAIITRFCLGSFNGLLGPIKAYAMEIFRDEYQGLALSAVSTAWGIGLIIGPAIGGFLAQ 190
Query: 196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYD 255
PA++YP+LFS +S+FGKFP+FLPCL IS+FAF VTI + +PETLH H +DD SYD
Sbjct: 191 PAKQYPSLFSQDSIFGKFPFFLPCLAISVFAFLVTIVSSRIPETLHNHKFNDDE---SYD 247
Query: 256 ALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKL 315
AL+ S + + + E K SLL NWPL+SSIIVYCVFSLHDMAY+EIFSLWANSP+K
Sbjct: 248 ALKDLSDDPESNKVAERNGKSSLLNNWPLISSIIVYCVFSLHDMAYTEIFSLWANSPRKY 307
Query: 316 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIA 375
GGL YST VG VLA +GF LL+FQLSLY + ER+LGPI+V RI+G L + +L+ YP IA
Sbjct: 308 GGLGYSTADVGSVLAFSGFGLLIFQLSLYSYAERLLGPIIVTRISGSLAMVVLSCYPLIA 367
Query: 376 MLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAG 435
LSG L + ASV K++L S ITGLFILQN+AV QDQRGAANGIAMT MSLFKA G
Sbjct: 368 KLSGLALTVTVTSASVAKSVLGTSAITGLFILQNKAVRQDQRGAANGIAMTAMSLFKAIG 427
Query: 436 PAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQRHD 486
PA G +FSW++KR A+FLPG+QMVFF+LNVV A+GV++TFKPFLA+
Sbjct: 428 PAAAGIIFSWSEKRQGAAFLPGTQMVFFILNVVLALGVVLTFKPFLAETQQ 478
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359481459|ref|XP_003632620.1| PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1-like [Vitis vinifera] gi|297741718|emb|CBI32850.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/481 (68%), Positives = 395/481 (82%), Gaps = 5/481 (1%)
Query: 7 KLREPFLKNEK-RYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLY 65
K RE LK E Y E+CPGCK+D LK++ G+P LF +WI+VLC ALPISSLFPFLY
Sbjct: 3 KNREALLKKEVWEYDESCPGCKIDHLKESNPGIPFKLLFYVWIVVLCAALPISSLFPFLY 62
Query: 66 FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF 125
FMI+DF IAKREEDIG YAGYVGSSFMFGRALTSV WG+VADRYGRKPVI G +++IF
Sbjct: 63 FMIRDFHIAKREEDIGFYAGYVGSSFMFGRALTSVIWGMVADRYGRKPVITAGLIALIIF 122
Query: 126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLII 185
NTLFGLS N WMA+ TRFLLGS G+LGP++AYA E+ R+E+QALG+S +STAWGIGL+I
Sbjct: 123 NTLFGLSTNVWMALSTRFLLGSFCGILGPMRAYASEVCRKEYQALGMSIISTAWGIGLVI 182
Query: 186 GPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHND 245
GPALGGFLAQPAEK+P++FS ESLFG+FPYFLPCL IS FA GV++ +WLPETLH H +
Sbjct: 183 GPALGGFLAQPAEKFPHIFSKESLFGRFPYFLPCLLISTFALGVSVLCYWLPETLHIHKE 242
Query: 246 DDDSCDVSYDALESASAEVKEE----EGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAY 301
+ + ++ + + +VKE+ EG+ ++SLLKNWPLMSSIIVYCVF LHDMAY
Sbjct: 243 NKEQDELYAWEVAAYGCDVKEKLKKFEGKGPNQQQSLLKNWPLMSSIIVYCVFQLHDMAY 302
Query: 302 SEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG 361
+EIFSLWA SP + GGL+YST VGEVLA++G LL+FQL LYP LERILGP+MV+RI
Sbjct: 303 AEIFSLWAISPSEYGGLSYSTADVGEVLAMSGLGLLLFQLFLYPPLERILGPVMVSRIGA 362
Query: 362 VLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAAN 421
VLT+PLL+SYP IAMLSG GL+ L+NCAS++KN+L VSI TGLF+LQNRAV Q QRGAAN
Sbjct: 363 VLTVPLLSSYPLIAMLSGVGLSLLINCASLLKNVLCVSITTGLFLLQNRAVTQQQRGAAN 422
Query: 422 GIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFL 481
GI+M+ MS FKA GPAGGG+LFSWA KR + SFLPGS+MVFF+LN++E +G+ MTFKPFL
Sbjct: 423 GISMSAMSFFKAVGPAGGGSLFSWALKRQNDSFLPGSRMVFFILNIIEVLGLFMTFKPFL 482
Query: 482 A 482
Sbjct: 483 T 483
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356548793|ref|XP_003542784.1| PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/483 (66%), Positives = 399/483 (82%), Gaps = 7/483 (1%)
Query: 4 GEEKLREPFLKNEKRYYENCPGCKVDQLKDTK--SGLPITELFSIWIIVLCTALPISSLF 61
GEE +++P L E++YY++CPGCKVDQ K+ G+P+ LF +W++VLC ALPISSLF
Sbjct: 2 GEENVKQPLL--ERKYYKDCPGCKVDQAKELSEGKGVPVKNLFIMWMVVLCAALPISSLF 59
Query: 62 PFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS 121
PFLYFM++DF IAK E DI SYAGYVGSSFM GR LTSV WG+VADRYGRKPVI+MG +
Sbjct: 60 PFLYFMVRDFNIAKTEADISSYAGYVGSSFMLGRCLTSVLWGIVADRYGRKPVIVMGIIA 119
Query: 122 VVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGI 181
VVIFNTLFGLS NFWMAV+ RFLLGSLNGLLGP+KAYA E+FREEHQA+GLSTVS AWGI
Sbjct: 120 VVIFNTLFGLSTNFWMAVIMRFLLGSLNGLLGPVKAYASELFREEHQAIGLSTVSAAWGI 179
Query: 182 GLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLH 241
GLIIGPALGG+LAQP EKYP++F+ +S + KFPYFLP L IS FAF V I W+PETLH
Sbjct: 180 GLIIGPALGGYLAQPVEKYPHIFTKDSFWDKFPYFLPNLIISAFAFVVAIGCIWIPETLH 239
Query: 242 RHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAY 301
HN ++S D ALES ++ E + +LL NWPLMSSIIVYCVFSLHD+AY
Sbjct: 240 NHNCSNESTD-DAKALESGNSGAGNE--KIIQKNDNLLLNWPLMSSIIVYCVFSLHDIAY 296
Query: 302 SEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG 361
E+FSLWA SP++LGGLN++T VG+VL+I+G +L+++QL+LYPF+E+ GPI++AR +G
Sbjct: 297 QEVFSLWAVSPQRLGGLNFTTDNVGDVLSISGLALIIYQLTLYPFVEKASGPIVIARFSG 356
Query: 362 VLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAAN 421
+LTIPLL SYP+IA+LSG L +++ AS++KN++S++IIT LF+LQNRAV+Q QRGAAN
Sbjct: 357 MLTIPLLQSYPFIALLSGLALYIVISIASILKNIMSITIITSLFLLQNRAVEQHQRGAAN 416
Query: 422 GIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFL 481
GI+MT MSLFKA GPA GGA+ +W+QKR+DASFLPG+ MVFFVLN+VEA+G+LM FKPFL
Sbjct: 417 GISMTAMSLFKAIGPATGGAVLTWSQKRMDASFLPGTHMVFFVLNIVEALGILMMFKPFL 476
Query: 482 AQR 484
++
Sbjct: 477 VEK 479
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224137524|ref|XP_002322579.1| predicted protein [Populus trichocarpa] gi|222867209|gb|EEF04340.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/471 (67%), Positives = 387/471 (82%), Gaps = 9/471 (1%)
Query: 13 LKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQ 72
L + +YYE+CPGCK++ K+T +G+P L +WI+VLC ALPISSLFPFLYFMI+DF
Sbjct: 3 LLRKNKYYEDCPGCKIELSKETNTGVPFKYLLYVWIVVLCAALPISSLFPFLYFMIRDFH 62
Query: 73 IAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS 132
IAKREEDIG YAGYVGS+FMFGRALTSV WG++ADRYGRKPVII GT SVVIFNTLFGLS
Sbjct: 63 IAKREEDIGYYAGYVGSAFMFGRALTSVLWGMIADRYGRKPVIIFGTVSVVIFNTLFGLS 122
Query: 133 VNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGF 192
+FWMA+ TRFLLGSL G+LGP++AYA E+ R+E+QALG+S +ST+WGIGL+IGPALGGF
Sbjct: 123 TSFWMAISTRFLLGSLCGILGPMRAYASEVCRKEYQALGMSIISTSWGIGLVIGPALGGF 182
Query: 193 LAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDV 252
LAQPAEK+PN+FSS+SLFG+FPY LPCL IS+F+ GV + LPET+H H +D+ C+
Sbjct: 183 LAQPAEKFPNIFSSDSLFGRFPYLLPCLLISIFSVGVLVVCCLLPETIHNHKGNDEECND 242
Query: 253 SYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSP 312
S DAL + + E + KSLLKNWPL+SSIIVYCVF LHDMAY+EIFSLWA SP
Sbjct: 243 S-DALGATTFESNSSQ-------KSLLKNWPLISSIIVYCVFQLHDMAYAEIFSLWAVSP 294
Query: 313 KKLGGLNYSTQMVGEVLAITG-FSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSY 371
+K GGL++ST VGEVLA +G F LL+FQL +YP ER GP+MV+R+ VLTIPLL+SY
Sbjct: 295 RKNGGLSFSTADVGEVLAFSGSFGLLLFQLFIYPVAERNFGPVMVSRLGAVLTIPLLSSY 354
Query: 372 PYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLF 431
P+IA+L G L L+NCAS++KN+LSVSI TGLF+LQNR+V Q QRGAANGI+M+ MSLF
Sbjct: 355 PFIALLKGLTLMLLINCASILKNVLSVSITTGLFLLQNRSVAQQQRGAANGISMSAMSLF 414
Query: 432 KAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLA 482
KA GPA GG+LFSWAQKR A FLPG Q+VFF LN++E IG+ +TFKPFLA
Sbjct: 415 KAIGPAAGGSLFSWAQKRQSAFFLPGDQIVFFFLNMIEVIGLFLTFKPFLA 465
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 486 | ||||||
| TAIR|locus:2177105 | 478 | ZIFL1 "zinc induced facilitato | 0.956 | 0.972 | 0.653 | 2.7e-162 | |
| TAIR|locus:2173254 | 486 | ZIF1 "zinc induced facilitator | 0.977 | 0.977 | 0.610 | 1e-155 | |
| TAIR|locus:2101109 | 484 | ZIFL2 "AT3G43790" [Arabidopsis | 0.950 | 0.954 | 0.577 | 1.4e-142 | |
| ASPGD|ASPL0000053890 | 591 | AN0890 [Emericella nidulans (t | 0.419 | 0.345 | 0.344 | 4.1e-45 | |
| DICTYBASE|DDB_G0269964 | 665 | DDB_G0269964 "Uncharacterized | 0.430 | 0.314 | 0.309 | 5.4e-34 | |
| CGD|CAL0004954 | 546 | orf19.3432 [Candida albicans ( | 0.296 | 0.263 | 0.386 | 8.7e-31 | |
| CGD|CAL0002781 | 633 | orf19.4550 [Candida albicans ( | 0.296 | 0.227 | 0.379 | 4.3e-30 | |
| ASPGD|ASPL0000051539 | 480 | AN1423 [Emericella nidulans (t | 0.318 | 0.322 | 0.354 | 7.2e-30 | |
| DICTYBASE|DDB_G0282945 | 669 | DDB_G0282945 [Dictyostelium di | 0.434 | 0.315 | 0.297 | 9.6e-29 | |
| ASPGD|ASPL0000011265 | 530 | AN4019 [Emericella nidulans (t | 0.415 | 0.381 | 0.276 | 2.6e-28 |
| TAIR|locus:2177105 ZIFL1 "zinc induced facilitator-like 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1580 (561.2 bits), Expect = 2.7e-162, P = 2.7e-162
Identities = 306/468 (65%), Positives = 362/468 (77%)
Query: 16 EKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAK 75
EK ++E+C GCKVDQ+K + G P ELF++WIIVLCTALPISSLFPFLYFMI DF IAK
Sbjct: 11 EKNFHEDCSGCKVDQMKRLRRGFPFWELFTVWIIVLCTALPISSLFPFLYFMIDDFNIAK 70
Query: 76 REEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF 135
+EEDIG YAG+VG SFM GRA TSV WGLVADRYGRKPVI++GTASVV+FNTLFGLS+NF
Sbjct: 71 KEEDIGFYAGFVGCSFMLGRAFTSVAWGLVADRYGRKPVILIGTASVVVFNTLFGLSLNF 130
Query: 136 WMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTXXXXXXXXXXXXXXXXXQ 195
WMA++TRF LGS NGLLGPIKAYA EIFR+E+Q L LS VST Q
Sbjct: 131 WMAIITRFCLGSFNGLLGPIKAYAMEIFRDEYQGLALSAVSTAWGIGLIIGPAIGGFLAQ 190
Query: 196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNXXXXXXXXXXX 255
PA++YP+LFS +S+FGKFP+FLPCL IS+FAF VTI + +PETLH H
Sbjct: 191 PAKQYPSLFSQDSIFGKFPFFLPCLAISVFAFLVTIVSSRIPETLHNHKFNDDESYD--- 247
Query: 256 ALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKL 315
AL+ S + + + E K SLL NWPL+SSIIVYCVFSLHDMAY+EIFSLWANSP+K
Sbjct: 248 ALKDLSDDPESNKVAERNGKSSLLNNWPLISSIIVYCVFSLHDMAYTEIFSLWANSPRKY 307
Query: 316 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIA 375
GGL YST VG VLA +GF LL+FQLSLY + ER+LGPI+V RI+G L + +L+ YP IA
Sbjct: 308 GGLGYSTADVGSVLAFSGFGLLIFQLSLYSYAERLLGPIIVTRISGSLAMVVLSCYPLIA 367
Query: 376 MLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAG 435
LSG L + ASV K++L S ITGLFILQN+AV QDQRGAANGIAMT MSLFKA G
Sbjct: 368 KLSGLALTVTVTSASVAKSVLGTSAITGLFILQNKAVRQDQRGAANGIAMTAMSLFKAIG 427
Query: 436 PAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQ 483
PA G +FSW++KR A+FLPG+QMVFF+LNVV A+GV++TFKPFLA+
Sbjct: 428 PAAAGIIFSWSEKRQGAAFLPGTQMVFFILNVVLALGVVLTFKPFLAE 475
|
|
| TAIR|locus:2173254 ZIF1 "zinc induced facilitator 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1518 (539.4 bits), Expect = 1.0e-155, P = 1.0e-155
Identities = 293/480 (61%), Positives = 354/480 (73%)
Query: 6 EKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLY 65
E+ +E L+ + Y++ CPGCKV+Q+K + G P EL +WIIVL T+LPISSL+PFLY
Sbjct: 3 EEYKEALLEKQN-YHDGCPGCKVEQMKQLRRGYPYLELSFVWIIVLSTSLPISSLYPFLY 61
Query: 66 FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF 125
+MI+DF +AK E+DIG YAG+VG SFM GRALTSVFWG+VADRYGRKP+I++GT S+ IF
Sbjct: 62 YMIEDFGVAKTEKDIGFYAGFVGCSFMLGRALTSVFWGIVADRYGRKPIILLGTISIAIF 121
Query: 126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTXXXXXXXX 185
N LFGLS NFWMA+ TRFLLGS N LLG +KAYA EIFR+E+QA +S VST
Sbjct: 122 NALFGLSSNFWMAIGTRFLLGSFNCLLGTMKAYASEIFRDEYQATAMSAVSTAWGIGLII 181
Query: 186 XXXXXXXXXQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNX 245
QPA+KYPN+FS ESLFG+F Y LPC IS FA VT+ ++PETLH H
Sbjct: 182 GPALGGFLAQPADKYPNVFSQESLFGRFRYALPCFTISAFALLVTVLCCFIPETLHNHKL 241
Query: 246 XXXXXXXXXXALESASAEVKEEEGR----EATPKKSLLKNWPLMSSIIVYCVFSLHDMAY 301
LE+AS E G+ E +SLLKNWPLMSSIIVYCV LHD AY
Sbjct: 242 DSLSHDDSYDILEAASHESSPSTGKAGKNERKASQSLLKNWPLMSSIIVYCVLCLHDTAY 301
Query: 302 SEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG 361
SEIF+LWANSP+K GGL+YST VG VLAI+G L FQ+ +YP E++LGP++V R AG
Sbjct: 302 SEIFALWANSPRKYGGLSYSTNEVGTVLAISGLGLFSFQVFVYPLAEKLLGPVLVTRYAG 361
Query: 362 VLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAAN 421
L IP+ SYP+IA LSG L+ +LNCAS++ N+LSVS ITGL ILQNRAVDQ QRGAAN
Sbjct: 362 ALMIPIQMSYPFIAGLSGLSLSLMLNCASILINVLSVSAITGLLILQNRAVDQSQRGAAN 421
Query: 422 GIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFL 481
GIAMT MSLFK GPAG G LFSW+++RL+A+FLPGS MVFFVLNV+ +GV +TFKPFL
Sbjct: 422 GIAMTAMSLFKTVGPAGAGILFSWSERRLNAAFLPGSHMVFFVLNVIVVVGVALTFKPFL 481
|
|
| TAIR|locus:2101109 ZIFL2 "AT3G43790" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1394 (495.8 bits), Expect = 1.4e-142, P = 1.4e-142
Identities = 271/469 (57%), Positives = 347/469 (73%)
Query: 21 ENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDI 80
E+CPGC +D+ K + G+P L IW++ LCTALPISSLFP++YFMI+DF IAK+EEDI
Sbjct: 15 EDCPGCIIDRTKQQQRGVPYLHLSFIWLVSLCTALPISSLFPYIYFMIRDFHIAKQEEDI 74
Query: 81 GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVL 140
G YAG+VGSSFM GRALTS+FWG +ADRYGRKP+I++GT SV+IFNTLFGLS +FW+A+
Sbjct: 75 GFYAGFVGSSFMIGRALTSIFWGKLADRYGRKPIILIGTFSVIIFNTLFGLSTSFWLAIS 134
Query: 141 TRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTXXXXXXXXXXXXXXXXXQPAEKY 200
RFLLG N LLG I+AYA E+ EE+ AL LS VST QPAEKY
Sbjct: 135 VRFLLGCFNCLLGVIRAYASEVVSEEYNALSLSVVSTSRGIGLILGPAIGGYLAQPAEKY 194
Query: 201 PNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNXXXXXXXXXXXALESA 260
PN+FS S+FG+FPYFLP L IS++A V IA +WLPETLH +
Sbjct: 195 PNIFSQSSVFGRFPYFLPSLVISVYATAVLIACWWLPETLHTRCRIAQGRLNPTELNDDE 254
Query: 261 SAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNY 320
S +E ++ K SLL+N PLM+ IIVYCVFSL ++AY+EIFSLWA S + GGL++
Sbjct: 255 SRGGGLDE-QKIINKPSLLRNRPLMAIIIVYCVFSLQEIAYNEIFSLWAVSDRSYGGLSF 313
Query: 321 STQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGF 380
S+Q VGEVLAI+G LLVFQL +YP LE+ +G + V R++ VL IPLL+ YPYIA+LSG
Sbjct: 314 SSQDVGEVLAISGLGLLVFQLLVYPPLEKSVGLLAVIRLSAVLLIPLLSCYPYIALLSGV 373
Query: 381 GLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGG 440
L ++NCAS++KN LS+S++TGLFI+ N+AV Q+QRGAANGI+MT MS+FK+ GPAGGG
Sbjct: 374 TLHLVINCASIIKNALSISLVTGLFIMLNKAVPQNQRGAANGISMTAMSVFKSFGPAGGG 433
Query: 441 ALFSWAQKRLDASFLPGS------QMVFFVLNVVEAIGVLMTFKPFLAQ 483
LFSWAQKR DA+FLPG +MVF VLN+V+ +G+++TF P+++Q
Sbjct: 434 VLFSWAQKRQDATFLPGQIFAPCDEMVFLVLNLVQLVGLILTFIPYISQ 482
|
|
| ASPGD|ASPL0000053890 AN0890 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 342 (125.4 bits), Expect = 4.1e-45, Sum P(2) = 4.1e-45
Identities = 71/206 (34%), Positives = 106/206 (51%)
Query: 36 SGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGR 95
S PI +LF + + +C + S+FP++Y M++ F + + I YAG + SSF F
Sbjct: 21 SAFPIRQLFVLALCRICEPIAFMSIFPYVYHMVESFHVTSNDRKIALYAGLITSSFTFAE 80
Query: 96 ALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI 155
+FWG ++D+ GRKPV+IMG I +FG + N A++ R L G LNG +G +
Sbjct: 81 FSAGMFWGRMSDKIGRKPVLIMGLVGTAISMVVFGFAPNLATAMIARALGGLLNGNIGVL 140
Query: 156 KAYACEIFR-EEHQALGLSTVSTXXXXXXXXXXXXXXXXXQPAEKYPNLFSSESLFGKFP 214
+ EI +EHQ S + QP + YP LFS ES+F KFP
Sbjct: 141 QTTVAEIVTVKEHQPRAYSIMPFVWCLGSIIGPAMGGALSQPCDNYPWLFSGESIFKKFP 200
Query: 215 YFLPCL-CISLFAFGVTIAAFWLPET 239
+ LP L C+ + G+ + +L ET
Sbjct: 201 FLLPNLVCVVVLMTGIVVGLLFLEET 226
|
|
| DICTYBASE|DDB_G0269964 DDB_G0269964 "Uncharacterized membrane protein YCR023C" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 282 (104.3 bits), Expect = 5.4e-34, Sum P(2) = 5.4e-34
Identities = 65/210 (30%), Positives = 102/210 (48%)
Query: 32 KDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSF 91
K+ + +P +L ++++LC A+ SS F ++ I + + E +G YAG++ SSF
Sbjct: 8 KNHVTPMPWKKLIGAYVLLLCEAISTSSFFTYISPFIIFLGVTDKAELVGYYAGFIASSF 67
Query: 92 MFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGL 151
+ L+S FWG +ADR GRKP++I G+ VI G S + M +L+R + G LNG
Sbjct: 68 SAAQFLSSFFWGKMADRLGRKPILIFGSVGSVISLLCIGTSKSLVMLILSRSINGLLNGN 127
Query: 152 LGPIKAYACEIFREEHQALGLSTVSTXXXXXXXXXXXXXXXXXQPAEKYPNLFSSESLFG 211
+G +K Y E + +Q V P + ++F LF
Sbjct: 128 IGVVKTYIGECTDKTNQVEAFGWVGLTWGLGSILGPSIGGLLADPVKNMSSIFKGSKLFE 187
Query: 212 KFPYFLPCLCIS-LFAFGVTIAAFWLPETL 240
FP+FLP L I+ L G ++ ETL
Sbjct: 188 LFPFFLPNLVIAFLTIIGCVFTQLYMKETL 217
|
|
| CGD|CAL0004954 orf19.3432 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 275 (101.9 bits), Expect = 8.7e-31, Sum P(3) = 8.7e-31
Identities = 56/145 (38%), Positives = 89/145 (61%)
Query: 32 KDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSF 91
K++ + PI ++ I II L +S+FP++YFMI+DF IA +EEDI Y+GY+ SSF
Sbjct: 8 KESLNDFPIRQMIIICIIRFAEPLAFTSIFPYIYFMIRDFHIAIKEEDISQYSGYIASSF 67
Query: 92 MFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGL 151
+ L ++ WG ++++ GRK ++I+G I LFG + N++ A++ R L G LNG
Sbjct: 68 AICQFLFAIHWGTMSEKLGRKLILIIGLLGTSISLLLFGFARNYYWALIARCLAGVLNGN 127
Query: 152 LGPIKAYACEIFREE-HQALGLSTV 175
+ ++ EI E+ HQ L ST+
Sbjct: 128 VAVLRTMIGEIAVEKRHQPLAFSTM 152
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| CGD|CAL0002781 orf19.4550 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 291 (107.5 bits), Expect = 4.3e-30, Sum P(2) = 4.3e-30
Identities = 55/145 (37%), Positives = 85/145 (58%)
Query: 32 KDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSF 91
++ G P+ ++F I I + +SLFP++YFMI+DF IA DI Y+GY+ +SF
Sbjct: 11 REQMKGFPLWQMFVISCIRFSEPIAFTSLFPYVYFMIRDFNIAPHSTDIAKYSGYLSASF 70
Query: 92 MFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGL 151
F + V WG +D+YGRK +++MG + +FG S NFW+AV R L+G LNG
Sbjct: 71 AFCQFFCCVQWGKASDKYGRKKILLMGLLGTAVSMIIFGFSPNFWVAVFARSLMGCLNGN 130
Query: 152 LGPIKAYACEIF-REEHQALGLSTV 175
+ ++ EI + HQ++ ST+
Sbjct: 131 IAVLRTAIGEIATHKNHQSIAFSTL 155
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| ASPGD|ASPL0000051539 AN1423 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 259 (96.2 bits), Expect = 7.2e-30, Sum P(2) = 7.2e-30
Identities = 62/175 (35%), Positives = 94/175 (53%)
Query: 67 MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN 126
M+KDF + + D YAG + ++F A T +FWG ++DR GRKPVII G A ++
Sbjct: 1 MVKDFHMGEGS-DASFYAGILVATFSLVEAFTGMFWGALSDRVGRKPVIISGLAGTIVSL 59
Query: 127 TLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIF-REEHQALGLSTVSTXXXXXXXX 185
+ G + N+W+A+L R L G LNG +G I+ EI R EH+ + +
Sbjct: 60 LIVGFAPNYWVALLGRGLGGLLNGNIGVIQTMVGEIVKRPEHERPAIGGL---------- 109
Query: 186 XXXXXXXXXQPAEKYPNLFSSESLFGKFPYFLP-CLCISLFAFGVTIAAFWLPET 239
+PA+ YP++FS + +FG+FPY LP +C +L + A +L ET
Sbjct: 110 -------LAKPADNYPSVFSRDGIFGRFPYLLPNVVCSTLLLGSILFAWAFLQET 157
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| DICTYBASE|DDB_G0282945 DDB_G0282945 [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 282 (104.3 bits), Expect = 9.6e-29, Sum P(2) = 9.6e-29
Identities = 63/212 (29%), Positives = 109/212 (51%)
Query: 29 DQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVG 88
+QL DT + LP+ ++ +I+II+LC A+ S+FP++ F++ F + + +G + G +
Sbjct: 65 NQLDDTITPLPMMKILAIFIIMLCDAINSLSIFPYVNFLVSSFNLTTDKNKLGYFVGILA 124
Query: 89 SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSL 148
SS+ + ++S FWG ++ GR+P +++G +I T G S N+ M V+ RFL G L
Sbjct: 125 SSYYIAQLVSSFFWGWFSNYRGRRPSLLLGLIGSMICLTGVGFSRNYPMVVVFRFLSGLL 184
Query: 149 NGLLGPIKAYACEIFREEHQALGLSTVSTXXXXXXXXXXXXXXXXXQPAEKYPNLFSSES 208
NG + K EI +QA S + +K+P L +
Sbjct: 185 NGNVSIAKTMLGEITDSSNQAKAFSFIGLSWGVGGIIAPLIGGFFSNFCKKHPELLGDGN 244
Query: 209 LFGKFPYFLPCLCISLFAF-GVTIAAFWLPET 239
+F +FPY LP + LF+ G+ + +L E+
Sbjct: 245 IFCRFPYLLPNIICVLFSLTGLVLGYVYLQES 276
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| ASPGD|ASPL0000011265 AN4019 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 264 (98.0 bits), Expect = 2.6e-28, Sum P(2) = 2.6e-28
Identities = 57/206 (27%), Positives = 102/206 (49%)
Query: 38 LPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRAL 97
LP+ +L + I + ++S P+L MI+ + + E + +AG + F +A
Sbjct: 8 LPVRQLLILSICRFAEPIAVTSYLPYLPEMIESVGVPQSE--VAKWAGLTSAISSFSQAA 65
Query: 98 TSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKA 157
+V+WG +DR+GRKP+I++G + ++ + FGLS + M + R ++G +NG +G I+
Sbjct: 66 MAVYWGTASDRFGRKPIILLGLTATMVLSLAFGLSKSLPMLITCRGMIGFMNGNVGIIRT 125
Query: 158 YACEIFRE-EHQALGLSTVSTXXXXXXXXXXXXXXXXXQPAEKYPNLFSSESLFGKFPYF 216
E+ ++ E Q S + +P EKYP +F F ++P+
Sbjct: 126 MVAEMVQDKELQPRAFSIMPMVWTIGSIFGPSFGGSLARPTEKYPEIFGHSWFFKEYPFV 185
Query: 217 LPCLCISLF-AFGVTIAAFWLPETLH 241
LP + F G++ +L ETLH
Sbjct: 186 LPNMVAGFFFIIGISTGFLFLHETLH 211
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q94BZ1 | ZIFL1_ARATH | No assigned EC number | 0.6942 | 0.9629 | 0.9790 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | gw1.VIII.1473.1 | hypothetical protein (476 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 486 | |||
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 1e-22 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 2e-18 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 5e-12 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 2e-11 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 2e-11 | |
| PRK09874 | 408 | PRK09874, PRK09874, drug efflux system protein Mdt | 7e-11 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 4e-08 | |
| PRK12307 | 426 | PRK12307, PRK12307, putative sialic acid transport | 1e-07 | |
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 4e-07 | |
| PRK11102 | 377 | PRK11102, PRK11102, bicyclomycin/multidrug efflux | 2e-06 | |
| PRK08633 | 1146 | PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola | 4e-06 | |
| TIGR00900 | 365 | TIGR00900, 2A0121, H+ Antiporter protein | 5e-05 | |
| PRK10473 | 392 | PRK10473, PRK10473, multidrug efflux system protei | 1e-04 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 3e-04 | |
| PRK11043 | 401 | PRK11043, PRK11043, putative transporter; Provisio | 8e-04 | |
| PRK11551 | 406 | PRK11551, PRK11551, putative 3-hydroxyphenylpropio | 0.001 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 0.002 | |
| COG0738 | 422 | COG0738, FucP, Fucose permease [Carbohydrate trans | 0.004 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 98.3 bits (245), Expect = 1e-22
Identities = 84/393 (21%), Positives = 146/393 (37%), Gaps = 49/393 (12%)
Query: 46 IWIIVLCTALPISSLFPFL-YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGL 104
+++ L S L P L ++ +D I+ E G + ++F G AL G
Sbjct: 1 LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTE------IGLLLTAFSLGYALAQPLAGR 54
Query: 105 VADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIF 163
++DR+GR+ V+++G + L + + W+ ++ R L G G L P A + F
Sbjct: 55 LSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWF 114
Query: 164 REEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCIS 223
E + L +S +G+G +GP LGG LA SLFG FL ++
Sbjct: 115 PPEERGRALGLLSAGFGLGAALGPLLGGLLA-------------SLFGWRAAFLILAILA 161
Query: 224 LFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWP 283
L A + P + +E K LL++
Sbjct: 162 LLAAVLAALLLPRPPPESKRP-----------------KPAEEAPAPLVPAWKLLLRDPV 204
Query: 284 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSL 343
L + + F+L P L S + G +L + G + +L L
Sbjct: 205 LWLLLALLLFGFA-------FFALLTYLPLYQEVLGLSALLAGLLLGLAGLLGAIGRLLL 257
Query: 344 YPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITG 403
+R+ G +A +L I +++ + A ++ + +
Sbjct: 258 GRLSDRL-GRRRRLLLALLLLILAALGLALLSLTESSLWLLV---ALLLLGFGAGLVFPA 313
Query: 404 LFILQNRAVDQDQRGAANGIAMTGMSLFKAAGP 436
L L + +++RG A+G+ T SL A GP
Sbjct: 314 LNALVSDLAPKEERGTASGLYNTAGSLGGALGP 346
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Length = 346 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 2e-18
Identities = 89/436 (20%), Positives = 143/436 (32%), Gaps = 88/436 (20%)
Query: 43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFW 102
L +++ + L L P L + +D ++ S AG + S+F G AL S+
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSA------SQAGLIVSAFSLGYALGSLLA 54
Query: 103 GLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIK-AYACE 161
G ++DR+GR+ V+++G + + L + + W+ ++ RFLLG G L P A E
Sbjct: 55 GYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAE 114
Query: 162 IFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLC 221
F + + L S +G+G ++GP LGG LA+ LF +
Sbjct: 115 WFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE-------SLGWRWLFL--------IL 159
Query: 222 ISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKN 281
L + F L L
Sbjct: 160 AILGLLLALLLLFLLRLLL----------------------------------------- 178
Query: 282 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQL 341
++ ++ + GL S +G +L LL +L
Sbjct: 179 LLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL 238
Query: 342 SLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSII 401
L I + + + P L +L GFGL F
Sbjct: 239 GRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGF---------------AF 283
Query: 402 TGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMV 461
L L + + RG A+G+ T SL A GP G L G V
Sbjct: 284 PALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD----------TGGYGGV 333
Query: 462 FFVLNVVEAIGVLMTF 477
F +L + + L+
Sbjct: 334 FLILAALALLAALLLL 349
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MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 5e-12
Identities = 46/152 (30%), Positives = 72/152 (47%), Gaps = 16/152 (10%)
Query: 89 SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSL 148
+ + G+ + S GL+ DR+GRKPV+++G V+ +F LS N + ++ RFL G
Sbjct: 5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFG 64
Query: 149 NGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSE 207
A +I+ E + + L +S +G ++GP LGG LAQ
Sbjct: 65 AAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQ-------FLGWR 117
Query: 208 SLFGKFPYFLPCLCISLFAFGVTIAAFWLPET 239
+ F FL L ++ F + AF LPET
Sbjct: 118 APF----LFLAILALAAFI----LLAFLLPET 141
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Length = 141 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 2e-11
Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
Query: 84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRF 143
G++ S+ + G A ++F+G +ADR GR+ V++ +F L L+ N ++ RF
Sbjct: 54 LGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRF 113
Query: 144 LLG-SLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL 193
L G L GL+ + A E + + + + + IG +G L G+L
Sbjct: 114 LAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWL 164
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[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 2e-11
Identities = 74/409 (18%), Positives = 133/409 (32%), Gaps = 74/409 (18%)
Query: 84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRF 143
AG + +++ G AL + L+ R R+ +++ A ++ N L L+ +F + +L R
Sbjct: 50 AGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARA 109
Query: 144 LLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPN 202
L G +G+ I A A + + L+ V T + ++G LG FL Q
Sbjct: 110 LAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQ------- 162
Query: 203 LFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASA 262
LFG FL ++L A + LP +
Sbjct: 163 ------LFGWRATFLAIAVLALLAL--LLLWKLLPP-----------------------S 191
Query: 263 EVKEEEGREATPKKSLLKNWPLMSSIIVY-CVFSLHDMAYSEIFSLWANSPKKLGGLNYS 321
E+ LL+ ++ ++ + H Y+ I P +S
Sbjct: 192 EISGSLPGPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYI------RPFLESVAGFS 245
Query: 322 TQMVGEVLAITGF-----SLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAM 376
V VL G +LL +L+ R L ++ +L + + P +A+
Sbjct: 246 VSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALAL 304
Query: 377 LSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGP 436
F F + A + + D A + + +L A G
Sbjct: 305 ALLFLWGFAFSPALQG------------LQTRLARLAPDAADLAGSLNVAAFNLGIALGA 352
Query: 437 AGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQRH 485
A GG + G +V + + +L+ R
Sbjct: 353 ALGGLVLDAL----------GYAATGWVGAALLLLALLLALLSARKDRR 391
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Length = 394 |
| >gnl|CDD|182127 PRK09874, PRK09874, drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Score = 63.4 bits (154), Expect = 7e-11
Identities = 52/180 (28%), Positives = 79/180 (43%), Gaps = 9/180 (5%)
Query: 47 WIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGS-SFMFGRALTSVFWGLV 105
W+ T S + PFL ++ + + ++G V S +F+F A+ S FWG +
Sbjct: 20 WLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSA-LNMWSGLVFSITFLFS-AIASPFWGGL 77
Query: 106 ADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFRE 165
ADR GRK +++ + I L GL+ N W ++ R LLG L G + A
Sbjct: 78 ADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQVPR 137
Query: 166 EHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLF 225
L T+ST G ++GP GG LA P F + S+ C ++LF
Sbjct: 138 NKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASV------LFLCFLVTLF 191
|
Length = 408 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 4e-08
Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 89 SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLG 146
S F G L S +G ++DR+GRK V+++ T + L S N+ + ++ R L+G
Sbjct: 134 SCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVG 191
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (129), Expect = 1e-07
Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 10/159 (6%)
Query: 43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFW 102
LFS W+ + +F +Y + D + E ++ ++ GR +
Sbjct: 20 LFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDME------GAFLATAAFIGRPFGGALF 73
Query: 103 GLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLG-SLNGLLGPIKAYACE 161
GL+AD++GRKP+++ + + L GL+ M L+RF++G + G YA E
Sbjct: 74 GLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVE 133
Query: 162 IFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY 200
+ + ++ + + + +GIG II F+ AE Y
Sbjct: 134 SWPKHLKSKASAFLVSGFGIGNIIAAY---FMPSFAEAY 169
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Length = 426 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 4e-07
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Query: 57 ISSLFPFLYFMIKDFQIAKREEDIGS--YAGYVGSSFMFGRALTSVFWGLVADRYGRKPV 114
I + + F + + S +G + S F G + S+F G + DR+GRK
Sbjct: 19 IGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKS 78
Query: 115 IIMGTASVVIFNTLFGLSV--NFWMAVLTRFLLG 146
+++G VI L G + +F+M ++ R ++G
Sbjct: 79 LLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVG 112
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Length = 449 |
| >gnl|CDD|182964 PRK11102, PRK11102, bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 2e-06
Identities = 49/182 (26%), Positives = 78/182 (42%), Gaps = 32/182 (17%)
Query: 72 QIAKREEDIGSYAGYVG---SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTL 128
IA D G AG V S+++ G A+ +F+G +AD +GRKPVI+ GT +
Sbjct: 16 VIAA---DFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVA 72
Query: 129 FGLSVNFWMAVLTRFLLGSLNGLLGP-----IKAYACEIFREEHQALGLSTVSTAWGIGL 183
L+ + RF L+GL I A ++F +E + +S V+ I
Sbjct: 73 CALAQTIDQLIYMRF----LHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAP 128
Query: 184 IIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL-PETLHR 242
++ P +GG+L FS ++F ++L A F+ PETL +
Sbjct: 129 LLAPIIGGWLL-------VWFSWHAIF---------WVLALAAILAAALVFFFIPETLPK 172
Query: 243 HN 244
Sbjct: 173 ER 174
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Length = 377 |
| >gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 4e-06
Identities = 91/412 (22%), Positives = 151/412 (36%), Gaps = 97/412 (23%)
Query: 97 LTSVFWGLVADRYGRKPVI-IMGTASVVI--FNTLFGLSVNFWMAVLTRFLLGSLNGLLG 153
L S G +AD++ + VI I+ V + L FW+A FLLG+ + +
Sbjct: 62 LLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYS 121
Query: 154 PIKA-YACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGK 212
P K E+ +E+ + + + ++ G AL FL + ++ S
Sbjct: 122 PAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFE--SVNG---NTPSEILG 176
Query: 213 FPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREA 272
+ +++ G I A+ LP+ A+A ++ +
Sbjct: 177 RIAPAGLVLLAVAVLG-LIFAYRLPKV-------------------PAAAPEVFDKKKYL 216
Query: 273 TPK------KSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSP---KKLGGLNYSTQ 323
PK K L + L +II F S++ AN P K++ GL+ +T
Sbjct: 217 FPKLLWRNLKLLRSDRVLWLAIIGLSYF----WFISQL--AQANFPAYAKEVLGLD-NTF 269
Query: 324 MVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG----VLTIPL----LTSYPYIA 375
V +LA + + +G ++ R++G + +PL L
Sbjct: 270 QVQYLLAASAIGI-------------GIGSLLAGRLSGRHIELGLVPLGALGLA------ 310
Query: 376 MLSGFGLAFLLNCASVVKNLLSVSIITGLFI------LQNRAVDQDQRG----AANGIAM 425
LS F L + ASV+ GLFI +Q RA + + G A N +
Sbjct: 311 -LSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRA-PEKELGKVLAANNFLQN 368
Query: 426 TGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTF 477
GM LF A LFS L +F+++ +V IG L T
Sbjct: 369 VGMLLFLAL-----TTLFSGLG--LSP------AGLFYLIALVTLIGTLYTL 407
|
Length = 1146 |
| >gnl|CDD|162098 TIGR00900, 2A0121, H+ Antiporter protein | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 5e-05
Identities = 28/123 (22%), Positives = 45/123 (36%), Gaps = 10/123 (8%)
Query: 81 GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII-------MGTASVVIFNTLFGLSV 133
S + M + S G +ADRY RK V+I + A + L GL++
Sbjct: 33 ASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNI 92
Query: 134 NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGF 192
W + +L P +A ++ EE S + I+GP +GG
Sbjct: 93 --WQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGL 150
Query: 193 LAQ 195
+
Sbjct: 151 MYA 153
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 365 |
| >gnl|CDD|182486 PRK10473, PRK10473, multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 23/59 (38%), Positives = 32/59 (54%)
Query: 89 SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGS 147
S ++ G A +F G +ADR GRKPV I G A +I + L L+ + + RFL G
Sbjct: 45 SVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGI 103
|
Length = 392 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 3e-04
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 13/120 (10%)
Query: 82 SYAGYVGSSFMFGRALTSVFWGLVADRYGRKPV----IIMGTASVVIFNTLFGLSVNFWM 137
S A G+ F FG + S+ +G +ADR G + ++ +V++ +TLF ++ +
Sbjct: 285 SLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLL 344
Query: 138 AVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIG---LIIGPALGGFLA 194
+ F + NG + A + +A G V A GIG IIGP L G+L
Sbjct: 345 GAIAGFFV---NGGQSGLYALMALFYPTAIRATG---VGWAIGIGRLGAIIGPILAGYLL 398
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|182924 PRK11043, PRK11043, putative transporter; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 8e-04
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 3/45 (6%)
Query: 77 EEDIGSYAGYVGSS---FMFGRALTSVFWGLVADRYGRKPVIIMG 118
+ D+ + A V +S F+ G AL + WG ++DRYGRKPV++ G
Sbjct: 33 QADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAG 77
|
Length = 401 |
| >gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.001
Identities = 17/62 (27%), Positives = 32/62 (51%)
Query: 85 GYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFL 144
G+ S+ + G ++ G +ADR GRK ++I+ A +F+ + +F ++ R L
Sbjct: 53 GWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLL 112
Query: 145 LG 146
G
Sbjct: 113 TG 114
|
Length = 406 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.002
Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 8/125 (6%)
Query: 71 FQIAKREEDI---GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKP--VIIMGTASVVIF 125
F + E+D+ S G +G G + + FWG +AD+ GRK +I + F
Sbjct: 188 FVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAF 247
Query: 126 NTLFGLSVNFWMAVLTRFLLG-SLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLI 184
+ F F++ R L G + G + + +Y E +E + LS + W IG I
Sbjct: 248 FSSFVQGYGFFL--FCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGI 305
Query: 185 IGPAL 189
A+
Sbjct: 306 YAAAM 310
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|223809 COG0738, FucP, Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.004
Identities = 41/158 (25%), Positives = 65/158 (41%), Gaps = 16/158 (10%)
Query: 40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTS 99
+T LF +W + C L P L + F + E A + +F G + S
Sbjct: 18 LTSLFFLWGFITCL---NDILIPHL---KEVFDLTYFE------ASLIQFAFFGGYFIMS 65
Query: 100 VFWGLVADRYGRKPVIIMGTASVVIFNTLFG---LSVNFWMAVLTRFLLGSLNGLL-GPI 155
+ GL+ + G K I++G + LF S ++ ++ F+L S GLL
Sbjct: 66 LPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAA 125
Query: 156 KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL 193
Y + + E A L+ G+G I+GP LG L
Sbjct: 126 NPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSL 163
|
Length = 422 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 486 | |||
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 100.0 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 100.0 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 100.0 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 100.0 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 100.0 | |
| PRK10504 | 471 | putative transporter; Provisional | 100.0 | |
| PRK03699 | 394 | putative transporter; Provisional | 100.0 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 100.0 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 100.0 | |
| PRK12382 | 392 | putative transporter; Provisional | 100.0 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 100.0 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 100.0 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 100.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 100.0 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 100.0 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 100.0 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 100.0 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 100.0 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 100.0 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 100.0 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 100.0 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 100.0 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 100.0 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 100.0 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 100.0 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 100.0 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 100.0 | |
| PRK10054 | 395 | putative transporter; Provisional | 100.0 | |
| PRK11043 | 401 | putative transporter; Provisional | 100.0 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 100.0 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 100.0 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 100.0 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 100.0 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 100.0 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 100.0 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 100.0 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 100.0 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 100.0 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 100.0 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 100.0 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.98 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.97 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.97 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.97 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.97 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.97 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.97 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.97 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.97 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.97 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.97 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.97 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.96 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.96 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.96 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.96 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.96 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.96 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.96 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.96 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.96 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.96 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.96 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.96 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.96 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.95 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.95 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.94 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.94 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.93 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.93 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.92 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.92 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.92 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.9 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.9 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.89 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.89 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.89 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.88 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.88 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.87 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.86 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.86 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.85 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.85 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.83 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.83 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.82 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.82 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.82 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.8 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.73 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.7 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.65 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.62 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.62 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.61 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.57 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.57 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.57 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.56 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.56 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.55 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.54 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.53 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.52 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.51 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.51 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.5 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.5 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.49 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.48 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.47 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.46 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.46 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.45 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.44 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.44 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.4 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.4 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.4 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.39 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.39 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.38 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.37 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.36 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.35 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.35 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.35 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.35 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.34 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.34 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 99.34 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.34 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.33 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.33 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.32 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.32 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.28 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.28 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.28 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.27 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.27 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.27 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 99.26 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.26 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.26 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.26 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.26 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.25 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.25 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.25 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.23 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.23 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.22 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.22 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.21 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.2 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.2 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.2 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.2 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.2 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 99.19 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.19 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.19 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.19 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.18 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.18 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.18 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.18 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.16 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.15 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.15 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.15 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 99.14 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.14 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.13 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.13 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.13 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.12 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.12 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.1 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.09 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.09 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.09 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 99.08 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.05 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.05 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.05 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.03 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 99.02 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.02 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.02 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.02 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.0 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.99 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.99 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.99 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.96 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.93 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.93 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.92 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.91 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.89 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.87 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.87 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.86 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.86 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.82 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.78 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.76 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.76 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.73 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.72 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 98.69 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.67 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.66 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.63 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.62 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.6 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 98.59 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.56 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.55 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.54 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.53 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.49 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.48 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.46 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.44 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.43 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 98.38 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.17 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 98.11 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.0 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 97.99 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 97.97 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 97.93 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 97.93 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.87 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 97.85 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 97.81 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.76 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 97.67 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.64 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 97.26 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.2 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.2 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.19 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 97.17 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.15 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.11 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.08 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.99 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 96.79 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 96.48 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 96.38 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.27 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 96.01 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 95.76 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 95.61 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 95.53 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 95.5 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 93.98 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 93.44 | |
| KOG4830 | 412 | consensus Predicted sugar transporter [Carbohydrat | 92.18 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 91.94 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 90.06 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 89.78 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 81.67 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 80.97 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 80.45 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 80.09 |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-38 Score=284.35 Aligned_cols=372 Identities=20% Similarity=0.208 Sum_probs=301.5
Q ss_pred CCChhHHHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhh
Q 011424 37 GLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII 116 (486)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~ 116 (486)
+..+..++.+.++.|...........++|++.+|+|.|..+ .|+..|+|.++..++.|+...+.||+.||++++
T Consensus 9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~------aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl 82 (394)
T COG2814 9 KPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGA------AGQLITAYALGVALGAPLLALLTGRLERRRLLL 82 (394)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHcccchHHHHH
Confidence 34556788899999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcc
Q 011424 117 MGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (486)
Q Consensus 117 ~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~ 195 (486)
..+.++.++++++++++||+.++++|++.|+..|.+++. .++..|..|+++|++++++...+..++.++|.+++.++.+
T Consensus 83 ~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~ 162 (394)
T COG2814 83 GLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQ 162 (394)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 999999999999999999999999999999999999986 9999999999999999999999999999999999999999
Q ss_pred cCccCCcccccccccccCCChhhHHHHHHHHHHHH-HHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCCCc
Q 011424 196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATP 274 (486)
Q Consensus 196 ~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (486)
.+||| ..|.+.+..+++.+ ..+..+| |+..+++. +.+..+
T Consensus 163 -------~~GWR---------~~F~~ia~l~ll~~~~~~~~lP--~~~~~~~~---------------------~~~~~~ 203 (394)
T COG2814 163 -------LFGWR---------ATFLAIAVLALLALLLLWKLLP--PSEISGSL---------------------PGPLRT 203 (394)
T ss_pred -------HhhHH---------HHHHHHHHHHHHHHHHHHHhCC--CccCCCCC---------------------CcchhH
Confidence 55555 44577777777655 4556777 21111111 011223
Q ss_pred ccccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 011424 275 KKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPI 354 (486)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (486)
..+++|+|.++...+..++....++..+++...++.+. .|++....++.+..+++++++++. .++++.|| +.+
T Consensus 204 ~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v-----~g~s~~~vs~~Ll~~Gv~~~~Gn~-~gGrl~dr-~~~ 276 (394)
T COG2814 204 LLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESV-----AGFSVSAVSLVLLAFGIAGFIGNL-LGGRLADR-GPR 276 (394)
T ss_pred HHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHc-----cCCCHhHHHHHHHHHHHHHHHHHH-HHhhhccc-cch
Confidence 45689999999999999988888888877777676655 799999999999999999999999 66667777 777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcc--ccCchhhHHhHHHHHHHHHH
Q 011424 355 MVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAV--DQDQRGAANGIAMTGMSLFK 432 (486)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~g~~~~~~~~g~ 432 (486)
+.+.....+..+....+.+.... .+. ......+ .+....+.......+.. .|+.++.+.+++....++|.
T Consensus 277 ~~l~~~~~l~a~~~l~l~~~~~~----~~~-~~~~~~~---wg~a~~~~~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgi 348 (394)
T COG2814 277 RALIAALLLLALALLALTFTGAS----PAL-ALALLFL---WGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNLGI 348 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHhcch----HHH-HHHHHHH---HHHHhhhhhhHHHHHhcccCCCchHHHHHHHHHHHHHHH
Confidence 77777766666665555544321 121 2222222 23333344444444433 36899999999999999999
Q ss_pred HHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhc
Q 011424 433 AAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK 478 (486)
Q Consensus 433 ~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~ 478 (486)
.+|..++|.++|+. |+....++.+.+.+++.++.+.
T Consensus 349 a~GA~lGG~v~~~~----------g~~~~~~~~a~l~~~a~~~~~~ 384 (394)
T COG2814 349 ALGAALGGLVLDAL----------GYAATGWVGAALLLLALLLALL 384 (394)
T ss_pred HHHHHHHHHHHHhh----------chHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999997 8999999999999988887765
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=309.89 Aligned_cols=412 Identities=16% Similarity=0.132 Sum_probs=296.6
Q ss_pred HHHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHH
Q 011424 42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS 121 (486)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~ 121 (486)
.++.+.++.+...++...+...+|.+.++++.+..+ .+++.+++.++.+++++++|+++||+|||+++++++++
T Consensus 168 l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~------~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil 241 (742)
T TIGR01299 168 LFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSG------KGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSV 241 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 344556666777778888999999999999999988 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccC
Q 011424 122 VVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY 200 (486)
Q Consensus 122 ~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~ 200 (486)
.+++.++++++++++.++++|++.|++.|...+. .+++.|++|+++|++.++++.++..+|.++++.++..+..
T Consensus 242 ~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~----- 316 (742)
T TIGR01299 242 NGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIP----- 316 (742)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 9999999999999999999999999998887776 9999999999999999999999999999999999988876
Q ss_pred Ccccccccc----cccCCChhhHHHHHHHHHHHHHHHHhcCCcccCCCCCCCccc--chhhhcccccc------------
Q 011424 201 PNLFSSESL----FGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCD--VSYDALESASA------------ 262 (486)
Q Consensus 201 ~~~~gw~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~--~~~~~~~~~~~------------ 262 (486)
.+||+.. +...+||..+++.+++.++.++..+++||+|++...+.+..+ ...+++.....
T Consensus 317 --~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~ 394 (742)
T TIGR01299 317 --HYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSV 394 (742)
T ss_pred --hccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHH
Confidence 5676532 224578998888888888777888899999987433322111 11111110000
Q ss_pred -------chh---hhcccCC------------------CcccccccchhhH---HHHHHHHHHHhhhhhhhHHHHHhhcC
Q 011424 263 -------EVK---EEEGREA------------------TPKKSLLKNWPLM---SSIIVYCVFSLHDMAYSEIFSLWANS 311 (486)
Q Consensus 263 -------~~~---~~~~~~~------------------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (486)
+.+ +.+++.. ..++++++.+..+ ...+.+++..+...+...++|..+..
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~ 474 (742)
T TIGR01299 395 NHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKH 474 (742)
T ss_pred HHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0000000 0233455544333 33444455555556666676654311
Q ss_pred c----------------ccc-------C-------cc------cc-----------------------------------
Q 011424 312 P----------------KKL-------G-------GL------NY----------------------------------- 320 (486)
Q Consensus 312 ~----------------~~~-------~-------~~------g~----------------------------------- 320 (486)
. ... . ++ |+
T Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~ 554 (742)
T TIGR01299 475 LQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDT 554 (742)
T ss_pred HHHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhh
Confidence 0 000 0 00 00
Q ss_pred -------------------------------c-------cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 011424 321 -------------------------------S-------TQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGV 362 (486)
Q Consensus 321 -------------------------------~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (486)
+ .........+.+++.+++.+ +.+++.||+|||+.+..+.+
T Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~i-l~g~L~Dr~GRr~~l~~~~~ 633 (742)
T TIGR01299 555 LFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNI-VSALLMDKIGRLRMLAGSMV 633 (742)
T ss_pred hccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCHHHHHHHHH
Confidence 0 01123345566678888887 66777777899999988888
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHH
Q 011424 363 LTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGAL 442 (486)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l 442 (486)
+.+++.+++.+.... . .+++..++.+++..+..+....+++|.+|++.|++++|+.++...+|++++|.+.|.+
T Consensus 634 lsai~~ll~~~~~s~-----~-~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L 707 (742)
T TIGR01299 634 LSCISCFFLSFGNSE-----S-AMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSF 707 (742)
T ss_pred HHHHHHHHHHHHccH-----H-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877777666553321 1 1222233444555566778889999999999999999999999999999999999998
Q ss_pred HHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhccccccCCC
Q 011424 443 FSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQRHD 486 (486)
Q Consensus 443 ~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 486 (486)
.+.. ...+|++++++.++++++.++ +||+++
T Consensus 708 ~~~~-----------~~~pf~i~a~~lll~~ll~~~--LPET~~ 738 (742)
T TIGR01299 708 VGIT-----------KAAPILFASAALACGGLLALK--LPDTRG 738 (742)
T ss_pred HHhh-----------hHHHHHHHHHHHHHHHHHHHh--CCCCcc
Confidence 8754 556888888888887777776 688763
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-38 Score=279.85 Aligned_cols=396 Identities=18% Similarity=0.141 Sum_probs=309.4
Q ss_pred CCChhHHHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhh
Q 011424 37 GLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII 116 (486)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~ 116 (486)
+.+++.++.+++++...++.+...+...|.+.+|.+.|.+| .|++.+++.+.|.++..+.|.++||.+.|+.+.
T Consensus 25 ~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~------lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~ 98 (448)
T COG2271 25 RWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQ------LGILGSAFSITYGVSKFVMGVLSDRSNPRYFMA 98 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHhhhhcccCCCceeeh
Confidence 34445566788889999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhccchhh-HHHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhh--hhh
Q 011424 117 MGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG--GFL 193 (486)
Q Consensus 117 ~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~--~~l 193 (486)
+++++.++.+++++++++.+.+.+..++.|..+|.-.| +...++.|++++|||+..++++++.++|..+.|++. +++
T Consensus 99 ~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~ 178 (448)
T COG2271 99 FGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFF 178 (448)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHH
Confidence 99999999999999999999999999999999999877 599999999999999999999999999999999999 777
Q ss_pred cccCccCCcccccccccccCCChhhHHHHHHHHHHH-HHHHHhcCCcccCCCCCCCcccchhhhccccccchhhhccc--
Q 011424 194 AQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGR-- 270 (486)
Q Consensus 194 ~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 270 (486)
.. +++||. .+++-++++++. ++.++..+|+|+...-++-++-.. +..+.. ++++++
T Consensus 179 ~~-------~~~w~~---------~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~-d~~e~~----~~~~~~~~ 237 (448)
T COG2271 179 AF-------HGGWRA---------AFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRG-DPLEIY----EEEKENEG 237 (448)
T ss_pred Hh-------ccchhH---------HHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhc-Cchhhh----hhhccCCC
Confidence 76 445544 446666666554 556667788776643322111000 000000 111111
Q ss_pred ---CCCcccccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 011424 271 ---EATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFL 347 (486)
Q Consensus 271 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (486)
...-.+.+++||.+|.+.+..++....-++...|.|+|+.+. .|+|..+++...+..-++++++++ +.+++
T Consensus 238 ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~-----k~~s~~~a~~a~~lfE~agl~G~L-l~Gwl 311 (448)
T COG2271 238 LTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEV-----KGFSLVKANWAISLFEVAGLPGTL-LAGWL 311 (448)
T ss_pred ccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh-----cCCCHHHHHHHHHHHHHHhhHHHH-HHHHH
Confidence 112456788999999999999999999999999999999886 799999999999999999999999 45555
Q ss_pred HHh-h-hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHH
Q 011424 348 ERI-L-GPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAM 425 (486)
Q Consensus 348 ~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 425 (486)
+|+ + |||....+.+.+.....++..+... ..++....++.+..+++..+..-..-....|..|++..|++.|+..
T Consensus 312 SDklfkgrR~p~~~i~~~~i~~~~~~~w~~~---~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~G 388 (448)
T COG2271 312 SDKLFKGRRGPMALIFMLLITASLVLYWLAP---NGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVG 388 (448)
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHHcCC---CccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhh
Confidence 554 4 5665555544444433333333222 1233444555555666666666666777889999999999999999
Q ss_pred HHHHH-HHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhc
Q 011424 426 TGMSL-FKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK 478 (486)
Q Consensus 426 ~~~~~-g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~ 478 (486)
.+.++ |.+.+....|++.|.. ||...|++..+.++++.++...
T Consensus 389 lf~Yl~Ga~~a~~~~g~i~d~~----------gW~g~Fi~~~~~a~l~~lll~~ 432 (448)
T COG2271 389 LFAYLIGAALAGLPLGYIADTW----------GWDGGFIVLSIAALLAILLLLP 432 (448)
T ss_pred hHHHHhhHHhcCCcceeeEecC----------CCcchHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999998875 7888888887777777666544
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=284.02 Aligned_cols=359 Identities=15% Similarity=0.077 Sum_probs=258.6
Q ss_pred hhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHhcc
Q 011424 53 TALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS 132 (486)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a 132 (486)
+......+.+.+|.+.+|+|.++.+ .|++.+.+.+++.+++++.|+++||+|||+++..+......+......+
T Consensus 3 ~~~~~~~~~~~lp~i~~~~~~s~~~------~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~ 76 (368)
T TIGR00903 3 SQAIWVTFSPVLSLVAEDIDVSKEE------LGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDP 76 (368)
T ss_pred hhHHHHHHHhhHHHHHHHhCcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHh
Confidence 4456677899999999999999999 9999999999999999999999999999988766555554444333334
Q ss_pred chHHHHHHHHHHHHhhccchhhHHHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccCCccccccccccc
Q 011424 133 VNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGK 212 (486)
Q Consensus 133 ~~~~~l~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~~~~gw~~~~~~ 212 (486)
+|++.++++|+++|++.+...+....++|++|+|+|++++++.+.+..+|.++++++++++.+ .+|||
T Consensus 77 ~~~~~l~~~R~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~-------~~gWr----- 144 (368)
T TIGR00903 77 FNYEWLLACQLLAALGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYT-------AGGLQ----- 144 (368)
T ss_pred ccHHHHHHHHHHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------ccchH-----
Confidence 799999999999999988765566777999999999999999999999999999999999988 44554
Q ss_pred CCChhhHHHHHHHHHHH-HHHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCCCcccccccchhhHHHHHHH
Q 011424 213 FPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVY 291 (486)
Q Consensus 213 ~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (486)
..+.+.++++++. ++..+++||+|++++++. +.. + ..+..+++++||.+|...+..
T Consensus 145 ----~~f~~~~~l~~~~~~~~~~~lp~~p~~~~~~~---~~~-----------~-----~~~~~~~ll~~~~~~~~~~~~ 201 (368)
T TIGR00903 145 ----LLIIPIAAVAAAGIILVLAALPALPFQAAEGF---GFK-----------D-----AVKEFGALAGRKDLWIIGAIL 201 (368)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCc---chH-----------H-----HHHHHHHHHcChhHHHHHHHH
Confidence 4446655555543 455667898875432110 000 0 001356789999999999999
Q ss_pred HHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHH
Q 011424 292 CVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMV-ARIAGVLTIPLLTS 370 (486)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 370 (486)
++.......+..+.|.|+.+ .|++.. .+.......+.+.++.....++.+|+ ++|+. ......+..+....
T Consensus 202 ~~~~~~~~~~~~wlp~~L~~------~g~s~~-~~~~~~l~~~~g~~g~~~~~d~~~r~-~~r~~~~~~~~~~~a~~~~~ 273 (368)
T TIGR00903 202 GFGVALFDNLAIWLEAALRP------AGLEDI-AGDAVALAILAGLIGVAVIPDRVARA-GLRSIYIRAAALLIAAFFLA 273 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHH------CCCChH-HHHHHHHHHHHHHHHHHHhhHHhhhh-hhHHHHHHHHHHHHHHHHHH
Confidence 99888888888999998854 255544 56666666666666665555555554 33333 32233332222222
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhc
Q 011424 371 YPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRL 450 (486)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~ 450 (486)
+.... ..... .....+.+++.....+..+.+.+|.+|++.|+++.|+.+..+++++..+|.+.+.+..
T Consensus 274 ~~~~~-----~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~------ 341 (368)
T TIGR00903 274 LAFEL-----NRLAL-FAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS------ 341 (368)
T ss_pred HHHcc-----ccHHH-HHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc------
Confidence 22111 11111 2222333344555556677889999999999999999999999999999999988872
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHhhc
Q 011424 451 DASFLPGSQMVFFVLNVVEAIGVLMTFK 478 (486)
Q Consensus 451 ~~~~~~g~~~~f~~~~~~~~~~~~~~~~ 478 (486)
|....|.++++..+++.+....
T Consensus 342 ------~~~~~f~~~~~~~~i~~~~~~~ 363 (368)
T TIGR00903 342 ------SAEAYFTFLAILITIAFAIALL 363 (368)
T ss_pred ------CHHHHHHHHHHHHHHHHHHHHh
Confidence 3556778888888887776654
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=300.77 Aligned_cols=405 Identities=15% Similarity=0.070 Sum_probs=276.8
Q ss_pred HHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHH
Q 011424 43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV 122 (486)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~ 122 (486)
+...++..+..++++...++..|.+.+|+|.+..+ .|++.+++.+++.+++++.|+++||+|||+++.++++++
T Consensus 31 ~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~------~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~ 104 (467)
T PRK09556 31 YLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTE------LGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILS 104 (467)
T ss_pred HHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHH
Confidence 44666677778889999999999999999999999 999999999999999999999999999999999988888
Q ss_pred HHHHHHHhc-----cchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhccc
Q 011424 123 VIFNTLFGL-----SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP 196 (486)
Q Consensus 123 ~~~~~~~~~-----a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~ 196 (486)
++..+..++ ++|++.+++.|+++|++.+...|. .++++|++|+++|++++|+...+.++|.+++++++.++.+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~- 183 (467)
T PRK09556 105 AICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGAN- 183 (467)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHH-
Confidence 777766554 689999999999999998888776 8999999999999999999999999999999999877665
Q ss_pred CccCCcccccccccccCCChhhHHHHHHHHHHH-HHHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccC-CC-
Q 011424 197 AEKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGRE-AT- 273 (486)
Q Consensus 197 ~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~- 273 (486)
.+ + ..+|+..+.+.++..++. ++.+++.+++|++.+..++++ ...+...+ .++..+.++.. ..
T Consensus 184 ------~~-----~-~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~ 249 (467)
T PRK09556 184 ------YF-----F-DGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEE-IFGEPISE-EDKETESTDMTKWQI 249 (467)
T ss_pred ------hh-----c-cCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhh-cccCccch-hhhccccccCcHHHH
Confidence 11 0 112343345545444443 334445566554322111110 00000000 00000000000 01
Q ss_pred cccccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011424 274 PKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGP 353 (486)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (486)
..++.+++|.+|...+..++......+...+.|.|+.+. +|++..+++.......++.+++.+ ..+++.||.++
T Consensus 250 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~-----~g~s~~~a~~~~~~~~~~~~ig~~-~~G~lsDr~g~ 323 (467)
T PRK09556 250 FVEYVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQE-----LGFSKEDAINTFTLFEIGALVGSL-LWGWLSDLANG 323 (467)
T ss_pred HHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCC
Confidence 112368899999888888777777667777888887654 789999999999988999999988 66777777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHH-HH
Q 011424 354 IMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSL-FK 432 (486)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~ 432 (486)
|+..........+....+.+ ... ...+ ...+..+..+.+..+..........|.+|++.+|++.|+.+...++ |.
T Consensus 324 r~~~~~~~~~~~~~~~~~~~-~~~--~~~~-~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~ 399 (467)
T PRK09556 324 RRALVACIALALIIFTLGVY-QHA--TSEY-MYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGD 399 (467)
T ss_pred CchHHHHHHHHHHHHHHHHH-Hhc--CcHH-HHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhH
Confidence 77655543333322222211 111 1111 1212222222222222222335566889999999999999999997 77
Q ss_pred HHHhhhHHHHHHHHhhhc--CCCCCCchhHHHHHHHHHHHHHHHHhhc
Q 011424 433 AAGPAGGGALFSWAQKRL--DASFLPGSQMVFFVLNVVEAIGVLMTFK 478 (486)
Q Consensus 433 ~~~~~~~g~l~~~~~~~~--~~~~~~g~~~~f~~~~~~~~~~~~~~~~ 478 (486)
+++|.+.|.+.|...+.. ......||+..|.+.+++.+++.+..+.
T Consensus 400 ~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 447 (467)
T PRK09556 400 SFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAI 447 (467)
T ss_pred HHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998211100 0000127999999888888887666554
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=291.16 Aligned_cols=393 Identities=15% Similarity=0.127 Sum_probs=275.5
Q ss_pred hHHHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHH
Q 011424 41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA 120 (486)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~ 120 (486)
+......+..+...++...+.+.+|.+.+++|.+..+ .|++.+.+.+++.+++++.|+++||+|||+++.++.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~ 96 (434)
T PRK11663 23 HILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSD------IGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLI 96 (434)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHH
Confidence 3344556677777777888889999999999999998 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCcc
Q 011424 121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK 199 (486)
Q Consensus 121 ~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~ 199 (486)
+.+++.+++++++|++.+++.|++.|++.|...+. .+++.|++|+++|++++++.+.+.++|..++|.+++++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~---- 172 (434)
T PRK11663 97 ATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIAL---- 172 (434)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 99999999999999999999999999998877775 8999999999999999999999999999999999999987
Q ss_pred CCcccccccccccCCChhhHHHHHHHHHHH-HHHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCCCc-c-c
Q 011424 200 YPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATP-K-K 276 (486)
Q Consensus 200 ~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~ 276 (486)
.+|| |..+.+.++..++. ++..+++||+|++.+.++..+... +. ++. .++.+.+...... . .
T Consensus 173 ---~~gw---------~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~-~~~-~~~~~~~~~~~~~~~~~ 237 (434)
T PRK11663 173 ---HYGW---------RYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRH-DA-LEL-AQQQEGAGLSRKEILTK 237 (434)
T ss_pred ---cccH---------HHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccc-cc-ccc-chhccccCCChhhhHHH
Confidence 4444 44445655554443 344556787765432111100000 00 000 0000000000111 1 1
Q ss_pred ccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhh--hhH
Q 011424 277 SLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL--GPI 354 (486)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 354 (486)
..++++.++...+..++..........+.|.|+.+. +|++..+++...+...++++++++ ..+++.||+ ++|
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~g~s~~~a~~~~~~~~~~~~~g~~-~~g~l~dr~~~~~r 311 (434)
T PRK11663 238 YVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSET-----LGVDLVTANSAVSMFELGGFIGAL-VAGWGSDKLFNGNR 311 (434)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cCCCHHHHHHHHHHHHHHHHHHHH-HHhhhHHHhccCCc
Confidence 256778888777766666666666667778777543 689999999999999999999998 555556655 222
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHH
Q 011424 355 -MVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKA 433 (486)
Q Consensus 355 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ 433 (486)
................+..... . ... ......+..+++.............|..|++.|+++.|+.++..++|++
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~--~-~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ 387 (434)
T PRK11663 312 GPMNLIFAAGILLSVGSLWLMPF--A-SYV-MQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAA 387 (434)
T ss_pred cHHHHHHHHHHHHHHHHHHHccc--c-cHH-HHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHH
Confidence 2222211111111111111111 1 111 1111122222222222223345667888999999999999999999999
Q ss_pred HHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhc
Q 011424 434 AGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK 478 (486)
Q Consensus 434 ~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~ 478 (486)
++|.+.|++.|.. |+...|++.+++.+++.+..+.
T Consensus 388 ~~p~~~g~l~~~~----------g~~~~f~~~~~~~~~~~~~~~~ 422 (434)
T PRK11663 388 LSGYPLAKVLEIW----------HWTGFFVVISIAAGISALLLLP 422 (434)
T ss_pred HhcccHHHHHHhc----------ccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987 8999999999888888776665
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-36 Score=284.30 Aligned_cols=369 Identities=15% Similarity=0.110 Sum_probs=270.6
Q ss_pred hhHHHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHH
Q 011424 40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT 119 (486)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~ 119 (486)
+..++.+.+..+..........+.+|.+.+|+|.++++ .|++.+.+.+++.+++++.|+++||+|||+++..+.
T Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~------~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~ 81 (390)
T PRK03545 8 WLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQ------VGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLF 81 (390)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHH
Confidence 33455555555555455556677889999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCc
Q 011424 120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE 198 (486)
Q Consensus 120 ~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~ 198 (486)
++.+++++.+++++|++.++++|+++|++.+...+. .+++.|++|+++|++++++...+.++|..++|++++.+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~--- 158 (390)
T PRK03545 82 VLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQ--- 158 (390)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHH---
Confidence 999999999999999999999999999998887776 8999999999999999999999999999999999999987
Q ss_pred cCCcccccccccccCCChhhHHHHHHHHHHHH-HHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCCCcccc
Q 011424 199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKS 277 (486)
Q Consensus 199 ~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (486)
.+||| ..+.+.++..++.. .....+||++++++ + ..++.++
T Consensus 159 ----~~gw~---------~~f~~~~~~~~l~~~~~~~~~~~~~~~~~------~-------------------~~~~~~~ 200 (390)
T PRK03545 159 ----YLGWR---------TTFLAIGGGALITLLLLIKLLPLLPSEHS------G-------------------SLKSLPL 200 (390)
T ss_pred ----HhcHH---------HHHHHHHHHHHHHHHHHHHhCCCCCCCCc------c-------------------hHHHHHH
Confidence 44554 44466665555443 33344565432110 0 0012346
Q ss_pred cccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 011424 278 LLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVA 357 (486)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (486)
.+|+|.++......++..........+.+.++.+. .|++..+++......+++++++++ ..+++.||.+++...
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~g~s~~~~~~~~~~~~~~~~~g~~-~~g~l~dr~~~~~~~ 274 (390)
T PRK03545 201 LFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQV-----AGLSENFATLLLLLFGGAGIIGSV-LFSRLGNRHPSGFLL 274 (390)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCccHHHHHHHHHHHHHHHHHH-HHHHHhhccchhHHH
Confidence 78888877655555444444343444455454332 688899999999999999999988 556666676776543
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhh
Q 011424 358 RIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPA 437 (486)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~ 437 (486)
.+..+.......+.... . ..+ ...+..++.+.......+.......+..| +.+++++|+.+...++|..+||.
T Consensus 275 -~~~~~~~~~~~~l~~~~--~--~~~-~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~ 347 (390)
T PRK03545 275 -IAIALLLVCLLLLLPAA--N--SEW-HLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGAL 347 (390)
T ss_pred -HHHHHHHHHHHHHHHHh--c--hHH-HHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333322221111 1 111 22233333344444445556666777655 78999999999999999999999
Q ss_pred hHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhc
Q 011424 438 GGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK 478 (486)
Q Consensus 438 ~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~ 478 (486)
+.|.+.|.. |++..|.+.+++.+++.+..+.
T Consensus 348 ~~G~~~~~~----------g~~~~~~~~~~~~~~~~~~~~~ 378 (390)
T PRK03545 348 LGNQVSLHL----------GLSSIGYVGAALALAALVWSIL 378 (390)
T ss_pred HHHHHHhcc----------ChhHHHHHHHHHHHHHHHHHHH
Confidence 999999988 8999999999888888777765
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-36 Score=286.83 Aligned_cols=395 Identities=13% Similarity=0.063 Sum_probs=275.8
Q ss_pred CChhHHHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhH
Q 011424 38 LPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM 117 (486)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~ 117 (486)
.+|+....+++..++++++....+...|.+.+|+|.+..+ .|++.+++.+++.+++++.|+++||+|||+++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~------~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~ 78 (412)
T TIGR02332 5 LFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATM------FGLAATLFYAAYVICGIPSNIMLAIIGARRWIAG 78 (412)
T ss_pred ehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHH------HHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHH
Confidence 3556677888888999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhccc
Q 011424 118 GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP 196 (486)
Q Consensus 118 ~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~ 196 (486)
++++++++++++++++|++.+++.|+++|++.+...|. ..++.|++|+++|++++++++.+.++|..+++++++++.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~ 158 (412)
T TIGR02332 79 IMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILAL 158 (412)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999988886 78899999999999999999999999999999999988641
Q ss_pred CccCCcccccccccccCCChhhHHHHHHHHHHH-HHHHHhcCCcccCCCC-CCCcccchhhhccccc---cchhh--hcc
Q 011424 197 AEKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHND-DDDSCDVSYDALESAS---AEVKE--EEG 269 (486)
Q Consensus 197 ~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~--~~~ 269 (486)
.. .....| ||..+.+.++..++. .+..+++||+|++.+. .+++++...+..+... ++.++ .++
T Consensus 159 ~~-~~~~~g---------wr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (412)
T TIGR02332 159 DG-LMALKG---------WQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHA 228 (412)
T ss_pred CC-CCCccc---------hhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccc
Confidence 00 001234 455456666665554 4455677888754321 1111111101111000 00000 000
Q ss_pred cC--CCcccccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 011424 270 RE--ATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFL 347 (486)
Q Consensus 270 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (486)
+. ...+++++ ++.++...+.+++.......+..+.|.++.+. +.+++..+++.......++.+++.+ ..+++
T Consensus 229 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~----~~~~s~~~~~~~~~~~~l~~~~g~l-~~g~l 302 (412)
T TIGR02332 229 AMPQRSMLREIF-TPAIMLYTLAYFCLTNTLSAINIWTPQILQSF----NQGSSNIMIGLLAAIPQFCTIFGMI-WWSRH 302 (412)
T ss_pred cccHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCCcHHHhHHHhhHHHHHHHHHHH-HHHHH
Confidence 00 11123333 56777777777777777777778888887641 2467788889999999999999988 66777
Q ss_pred HHhhhhHHH-HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHH
Q 011424 348 ERILGPIMV-ARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMT 426 (486)
Q Consensus 348 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 426 (486)
.||+++|+. .........+.. .+... ... ...... ...+...+.....+.......|.+|++.|+++.|+.+.
T Consensus 303 ~dr~~~r~~~~~~~~~~~~~~~-~~~~~--~~~--~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~ 376 (412)
T TIGR02332 303 SDRLKERKHHTALPYLFAAAGW-LLASA--TDH--NLIQLL-GIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINA 376 (412)
T ss_pred hcccCccHHHHHHHHHHHHHHH-HHHHh--cCC--HHHHHH-HHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHH
Confidence 777776554 333322222222 11111 111 111111 11111111122233344555677899999999999999
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHH
Q 011424 427 GMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVE 469 (486)
Q Consensus 427 ~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~ 469 (486)
..++|++++|.+.|.+.|.. ++|...+.+++++.
T Consensus 377 ~~~~g~~~~p~~~g~i~~~~---------g~~~~~~~~~~~~~ 410 (412)
T TIGR02332 377 TGNIGSALSPFLIGILKDAT---------GSFNSGLWFVAALL 410 (412)
T ss_pred hhhhhhhhhhhhcccccccC---------CCCchhHHHHHHHH
Confidence 99999999999999999876 24777877766544
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=287.43 Aligned_cols=404 Identities=14% Similarity=0.098 Sum_probs=264.9
Q ss_pred hHHHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHH-HHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHH
Q 011424 41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGY-VGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT 119 (486)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~ 119 (486)
+.+....++.+++.++...+....|.+.++++.+.++.. +....+ +.++..+++.++++++|+++||+|||+++.+++
T Consensus 16 ~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~ 94 (490)
T PRK10642 16 KAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSV-QMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI 94 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 445677789999999999999999999999976553310 111111 257888999999999999999999999999999
Q ss_pred HHHHHHHHHHhccchHHH--------HHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhh
Q 011424 120 ASVVIFNTLFGLSVNFWM--------AVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG 190 (486)
Q Consensus 120 ~~~~~~~~~~~~a~~~~~--------l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~ 190 (486)
++++++++++++++|++. ++++|+++|++.|...+. .+++.|++|+++|+++.++...+..+|..+++.+.
T Consensus 95 ~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~ 174 (490)
T PRK10642 95 VIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVV 174 (490)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999875 899999999998888775 99999999999999999999988888988888776
Q ss_pred hhhcccCccCCcccccccccccCCChhhHHHHHHHHHHHHHHHHhcCCcccCCCCCCCcccchhhhccccccchhhhccc
Q 011424 191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGR 270 (486)
Q Consensus 191 ~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (486)
..+... .+-.. ...++||.++++..+++++.+++...+||+|++.+.+++.++.. ++. .+++
T Consensus 175 ~~~~~~-------~~~~~-~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~--------~~~--~~~~ 236 (490)
T PRK10642 175 VLISTI-------VGEAN-FLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGD--------REG--LQDG 236 (490)
T ss_pred HHHHHh-------cCHHH-hcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhc--------ccc--cccc
Confidence 555431 00000 01456677777776666655556667899876532211100000 000 0001
Q ss_pred CCCcccccccc-hhhHH-HHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011424 271 EATPKKSLLKN-WPLMS-SIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLE 348 (486)
Q Consensus 271 ~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (486)
+..++++++++ ++.+. .....++..........+.|.|+... +|++..+.++......++.+++.+ ..+++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~g~s~~~~~~~~~~~~~~~~~~~~-~~g~l~ 310 (490)
T PRK10642 237 PKVSFKEIATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHN-----LHYSEDHGVLIIIAIMIGMLFVQP-VMGLLS 310 (490)
T ss_pred ccCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 12234445543 22222 22222333344445556677766433 577777777777777788888877 566777
Q ss_pred HhhhhHHHHHHHHHHHHHHHHH-HHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHH
Q 011424 349 RILGPIMVARIAGVLTIPLLTS-YPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTG 427 (486)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 427 (486)
||+|||+.+..+.....+.... +..... . .. ..+.+..++.+++..........+..|.+|++.|+++.|+.+.+
T Consensus 311 dr~grr~~~~~~~~~~~~~~~~~~~~~~~-~--~~-~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~ 386 (490)
T PRK10642 311 DRFGRRPFVILGSVALFVLAIPAFILINS-N--VI-GLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNI 386 (490)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHhC-C--CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHH
Confidence 8889998877665543322222 211111 1 11 11222222222233333445556677889999999999987777
Q ss_pred HHHHHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhccccccC
Q 011424 428 MSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQR 484 (486)
Q Consensus 428 ~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 484 (486)
..+++.++|.+.+++.+... ++..++++..+..+++.+..++ .||+
T Consensus 387 ~~~~g~~~p~i~g~l~~~~~---------~~~~~~~~~~~~~~i~~~~~~~--~pes 432 (490)
T PRK10642 387 SVLVAGLTPTLAAWLVESTQ---------NLMMPAYYLMVVAVIGLITGVT--MKET 432 (490)
T ss_pred HHHHHHHHHHHHHHHHHHhC---------CchHHHHHHHHHHHHHHHHHHH--hccc
Confidence 88888999999999987651 2444555555555555555544 5664
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=282.50 Aligned_cols=387 Identities=12% Similarity=0.079 Sum_probs=257.3
Q ss_pred hHHHHHHHHHHHhhhhhhhhcccHHHHHHHhcc---cccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhH
Q 011424 41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQI---AKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM 117 (486)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~ 117 (486)
+.+....++.+++.++...+....|.+.++++. +..+ ....+.+.+...++..++++++|+++||+|||+++.+
T Consensus 22 ~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~ 98 (432)
T PRK10406 22 WAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQ---LLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLI 98 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 344456677889999999999999999999864 3332 0013334455556666999999999999999999999
Q ss_pred HHHHHHHHHHHHhccchHH--------HHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhh
Q 011424 118 GTASVVIFNTLFGLSVNFW--------MAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPA 188 (486)
Q Consensus 118 ~~~~~~~~~~~~~~a~~~~--------~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~ 188 (486)
++++++++++++++++++. .++++|+++|++.|...+. .+++.|++|+++|+++.+..+.+...|..+++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~ 178 (432)
T PRK10406 99 SVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALL 178 (432)
T ss_pred HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998874 6999999999999988886 999999999999999999998888888888887
Q ss_pred hhhhhcccCccCCcccccccccccCCChhhHHHHHHHHHHHHHHHHhcCCcccCCCCCCCcccchhhhccccccchhhhc
Q 011424 189 LGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEE 268 (486)
Q Consensus 189 l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (486)
+...+... .+.. ....++||.++.+.++++++.+.....+||++++++++
T Consensus 179 ~~~~~~~~-------~~~~-~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~~---------------------- 228 (432)
T PRK10406 179 VVVVLQQT-------LEDA-ELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETRA---------------------- 228 (432)
T ss_pred HHHHHHHh-------CCHH-HHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHhh----------------------
Confidence 76555431 0000 00145677777777777766655555667764321100
Q ss_pred ccCCCcccccccchhhHHHHHHHHHH-HhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 011424 269 GREATPKKSLLKNWPLMSSIIVYCVF-SLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFL 347 (486)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (486)
.++..+.++++++++.+...+...+. ......+..+.|.|+.+. +|++..+.+.......+...+++. ..+++
T Consensus 229 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~-----~g~s~~~~~~~~~i~~~~~~i~~~-~~G~l 302 (432)
T PRK10406 229 LKEAGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNT-----AGMHANVASGIMTAALFVFMLIQP-LIGAL 302 (432)
T ss_pred hcccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 00112456678888777655544432 444455666777776543 678888888888887888788877 44677
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHH
Q 011424 348 ERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTG 427 (486)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 427 (486)
.||.+||+.......+..+....+........ ...... ....+..+......+....+.+|.+|++.|+++.|+.+..
T Consensus 303 ~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~ 380 (432)
T PRK10406 303 SDKIGRRTSMLCFGSLAALFTVPILSALQNVS-SPYAAF-GLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAV 380 (432)
T ss_pred HHHcCchHHHHHHHHHHHHHHHHHHHHHHcCC-cHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHH
Confidence 77788888766654433322221111111111 111111 1111111122223345667788999999999999999988
Q ss_pred HHH-HHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhc
Q 011424 428 MSL-FKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK 478 (486)
Q Consensus 428 ~~~-g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~ 478 (486)
.+. .+...|.+.+. .+..+ .+...+++.+++.+++.+..++
T Consensus 381 g~~~~g~~~p~~~~~-l~~~g---------~~~~~~~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 381 ANALFGGSAEYVALS-LKSIG---------METAFFWYVTLMAVVAFLVSLM 422 (432)
T ss_pred HHHHHHhHHHHHHHH-HHHhC---------CCcHHHHHHHHHHHHHHHHHHH
Confidence 665 34557777774 45441 2555566666666666655554
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=285.21 Aligned_cols=387 Identities=17% Similarity=0.142 Sum_probs=280.7
Q ss_pred HHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHh
Q 011424 51 LCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFG 130 (486)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~ 130 (486)
++..++...+....|.+.+++|.++.+ .+++.+++.++..++.++.|+++||+|||+++.++.++.+++.++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~g~s~~~------~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~ 77 (399)
T TIGR00893 4 VINYLDRANLSFAAPMLQEDLGLSAAQ------YGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQA 77 (399)
T ss_pred hHHHHHHHhhhHhHHHHHHhhCCChhh------HHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHH
Confidence 456677788888899999999999999 99999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccCCcccccccc
Q 011424 131 LSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESL 209 (486)
Q Consensus 131 ~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~~~~gw~~~ 209 (486)
+++|++.++++|++.|++.+...+. .+++.|++|+|+|++++++.+...++|..++|.+++.+.+ ..+
T Consensus 78 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-------~~~---- 146 (399)
T TIGR00893 78 FAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILI-------HFS---- 146 (399)
T ss_pred HHcCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH-------hCC----
Confidence 9999999999999999998888886 9999999999999999999999999999999999999887 344
Q ss_pred cccCCChhhHHHHHHHHHHHHH-HHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCCCcccccccchhhHHHH
Q 011424 210 FGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSI 288 (486)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (486)
|+..+...++..++..+ ..+..||++++.+..+++.+....+....+.++++.+++.....++.+++|+++...
T Consensus 147 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (399)
T TIGR00893 147 -----WQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLA 221 (399)
T ss_pred -----chHHHHHHHHHHHHHHHHhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHH
Confidence 44444666555555433 344556655432221111111000000000011111222334566788999998888
Q ss_pred HHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHH-
Q 011424 289 IVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIM--VARIAGVLTI- 365 (486)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~- 365 (486)
+..++.......+..+.+.|..+. .|.+..+.+.......++.+++.+ ..+++.||.++|+ ..........
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~ 295 (399)
T TIGR00893 222 LGQFLVNIGLGFFLTWFPTYLVQE-----RGLSILEAGFMASLPGIVGFIGMI-LGGRLSDLLLRRGKSLVFARKTAIIA 295 (399)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHH-----hcccHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHhhcccchhHHHHHHHHH
Confidence 888887777777777888777654 688888999999999999999988 5556666667764 1111111111
Q ss_pred -HHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHH
Q 011424 366 -PLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFS 444 (486)
Q Consensus 366 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 444 (486)
+........... . ... ...+.....+.+..+..+....+..|.+|++.|+++.|+.+...++|+.++|.+.|.+.+
T Consensus 296 ~~~~~~~~~~~~~-~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~ 372 (399)
T TIGR00893 296 GLVLSLLMFATNY-V-NIP-YAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAA 372 (399)
T ss_pred HHHHHHHHHHhcc-c-hhH-HHHHHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhcc
Confidence 111111111110 1 111 111222222333334678888999999999999999999999999999999999999998
Q ss_pred HHhhhcCCCCCCc-hhHHHHHHHHHHHHHHHHhhc
Q 011424 445 WAQKRLDASFLPG-SQMVFFVLNVVEAIGVLMTFK 478 (486)
Q Consensus 445 ~~~~~~~~~~~~g-~~~~f~~~~~~~~~~~~~~~~ 478 (486)
.. | +...|.+.+++.+++.+..+.
T Consensus 373 ~~----------g~~~~~~~~~~~~~~~~~~~~~~ 397 (399)
T TIGR00893 373 TT----------GSFAGALMVVAALALIGALSYLL 397 (399)
T ss_pred CC----------CchhHHHHHHHHHHHHHHHHHHH
Confidence 76 5 888888888887777666543
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=283.66 Aligned_cols=375 Identities=15% Similarity=0.085 Sum_probs=281.1
Q ss_pred hhHHHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHH
Q 011424 40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT 119 (486)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~ 119 (486)
+..+..+.++.++..++.++++..+|.+.+|+|.+.++ .+|+.+.|.++..++++++|+++||+|||++++++.
T Consensus 5 ~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~------~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~ 78 (495)
T PRK14995 5 WLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNE------LLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGG 78 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 44566888899999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhc-cchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccC
Q 011424 120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIF-REEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA 197 (486)
Q Consensus 120 ~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~ 197 (486)
+++.++++++++++|++.++++|+++|++.+...+. ...+.+.+ |+++|++++++.....++|..+||.+++++.+
T Consensus 79 ~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~-- 156 (495)
T PRK14995 79 TLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLE-- 156 (495)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--
Confidence 999999999999999999999999999998888775 67776665 78999999999999999999999999999998
Q ss_pred ccCCcccccccccccCCChhhHHHHHHHHHHH-HHHHHhcCCcccCCCCCCCcccchh------------hhccccc-cc
Q 011424 198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSY------------DALESAS-AE 263 (486)
Q Consensus 198 ~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~------------~~~~~~~-~~ 263 (486)
++|||+.| ++.....++. ++..+.+||++++++++.+...... +...+.. ..
T Consensus 157 -----~~gwr~~f---------~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 222 (495)
T PRK14995 157 -----HFYWGSVF---------LINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSL 222 (495)
T ss_pred -----cCChHHHH---------HHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCch
Confidence 55665544 5554444443 3445567776543222211111000 0000000 00
Q ss_pred ------------------hhhhcccCCCcccccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchh
Q 011424 264 ------------------VKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMV 325 (486)
Q Consensus 264 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 325 (486)
..|.+.+++....+++|+|.+....+..++......+...++|.|++.. +|+++.++
T Consensus 223 ~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v-----~g~s~~~a 297 (495)
T PRK14995 223 WVTSLTLLTGALLLGLFIRTQLAASRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFV-----HGLSPLEA 297 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCHHHH
Confidence 0112223333445788999887777776666666566666777776655 69999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhh
Q 011424 326 GEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLF 405 (486)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (486)
|+...+..++..++.+ +.+++.||.++|+.+..+..+..++...+....... ..+. .....++.+++.+...+...
T Consensus 298 g~~~~~~~~~~~~~~~-~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~--~~~~-~~~~~~l~G~g~g~~~~~~~ 373 (495)
T PRK14995 298 GMFMLPVMVASGFSGP-IAGILVSRLGLRLVATGGMALSALSFYGLAMTDFST--QQWQ-AWGLMALLGFSAASALLAST 373 (495)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCC--chHH-HHHHHHHHHHhHHHHHHHHH
Confidence 9999999999999988 556666777888888777766665555444332211 1221 22333444555555566666
Q ss_pred hhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHH
Q 011424 406 ILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSW 445 (486)
Q Consensus 406 ~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 445 (486)
....+.+|+++++.+.++.++..++|+.+|+.+.|.+++.
T Consensus 374 ~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 374 SAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred HHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777789999999999999999999999999999999875
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=281.25 Aligned_cols=378 Identities=18% Similarity=0.110 Sum_probs=274.7
Q ss_pred CChhHHHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhH
Q 011424 38 LPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM 117 (486)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~ 117 (486)
+++......+...+++.++....++..|.+.+|+|.++++ .+++.+.+.++..+++++.|+++||+|||+++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 85 (406)
T PRK11551 12 RLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQ------MGWAFSAGILGLLPGALLGGRLADRIGRKRILIV 85 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHH
Confidence 4445566777788889999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhccc
Q 011424 118 GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP 196 (486)
Q Consensus 118 ~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~ 196 (486)
+.++..++.+++++++|++.+++.|+++|++.+...+. .+++.|++|+++|++++++.+.+..+|..+++.+++.+.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~- 164 (406)
T PRK11551 86 SVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAG- 164 (406)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-
Confidence 99999999999999999999999999999998888776 8999999999999999999999999999999999988877
Q ss_pred CccCCcccccccccccCCChhhHHHHHHHHHHH-HHHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCCCcc
Q 011424 197 AEKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPK 275 (486)
Q Consensus 197 ~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (486)
.+ +|+..+.+.++..++. .+...++||++++.++++++++. ....
T Consensus 165 ------~~---------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------------------~~~~ 210 (406)
T PRK11551 165 ------DA---------AWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQR-------------------APVL 210 (406)
T ss_pred ------cc---------CHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhh-------------------hhhH
Confidence 33 4444445555444443 33455678876543221110000 0000
Q ss_pred ccccc---chhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011424 276 KSLLK---NWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG 352 (486)
Q Consensus 276 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (486)
+..++ ++..+......++..........+.|.+..+ .|++..+.+.......++.+++++ ..+++.||.+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~------~g~s~~~~~~~~~~~~~~~~~~~~-~~g~l~dr~g 283 (406)
T PRK11551 211 RALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVG------QGLSRSQAGLVQIAFNIGGALGSL-LIGALMDRLR 283 (406)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCChhhhhHHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence 11111 1222223333333333333444455665543 588899999999999999999988 5556667778
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHH
Q 011424 353 PIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFK 432 (486)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~ 432 (486)
+++.+..+.....++...+.... ..+ ...+..++.+++..+..+....+..|.+|+++|+++.|+.+....++.
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~ 357 (406)
T PRK11551 284 PRRVVLLIYAGILASLAALAAAP-----SFA-GMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGS 357 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-----cHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHH
Confidence 88887765554444444333221 111 222333444445555667778888999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhc
Q 011424 433 AAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK 478 (486)
Q Consensus 433 ~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~ 478 (486)
.++|.+.|.+.+.. .++...++....+.+++.+..++
T Consensus 358 ~~g~~~~g~l~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 394 (406)
T PRK11551 358 MAGPLLAGQLLALG---------RSTVGVIGASIPVILVAALAALL 394 (406)
T ss_pred HHHhhhHhhhhccC---------CchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998864 14555666666566555555544
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=273.74 Aligned_cols=358 Identities=13% Similarity=0.058 Sum_probs=264.3
Q ss_pred hhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHhccchHHH
Q 011424 58 SSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWM 137 (486)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~ 137 (486)
....+.+|.+.+|+|.|.++ .+++.+.+.+++.+++++.|+++||+|||+++..+..+++++.+++++++|++.
T Consensus 26 ~~~~~~lp~i~~~~~~s~~~------~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ 99 (393)
T PRK09705 26 TSVGPLLPQLRQASGMSFSV------AALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSAL 99 (393)
T ss_pred hccchhHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHH
Confidence 67889999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccCCccc-ccccccccCCC
Q 011424 138 AVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLF-SSESLFGKFPY 215 (486)
Q Consensus 138 l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~~~~-gw~~~~~~~~~ 215 (486)
++++|+++|++.+...+. .+++.|++| ++|+++++.+..+..+|..+++.+++++.+ +. +||..+
T Consensus 100 ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~-------~~~~w~~~~----- 166 (393)
T PRK09705 100 LLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQ-------HSETWYQTL----- 166 (393)
T ss_pred HHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCCHHHHH-----
Confidence 999999999998887776 888999987 789999999999999999999999998887 32 454433
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCCCcccccccchhhHHHHHHHHHHH
Q 011424 216 FLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFS 295 (486)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (486)
...++..++.+...+...+..++.+++ + +...++.+++++.+...+..++..
T Consensus 167 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~---~~~~~~~l~~~~~~~l~~~~~~~~ 218 (393)
T PRK09705 167 ----AWWALPAVVALFAWWWQSAREVASSHK---------------------T---TTTPVRVVFTPRAWTLGVYFGLIN 218 (393)
T ss_pred ----HHHHHHHHHHHHHHHHHhcCCCccccC---------------------C---CcCCcccccCHhHHHHHHHHHHHH
Confidence 333333333332222222211110000 0 011234566777776666666666
Q ss_pred hhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 011424 296 LHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIA 375 (486)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (486)
........+.|.++.+ +|.+..+++.......++.+++++ ..+++.||.++++....+..+..++...+....
T Consensus 219 ~~~~~~~~~lp~~l~~------~g~s~~~ag~~~~~~~i~~i~g~~-~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~ 291 (393)
T PRK09705 219 GGYASLIAWLPAFYIE------IGASAQYSGSLLALMTLGQAAGAL-LMPAMARHQDRRKLLMLALVLQLVGFCGFIWLP 291 (393)
T ss_pred HHHHHHHHHHHHHHHH------cCCChhhhhHHHHHHHHHHHHHHH-HHHHHHhhccchHHHHHHHHHHHHHHHHHHHcc
Confidence 5656666677777643 588999999999999999999998 666788888988888777666555554443222
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcc-ccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCCC
Q 011424 376 MLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAV-DQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASF 454 (486)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~ 454 (486)
. .... .. . .+.+.......+.......+.. |++.+++..|+.+...++++.++|.+.|++.|..+
T Consensus 292 ~---~~~~-~~-~--~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g------- 357 (393)
T PRK09705 292 L---QLPV-LW-A--MVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG------- 357 (393)
T ss_pred c---hHHH-HH-H--HHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------
Confidence 1 1111 11 1 1122233344455544444555 46789999999999999999999999999999872
Q ss_pred CCchhHHHHHHHHHHHHHHHHhhccccccCCC
Q 011424 455 LPGSQMVFFVLNVVEAIGVLMTFKPFLAQRHD 486 (486)
Q Consensus 455 ~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 486 (486)
++...|.+.++++++..+..+. ..||++|
T Consensus 358 --~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 386 (393)
T PRK09705 358 --NYLMDWAFHALCVVGLMIITLR-FAPARFP 386 (393)
T ss_pred --CchHHHHHHHHHHHHHHHHHHH-hcccccc
Confidence 4777888877777777666655 5777654
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=280.42 Aligned_cols=365 Identities=15% Similarity=0.199 Sum_probs=260.1
Q ss_pred ChhHHHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHH
Q 011424 39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG 118 (486)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~ 118 (486)
+++.+...++..+.+.++.....+..|.+.+++|.++.+ .+++.+++.+++.+++++.|+++||+|||+++.++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~------~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~ 89 (426)
T PRK12307 16 QKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDME------GAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWS 89 (426)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence 345567778888888999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccC
Q 011424 119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA 197 (486)
Q Consensus 119 ~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~ 197 (486)
.++.+++.++++++++++.++++|+++|++.+...+. ..++.|++|+|+|+++.++...+.++|.++++.+.+.+.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~-- 167 (426)
T PRK12307 90 IVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAE-- 167 (426)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcc--
Confidence 9999999999999999999999999999998887775 8999999999999999999999999999999999988887
Q ss_pred ccCCcccccccccccCCChhhHHHHHHHHHHHHHHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCCCcccc
Q 011424 198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKS 277 (486)
Q Consensus 198 ~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (486)
.+|||+ .+.+..+..++.+......||++++.+++.++.+ ++.++..+......++
T Consensus 168 -----~~~w~~---------~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~ 223 (426)
T PRK12307 168 -----AYGWRA---------AFFVGLLPVLLVIYIRARAPESKEWEEAKLSGKG----------KHSQSAWSVFSLSMKG 223 (426)
T ss_pred -----cCCHHH---------HHHHHHHHHHHHHHHHHHCCCChHHHHhhhhccc----------cccccchhhhhHHHHH
Confidence 445544 4444433333322223334554332111100000 0000000011124566
Q ss_pred cccchhhHHHHHHHHHHH---hhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 011424 278 LLKNWPLMSSIIVYCVFS---LHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPI 354 (486)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (486)
+++++.++.......... ........+.|.|..+ .|+++.+.+.......++.+++++ ..+++.||++||
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~g~~-~~g~l~dr~~~~ 296 (426)
T PRK12307 224 LFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAG------EGFDTGVVSNLMTAAAFGTVLGNI-VWGLCADRIGLK 296 (426)
T ss_pred HHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccH
Confidence 778877765443332222 1222244456666543 478888899988888999999988 566677778998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHH
Q 011424 355 MVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAA 434 (486)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~ 434 (486)
+....+..+..+....+..... . .........+..+....+..+....++.|.+|++.||++.|+.+...++++.+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~ 372 (426)
T PRK12307 297 KTFSIGLLMSFLFIFPLFRIPQ--D--NYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTF 372 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc--c--cHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHH
Confidence 8877776665544433322211 1 11111111111111222333445567789999999999999999999999999
Q ss_pred HhhhHHHHHHHH
Q 011424 435 GPAGGGALFSWA 446 (486)
Q Consensus 435 ~~~~~g~l~~~~ 446 (486)
+|.+.|++.+..
T Consensus 373 gp~~~g~l~~~~ 384 (426)
T PRK12307 373 NSMAATWLGITM 384 (426)
T ss_pred HHHHHHHHHHcc
Confidence 999999999877
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-34 Score=270.68 Aligned_cols=367 Identities=17% Similarity=0.168 Sum_probs=264.0
Q ss_pred ChhHHHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHH
Q 011424 39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG 118 (486)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~ 118 (486)
.|+.+..+....+..........+.+|.+.+|+|.++++ .++..+++.++..+++++.|+++||+|||++++.+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~ 91 (394)
T PRK10213 18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGV------AGQSVTVTAFVAMFASLFITQTIQATDRRYVVILF 91 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHH
Confidence 445555555555555555556677889999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccC
Q 011424 119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA 197 (486)
Q Consensus 119 ~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~ 197 (486)
.++.+++.+++++++|++.+++.|+++|++.+...+. .+++.|++|+|+|++++++...+.++|..++|++++.+.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~-- 169 (394)
T PRK10213 92 AVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGE-- 169 (394)
T ss_pred HHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 9999999999999999999999999999998888886 8999999999999999999999999999999999999998
Q ss_pred ccCCcccccccccccCCChhhHHHHHHHHHHHHHH-HHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCCCccc
Q 011424 198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKK 276 (486)
Q Consensus 198 ~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (486)
.+|||+. +.+.++.+++..+. ...+||+++++++ .....+
T Consensus 170 -----~~gw~~~---------f~~~~~l~~~~~l~~~~~~p~~~~~~~~-------------------------~~~~~~ 210 (394)
T PRK10213 170 -----LIGWRNV---------FNAAAVMGVLCIFWIIKSLPSLPGEPSH-------------------------QKQNTF 210 (394)
T ss_pred -----hcCHHHH---------HHHHHHHHHHHHHHHHHHCCCCCccccc-------------------------chhHHH
Confidence 4555544 45555544443332 3345664321100 001234
Q ss_pred ccccchhhHHHHHHHHHHHhhhhhhhHHH-HHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 011424 277 SLLKNWPLMSSIIVYCVFSLHDMAYSEIF-SLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIM 355 (486)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (486)
+.+++|.++...+..++..........+. |.+.. ++|+++.+.+......+++.+++.. ..+++.||.+ ++
T Consensus 211 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~------~~g~s~~~~g~~~~~~~~~~iig~~-~~~~l~~r~~-~~ 282 (394)
T PRK10213 211 RLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMN------LAGFGVDGLTLVLLSFGIASFVGTS-LSSFILKRSV-KL 282 (394)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hcCCChhHHHHHHHHHHHHHHHHHH-HHHHHHhccc-hh
Confidence 57788888876665555544444444444 43432 2688999999999999999999987 5555555534 34
Q ss_pred HHHHHHHHHHHH-HHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHH
Q 011424 356 VARIAGVLTIPL-LTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAA 434 (486)
Q Consensus 356 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~ 434 (486)
.......+.... ..+..... ..+ ......++.+++.....+...+.+++..| ++++++.++.....++|..+
T Consensus 283 ~l~~~~~~~~~~~~~l~~~~~-----~~~-~~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~ 355 (394)
T PRK10213 283 ALAGAPLVLAVSALVLTLWGS-----DKI-VATGVAIIWGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTC 355 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-----hHH-HHHHHHHHHHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHH
Confidence 333333332222 22222211 122 22233344444555566667767777777 56778888888888999999
Q ss_pred HhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhh
Q 011424 435 GPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTF 477 (486)
Q Consensus 435 ~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~ 477 (486)
||.+.|.++|.. |+...+...+++.++..+...
T Consensus 356 G~~l~G~l~~~~----------g~~~~~~~~~~~~~~~~~~~~ 388 (394)
T PRK10213 356 GAAIGGYALDNI----------GLTSPLMLSGTLMLLTALLVT 388 (394)
T ss_pred HHHHHHHHHhcc----------ChhhHHHHHHHHHHHHHHHHH
Confidence 999999999977 777788777766655555443
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-34 Score=274.43 Aligned_cols=400 Identities=14% Similarity=0.102 Sum_probs=265.4
Q ss_pred hHHHHHHHHHHHhhhhhhhhcccHHH-HHHHh--cccccchhhhhH-hHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhh
Q 011424 41 TELFSIWIIVLCTALPISSLFPFLYF-MIKDF--QIAKREEDIGSY-AGYVGSSFMFGRALTSVFWGLVADRYGRKPVII 116 (486)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~-~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~ 116 (486)
+......++.+++.++...+..+.|. +.+++ +.++.+ ... .....++.+++..+++++.|+++||+|||+++.
T Consensus 22 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~ 98 (438)
T PRK09952 22 RAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM---GTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLM 98 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH---HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHH
Confidence 44567777889999999998888875 45555 555442 111 112234566778899999999999999999999
Q ss_pred HHHHHHHHHHHHHhccchHH--------HHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHh
Q 011424 117 MGTASVVIFNTLFGLSVNFW--------MAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGP 187 (486)
Q Consensus 117 ~~~~~~~~~~~~~~~a~~~~--------~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~ 187 (486)
.+.++++++++++++++|++ .++++|+++|++.|...+. ..++.|++|+++|++..+..+.+..+|.++++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~ 178 (438)
T PRK09952 99 LTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLST 178 (438)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987 5889999999999988775 89999999999999999999999999999998
Q ss_pred hhhhhhcccCccCCcccccccccccCCChhhHHHHHHHHHHHHHHHHhcCCcccCCCCCCCcccchhhhccccccchhhh
Q 011424 188 ALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEE 267 (486)
Q Consensus 188 ~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (486)
.+...+... .+- ..+..++||.++++.+++.++........||++++.+.+++.++
T Consensus 179 ~~~~~l~~~-------~~~-~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~---------------- 234 (438)
T PRK09952 179 GLVSLISMM-------TTD-EQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAA---------------- 234 (438)
T ss_pred HHHHHHHHh-------CCH-HHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhccc----------------
Confidence 887776541 110 00114567777777776665544444556777643221110000
Q ss_pred cccCCCcccccccchhhHHHHH-HHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHH
Q 011424 268 EGREATPKKSLLKNWPLMSSII-VYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPF 346 (486)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (486)
++++....+.++++|+.+.... ..++..........+.+.|..+. +|++...........++...++.+ ..++
T Consensus 235 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~-----~g~s~~~~~~~~~~~g~~~~i~~~-~~g~ 308 (438)
T PRK09952 235 AKKRIPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQN-----LGLPRELFLNIGLLVGGLSCLTIP-CFAW 308 (438)
T ss_pred ccccCCHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 0000111223556666655443 33333334444555666665443 566666555555555666667766 5677
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHH
Q 011424 347 LERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMT 426 (486)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 426 (486)
+.||++||+....+..+..++...+...... . ..........++.++......+..+.+..|.+|++.|+++.|+.+.
T Consensus 309 l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~ 386 (438)
T PRK09952 309 LADRFGRRRVYITGALIGTLSAFPFFMALEA-Q-SIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQ 386 (438)
T ss_pred HHHHhCchHHHHHHHHHHHHHHHHHHHHHHc-C-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHH
Confidence 7788899888777665544433222221111 1 1111222222333344444566678889999999999999999776
Q ss_pred HH-HHHHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhccccccCC
Q 011424 427 GM-SLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQRH 485 (486)
Q Consensus 427 ~~-~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 485 (486)
.. .+++.++|.+.+++.+...+ +|...+...+++.+++.+..+. .+|++
T Consensus 387 ~~~~lgg~~~p~i~g~l~~~~~~--------~~~~~~~~~~~~~~i~~v~~~~--~~~~~ 436 (438)
T PRK09952 387 VASVVGGGFTPFIAAALVTYFGG--------SWHSVAIYLLAGCLISAMTALL--MKDNQ 436 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC--------CchHHHHHHHHHHHHHHHHHHH--ccccc
Confidence 65 48999999999999886411 3667777777777877777665 55554
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=277.19 Aligned_cols=378 Identities=15% Similarity=0.158 Sum_probs=265.6
Q ss_pred CCChhHHHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhh
Q 011424 37 GLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII 116 (486)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~ 116 (486)
+.+++.+...++..+.+.++.....+..|.+.+++|.++.+ .+++.+++.++..+++++.|+++||+|||++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~------~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~ 81 (405)
T TIGR00891 8 RAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVD------AASLISAALISRWFGALMFGLWGDRYGRRLPMV 81 (405)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhh------HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 44566677889999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcc
Q 011424 117 MGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (486)
Q Consensus 117 ~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~ 195 (486)
++.++.+++.++++++++++.+++.|++.|++.+...+. .+++.|++|+++|++++++.+.+..+|..+++.+++.+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~ 161 (405)
T TIGR00891 82 TSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVP 161 (405)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998888775 9999999999999999999999999999999999999887
Q ss_pred cCccCCcccccccccccCCChhhHHHHHHHHHHHHHHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcc---cCC
Q 011424 196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEG---REA 272 (486)
Q Consensus 196 ~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 272 (486)
..+ .+||..+.+..+..++.++....+||+++++++++++++ ..+..++..+++...+. +..
T Consensus 162 -------~~~-------~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 226 (405)
T TIGR00891 162 -------VWG-------DGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKAL-VRTMVDILYGGEHRIANIVMTLA 226 (405)
T ss_pred -------hcC-------ccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhh-hhhHHHHHhccchhhhhhhhhhh
Confidence 222 125555566655555555556667886543222111110 00000000000000000 000
Q ss_pred Ccccccc-cchh-hHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011424 273 TPKKSLL-KNWP-LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI 350 (486)
Q Consensus 273 ~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (486)
...++.. +++. +...................++|.|+.+. +|++..+.+.+.....++.+++.+ ..+++.||
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~~~~~~~~~~~~~~g~~-~~g~l~dr 300 (405)
T TIGR00891 227 AAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKAD-----LGLSPHTVANIVVFSNIGAIVGGC-VFGFLGDW 300 (405)
T ss_pred HHhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 0011111 1111 11122222222222233444555555433 688999999999999999999988 56667777
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHH
Q 011424 351 LGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSL 430 (486)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 430 (486)
+++|+.+..+.....+........ ....+ ...+...+.+.+..+..+.......|.+|+++|++++|+.+...++
T Consensus 301 ~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 375 (405)
T TIGR00891 301 LGRRKAYVCSLLAGQLLIIPVFAI----GANVA-VLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNL 375 (405)
T ss_pred hCchhhhHHHHHHHHHHHHHHHHh----CCchH-HHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHH
Confidence 898888776665443222222111 11111 1222223333444455566677888999999999999999999999
Q ss_pred HHHHHhhhHHHHHHHH
Q 011424 431 FKAAGPAGGGALFSWA 446 (486)
Q Consensus 431 g~~~~~~~~g~l~~~~ 446 (486)
++.++|.+.|.+.|..
T Consensus 376 g~~~g~~~~g~l~~~~ 391 (405)
T TIGR00891 376 GGALAPIIGALLAQRL 391 (405)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999999987
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=286.43 Aligned_cols=400 Identities=17% Similarity=0.133 Sum_probs=273.5
Q ss_pred HHHHHHHhhhhhhhhcccHHHHHHHhccc--------ccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhH
Q 011424 46 IWIIVLCTALPISSLFPFLYFMIKDFQIA--------KREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM 117 (486)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~ 117 (486)
+.++.++..++...+.+..|.+.++++.+ ..+ .+++.+++.++..++++++|+++||+|||+++++
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~ 106 (481)
T TIGR00879 33 AAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSL------WGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLI 106 (481)
T ss_pred HHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhH------HHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHH
Confidence 44455666777888888899888888877 556 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc---chHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhh---
Q 011424 118 GTASVVIFNTLFGLS---VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG--- 190 (486)
Q Consensus 118 ~~~~~~~~~~~~~~a---~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~--- 190 (486)
+.++..++.+++.++ .+++.+++.|+++|++.+...+. .+++.|++|+++|++++++.+.+..+|..+++.++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~ 186 (481)
T TIGR00879 107 IALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGK 186 (481)
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 999999999888553 45668999999999998888776 89999999999999999999999999999999998
Q ss_pred hhhcccCccCCcccccccccccCCChhhHHHHHHHHHHHHHHHHhcCCcccCCCCCCCcccc--hhhhccc-cccch---
Q 011424 191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDV--SYDALES-ASAEV--- 264 (486)
Q Consensus 191 ~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~--~~~~~~~-~~~~~--- 264 (486)
....+ ..+||..+.+.++..++.++..+++||++++...+++.++. ..++..+ ..++.
T Consensus 187 ~~~~~----------------~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (481)
T TIGR00879 187 VSLNN----------------TLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELL 250 (481)
T ss_pred hcCCC----------------CccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHH
Confidence 54444 34455555666666666666677789886532111111110 0000000 00000
Q ss_pred ----------hhhcccCCCccccccc------chhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHH
Q 011424 265 ----------KEEEGREATPKKSLLK------NWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEV 328 (486)
Q Consensus 265 ----------~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 328 (486)
..+++.....+++.++ .+.++...+..+...........+.+.+.. +.|++..+.+..
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~ 324 (481)
T TIGR00879 251 DELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFE------NAGVSTDHAFLV 324 (481)
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHH------HcCCCchHHHHH
Confidence 0000000111222222 122222222222222222223333343332 258888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh-----hHHHHHHHHHHHHhhhhhhhhhh
Q 011424 329 LAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGF-----GLAFLLNCASVVKNLLSVSIITG 403 (486)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 403 (486)
.....++.+++.+ ..+++.||.+||+....+..+..++...+.+....... ..+.......+....+..+..+.
T Consensus 325 ~~~~~~~~~~~~~-~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (481)
T TIGR00879 325 SIIVGAVNFAFTF-VAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPV 403 (481)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCe
Confidence 8888899999988 56777777899988887776666665555432211111 02222233333333444455566
Q ss_pred hhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhcccccc
Q 011424 404 LFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQ 483 (486)
Q Consensus 404 ~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~ 483 (486)
...+..|.+|++.|+++.|+.+...+++++++|.+.+.+.+.. ++...|++.+++++++.+..++ ..||
T Consensus 404 ~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~----------~~~~~f~~~~~~~~~~~i~~~~-~~~~ 472 (481)
T TIGR00879 404 PWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESI----------GVGGVFIFFGGLNVLGLIFVYF-FLPE 472 (481)
T ss_pred ehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CccceehhHHHHHHHHHHHHhe-eccc
Confidence 7778899999999999999999999999999999999999876 7888888888888888777766 4565
Q ss_pred CC
Q 011424 484 RH 485 (486)
Q Consensus 484 ~~ 485 (486)
++
T Consensus 473 ~~ 474 (481)
T TIGR00879 473 TK 474 (481)
T ss_pred CC
Confidence 44
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=284.23 Aligned_cols=429 Identities=13% Similarity=0.104 Sum_probs=273.5
Q ss_pred hHHHHHHHHHHHhhhhhhhhcccHHHHHHHhc-----ccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhh
Q 011424 41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQ-----IAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVI 115 (486)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l 115 (486)
+.+..+.++.+.++++....+...|.+.+++. .+..+ .+++.+.+.++..++++++|+++||+|||+++
T Consensus 16 ~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~ 89 (502)
T TIGR00887 16 RAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSV------SAAVNGSASIGTLAGQLFFGWLADKLGRKRVY 89 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHH------HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHH
Confidence 44556777888899999999999988876532 22333 78999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhccch------HHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhh
Q 011424 116 IMGTASVVIFNTLFGLSVN------FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPA 188 (486)
Q Consensus 116 ~~~~~~~~~~~~~~~~a~~------~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~ 188 (486)
.++.++..++.++++++++ ++.++++|+++|++.|...+. ..++.|++|+++|++++++.+....+|..+++.
T Consensus 90 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~ 169 (502)
T TIGR00887 90 GMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAI 169 (502)
T ss_pred HHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888765 789999999999999988775 999999999999999999999999999999999
Q ss_pred hhhhhcccCcc-CCcccc-----cccc-cccCCChhhHHHHHHHHHHHHHHHHhcCCcccCCCCCCCccc---chhhhcc
Q 011424 189 LGGFLAQPAEK-YPNLFS-----SESL-FGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCD---VSYDALE 258 (486)
Q Consensus 189 l~~~l~~~~~~-~~~~~g-----w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~---~~~~~~~ 258 (486)
++.++...... ....-+ ++.. ...++||.++.+.++++++.++..+++||+|++...++++++ +...+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~ 249 (502)
T TIGR00887 170 VALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVL 249 (502)
T ss_pred HHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHh
Confidence 98876531100 000000 0000 113578988888888888877788899999997433222211 1111110
Q ss_pred c-c---ccch-h--h-hcccCCCcccccccc---hhhHHHHHH----HHHHHhhhhhhhHHHHHhhcCccccCccccccc
Q 011424 259 S-A---SAEV-K--E-EEGREATPKKSLLKN---WPLMSSIIV----YCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQ 323 (486)
Q Consensus 259 ~-~---~~~~-~--~-~~~~~~~~~~~~~~~---~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 323 (486)
+ + ..++ + + +++....++++++++ ++.++..+. .+......++...+.|.++. +.|++..
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~------~~G~~~~ 323 (502)
T TIGR00887 250 QVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILS------AIGYSPP 323 (502)
T ss_pred ccccccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHH------HHcCCCC
Confidence 0 0 0000 0 0 001111245566653 222222211 11111112222222333332 2455443
Q ss_pred hhHH------------HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 011424 324 MVGE------------VLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASV 391 (486)
Q Consensus 324 ~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (486)
+.+. ......++.+++.+ +..++.||.|||+.+..+..+..++..++........... ......+
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~-~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~ 400 (502)
T TIGR00887 324 AATNNAYEELYKTAVGNLIIALAGTVPGYW-VTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHG--FLAIYVL 400 (502)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhH--HHHHHHH
Confidence 2211 12233344555555 6677788889999888777666665555443321111111 1111111
Q ss_pred HHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHH
Q 011424 392 VKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAI 471 (486)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~ 471 (486)
...++..+..+..+.+..|.+|++.|+++.|+.+.+++++++++|.+.+.+.+..+...+.....++...|+++++++++
T Consensus 401 ~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 480 (502)
T TIGR00887 401 AQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFL 480 (502)
T ss_pred HHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHH
Confidence 12223344556677788999999999999999999999999999999999987431110000001455678888888887
Q ss_pred HHHHhhccccccCCC
Q 011424 472 GVLMTFKPFLAQRHD 486 (486)
Q Consensus 472 ~~~~~~~~~~~~~~~ 486 (486)
+.++.+ ++||+++
T Consensus 481 ~~i~~~--~lpEt~~ 493 (502)
T TIGR00887 481 GILFTL--LIPETKG 493 (502)
T ss_pred HHHHhe--EeccCCC
Confidence 766554 4788763
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=274.26 Aligned_cols=359 Identities=13% Similarity=0.092 Sum_probs=263.2
Q ss_pred hhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHhcc
Q 011424 53 TALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS 132 (486)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a 132 (486)
.........+..|.+.+++|.++.+ .+++.+++.+++.+++++.|+++||+|||+++.++.++.+++.++++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~s~~~------~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~ 88 (377)
T TIGR00890 15 TSGYVYTWTLLAPPLGRYFGVGVTA------VAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIA 88 (377)
T ss_pred HhhHHhhhhhHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHH
Confidence 3334567788899999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccCCcccccccccc
Q 011424 133 VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFG 211 (486)
Q Consensus 133 ~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~~~~gw~~~~~ 211 (486)
+|++.++++|++.|++.+...+. ...+.|++| |+|+++.++...+.++|..+++++.+.+.+
T Consensus 89 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---------------- 151 (377)
T TIGR00890 89 DSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVIN---------------- 151 (377)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHh----------------
Confidence 99999999999999998876664 777888887 579999999999999999887777777766
Q ss_pred cCCChhhHHHHHHHHHHHHHH-HHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCCCcccccccchhhHHHHHH
Q 011424 212 KFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIV 290 (486)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (486)
.++||..+.+.++..++..+. .++++|+++++++++++. +++....++.++++.++...+.
T Consensus 152 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~ 213 (377)
T TIGR00890 152 LEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQLIKTNIEV------------------SVKDYTVWEMLRTPQFWVLYLS 213 (377)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHheecCchhccccCccc------------------chhhhhHHHHHcCccHHHHHHH
Confidence 334555556666666555433 344554433211111000 0011234567788887766666
Q ss_pred HHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 011424 291 YCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTS 370 (486)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (486)
.++............+.|.. +++.+..+.+.......++.+++++ ..+++.||++||+.+..+.....++...
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~l~dr~g~~~~~~~~~~~~~~~~~~ 286 (377)
T TIGR00890 214 FFLNAVSGLLLIGLYKPYGQ------SLGLSDGFLVLAVSISSIFNGGGRP-FLGALSDKIGRQKTMSIVFGISAVGMAA 286 (377)
T ss_pred HHHHhHHHHHHHHHHHHHHH------HcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 55554444334344444432 2577888889999999999999988 5566677779988887777666666555
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhc
Q 011424 371 YPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRL 450 (486)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~ 450 (486)
+...... ... .......+.+.......+....+..|.+|+++|+++.|+.+....+|..++|.+.|.+.+..
T Consensus 287 ~~~~~~~---~~~-~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~---- 358 (377)
T TIGR00890 287 MLFIPML---NDV-LFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEI---- 358 (377)
T ss_pred HHHcccc---hhH-HHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhh----
Confidence 4433211 111 11122222333334444556677889999999999999999999999999999999999887
Q ss_pred CCCCCCchhHHHHHHHHHHHHHH
Q 011424 451 DASFLPGSQMVFFVLNVVEAIGV 473 (486)
Q Consensus 451 ~~~~~~g~~~~f~~~~~~~~~~~ 473 (486)
||+..|.+.+++.+++.
T Consensus 359 ------g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 359 ------GFEYTFIVTGAFALTSL 375 (377)
T ss_pred ------chhhHHHHHHHHHHHhc
Confidence 89899988887777654
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=266.05 Aligned_cols=391 Identities=20% Similarity=0.199 Sum_probs=293.7
Q ss_pred HHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHhc---cchHHHHHHHHHH
Q 011424 68 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGL---SVNFWMAVLTRFL 144 (486)
Q Consensus 68 ~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~---a~~~~~l~~~r~l 144 (486)
.+.+|.+.++++.....+.+.+++.+|.++|++..|+++||+|||..+.++.++..++.+++.+ ++++.+++++|++
T Consensus 46 ~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i 125 (485)
T KOG0569|consen 46 IERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLI 125 (485)
T ss_pred HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4556766777777888999999999999999999999999999999999999888888877765 5799999999999
Q ss_pred HHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccCCcccccccccccCCChhhHHHHH
Q 011424 145 LGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCIS 223 (486)
Q Consensus 145 ~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~ 223 (486)
.|+..|..... ..++.|..|.+.||......+.+..+|..++..++..- .+|- ...|+..+....
T Consensus 126 ~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~---------ilGt-----~~~W~~l~~~~~ 191 (485)
T KOG0569|consen 126 VGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPS---------LLGT-----EDLWPYLLAFPL 191 (485)
T ss_pred HHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHH---------hcCC-----CcchHHHHHHHH
Confidence 99999998876 99999999999999999999999999999887665322 2222 344667777888
Q ss_pred HHHHHHHHHHHhcCCcccCCCC-CCCcccch--hhhccccc----------cchhh--hcccCCCcccccccchhhHHHH
Q 011424 224 LFAFGVTIAAFWLPETLHRHND-DDDSCDVS--YDALESAS----------AEVKE--EEGREATPKKSLLKNWPLMSSI 288 (486)
Q Consensus 224 ~~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~--~~~~~~~~----------~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 288 (486)
+++++.++...++||+|++.-. +++++++. .+...... ++.++ .++++..+.+++++|+..+.-.
T Consensus 192 i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~ 271 (485)
T KOG0569|consen 192 IPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPL 271 (485)
T ss_pred HHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHH
Confidence 8888888999999999998644 33332221 11111110 11111 1122556788999998776643
Q ss_pred HHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 011424 289 IVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLL 368 (486)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (486)
...+.....+ .+.+..+.+.+.....++.|++..++-+.....++..++.++ ++.++.||.|||++++.+..++.+..
T Consensus 272 ~i~~~v~~~q-q~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~-~~~~lid~~gRRpLll~~~~~~~~~~ 349 (485)
T KOG0569|consen 272 LIGIVVSFAQ-QFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTL-VSPFLIDRLGRRPLLLISLSLMAVAL 349 (485)
T ss_pred HHHHHHHHHH-HhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 3332222211 112222233333444455799999999999999999999998 77777777899999999988887776
Q ss_pred HHHHHHHhhhhhh-HH---HHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHH
Q 011424 369 TSYPYIAMLSGFG-LA---FLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFS 444 (486)
Q Consensus 369 ~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 444 (486)
..+.......... .| ..+.........+..+..|..+.+.+|++|++.|+.++++....+.+.+++....+..+.+
T Consensus 350 ~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~ 429 (485)
T KOG0569|consen 350 LLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQN 429 (485)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665543333222 22 2234444455567777889999999999999999999999999999999999999999998
Q ss_pred HHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhccccccCCC
Q 011424 445 WAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQRHD 486 (486)
Q Consensus 445 ~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 486 (486)
.. |. ..|+.+.+.+.+..++.++ ++||+|+
T Consensus 430 ~~----------g~-~~filF~i~~~~~~i~~~~-~lPETkg 459 (485)
T KOG0569|consen 430 VI----------GP-YVFILFVIPLAIFLIYLYR-YLPETKG 459 (485)
T ss_pred Hh----------cc-hhhHHHHHHHHHHHHHHHH-hCcccCC
Confidence 88 44 7888999999999999998 8999874
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=267.63 Aligned_cols=364 Identities=19% Similarity=0.162 Sum_probs=257.5
Q ss_pred hhHHHHHHHHHHHhhhhhhhhcccHHH-HHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHH
Q 011424 40 ITELFSIWIIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG 118 (486)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~ 118 (486)
++++..+.+..++..++..+..+.+|. +.+++|.++.+ .|++.+++.+++.+++++.|+++||+|||+++..+
T Consensus 14 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~------~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~ 87 (399)
T PRK05122 14 TLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFL------AGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFG 87 (399)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHH------HHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHH
Confidence 356778888899999999999999996 56889999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcc--------chHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhh
Q 011424 119 TASVVIFNTLFGLS--------VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPAL 189 (486)
Q Consensus 119 ~~~~~~~~~~~~~a--------~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l 189 (486)
.++.+++.+.++++ .+++.+++.|+++|++.+...+. .+++.|++|+|+|++++++.+.+..+|.++|+.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l 167 (399)
T PRK05122 88 LCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPL 167 (399)
T ss_pred HHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHH
Confidence 99888877766543 25778999999999999888876 8889999999999999999999999999999999
Q ss_pred hhhhcccCccCCcccccccccccCCChhhHHHHHHHHHHHHHHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcc
Q 011424 190 GGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEG 269 (486)
Q Consensus 190 ~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (486)
++.+.+ .+| |+..+.+..+..++..+.....|++++. +++ +
T Consensus 168 ~~~l~~-------~~g---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~------------------- 208 (399)
T PRK05122 168 GVLLYH-------WGG---------LAGLGLLIMLLALLGLLLARPRPAVPPV---KGE-R------------------- 208 (399)
T ss_pred HHHHHH-------ccc---------HHHHHHHHHHHHHHHHHHHhcCCCCCCC---Ccc-c-------------------
Confidence 999988 344 4444444444433333222222222110 000 0
Q ss_pred cCCCcccccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011424 270 REATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLER 349 (486)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (486)
.+.++.++ +.+.......+..........+.+.|..+ .++ .+.+.......++.+++++ ..+++.|
T Consensus 209 ---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~~~~~~~~~~~~-~~g~l~~ 274 (399)
T PRK05122 209 ---LPFRRVLG--RVWPYGMGLALASIGFGTIATFITLYYAA------RGW--DGAALALTLFGVAFVGARL-LFGNLIN 274 (399)
T ss_pred ---hhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------ccc--ccchHHHHHHHHHHHHHHH-HHHHHHH
Confidence 01111122 11212222222222233344455555432 233 2445666677788888877 4556666
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHH
Q 011424 350 ILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMS 429 (486)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 429 (486)
|.++++....+..+..++...+.... ..+ ...+..++.+++.....+.......+..|+++||++.|+.+....
T Consensus 275 r~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 348 (399)
T PRK05122 275 RLGGLRVAIVSLLVEILGLLLLWLAP-----SPW-MALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLD 348 (399)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHhc-----cHH-HHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 67888887777666555554443322 111 222333444445555566666667788899999999999999999
Q ss_pred HHHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhc
Q 011424 430 LFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK 478 (486)
Q Consensus 430 ~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~ 478 (486)
+|..++|.+.|.+.+.. |++..|++.+++.+++.+....
T Consensus 349 ~g~~~~~~~~g~l~~~~----------g~~~~~~~~~~~~~~~~~~~~~ 387 (399)
T PRK05122 349 LSLGITGPLAGLVASWF----------GYPSIFLAAALAALLGLALTWL 387 (399)
T ss_pred HHHHHHHHHHHHHHHHc----------CHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887 7999999988888887776655
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=276.17 Aligned_cols=418 Identities=13% Similarity=0.047 Sum_probs=270.3
Q ss_pred hhHHHHHHHHHHHhhhhhhhhcccHHHHHHHh--------cccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCC
Q 011424 40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDF--------QIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGR 111 (486)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Gr 111 (486)
.+..+...++.+..+++...+++..|.+.+++ +.++.+ .+++.+++.++..++++++|+++||+||
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~s~~~ig~~~~~~~~G~l~dr~Gr 84 (479)
T PRK10077 11 FSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSL------LGFCVASALIGCIIGGALGGYCSNRFGR 84 (479)
T ss_pred HHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhH------HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34455666788889999999999999999888 666677 9999999999999999999999999999
Q ss_pred chhhhHHHHHHHHHHHHHhcc------------chHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHH
Q 011424 112 KPVIIMGTASVVIFNTLFGLS------------VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTA 178 (486)
Q Consensus 112 r~~l~~~~~~~~~~~~~~~~a------------~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~ 178 (486)
|++++++.++++++.+.++++ ++++.++++|+++|++.|...+. .++++|++|+++|++++++.+.+
T Consensus 85 r~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~ 164 (479)
T PRK10077 85 RDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFA 164 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHH
Confidence 999999999999998887763 23677899999999999988885 99999999999999999999999
Q ss_pred hhhhHHHHhhhhhhhcccCccCCcccccccccccCCChhhHHHHHHHHHHHHHHHHhcCCcccCCCCCCCcccc--hhhh
Q 011424 179 WGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDV--SYDA 256 (486)
Q Consensus 179 ~~~g~~ig~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~--~~~~ 256 (486)
..+|.++++.+++.+...... ... ..++||.++.+.++..++..+..+++||+|++...+++.++. ..++
T Consensus 165 ~~~G~~~~~~~~~~~~~~~~~-------~~~-~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~ 236 (479)
T PRK10077 165 IIFGQLVVYFVNYFIARSGDA-------SWL-NTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRK 236 (479)
T ss_pred HHHHHHHHHHHHHHHhccCcc-------ccc-ccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHH
Confidence 999999998887766531100 000 144666666777777766666677889988653222211111 0000
Q ss_pred ccccccchh------hhcccCCCcccccccchhhHHHHHHHHHHHhhhh----hhhHHHHHhhcCccccCccccccchhH
Q 011424 257 LESASAEVK------EEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDM----AYSEIFSLWANSPKKLGGLNYSTQMVG 326 (486)
Q Consensus 257 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~~~~~~~ 326 (486)
.....+..+ +..+++....+..+.-. ................ ....+.|.+. ++.|++.....
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~------~~~g~~~~~~~ 309 (479)
T PRK10077 237 IMGNTLATQALQEIKHSLDHGRKTGGKLLMFG-VGVIVIGVMLSVFQQFVGINVVLYYAPEIF------KTLGASTDIAL 309 (479)
T ss_pred HcCChhHHHHHHHHHHHHHHhhhhhhhhcchh-HHHHHHHHHHHHHHHHhChhHHHHHHHHHH------HHcCCCCchHH
Confidence 000000000 00000000001111100 0011111111111100 1111222222 22577777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhh
Q 011424 327 EVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFI 406 (486)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (486)
+.....++..+++.+ ..+++.||++||+.+..+..+..++...+...........+ ......+....+.....+..+.
T Consensus 310 ~~~~~~~~~~~i~~~-~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 387 (479)
T PRK10077 310 LQTIIVGVINLTFTV-LAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIV-ALLSMLFYVAAFAMSWGPVCWV 387 (479)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHH-HHHHHHHHHHHHhccccchhHH
Confidence 777777888888887 66667777899999888888777776665443221111111 1111112222222233467788
Q ss_pred hhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhccccccCC
Q 011424 407 LQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQRH 485 (486)
Q Consensus 407 ~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 485 (486)
+++|.+|++.|+++.|+.+...++++++++.+.+.+.+.....+ ..++...|++.+++++++.++.+. ..||+|
T Consensus 388 ~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~ 461 (479)
T PRK10077 388 LLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVA----HFHNGFSYWIYGCMGVLAALFMWK-FVPETK 461 (479)
T ss_pred HhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhh----hccCccHHHHHHHHHHHHHHHHHh-ccccCC
Confidence 99999999999999999999999999999888776552100000 015677888888877777777665 466655
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=272.99 Aligned_cols=395 Identities=12% Similarity=0.039 Sum_probs=260.6
Q ss_pred HHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHH
Q 011424 46 IWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF 125 (486)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~ 125 (486)
..+......+.........|.+.++ |.+..+ .+++.+.+.+++.+++++.|+++||+|||++++++.++.+++
T Consensus 34 ~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~------~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~ 106 (452)
T PRK11273 34 IFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGD------LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAV 106 (452)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHH------HHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHH
Confidence 3344444455555567778888888 999998 999999999999999999999999999999999999999999
Q ss_pred HHHHhcc----chHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHH-HHhhhhhhhcccCcc
Q 011424 126 NTLFGLS----VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLI-IGPALGGFLAQPAEK 199 (486)
Q Consensus 126 ~~~~~~a----~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-ig~~l~~~l~~~~~~ 199 (486)
.++++++ .+++.+++.|++.|++.|...+. ...+.|++|+++|++++++++.+.++|.. .+|+++..+..
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~---- 182 (452)
T PRK11273 107 MLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAW---- 182 (452)
T ss_pred HHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH----
Confidence 9888875 37889999999999998887774 77889999999999999999999999874 45554433333
Q ss_pred CCcccccccccccCCChhhHHHHHHHHHH-HHHHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCCCc-ccc
Q 011424 200 YPNLFSSESLFGKFPYFLPCLCISLFAFG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATP-KKS 277 (486)
Q Consensus 200 ~~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 277 (486)
..| ||..+++.+++.++ .++..+++||+++....+++++.. ++..+..+++++++.+.... .+.
T Consensus 183 ---~~g---------w~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 248 (452)
T PRK11273 183 ---FND---------WHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYK--NDYPDDYNEKHEQELTAKQIFMQY 248 (452)
T ss_pred ---hcc---------HHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhhh--hccccccccccCCCccHHHHHHHH
Confidence 223 44444565554444 345566778876542211111000 00000000000000000011 123
Q ss_pred cccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhh--hhHH
Q 011424 278 LLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL--GPIM 355 (486)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 355 (486)
+++++.+|...+..++..........++|.|+.+. .|++..+++.......++.+++.+ ..+++.||. +|++
T Consensus 249 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~-----~g~s~~~~~~~~~~~~~~~~~g~~-~~G~l~dr~~~~r~~ 322 (452)
T PRK11273 249 VLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEV-----KHFALDKSSWAYFLYEYAGIPGTL-LCGWMSDKVFRGNRG 322 (452)
T ss_pred HHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHccCCcc
Confidence 67888888887777777666667777888887654 578888888888888888888888 566666665 3443
Q ss_pred HHHH-HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHH
Q 011424 356 VARI-AGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAA 434 (486)
Q Consensus 356 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~ 434 (486)
.... ...+..+....+.. .. ....+.. .+.....+...............|.+|++.||+++|+.+...++|+.+
T Consensus 323 ~~~~~~~~l~~~~~~~~~~-~~--~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~ 398 (452)
T PRK11273 323 ATGVFFMTLVTIATIVYWL-NP--AGNPTVD-MACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSV 398 (452)
T ss_pred hHHHHHHHHHHHHHHHHHH-hc--ccChHHH-HHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHH
Confidence 3222 11222222222211 11 1111111 111222222222222233445678899999999999999999998765
Q ss_pred -HhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhccccccCC
Q 011424 435 -GPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQRH 485 (486)
Q Consensus 435 -~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 485 (486)
+|.+.|.+.|.. |++..|.+++++++++++.......+|+|
T Consensus 399 ~g~~v~g~l~~~~----------g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 440 (452)
T PRK11273 399 AASAIVGYTVDFF----------GWDGGFMVMIGGSILAVILLIVVMIGEKR 440 (452)
T ss_pred hhhhhHHHHHHHh----------cchHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 799999999988 79999988888888876666542445544
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-34 Score=270.04 Aligned_cols=354 Identities=16% Similarity=0.082 Sum_probs=268.3
Q ss_pred HHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHH
Q 011424 46 IWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF 125 (486)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~ 125 (486)
+..+.++..++.....+.+|.+.++++.++.+ .+++.+++.++..+++++.|+++||+|||++++.+.++..++
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~ 77 (365)
T TIGR00900 4 LFAAQLISLIGTAITQVALPLYVLAGTGSASV------LSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVL 77 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH------HHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHH
Confidence 45677788888888999999999999999988 999999999999999999999999999999999999999999
Q ss_pred HHHHhccc-----hHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCcc
Q 011424 126 NTLFGLSV-----NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK 199 (486)
Q Consensus 126 ~~~~~~a~-----~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~ 199 (486)
.++..+++ |++.+++.|+++|++.+...+. .+++.|++|+++|++++++.+.+..+|.+++|.+++.+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~---- 153 (365)
T TIGR00900 78 VAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYA---- 153 (365)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----
Confidence 88888877 9999999999999999988886 9999999999999999999999999999999999999988
Q ss_pred CCcccccccccccCCChhhHHHHHHHHHHHHHHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCCCcccccc
Q 011424 200 YPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLL 279 (486)
Q Consensus 200 ~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (486)
..| |+..+...++..++..+....++++++.++++++.++.. .++.....+.++
T Consensus 154 ---~~g---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~ 207 (365)
T TIGR00900 154 ---TLG---------IKWAIWVDAVGFAISALLIVSVRIPELAASEIQALSNAV--------------LRDTREGIKFVL 207 (365)
T ss_pred ---Hhh---------HHHHHHHHHHHHHHHHHHHHhcccccCCCccccccchhH--------------HHHHHhHHHHHH
Confidence 344 444445555554444433333322211111111000000 000112345677
Q ss_pred cchhhHHHHHHHHHHHhhhhhhh-HHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 011424 280 KNWPLMSSIIVYCVFSLHDMAYS-EIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVAR 358 (486)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (486)
++|.++...+..++......... .+.|.+..+. +|.+..+.+.......++.+++.+ ..++++||.++++...
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~ 281 (365)
T TIGR00900 208 KNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKY-----LGRGSTHYGWVLAAFGLGALLGAL-LLGLLGRYFKRMALMT 281 (365)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----hCCchHHHHHHHHHHHHHHHHHHH-HHHHHHHHhchhHHHH
Confidence 88888877776666655544444 5566665433 588899999999999999999988 5567788888888877
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhh
Q 011424 359 IAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAG 438 (486)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~ 438 (486)
.+..+..+....+.+... ......+..++.+++.....+....+..|.+|+++|+++.|+.+...+++..++|.+
T Consensus 282 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~ 356 (365)
T TIGR00900 282 GAIFVIGLAILVVGLTPP-----NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLIL 356 (365)
T ss_pred HHHHHHHHHHHHHHhhch-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 765555555444443321 122333444555556666777888889999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 011424 439 GGALFSWA 446 (486)
Q Consensus 439 ~g~l~~~~ 446 (486)
.|.+.|..
T Consensus 357 ~g~l~~~~ 364 (365)
T TIGR00900 357 AGPLADHL 364 (365)
T ss_pred HHHHHHHc
Confidence 99998864
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-33 Score=261.27 Aligned_cols=394 Identities=12% Similarity=0.052 Sum_probs=278.1
Q ss_pred ccCCCChhHHHHHHHHHHHhhhhhhhhcccHHHHHH-HhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCc
Q 011424 34 TKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIK-DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRK 112 (486)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr 112 (486)
..++..++.+...+++.++......+.+++.+.+.+ |+|+|.+| .+++.+++.+++.++.++.|++.||+|.|
T Consensus 27 ~~~~~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q------~g~l~ai~~l~~al~rip~G~l~Dr~G~R 100 (462)
T PRK15034 27 KGKHIARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQ------LFLLTALPSVSGALLRVPYSFMVPIFGGR 100 (462)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCCh
Confidence 334445677888888888899999999999998876 89999999 99999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHhcc-----chHHHHHHHHHHHHhhccchhhHHHHHhhhccchhhhhHhhHHHHHhhhhHHHHh
Q 011424 113 PVIIMGTASVVIFNTLFGLS-----VNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGP 187 (486)
Q Consensus 113 ~~l~~~~~~~~~~~~~~~~a-----~~~~~l~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~ 187 (486)
+++.++.+++++.+++.+++ +|++.+++.|++.|++.+...+....+++++|+++||+++|+.....++|..+++
T Consensus 101 ~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gigg~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~ 180 (462)
T PRK15034 101 RWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFAGANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQ 180 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHH
Confidence 99999999999999999987 8999999999999998444444599999999999999999999777777777666
Q ss_pred hhhhhhc-----ccCccCCcccccccccc----cCCChhhHHHHHHHHHHHHHHHH-hcCCcccCCCCCCCcccchhhhc
Q 011424 188 ALGGFLA-----QPAEKYPNLFSSESLFG----KFPYFLPCLCISLFAFGVTIAAF-WLPETLHRHNDDDDSCDVSYDAL 257 (486)
Q Consensus 188 ~l~~~l~-----~~~~~~~~~~gw~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~ 257 (486)
++...+. + .+||+.... ..+|+....+..+..++..+..+ ..++.++ . +.
T Consensus 181 ~l~p~~i~~~l~~-------~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~-~--~~---------- 240 (462)
T PRK15034 181 LVAPLVIFVPVFA-------FLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS-S--RA---------- 240 (462)
T ss_pred HHHHHHHHHHHHH-------HhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-c--cc----------
Confidence 6554433 3 455544331 22355555555555554443333 3333221 1 00
Q ss_pred cccccchhhhcccCCCcccccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHH
Q 011424 258 ESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLL 337 (486)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 337 (486)
..++.++.+|+|..|...+.+++.+....++..++|.|..+. ++............+...
T Consensus 241 -------------~~~~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~-------~~~~~~l~~~~l~~l~~~ 300 (462)
T PRK15034 241 -------------SIADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQ-------FPDVNILRLAFFGPFIGA 300 (462)
T ss_pred -------------CHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------cChHHHHHHHHHHHHHHH
Confidence 012345688999999999999998888888888888886543 222222222333456667
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccc---
Q 011424 338 VFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQ--- 414 (486)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 414 (486)
+.++ +++++.||+|++++..++.....++.......................+......+......+-++.+.+|+
T Consensus 301 l~rp-lgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~ 379 (462)
T PRK15034 301 IARS-VGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITI 379 (462)
T ss_pred HHHH-hhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhh
Confidence 7777 778888899999998888776665543322222111101111222222222222222233344444444553
Q ss_pred ------------------CchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHh
Q 011424 415 ------------------DQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMT 476 (486)
Q Consensus 415 ------------------~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~ 476 (486)
++.|.+.|+....+.+|+++-|.+.|...+.. +++...|+.+.+..+++.++.
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~---------g~~~~~~~~~~~~~~~~~~~~ 450 (462)
T PRK15034 380 YRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMT---------GSPVGAMKVFLIFYIVCVLLT 450 (462)
T ss_pred hcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHc---------CCcHHHHHHHHHHHHHHHHHH
Confidence 26789999999999999999999999998887 368888999999999998888
Q ss_pred hcccccc
Q 011424 477 FKPFLAQ 483 (486)
Q Consensus 477 ~~~~~~~ 483 (486)
+..+.|+
T Consensus 451 w~~y~r~ 457 (462)
T PRK15034 451 WLVYGRR 457 (462)
T ss_pred HHHhccC
Confidence 7744443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=262.14 Aligned_cols=364 Identities=15% Similarity=0.152 Sum_probs=268.2
Q ss_pred hHHHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHH
Q 011424 41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA 120 (486)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~ 120 (486)
+.++.+..+.++..++.....+.+|.+.+++|.|+.+ .|++.+.+.++..+++++.|+++||+|||+++..+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~------~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~ 79 (381)
T PRK03633 6 RPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQ------VGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASL 79 (381)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4467778888889999999999999999999999998 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCcc
Q 011424 121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK 199 (486)
Q Consensus 121 ~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~ 199 (486)
+.+++.+++++++|++.++++|+++|++.+...+. .+.+.|..++++|+++++.+..+.++|..+||.+++.+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~---- 155 (381)
T PRK03633 80 IFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVST---- 155 (381)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----
Confidence 99999999999999999999999999998887775 7778888999999999999999999999999999999876
Q ss_pred CCcccccccccccCCChhhHHHHHHHHHHHHHHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCCCcccccc
Q 011424 200 YPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLL 279 (486)
Q Consensus 200 ~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (486)
...| ...|+. .......+. ..+.+.+++..+ ++ +..+.++.+
T Consensus 156 ---~~~~-----~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~-~~-----------------------~~~~~~~~~ 197 (381)
T PRK03633 156 ---ELMS-----VLPWVT-----GLVLAAILP-LLFTRILNQQAE-NH-----------------------DSTSIWPML 197 (381)
T ss_pred ---cccc-----hHHHHH-----HHHHHHHHH-HHHhcccCCCCC-CC-----------------------CCCCHHHHH
Confidence 2111 111221 111111111 112121111100 00 011234566
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 011424 280 KNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARI 359 (486)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (486)
++|.++......+...........+.|.|..+ .|.++.+.+.......++.++++. ..+++.||.++|+.+..
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~------~g~s~~~~g~~~~~~~~~~~~~~~-~~g~l~dr~~~~~~l~~ 270 (381)
T PRK03633 198 KLRQARLGVNGCIISGIVLGSLYGLMPLYLNH------QGMSDASIGFWMALLVSAGILGQW-PIGRLADRFGRLLVLRV 270 (381)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHHHHh-hhHHHHHHcCcHHHHHH
Confidence 77776654433333333334444566666543 478888899998888899999988 45666777788888777
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhH
Q 011424 360 AGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGG 439 (486)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~ 439 (486)
+..+..++...+. . .... .....+.+.......|.......|..|+++++.+.+..+...++|..++|.+.
T Consensus 271 ~~~~~~~~~~~~~--~---~~~~----~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~ 341 (381)
T PRK03633 271 QVFVVILGSIAML--S---QAAM----APALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFT 341 (381)
T ss_pred HHHHHHHHHHHHh--h---hHHH----HHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666555443332 1 1111 11122223334456777888888888888888888888888999999999999
Q ss_pred HHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhc
Q 011424 440 GALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK 478 (486)
Q Consensus 440 g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~ 478 (486)
|++.|.. |+...|.+.+.+.++..+..++
T Consensus 342 G~l~~~~----------g~~~~f~~~~~~~l~~~~~~~~ 370 (381)
T PRK03633 342 AMLMQNY----------SDNLLFIMIASVSFIYLLMLLR 370 (381)
T ss_pred HHHHHHh----------CccHHHHHHHHHHHHHHHHHHh
Confidence 9999987 7888999988888877766666
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-33 Score=263.61 Aligned_cols=368 Identities=16% Similarity=0.203 Sum_probs=260.4
Q ss_pred HHHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHH
Q 011424 42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS 121 (486)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~ 121 (486)
.++.+....+..........+.+|.+.+|+|.+..+ .|++.+.+.+++.++++++|+++||+|||+++.++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~------~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 77 (382)
T PRK10091 4 VILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPA------AGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVAL 77 (382)
T ss_pred hHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHH------HhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHH
Confidence 456677788888888899999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccC
Q 011424 122 VVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY 200 (486)
Q Consensus 122 ~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~ 200 (486)
.+++.+++++++|++.+++.|+++|++.+...+. ..++.|++|+++|+++++....+..+|..++|++++++.+
T Consensus 78 ~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~----- 152 (382)
T PRK10091 78 CVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQ----- 152 (382)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhh-----
Confidence 9999999999999999999999999998887776 8889999999999999999999999999999999999987
Q ss_pred CcccccccccccCCChhhHHHHHHHHHHHH-HHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCCCcccccc
Q 011424 201 PNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLL 279 (486)
Q Consensus 201 ~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (486)
.+||| ..+.+.++..++.. .....+||.+++.+. + . ....+.+
T Consensus 153 --~~gwr---------~~f~~~~~~~~~~~~~~~~~lp~~~~~~~~-----~-~-------------------~~~~~~~ 196 (382)
T PRK10091 153 --EFSWR---------YTFLLIAVFNIAVLASIYFWVPDIRDEAKG-----G-L-------------------REQFHFL 196 (382)
T ss_pred --hccHH---------HHHHHHHHHHHHHHHHHHHhCCCCCccccc-----C-H-------------------HHHHHHh
Confidence 44544 44456555544443 334557775321100 0 0 0011245
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 011424 280 KNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARI 359 (486)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (486)
+++..+...+...+..........+.+.++.+. +|+++.+.++.....+++.+++++ ..+++.||.++++....
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~~~~~~~~~~~~~ig~~-~~g~l~~r~~~~~~~~~ 270 (382)
T PRK10091 197 RSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFI-----SGFSETSMTFIMMLVGLGMVLGNL-LSGRLSGRYSPLRIAAV 270 (382)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHhH-HHheeccccCchhHHHH
Confidence 666666554444433322223333334343322 688999999999999999999998 56666777788888777
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhh-hhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhh
Q 011424 360 AGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITG-LFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAG 438 (486)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~ 438 (486)
+..+..+..+.+...... .+... +..+..+....+..+. ......+..+++.++.+ ..+....+|.++||.+
T Consensus 271 ~~~~~~i~~~~~~~~~~~----~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~ 343 (382)
T PRK10091 271 TDFIIVLALLMLFFFGGM----KTASL-IFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYC 343 (382)
T ss_pred HHHHHHHHHHHHHHHHhh----HHHHH-HHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHH
Confidence 766655554443322211 11111 1111122222222222 22334444455555554 3467789999999999
Q ss_pred HHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhc
Q 011424 439 GGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK 478 (486)
Q Consensus 439 ~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~ 478 (486)
.|.+.|.. .+|+..+.+.+++.++.......
T Consensus 344 ~G~l~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 374 (382)
T PRK10091 344 GGMMLTLG---------LAYNYVALPAALLSFAAMSSLLL 374 (382)
T ss_pred hHHHHHcc---------cCcchHHHHHHHHHHHHHHHHHH
Confidence 99999864 26888888877666665544433
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-33 Score=270.18 Aligned_cols=377 Identities=15% Similarity=0.138 Sum_probs=274.4
Q ss_pred hhHHHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHH
Q 011424 40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT 119 (486)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~ 119 (486)
.+.++.++++.++..++.....+.+|.+.+|+|.+..+ .+++.+.+.++..++.+++|+++||+|||++++.+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~------~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~ 82 (471)
T PRK10504 9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLH------MHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAI 82 (471)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 34567778888889999999999999999999999998 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCc
Q 011424 120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE 198 (486)
Q Consensus 120 ~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~ 198 (486)
++.+++.++++++++++.+++.|+++|++.+...+. .+++.|++|+++|+++.++.....++|..++|.+++.+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~--- 159 (471)
T PRK10504 83 VLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVE--- 159 (471)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh---
Confidence 999999999999999999999999999999888876 8899999999999999999999999999999999999998
Q ss_pred cCCcccccccccccCCChhhHHHHHHHHHHHHH-HHHhcCCcccCCCCCCCcccchhh---------hcccccc---c--
Q 011424 199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYD---------ALESASA---E-- 263 (486)
Q Consensus 199 ~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~---------~~~~~~~---~-- 263 (486)
..|||+.| .+......+..+ .....|+.+.... +.+....... ..++... .
T Consensus 160 ----~~gw~~~f---------~~~~~~~~l~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (471)
T PRK10504 160 ----YASWHWIF---------LINIPVGIIGAIATLMLMPNYTMQTR-RFDLSGFLLLAVGMATLTLALDGSKGLGLSPL 225 (471)
T ss_pred ----hccHHHHH---------HHHHHHHHHHHHHHHHhCCCccccCC-CCChHHHHHHHHHHHHHHHHHhcCCcCCcchH
Confidence 44554443 554444443333 3334454332211 1111100000 0000000 0
Q ss_pred -----------------hhhhcccCCCcccccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhH
Q 011424 264 -----------------VKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVG 326 (486)
Q Consensus 264 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 326 (486)
.++++.+++....++++||+++...+..++..........+.|+|.... .|.++.+.+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~g 300 (471)
T PRK10504 226 AIAGLVAVGVVALLLYLLHARNNNRALFSLKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIG-----LGFSPFHAG 300 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCHHHHH
Confidence 0011111222233578999988877777776666555556667666543 688899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhh
Q 011424 327 EVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFI 406 (486)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (486)
+...+..++.+++.. ..+.+.||+++|+.+..+..+..+...++.+..... ..+ ...+..++.+.+.....+....
T Consensus 301 ~~~~~~~~~~~~~~~-~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~g~~~~~~~~~~~~ 376 (471)
T PRK10504 301 LMMIPMVLGSMGMKR-IVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLG--WYY-LLPFVLFLQGMVNSTRFSSMNT 376 (471)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccc--cHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 999888888887777 455666777999888877776666555544432111 111 1122223333444455666777
Q ss_pred hhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhh
Q 011424 407 LQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQK 448 (486)
Q Consensus 407 ~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~ 448 (486)
...+.+|++.+++++|+.++...+|..+|+.+.|.+.+..+.
T Consensus 377 ~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 377 LTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 777889999999999999999999999999999999988754
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-33 Score=263.31 Aligned_cols=369 Identities=12% Similarity=0.129 Sum_probs=268.9
Q ss_pred hHHHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHH
Q 011424 41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA 120 (486)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~ 120 (486)
+..+...+..++.........+.+|.+.+++|.++++ .+++.+.+.+++.+++++.|++.||+|||+++..+.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~------~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~ 80 (394)
T PRK03699 7 KLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSS------MSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFA 80 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4455666778888888889999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCcc
Q 011424 121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK 199 (486)
Q Consensus 121 ~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~ 199 (486)
+.+++.+++++++|++.+++.|+++|++.|...+. .+++.|++|+++|+++++..+....+|..++|.+.+.+.+.
T Consensus 81 ~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~--- 157 (394)
T PRK03699 81 LMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLAR--- 157 (394)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 99999999999999999999999999998877765 88999999999999999999999999999999998887641
Q ss_pred CCcccccccccccCCChhhHHHHHHHHHHHHHHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCCCcccccc
Q 011424 200 YPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLL 279 (486)
Q Consensus 200 ~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (486)
..| ||.++...++..++..+..++ .+.|+.++++++ + . ++ ..++ .
T Consensus 158 ---~~g---------w~~~f~~~~~~~~~~~~~~~~-~~~p~~~~~~~~--~-~--------------~~----~~~~-~ 202 (394)
T PRK03699 158 ---SIE---------WYWVYACIGLVYVAIFILTLF-SEFPALGKHAPK--A-D--------------KP----VAKE-K 202 (394)
T ss_pred ---ccc---------HHHHHHHHHHHHHHHHHHHHh-cCCccccccCcc--c-c--------------Cc----cccc-c
Confidence 234 444445555555444333332 222211111000 0 0 00 0011 1
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 011424 280 KNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARI 359 (486)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (486)
.++.++...+..++.......+..+.|.|+.+. +|+++.+.+...+...++..++++ ..+++.||+++|+....
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~g~s~~~~~~~~~~~~~~~~ig~~-~~g~l~dr~~~~~~l~~ 276 (394)
T PRK03699 203 WGIGVLFLAIAALLYILAQLTFISWVPEYAQKK-----FGMSLEDAGNLVSNFWMAYMVGMW-IFSFIVRFFDLQRILTV 276 (394)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCChHHhhHHHHHHHHHHHHHHH-HHHHHHHHhchhhHHHH
Confidence 235555555566665555666777888887554 689999999999999999999988 66677788888888776
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhH
Q 011424 360 AGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGG 439 (486)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~ 439 (486)
...+..+....+.... + .+ ...+..+..+++.....+...+...+..| +.+++..+......++|..++|.+.
T Consensus 277 ~~~~~~~~~~~~~~~~---~--~~-~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~ 349 (394)
T PRK03699 277 LAGLALVLMYLFVNTD---D--PS-HLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVT 349 (394)
T ss_pred HHHHHHHHHHHHHHcC---C--ch-HHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHH
Confidence 6655544433332221 1 11 12223334444455556666666666555 5567888999999999999999999
Q ss_pred HHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHh
Q 011424 440 GALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMT 476 (486)
Q Consensus 440 g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~ 476 (486)
|++.+.. |++..++..+++.+++.+..
T Consensus 350 G~l~~~~----------g~~~~~~~~~~~~~~~~~~~ 376 (394)
T PRK03699 350 SPIVAHF----------GLQAALLTANGLYAVVFVMC 376 (394)
T ss_pred HHHHHHh----------CchhhhhhhHHHHHHHHHHH
Confidence 9999987 77778877777666664433
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-35 Score=254.80 Aligned_cols=372 Identities=38% Similarity=0.593 Sum_probs=272.1
Q ss_pred hhhcccHHHHHHHhcccccchh--hhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHhccchH
Q 011424 58 SSLFPFLYFMIKDFQIAKREED--IGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF 135 (486)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~ 135 (486)
....+......++|+.-..+.+ ...+.|.+.+.+.+.+.+.++.+|.++||+|||+++.+|++..++...+.++++||
T Consensus 42 ~~L~~~~~~~V~~F~~a~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F 121 (451)
T KOG2615|consen 42 SSLYPFVVFMVRDFNIAIGEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNF 121 (451)
T ss_pred cchhHHHHHhhHHHHHhhCCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556667778876554444 67789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccchhhHHHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccCCcccccccccccCCC
Q 011424 136 WMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPY 215 (486)
Q Consensus 136 ~~l~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~~~~gw~~~~~~~~~ 215 (486)
..++++|++.|+..|-..++.++++|.+++|+|+++++.++..+++|.++||.+|+++.+. . ..++.+.+
T Consensus 122 ~afv~aR~l~Gi~kgnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f--------~--~~~g~~p~ 191 (451)
T KOG2615|consen 122 AAFVLARFLGGIFKGNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQF--------S--SISGSYPF 191 (451)
T ss_pred HHHHHHHHhhhhccCchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhh--------H--hhhccCch
Confidence 7788889999999999999999999999999999999999999999999999999999871 1 12225556
Q ss_pred hhhHHHHHHHHHH-HHHHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCCCcccccccchhhHHHHHHHHHH
Q 011424 216 FLPCLCISLFAFG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVF 294 (486)
Q Consensus 216 ~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (486)
..|.++..+.+.. .....+++||+-+.++++ ++.... .+..++.++..+.........+||++.......+...
T Consensus 192 alP~~~v~i~a~~~v~~~~~~lpETL~~rk~~-~~~~~~----~~~~~~~~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~ 266 (451)
T KOG2615|consen 192 ALPCLLVFILAAGDVTFFPWFLPETLPLRKRN-DEHSTL----QEAADDRLALLKFARIFKVAALRNPPLLDFISVLRIF 266 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCccccchhhc-ccccch----hhhhhhhhhhcchhhhhhhhhhcCccccchHHHHHHH
Confidence 6666666666655 456678899997665554 111111 1111111111111111223456777666555566666
Q ss_pred HhhhhhhhHHHHHhhcCcccc--CccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHH
Q 011424 295 SLHDMAYSEIFSLWANSPKKL--GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMV-ARIAGVLTIPLLTSY 371 (486)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 371 (486)
....+.+...++.|..+.... +++|+++.+.|.+++..++.+.+.+....+.+.+..+..+. +.....++...++.+
T Consensus 267 ~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~lll 346 (451)
T KOG2615|consen 267 GLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLL 346 (451)
T ss_pred HHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHH
Confidence 666666666666666655444 67999999999999999999999888777777665443222 222222222222222
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhc
Q 011424 372 PYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRL 450 (486)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~ 450 (486)
.... ....+.....+..+......+....++....|+++||+++|+..+.+.++.++||.+.|.+..+....+
T Consensus 347 s~~~------~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~~~ 419 (451)
T KOG2615|consen 347 SLAR------TPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQGAQ 419 (451)
T ss_pred hccc------cchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEecCCC
Confidence 2211 123455556666667777888889999999999999999999999999999999999999988875443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=272.03 Aligned_cols=368 Identities=14% Similarity=0.092 Sum_probs=257.9
Q ss_pred HHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHH
Q 011424 49 IVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTL 128 (486)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~ 128 (486)
..+...++.....+..|.+.+++|.+..+ .+++.+++.++..+++++.|+++||+|||+++.++.++.+++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 76 (379)
T TIGR00881 3 GYAAYYLVRKNFALAMPYLVEEIGLSKTD------LGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLF 76 (379)
T ss_pred hhhHHHHhHHhhhhhhHHHHHHhCCCHhH------HHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHH
Confidence 45567778888899999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHh-hhhhhhcccCccCCccccc
Q 011424 129 FGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGP-ALGGFLAQPAEKYPNLFSS 206 (486)
Q Consensus 129 ~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~-~l~~~l~~~~~~~~~~~gw 206 (486)
++++++++.+++.|++.|++.+...+. .+++.|++|+++|++++++.+.+..+|..++| .+++.+.+ ..+|
T Consensus 77 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------~~~~ 149 (379)
T TIGR00881 77 FGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAE-------LYSW 149 (379)
T ss_pred HHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHh-------cCCc
Confidence 999999999999999999998888775 89999999999999999999999999999999 46666665 3444
Q ss_pred ccccccCCChhhHHHHHHHHHHH-HHHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCCCcccccccchhhH
Q 011424 207 ESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLM 285 (486)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (486)
| ..+.+.++..++. ++..++.||+++..+.++++++.. ++.++..++++++.++.....++++++|.++
T Consensus 150 ~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (379)
T TIGR00881 150 H---------WVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPN-EEPDGDAEKKEEELTKKQIFLQYVLLNKVLW 219 (379)
T ss_pred h---------hHHHHHHHHHHHHHHHHheeeCCCccccccCccccCcc-cccccccccccccccchHHHHHHHHhcchHH
Confidence 4 4445555544443 444556676654332211111110 0000000001111111122345677888888
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 011424 286 SSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTI 365 (486)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (486)
...+..++..........+.+.|..+. +|+++.+.+.......++.+++.++.+...+|+.++++..........
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~ 294 (379)
T TIGR00881 220 YISLGYVFVYVVRTGILDWSPLYLTQE-----KGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMAL 294 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 877777777766667777777776544 688999999999999999999988554444433333332222111111
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHH
Q 011424 366 PLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSW 445 (486)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 445 (486)
............ . .......+..+..+.+..+..+....+..|.+|++.|+++.|+.+....+|+.++|.+.|.+.|.
T Consensus 295 ~~~~~~~~~~~~-~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 372 (379)
T TIGR00881 295 IIVSLLVYWLNP-A-ANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADG 372 (379)
T ss_pred HHHHHHHHhcCc-c-hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHh
Confidence 111111111100 1 11112222223333333444455567788999999999999999999999999999999999998
Q ss_pred H
Q 011424 446 A 446 (486)
Q Consensus 446 ~ 446 (486)
.
T Consensus 373 ~ 373 (379)
T TIGR00881 373 F 373 (379)
T ss_pred h
Confidence 7
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=262.55 Aligned_cols=363 Identities=17% Similarity=0.165 Sum_probs=252.3
Q ss_pred hHHHHHHHHHHHhhhhhhhhcccHHH-HHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHH
Q 011424 41 TELFSIWIIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT 119 (486)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~ 119 (486)
+.++.+..+.++..+..++..|.+|. +.+|+|.|..+ .|++.+++.+++.++++++|+++||+||||+++.+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~------~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~ 88 (392)
T PRK12382 15 FSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTM------VGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGM 88 (392)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHH------HHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHH
Confidence 44666777788888888999999996 56899999999 999999999999999999999999999999999998
Q ss_pred HHHHHHHHHH---hc-----cchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhh
Q 011424 120 ASVVIFNTLF---GL-----SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG 190 (486)
Q Consensus 120 ~~~~~~~~~~---~~-----a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~ 190 (486)
+...++.+.+ +. .+|++.+++.|+++|++.+...+. .+++.|++|+|+|++++++.+.+...|..++|+++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~ 168 (392)
T PRK12382 89 LACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLG 168 (392)
T ss_pred HHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHH
Confidence 8777665432 22 358899999999999998887776 88999999999999999999999999999999999
Q ss_pred hhhcccCccCCcccccccccccCCChhhHHHHHHHHHHHHHHHHhcCCcccCCCCCCCcccchhhhccccccchhhhccc
Q 011424 191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGR 270 (486)
Q Consensus 191 ~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (486)
+.+.+ .++|+..+.+..+..++........||.+++ +++ +
T Consensus 169 ~~l~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~-------------------- 208 (392)
T PRK12382 169 LLLHS----------------HFGFAALALTTMVLPLLAWAFNGTVRKVPAH---AGE-R-------------------- 208 (392)
T ss_pred HHHHh----------------ccChHHHHHHHHHHHHHHHHHHHhccCCCCC---ccc-C--------------------
Confidence 99987 3344443343333322222222222332111 000 0
Q ss_pred CCCcccccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011424 271 EATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI 350 (486)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (486)
.+.++.++ .++...+..++..........+.+.|+.+ .+++ +.+.......++.+++++ ..+++.||
T Consensus 209 --~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~------~~~~--~~~~~~~~~~~~~~~~~~-~~g~l~~r 275 (392)
T PRK12382 209 --PSLWSVVG--LIWKPGLGLALQGVGFAVIGTFVSLYFAS------KGWA--MAGFTLTAFGGAFVLMRV-LFGWMPDR 275 (392)
T ss_pred --chHHHHHH--HHHHhHHHHHHHHHHHhHHHHHHHHHHHh------cCCc--hhHHHHHHHHHHHHHHHH-HHHHHHHh
Confidence 00111111 11111111122222222333445555432 2433 345566666777778877 45556667
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHH
Q 011424 351 LGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSL 430 (486)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 430 (486)
.++++.+..+..+..+....+.... ..+ ...+...+.+.+.....+.......+..|+++||++.|+.++...+
T Consensus 276 ~g~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 349 (392)
T PRK12382 276 FGGVKVAIVSLLVETVGLLLLWLAP-----TAW-VALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDI 349 (392)
T ss_pred cCCCeehHHHHHHHHHHHHHHHHcc-----cHH-HHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 7888887777766666555443321 111 2222333344444455666677777889999999999999999999
Q ss_pred HHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhc
Q 011424 431 FKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK 478 (486)
Q Consensus 431 g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~ 478 (486)
|..++|.+.|.+.|.. ||+..|.+.+++.+++.+..++
T Consensus 350 g~~ig~~~~g~l~~~~----------g~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 350 AYGVSGPLAGMLATSF----------GYPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred HHHHHHHHHHHHHHHh----------CchHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999987 8999999999888888777665
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=274.14 Aligned_cols=374 Identities=14% Similarity=0.155 Sum_probs=277.7
Q ss_pred HHHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHH
Q 011424 42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS 121 (486)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~ 121 (486)
.+..+.++.++..++.....+.+|.+.+++|.+.++ .+++.+.+.++..++.++.|+++||+|||++++++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 76 (485)
T TIGR00711 3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQ------VQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFA 76 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhh------hhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHH
Confidence 345677788889999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccC
Q 011424 122 VVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY 200 (486)
Q Consensus 122 ~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~ 200 (486)
..++.+++++++|++.+++.|+++|++.+...+. .+++.|++|+++|+++++++.....+|..++|.+++++.+
T Consensus 77 ~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~----- 151 (485)
T TIGR00711 77 FTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIE----- 151 (485)
T ss_pred HHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhcc-----
Confidence 9999999999999999999999999998888776 9999999999999999999999999999999999999988
Q ss_pred CcccccccccccCCChhhHHHHHHHHHHHH-HHHHhcCCcccCCCCCCCcccch-------------hhhccccccch--
Q 011424 201 PNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVS-------------YDALESASAEV-- 264 (486)
Q Consensus 201 ~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~-------------~~~~~~~~~~~-- 264 (486)
.+|||+.| .+.....++.. +..+.+||+++..+++.+..... .+..++.+.+.
T Consensus 152 --~~~w~~~f---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (485)
T TIGR00711 152 --NYHWRWIF---------LINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNE 220 (485)
T ss_pred --CcCceehh---------hhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchH
Confidence 56666555 44444444333 34455666543322211110000 00000000000
Q ss_pred -----------------hhhcccCCCcccccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHH
Q 011424 265 -----------------KEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGE 327 (486)
Q Consensus 265 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 327 (486)
.+.+++++....+++++|+++...+..++..........+.|.|+.+. +|+++.++++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-----~g~s~~~~g~ 295 (485)
T TIGR00711 221 ILILSITGLVAIIAFVVWELTDDNPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQV-----LGYTALQAGL 295 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHH
Confidence 011122233334678889888877777777776667777778887655 6899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 011424 328 VLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFIL 407 (486)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (486)
...+..++.+++.+ ..+++.||.++|+....+..+..++...+.+.... ....+ ......++.+++.....+.....
T Consensus 296 ~~~~~~~~~~~~~~-~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~l~g~g~~~~~~~~~~~ 372 (485)
T TIGR00711 296 HILPVGLAPMLSSP-IAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTP-DTPFL-AIALPQFIRGFGMGCFFMPLTTI 372 (485)
T ss_pred HHHHHHHHHHHHHH-HHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCC-CCCHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988 55566777899888877776666555554321111 11111 22222333444444444455555
Q ss_pred hhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHH
Q 011424 408 QNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSW 445 (486)
Q Consensus 408 ~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 445 (486)
..+.+|+++++++.|+.+..+.+|+.+|+.+.|.+.+.
T Consensus 373 ~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 373 ALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred HHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778999999999999999999999999999999874
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=268.41 Aligned_cols=373 Identities=14% Similarity=0.062 Sum_probs=268.8
Q ss_pred HHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHH
Q 011424 43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV 122 (486)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~ 122 (486)
+..+....++..++.....+.+|.+.++++.++.+ .|++.+.+.++..+++++.|+++||+|||+++..+.++.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~ 92 (417)
T PRK10489 19 FRAVFIARFISIFGLGLLGVAVPVQIQMMTGSTLQ------VGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTC 92 (417)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHH
Confidence 33455556777778888889999999999988888 999999999999999999999999999999999988887
Q ss_pred HHHHHHHhc-----cchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhccc
Q 011424 123 VIFNTLFGL-----SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP 196 (486)
Q Consensus 123 ~~~~~~~~~-----a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~ 196 (486)
+++.+..+. .++++.+++.|+++|++.+...+. .+++.|+.|+++|+++.++.....++|..+||.+++.+.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~- 171 (417)
T PRK10489 93 GLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIA- 171 (417)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH-
Confidence 777655432 578899999999999998887776 8899999999999999999999999999999999999987
Q ss_pred CccCCcccccccccccCCChhhHHHHHHHHHHHHHHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCCCccc
Q 011424 197 AEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKK 276 (486)
Q Consensus 197 ~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (486)
..||+ ..+.+.++..++..+..+.+||++++++++++.. ++.....+
T Consensus 172 ------~~~~~---------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------------------~~~~~~~~ 218 (417)
T PRK10489 172 ------AGGVA---------WNYGLAAAGTFITLLPLLRLPALPPPPQPREHPL------------------RSLLAGFR 218 (417)
T ss_pred ------HHhhH---------HHHHHHHHHHHHHHHHHHhCCCCCCCCcccccch------------------HHHHHHHH
Confidence 34444 3335555555555555666777543321111000 00011234
Q ss_pred ccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 011424 277 SLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMV 356 (486)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (486)
..+++|.++...+..++... ......++|.|..+. +|.++.+.+++.....++.+++.+ ..+++.||.++++.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~-----~g~~~~~~g~~~~~~~~g~~ig~~-~~~~l~~~~~~~~~ 291 (417)
T PRK10489 219 FLLASPVVGGIALLGGLLTM-ASAVRVLYPALADEV-----WQMGAAQIGLLYAAVPLGAALGAL-TSGWLAHSARPGLL 291 (417)
T ss_pred HHHcChHHHHHHHHHHHHHH-HHhHHHhhHHHHHhc-----cCCChhHhHHHHHHHHHHHHHHHH-HHHHhhhccCcchH
Confidence 56677776655544443322 234455666666543 688889999999999999999988 56667776566666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHh
Q 011424 357 ARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGP 436 (486)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~ 436 (486)
+..+..+..+....+.... .+....+..++.+.+.....+...++..+..|++.||+++|+.+...++|..++|
T Consensus 292 l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~ 365 (417)
T PRK10489 292 MLLSTLGSFLAVGLFGLMP------MWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGA 365 (417)
T ss_pred HHHHHHHHHHHHHHHHccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHH
Confidence 6666555544444433221 1112223333344444444556677888889999999999999999999999999
Q ss_pred hhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhc
Q 011424 437 AGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK 478 (486)
Q Consensus 437 ~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~ 478 (486)
.+.|.+.+.. |+...+...+++.++..++...
T Consensus 366 ~l~G~l~~~~----------g~~~~~~~~~~~~~~~~~~~~~ 397 (417)
T PRK10489 366 ALLGGLGAMM----------TPVASASASGFGLLIIGVLLLL 397 (417)
T ss_pred HHHHHHHHHh----------chhhHHHHHHHHHHHHHHHHHH
Confidence 9999999987 6777777766665555444433
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-33 Score=270.13 Aligned_cols=388 Identities=11% Similarity=0.067 Sum_probs=255.6
Q ss_pred hhHHHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHH
Q 011424 40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT 119 (486)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~ 119 (486)
++.+...+...+..........+.+|.+.+|+|.+..+ .+++.+.+.+++.+++++.|+++||+|||+++..+.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~------~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~ 108 (476)
T PLN00028 35 MRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSD------IGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLL 108 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 44555666677777777788889999999999999998 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhhccchhhHHHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCcc
Q 011424 120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK 199 (486)
Q Consensus 120 ~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~ 199 (486)
++++++.++++++++++.++++|++.|++.+...+...+++|++|+++|++++++.....++|..+++.+.+.+......
T Consensus 109 ~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~ 188 (476)
T PLN00028 109 MLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKD 188 (476)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998776655677889999999999999999888788888777766554321000
Q ss_pred --CCcccccccccccCCChhhHHHHHHHHHHHHHHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCCCcccc
Q 011424 200 --YPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKS 277 (486)
Q Consensus 200 --~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (486)
..+.. +||..+.+.+++.++..+..++++++++..+.++ .+ +.. +.++.+....+++
T Consensus 189 ~~~~~~~---------gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~~~~~--~~-------~~~---~~~~~~~~~~~~~ 247 (476)
T PLN00028 189 AGAPSFT---------AWRIAFFVPGLLHIIMGILVLTLGQDLPDGNYRE--LK-------KSG---TMPKDSFSKVLRY 247 (476)
T ss_pred cCCcchh---------hhHHHHHHHHHHHHHHHHHHHHHcCcCCCCchhh--HH-------hcC---ccccccHHHHHHH
Confidence 00112 4555556766666655544445554322211000 00 000 0000001123455
Q ss_pred cccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH--
Q 011424 278 LLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIM-- 355 (486)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 355 (486)
.++++++|...+.+++.......+..+.|.|+.+. +|++..+++.+....+++.+++++ ..+++.||++||+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~g~s~~~a~~~~~~~~~~~~ig~~-~~G~lsDr~~~r~~~ 321 (476)
T PLN00028 248 GVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDR-----FGLSLETAGAIAASFGLMNLFARP-AGGYLSDVAARRFGM 321 (476)
T ss_pred HHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHhcCc
Confidence 67788887776666555554455566677776443 689999999999999999999998 5666666666541
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHH
Q 011424 356 -----VARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSL 430 (486)
Q Consensus 356 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 430 (486)
.......+..+....+... . ..+. ..+..++.+++.....+..+.+..+. +++.+|++.|+.+..+.+
T Consensus 322 ~~r~~~~~~~~~l~~i~~~~~~~~---~--~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~g~l 394 (476)
T PLN00028 322 RGRLWALWIVQTLGGVFCIWLGRA---N--SLGA-AIVVMILFSIFVQAACGATFGIVPFV-SRRSLGVISGLTGAGGNV 394 (476)
T ss_pred chhHHHHHHHHHHHHHHHHHhccc---c--hHHH-HHHHHHHHHHHHHHhhhhhcccCccc-ChhhchhhhhhhhccccH
Confidence 1111111111111111111 1 1111 11112222222223334455555664 457899999998777777
Q ss_pred HHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhc
Q 011424 431 FKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK 478 (486)
Q Consensus 431 g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~ 478 (486)
|++++|.+. +... . .+|...|++.+++.+++.++.++
T Consensus 395 g~~i~~~l~----~~~~-~------~~y~~~f~~~~~~~~i~~~~~~~ 431 (476)
T PLN00028 395 GAVLTQLLF----FTGS-S------YSTETGISLMGVMIIACTLPVAF 431 (476)
T ss_pred HHHHHHHHH----HhcC-C------ccHhhHHHHHHHHHHHHHHHHHh
Confidence 776666554 3210 0 15888999988888888777765
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-32 Score=262.93 Aligned_cols=363 Identities=16% Similarity=0.111 Sum_probs=238.5
Q ss_pred hHHHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHH-HHH-----HHHHHHHhhhhhhhhhhhcCCchh
Q 011424 41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYV-GSS-----FMFGRALTSVFWGLVADRYGRKPV 114 (486)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~s~-----~~~~~~i~~~~~G~l~dr~Grr~~ 114 (486)
+.....+++.++++++...+++..|.+.+|++.++.+ .+.+ .+. ..++..+++++.|+++||+|||++
T Consensus 15 ~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~ 88 (434)
T PRK15075 15 RAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNE------FASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKG 88 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc------hHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHH
Confidence 4466788899999999999999999999999998876 4433 222 233345789999999999999999
Q ss_pred hhHHHHHHHHHHHHHhccchHH--------HHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHH
Q 011424 115 IIMGTASVVIFNTLFGLSVNFW--------MAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLII 185 (486)
Q Consensus 115 l~~~~~~~~~~~~~~~~a~~~~--------~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i 185 (486)
++.+.+++++++++++++++++ .++++|+++|++.|...+. ..+++|++|+++|++++++...+.++|..+
T Consensus 89 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~ 168 (434)
T PRK15075 89 LIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVF 168 (434)
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987 4689999999999888775 899999999999999999999999999988
Q ss_pred HhhhhhhhcccCccCCcccccccccccCCChhhHHHHHHHHHHHHHHHHhcCCcccCCCCCCCcccchhhhccccccchh
Q 011424 186 GPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVK 265 (486)
Q Consensus 186 g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (486)
++.+++.+.....+ ...- .++||.++.+..+...+........||+++..++++
T Consensus 169 g~~~g~~l~~~~~~-------~~~~-~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~------------------ 222 (434)
T PRK15075 169 AALLGYLLNQWLSP-------AQMA-EWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARKH------------------ 222 (434)
T ss_pred HHHHHHHHHHhCCH-------HHHh-ccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhh------------------
Confidence 88888877531100 0000 345565556543332222222222333221100000
Q ss_pred hhcccCCCcccccccchhhHHHH-HHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHH
Q 011424 266 EEEGREATPKKSLLKNWPLMSSI-IVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLY 344 (486)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (486)
+.+.....++..++++.+... ...++..........+.|.|+.+. +|++..+.++......++.+++.+ ..
T Consensus 223 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~g~~~~~~~~~~~~~~~~~~~~~~-~~ 294 (434)
T PRK15075 223 --RPSMREIFRSLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTV-----LHLSAADSLLVTLCVGVSNFIWLP-IG 294 (434)
T ss_pred --ccccccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHH-HH
Confidence 000011122233444443332 222223333344555667666543 688888888888888888888888 66
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHH-HHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhH
Q 011424 345 PFLERILGPIMVARIAGVLTIPLLT-SYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGI 423 (486)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 423 (486)
+++.||++||+....+..+...... .+..... ..... .......+.+.+.....+....+..|.+|++.|+++.|+
T Consensus 295 g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~ 371 (434)
T PRK15075 295 GALSDRIGRRPVLIAFTVLAILTAYPALSWLVA--APSFA-RMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSL 371 (434)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHc--CCchH-HHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeH
Confidence 7777788988887665444322211 1111111 11111 111111222223334445556778899999999999999
Q ss_pred HHHHHH-HHHHHHhhhHHHHHHHH
Q 011424 424 AMTGMS-LFKAAGPAGGGALFSWA 446 (486)
Q Consensus 424 ~~~~~~-~g~~~~~~~~g~l~~~~ 446 (486)
.+.+.. +++.++|.+.|++.|..
T Consensus 372 ~~~~~~~~~g~~~p~~~g~i~~~~ 395 (434)
T PRK15075 372 AYSLATAIFGGFTPAISTWLIHVT 395 (434)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhc
Confidence 766555 45888999999999987
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=277.57 Aligned_cols=371 Identities=16% Similarity=0.173 Sum_probs=262.5
Q ss_pred ccHHHHHHHhccc---ccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHhccchHHHH
Q 011424 62 PFLYFMIKDFQIA---KREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMA 138 (486)
Q Consensus 62 ~~~~~~~~~~~~~---~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l 138 (486)
+..|.+.+|++++ ..+ .+++.+++.++..+++++.|+++||+|||++++++.++.+++.+++++++|++.+
T Consensus 110 ~~~~~i~~e~~l~c~~~~~------~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~ 183 (505)
T TIGR00898 110 TFSSTIVTEWDLVCEDAWK------VDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVF 183 (505)
T ss_pred cccccEEEEecceechHHH------HHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence 5678889999998 666 8999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccCCcccccccccccCCChh
Q 011424 139 VLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFL 217 (486)
Q Consensus 139 ~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~ 217 (486)
++.|++.|++.+...+. .+++.|++|+++|+++.++...+..+|.+++|.++..+.+ ||.
T Consensus 184 ~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-------------------wr~ 244 (505)
T TIGR00898 184 LVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD-------------------WRW 244 (505)
T ss_pred HHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH-------------------HHH
Confidence 99999999998887775 9999999999999999999999999999999998866542 455
Q ss_pred hHHHHHHHHHHHHHHHHhcCCcccCCCCCCCcccch--hhhccccc----------c--chhhhcccCCCcccccccchh
Q 011424 218 PCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVS--YDALESAS----------A--EVKEEEGREATPKKSLLKNWP 283 (486)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~--~~~~~~~~----------~--~~~~~~~~~~~~~~~~~~~~~ 283 (486)
.+.+.+++.++..+..+++||+|++...+++.++.. .++..+.. . ++++.+++.....++++++|.
T Consensus 245 ~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 324 (505)
T TIGR00898 245 LQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPN 324 (505)
T ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChH
Confidence 556777777766666688999987643332221111 01100000 0 000011112245678889988
Q ss_pred hHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 011424 284 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVL 363 (486)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (486)
++...+...+..+.........+.+. ...+.+.. ......++..+++.+ ...++.||+|||+.+..+..+
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~---~~~~~~~~~~i~~~~-~~~~l~dr~grr~~~~~~~~~ 394 (505)
T TIGR00898 325 LRKTTLCLMMLWFTTAFSYYGLVLDL------GNLGGNIY---LDLFISGLVELPAKL-ITLLLIDRLGRRYTMAASLLL 394 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc------cccCCChH---HHHHHHHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHH
Confidence 87766655443332222211122221 12344432 333344566667766 566777788999998888777
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHH
Q 011424 364 TIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALF 443 (486)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~ 443 (486)
..++.+.+.+.... ..+ ......++..++.....+..+.+..|.+|++.|+++.|+.++...+|++++|.+.+ +.
T Consensus 395 ~~~~~l~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~ 469 (505)
T TIGR00898 395 AGVALLLLLFVPVD---LYF-LRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LG 469 (505)
T ss_pred HHHHHHHHHHcCCC---chH-HHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HH
Confidence 77666655544321 111 22222333334445566777888999999999999999999999999999999998 43
Q ss_pred HHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhccccccCC
Q 011424 444 SWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQRH 485 (486)
Q Consensus 444 ~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 485 (486)
+ . ++..++.+++++.+++.++.++ +||++
T Consensus 470 ~-~----------~~~~~~~~~~~~~~~~~~~~~~--lpet~ 498 (505)
T TIGR00898 470 E-K----------WLFLPLVLFGGLALLAGILTLF--LPETK 498 (505)
T ss_pred H-H----------HHhhHHHHHHHHHHHHHHHHHc--CcCCC
Confidence 3 2 3566778888888777777666 67765
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-32 Score=261.63 Aligned_cols=388 Identities=13% Similarity=0.098 Sum_probs=277.9
Q ss_pred hHHHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHH
Q 011424 41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA 120 (486)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~ 120 (486)
..+..+.+..++..+......+.+|.+++++|.++.+ .|++.+.+.+++.+++++.|++.||+|||+++..+.+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~------~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~ 99 (438)
T PRK10133 26 IPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQ------AGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLF 99 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 4455677777888888899999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHH---hccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhccc
Q 011424 121 SVVIFNTLF---GLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP 196 (486)
Q Consensus 121 ~~~~~~~~~---~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~ 196 (486)
+++++.+++ .+++|++.++++|+++|++.|...+. .+++.|+.|+++|.+.++..+..+.+|..++|.+++.+...
T Consensus 100 ~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~ 179 (438)
T PRK10133 100 LYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILS 179 (438)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999875 56899999999999999999988886 88899988888777789999999999999999998876521
Q ss_pred Ccc-----------CCcccccccccccCCChhhHHHHHH-HHHHHHHH-HHhcCCcccCCCCCCCcccchhhhccccccc
Q 011424 197 AEK-----------YPNLFSSESLFGKFPYFLPCLCISL-FAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAE 263 (486)
Q Consensus 197 ~~~-----------~~~~~gw~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (486)
..+ .....+||..+ ..+||.++..... ..++.++. ....||.+++++ ++ .+
T Consensus 180 ~~~~~~~~~~~~l~~~~~~~w~~~~-~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~~--~~-~~------------ 243 (438)
T PRK10133 180 NVPHQSQDVLDKMTPEQLSAYKHSL-VLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNH--SD-AK------------ 243 (438)
T ss_pred CCcccchhhhhccChhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc--cc-cc------------
Confidence 100 00012566544 3567777754332 22222222 233444221100 00 00
Q ss_pred hhhhcccCCCcccccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHH
Q 011424 264 VKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSL 343 (486)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 343 (486)
+.+.....++++++|.++...+..++..........+.+.|+.+ +.+|+++.++++......++.+++++ .
T Consensus 244 ----~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~----~~~g~s~~~ag~~~~~~~~~~~vG~~-~ 314 (438)
T PRK10133 244 ----QGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVE----EIPGMTAGFAANYLTGTMVCFFIGRF-T 314 (438)
T ss_pred ----ccchhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hcCCCCHHHHHHHHHHHHHHHHHHHH-H
Confidence 00111234567889988776666666665555555666656421 22699999999999999999999998 6
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhH
Q 011424 344 YPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGI 423 (486)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 423 (486)
++++.||+++|+.+..+..+....+.+..+.. .. . ......+.+++.....|..++...+..| ++.+++.++
T Consensus 315 ~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~---~~--~--~~~~~~l~glg~~~i~P~~~s~a~~~~~-~~~~~as~l 386 (438)
T PRK10133 315 GTWLISRFAPHKVLAAYALIAMALCLISAFAG---GH--V--GLIALTLCSAFMSIQYPTIFSLGIKNLG-QDTKYGSSF 386 (438)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcC---Ch--H--HHHHHHHHHHHHHHHHHHHHHHHHcccc-hhhccchhH
Confidence 66677777998888877666655444433321 11 1 1223344566778888999998888776 457788888
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHhhhcCCCCCCc-hhHHHHHHHHHHHHHHHHhhc
Q 011424 424 AMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPG-SQMVFFVLNVVEAIGVLMTFK 478 (486)
Q Consensus 424 ~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g-~~~~f~~~~~~~~~~~~~~~~ 478 (486)
.. ....|+.++|.+.|.+.|.. | .+..|++...+.+....+...
T Consensus 387 ~~-~~~~g~~~~~~i~G~l~~~~----------g~~~~~~~v~~~~~~~~~~~~~~ 431 (438)
T PRK10133 387 IV-MTIIGGGIVTPVMGFVSDAA----------GNIPTAELIPALCFAVIFIFARF 431 (438)
T ss_pred Hh-HHhccchHHHHHHHHHHHhc----------cchHHHHHHHHHHHHHHHHHHHH
Confidence 86 45578999999999998876 5 566776655555555544433
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=261.87 Aligned_cols=372 Identities=12% Similarity=0.057 Sum_probs=256.5
Q ss_pred HHHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHH
Q 011424 42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS 121 (486)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~ 121 (486)
.++.++.+.++..++........+.+.+|++.++.+ .+++.+.+.+++.++++++|+++||+|||++++++.++
T Consensus 4 ~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~ 77 (393)
T PRK11195 4 GFYAIMAAQFFSALADNALLFAAIALLKELHYPDWS------QPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGI 77 (393)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH------HHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHH
Confidence 356677888888887777777777788999999888 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccC
Q 011424 122 VVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY 200 (486)
Q Consensus 122 ~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~ 200 (486)
.+++++.++++++. ++.|+++|++.+...|+ .+++.|++|+++|++++++.+....+|.++||.+++++.+
T Consensus 78 ~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~----- 149 (393)
T PRK11195 78 KLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALAD----- 149 (393)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 99998888777664 78999999999999997 9999999999999999999999999999999999999987
Q ss_pred CcccccccccccCCChhhHHHHHHHHHHHHHHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCCCccccccc
Q 011424 201 PNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLK 280 (486)
Q Consensus 201 ~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (486)
. .|+.++.+.....++..+....+||++++++.++++.....++ .....+.+++
T Consensus 150 --~----------~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~l~~ 203 (393)
T PRK11195 150 --P----------HAEAALAVCALIYLLAALFNLFIPRLGARRPGQSWNPIALLRD--------------FFHACRVLWR 203 (393)
T ss_pred --H----------HHHHHHHHHHHHHHHHHHHHhcCCCCcccccccCCCHHHHHHH--------------HHHHHHHHHh
Confidence 1 1344444444433444445567787654322111110000000 0011345677
Q ss_pred chhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 011424 281 NWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIA 360 (486)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (486)
+|.+........+............+.|.++. +|.++.+.|+.....+++.+++++.. +++.|+.++++....+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----lg~s~~~~G~~~~~~~~g~i~g~~~~-~~l~~~~~~~~~~~~g 277 (393)
T PRK11195 204 DKLGRFSLAGTTLFWGAGATLRFLVLAWAPVA-----LGITLNQPAYLQAVVAIGIAVGAGAA-ARLVTLETVLRVLPAG 277 (393)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCChhHHHHHHHHHHHHHHHHHHHH-HHHhcCCcccchHHHH
Confidence 77766554444333333334444455555444 68899999999999999999999854 4555555666666555
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCc-hhhHHhHHHHHHHHHHHHHhhhH
Q 011424 361 GVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQ-RGAANGIAMTGMSLFKAAGPAGG 439 (486)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~g~~~~~~~~g~~~~~~~~ 439 (486)
..+ ......+.... ..+ ...+..++.+.+.....+...+..++..|++. +|++.++.+...+++..++..+.
T Consensus 278 ~~~-~~~~~~~~~~~-----~~~-~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~ 350 (393)
T PRK11195 278 ILM-GLVVLLMALQH-----SLL-PAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLY 350 (393)
T ss_pred HHH-HHHHHHHHHHh-----HHH-HHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHH
Confidence 432 22222222111 112 22233333444444445556666777655554 79999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhh
Q 011424 440 GALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTF 477 (486)
Q Consensus 440 g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~ 477 (486)
+.+ +.. |.+..+.+.+...+++..+.+
T Consensus 351 ~~~-~~~----------~~~~~~~~~~~~~~~~~~~~~ 377 (393)
T PRK11195 351 SLL-VKL----------GVPVVAVIVGFGLLVALAMAL 377 (393)
T ss_pred HHH-HHc----------CCCHHHHHHHHHHHHHHHHHH
Confidence 866 333 566666665555555544443
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=269.06 Aligned_cols=401 Identities=14% Similarity=0.134 Sum_probs=276.0
Q ss_pred CCChhHHHHHHHHHHHhhhhhhhhcccHHHHHH----------------------HhcccccchhhhhHhHHHHHHHHHH
Q 011424 37 GLPITELFSIWIIVLCTALPISSLFPFLYFMIK----------------------DFQIAKREEDIGSYAGYVGSSFMFG 94 (486)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~g~~~s~~~~~ 94 (486)
+.++.....++++..+.+.++...+...+.+.+ |++.+..+ .|++.+.+.++
T Consensus 15 ~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~g~~~s~~~~~ 88 (465)
T TIGR00894 15 SFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGAL------QGLILSSHFYG 88 (465)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHH------hhHHHHHHHHH
Confidence 334455556777777888888888887777765 77888888 99999999999
Q ss_pred HHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHhcc--chHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhH
Q 011424 95 RALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS--VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALG 171 (486)
Q Consensus 95 ~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a--~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~ 171 (486)
+.+++++.|+++||+|||+++.++.++++++.+++.++ .+++.+++.|+++|++.+...+. ..++.|++|+++|+++
T Consensus 89 ~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~ 168 (465)
T TIGR00894 89 QIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRL 168 (465)
T ss_pred HHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHH
Confidence 99999999999999999999999999999998887554 56889999999999999998886 9999999999999999
Q ss_pred hhHHHHHhhhhHHHHhhhhhhhcccCccCCcc-cccccccccCCChhhHHHHHHHHHHHHHHHH-hcCCcccCCCCCCCc
Q 011424 172 LSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL-FSSESLFGKFPYFLPCLCISLFAFGVTIAAF-WLPETLHRHNDDDDS 249 (486)
Q Consensus 172 ~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~~~-~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~ 249 (486)
+++...+..+|.+++|++++.+.+ . .|||..| .+.++..++..+.++ +.+|+|+.++..+++
T Consensus 169 ~~~~~~~~~~g~~i~~~l~~~l~~-------~~~gw~~~f---------~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 232 (465)
T TIGR00894 169 LGMSTSGFQLGTFIFLPISGWLCE-------SWGGWPMIF---------YVFGIVGCAWSLLWFVFPADDPSIHPCISKF 232 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-------ccCCCCeeh---------hhhhHHHHHHHHHHHHHhcCCcccCCCCCHH
Confidence 999999999999999999999987 3 2555544 566666655544443 445555432221111
Q ss_pred ccchhhhccccccchhhhcccCCCcccccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHH
Q 011424 250 CDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVL 329 (486)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 329 (486)
++ +..++..+++ ..+.+....++++++++.++...+..++.......+..+.|.|+.+. +|++..+.++..
T Consensus 233 ~~---~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~-----~g~s~~~~g~~~ 303 (465)
T TIGR00894 233 EK---KYINSSLQGQ-KGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWV-----LRVSGKENGLLS 303 (465)
T ss_pred HH---HHHHhhcccc-cCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCcChHHhHHHH
Confidence 11 1111110000 00111233577889999999988888888877777778888887654 688999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHH-----HH-HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhh
Q 011424 330 AITGFSLLVFQLSLYPFLERILGPIM-----VA-RIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITG 403 (486)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (486)
....++.+++.+ ..+++.||.++|+ .. .....+.........+.......... ..++...+.+.+.....+.
T Consensus 304 ~~~~~~~~i~~~-~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 381 (465)
T TIGR00894 304 SLPYLFAWLCSI-FAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFY-LTIIILTLANAVSSGPLAG 381 (465)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchH-HHHHHHHHHHHHhhhhhhh
Confidence 998999999988 4555555443221 11 11111111111111111111011111 1122222222233333344
Q ss_pred hhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhc
Q 011424 404 LFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK 478 (486)
Q Consensus 404 ~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~ 478 (486)
......+..| +.+|.+.|+.+..+.+++.++|.+.|.+.+.... .+|...|.+.+++.+++.++...
T Consensus 382 ~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~-------~~~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 382 VLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSK-------NVWLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred hhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCc-------hHHHHHHHHHHHHHHHHHHHeee
Confidence 4445556555 5899999999999999999999999988764211 14888999998888888776655
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-32 Score=257.32 Aligned_cols=380 Identities=14% Similarity=0.151 Sum_probs=263.9
Q ss_pred hHHHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHH
Q 011424 41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA 120 (486)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~ 120 (486)
+.+....++.++.........+.++.+.+|+|.++.+ .|++.+.+.++..+++++.|+++||+|||+++..+.+
T Consensus 13 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~ 86 (402)
T TIGR00897 13 LNLLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQ------SASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLL 86 (402)
T ss_pred chhhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHH------hHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 4566677777777777777777788888999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh---c-cchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhH-HHHhhhhhhhc
Q 011424 121 SVVIFNTLFG---L-SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGL-IIGPALGGFLA 194 (486)
Q Consensus 121 ~~~~~~~~~~---~-a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~-~ig~~l~~~l~ 194 (486)
+.+++.+++. + .++++.+++.|+++|++.+...+. .+.+.|++|+++|++++|+.+.+.++|. .++|++++++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~ 166 (402)
T TIGR00897 87 LWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAI 166 (402)
T ss_pred HHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9988876553 3 368999999999999987776664 7888999999999999999999999997 68999999988
Q ss_pred ccCccCCcccccccccccCCChhhHHHHHHHHHHHHHHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCCCc
Q 011424 195 QPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATP 274 (486)
Q Consensus 195 ~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (486)
+ .+||+..+ |+..+.. .+..++..+..+|.+++++++ ++.+ .++..+.
T Consensus 167 ~-------~~g~~~~~----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~----------------~~~~~~~ 214 (402)
T TIGR00897 167 P-------AFGEMNTL----WSALAFV----LTGGVIALFSNKDIFTPQHMQ-TREK----------------FSELGKA 214 (402)
T ss_pred c-------ccchHHHH----HHHHHHH----HHHHHHHHhccCCCCCccccc-CCcc----------------hhhHHHH
Confidence 7 55554332 3322211 111222233344432211110 0000 0000113
Q ss_pred ccccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 011424 275 KKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPI 354 (486)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (486)
.++++++|+++...+..++..........+.|.|..+ +|++..+.+.......++..++.+ ..+++.||.+||
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~------~g~s~~~~~~~~~~~~~~~~ig~~-~~g~l~dr~~~~ 287 (402)
T TIGR00897 215 ATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVAE------LGFSTSEWLQIWGTFFFTNIVFNV-IFGIVGDKLGWM 287 (402)
T ss_pred HHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCChhHHHHHHHHHHHHHHHHHH-HHHHHHHhhcch
Confidence 4567889998877777766666666666777766532 588888889888888899999998 455566667777
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHH
Q 011424 355 MVARI-AGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKA 433 (486)
Q Consensus 355 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ 433 (486)
+.... +.....+....+...........+ ...+..+..+.+.....+. .....+ .++++||++.|+.+....+++.
T Consensus 288 ~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~-~~~~~~-~~~~~~g~~~g~~~~~~~lg~~ 364 (402)
T TIGR00897 288 NTVRWFGGVGCGIFTLALYYIPQHFGHSFA-VALIIAIALGIFLAGYVPL-AAVFPT-LAPKHKGAAMSVLNLSAGLSAF 364 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHccCCcHH-HHHHHHHHHHHHHHHHHHH-HHHHHh-hCcchhHHHHHHHHHHHHHHHH
Confidence 65532 222222222222222111111111 1222233333333333333 344556 4557899999999999999999
Q ss_pred HHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhc
Q 011424 434 AGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK 478 (486)
Q Consensus 434 ~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~ 478 (486)
++|.+.|.+.+.. |+...+++.+++.+++.++..+
T Consensus 365 ~gp~i~g~l~~~~----------g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 365 LAPAIAVLFIGFF----------GAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred HHHHHHHHHHhhc----------chHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987 7888999999888888777665
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-32 Score=259.79 Aligned_cols=353 Identities=16% Similarity=0.119 Sum_probs=256.9
Q ss_pred HHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHH
Q 011424 45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI 124 (486)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~ 124 (486)
.+.+..++..++...+.|.+|.+.+++|.++.+ .++..+.+.+++.+++++.|+++||+|||+++.++..+..+
T Consensus 17 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~ 90 (406)
T PRK15402 17 CLVLFEFATYIANDMIQPGMLAVVEDFNAGAEW------VPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFIL 90 (406)
T ss_pred HHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 455566667778888999999999999999998 99999999999999999999999999999999999999999
Q ss_pred HHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccCCcc
Q 011424 125 FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL 203 (486)
Q Consensus 125 ~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~~~ 203 (486)
+.+++.++++++.+++.|+++|++.+...+. .+++.|.+|+++|.+.+++......+|..++|.+++.+.+ .
T Consensus 91 ~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~-------~ 163 (406)
T PRK15402 91 TCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIH-------V 163 (406)
T ss_pred HHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------c
Confidence 9999999999999999999999998887775 8899999999999999999988888999999999999987 4
Q ss_pred cccccccccCCChhhHHHHHHHHHHHHH-HHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCCCcccccccch
Q 011424 204 FSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNW 282 (486)
Q Consensus 204 ~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (486)
.+||+. +.+.++..++..+ .....||++++.+++.+. ++.....+++++||
T Consensus 164 ~~w~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~ 215 (406)
T PRK15402 164 LPWRGM---------FVLFAALAALSFFGLWRAMPETAGRVGEKLSL-------------------KELGRDYKLVLKNR 215 (406)
T ss_pred cCccHH---------HHHHHHHHHHHHHHHHHhCCCCCccccccccH-------------------HHHHHHHHHHHcCc
Confidence 555543 3555555444433 344567654322111000 00112345678888
Q ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 011424 283 PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGV 362 (486)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (486)
+++...+..++.......+....|.++.+. +|+++.+.+.......++.+++.+ ..+++.||.++++....+..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-----~g~~~~~~g~~~~~~~~~~~~g~~-~~g~l~~r~~~~~~~~~~~~ 289 (406)
T PRK15402 216 RFVAGALALGLVSLPLLAWIALSPVILISG-----EQLSSYEYGLLQVPVFGALIAGNL-TLARLTSRRPLRSLIRMGLW 289 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCHHHHHHHHHH
Confidence 888776666555544444444556554433 688888888888777778888877 55566677788888877776
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHH
Q 011424 363 LTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGAL 442 (486)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l 442 (486)
...++...+......... .+....+..++.+.+.....+........ .+++++|++.++.+....++..+|+.+.+.+
T Consensus 290 ~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~g~g~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l 367 (406)
T PRK15402 290 PMVAGLLLAALATVISSH-AYLWLTAGLSLYAFGIGLANAGLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVGIELSKHA 367 (406)
T ss_pred HHHHHHHHHHHHHHcccc-cHHHHHHHHHHHHHHHHHHhhhHHHHHhh-hccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 666555555443311111 11122233333333333334444444333 4558999999999999999999999999998
Q ss_pred HHHH
Q 011424 443 FSWA 446 (486)
Q Consensus 443 ~~~~ 446 (486)
++..
T Consensus 368 ~~~~ 371 (406)
T PRK15402 368 YLGG 371 (406)
T ss_pred ccCC
Confidence 8765
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-33 Score=267.24 Aligned_cols=403 Identities=13% Similarity=0.043 Sum_probs=266.8
Q ss_pred hHHHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHH
Q 011424 41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA 120 (486)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~ 120 (486)
+.++...+.....+..........|.+.+ +|.++++ .+++.+++.++..+++++.|+++||+|||+++.++.+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~------~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~ 99 (438)
T TIGR00712 27 QVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGE------LGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLI 99 (438)
T ss_pred HHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhH------hHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHH
Confidence 33444555555666666666777787765 6999998 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcc----chHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcc
Q 011424 121 SVVIFNTLFGLS----VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (486)
Q Consensus 121 ~~~~~~~~~~~a----~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~ 195 (486)
+.+++.+++++. ++++.+.+.|++.|++.|...+. ...+.|++|+++|++++++.+.+.++|..+++.+.+...+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~ 179 (438)
T TIGR00712 100 LSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMA 179 (438)
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 999998887764 56788899999999998887774 8889999999999999999999999999999888776543
Q ss_pred cCccCCcccccccccccCCChhhHHHHHHHHHHH-HHHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCCC-
Q 011424 196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREAT- 273 (486)
Q Consensus 196 ~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 273 (486)
. ..+ ||..+.+.++..++. ++..+++||+++..+.++.++.+. +..++ ..++.+.+.+.+.
T Consensus 180 ~------~~~---------w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~ 242 (438)
T TIGR00712 180 W------FND---------WHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYRN-DYPDD-YNEKAEQELTAKEI 242 (438)
T ss_pred H------hhh---------hHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhccc-ccccc-cccccccccchHHH
Confidence 1 234 444446666655553 445566787664322111110000 00000 0000000000000
Q ss_pred cccccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011424 274 PKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGP 353 (486)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (486)
..+..++++.++...+..++......+...+.|.|+.+. .|+++.++++...+..+.++++++ ..+++.||.++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~g~s~~~~~~~~~~~~~~~~ig~~-~~g~l~dr~~~ 316 (438)
T TIGR00712 243 FMQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEV-----KHFALDKSSWAYFLYEYAGIPGTL-LCGWMSDKVFK 316 (438)
T ss_pred HHHHHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHc-----cCCChhhHHHHHHHHHHHHHHHHH-HHHHHHHHhcc
Confidence 012467888888877766666655566667788887754 688999999999999999999988 55666666643
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHH
Q 011424 354 IMVARIAGVLTIPLL-TSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFK 432 (486)
Q Consensus 354 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~ 432 (486)
++....+........ ....+.... ....+... ...+..+....+..........|.+|++.||++.|+.+...++++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg 394 (438)
T TIGR00712 317 GNRGATGVFFMTLVTIAVIVYWMNP-AGNPLVDM-ICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGG 394 (438)
T ss_pred CcccHHHHHHHHHHHHHHHHHHhcC-CCchHHHH-HHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhh
Confidence 221122222211111 111111110 01111111 111112211112222223456788899999999999999988875
Q ss_pred -HHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhccccccCCC
Q 011424 433 -AAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQRHD 486 (486)
Q Consensus 433 -~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 486 (486)
+++|.+.|.+.|.. |+...|++..++.+++.+..+. ..+|+|+
T Consensus 395 ~~~gp~l~G~l~~~~----------g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 438 (438)
T TIGR00712 395 SVAASAIVGYTVDFF----------GWDGGFMVMIGGSILAVILLIV-VMIGEKR 438 (438)
T ss_pred hhhcchhHHHHHHhc----------cchHHHHHHHHHHHHHHHHHHH-HHhhccC
Confidence 68999999999987 7889998888888888777776 6777664
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-32 Score=261.29 Aligned_cols=380 Identities=20% Similarity=0.286 Sum_probs=267.1
Q ss_pred HHHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHH
Q 011424 42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS 121 (486)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~ 121 (486)
....++++.++..+......+.+|.+.+++|.+..+.. ..+.|++.+++.++..++++++|+++||+|||+++..+.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 93 (408)
T PRK09874 15 NLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSAL-NMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALG 93 (408)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHH
Confidence 35566778888888999999999999999999875411 12258999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhccchhhHHHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccCC
Q 011424 122 VVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYP 201 (486)
Q Consensus 122 ~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~ 201 (486)
.+++.+++.++++++.+++.|++.|++.+.......++.|++|+++|++++++...+..+|..++|.+++.+.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~------ 167 (408)
T PRK09874 94 MGIVMVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLAD------ 167 (408)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 99999999999999999999999999866543347888999999999999999999999999999999999987
Q ss_pred cccccccccccCCChhhHHHHHHHHHHHH-HHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCCCccccccc
Q 011424 202 NLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLK 280 (486)
Q Consensus 202 ~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (486)
.++|| ..+.+.++..++.. ...+++||+++..+++++ .+ ..+..+.++
T Consensus 168 -~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------------------~~~~~~~~~ 216 (408)
T PRK09874 168 -SYGLR---------PVFFITASVLFLCFLVTLFCIRENFQPVSKKEM-LH--------------------MREVVTSLK 216 (408)
T ss_pred -HhCHH---------HHHHHHHHHHHHHHHHHHHHhccCcccccchhh-hH--------------------HHHHHHhCc
Confidence 44444 44455555544443 334556665322111100 00 001123455
Q ss_pred chhhHHHHH-HHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 011424 281 NWPLMSSII-VYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARI 359 (486)
Q Consensus 281 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (486)
+++++.... ...............++.|..+... +........+.+....+++.+++.+ ..+++.||.++++.+..
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~l~~~~~~~-~~g~l~dr~g~~~~~~~ 293 (408)
T PRK09874 217 NPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAG--NVSNIAFISGMIASVPGVAALLSAP-RLGKLGDRIGPEKILIT 293 (408)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccccchhHHH
Confidence 666544332 2233333333344455555443210 0010112345555666777777776 55667777898888887
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhH
Q 011424 360 AGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGG 439 (486)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~ 439 (486)
+.....+..+...... ..+ ...+..++.+.+.....+...+...+..|++.+|+.+++.+....+|..++|.+.
T Consensus 294 ~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~ 367 (408)
T PRK09874 294 ALIFSVLLLIPMSFVQ-----TPL-QLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMG 367 (408)
T ss_pred HHHHHHHHHHHHHHhc-----cHH-HHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHH
Confidence 7666555444433321 111 2223334445555666777777778888999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhc
Q 011424 440 GALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK 478 (486)
Q Consensus 440 g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~ 478 (486)
|.+.+.. |++..|++.+++.+++.++.++
T Consensus 368 G~l~~~~----------g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 368 AAISANY----------GFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred HHHHhhc----------chhHHHHHHHHHHHHHHHHHHH
Confidence 9999877 8999999999888888777655
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-32 Score=268.64 Aligned_cols=390 Identities=16% Similarity=0.154 Sum_probs=263.8
Q ss_pred CChhHHHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhH
Q 011424 38 LPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM 117 (486)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~ 117 (486)
.+++.+..+++..+++.++.....+.+|.+.+++|.++.+ .+++.+.+.+++.+++++.|+++||+|||+++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 90 (496)
T PRK03893 17 AQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQ------AASLISAAFISRWFGGLLLGAMGDRYGRRLAMVI 90 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 3455667888888999999999999999999999999998 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhccc
Q 011424 118 GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP 196 (486)
Q Consensus 118 ~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~ 196 (486)
+.++.+++.+++++++|++.+++.|++.|++.+...+. .+++.|.+|+++|+++++....+..+|..++|.+++.+.+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~- 169 (496)
T PRK03893 91 SIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVP- 169 (496)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 99999999999999999999999999999998877765 8999999999999999999999999999999999999987
Q ss_pred CccCCcccccccccccCCChhhHHHHHHHHHHHHHHHHhcCCcccCCCCCCCccc--chhhhccccccchhhh-------
Q 011424 197 AEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCD--VSYDALESASAEVKEE------- 267 (486)
Q Consensus 197 ~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~------- 267 (486)
.++|| ..+.+..+..++.++....+||++++.++++++.+ ...+............
T Consensus 170 ------~~~w~---------~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (496)
T PRK03893 170 ------VWGWR---------ALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAA 234 (496)
T ss_pred ------cCCHH---------HHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHH
Confidence 44554 44344444333334444556766543221111100 0000000000000000
Q ss_pred -------cccCCCcc------------------c-ccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccc
Q 011424 268 -------EGREATPK------------------K-SLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYS 321 (486)
Q Consensus 268 -------~~~~~~~~------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 321 (486)
.......+ + ...+.+.........+...........+.|.|+.+. +|++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~-----~g~~ 309 (496)
T PRK03893 235 AALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTD-----LGYD 309 (496)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhh-----cCCC
Confidence 00000000 0 000000001111111111111122344566666433 6899
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhh
Q 011424 322 TQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSII 401 (486)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (486)
..+++.+.+...++.+++.+ ..+++.||+++|+....+..+..+....+.... ....+ ......+..+....+..
T Consensus 310 ~~~~g~~~~~~~~~~~~g~~-~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~ 384 (496)
T PRK03893 310 PHTVANVLFFSGFGAAVGCC-VGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIG---GANVW-VLGLLLFFQQMLGQGIS 384 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc---ccHHH-HHHHHHHHHHHHhcccc
Confidence 99999999999999999988 666777788988887766555444333222211 11111 11122222222333344
Q ss_pred hhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHH
Q 011424 402 TGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVE 469 (486)
Q Consensus 402 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~ 469 (486)
+....+..+.+|++.|++++|+.+....+|+.++|.+.|.+.+.. |+...+...+++.
T Consensus 385 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~----------g~~~~~~~~~~~~ 442 (496)
T PRK03893 385 GLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRL----------DLGTALASLSFSL 442 (496)
T ss_pred hhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccC----------ChHHHHHHHHHHH
Confidence 556677888899999999999999999999999999999999887 6777765544433
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-32 Score=256.69 Aligned_cols=351 Identities=17% Similarity=0.148 Sum_probs=256.7
Q ss_pred hHHHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHH
Q 011424 41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA 120 (486)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~ 120 (486)
+....+....++...+.....+.+|.+.+++|.++++ .+++.+.+.++..+++++.|+++||+|||+++..+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~ 78 (385)
T TIGR00710 5 AFALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASI------VQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLF 78 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHH
Confidence 3444555556667788889999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCcc
Q 011424 121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK 199 (486)
Q Consensus 121 ~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~ 199 (486)
+.+++.+++.++++++.+++.|++.|++.+...+. .+++.|++|+++|++++++.+....+|..++|.+++.+.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~---- 154 (385)
T TIGR00710 79 IFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILV---- 154 (385)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 99999999999999999999999999998888776 9999999999999999999999999999999999999987
Q ss_pred CCcccccccccccCCChhhHHHHHHHHHHHH-HHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCCCccccc
Q 011424 200 YPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSL 278 (486)
Q Consensus 200 ~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (486)
.+ +|+..+.+.++..++.. ...+..||++++++++++ ++.....++.
T Consensus 155 ---~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~ 202 (385)
T TIGR00710 155 ---WL---------SWHAIFAFLSLAGILLSALIFFILPETLPYEARIQI--------------------STYFETFLLL 202 (385)
T ss_pred ---Hc---------CHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccCCH--------------------HHHHHHHHHH
Confidence 33 44554456555554443 334456665433211000 0011234566
Q ss_pred ccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 011424 279 LKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVAR 358 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (486)
+++|+++...+...+.......+..+.|.++.+. +|.++.+.+.+.....++.+++++ ..+++.||.++|+...
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~g~~~~~~~~~~~~~~~-~~g~l~~~~~~~~~~~ 276 (385)
T TIGR00710 203 LKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDI-----MGVSPSVFGLLFALNIIAMIFGGF-LNGRFIKKWGAKSLLR 276 (385)
T ss_pred HcCchhHHHHHHHHHHHHHHHHHHHcChHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCHHHHHH
Confidence 7888887766665554444444444445544322 688999999999999999999988 5566667778888877
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhh
Q 011424 359 IAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAG 438 (486)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~ 438 (486)
.+..+..+....+....... ...+........+.+.+.....+.......|..| ++++++.++.+.....++.+.+.+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~ 354 (385)
T TIGR00710 277 MGLILFAVSAVLLEITAILG-LGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYL 354 (385)
T ss_pred HHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHH
Confidence 77666655555444332211 1112222233333444455556666667777666 789999999998887766666666
Q ss_pred HHH
Q 011424 439 GGA 441 (486)
Q Consensus 439 ~g~ 441 (486)
.+.
T Consensus 355 ~~~ 357 (385)
T TIGR00710 355 VSL 357 (385)
T ss_pred HHh
Confidence 663
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=254.64 Aligned_cols=363 Identities=15% Similarity=0.144 Sum_probs=258.2
Q ss_pred HHHHHhhhhhhhhcccHHH-HHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhH-HHHHHHHH
Q 011424 48 IIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM-GTASVVIF 125 (486)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~-~~~~~~~~ 125 (486)
+..++..++.+...|.+|. +.+++|.++.+ .|++.+++.+...+.+++.|+++||+||||.++. +.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~ 77 (375)
T TIGR00899 4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAM------IGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALA 77 (375)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHcccCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 4567778888899999986 46789999999 9999999999999999999999999999987654 56666677
Q ss_pred HHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhH--hhHHHHHhhhhHHHHhhhhhhhcccCccCCc
Q 011424 126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALG--LSTVSTAWGIGLIIGPALGGFLAQPAEKYPN 202 (486)
Q Consensus 126 ~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~--~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~~ 202 (486)
.+++++++|++.+++.|++.|.+.+...|. .++..|+.|+++|++. .+....+.++|.+++|++++.+.+
T Consensus 78 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~------- 150 (375)
T TIGR00899 78 CLLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLAL------- 150 (375)
T ss_pred HHHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHH-------
Confidence 788899999999999999998877777775 8888899888777754 578888889999999999999988
Q ss_pred ccccccccccCCChhhHHHHHHHHHHHHH-HHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCCCcccccccc
Q 011424 203 LFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKN 281 (486)
Q Consensus 203 ~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (486)
.++||..+.+.++..++..+ ..+++||.+++.+++++ ..+.++.+++
T Consensus 151 ---------~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~ 198 (375)
T TIGR00899 151 ---------GFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGALT-----------------------RLEVRGLLAS 198 (375)
T ss_pred ---------hcccHHHHHHHHHHHHHHHHHHHHhCCCcccCcccccC-----------------------cchhhhhhcC
Confidence 34455555676665555443 34557876543221100 0112234566
Q ss_pred hhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 011424 282 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG 361 (486)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (486)
++++......++.......+....|.|+.+. +|.++.+.+..........+++.. ..+++.||.++|+....+.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~g~~~~~~~~~~~~~~~-~~g~l~~r~g~~~~~~~~~ 272 (375)
T TIGR00899 199 RDTRLLFVACTLMWGCNILYIINMPLLIIHE-----LGLPDKLAGLMMGTAAGLEIPFML-LAGYLIKRFGKRRLMLLAA 272 (375)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhhHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHH-hHHHHHHHhcchhHHHHHH
Confidence 6666555444443333333444555555433 688888888888776666677766 5566677778888877665
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHH
Q 011424 362 VLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGA 441 (486)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~ 441 (486)
....+....+.... ..+ .......+.+.+.....+....+..|..| ++++++.++.+...++|..++|.+.|.
T Consensus 273 ~~~~~~~~~~~~~~-----~~~-~~~~~~~~~g~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~g~ 345 (375)
T TIGR00899 273 LAGVAFYTGLAADN-----SLW-ALLMLQLLNAIFIGILAGIGMLYFQDLMP-GRAGAATTLYTNTGRVGWIIAGSVGGI 345 (375)
T ss_pred HHHHHHHHHHHHHH-----HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54443333322211 112 22223333334444455666677788776 467799999999999999999999999
Q ss_pred HHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhc
Q 011424 442 LFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK 478 (486)
Q Consensus 442 l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~ 478 (486)
+.+.. |++..|.+.+++.+++.+...+
T Consensus 346 ~~~~~----------g~~~~~~~~~~~~~~~~~~~~~ 372 (375)
T TIGR00899 346 LAERW----------SYHAVYWFAIVMLIVALFCLLL 372 (375)
T ss_pred HHHhc----------cchhHHHHHHHHHHHHHHHHhe
Confidence 99887 7888999988888888777655
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=255.62 Aligned_cols=370 Identities=18% Similarity=0.218 Sum_probs=263.8
Q ss_pred HHHHHHHHHhhhhhhhhcccHHH-HHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHH
Q 011424 44 FSIWIIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV 122 (486)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~ 122 (486)
..+....++...+.....|.++. +.+++|.+..+ .|++.+.+.++..+.+++.|+++||+|||+++..+.++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~ 86 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVM------VGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMR 86 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHH------HHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHH
Confidence 44556677777777888888874 57889999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccCC
Q 011424 123 VIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYP 201 (486)
Q Consensus 123 ~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~ 201 (486)
.++.+++.++++++.+++.|+++|++.+...|. .+++.|++|+|+|++++++.+...++|..+||.+++++.+
T Consensus 87 ~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~------ 160 (400)
T PRK11646 87 AAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQ------ 160 (400)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 999999999999999999999999998888776 8999999999999999999999999999999999999874
Q ss_pred cccccccccccCCChhhHHHHHHHHHHHH-HHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCCCccccccc
Q 011424 202 NLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLK 280 (486)
Q Consensus 202 ~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (486)
+|| +..+.+.++..++.. +..+..||.++. +. .+ +.....++.++
T Consensus 161 --~g~---------~~~f~~~~~~~~~~~i~~~~~~~~~~~~---~~--~~------------------~~~~~~~~~~~ 206 (400)
T PRK11646 161 --YDF---------RLVCATGAVLFVLAAAFNAWLLPAYKLS---TV--RT------------------PVREGMTRVLR 206 (400)
T ss_pred --hhH---------HHHHHHHHHHHHHHHHHHHHhCCccccc---cc--ch------------------hhHHHHHHHHc
Confidence 344 444455555444433 333445543211 00 00 01113456778
Q ss_pred chhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 011424 281 NWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIA 360 (486)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (486)
+|+++...+..+...........+.|.|..+ .+.++.+.+.+....+++.........++.+||.+.++....+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~------~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 280 (400)
T PRK11646 207 DKRFVTYVLTLTGYYMLAVQVMLMLPIMVND------IAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAG 280 (400)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhhhhhHHh------hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 8887665554443333222233345555443 2346778888888877777766666788888877666655555
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHH
Q 011424 361 GVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGG 440 (486)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g 440 (486)
..+..+....+..... .+ ...+...+.+.+.....|...++..+.+|+++||+++|+.+....+|..+||.+.|
T Consensus 281 ~~~~~~~~~~l~~~~~-----~~-~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G 354 (400)
T PRK11646 281 LLIMSLSMFPIGMVSN-----LQ-QLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGG 354 (400)
T ss_pred HHHHHHHHHHHHHhhh-----HH-HHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchH
Confidence 5555544444433221 11 12222223333444556777888889999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhh
Q 011424 441 ALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTF 477 (486)
Q Consensus 441 ~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~ 477 (486)
.+.|...... +....+...+++.+++.+...
T Consensus 355 ~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 385 (400)
T PRK11646 355 WLFDLGKALN------QPELPWMMLGIIGLITLLALY 385 (400)
T ss_pred HHHHHHhhcC------CcchHHHHHHHHHHHHHHHHH
Confidence 9999863221 244566666666666655544
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-31 Score=255.30 Aligned_cols=353 Identities=14% Similarity=0.116 Sum_probs=251.3
Q ss_pred HHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHH
Q 011424 45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI 124 (486)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~ 124 (486)
.+.+..+...++...+.|.+|.+.++++.+..+ .++..+++.+++.++++++|+++||+|||++++.+.+++++
T Consensus 20 ~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~------~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~ 93 (413)
T PRK15403 20 ALILYDFAAYLTTDLIQPGIINVVRDFNADVSL------APASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTL 93 (413)
T ss_pred HHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHH
Confidence 345556667778899999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccCCcc
Q 011424 125 FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL 203 (486)
Q Consensus 125 ~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~~~ 203 (486)
+.+++++++|++.++++|+++|++.+...+. .+++.|++|+++|++++++......+|..+||.+++.+.+ .
T Consensus 94 ~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~-------~ 166 (413)
T PRK15403 94 ACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMH-------F 166 (413)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------h
Confidence 9999999999999999999999988765555 7889999999999999999999999999999999999987 3
Q ss_pred cccccccccCCChhhHHHHHHHHHHHHH-HHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCCCcccccccch
Q 011424 204 FSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNW 282 (486)
Q Consensus 204 ~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (486)
+| ||..+++.++..++..+ ..+.+||+++.++++.+ .++..+..+++++||
T Consensus 167 ~g---------w~~~f~~~~~~~~i~~~~~~~~lp~~~~~~~~~~~-------------------~~~~~~~~~~ll~~~ 218 (413)
T PRK15403 167 VH---------WKVLFAIIAVMGLIAFVGLLLAMPETVKRGAVPFS-------------------AKSVLRDFRNVFRNR 218 (413)
T ss_pred cC---------HHHHHHHHHHHHHHHHHHHHHhCCCCccccCCCCC-------------------hHHHHHHHHHHHcCH
Confidence 44 44445666666555543 34567886542111100 000112456788999
Q ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 011424 283 PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGV 362 (486)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (486)
.++...+...+.......+....|.++.+. +|+++.+.++.......+.+++..+..++.+|+.++|. ......
T Consensus 219 ~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~-----~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~-~~~~~~ 292 (413)
T PRK15403 219 LFLTGAATLSLSYIPMMSWVAVSPVILIDA-----GGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRF-IWRAVP 292 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhChHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhH-HHHHHH
Confidence 999877777666665556655666666544 68999999999888888888877766666666544443 222222
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHH
Q 011424 363 LTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGAL 442 (486)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l 442 (486)
+..++..++........ ..+....+...+.+.+.....+......-. -....+|++.++.+.....+..+++...+++
T Consensus 293 ~~~ig~~l~~~~~~~~~-~~~~~~~~~~~l~~~G~~~~~p~~~~~al~-~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~ 370 (413)
T PRK15403 293 IQLVGLALLIVGNLLWP-HVWLWSVLGTSLYAFGIGLIFPTLFRFTLF-SNNLPKGTVSASLNMVILMVMAVSVEIGRWL 370 (413)
T ss_pred HHHHHHHHHHHHHHHcc-ccHHHHHHHHHHHHHHHHHHhHHHHHHHhc-cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222211110011 112112223333333444444444432221 2233579999999999999999999999988
Q ss_pred HHHH
Q 011424 443 FSWA 446 (486)
Q Consensus 443 ~~~~ 446 (486)
.+..
T Consensus 371 ~~~~ 374 (413)
T PRK15403 371 WFNG 374 (413)
T ss_pred HHcC
Confidence 7663
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-32 Score=261.35 Aligned_cols=394 Identities=14% Similarity=0.048 Sum_probs=264.3
Q ss_pred CChhHHHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhH
Q 011424 38 LPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM 117 (486)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~ 117 (486)
++|..+...++...........+...+|.+.+++|.+.++ .+++.+.+.++..++.++.|+++||+|||++++.
T Consensus 16 ~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~------~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~ 89 (455)
T TIGR00892 16 WGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSE------TAWISSIMLAVLYAGGPISSILVNRFGCRPVVIA 89 (455)
T ss_pred cchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhH------HHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHh
Confidence 3454455555555444445566777889999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccchHHHHHH-HHHHHHhhccchhh-HHHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcc
Q 011424 118 GTASVVIFNTLFGLSVNFWMAVL-TRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (486)
Q Consensus 118 ~~~~~~~~~~~~~~a~~~~~l~~-~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~ 195 (486)
+.++.+++.++++++++++.+++ .|+++|++.+...+ ..+++.++++ ++|+++.++.+.+..+|..++|++++.+.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~ 168 (455)
T TIGR00892 90 GGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFE 168 (455)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999999998875 56999999887544 4788889986 789999999999999999999999999988
Q ss_pred cCccCCcccccccccccCCChhhHHHHHHHHHHHHHHHHhc-CCcccCCCCCCCcccchhhhccccc-cchhhhcccCCC
Q 011424 196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL-PETLHRHNDDDDSCDVSYDALESAS-AEVKEEEGREAT 273 (486)
Q Consensus 196 ~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 273 (486)
.+|| |..+.+.+++.++..+..+++ ++.+.++..+.++.+.......... ......++..+.
T Consensus 169 -------~~gw---------r~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (455)
T TIGR00892 169 -------SFGW---------RGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRF 232 (455)
T ss_pred -------HhCh---------HHHHHHHHHHHHHHHHHHHHhCCCCcccccccccccccCCCCCccccccccchhhhhhhh
Confidence 4454 444466665555443333333 3222111000000000000000000 000000000111
Q ss_pred cccccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHh-hh
Q 011424 274 PKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI-LG 352 (486)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 352 (486)
...+++++|+++......++..........+++.|..+ .|++..+++...++.+++.+++++..+.+.+++ .+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~ 306 (455)
T TIGR00892 233 LDFSLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKD------KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIR 306 (455)
T ss_pred cchHHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence 11257788888877777666666555555666666542 588999999999999999999888444444432 33
Q ss_pred hHHHHHHHHHHH--HHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHH
Q 011424 353 PIMVARIAGVLT--IPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSL 430 (486)
Q Consensus 353 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 430 (486)
+++......... .+..+..... . ..+ .+.+..++.++......+...+...+.+|+++++++.|+.+...++
T Consensus 307 ~~~~~~~~~~~~~~~l~~ll~~~~---~--~~~-~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l 380 (455)
T TIGR00892 307 PHVQYLFSFALLFNGLTHLLCALA---G--DYT-GLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECC 380 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---c--hHH-HHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHH
Confidence 333333222222 1222222111 1 112 2333344445555566677788888889999999999999999999
Q ss_pred HHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHH
Q 011424 431 FKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLM 475 (486)
Q Consensus 431 g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~ 475 (486)
|++++|.+.|.+.+.. ++|...|++.+++.+++.+.
T Consensus 381 g~~igp~i~G~l~~~~---------g~~~~~f~~~~~~~li~~~~ 416 (455)
T TIGR00892 381 AVLIGPPLAGRLVDAT---------KNYKYIFYASGSIVVSAGLF 416 (455)
T ss_pred HHHccccceeeeehhc---------CCcchHHHHhhHHHHHHHHH
Confidence 9999999999999876 24777888877776666553
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-32 Score=256.77 Aligned_cols=346 Identities=25% Similarity=0.376 Sum_probs=257.8
Q ss_pred HHHHHHhhhhhhhhcccHH-HHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHH
Q 011424 47 WIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF 125 (486)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~ 125 (486)
+++.++..++.....+.+| .+.+++|.+..+ .+++.+++.++..+++++.|+++||+|||+++.++.++.+++
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~ 75 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQ------IGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALG 75 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHC------HHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhH
Confidence 5667788888899999999 899999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccCCccc
Q 011424 126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLF 204 (486)
Q Consensus 126 ~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~~~~ 204 (486)
.++..+++|++.+++.|++.|++.+...+. .+++.|++|+++|++++++.+...++|.+++|.+++.+.+ .+
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~-------~~ 148 (352)
T PF07690_consen 76 SLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLIS-------YF 148 (352)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------HC
T ss_pred HHHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhh-------cc
Confidence 777777788889999999999999888886 9999999999999999999999999999999999999997 45
Q ss_pred ccccccccCCChhhHHHHHHHHHHHHHH-HHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCCC-cccccccch
Q 011424 205 SSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREAT-PKKSLLKNW 282 (486)
Q Consensus 205 gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 282 (486)
+||+.+ .+.++..++..++ ..++++++++++.++++++. ++++++.. ..+.+++++
T Consensus 149 ~~~~~~---------~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~ 206 (352)
T PF07690_consen 149 GWRWAF---------LISAILSLIAAILFILFLPEPPPPRERESPKESE-------------SKKPKPLKPGFKSLFKNP 206 (352)
T ss_dssp HHCCHH---------HHHHHHHHHHHHHHHCCC---STTTT--SSTTTT---------------HHHCCCH-CTHHHHHH
T ss_pred cccccc---------ccccchhhhhhhhHhhhhhhcccccccccccccc-------------cccccccccccccccccc
Confidence 555444 6666666655443 34555555443332221110 00111122 366677777
Q ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 011424 283 PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYS-TQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG 361 (486)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (486)
.+|......++..........+.|.|+.+. +|++ ..+.+.......+.++++++ ..+++.||.++++......
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~ 280 (352)
T PF07690_consen 207 VLWILLIAFFLFFFVFSGFSFFLPLYLQEV-----LGFSGPSQAGLLFSIFGIVGIIGSL-LAGRLSDRFGRRRRLLIAI 280 (352)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHCCHH-----HHCCTHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTTCHHHHHHHH
T ss_pred hhhhhhhhhhHHHHHHHHhhcccchhhhhc-----cCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCcHHHHHHHH
Confidence 776455555555555556667777765544 6888 78899999999999999988 4455556667766666665
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHh
Q 011424 362 VLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGP 436 (486)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~ 436 (486)
....+....+....... .........++.+++.....+....+..+.+|++++|++.|+.+...++++.++|
T Consensus 281 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 281 LLLILGALGLLLLPFSS---SPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHCCSHHHC---HHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 55555555544433221 1122333444455566667888999999999999999999999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-31 Score=252.34 Aligned_cols=378 Identities=15% Similarity=0.164 Sum_probs=272.3
Q ss_pred hHHHHHHHHHHHhhhhhhhhcccHHH-HHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHH
Q 011424 41 TELFSIWIIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT 119 (486)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~ 119 (486)
+.++.+.+..++...+.+...|.+|. +.+++|.+..+ .|++.+.+.++..+++++.|+++||+|||++++++.
T Consensus 7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~------~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~ 80 (395)
T PRK10054 7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDL------IGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAI 80 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHH
Confidence 33666667788888888888888875 55789999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCc
Q 011424 120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE 198 (486)
Q Consensus 120 ~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~ 198 (486)
++..++.++.+++++++.++++|.+.|.+.+...++ .++..|..|+++|++++++.+...++|..++|++++++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~--- 157 (395)
T PRK10054 81 TAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM--- 157 (395)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 999999999999999999999999988877777775 8999999999999999999999999999999999998864
Q ss_pred cCCcccccccccccCCChhhHHHHHHHHHHHH-HHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCCCcccc
Q 011424 199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKS 277 (486)
Q Consensus 199 ~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (486)
.||+.. +...++..++.+ +..+++||+++++++++ + +..+.++
T Consensus 158 -----~g~~~~---------f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~---~-------------------~~~~~~~ 201 (395)
T PRK10054 158 -----QSINLP---------FWLAAICSAFPLVFIQIWVQRSEKAIATET---G-------------------SVWSPSV 201 (395)
T ss_pred -----hccCcH---------HHHHHHHHHHHHHHHHHHHhccccccccch---h-------------------hhhhhhh
Confidence 344443 355555544443 33344565543211100 0 0011256
Q ss_pred cccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 011424 278 LLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVA 357 (486)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (486)
.+|||+++...+..++.......+..+.+.|.... .+.+.+....+.......+..+..+...+++.+| .++|+.+
T Consensus 202 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~l 277 (395)
T PRK10054 202 LLQDKALLWFTCSGFLASFVSGAFASCISQYVMVV---ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNA-ANIRPLM 277 (395)
T ss_pred hccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHh---cccchHHHHHHHHHHhhhhheeeehhHHHHHHcc-CCchhHH
Confidence 78888887777666665555444444555554322 2346667777888777777666666645555554 4777777
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhh
Q 011424 358 RIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPA 437 (486)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~ 437 (486)
..+..+..+....+..... ..+ ...+.....+.+.....|.....+.+..|++.++++.+..+ ...+|.++||.
T Consensus 278 ~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~ 351 (395)
T PRK10054 278 TAGTLCFVIGLVGFIFSGN----SLL-LWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPL 351 (395)
T ss_pred HHHHHHHHHHHHHHHHcch----HHH-HHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHH
Confidence 7776555555544433211 111 12223334444555556777788888899999999998765 67799999999
Q ss_pred hHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhccccccC
Q 011424 438 GGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQR 484 (486)
Q Consensus 438 ~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 484 (486)
+.|.++|.. |+...|++.+.+..+..++... ..+|+
T Consensus 352 ~~G~l~~~~----------g~~~~~~~~~~~~~~~~~~~~~-~~~~~ 387 (395)
T PRK10054 352 VSGVILTTL----------PPWSLFVILALAIVAAWLLMLK-GMRAR 387 (395)
T ss_pred HHHHHHHHc----------ChhhHHHHHHHHHHHHHHHHHh-ccccC
Confidence 999999988 7888888877777776666655 44443
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-30 Score=248.37 Aligned_cols=349 Identities=17% Similarity=0.141 Sum_probs=251.6
Q ss_pred HHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHH
Q 011424 43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV 122 (486)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~ 122 (486)
+..+.....+..+....+.|.+|.+.+++|.++++ .+++.+++.++..++++++|+++||+|||+++..+.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~------~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 81 (401)
T PRK11043 8 LVYLAGLSMLGFLATDMYLPAFKAIQADLQTSASA------VSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLF 81 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHH------HHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHH
Confidence 33444455666777888899999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccCC
Q 011424 123 VIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYP 201 (486)
Q Consensus 123 ~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~ 201 (486)
.++.++++++++++.+++.|+++|++.+...+. .+++.|++|++++++..+.......+|..++|.+++++.+
T Consensus 82 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~------ 155 (401)
T PRK11043 82 ALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLN------ 155 (401)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------
Confidence 999999999999999999999999988776665 8899999999999999999998999999999999999988
Q ss_pred cccccccccccCCChhhHHHHHHHHHHHHHHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCCCcccccccc
Q 011424 202 NLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKN 281 (486)
Q Consensus 202 ~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (486)
.+| |+..+....+..++..+..++++|++++++++ ++..+.++++++
T Consensus 156 -~~g---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~ 202 (401)
T PRK11043 156 -HFG---------WQAIFATLFAITLLLILPTLRLKPSKKARKQS-----------------------QDALTFKQLLKS 202 (401)
T ss_pred -cCC---------hHHHHHHHHHHHHHHHHHHHHcCCCCCccccc-----------------------hHHHHHHHHHcC
Confidence 344 44444666655555555555555543221100 011234567778
Q ss_pred hhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 011424 282 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG 361 (486)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (486)
|+++...+...+.......+..+.|.+.. +.|+++.+.++......++.++++. ..+++.||+++++......
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~------~~g~s~~~~g~~~~~~~~~~~~g~~-~~~~l~~r~~~~~~~~~~~ 275 (401)
T PRK11043 203 KTYLGNVLIFAACSAAFFAWLTGSPFILE------QMGYSPADIGLSYVPQTIAFLVGGY-GCRAALQKWGGEQLLPWLL 275 (401)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHH------HcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCHHHHHHHHH
Confidence 87766555444444444444455555543 2588899999888877788888877 5556666678777665554
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHH
Q 011424 362 VLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGA 441 (486)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~ 441 (486)
....++...+...........+ ...+...+.+.......+.......+..| +.+|++.|+.++....++..++.+.|.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~ 353 (401)
T PRK11043 276 VLFAVSVIAIWLASLLSHPSLV-PLLIPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSA 353 (401)
T ss_pred HHHHHHHHHHHHHHHhccCcHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444433332222211111112 22222333444555566666666666555 689999999999999999999999998
Q ss_pred HHHH
Q 011424 442 LFSW 445 (486)
Q Consensus 442 l~~~ 445 (486)
+.+.
T Consensus 354 l~~~ 357 (401)
T PRK11043 354 LIST 357 (401)
T ss_pred ccCC
Confidence 8763
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-30 Score=243.34 Aligned_cols=367 Identities=14% Similarity=0.115 Sum_probs=268.6
Q ss_pred HHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHH-HHH
Q 011424 44 FSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT-ASV 122 (486)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~-~~~ 122 (486)
..+.+..+...+......|.+|.+.+|+|.+..+ +|++.+++.+...++++++|+++||+|||+...... ...
T Consensus 7 ~~l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~------ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~ 80 (382)
T TIGR00902 7 RWLALGFFGYFCAYGIFLPFFPAWLKGIGLGEEM------IGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALAS 80 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 4466677778888899999999999999999999 999999999999999999999999999854332211 111
Q ss_pred HHHH-HHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccC
Q 011424 123 VIFN-TLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY 200 (486)
Q Consensus 123 ~~~~-~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~ 200 (486)
.+.. ..+..+++++.+++.|+++|.+.+...|. .++..|+ +++|++.+|......++|.+++|++++.+.+
T Consensus 81 ~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~----- 153 (382)
T TIGR00902 81 AIFAAAFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIG----- 153 (382)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 1222 24456789999999999999987777775 6666554 5789999999999999999999999999998
Q ss_pred CcccccccccccCCChhhHHHHHHHHHHHHHHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCCCccccccc
Q 011424 201 PNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLK 280 (486)
Q Consensus 201 ~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (486)
.+|||..+ .+..+..++.+ ....++|++++++++++ + +.+..+..++++|
T Consensus 154 --~~g~~~~f---------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~----------------~~~~~~~~~~~l~ 203 (382)
T TIGR00902 154 --MFDEQNIL---------AILTAGLAFML-IGFLIKPTIPPKDAIPE--D----------------ESQGDSAFIALLK 203 (382)
T ss_pred --HcChhHHH---------HHHHHHHHHHH-HHHHcCCCCCCCccccc--c----------------ccccchhHHHHHc
Confidence 55555443 44433322222 23333443221111100 0 0011224567889
Q ss_pred chhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 011424 281 NWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIA 360 (486)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (486)
+|+++...+..++.......+..+.+.|..+ .|.++.+.|.......+..++... ..+++.||+++|+.+..+
T Consensus 204 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~------~g~s~~~~g~l~~~~~~~~i~~~~-~~~~l~~r~g~~~~l~~~ 276 (382)
T TIGR00902 204 NPMNLRFLAAVCLIQGAHAAYYGFSAIYWQA------AGISASATGLLWGIGVLAEIIIFA-FSNKLFQNCSARDLLLIS 276 (382)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------CCCCHhHHHHHHHHHHHHHHHHHH-HhHHHHhhCCHHHHHHHH
Confidence 9999988888888777777787888877753 589999999999988888888876 666677778999998888
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHH-HHHHHHHHHhhhH
Q 011424 361 GVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMT-GMSLFKAAGPAGG 439 (486)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~-~~~~g~~~~~~~~ 439 (486)
.....+....+.+... ...+....++.+.......+....++++. |+++++++++++++ ...+|..++|.+.
T Consensus 277 ~~~~~~~~~~~~~~~~------~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~ 349 (382)
T TIGR00902 277 AIACVGRWAIIGAIEA------FPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFA 349 (382)
T ss_pred HHHHHHHHHHHHhHhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887777766654322 12334445666666667777778888887 98999999999874 5679999999999
Q ss_pred HHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhc
Q 011424 440 GALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK 478 (486)
Q Consensus 440 g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~ 478 (486)
|.++|.. |+ ..|...+++.+++.++...
T Consensus 350 G~l~~~~----------g~-~~~~~~~~~~~~~~~~~~~ 377 (382)
T TIGR00902 350 GFIYPTL----------GA-GTFVFMAIIAAAAFFLIPK 377 (382)
T ss_pred HHHHHhc----------cH-HHHHHHHHHHHHHHHHHHh
Confidence 9999988 54 5677778877777655443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-31 Score=253.99 Aligned_cols=368 Identities=18% Similarity=0.213 Sum_probs=253.1
Q ss_pred hhHHHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHH
Q 011424 40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT 119 (486)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~ 119 (486)
++.+....+..+...++.....+..|.+.+++|.++.+ .+++.+.+.++..++.++.|+++||+|||+++..+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~ 89 (398)
T TIGR00895 16 WRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQ------LGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSI 89 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHH------HHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHH
Confidence 34445556667777777888888999999999999988 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCc
Q 011424 120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE 198 (486)
Q Consensus 120 ~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~ 198 (486)
++..++.++..++++++.+++.|++.|++.+...+. .+++.|++|+++|++++++...+..+|..+++.+++.+.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~--- 166 (398)
T TIGR00895 90 LLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIP--- 166 (398)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhh---
Confidence 999999999999999999999999999998887776 9999999999999999999999999999999999999988
Q ss_pred cCCcccccccccccCCChhhHHHHH-HHHHHHHHHHHhcCCcccCCCCCCCcc-cchhhhcccccc-----chhh--hcc
Q 011424 199 KYPNLFSSESLFGKFPYFLPCLCIS-LFAFGVTIAAFWLPETLHRHNDDDDSC-DVSYDALESASA-----EVKE--EEG 269 (486)
Q Consensus 199 ~~~~~~gw~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~--~~~ 269 (486)
..||+..+ .+.+ +..+..++...++||+++...+++++. +...++...... +.++ .++
T Consensus 167 ----~~g~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (398)
T TIGR00895 167 ----VFGWRSLF---------YVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQ 233 (398)
T ss_pred ----cccceeeh---------hhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhcccccccccccccccc
Confidence 55665554 4443 333334455567788765322221111 000000000000 0000 000
Q ss_pred cCCCc-ccccccch---hhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHH
Q 011424 270 REATP-KKSLLKNW---PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYP 345 (486)
Q Consensus 270 ~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (486)
+..+. .+.+++++ ..+...+..++..........+.|.+. ++.|++..+.+.......++.+++.+ ..+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~ 306 (398)
T TIGR00895 234 GTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLM------VELGFSLSLAATGGALFNFGGVIGSI-IFG 306 (398)
T ss_pred chhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHcCCCHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 00111 11222222 222233333333333333444444332 22688889999999999999999988 566
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHH
Q 011424 346 FLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAM 425 (486)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 425 (486)
++.||.++++........ .+....+.... . ..+ ......++.+++.....+...++..+.+|++.|+++.|+.+
T Consensus 307 ~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~--~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 380 (398)
T TIGR00895 307 WLADRLGPRVTALLLLLG-AVFAVLVGSTL--F--SPT-LLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAI 380 (398)
T ss_pred HHHhhcchHHHHHHHHHH-HHHHHHHHHHh--h--CHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 667777877444333322 22222222211 1 111 22333444555666677888899999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHH
Q 011424 426 TGMSLFKAAGPAGGGAL 442 (486)
Q Consensus 426 ~~~~~g~~~~~~~~g~l 442 (486)
....+|.+++|.+.|.+
T Consensus 381 ~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 381 GIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHhHHhc
Confidence 99999999999999875
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=238.86 Aligned_cols=386 Identities=14% Similarity=0.108 Sum_probs=303.8
Q ss_pred CCCChhHHHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhh
Q 011424 36 SGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVI 115 (486)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l 115 (486)
++..++.++.-.+...+..+...+..++.+.+.+|+|+|++| .+++.++..+...+..++.|.+.||+|.|++.
T Consensus 9 k~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q------~~ll~aiPil~GallRl~~g~l~drfGgR~~~ 82 (417)
T COG2223 9 KRIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQ------KGLLVAIPILVGALLRLPYGFLTDRFGGRKWT 82 (417)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHH------HHHHHHHHHHHhHHHHHHHHhhhcccCchHHH
Confidence 444567788888888888888999999999999999999999 99999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhccc---hHHHHHHHHHHHHhhccchhhHHHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhh
Q 011424 116 IMGTASVVIFNTLFGLSV---NFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGF 192 (486)
Q Consensus 116 ~~~~~~~~~~~~~~~~a~---~~~~l~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~ 192 (486)
.+++++..+-.+..+++. +++++++++++.|++.+.+....+++++++|+|++|.++|+.. ..|+|..+...++..
T Consensus 83 ~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~ 161 (417)
T COG2223 83 ILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPL 161 (417)
T ss_pred HHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHH
Confidence 999999999999998875 4559999999999998888888999999999999999999999 999999999999888
Q ss_pred hcccCccCCcccccccccccCCChhhHHHHHHHHHH-HHHHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccC
Q 011424 193 LAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGRE 271 (486)
Q Consensus 193 l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (486)
+.. .+|+. .|+....+-.+..++ .+..++...|.|+.+...++. .
T Consensus 162 v~~-------~~g~~------~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~---------------------~ 207 (417)
T COG2223 162 VAV-------AFGFL------AWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQ---------------------L 207 (417)
T ss_pred HHH-------HHhhH------HHHHHHHHHHHHHHHHHHHHHHHhCCChhhhcccccc---------------------c
Confidence 887 45510 133333343333333 445555666655432221110 0
Q ss_pred CCcccccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011424 272 ATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL 351 (486)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (486)
+...+.+++|++.|.+.+.++..+....++..++|.|+.+. ++.++.++|.......+.+.+.+. .+++++||+
T Consensus 208 ~~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~-----fg~~~~~Ag~~a~~f~~~g~l~Rp-~GG~LsDR~ 281 (417)
T COG2223 208 PAQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQ-----FGLSPVTAGLIAFLFPLIGALARP-LGGWLSDRI 281 (417)
T ss_pred hhHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCChhhHHHHHHHHHHHHHHHHh-ccchhhhhc
Confidence 03456788999999999999999999999999999998877 899999999999999999999999 889999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHH
Q 011424 352 GPIMVARIAGVLTIPLLTSYPYIAMLSG-FGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSL 430 (486)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 430 (486)
|.+|........+.++..+......... ...........+..+.+...-....+-++...+| ++.|.+.|+...++.+
T Consensus 282 Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~-~~~G~v~G~vga~G~l 360 (417)
T COG2223 282 GGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFP-KETGAVTGIVGAIGGL 360 (417)
T ss_pred cchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHH-hhhhHHHHHHHHhccc
Confidence 9988888888777777666655432211 0111222222333333444444455566666566 5889999999999999
Q ss_pred HHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhc
Q 011424 431 FKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK 478 (486)
Q Consensus 431 g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~ 478 (486)
|+..-|...|...+.++ .+...|+++..+.+++.+..+.
T Consensus 361 GGf~lp~~~g~~~~~tg---------~~~~~f~~~~~~~~~a~v~~~~ 399 (417)
T COG2223 361 GGFFLPLAFGVSLDLTG---------SYTGAFMLLLAFYLVALVLTWA 399 (417)
T ss_pred cccchhHHHHHHHHhcc---------cHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999882 3888999999988888887765
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-30 Score=243.94 Aligned_cols=346 Identities=24% Similarity=0.366 Sum_probs=284.4
Q ss_pred HHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHH
Q 011424 45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI 124 (486)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~ 124 (486)
.+....+...++.....+..|.+.+++|.++.+ .+++.+...++..+++++.|+++||+|||+.+.++.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~ 76 (352)
T cd06174 3 LLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQ------AGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFAL 76 (352)
T ss_pred HHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHH
Confidence 345567778888899999999999999999988 99999999999999999999999999999999999999999
Q ss_pred HHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccCCcc
Q 011424 125 FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL 203 (486)
Q Consensus 125 ~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~~~ 203 (486)
+.+...++++++.+++.|++.|++.+...+. .+++.|++|+|+|++.+++.+....+|..++|.+++.+.+ .
T Consensus 77 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-------~ 149 (352)
T cd06174 77 GSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE-------S 149 (352)
T ss_pred HHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHH-------H
Confidence 9999999999999999999999998888776 9999999999999999999999999999999999999988 3
Q ss_pred cccccccccCCChhhHHHHHHHHHHHHHHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCCCcccccccchh
Q 011424 204 FSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWP 283 (486)
Q Consensus 204 ~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (486)
.+ |+..+.+.++..++..+...+++ |.
T Consensus 150 ~~---------~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------~~ 176 (352)
T cd06174 150 LG---------WRWLFLILAILGLLLALLLLFLL--------------------------------------------RL 176 (352)
T ss_pred hh---------HHHHHHHHHHHHHHHHHHHHHHH--------------------------------------------HH
Confidence 33 44444565555555544444433 44
Q ss_pred hHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHH
Q 011424 284 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIM-VARIAGV 362 (486)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 362 (486)
++...+..++.......+..+.+.+..+. .+.+..+.+.......++..++.+ ..+++.||.++|+ .+..+..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~ 250 (352)
T cd06174 177 LLLLALAFFLLSFGYYGLLTYLPLYLQEV-----LGLSAAEAGLLLSLFGLGGILGAL-LGGLLSDRLGRRRLLLLIGLL 250 (352)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHH
Confidence 55566666666666666667777766543 478899999999999999999988 5555667778888 7777777
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHH
Q 011424 363 LTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGAL 442 (486)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l 442 (486)
+..++...+..... .....+...+.+.+.....+....+..|..|+++|++..|+.+...+++..++|.+.|.+
T Consensus 251 ~~~i~~~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l 324 (352)
T cd06174 251 LAALGLLLLALAPS------LALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLL 324 (352)
T ss_pred HHHHHHHHHHHhcc------HHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766666554332 223344455566667777888999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhc
Q 011424 443 FSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK 478 (486)
Q Consensus 443 ~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~ 478 (486)
.+.. +++..+.+.+++.+++.+..++
T Consensus 325 ~~~~----------~~~~~~~~~~~~~~i~~i~~~~ 350 (352)
T cd06174 325 LDTG----------GYGGVFLILAALALLAALLLLL 350 (352)
T ss_pred hccc----------CcchHHHHHHHHHHHHHHHhee
Confidence 9865 7889999999998888777654
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-30 Score=245.86 Aligned_cols=352 Identities=14% Similarity=0.154 Sum_probs=248.5
Q ss_pred ChhHHHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHH
Q 011424 39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG 118 (486)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~ 118 (486)
+++.+.......++..+......|.+|.+.+++|.++.+ .+++.+.+.++..++++++|+++||+|||+++.++
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~ 79 (394)
T PRK11652 6 NVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGA------VQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVG 79 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHH
Confidence 455666666677777788888999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccC
Q 011424 119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA 197 (486)
Q Consensus 119 ~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~ 197 (486)
.++..++.+++.++++++.+++.|++.|++.+...+. ..+..|.+++++|+++.+..+.+..++..++|.+++.+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~-- 157 (394)
T PRK11652 80 MSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTT-- 157 (394)
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 9999999999999999999999999999998877775 7888999999999999999999999999999999999987
Q ss_pred ccCCcccccccccccCCChhhHHHHHHHHHHH-HHHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCCCccc
Q 011424 198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKK 276 (486)
Q Consensus 198 ~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (486)
..| ||..+.+.++..++. ++..++.||+++.++++++ .....+
T Consensus 158 -----~~g---------~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~ 201 (394)
T PRK11652 158 -----LFG---------WRACYLFLLLLGAGVTFSMARWMPETRPADARRTR----------------------VLASYR 201 (394)
T ss_pred -----ccC---------hHHHHHHHHHHHHHHHHHHHHhCCccCccccchhH----------------------HHHHHH
Confidence 344 444445655544433 3344567776433211100 012345
Q ss_pred ccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 011424 277 SLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMV 356 (486)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (486)
+.+++|+++...+..+........+....+.+..+. +|+++.+.++......++.++++. ..+++.||.+++..
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~g~~-~~~~l~~~~~~~~~ 275 (394)
T PRK11652 202 TLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAV-----LGLSSMTVSILFILPIPAAFFGAW-FAGRPNKRFSTLMW 275 (394)
T ss_pred HHHcChHHHHHHHHHHHHHHHHHHHHHhChHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 567788777655544443333333333334444332 688888899988887788888877 55566666553322
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHh
Q 011424 357 ARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGP 436 (486)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~ 436 (486)
.. ..........+...........+ .......+.+.+.....+.......+..| +++|++.++.+....+|..+++
T Consensus 276 ~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~ 351 (394)
T PRK11652 276 QS--VICCLLAGLLMWIPGWFGVMNVW-TLLVPAALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAA 351 (394)
T ss_pred HH--HHHHHHHHHHHHHHHHhccccHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHH
Confidence 22 11111111111111110011112 22233334444555567777777778776 6789999999999999999999
Q ss_pred hhHHHHHH
Q 011424 437 AGGGALFS 444 (486)
Q Consensus 437 ~~~g~l~~ 444 (486)
.+.+.+.+
T Consensus 352 ~~~~~~~~ 359 (394)
T PRK11652 352 LLSAMLPQ 359 (394)
T ss_pred HHHHHccC
Confidence 98887654
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-29 Score=247.34 Aligned_cols=380 Identities=13% Similarity=0.133 Sum_probs=267.2
Q ss_pred hhHHHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhc-----CCchh
Q 011424 40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-----GRKPV 114 (486)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~-----Grr~~ 114 (486)
+++...+....+..++......+.+|.+.++.|.+.++ ++.+ +.....+ ++.+++|+++||+ ||||.
T Consensus 11 ~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~------ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~ 82 (491)
T PRK11010 11 QPNSAILLILGFASGLPLALTSGTLQAWMTVENIDLKT------IGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRG 82 (491)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH------HHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchH
Confidence 34566777777888888889999999999999999988 8886 3344444 6899999999999 99986
Q ss_pred -hhHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhh
Q 011424 115 -IIMGTASVVIFNTLFGLS---VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPAL 189 (486)
Q Consensus 115 -l~~~~~~~~~~~~~~~~a---~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l 189 (486)
+..+.+..+++...+++. ++++.+.+.|++.|++.+...+. .+++.|++|+|+|+++.++...+..+|.++++.+
T Consensus 83 ~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l 162 (491)
T PRK11010 83 WLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGL 162 (491)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 557777777777777664 47889999999999988877775 9999999999999999999999999999999999
Q ss_pred hhhhcccCccCCcccccccccccCCChhhHHHHHHHHHHHHHHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcc
Q 011424 190 GGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEG 269 (486)
Q Consensus 190 ~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (486)
+.++.+ . .++||..+.+.++..++..+..+++||+++..+. ++ + . ++
T Consensus 163 ~~~l~~-------~--------~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~~~-~~--~-~--------------~~ 209 (491)
T PRK11010 163 ALWLAD-------R--------YLGWQGMYWLMAALLIPCIIATLLAPEPTDTIPV-PK--T-L--------------EQ 209 (491)
T ss_pred HHHHHh-------c--------ccCHHHHHHHHHHHHHHHHHHHHhcCCCcccccc-cc--c-h--------------hh
Confidence 999886 1 1355666677776666665555567776432110 00 0 0 00
Q ss_pred cCCCcccccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHH-HHHHHHHHHHHHHHHHHH
Q 011424 270 REATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLA-ITGFSLLVFQLSLYPFLE 348 (486)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 348 (486)
+...+.+++++++..+...+..++..........+.+.|+.+. .|++..+.+.... ...++.+++.+ .++++.
T Consensus 210 ~~~~~l~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~-----~G~s~~~~g~~~~~~g~i~~iiG~l-l~G~L~ 283 (491)
T PRK11010 210 AVVAPLRDFFGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRG-----VGFDAGEVGLVNKTLGLLATIVGAL-YGGILM 283 (491)
T ss_pred hHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 0012345566777766655555555444444445555554332 6899999999875 44567778877 777777
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHH
Q 011424 349 RILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGM 428 (486)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 428 (486)
||+++++.+..+..+..+....+...... ....+. +....++.....+...+...+...+..+++.+++..|+.+...
T Consensus 284 dr~g~~~~l~i~~~l~~l~~l~~~~l~~~-~~~~~~-l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~ 361 (491)
T PRK11010 284 QRLSLFRALMIFGILQGVSNAGYWLLSIT-DKNLYS-MGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALS 361 (491)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhc-cccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 77888777665554434333322221111 111111 1112222222223334555677788889999999999999999
Q ss_pred HHHHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhc
Q 011424 429 SLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK 478 (486)
Q Consensus 429 ~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~ 478 (486)
.+|..+++.+.|.+.|.. ||...|.+.+++.+++.+....
T Consensus 362 ~lg~~~~~~~~G~l~~~~----------G~~~~f~~~~~~~l~~l~~~~~ 401 (491)
T PRK11010 362 AVGRVYVGPVAGWFVEAH----------GWPTFYLFSVAAAVPGLLLLLV 401 (491)
T ss_pred HHHHHHHHHHHHHHHHHh----------ChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987 8999999988888888777655
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-30 Score=244.12 Aligned_cols=335 Identities=19% Similarity=0.224 Sum_probs=233.4
Q ss_pred hhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHhccch
Q 011424 55 LPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVN 134 (486)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~ 134 (486)
++..++.|.+|.+.+++|.++.+ .+++.+++.++..++++++|+++||+|||+++..+.++.+++.+++.++++
T Consensus 5 ~~~~~~~p~~~~~~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~ 78 (377)
T PRK11102 5 LAIDMYLPALPVIAADFGVSAGS------VQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQT 78 (377)
T ss_pred hHHHHHhccHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHcc
Confidence 45677889999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccCCcccccccccccC
Q 011424 135 FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKF 213 (486)
Q Consensus 135 ~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~~~~gw~~~~~~~ 213 (486)
++.+++.|+++|++.+...+. .+++.|++|+++|++++++.+....+|..++|.+++.+.+ .+
T Consensus 79 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~-------~~--------- 142 (377)
T PRK11102 79 IDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLV-------WF--------- 142 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------Hc---------
Confidence 999999999999998887775 8999999999999999999999999999999999999987 33
Q ss_pred CChhhHHHHHHHHHHHH-HHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCCCcccccccchhhHHHHHHHH
Q 011424 214 PYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYC 292 (486)
Q Consensus 214 ~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (486)
+|+..+.+.++..++.. ...+.+||+++++++++.+ . ++.....++.+++|+++...+..+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---------------~~~~~~~~~~~~~~~~~~~~~~~~ 204 (377)
T PRK11102 143 SWHAIFWVLALAAILAAALVFFFIPETLPKERRQPFH---L---------------RTTIRNFASLFRHKRVLGYMLASG 204 (377)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhCCccCcccccCCCC---h---------------HHHHHHHHHHHcChHHHHHHHHHH
Confidence 44554456555555443 3445667754332111100 0 000113345677887776665555
Q ss_pred HHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 011424 293 VFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYP 372 (486)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (486)
+.......+..+.+.++.+. +|+++.+.+.......++.+++++ ..+++.||.++|+....+..+..+....+.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~g~~~~~~~~~~~~~~~-~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~ 278 (377)
T PRK11102 205 FSFAGMFSFLTAGPFVYIEL-----NGVSPQNFGYYFALNIVFLFVMTI-INSRFVRRVGALNMLRFGLWIQFIMGIWLV 278 (377)
T ss_pred HHHHHHHHHHHcCHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 44433333333334443322 688999999999999999999988 556667777999888777665443332222
Q ss_pred HHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHH-HHHHHHhhh
Q 011424 373 YIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMS-LFKAAGPAG 438 (486)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~-~g~~~~~~~ 438 (486)
..... +...+...... ...........+.......|..| +.++++.++.+.... ++..+++.+
T Consensus 279 ~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~ 342 (377)
T PRK11102 279 VSALL-DLGFWALVVGV-AAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALL 342 (377)
T ss_pred HHHHH-hhhHHHHHHHH-HHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 22111 11112111111 11112222333344445566555 889999999877643 555555544
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-29 Score=240.51 Aligned_cols=343 Identities=18% Similarity=0.159 Sum_probs=239.0
Q ss_pred HHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHH
Q 011424 44 FSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVV 123 (486)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~ 123 (486)
.......+....+.....+.+|.+.+++|.++.+ .++..+.+.++..+++++.|+++||+|||+++..+.++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~ 79 (392)
T PRK10473 6 LCSFALVLLYPAGIDMYLVGLPRIAADLNASEAQ------LHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFI 79 (392)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHH
Confidence 3455566677777788889999999999999998 9999999999999999999999999999999999999999
Q ss_pred HHHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccCCc
Q 011424 124 IFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPN 202 (486)
Q Consensus 124 ~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~~ 202 (486)
++.+++..+++++.+++.|+++|++.+...+. .+++.|++|+++|+++++..+....+|..++|.+++.+.+
T Consensus 80 i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~------- 152 (392)
T PRK10473 80 IASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIML------- 152 (392)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------
Confidence 99999999999999999999999998887775 9999999999999999999999999999999999998877
Q ss_pred ccccccccccCCChhhHHHHHHHHHHH-HHHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCCCcccccccc
Q 011424 203 LFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKN 281 (486)
Q Consensus 203 ~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (486)
..| |+..+.+.++..++. ++....+||++++++++++ + ..+..++.+++
T Consensus 153 ~~g---------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~-------------------~~~~~~~~~~~ 202 (392)
T PRK10473 153 KFP---------WQSLFYTMAAMGILVLLLSLFILKETRPARAPAAS--S-------------------KPRENSESLLN 202 (392)
T ss_pred CcC---------hHHHHHHHHHHHHHHHHHHHHHcCCCCCcccCCcc--c-------------------hHHHHHHHHhC
Confidence 344 444445555554443 3344566776433211000 0 01122345677
Q ss_pred hhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 011424 282 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG 361 (486)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (486)
++++...+...+.......+..+.+.+..+ ++|+++.+.+......+++.+++.+ ..+++.||+++|+....+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~i~~~~-~~~~l~~r~g~~~~~~~~~ 276 (392)
T PRK10473 203 RFFLSRLVITTLSVTVILTFVNTSPVLLME-----QMGFSRGEYAIIMALTAGVSMTVSF-STPFALGIFKPRTLMLTSQ 276 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCHHHHHH-----HcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCHHHHHHHHH
Confidence 776654444433333323333333444332 2688888999999999999999987 5666777889999888877
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHH
Q 011424 362 VLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGA 441 (486)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~ 441 (486)
.+..++...+...... +.......+.. .+.....+. ....+..|.++|+ |.......++..+++.+.++
T Consensus 277 ~~~~~~~~~~~~~~~~-----~~~~~~~~l~~-~g~~~~~~~--~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~ 345 (392)
T PRK10473 277 VLFLAAGITLALSPSH-----AVSLFGITLIC-AGFSVGFGV--AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIW 345 (392)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHH-HHHHHHhHH--HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHH
Confidence 7666655554443221 11111111111 111111111 2223344544443 44455566777888888888
Q ss_pred HHHHH
Q 011424 442 LFSWA 446 (486)
Q Consensus 442 l~~~~ 446 (486)
+.+..
T Consensus 346 l~~~~ 350 (392)
T PRK10473 346 LAAVL 350 (392)
T ss_pred HHHHh
Confidence 88877
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-30 Score=247.71 Aligned_cols=368 Identities=15% Similarity=0.112 Sum_probs=250.5
Q ss_pred HHhhhhhhhhcccHHHHHHHhcc--cccchhhhhHhHHHHH-----HHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHH
Q 011424 51 LCTALPISSLFPFLYFMIKDFQI--AKREEDIGSYAGYVGS-----SFMFGRALTSVFWGLVADRYGRKPVIIMGTASVV 123 (486)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~s-----~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~ 123 (486)
+.+.++...+....+.+.+++.. ++++ .+.+.+ ...++..+++++.|+++||+|||+++..+.++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~ 76 (394)
T TIGR00883 3 AVEWFDFYLYGFAAVLVFHTFFPPSGDPL------VALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMG 76 (394)
T ss_pred chhHHHHHHHHHHHHHHHHHhcCCCCChH------HHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHH
Confidence 45677888888888888877653 3333 344333 3444556789999999999999999999999999
Q ss_pred HHHHHHhccchHH--------HHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhc
Q 011424 124 IFNTLFGLSVNFW--------MAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA 194 (486)
Q Consensus 124 ~~~~~~~~a~~~~--------~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~ 194 (486)
++.++++++++++ .+++.|+++|++.+...+. .+++.|++|+++|++..+..+.+..+|.++++.++..+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~ 156 (394)
T TIGR00883 77 IGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLS 156 (394)
T ss_pred HHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999875 5889999999998887775 999999999999999999999999999999999887765
Q ss_pred ccCccCCcccccccccccCCChhhHHHHHHHHHHHHHHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCCCc
Q 011424 195 QPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATP 274 (486)
Q Consensus 195 ~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (486)
. ..+..... .++||.++.+..+..++........||++++++++++ +++....
T Consensus 157 ~-------~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~ 209 (394)
T TIGR00883 157 Y-------LLGDDALL-EWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEK-------------------HKKKRGP 209 (394)
T ss_pred H-------hcCHHHhh-ccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhc-------------------cccccCC
Confidence 3 11111111 4567777677666655555555556665533221110 0111223
Q ss_pred ccccccchh--hHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011424 275 KKSLLKNWP--LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG 352 (486)
Q Consensus 275 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (486)
.++.+++++ ++......++..........+.|.|..+. +|.+..+.+.......+...++.+ ..+++.||++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~-~~g~l~dr~g 283 (394)
T TIGR00883 210 IRETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQT-----LGLSANSALLVLMLSLILFFITIP-LSGALSDRIG 283 (394)
T ss_pred HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHhc
Confidence 445555554 55555555555555555556677666433 678888899999888899999888 5566777788
Q ss_pred hHHHHHHHHHHHHHHH-HHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHH-HHHHH
Q 011424 353 PIMVARIAGVLTIPLL-TSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAM-TGMSL 430 (486)
Q Consensus 353 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~~ 430 (486)
||+.......+..+.. ..+..... ....+ ......+..+++.....+.......|.+|++.|+++.++.. ....+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 360 (394)
T TIGR00883 284 RRPVLIIFTVLAALLAVPLLMALLD--SGSFT-LFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAI 360 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc--CCchH-HHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHH
Confidence 8887665444333322 12211111 11111 22233334444555666778889999999999999999854 44568
Q ss_pred HHHHHhhhHHHHHHHHhhhcCCCCCCc-hhHHHHHHHHHHH
Q 011424 431 FKAAGPAGGGALFSWAQKRLDASFLPG-SQMVFFVLNVVEA 470 (486)
Q Consensus 431 g~~~~~~~~g~l~~~~~~~~~~~~~~g-~~~~f~~~~~~~~ 470 (486)
|..++|.+.|.+.+.. | +...++...++.+
T Consensus 361 g~~~~p~~~g~l~~~~----------g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 361 FGGFAPYIAAALVAMT----------GDWYAIGYYLAALAL 391 (394)
T ss_pred HhhHHHHHHHHHHHHc----------CcchhHHHHHHHHHH
Confidence 8889999999999987 4 5555555444433
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=239.90 Aligned_cols=379 Identities=17% Similarity=0.107 Sum_probs=255.9
Q ss_pred cCCCChhHHHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchh
Q 011424 35 KSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPV 114 (486)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~ 114 (486)
..+.+++.+..+.+..+++.++.+.+..+.+.+.+.+|++++. .|++.+.+.+.+.+.+|++|+++|||+||++
T Consensus 27 ~~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~------~Gll~~vf~v~~~i~sPl~gyLadryNR~~v 100 (493)
T KOG1330|consen 27 SMKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSE------LGLLQTVFIVVFMIASPLFGYLADRYNRKRV 100 (493)
T ss_pred ccccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchh------ccchhHHHHHHHHHHHHHHHHHHhhcCcceE
Confidence 3445566778899999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhh
Q 011424 115 IIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL 193 (486)
Q Consensus 115 l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l 193 (486)
+.+|..++.++.+.++++..||+++++|.+.|+|.+.+.|+ +++++|.+|.++|++++++++.+..+|..+|.+.++.+
T Consensus 101 ~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~v 180 (493)
T KOG1330|consen 101 IAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVV 180 (493)
T ss_pred EeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeee
Confidence 99999999999999999999999999999999999999996 99999999999999999999999999999999999999
Q ss_pred cccCccCCcccc-cccccccCCChhhHHHHHHHHHHH-HHHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccC
Q 011424 194 AQPAEKYPNLFS-SESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGRE 271 (486)
Q Consensus 194 ~~~~~~~~~~~g-w~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (486)
.+ ..+ ||+ ++| ..+++.++. ++..++.+|+++..+++.+..... .......
T Consensus 181 a~-------~~~~Wr~-----af~----~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~-----------~~~~ts~ 233 (493)
T KOG1330|consen 181 AS-------LTFWWRW-----AFR----GSAVLGVIVGLLVFLFVREPERGARDEVDGENKM-----------VKPFTSV 233 (493)
T ss_pred cc-------CccceEE-----EEE----eehHHHHHHHHHHHhhccCcccccccccccCCcC-----------CCCccch
Confidence 87 444 444 444 444444443 455566777665432222111100 0001112
Q ss_pred CCcccccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011424 272 ATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL 351 (486)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (486)
.++.+.+.+++.+....+.+....+...++.-+.|.+.+..... .|++..+..++..+...++.+|.+ .++.+.|++
T Consensus 234 ~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~--~~~~~~~~~ifg~vt~~~G~lGvl-~Ggiisd~~ 310 (493)
T KOG1330|consen 234 WKDLKVLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYEL--IGFDHNATLIFGGVTCAGGSLGVL-FGGIISDKL 310 (493)
T ss_pred HHHHHHHHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHH--hCCccccchhhhhHHHhhchhhhe-ehHHHHHHH
Confidence 33445556666666556666555555555555666555544333 234555555555566666666665 556666652
Q ss_pred ----hhHHHHHH---HHHHHHHHHHHH-HHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhH
Q 011424 352 ----GPIMVARI---AGVLTIPLLTSY-PYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGI 423 (486)
Q Consensus 352 ----~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 423 (486)
++.....+ ...+.+...+.+ ...........+ ..+++.++.-...........-+..+.+|++.|.++.++
T Consensus 311 ~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~-~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~ 389 (493)
T KOG1330|consen 311 SRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMI-FGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYAL 389 (493)
T ss_pred HHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHH
Confidence 22112222 222222211111 111111111111 111111111112222223344466778899999999999
Q ss_pred HHHHH-HHHHHHHhhhHHHHHHHHhhhc
Q 011424 424 AMTGM-SLFKAAGPAGGGALFSWAQKRL 450 (486)
Q Consensus 424 ~~~~~-~~g~~~~~~~~g~l~~~~~~~~ 450 (486)
...+. .+|.+-+|.+.|.+.|....+.
T Consensus 390 ~~~~~h~fgd~~~p~ivGilsd~l~g~~ 417 (493)
T KOG1330|consen 390 DTVFEHIFGDAASPYIVGILSDKLRGYK 417 (493)
T ss_pred HHHHHHHhccCCCcceehhHHHHhhCCC
Confidence 98775 4555566669999999875543
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-29 Score=236.49 Aligned_cols=366 Identities=14% Similarity=0.151 Sum_probs=238.9
Q ss_pred HHHHHHHHHHhhhhhhhhcccHHH-HHHHhcccccchhhhhHhHHHHHHHHH-HHHHhhhhhhhhhhhcCCchhh-hHHH
Q 011424 43 LFSIWIIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMF-GRALTSVFWGLVADRYGRKPVI-IMGT 119 (486)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~s~~~~-~~~i~~~~~G~l~dr~Grr~~l-~~~~ 119 (486)
.....+..++..+......|.+|. +.+|+|.++++ .|++.+...+ +..++.+++|+ +||+||||.+ ..+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~------~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~ 89 (393)
T PRK15011 17 STAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAM------VGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCC 89 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHH
Confidence 445666688888888888898875 56889999999 9999876655 55555555555 9999999875 4556
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhh--hhHhhHHHHHhhhhHHHHhhhhhhhccc
Q 011424 120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQ--ALGLSTVSTAWGIGLIIGPALGGFLAQP 196 (486)
Q Consensus 120 ~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r--~~~~~~~~~~~~~g~~ig~~l~~~l~~~ 196 (486)
++.+++..+.+++++++.+++.+.+.|...+...|. .+++.|+.++++| +...++.+.+.++|.++||++++.+.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~- 168 (393)
T PRK15011 90 LLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAM- 168 (393)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHH-
Confidence 666778888889999998877666555444455665 7888888776655 345578888999999999999999998
Q ss_pred CccCCcccccccccccCCChhhHHHHHHHHHHHH-HHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCCCcc
Q 011424 197 AEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPK 275 (486)
Q Consensus 197 ~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (486)
.+| ||..+...++..++.. ...+++||.+++++.+++ + . ...
T Consensus 169 ------~~g---------w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----------------~----~~~ 211 (393)
T PRK15011 169 ------GFS---------FTVMYLSAAVAFIVCGVMVWLFLPSMRKELPLATG--T----------------L----EAP 211 (393)
T ss_pred ------hcC---------hHHHHHHHHHHHHHHHHHHHhhcCccCCCCccccc--c----------------c----ccc
Confidence 444 4555566665555443 445567876533221100 0 0 000
Q ss_pred cccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 011424 276 KSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIM 355 (486)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (486)
++ +++..+...............+..+.|.|+.+. +|+++.+.+.......+..+++.+ ..+++.||+++|+
T Consensus 212 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~~~~~~~~g~~~~~~~~~~i~~~~-~~G~l~dr~g~~~ 283 (393)
T PRK15011 212 RR--NRRDTLLLFVICTLMWGTNSLYIINMPLFIINE-----LHLPEKLAGVMMGTAAGLEIPTML-IAGYFAKRLGKRF 283 (393)
T ss_pred cc--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhChHH
Confidence 00 112222232333333333334445666666543 688888899888777777777777 5666677778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHH
Q 011424 356 VARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAG 435 (486)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~ 435 (486)
....+.....+......... ..+. ..+..++.+.......+....+..|..| +++++++++.+...++|..++
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~-----~~~~-~l~~~~l~~~~~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g 356 (393)
T PRK15011 284 LMRVAAVAGVCFYAGMLMAH-----SPAI-LLGLQLLNAIYIGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIA 356 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHh-----hHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHH
Confidence 77665544443332222111 1111 1111122222222223334456677777 569999999999999999999
Q ss_pred hhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhc
Q 011424 436 PAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK 478 (486)
Q Consensus 436 ~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~ 478 (486)
|.+.|.+.+.. |++..|.+.+++.+++.+..++
T Consensus 357 ~~l~G~i~~~~----------g~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK15011 357 GSLAGIVAEIW----------NYHAVFWFALVMIIATLFCLLR 389 (393)
T ss_pred HHHHHHHHHHh----------hhHHHHHHHHHHHHHHHHHHHh
Confidence 99999999987 7888998888888887777666
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-29 Score=243.97 Aligned_cols=384 Identities=20% Similarity=0.196 Sum_probs=288.9
Q ss_pred ChhHHHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHH
Q 011424 39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG 118 (486)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~ 118 (486)
+.+.+..++.+.++..++..+....++.+..+..-|+.. .+++..+..+...+.++++|.++||++|||+++.+
T Consensus 8 r~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~------valv~~a~~LP~~Llsl~aG~laDr~drrrili~~ 81 (524)
T PF05977_consen 8 RNRNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLM------VALVQAASTLPILLLSLFAGALADRFDRRRILILS 81 (524)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHH
Confidence 345677889999999999999999999999888888777 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc-----cchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhh
Q 011424 119 TASVVIFNTLFGL-----SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGF 192 (486)
Q Consensus 119 ~~~~~~~~~~~~~-----a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~ 192 (486)
.++..+..+..++ ..+.+.+++.-++.|++.+...|+ ++++.|..|+++...+.++.+...++..++||.++|.
T Consensus 82 ~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~ 161 (524)
T PF05977_consen 82 QLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGI 161 (524)
T ss_pred HHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHH
Confidence 8887766554443 247899999999999999999998 9999999999999999999999999999999999999
Q ss_pred hcccCccCCcccccccccccCCChhhHHHHHHHHHHHHHHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCC
Q 011424 193 LAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREA 272 (486)
Q Consensus 193 l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (486)
+.. .+| ....+.+.++..++.+..+...+++++..+.++ +.. .+.-.
T Consensus 162 Lva-------~~G---------~~~~f~inalsfl~~i~~l~~~~~~~~~~~~~~---e~~--------------~~~l~ 208 (524)
T PF05977_consen 162 LVA-------FFG---------AAAAFLINALSFLISILALLRWKPPPPPSSLPR---ERF--------------FSALR 208 (524)
T ss_pred HHH-------HHH---------HHHHHHHHHHHHHHHHHHHHHccccccccccch---hhh--------------hhhHH
Confidence 987 333 333345555544444444444433221111110 000 11112
Q ss_pred CcccccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011424 273 TPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG 352 (486)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (486)
..++.+.++|.+...++..++.++....+...+|.+..+. +|.++...|++.+..+++.+++++ ....+.++.+
T Consensus 209 ~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~-----l~~~a~~yGll~a~~gvGai~Gal-~~~~l~~~~~ 282 (524)
T PF05977_consen 209 EGLRYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDV-----LGGGASGYGLLLAAFGVGAILGAL-LLPRLRRRLS 282 (524)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHH-----hCCcHHHHHHHHHHHHHHHHHHHH-HHHHhhcccC
Confidence 3445566677777666666665555555556667665544 688899999999999999999998 5666777778
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHH
Q 011424 353 PIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFK 432 (486)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~ 432 (486)
+++.+..+.....++.+.+.+... .+ ...+..++.|++.........+..++.+|++.||++++++++....+.
T Consensus 283 ~~~lv~~~~~~~a~~~~~lal~~~-----~~-~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~ 356 (524)
T PF05977_consen 283 SRRLVLLASLLFALALLLLALSPS-----FW-LALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGM 356 (524)
T ss_pred cchhhHHHHHHHHHHHHHHhcchH-----HH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHH
Confidence 777777777666666555554332 22 223334455556666667778888999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhcccccc
Q 011424 433 AAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQ 483 (486)
Q Consensus 433 ~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~ 483 (486)
.+|..+.|.+.+.. |...++.+.+++.+++.++.....+++
T Consensus 357 ~lGsll~G~la~~~----------g~~~al~~a~~~lll~~~~~~~~~l~~ 397 (524)
T PF05977_consen 357 PLGSLLWGFLADHF----------GVRTALLIAGAALLLSALIALRFPLRQ 397 (524)
T ss_pred HHHHHHHHHHHHHh----------CHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 99999999999998 788888888777777666655423444
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-29 Score=236.63 Aligned_cols=364 Identities=12% Similarity=0.080 Sum_probs=258.2
Q ss_pred HHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHH
Q 011424 43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV 122 (486)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~ 122 (486)
+..+....+..++..+...+.+|.+++++|.++.+ .|++.+.+.+++.+++++.|++.||+|||+++.++.+++
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~------~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~ 78 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQ------AALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLY 78 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 55667777788888899999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc---cchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCc
Q 011424 123 VIFNTLFGL---SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE 198 (486)
Q Consensus 123 ~~~~~~~~~---a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~ 198 (486)
+++.+++.. .+|++.+++.|++.|+|.|...+. .+++.+..|+++|++.+++.+...++|..++|.+++.+.....
T Consensus 79 ~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~ 158 (410)
T TIGR00885 79 ALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNL 158 (410)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999888644 468999999999999999998875 8899999999999999999999999999999999998864210
Q ss_pred cCCcc-cccccc---------cccCCChhhHHHHHHHHHHHHHHHHhcCCcccCCCCCCCcccchhhhccccccchhhhc
Q 011424 199 KYPNL-FSSESL---------FGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEE 268 (486)
Q Consensus 199 ~~~~~-~gw~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (486)
..... .-++.. -...+||.++.+.+++.++..+...+.++++.+++ +++ +
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~~--~~~------------------~ 218 (410)
T TIGR00885 159 PHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNHS--DAK------------------Q 218 (410)
T ss_pred ccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc--ccc------------------c
Confidence 00000 000000 00234777777776655554433333322111100 000 0
Q ss_pred ccCCCcccccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011424 269 GREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLE 348 (486)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (486)
.+.....++++|+|.++...+..+++.....+..++++.|..+. ..+.+....+...........++++ ++.++.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~----~~~~~~~~a~~~~~~~~~~~~vGR~-~~~~l~ 293 (410)
T TIGR00885 219 ISFSASLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRL----IPGMTAGFAANYNIGAMVIFFISRF-IGTWLI 293 (410)
T ss_pred ccchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----cCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 00111334678888888877777777777766667777776432 1233444445455555566778887 667777
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHH
Q 011424 349 RILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGM 428 (486)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 428 (486)
||.++|+.+.+......++.++..+... . .........+++....+|..++...+..+++.+..+.++....
T Consensus 294 ~r~~~~~~l~i~~~~~~~~~ll~~~~~~---~----~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~- 365 (410)
T TIGR00885 294 SYLAAHKVLMAYAIIGMALCLGSIFAGG---H----VGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMAI- 365 (410)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHcCC---h----HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH-
Confidence 7778888887777766666665554321 1 1123333444566777799999999988876655555555443
Q ss_pred HHHHHHHhhhHHHHHHHH
Q 011424 429 SLFKAAGPAGGGALFSWA 446 (486)
Q Consensus 429 ~~g~~~~~~~~g~l~~~~ 446 (486)
+|+++.|.+.|.+.|..
T Consensus 366 -~Gga~~p~l~G~~~d~~ 382 (410)
T TIGR00885 366 -IGGGIVPPLQGFIIDMK 382 (410)
T ss_pred -hccchHHHHHHHHHHHh
Confidence 99999999999999954
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-30 Score=244.34 Aligned_cols=366 Identities=16% Similarity=0.220 Sum_probs=272.4
Q ss_pred HHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHhccc--hHHHHHHHHHHHH
Q 011424 69 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV--NFWMAVLTRFLLG 146 (486)
Q Consensus 69 ~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~--~~~~l~~~r~l~G 146 (486)
.+++.+.+| .+++.+.++.|+.+++++.|+++||+|.|+++..+.++.++++++...+. +++.+++.|++||
T Consensus 66 ~~~~ws~~~------k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqG 139 (466)
T KOG2532|consen 66 GEYDWSSTE------KGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQG 139 (466)
T ss_pred ceecCCHHH------HHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhH
Confidence 467888888 99999999999999999999999999999999999999999999998864 5568899999999
Q ss_pred hhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccCCcc-cccccccccCCChhhHHHHHH
Q 011424 147 SLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL-FSSESLFGKFPYFLPCLCISL 224 (486)
Q Consensus 147 ~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~~~-~gw~~~~~~~~~~~~~~~~~~ 224 (486)
++.|...|+ ..+.+.|.|++||++..++..++..+|.+++.+++|++.+ . +||+..| ++.++
T Consensus 140 l~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~-------s~~GW~sif---------Y~~g~ 203 (466)
T KOG2532|consen 140 LGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCE-------SSLGWPSIF---------YVFGI 203 (466)
T ss_pred HHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc-------cCCCCchHH---------HHHHH
Confidence 999999997 9999999999999999999999999999999999999998 3 6665555 77777
Q ss_pred HHHHHHHHH-HhcCCcccCCCCCCCcccchhhhccccccchhhhcccCCCcccccccchhhHHHHHHHHHHHhhhhhhhH
Q 011424 225 FAFGVTIAA-FWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSE 303 (486)
Q Consensus 225 ~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (486)
.+++..+++ ++..|+|.+++.-.++ +++.+++...+++. +++.+.+++++++++.+|...+..++.......+..
T Consensus 204 ~g~i~~~~w~~~~~d~P~~h~~is~~---El~~I~~~k~~~~~-~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~ 279 (466)
T KOG2532|consen 204 VGLIWFILWFLFYSDSPSKHPNISEK---ELKYIEKGKSEAHV-KKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLT 279 (466)
T ss_pred HHHHHHHHHHHHhcCCcccCCCCCHH---HHHHHHhccccccc-CCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 777766555 4455666553322111 11222222221111 111567899999999999999999999999999999
Q ss_pred HHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhh---------HHHHHHHHHHHHHHHHHHHHH
Q 011424 304 IFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGP---------IMVARIAGVLTIPLLTSYPYI 374 (486)
Q Consensus 304 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~ 374 (486)
+.|.|+.+. +|++..+.|++.++..+...+..+ +.+.+.|+..+ |..-.++.....++++.+.+.
T Consensus 280 y~PtY~~~V-----L~f~v~~~G~~salP~l~~~~~k~-~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~ 353 (466)
T KOG2532|consen 280 YLPTYLKEV-----LGFDVRETGFLSALPFLAMAIVKF-VAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFT 353 (466)
T ss_pred HhhHHHHHH-----hCCChhhhhHHHHHHHHHHHHHHH-HHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeec
Confidence 999999988 899999999999999999999988 55666665443 222223334444444444444
Q ss_pred HhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCCC
Q 011424 375 AMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASF 454 (486)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~ 454 (486)
...+ .+..+....+.. .+.+...+..+.-..+ ..|++.+..+|+.+....+.++++|.+.|.+.. ..+.
T Consensus 354 ~~~~---~~~a~~~l~~~~-~~~g~~~~Gf~~~~~~-~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~-~~t~----- 422 (466)
T KOG2532|consen 354 SDEH---RLLAVILLTIAI-GLSGFNISGFYKNHQD-IAPQHAGFVMGIINFVGALAGFIAPLLVGIIVT-DNTR----- 422 (466)
T ss_pred CCCc---chHHHHHHHHHH-HHcccchhhhHhhhhh-ccchHHHHHHHHHHHHHHHHHHHHHHheeeEeC-CCCH-----
Confidence 3322 112222222111 1222222222222222 256999999999999999999999999999985 2111
Q ss_pred CCchhHHHHHHHHHHHHHHHHhhc
Q 011424 455 LPGSQMVFFVLNVVEAIGVLMTFK 478 (486)
Q Consensus 455 ~~g~~~~f~~~~~~~~~~~~~~~~ 478 (486)
..|+.+|++.+++.+++.++..+
T Consensus 423 -~eW~~VF~i~a~i~~~~~i~f~~ 445 (466)
T KOG2532|consen 423 -EEWRIVFLIAAGILIVGNIIFLF 445 (466)
T ss_pred -HHHHHHHHHHHHHHHHhchheeE
Confidence 16999999999999999876655
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-28 Score=232.83 Aligned_cols=357 Identities=14% Similarity=0.115 Sum_probs=248.7
Q ss_pred HHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCc----hhhhHHHHHHHH
Q 011424 49 IVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRK----PVIIMGTASVVI 124 (486)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr----~~l~~~~~~~~~ 124 (486)
..+....+.+...|.+|.+.+|+|.|..+ .|++.+++.++..++++++|+++||+||| +.+.+...+.
T Consensus 12 ~~~~~~~~~g~~~p~l~~~l~~~g~s~~~------iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~-- 83 (382)
T PRK11128 12 SYFGYFFAYGVFLPFWSVWLKGQGYTPET------IGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF-- 83 (382)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhcCCCHHH------HHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--
Confidence 35555677889999999999999999999 99999999999999999999999999994 3333222222
Q ss_pred HHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccCCcc
Q 011424 125 FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL 203 (486)
Q Consensus 125 ~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~~~ 203 (486)
.......+++++.+++.|++.|++.+...|. .+++.++ +++|+++++......++|..+||++++++.+ +
T Consensus 84 ~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~-------~ 154 (382)
T PRK11128 84 AVAFWFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVS-------W 154 (382)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHH-------H
Confidence 2233445689999999999999988877776 6676666 4568889999999999999999999999998 4
Q ss_pred cccccccccCCChhhHHHHHHHHHHHHHHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCCCcccccccchh
Q 011424 204 FSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWP 283 (486)
Q Consensus 204 ~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (486)
+|| |..+...++..++..+...+.||++++.++++ + +++...+.++++|+|+
T Consensus 155 ~g~---------~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----------------~~~~~~~~~~i~~~~~ 206 (382)
T PRK11128 155 FGE---------QAILWILTAGVASMLLGQLLRPTIMPQGESRQ---Q----------------ESAGWPAWKALLKEPT 206 (382)
T ss_pred cCh---------hHHHHHHHHHHHHHHHHHHccCCCCCcccccc---c----------------cccccchHHHHHcChh
Confidence 454 44445555444333333344454322111000 0 0011235678899999
Q ss_pred hHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 011424 284 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVL 363 (486)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (486)
++...+..++.......+....+.|..+ .|.+..+.|.......+..++... ..+++.||+++++.+..+...
T Consensus 207 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~------~g~s~~~~g~~~~~~~~~~~~~~~-~~g~l~~r~~~~~~l~~~~~~ 279 (382)
T PRK11128 207 VWRFLLCVSLLQGSHAAYYGFSAIYWQA------AGYSASTIGYLWSLGVVAEVLIFA-FSNRLFRRWSARDLLLLSAIC 279 (382)
T ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHH------CCCCHhHHHHHHHHHHHHHHHHHH-HHHHHHHHCCHHHHHHHHHHH
Confidence 9887777776666655666666766632 588888999999888888887777 555667777988888777766
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHH-HHHHHHHHhhhHHHH
Q 011424 364 TIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTG-MSLFKAAGPAGGGAL 442 (486)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~-~~~g~~~~~~~~g~l 442 (486)
..+....+.... ..+ ...+..++.+.......+....+..+. +++++++.+++.+.. ..+|..++|.+.|.+
T Consensus 280 ~~~~~~~~~~~~-----~~~-~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l 352 (382)
T PRK11128 280 GVVRWGLMGSTT-----ALP-WLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFL 352 (382)
T ss_pred HHHHHHHHHhhh-----hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666555443322 122 223334444444444556666666775 567778999988744 567779999999999
Q ss_pred HHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHH
Q 011424 443 FSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLM 475 (486)
Q Consensus 443 ~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~ 475 (486)
+|.. |. ..++..+++.+++.+.
T Consensus 353 ~~~~----------g~-~~~~~~~~~~~~~~~~ 374 (382)
T PRK11128 353 YQHL----------GA-GVFWVMALVALPALFI 374 (382)
T ss_pred HHhc----------cH-HHHHHHHHHHHHHHHH
Confidence 9987 55 4666666666655443
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.7e-30 Score=241.43 Aligned_cols=357 Identities=13% Similarity=0.096 Sum_probs=242.8
Q ss_pred HHHHHHHHHHhhhhhhhhcccHHH-HHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHH
Q 011424 43 LFSIWIIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS 121 (486)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~ 121 (486)
++..+++.++.........+..|. +.+++|.++.+ .+++.+++.+++.+++++.|+++||+|||++++++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 76 (366)
T TIGR00886 3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQ------LGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLL 76 (366)
T ss_pred hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHH------hhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 455677777888888899999995 88999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccc-hHHHHHHHHHHHHhhccchhhHHHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCc--
Q 011424 122 VVIFNTLFGLSV-NFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE-- 198 (486)
Q Consensus 122 ~~~~~~~~~~a~-~~~~l~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~-- 198 (486)
..++.+++++++ +++.+++.|+++|++.+...+..+++.|++|+++|++++++.....++|..+++.+++.+.+...
T Consensus 77 ~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~ 156 (366)
T TIGR00886 77 LAIPCLWAGLAVQSYSVLLLLRLFIGIAGGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFG 156 (366)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhchhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999 99999999999999876665568899999999999999999998888888888887776654110
Q ss_pred -cCCcccccccccccCCChhhHHHHHH-HHHHHHHHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCCCccc
Q 011424 199 -KYPNLFSSESLFGKFPYFLPCLCISL-FAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKK 276 (486)
Q Consensus 199 -~~~~~~gw~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (486)
+.+...+||+.+ . ...++ ..+..++.....+|+++.++++++.+... . .. . .+++.....+
T Consensus 157 ~~~~~~~~w~~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~--~----~~~~~~~~~~ 219 (366)
T TIGR00886 157 AGLPAHLAWGWAF-----V---IVPAGILLLPALLIFFVGADTPPGKPATGKLSFKG--A-RW--S----VGTGALGDQL 219 (366)
T ss_pred ccccccccccchh-----H---HHHHHHHHHHHHHHHHhcccCCcccccchhccccc--c-cc--c----ccchhHHHHH
Confidence 001123444333 0 22222 22333344455566554322111100000 0 00 0 0000111345
Q ss_pred ccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 011424 277 SLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMV 356 (486)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (486)
+.+++|+++...+..++..........+.+.|..+. +|+++.+++.......+..+++++ ..+++.||+++|+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~-~~g~l~~r~g~~~~ 293 (366)
T TIGR00886 220 KVFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQ-----FGLSKVTAGAYASLGGLLGSLARP-LGGAISDRLGGARK 293 (366)
T ss_pred HHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCcHHHHHHHHHHHHHHHHHHhh-ccchHHHhhccchh
Confidence 677888887777776666655566667777777544 688899999988888888998887 66667777888777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHH
Q 011424 357 ARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLF 431 (486)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g 431 (486)
...+......+...+....... ...+ .............+...+..+....+..| +++|+++|+.+.++++|
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 294 LLMSFLGVAMGAFLVVLGLVSP-LSLA-VFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred HHHHHHHHHHHHHHHHhcCCCc-chHH-HHHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 6666555544444443322110 0111 11122222222333334455666677666 79999999999887765
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.9e-29 Score=233.06 Aligned_cols=335 Identities=16% Similarity=0.088 Sum_probs=241.5
Q ss_pred hhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHhccc
Q 011424 54 ALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV 133 (486)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~ 133 (486)
........+.+|.+.+|+|.+.++ .+++.+.+.++..+++++.|+++||+|||+++.++.++..++.+.+ .++
T Consensus 13 ~~~~~~~~~~lp~l~~~~~~s~~~------~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~ 85 (355)
T TIGR00896 13 RPALTSVGPLLPQIRSALGMSFSV------AGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAP 85 (355)
T ss_pred cCccccCcccHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hhc
Confidence 334467889999999999999999 9999999999999999999999999999999999999988888877 788
Q ss_pred hHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccCCccccccccccc
Q 011424 134 NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGK 212 (486)
Q Consensus 134 ~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~~~~gw~~~~~~ 212 (486)
+++.+++.|++.|++.+...+. ..++.|++| ++|++++++.+.+.++|..+++.+++.+.+ ..+
T Consensus 86 ~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~-------~~~------- 150 (355)
T TIGR00896 86 GTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQ-------HSG------- 150 (355)
T ss_pred cHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhh-------
Confidence 9999999999999998887665 778888886 689999999999999999999999998876 221
Q ss_pred CCChhhHHHHHHHHHHHHHHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCCCcccccccchhhHHHHHHHH
Q 011424 213 FPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYC 292 (486)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (486)
.+||..+...++..++. ...++||.++++++++ +......++.+|+|.++...+..+
T Consensus 151 ~~w~~~f~~~~~~~~~~--~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~ 207 (355)
T TIGR00896 151 GHWQQALAWWALPALLA--LLAWIPQVRRRVAANQ---------------------TTTRLTPVRIWRSPLAWQVTVFFG 207 (355)
T ss_pred hhHHHHHHHHHHHHHHH--HHHHhhhhccccCCCC---------------------CCCCCCCchhhcCHhHHHHHHHHH
Confidence 12444444444333222 2234455432211100 001123456778888877666666
Q ss_pred HHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHH
Q 011424 293 VFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL-GPIMVARIAGVLTIPLLTSY 371 (486)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 371 (486)
+..........+.|.|+.+ .|++..+.+...+...++.+++++ ..+++.||. ++|+....+..+..++...+
T Consensus 208 ~~~~~~~~~~~~lp~~~~~------~g~~~~~~g~~~~~~~~~~i~~~~-~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~ 280 (355)
T TIGR00896 208 LQSGLYYSLIGWLPAILIS------HGASAATAGSLLALMQLAQAASAL-LIPALARRVKDQRGIVAVLAVLQLVGLCGL 280 (355)
T ss_pred HHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHHHHH-hHHHHHhhhccchHHHHHHHHHHHHHHHHH
Confidence 6555555666677777643 488899999999999999999998 455566666 55656666655555555444
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhc-cccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHh
Q 011424 372 PYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRA-VDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQ 447 (486)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~ 447 (486)
.+.... ..+ . ...+.+.+.....+.......+. .+++++++..++.+.+.+++.+++|.+.|.+.|..+
T Consensus 281 ~~~~~~---~~~--~--~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 281 LFAPMH---GLW--A--WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHhhhh---HHH--H--HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 433211 111 1 12233445555556555554433 345778999999999999999999999999999873
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-28 Score=233.45 Aligned_cols=386 Identities=12% Similarity=0.027 Sum_probs=257.0
Q ss_pred HHHHHHHhhhhhhhhcccHH-HHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCC-chhhhHHHHHHH
Q 011424 46 IWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGR-KPVIIMGTASVV 123 (486)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Gr-r~~l~~~~~~~~ 123 (486)
+....+..+....+..|.++ .+.+++|.+..+ .|++.+++.++..++++++|+++||+|| |+++.++.++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~------iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~ 80 (418)
T TIGR00889 7 LKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAE------IGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGA 80 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 45566677777777766665 566779999999 9999999999999999999999999965 778888888888
Q ss_pred HHHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHH----h----hhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhc
Q 011424 124 IFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYA----C----EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA 194 (486)
Q Consensus 124 ~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i----~----~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~ 194 (486)
++..+..+.++++.+++.|++.|++.+...+. .++. . |......|.+..| .+|.+++|.+++.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~ 154 (418)
T TIGR00889 81 LLLFFAAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLD 154 (418)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhc
Confidence 88888889999999999999999987665553 3332 2 2233334555544 467888888888774
Q ss_pred ccCccCCcccccccccccCCChhhHHHHHHHHHHHHHHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCCCc
Q 011424 195 QPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATP 274 (486)
Q Consensus 195 ~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (486)
. ...| .++.+.++..++..+..+++||+++.+++++ .+ . ++..+.+
T Consensus 155 ~----------------~~~~-~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~--~~-~--------------~~~~~~~ 200 (418)
T TIGR00889 155 I----------------ELSN-IQLYITAGSSALLGVFALTLPDIPVAKSTAK--MS-I--------------KVMLGLD 200 (418)
T ss_pred c----------------cchh-HHHHHHHHHHHHHHHHHhcCCCCCCCccccc--cC-H--------------HHHhhhh
Confidence 3 1112 2334444444454445567788653221110 00 0 0001122
Q ss_pred ccccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCc--cccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011424 275 KKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGG--LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG 352 (486)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (486)
.++++|+|+++...+..++..........+.+.|..+.-.... -+++....+...+...+..+++.+ ..+++.||+|
T Consensus 201 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~-~~g~l~dr~g 279 (418)
T TIGR00889 201 AFILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFIL-TIPFFLKRFG 279 (418)
T ss_pred HHHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHhC
Confidence 3457788887776666666554443444445555433100000 023346678888888889998887 5566677779
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHH-HHHHHH
Q 011424 353 PIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAM-TGMSLF 431 (486)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~~g 431 (486)
+|+.+..+..+..+....+..... .........+..++.+.......+....++.|.+|++.|++++|+.+ ....+|
T Consensus 280 ~r~~l~~~~~~~~v~~~l~~~~~~--~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg 357 (418)
T TIGR00889 280 IKKVMLLSLVAWALRFGFFAYGDP--EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFG 357 (418)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCc--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhH
Confidence 999988888777666555443211 11111223333444444445556677788899999999999999997 567899
Q ss_pred HHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhccccccCC
Q 011424 432 KAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQRH 485 (486)
Q Consensus 432 ~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 485 (486)
.++||.+.|.+.|..+.... .||+..|.+.+++.+++.++.++ +.||++
T Consensus 358 ~~iGp~l~G~l~~~~g~~~~----~~~~~~f~~~~~~~~i~~~l~~~-~~~~~~ 406 (418)
T TIGR00889 358 SLLGYILSGVMVEKMFAYGT----FDWQTMWLFFAGYIAILAVLFMI-FFKYSH 406 (418)
T ss_pred HHHHHHHHHHHHHHhccccC----CchHHHHHHHHHHHHHHHHHHHH-HhCCcc
Confidence 99999999999998632110 05888999888888887777766 566654
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-28 Score=240.67 Aligned_cols=410 Identities=13% Similarity=0.079 Sum_probs=270.3
Q ss_pred HHHHHHhhhh--hhhhcccHHHHHHHhcccccchhhh-hHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHH
Q 011424 47 WIIVLCTALP--ISSLFPFLYFMIKDFQIAKREEDIG-SYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVV 123 (486)
Q Consensus 47 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~ 123 (486)
....+..+.+ .....+..+.+.++...+..+.... ...+++.+.+.++..+++++.|+++|++|||+.++++.+.+.
T Consensus 51 ~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~ 130 (513)
T KOG0254|consen 51 ALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFL 130 (513)
T ss_pred HHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3344444443 4556666666666443222221100 125899999999999999999999999999999999999999
Q ss_pred HHHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccCCc
Q 011424 124 IFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPN 202 (486)
Q Consensus 124 ~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~~ 202 (486)
++.+++++++|+++++++|+++|+|.|..... +.+++|..|++.||...+..+....+|..++..++....+
T Consensus 131 iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~------- 203 (513)
T KOG0254|consen 131 IGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSK------- 203 (513)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhcc-------
Confidence 99999999999999999999999998887775 9999999999999999999999999999999555544443
Q ss_pred ccccccccccCCChhhHHHHHHHHHHHHHHHHhcCCcccCCCCCCCcccc--hhhhccc--cccchhh-----------h
Q 011424 203 LFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDV--SYDALES--ASAEVKE-----------E 267 (486)
Q Consensus 203 ~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~-----------~ 267 (486)
. .++||.++.+..+++++..+..+++||+|++.-++.+..+. ....+.. .++.+.+ .
T Consensus 204 ~--------~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~ 275 (513)
T KOG0254|consen 204 V--------YAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEA 275 (513)
T ss_pred C--------CccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhh
Confidence 0 13577777888888888877788999999886554333222 1111111 1110000 0
Q ss_pred cccCCC-cccccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHH
Q 011424 268 EGREAT-PKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPF 346 (486)
Q Consensus 268 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (486)
...+.. .++++++........+...+..+.+.........|..+ ..+..|.+... .......++..+++.. ++..
T Consensus 276 ~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~--if~~~g~~~~~-~~~~~~~~~v~~~~t~-~~~~ 351 (513)
T KOG0254|consen 276 EVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTT--IFKSAGLKSDT-FLASIILGVVNFLGTL-VATY 351 (513)
T ss_pred hcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHH--HHHhcCCCCch-HHHHHHHHHHHHHHHH-HHHH
Confidence 001111 23334442222223333333333332221111122221 22224544333 4444555666666666 4456
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhh-------hhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhh
Q 011424 347 LERILGPIMVARIAGVLTIPLLTSYPYIAMLSG-------FGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGA 419 (486)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 419 (486)
+-||.|||+.+..+.....++..++........ ...+..+....+....+..+..+..+.+.+|.+|.+.|++
T Consensus 352 lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~ 431 (513)
T KOG0254|consen 352 LVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSK 431 (513)
T ss_pred HHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhh
Confidence 666679999999998888888777765543321 1234445555566667778888889999999999999999
Q ss_pred HHhHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHH-HhhccccccCCC
Q 011424 420 ANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVL-MTFKPFLAQRHD 486 (486)
Q Consensus 420 ~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~-~~~~~~~~~~~~ 486 (486)
+.++.....++.+.+.........+.. +....|..++.++.+... +.++ ..||+|.
T Consensus 432 ~~s~~~~~n~~~~~~v~~~~~~~~~~~----------~~~~~f~~f~~~~~~~~~~fv~~-~~pETkg 488 (513)
T KOG0254|consen 432 GASLAVAVNWLWNFLISFFFPFITEAL----------GIGGTFGYFGGICLLSLIIFVFF-FVPETKG 488 (513)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhc----------cccchHHHHHHHHHHHHHHHheE-EcccCCC
Confidence 999999999988887766665555544 224466666666666666 5666 6898763
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-27 Score=228.07 Aligned_cols=369 Identities=15% Similarity=0.195 Sum_probs=252.6
Q ss_pred HHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhc-----CCch-hhhHHHH
Q 011424 47 WIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-----GRKP-VIIMGTA 120 (486)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~-----Grr~-~l~~~~~ 120 (486)
....+.+++..+.....+|.+.++.|.+.++ +|++..+... .+..+++|+++||+ |||| .+.++.+
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~------ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~ 76 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWMTVEGLDIQT------IGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQV 76 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHH
Confidence 3445667788888899999999999999999 9999777665 59999999999999 8876 6888888
Q ss_pred HHHHHHHHHhcc---chHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhccc
Q 011424 121 SVVIFNTLFGLS---VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP 196 (486)
Q Consensus 121 ~~~~~~~~~~~a---~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~ 196 (486)
+.+++....++. .+++.+++..++.++..+...+. .+++.|++|+|+|+++.++...+.++|.++++.+++.+.+
T Consensus 77 ~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~- 155 (402)
T PRK11902 77 GLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLAD- 155 (402)
T ss_pred HHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHh-
Confidence 888888777776 45788888888888877777776 9999999999999999999999999999999999998886
Q ss_pred CccCCcccccccccccCCChhhHHHHHHHHHHHHHHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCCCccc
Q 011424 197 AEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKK 276 (486)
Q Consensus 197 ~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (486)
. .++||..+.+.++..++..+..+++||++++++++++ . +++.....+
T Consensus 156 ------~--------~~gw~~~f~i~a~~~l~~~l~~~~~~e~~~~~~~~~~----~--------------~~~~~~~~~ 203 (402)
T PRK11902 156 ------R--------VLGWGNTYLLMAGLMLAGALTTLWAPEPEVPARPPRS----L--------------GEAVVGPLR 203 (402)
T ss_pred ------c--------ccCHHHHHHHHHHHHHHHHHHHHhcCCCcccccccch----h--------------HHHHHHHHH
Confidence 1 1255666677666665555555667776443211110 0 000112456
Q ss_pred ccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHH-HHHHHHHHHHHHHHHhhhhHH
Q 011424 277 SLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGF-SLLVFQLSLYPFLERILGPIM 355 (486)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 355 (486)
+++|||.++..++..++..........+.+.++.+ ++|+++.+.++.....+. +.+++.. ..+++.||+++|+
T Consensus 204 ~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-----~~G~~~~~~g~~~~~~~~~~~i~g~~-~~g~l~~r~g~~~ 277 (402)
T PRK11902 204 DFFSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIR-----GAGFSAGEVGIVNKTLGLAATIVGAL-AGGTLMVRLGLYR 277 (402)
T ss_pred HHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHH-----hcCCCHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHhHHH
Confidence 78899988877766655554333322333333322 268899999998866554 4667766 6677777788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH----HHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHH
Q 011424 356 VARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCAS----VVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLF 431 (486)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g 431 (486)
....+..+..+..+.+.......+ ..+. ..... +..+............++++..| ++..++.+....++
T Consensus 278 ~l~~~~~~~~l~~l~~~~~~~~~~-~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~ 351 (402)
T PRK11902 278 SLMLFGVLQAVSNLGYWVLAVTPK-HLWT-MALAIGIENLCGGMGTAAFVALLMALCNRSFS----ATQYALLSALASVG 351 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC-cHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHHH
Confidence 776665554444333322221111 1121 11111 22222333334444555555455 44556666677788
Q ss_pred HHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhc
Q 011424 432 KAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK 478 (486)
Q Consensus 432 ~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~ 478 (486)
..+++.+.|.+.|.. |+...|...+.+++++.++.+.
T Consensus 352 ~~~~~~~~G~l~~~~----------G~~~~f~~~~~~~~~~~~~~~~ 388 (402)
T PRK11902 352 RVYVGPTSGYLVEAY----------GWPGFYLMTVVIALPGLALLWL 388 (402)
T ss_pred HHHHHHHHHHHHHHh----------ChHHHHHHHHHHHHHHHHHHHH
Confidence 887778999999998 8999999998888888777654
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-28 Score=235.73 Aligned_cols=380 Identities=12% Similarity=0.091 Sum_probs=241.6
Q ss_pred HHHHHHHHHHHhhhhhhhhcccHHHHHH-HhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHH
Q 011424 42 ELFSIWIIVLCTALPISSLFPFLYFMIK-DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA 120 (486)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~ 120 (486)
..+.+.+..++..+..+...|.+|.+.+ ++|.+..+ .|++.+++.++..++++++|+++||+|||++++++..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~------~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~ 84 (420)
T PRK09528 11 NYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTD------TGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIIS 84 (420)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 4556666777777777888888886655 49999999 9999999999999999999999999999999988766
Q ss_pred HHHHHHHHHh---ccc-----hHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhh
Q 011424 121 SVVIFNTLFG---LSV-----NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGG 191 (486)
Q Consensus 121 ~~~~~~~~~~---~a~-----~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~ 191 (486)
+.+++..... .++ .+...++++++.|.+.....+. ..+..+ . .+++++.++......++|..++|++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g 162 (420)
T PRK09528 85 GLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAG 162 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHH
Confidence 6555433221 111 1111222333333332222232 333222 2 345777888889999999999999999
Q ss_pred hhcccCccCCcccccccccccCCChhhHHHHHHHHHHHHHHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccC
Q 011424 192 FLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGRE 271 (486)
Q Consensus 192 ~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (486)
.+.+ .+ |+.+++..++.+++..+..++.++++++++.++++.+. + +++..
T Consensus 163 ~l~~--------~~---------~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~----~~~~~ 212 (420)
T PRK09528 163 ILFN--------IN---------PQINFWLGSGSALILLVLLFFAKPDAPSTAKVANALGA---------N----ASAVS 212 (420)
T ss_pred HHHh--------cC---------chHhHHHHHHHHHHHHHHHhcccccccchhhhccchhc---------c----ccccc
Confidence 8875 23 34444566655555554444443332221110000000 0 00111
Q ss_pred CCcccccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011424 272 ATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL 351 (486)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (486)
.++.++.+|||+++...+..+........+....+.|..+.. .+.+.+..+.+.+.+...+...++.+ ..+++.||+
T Consensus 213 ~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~-~~g~l~dr~ 289 (420)
T PRK09528 213 LKDALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFF--ATPEQGTRVFGYLNSFQVFLEALIMF-FAPFIINRI 289 (420)
T ss_pred HHHHHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHH--hccCcchHHHHHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence 123445778888766555444444333344445566654331 11355667788988888888888877 666777778
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhH-HHHHHHH
Q 011424 352 GPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGI-AMTGMSL 430 (486)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~-~~~~~~~ 430 (486)
++|+....+..+..+...++.+... .+ .+.....+.+.......+....+..+.+|++.+++..+. .++...+
T Consensus 290 g~~~~~~~~~~l~~~~~~l~~~~~~-----~~-~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l 363 (420)
T PRK09528 290 GAKNALLLAGTIMAVRIIGSGFATG-----PL-EVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQL 363 (420)
T ss_pred CcchhhHHHHHHHHHHHHHHHhccc-----HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHH
Confidence 9998887777766665555544321 12 222223333333333444556677888899999988766 6778899
Q ss_pred HHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhc
Q 011424 431 FKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK 478 (486)
Q Consensus 431 g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~ 478 (486)
|.+++|.+.|++.|.. ||+.+|...+++.++..++.++
T Consensus 364 g~~ig~~~~G~l~~~~----------G~~~~f~~~~~~~~i~~~~~~~ 401 (420)
T PRK09528 364 GAVFLSTLAGNLYDSI----------GFQGTYLILGGIVLLFTLISVF 401 (420)
T ss_pred HHHHHHHHHHHHHHhh----------CchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987 8999999888887776665554
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-27 Score=227.21 Aligned_cols=378 Identities=13% Similarity=0.141 Sum_probs=251.1
Q ss_pred HHHHHHHHHHHhhhhhhhhcccHHHHH-HHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHH
Q 011424 42 ELFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA 120 (486)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~ 120 (486)
.++.+....++.........|.+|.+. +++|.++.+ .|++.+++.++..+++++.|+++||+|||+.++.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~ 76 (396)
T TIGR00882 3 NFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTD------TGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIIS 76 (396)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 356666777888888889999998664 568999999 9999999999999999999999999999999998777
Q ss_pred HHHHHHHHH---hcc-----chHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhh
Q 011424 121 SVVIFNTLF---GLS-----VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGG 191 (486)
Q Consensus 121 ~~~~~~~~~---~~a-----~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~ 191 (486)
..++..... .+. +.+..+++.|++.|++.+...+. ..+..|..+ ++++.++......++|.++||.+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g 154 (396)
T TIGR00882 77 GLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAG 154 (396)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHh
Confidence 665544322 222 23345567788889887777775 666666533 3456777888888999999999999
Q ss_pred hhcccCccCCcccccccccccCCChhhHHHHHHHHHHHHHHHHh-cCCcccCCCCCCCcccchhhhccccccchhhhccc
Q 011424 192 FLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFW-LPETLHRHNDDDDSCDVSYDALESASAEVKEEEGR 270 (486)
Q Consensus 192 ~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (486)
.+.+ . +|+.++...++..++..+..+. .||++++++ ++++.+ . +++++
T Consensus 155 ~l~~--------~---------~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------~------~~~~~ 203 (396)
T TIGR00882 155 ILFS--------I---------DPQIVFWLGSGFALILMLLLMFAKPKAPSSAT-VANALG-------A------NASAF 203 (396)
T ss_pred hhhc--------c---------CchHHHHHHHHHHHHHHHHHHHhCCCCchhhh-hhcccc-------c------ccCCC
Confidence 8764 2 3455556666666655444443 344322111 000000 0 00111
Q ss_pred CCCcccccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011424 271 EATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI 350 (486)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (486)
+.++.++++|||+++...+..++..........+.+.|+.+... +.+.+....|.......+...++.. ..+++.||
T Consensus 204 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~--~~~~~~~~~g~~~~~~~i~~~~~~~-~~g~l~~r 280 (396)
T TIGR00882 204 SLKLALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFA--TPQQGTRVFGYVTTMGELLNALIMF-CAPLIINR 280 (396)
T ss_pred CHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccccchHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 22345678899988766665555444444444456666654321 1245566778888888888888877 55666777
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhH-HHHHHH
Q 011424 351 LGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGI-AMTGMS 429 (486)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~-~~~~~~ 429 (486)
.++|+...++..+..+......... ..+. ..+..++.+............+..+..|++.++++.+. .+....
T Consensus 281 ~g~~~~l~~~~~l~~l~~~~~~~~~-----~~~~-~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~ 354 (396)
T TIGR00882 281 IGAKNALLIAGTIMSVRIIGSSFAT-----TALE-VVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQ 354 (396)
T ss_pred hccchhHHHHHHHHHHHHHHHHhcC-----ChHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHH
Confidence 7999888777766665554433321 1111 22223333333322233344455666788888887776 577899
Q ss_pred HHHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhh
Q 011424 430 LFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTF 477 (486)
Q Consensus 430 ~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~ 477 (486)
+|++++|.+.|++.|.. |++.+|.+.+++.++..+...
T Consensus 355 lg~~~~~~l~G~l~~~~----------G~~~~f~~~~~~~~i~~~~~~ 392 (396)
T TIGR00882 355 LAMIFLSTLAGNMYDSI----------GFQGAYLVLGCIVLLFTLISV 392 (396)
T ss_pred HHHHHHHHhHHHHHHhc----------ccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988 899999998888887766554
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=233.18 Aligned_cols=436 Identities=15% Similarity=0.079 Sum_probs=278.7
Q ss_pred CCChhHHH---HHHHHHHHhhhhhhhhcccHHHHHHHh-cccc-cchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCC
Q 011424 37 GLPITELF---SIWIIVLCTALPISSLFPFLYFMIKDF-QIAK-REEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGR 111 (486)
Q Consensus 37 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Gr 111 (486)
..+|+.+. +..++.+.+.++..+++.+.|.+...+ +.+. ..+..+-..+.+..+..+|.++||+++|+++||+||
T Consensus 34 g~qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GR 113 (538)
T KOG0252|consen 34 GLQWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGR 113 (538)
T ss_pred chhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 34455444 455577888999999999998876655 3321 111222337889999999999999999999999999
Q ss_pred chhhhHHHHHHHHHHHHHhccc-------hHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhH
Q 011424 112 KPVIIMGTASVVIFNTLFGLSV-------NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGL 183 (486)
Q Consensus 112 r~~l~~~~~~~~~~~~~~~~a~-------~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~ 183 (486)
|+++...++++.+++++++++. -+.++...|++.|+|.|.-.|. .+..+|...+++||...+.+.+..++|.
T Consensus 114 K~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gi 193 (538)
T KOG0252|consen 114 KKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGI 193 (538)
T ss_pred hhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhH
Confidence 9999999999999999888742 3688999999999999999997 8888999999999999999998999998
Q ss_pred HHHhhhhhhhcccCccCCcccccccccccCCChhhHHHHHHHHHHHHHHHHhcCCcccCCCCCCCccc----chhhhccc
Q 011424 184 IIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCD----VSYDALES 259 (486)
Q Consensus 184 ~ig~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~----~~~~~~~~ 259 (486)
..|.+++-.+....+...+.-+-..-. +.-||+.+.+..++++..+...+.+||+++......++.+ ...+.+..
T Consensus 194 laG~ivt~Iv~~~fe~~~~~~~~~~~l-d~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~ 272 (538)
T KOG0252|consen 194 LAGGIVALIVSAIFEKIFNGPSTYPHL-DGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKVLSV 272 (538)
T ss_pred hhccHHHHHHHHHHhccCCCCCCchHH-HHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhcccccccc
Confidence 888887776654222111111111111 4458998899999998888888999999877521111100 00000000
Q ss_pred cccchh--hhcccCC----CcccccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHH------
Q 011424 260 ASAEVK--EEEGREA----TPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGE------ 327 (486)
Q Consensus 260 ~~~~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------ 327 (486)
..++++ +...+.+ ..+...+..+....++.....++....++ ++.-+.+..+.+..|+.+....+
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiaf---y~~nL~~s~I~~~ig~~~~~~~~~~~~~v 349 (538)
T KOG0252|consen 273 DIEAESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAF---YGQNLFQSVIFSAIGVIPSANTYHELFKV 349 (538)
T ss_pred ccchhhccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhh---hccccHHHHHHHhhccCCCcchHHHHHHH
Confidence 000000 0011111 11222222332222222222222222222 11111222223334555544433
Q ss_pred --HHHHHHH-HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 011424 328 --VLAITGF-SLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGL 404 (486)
Q Consensus 328 --~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (486)
...+... +.+++.. +...+.|++||++....++.+..+..+.+....+... ......+...+...+...+.....
T Consensus 350 A~~~~iia~~~~vPGyw-~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~-~~~Gf~v~y~l~~ff~NFGPn~tt 427 (538)
T KOG0252|consen 350 AEGNLIIAVCSTVPGYW-FTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLE-NTIGFVVLYSLTFFFGNFGPNATT 427 (538)
T ss_pred HHHHHHHHHHccCCcee-EEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCccccc-ccCceeehHHHHHHHHhcCCCcee
Confidence 1111111 2222333 3334466679999999998888877776654332111 111122222333344556666678
Q ss_pred hhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhccccccC
Q 011424 405 FILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQR 484 (486)
Q Consensus 405 ~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 484 (486)
..+.+|.+|.+.|++..|+....+-+|++++...++++.+.. .+ +..|...++++++++++++.+..++ +||+
T Consensus 428 fivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~----yp-~~~g~~~v~~i~~~~~~~gi~~T~l--~pEt 500 (538)
T KOG0252|consen 428 FIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHN----YP-PNIGVRNVFIILAGCMLLGILFTLL--IPET 500 (538)
T ss_pred EEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhcc----CC-ccccchHHHHHHHHHHHHhHheeEE--eecc
Confidence 888999999999999999999999999999999998888732 11 1127899999999999999999888 7786
Q ss_pred C
Q 011424 485 H 485 (486)
Q Consensus 485 ~ 485 (486)
+
T Consensus 501 k 501 (538)
T KOG0252|consen 501 K 501 (538)
T ss_pred c
Confidence 5
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.2e-28 Score=209.27 Aligned_cols=398 Identities=15% Similarity=0.093 Sum_probs=273.3
Q ss_pred CChhHHHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhH
Q 011424 38 LPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM 117 (486)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~ 117 (486)
.++............+.+......-+.|...+.+|.+..+ ..++....+.+..+++-.+|.++|++|||+.+.+
T Consensus 75 fq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q------~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~ 148 (528)
T KOG0253|consen 75 FQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQ------APLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNL 148 (528)
T ss_pred chhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhh------hhHHHHHHHhhhhhhhhhhheehhhhhcchhhhh
Confidence 3444455556666666776677777788999999998888 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhccc
Q 011424 118 GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP 196 (486)
Q Consensus 118 ~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~ 196 (486)
..+..++..++.+.++|+..+++.|.+.|+|.|. .|. .++-.|..|..+|...+-.. ..+.+|.++...++-....
T Consensus 149 T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~- 225 (528)
T KOG0253|consen 149 TFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMS- 225 (528)
T ss_pred hHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHH-
Confidence 9999999999999999999999999999999888 554 88889999999999777666 8999999999999988887
Q ss_pred CccCCcccccccccccCCChhhHHHHHHHHHHHHHHHHhcCCcccCCCCCCCcccchh--hhcc----------------
Q 011424 197 AEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSY--DALE---------------- 258 (486)
Q Consensus 197 ~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~--~~~~---------------- 258 (486)
.+|||+.+ .....+..+.....+++||+|+..-.+.++.++.+ +++.
T Consensus 226 ------~~gwr~~l---------~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~ 290 (528)
T KOG0253|consen 226 ------NFGWRYLL---------FTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSA 290 (528)
T ss_pred ------hhhHHHHH---------HHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeeh
Confidence 56666554 56666666677788899999988655444333221 1110
Q ss_pred --ccccchh---h----hcccCCCcccccccchhhHHHHHHHHHHHhhhhhhhHHHHH---hhcCcccc----------C
Q 011424 259 --SASAEVK---E----EEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSL---WANSPKKL----------G 316 (486)
Q Consensus 259 --~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~----------~ 316 (486)
++++++. + ..++...+..+++..+-.+..++....++...+++++..-+ +.+....- .
T Consensus 291 ~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~ 370 (528)
T KOG0253|consen 291 IDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTEL 370 (528)
T ss_pred hhhhhhhhhchhhhhhccccccccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHH
Confidence 0000000 0 11222334445554443344444444443333333222211 11111000 0
Q ss_pred c----cccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 011424 317 G----LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVV 392 (486)
Q Consensus 317 ~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (486)
+ ...+...--.-..+..+..+.|.+ +..++.+|+|||+.+....++..++.+.+....... ...+..+.
T Consensus 371 e~~~~c~~s~~~dYrdllitslaefPGlL-It~~iverlGRKkTMal~l~~f~iflfll~~c~~rn------~~tvllf~ 443 (528)
T KOG0253|consen 371 ETRANCPLSVAKDYRDLLITSLAEFPGLL-ITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRN------AYTVLLFT 443 (528)
T ss_pred HhhhcCCccchhHHHHHHHHHHhhCCchh-HHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcc------hhHHHHHH
Confidence 0 011111111223455677778877 566666778999999988888777766665543322 22233344
Q ss_pred HhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHH
Q 011424 393 KNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIG 472 (486)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~ 472 (486)
.-++..+.+...+.+..|.+|...|+++.|.+....++|+++.|.++ ...+.. ...+..+.+.+++++
T Consensus 444 arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA-~~~e~s-----------~sl~i~vy~~~~ila 511 (528)
T KOG0253|consen 444 ARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA-MRAELS-----------TSLPIFVYGALFILA 511 (528)
T ss_pred HHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH-HHhccc-----------eeehHHHHHHHHHHH
Confidence 44566778888999999999999999999999999999999999988 333222 344556667777777
Q ss_pred HHHhhc
Q 011424 473 VLMTFK 478 (486)
Q Consensus 473 ~~~~~~ 478 (486)
.+...+
T Consensus 512 gIavcf 517 (528)
T KOG0253|consen 512 GIAVCF 517 (528)
T ss_pred HHHhee
Confidence 766655
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.1e-28 Score=260.66 Aligned_cols=366 Identities=16% Similarity=0.064 Sum_probs=249.3
Q ss_pred HHHHHHHHHHHhhhhh-hhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHH
Q 011424 42 ELFSIWIIVLCTALPI-SSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA 120 (486)
Q Consensus 42 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~ 120 (486)
.+...+++.++..+.. .......+.+.++++.+... .+.+++.+++.+++.++++++|+++||+|||++++++.+
T Consensus 10 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~ 85 (1146)
T PRK08633 10 GFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQV----ILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKL 85 (1146)
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHH----HHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHH
Confidence 3445555555554443 34445556666777665433 227899999999999999999999999999999999887
Q ss_pred HHHHHHHHHh---ccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhccc
Q 011424 121 SVVIFNTLFG---LSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP 196 (486)
Q Consensus 121 ~~~~~~~~~~---~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~ 196 (486)
+..+..++.. .+++++.++++|+++|++.+...++ .+++.|++|+++|++++++.+.+.++|.++|+++++++.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~- 164 (1146)
T PRK08633 86 FEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFE- 164 (1146)
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHH-
Confidence 7666555443 4578999999999999999998887 9999999999999999999999999999999999999986
Q ss_pred CccCCcccccc--cccccCCChhhHHHHHHHHHHHHHHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCCCc
Q 011424 197 AEKYPNLFSSE--SLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATP 274 (486)
Q Consensus 197 ~~~~~~~~gw~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (486)
.+++. ..+ .+.++..++......++.++..+.+||+++....+++..+.. . .......
T Consensus 165 ------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~----~~~~~~~ 224 (1146)
T PRK08633 165 ------SVNGNTPSEI-LGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFDKKKYL---------F----PKLLWRN 224 (1146)
T ss_pred ------hhcccccccc-ccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccccccccc---------c----HHHHHHH
Confidence 21100 000 111222222233333334445556777664432211000000 0 0001123
Q ss_pred ccccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccc-hhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011424 275 KKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQ-MVGEVLAITGFSLLVFQLSLYPFLERILGP 353 (486)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (486)
++.+++++.++...+..++.......+..+++.|+... +|++.. ..+++.+...++.+++.+ +.+++.||.++
T Consensus 225 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~~g~~~~~~~ig~~~g~~-~~g~l~~r~~~ 298 (1146)
T PRK08633 225 LKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEV-----LGLDNTFQVQYLLAASAIGIGIGSL-LAGRLSGRHIE 298 (1146)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-----hCCCcHHHHHHHHHHHHHHHHHHHH-HHHHHhCCceE
Confidence 45677888887776666665555555556667666544 688888 899999999999999988 56666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHH
Q 011424 354 IMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKA 433 (486)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ 433 (486)
++.+.++.++..++.+.+.+.. ......+..++.+++.....+...+++.+..|++.||+++|+.+++..++.+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~ 372 (1146)
T PRK08633 299 LGLVPLGALGLALSLFLLPTAP------SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGML 372 (1146)
T ss_pred ccchhHHHHHHHHHHHHHHHhh------hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHH
Confidence 7776666655555554444332 1112333344445555556667788888889999999999999999999998
Q ss_pred HHhhhHHHHHH
Q 011424 434 AGPAGGGALFS 444 (486)
Q Consensus 434 ~~~~~~g~l~~ 444 (486)
+++.+.+.+..
T Consensus 373 ~~~~~~~~l~~ 383 (1146)
T PRK08633 373 LFLALTTLFSG 383 (1146)
T ss_pred HHHHHHHHHHH
Confidence 88877766544
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-28 Score=261.00 Aligned_cols=342 Identities=14% Similarity=0.084 Sum_probs=238.4
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhH---HHHHHHHHHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHH
Q 011424 84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM---GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYA 159 (486)
Q Consensus 84 ~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~---~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i 159 (486)
.++..+++.++++++++++|+++||+|||+++.. ..+...+..+.+...+++++++++|+++|++.+...|+ .+++
T Consensus 54 ~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l 133 (1140)
T PRK06814 54 VTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSIL 133 (1140)
T ss_pred HHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhh
Confidence 7888999999999999999999999999998643 22333333333344589999999999999999999887 9999
Q ss_pred hhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccCCcccccccccccCCChhhHHHHHHHHHHHHHHHHhcCCc
Q 011424 160 CEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPET 239 (486)
Q Consensus 160 ~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 239 (486)
.|++|+++|++++++.+++.++|.++||++++++.+ .. +|+..++...+.+++.+++.+++|++
T Consensus 134 ~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~-------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (1140)
T PRK06814 134 PDHLNKDELLGANALVEAGTFIAILLGTIIGGLATI-------SG---------NFVILVALLMGIAVLGWLASLFIPKT 197 (1140)
T ss_pred HhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHh-------cc---------ccHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 999999999999999999999999999999999998 33 44444444445555555566667766
Q ss_pred ccCCCCCCCcccchhhhccccccchhhhcccCCCcccccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccc
Q 011424 240 LHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLN 319 (486)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 319 (486)
++.....+...... .+....++.+.+++.++...+..++..+....+..++|.|..+. +|
T Consensus 198 ~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-----~g 257 (1140)
T PRK06814 198 GNAAPDLKIDRNII---------------RSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKET-----LG 257 (1140)
T ss_pred CCCCCCCeeccchH---------------HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----cC
Confidence 43322111000000 00112456677889888888877777766666777788887654 68
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH---------------hhhhhhHHH
Q 011424 320 YSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIA---------------MLSGFGLAF 384 (486)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~ 384 (486)
.++.+.|++.+..+++.+++++..++ +.++..+++.+..+.++..++.+.+.+.. .......+
T Consensus 258 ~~~~~~g~~~~~~~~g~~ig~~~~g~-l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~- 335 (1140)
T PRK06814 258 GDENVATLFLAVFSVGVAVGSFLASK-LSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGW- 335 (1140)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHH-HhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccH-
Confidence 89999999999999999999985544 44443444444433333333332222210 00001122
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHH
Q 011424 385 LLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFV 464 (486)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~ 464 (486)
.+.+..++.+++.....+...+++++.+|++.+|+++|+.+++..++..+++.+.|.+.+.. .++...+++
T Consensus 336 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~---------~~~~~~~~~ 406 (1140)
T PRK06814 336 RILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALG---------FSIPWIILF 406 (1140)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhc---------cCHHHHHHH
Confidence 22334444555666666778889999999999999999999999999999999999987543 145555555
Q ss_pred HHHHHHHH
Q 011424 465 LNVVEAIG 472 (486)
Q Consensus 465 ~~~~~~~~ 472 (486)
.+.+.++.
T Consensus 407 ~~~~~~~~ 414 (1140)
T PRK06814 407 IALANLIV 414 (1140)
T ss_pred HHHHHHHH
Confidence 55443433
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-29 Score=220.34 Aligned_cols=337 Identities=18% Similarity=0.172 Sum_probs=249.7
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhh
Q 011424 84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEI 162 (486)
Q Consensus 84 ~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~ 162 (486)
+|++.+.+.+.+.+.+++.|.+.||+|+|..+++|+.++..+++++++.++++.++++|.+||+|.+...++ .++++|.
T Consensus 108 iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglamlAd~ 187 (464)
T KOG3764|consen 108 IGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAMLADV 187 (464)
T ss_pred hhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999999887 9999999
Q ss_pred ccch-hhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccCCcccccccccccCCChhhHHHHHHHHHHHHHHHHhcCCccc
Q 011424 163 FREE-HQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLH 241 (486)
Q Consensus 163 ~~~~-~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 241 (486)
+|++ +|++++|+...+.++|..+||+.||++.+ ..|++.+|++.+++.++-..+.+++-|+.+
T Consensus 188 f~~d~er~~vmGialgfislG~lvgPpfGGilYe----------------~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~ 251 (464)
T KOG3764|consen 188 FPEDNERGSVMGIALGFISLGVLVGPPFGGILYE----------------FAGKSAPFLVLAIVLLLDGALQLLVIEPTE 251 (464)
T ss_pred cccchhhhHHHHHHHHHHhccceecCCcccchHh----------------hcCCcCcHHHHHHHHHHHHHHHHheeCccc
Confidence 9976 57999999999999999999999999999 566778889998888887666655544332
Q ss_pred CCCCCCCcccchhhhccccccchhhhcccCCCcccccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccc
Q 011424 242 RHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYS 321 (486)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 321 (486)
.++.. ..+....++++++|.++.........+.........+++|..+. +..+
T Consensus 252 ~~~~~----------------------~~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~-----m~~p 304 (464)
T KOG3764|consen 252 MDPDS----------------------TEQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLET-----MFTP 304 (464)
T ss_pred cCccc----------------------cccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHh-----ccCC
Confidence 22110 11234567889999887766655555555555556666666554 4533
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhh
Q 011424 322 TQMVGEVLAITGFSLLVFQLSLYPFLERILG--PIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVS 399 (486)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (486)
.-+.|+.+....+...++..+. +.+.||++ |......+.+.........+++.... ..+.......+.++.....
T Consensus 305 ~w~~G~~fLp~~~~y~ig~~lf-g~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~--~L~vp~~~l~~~i~~~das 381 (464)
T KOG3764|consen 305 GWEVGLAFLPASLSYAIGTNLF-GKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIA--QLWVPNFGLGFGIGLADAS 381 (464)
T ss_pred CcceeeeecccccchhccCchH-HHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHH--HHhhhhHHHHHHHHHHHHH
Confidence 4478888888889999998844 55555567 43334444444444444444444322 2233333333333334444
Q ss_pred hhhhhhhhhhhccccC---chhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHh
Q 011424 400 IITGLFILQNRAVDQD---QRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMT 476 (486)
Q Consensus 400 ~~~~~~~~~~~~~~~~---~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~ 476 (486)
..|.....+.. ...+ .-|.++++......+|.++||.++|.+.+.. |+.+.....++..++..-+.
T Consensus 382 l~P~l~~lvd~-rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~i----------GF~wl~~iig~~n~iyapvl 450 (464)
T KOG3764|consen 382 LIPTLGYLVDP-RHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAI----------GFEWLMTIIGILNLIYAPVL 450 (464)
T ss_pred HhhhhHHhcch-hhccccceeeeHHHHHHHHHHHhhhccccccchheeeh----------hHHHHHHHHHHHHHHHHHHH
Confidence 44544433332 2223 6789999999999999999999999999988 88888888888777765544
Q ss_pred h
Q 011424 477 F 477 (486)
Q Consensus 477 ~ 477 (486)
.
T Consensus 451 ~ 451 (464)
T KOG3764|consen 451 L 451 (464)
T ss_pred H
Confidence 3
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.1e-28 Score=228.16 Aligned_cols=347 Identities=15% Similarity=0.101 Sum_probs=244.6
Q ss_pred ccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHhccchHHHHHHH
Q 011424 62 PFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLT 141 (486)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~ 141 (486)
+.+-.+.+|.+....+ .+.+.+++.++++++.+++|.|.||++-.+.+....+++++..++.....|++.+++.
T Consensus 67 a~l~g~~edl~~~~~~------l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ial 140 (495)
T KOG2533|consen 67 ASLSGLKEDLKLVGNQ------LGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIAL 140 (495)
T ss_pred HHHcCCccccchhhhh------hhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3334456888888888 9999999999999999999999999999999999999999999888889999999999
Q ss_pred HHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccCCcccccccccccCCChhhHH
Q 011424 142 RFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCL 220 (486)
Q Consensus 142 r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~ 220 (486)
|++.|+.++..+|+ ..+++.|+.++||++.++++.+..++|.++|++++..+.+ .++.....|||+.| +
T Consensus 141 r~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~-~~~~~~~~gW~~~F---------i 210 (495)
T KOG2533|consen 141 RFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFK-LNGSGGLAGWRWLF---------I 210 (495)
T ss_pred HHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhh-hcCCCCcCCceeeh---------h
Confidence 99999999999997 9999999999999999999999999999999999999765 22333356666665 6
Q ss_pred HHHHHHHHH-HHHHHhcCCcccCCCCCCCccc-chhhhccccccchhhhcccCCCcccccccchhhHHHHHHHHHHHhhh
Q 011424 221 CISLFAFGV-TIAAFWLPETLHRHNDDDDSCD-VSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHD 298 (486)
Q Consensus 221 ~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (486)
+.+++.++. +++.+++|+.|.+.+-.+++++ ...++.++...+..+++ .+...+++.+++|.+|...+..++.....
T Consensus 211 I~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~dp~vw~~~l~~~~~~lv~ 289 (495)
T KOG2533|consen 211 IEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENK-FKWKGFKEALKDPGVWPFSLCYFFLKLVN 289 (495)
T ss_pred HHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCCCcccc-cCHHHHHHHHhchhHHHHHHHHHHHhhcc
Confidence 766666654 5667789998875432222221 11122222222222112 45567788999999999999999999999
Q ss_pred hhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHH-HHHHH
Q 011424 299 MAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI----LGPIMVARIAGVLTIPLL-TSYPY 373 (486)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~ 373 (486)
.++..+.|+|+.+. .|++..+++.+..+..++++++.+ +.+++.|| ..+|........+..... ..+..
T Consensus 290 ~~~~~~lpl~l~~~-----~~~s~~~a~~ls~~~~~~g~v~~i-~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 363 (495)
T KOG2533|consen 290 YGFSYWLPLYLKSN-----GGYSELQANLLSTPYDVGGIVGLI-LAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLA 363 (495)
T ss_pred ccHHHHHHHHHHcC-----CCcChHHhccccchHHhhhHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999998762 579999999999999999999988 66777777 344444333332222222 22211
Q ss_pred HHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCch-hhHHhHHHHHHHHHHHHHhh
Q 011424 374 IAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQR-GAANGIAMTGMSLFKAAGPA 437 (486)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~g~~~~~~~~g~~~~~~ 437 (486)
. .. .. ......+..........+......++....+.| -+..++.......+++++|.
T Consensus 364 ~-~~----~~-~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~ 422 (495)
T KOG2533|consen 364 A-AV----LP-GAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQ 422 (495)
T ss_pred h-cc----ch-HHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhh
Confidence 1 10 11 111222222223344445555566665544443 34444444445555555544
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-26 Score=224.21 Aligned_cols=405 Identities=12% Similarity=0.068 Sum_probs=260.0
Q ss_pred hHHHHHHHHHHHhhhhhhhhcccHHHHHHH---hcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhh-cCCchhhh
Q 011424 41 TELFSIWIIVLCTALPISSLFPFLYFMIKD---FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVII 116 (486)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr-~Grr~~l~ 116 (486)
+.++.+....+...++.+...+.+|.+.++ +|.+..+ .+++.+.+.++..++++++|+++|| +|||+++.
T Consensus 10 ~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~------ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~ 83 (475)
T TIGR00924 10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQ------AFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMV 83 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHH------HHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHH
Confidence 335667778888888888888888877654 8999988 9999999999999999999999999 89999999
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchh---hhhHhhHHHHHhhhhHHHHhhhhhh
Q 011424 117 MGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEH---QALGLSTVSTAWGIGLIIGPALGGF 192 (486)
Q Consensus 117 ~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~---r~~~~~~~~~~~~~g~~ig~~l~~~ 192 (486)
++.++.+++.++.+++++++.++++|++.|++.|...+. .++++|++|+++ |++++++++.+.++|..+||+++++
T Consensus 84 ~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~ 163 (475)
T TIGR00924 84 LGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGV 163 (475)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988775 899999998764 8889999999999999999999999
Q ss_pred hcccCccCCcccccccccccCCChhhHHHHHHHHHHHHHHHHhcCCcccCCCCCC---C-c-ccchhhhc----------
Q 011424 193 LAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDD---D-S-CDVSYDAL---------- 257 (486)
Q Consensus 193 l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~---~-~-~~~~~~~~---------- 257 (486)
+.+ .+|| +..+...++..++..+.....++..+..++++ + + .+......
T Consensus 164 l~~-------~~g~---------~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (475)
T TIGR00924 164 IAE-------NYGY---------HVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVF 227 (475)
T ss_pred HHH-------hcCh---------HHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHH
Confidence 987 3444 44445555444444333333332211111000 0 0 00000000
Q ss_pred ----cccccchh----------------hhcccCCCcccccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCc
Q 011424 258 ----ESASAEVK----------------EEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGG 317 (486)
Q Consensus 258 ----~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (486)
........ ....++.....+..|...+....+...++........+.++.+..+....+-
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~ 307 (475)
T TIGR00924 228 FCAWLMHHVVIANILLMTVTLAVIIFFFRLAFKPRLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEM 307 (475)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc
Confidence 00000000 0000000000111122223333333334444433444444555433211110
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHH---HHHh-hhhHHHH--HHHHHHHHHHHHHHHHHHhhh---hhhHHHHHHH
Q 011424 318 LNYSTQMVGEVLAITGFSLLVFQLSLYPF---LERI-LGPIMVA--RIAGVLTIPLLTSYPYIAMLS---GFGLAFLLNC 388 (486)
Q Consensus 318 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 388 (486)
.++ ....+.+.+...+..++.+++..++ +.|| .+.+... .++.++..++...+.+..... ......+.+.
T Consensus 308 ~~~-~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~ 386 (475)
T TIGR00924 308 LGM-SVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVL 386 (475)
T ss_pred cce-EECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHH
Confidence 111 1236778888888888877755543 2332 1122222 455666555555544321110 1123334556
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHH
Q 011424 389 ASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVV 468 (486)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~ 468 (486)
..++.+.+.....|...++..+..|++.||+.+|+......+|..+++.+.....+.. ++...|...++.
T Consensus 387 ~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~----------~~~~~~~~~~~~ 456 (475)
T TIGR00924 387 IYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQ----------GVTGVFGKIGLV 456 (475)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------chhhHHHHHHHH
Confidence 6677778888889999999999999999999999999999999999888877665443 566677777766
Q ss_pred HHHHHHHhhc
Q 011424 469 EAIGVLMTFK 478 (486)
Q Consensus 469 ~~~~~~~~~~ 478 (486)
+++..++.++
T Consensus 457 ~~~~~~~~~~ 466 (475)
T TIGR00924 457 TLLVGVVMAL 466 (475)
T ss_pred HHHHHHHHHH
Confidence 6666555544
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-25 Score=214.16 Aligned_cols=374 Identities=13% Similarity=0.041 Sum_probs=251.2
Q ss_pred HHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHH--HHHHHHHHHHhhhhhhh-hhhhcCCchhhhHHH
Q 011424 43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYV--GSSFMFGRALTSVFWGL-VADRYGRKPVIIMGT 119 (486)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~s~~~~~~~i~~~~~G~-l~dr~Grr~~l~~~~ 119 (486)
+..+...++.+++..+...|.+|.+.+|.|.+.++ +|++ .+...+...+.+|+++. ..||+||||..++.+
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~------iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~ 76 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTA------LAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPM 76 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHH
Confidence 45667778889999999999999999999999999 9997 46668888888888844 799999999976665
Q ss_pred HHH-HHHHHHHh---ccch-HHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhh
Q 011424 120 ASV-VIFNTLFG---LSVN-FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL 193 (486)
Q Consensus 120 ~~~-~~~~~~~~---~a~~-~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l 193 (486)
.+. ++.....+ ...+ ...++..-++.++..+...+. .++..|..++++++...+....+..+|.++|+...+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l 156 (390)
T TIGR02718 77 QCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVL 156 (390)
T ss_pred HHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 22222222 2222 333444445555566666665 77888988888889888888888899999999999899
Q ss_pred cccCccCCcccccccccccCCChhhHHHHHHHHHHHHHHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCCC
Q 011424 194 AQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREAT 273 (486)
Q Consensus 194 ~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (486)
.+ +.+|+.++.+.++..++..+..++++|+++.++++++ ++..
T Consensus 157 ~~----------------~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~ 199 (390)
T TIGR02718 157 FG----------------KFGQRPAFLLVACVPLASLVCVLWLKDRAVASPEAPL---------------------ARRA 199 (390)
T ss_pred HH----------------HhCHHHHHHHHHHHHHHHHHHHHHcCCCCcCccccch---------------------hhHH
Confidence 88 4455555577776666555444555443321111000 0112
Q ss_pred cccccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHH-HHHHHHHHHHHHhhh
Q 011424 274 PKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLL-VFQLSLYPFLERILG 352 (486)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 352 (486)
+.++.+|+|.++......++..........+.+.|+.+ .|+++++.|......+.... ++.. ..+++.||++
T Consensus 200 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~------~G~s~~~ig~~~~~~~~~~~~~g~~-~~g~l~~r~g 272 (390)
T TIGR02718 200 SLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVD------AGWPLEWIGRLGMAGGAVTVLLGCG-GGAWLVRRAG 272 (390)
T ss_pred HHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHh------cCCCHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHhh
Confidence 35677888888877777777666566666666655543 58999999999888775444 4455 6777888889
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccc-CchhhHHhHHHHHHHHH
Q 011424 353 PIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQ-DQRGAANGIAMTGMSLF 431 (486)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 431 (486)
+++.+..+..+............................+.++......+.......+..++ +.+++.+++.+...++|
T Consensus 273 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg 352 (390)
T TIGR02718 273 LWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLG 352 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHH
Confidence 98888776655433222221111110001111111222222223344445555555555665 88999999999999999
Q ss_pred HHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHh
Q 011424 432 KAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMT 476 (486)
Q Consensus 432 ~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~ 476 (486)
..++|.+.|.++|.. |+...|...+++.+++.+..
T Consensus 353 ~~~g~~~~G~l~~~~----------G~~~~f~~~~~~~l~a~~~~ 387 (390)
T TIGR02718 353 ELIASSIAGYLTDRF----------GYAGGFLSGTVLAVLAILLA 387 (390)
T ss_pred HHHHHHHHHHHHHHH----------ccHHHHHHHHHHHHHHHHHh
Confidence 999999999999988 78889988888777766554
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.8e-26 Score=201.72 Aligned_cols=381 Identities=17% Similarity=0.191 Sum_probs=286.5
Q ss_pred hHHHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHH
Q 011424 41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA 120 (486)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~ 120 (486)
..+..+....++.++......+.+|.+.+.|+++..| .+++..+++.++.+.+++.|++.+|+|+|+.++.++.
T Consensus 13 ~~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~------a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~ 86 (422)
T COG0738 13 LAFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFE------ASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLL 86 (422)
T ss_pred eHHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHH------HHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHH
Confidence 3455666677788888899999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh---ccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhccc
Q 011424 121 SVVIFNTLFG---LSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP 196 (486)
Q Consensus 121 ~~~~~~~~~~---~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~ 196 (486)
++++++.+.. -..+|..++++-++.|.|.+...++ ..+++...++++-.+.+++.+...++|.+++|++++.+...
T Consensus 87 l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils 166 (422)
T COG0738 87 LYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILS 166 (422)
T ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 9999999885 4568999999999999999998886 99999999999999999999999999999999999999862
Q ss_pred Cc----cCCcccccccccccCCChhhHHHHHHHHHHHHHHHHh--cCCcccCCCCCCCcccchhhhccccccchhhhccc
Q 011424 197 AE----KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFW--LPETLHRHNDDDDSCDVSYDALESASAEVKEEEGR 270 (486)
Q Consensus 197 ~~----~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (486)
.. +-+....|+... ...++.++...+...++..+.... .|+.++..+++. ++
T Consensus 167 ~~~~~~~~~~~~~~~~~~-~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~~~---------------------~~ 224 (422)
T COG0738 167 GVALTMSAAQILAIKGAD-ASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSLG---------------------AS 224 (422)
T ss_pred hhhhccCHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHhccCCcCCccccccc---------------------cc
Confidence 10 000011122211 223455555554444433333322 233222111110 01
Q ss_pred CCCcccccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011424 271 EATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI 350 (486)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (486)
......+++++|.++...+..+++.........+++.|+.++ .|.+..++....+....+.++|+++. -++-+|
T Consensus 225 ~~~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~-----~g~~~~~aa~~~s~~~~~~~vGRFig-~~lm~~ 298 (422)
T COG0738 225 GSAGLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEEL-----LGLNEQQAAYYLSFFWVGFMVGRFIG-SALMSR 298 (422)
T ss_pred ccchHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc-----CCccHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 111467889999999999999999999999999999998876 58899999999999999999999844 444457
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHH
Q 011424 351 LGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSL 430 (486)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 430 (486)
+...+.+.....+..+.++...+... .+.+....+.+.+....+|..++...+..| ++...+.+ ......+
T Consensus 299 ~~~~k~Laf~a~~~ill~~~~~l~~g-------~v~~~~l~~ig~F~simfPTIfslal~~l~-~~ts~~s~-~l~maiv 369 (422)
T COG0738 299 IKPEKYLAFYALIAILLLLAVALIGG-------VVALYALFLIGLFNSIMFPTIFSLALKNLG-EHTSVGSG-LLVMAIV 369 (422)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHhcC-------hHHHHHHHHHHHHhHHHHHHHHHHHHhccC-ccccccce-eeeehee
Confidence 78888887777666666665555443 123334445567888899999999999888 44444444 3456788
Q ss_pred HHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHH
Q 011424 431 FKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVL 474 (486)
Q Consensus 431 g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~ 474 (486)
|+++.|.+.|++.|.. |....+.....+|.+-.+
T Consensus 370 GGAiiP~l~G~i~d~~----------g~~~~~~~~pllc~lyV~ 403 (422)
T COG0738 370 GGAIIPPLQGVIADMF----------GIQLTFLIVPLLCYLYVL 403 (422)
T ss_pred cchHHHHHHHHHHHhh----------hhHHHHHHHHHHHHHHHH
Confidence 9999999999999998 555555544444444443
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-26 Score=217.24 Aligned_cols=332 Identities=11% Similarity=0.152 Sum_probs=232.6
Q ss_pred hhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhc-----CCchhh-hHHHHHHHHHHHHHh
Q 011424 57 ISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-----GRKPVI-IMGTASVVIFNTLFG 130 (486)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~-----Grr~~l-~~~~~~~~~~~~~~~ 130 (486)
.....+.+|.+.+|+|.|.++ .|+..+. .+...+ .+++|+++||+ ||||.+ +.+.++.++.....+
T Consensus 4 ~~~~~~~~~~~~~~~g~s~~~------~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~ 75 (356)
T TIGR00901 4 LGLVGNTLPYWLRSKNVSLKT------IGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILS 75 (356)
T ss_pred chhHHhHHHHHHHHcCCCHHH------HHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 456778899999999999999 9998765 555555 99999999998 899974 667777777777777
Q ss_pred cc---chHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccCCccccc
Q 011424 131 LS---VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSS 206 (486)
Q Consensus 131 ~a---~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~~~~gw 206 (486)
+. .+.+.+....++.+++.+...+. .+++.|++|+|+|+++.++...+..+|.++++.+++.+.+ .+|.
T Consensus 76 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~-------~~g~ 148 (356)
T TIGR00901 76 FLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLAS-------PEFA 148 (356)
T ss_pred cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhh-------hccc
Confidence 76 46667777788888877777776 9999999999999999999999999999999999999887 3442
Q ss_pred ccccccCCChhhHHHHHHHHHHHHHHHHh-cCCcccCCCCCCCcccchhhhccccccchhhhcccCCCcccccccchh--
Q 011424 207 ESLFGKFPYFLPCLCISLFAFGVTIAAFW-LPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWP-- 283 (486)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 283 (486)
... .+++||.++.+.++..++..+..++ .||+.+..+.+ + + . +++.....++++++|.
T Consensus 149 ~~~-~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~~-~--~-~--------------~~~~~~~~~~~~~~~~~~ 209 (356)
T TIGR00901 149 NTG-LITLWGYIFFWTALLILPGLLVTLFLAKEPQEDASVP-K--P-L--------------TQAVLKPIREFFQRKNMI 209 (356)
T ss_pred ccc-cccccHHHHHHHHHHHHHHHHHHHHhccCCCcccccc-h--h-H--------------HHHHHHHHHHHHHhcCch
Confidence 222 2566888888888776665554443 56643211100 0 0 0 0001113445666664
Q ss_pred -hHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHH-HHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 011424 284 -LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGF-SLLVFQLSLYPFLERILGPIMVARIAG 361 (486)
Q Consensus 284 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (486)
++...+..++..........+.+.|..+ .|+++.+.+......+. ..+++.+ .++++.||+++|+.+..+.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~g~~~~~~g~~~~~~~~~~~~~g~~-~~g~l~~r~g~~~~l~~~~ 282 (356)
T TIGR00901 210 QALLLLLLIVLYKLGDSAATVLTTLFLLD------MGFSKEEIALVAKINGLLGAILGGL-IGGIIMQPLNILYALLLFG 282 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHhHHHHHHHHHHHHH-HHHHHHhhhhHHHHHHHHH
Confidence 5555555555555555666677776643 58899999988877664 5566665 6777888889888877777
Q ss_pred HHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHH
Q 011424 362 VLTIPLLTSYPYIAMLSG-----FGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMS 429 (486)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 429 (486)
.+..+....+.+...... ...........++.++......+...++..|.+|+++||+.+|+.+...+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 283 IVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 666655554443321110 01112233334445566677888899999999999999999999887654
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=237.54 Aligned_cols=389 Identities=16% Similarity=0.148 Sum_probs=272.3
Q ss_pred HHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHH
Q 011424 45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI 124 (486)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~ 124 (486)
...+..+...+..+...+.++.+.++|+++..+ .|++.+.+.++++++.++.|+++||+|||+.+.++.+++++
T Consensus 37 ~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~------~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~l 110 (633)
T TIGR00805 37 LLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSS------SGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGL 110 (633)
T ss_pred HHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCc------ceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHH
Confidence 344456666677788889999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHhccc---------------------------------------------------hHHHHHHHHHHHHhhccchh
Q 011424 125 FNTLFGLSV---------------------------------------------------NFWMAVLTRFLLGSLNGLLG 153 (486)
Q Consensus 125 ~~~~~~~a~---------------------------------------------------~~~~l~~~r~l~G~~~g~~~ 153 (486)
+++++++.+ .+..++++|+++|+|.+...
T Consensus 111 g~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~ 190 (633)
T TIGR00805 111 GSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIF 190 (633)
T ss_pred HHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcch
Confidence 999988752 25678899999999999988
Q ss_pred hH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccCCcccccccc-----------c-ccCCChhhHH
Q 011424 154 PI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESL-----------F-GKFPYFLPCL 220 (486)
Q Consensus 154 ~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~~~~gw~~~-----------~-~~~~~~~~~~ 220 (486)
+. .+++.|++|+++|++++++++.+..+|..+|+++++++.+... +|+.. + |..+||..++
T Consensus 191 ~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~------d~~~~~~~~~~l~~~dprWiGaWwl~Fl 264 (633)
T TIGR00805 191 PLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYV------DTGSVNTEDVILTPTDPRWIGAWWIGFL 264 (633)
T ss_pred hcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhccc------ccccCCCCCCCCCCCCccHHHHHHHHHH
Confidence 86 9999999999999999999999999999999999999987321 23211 1 0224888888
Q ss_pred HHHHHHHHHHHHHHhcCCcccCCCCCCCcccchhhhccccccch-h---hhcccCCCcccccccchhhHHHHHHHHHHHh
Q 011424 221 CISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEV-K---EEEGREATPKKSLLKNWPLMSSIIVYCVFSL 296 (486)
Q Consensus 221 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (486)
+.+++.++..+.++++|++.+....+.+.+....+..++..++. . +..++.....+.+++||.++...+..++...
T Consensus 265 i~g~l~~l~~v~l~~~p~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~ 344 (633)
T TIGR00805 265 ICGGVALLTSIPFFFFPKALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSL 344 (633)
T ss_pred HHHHHHHHHHHHHHhCccccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 88877777666666777654432111100000000000000000 0 0001112345678999999999998888888
Q ss_pred hhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHH-HHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHH
Q 011424 297 HDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGF-SLLVFQLSLYPFLERILG--PIMVARIAGVLTIPLLTSYPY 373 (486)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 373 (486)
...++..+.|.|+... +|+++.+++++.....+ +.+++.+ +++++.||++ .++.+..+..+..+..+....
T Consensus 345 ~~~~~~~~lP~yl~~~-----~g~s~~~ag~l~~~~~i~~~~vG~~-l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (633)
T TIGR00805 345 AFNGYITFLPKYLENQ-----YGISSAEANFLIGVVNLPAAGLGYL-IGGFIMKKFKLNVKKAAYFAICLSTLSYLLCSP 418 (633)
T ss_pred HHHHHHHHHHHHHHHH-----cCCcHHHHHHHhhhhhhhHHHHHHh-hhhheeeeecccHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888999888765 79999999999887776 4456666 6666777666 456666665555554333210
Q ss_pred ---H-----------------------Hh---------hh----------------------------------------
Q 011424 374 ---I-----------------------AM---------LS---------------------------------------- 378 (486)
Q Consensus 374 ---~-----------------------~~---------~~---------------------------------------- 378 (486)
. .. ..
T Consensus 419 ~~~~~C~~~~~agv~~~y~~~~~~~~~~~~Cn~~C~C~~~~~~PVCg~~~~tY~SpC~AGC~~~~~~~~~~~y~~CsCi~ 498 (633)
T TIGR00805 419 LFLIGCESAPVAGVNNPSTDQSIYVENPTDCNRQCSCDSSFFDPVCGDNGLAYLSPCHAGCSMSVGTGSNMVYTNCSCVQ 498 (633)
T ss_pred HHeecCCCCccceeeccCCCcccCCCChhccCCCCCCCCCCcccccCCCCCEEECccccCCCCccCCCCcceeccccccc
Confidence 0 00 00
Q ss_pred ---------hh------hHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHH-HHHHHHHHhhhHHHH
Q 011424 379 ---------GF------GLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTG-MSLFKAAGPAGGGAL 442 (486)
Q Consensus 379 ---------~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~-~~~g~~~~~~~~g~l 442 (486)
+. .....+++..++..+...........+.-+.+|+++|+.+.|+...+ +-+|.+-+|.++|++
T Consensus 499 ~~~~~~a~~g~C~~~C~~~~~~f~~~~~~~~~~~~~~~~p~~~i~lR~V~~~~rs~alg~~~~~~rllg~iP~pi~fG~~ 578 (633)
T TIGR00805 499 TPGNSSAKKGLCNPPCATSLLYFLILFIPLSFIAFITAVPLYMVLLRVVNPEEKSLAIGLQWLCMRVFATIPAPILFGLL 578 (633)
T ss_pred CCCCCCCcCCCCCcccchhHHHHHHHHHHHHHHHHhccCchheEEeeccCcccchHHhhHHHHHHHHhcCCChhHHHhhh
Confidence 00 00112222222222233333334445566779999999999999876 467889999999999
Q ss_pred HHHHhhhcC
Q 011424 443 FSWAQKRLD 451 (486)
Q Consensus 443 ~~~~~~~~~ 451 (486)
.|...-.+.
T Consensus 579 iD~sC~~W~ 587 (633)
T TIGR00805 579 IDVSCLHWQ 587 (633)
T ss_pred hhchhheec
Confidence 998765443
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-32 Score=268.45 Aligned_cols=411 Identities=18% Similarity=0.231 Sum_probs=271.0
Q ss_pred HHHHHHhhhhhhhhcccHHHHH--HHhcccccchh---hhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHH
Q 011424 47 WIIVLCTALPISSLFPFLYFMI--KDFQIAKREED---IGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS 121 (486)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~ 121 (486)
.++.+..+++....+...+... .++..+..+.. ...+.+++.+...+|..+|++++|.++||+|||++++++.++
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~ 85 (451)
T PF00083_consen 6 SLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALL 85 (451)
T ss_pred HHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhcccccccccccccccccccccccccc
Confidence 3445777777777766665444 33333332211 234478999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccc---hHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccC
Q 011424 122 VVIFNTLFGLSV---NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA 197 (486)
Q Consensus 122 ~~~~~~~~~~a~---~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~ 197 (486)
..++.++.++++ |++.+.++|+++|++.|...+. ..++.|..|+++|++..++.+....+|..++..++..+.+
T Consensus 86 ~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~-- 163 (451)
T PF00083_consen 86 MIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSY-- 163 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--
Confidence 999999999999 9999999999999999887775 9999999999999999999999999999998888765533
Q ss_pred ccCCcccccccccccCCChhhHHHHHHHHHHHHHHHHhcCCcccCCCCCCCcccch--hhhcccccc---chhh------
Q 011424 198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVS--YDALESASA---EVKE------ 266 (486)
Q Consensus 198 ~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~------ 266 (486)
..+ .+.||..+....+++++.++...++||+|++...+++.+++. .++.++... +.++
T Consensus 164 -----~~~------~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~ 232 (451)
T PF00083_consen 164 -----YSD------NWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKK 232 (451)
T ss_pred -----ccc------cccccccccccccccccccccccccccccceecccccccccccccccccccccccccccccccccc
Confidence 111 234566667777777777777789999999865444333221 122111100 0000
Q ss_pred hcccCCCcccccccchhh-HHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHH
Q 011424 267 EEGREATPKKSLLKNWPL-MSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYP 345 (486)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (486)
+.++....++++++++.. +.......+..............|. +...++.+.+.. -.......+...++.+ .+.
T Consensus 233 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~--~~i~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~ 307 (451)
T PF00083_consen 233 ESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYS--PSIFENAGISNS--FLATLILGLVNFLGTL-LAI 307 (451)
T ss_pred cccccceeeeeccccccccccccccccccccccccccccccccc--cccccccccccc--cccccccccccccccc-ccc
Confidence 011111346677777542 2222222222222111111111221 223333555555 1222233344445544 445
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHH--HHHhhhhh--hHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHH
Q 011424 346 FLERILGPIMVARIAGVLTIPLLTSYP--YIAMLSGF--GLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAAN 421 (486)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 421 (486)
.+.||+|||+....+.....++...+. ........ ..........+....+..+..+..+.+..|.+|++.|+++.
T Consensus 308 ~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~ 387 (451)
T PF00083_consen 308 FLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGI 387 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccceeeeecccccccccccccccccccccccccccccc
Confidence 777888999998888777776666554 11111110 11112222222233444566777888999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhccccccCCC
Q 011424 422 GIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQRHD 486 (486)
Q Consensus 422 g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 486 (486)
|+....++++++++|.+...+.+.. +....+.+.++++++..++.++ ++||+++
T Consensus 388 ~~~~~~~~i~~~i~~~~~~~~~~~~----------~~~~~~~i~~~~~~i~~i~~~~-~lpET~g 441 (451)
T PF00083_consen 388 GLSYAVGRIGGFIIPFLFPYLFNNL----------GGWGVFLIFAGVCLIAIIFVYF-FLPETKG 441 (451)
T ss_pred ccccccccccccccccccccccccc----------cccccchhhHHHHHHHHhheeE-EEeeCCC
Confidence 9999999999999999988887766 3345667777777777777777 7999874
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-26 Score=221.97 Aligned_cols=399 Identities=16% Similarity=0.154 Sum_probs=283.4
Q ss_pred cCCCChhHHHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchh
Q 011424 35 KSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPV 114 (486)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~ 114 (486)
+..+.|...+..++..+...-....++.+.+.++++++.+.++ .+|+.++......+..|+.+.+.||+|.|++
T Consensus 40 dGG~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~------~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v 113 (509)
T KOG2504|consen 40 DGGWGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQ------IAWIGSLLLGVYLLAGPLVSALCNRFGCRTV 113 (509)
T ss_pred CCCeeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccH------HHHHHHHHHHHHHHhccHHHHHHhhcCchHH
Confidence 4445555555555555555555566678889999999999999 9999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhccchHHHHHHHH-HHHHhhccchhh-HHHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhh
Q 011424 115 IIMGTASVVIFNTLFGLSVNFWMAVLTR-FLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGF 192 (486)
Q Consensus 115 l~~~~~~~~~~~~~~~~a~~~~~l~~~r-~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~ 192 (486)
.+.|.++..++.++.++++++|++++.- ++.|+|.|+... +...+..+++ ++|+.+.|+...+.++|.++-|.+...
T Consensus 114 ~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~ 192 (509)
T KOG2504|consen 114 MIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKY 192 (509)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHH
Confidence 9999999999999999999999988877 778999888655 5777776665 679999999999999999999999999
Q ss_pred hcccCccCCcccccccccccCCChhhHHHHHHHHHHHHHHHHhcCC-cccCCCC--------------CC-----Ccccc
Q 011424 193 LAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPE-TLHRHND--------------DD-----DSCDV 252 (486)
Q Consensus 193 l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~~~~~~~--------------~~-----~~~~~ 252 (486)
+.+ .+||| ......+.+.+-.+.....+++ +++..+. .. +..+.
T Consensus 193 l~~-------~~G~r---------~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (509)
T KOG2504|consen 193 LLS-------KYGWR---------GALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISER 256 (509)
T ss_pred HHH-------HhCcH---------HHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccC
Confidence 998 45554 4445555554444443333333 2221110 00 00000
Q ss_pred hhhhcc-------cccc-chhhhcccCCC-c---ccccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCcccc
Q 011424 253 SYDALE-------SASA-EVKEEEGREAT-P---KKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNY 320 (486)
Q Consensus 253 ~~~~~~-------~~~~-~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 320 (486)
.....+ ...+ +.+.+....+. . ..++++++.++...+...+..........+++.|..+ .++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~------~g~ 330 (509)
T KOG2504|consen 257 DSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKS------LGL 330 (509)
T ss_pred CCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh------cCC
Confidence 000000 0000 00000001111 1 2578899998888888877777766666666666553 699
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhh
Q 011424 321 STQMVGEVLAITGFSLLVFQLSLYPFLERILG--PIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSV 398 (486)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (486)
+..+++.+.++.++..+++++ +.+++.|+.. ++....++.+...+.....++... +..+...+++.+++.+
T Consensus 331 ~~~~aa~l~Siigi~~i~gRi-~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~------~~~l~~~~~~fG~~~g 403 (509)
T KOG2504|consen 331 SSNDAAFLLSIIGVSDIIGRI-ILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATT------YVGLIVFSILFGFCVG 403 (509)
T ss_pred ChhhhHHHHHHHHHhhhhhhh-hhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhcc------HHHHHHHHHHHHHHHH
Confidence 999999999999999999999 6666766645 334444444444444434433322 2244455555666666
Q ss_pred hhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhc
Q 011424 399 SIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK 478 (486)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~ 478 (486)
........+..+.++.++-..+.|+...+..++..+||.+.|.+.|..+ .|...|++++++.+++....+.
T Consensus 404 ~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg---------~Y~~~f~~~g~~~~~s~~~~~~ 474 (509)
T KOG2504|consen 404 SFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITG---------NYDHAFYFCGLCFLLSAVLLLI 474 (509)
T ss_pred HHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccC---------CeeeehhhcChHHHHHHHHHHH
Confidence 6666677788999999999999999999999999999999999999883 4788888888888887765544
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.4e-26 Score=220.31 Aligned_cols=409 Identities=14% Similarity=0.047 Sum_probs=248.9
Q ss_pred hHHHHHHHHHHHhhhhhhhhcccHH-HHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhh-cCCchhhhHH
Q 011424 41 TELFSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVIIMG 118 (486)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr-~Grr~~l~~~ 118 (486)
+.++.+....+...+..+...+.++ ++.+++|.++++ .+++.+.+.....+..+++|+++|| +||||+++++
T Consensus 14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~------a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g 87 (489)
T PRK10207 14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQ------AFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLG 87 (489)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHH
Confidence 5566777777778888777776665 557789999988 8999999998888889999999999 9999999999
Q ss_pred HHHHHHHHHHHhccchHHH-HHHHHHHHHhhccchhhH-HHHHhhhccch--hhhhHhhHHHHHhhhhHHHHhhhhhhhc
Q 011424 119 TASVVIFNTLFGLSVNFWM-AVLTRFLLGSLNGLLGPI-KAYACEIFREE--HQALGLSTVSTAWGIGLIIGPALGGFLA 194 (486)
Q Consensus 119 ~~~~~~~~~~~~~a~~~~~-l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~ig~~l~~~l~ 194 (486)
.+++.+++++++++++... ++++|+++|+|.|...|. .+++.|.+|++ +|++++++++.+.++|..+||.+++++.
T Consensus 88 ~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~ 167 (489)
T PRK10207 88 AIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIA 167 (489)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999876444 558999999999998875 99999999877 4578999999999999999999999999
Q ss_pred ccCccCCcccccccccccCCChhhHHHHHHHHHHHHHHHHhcCCcccCCC--C-C--CCcccchh------------hhc
Q 011424 195 QPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHN--D-D--DDSCDVSY------------DAL 257 (486)
Q Consensus 195 ~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~--~-~--~~~~~~~~------------~~~ 257 (486)
+ ++|||+.| .+..+..+..++.+...++..+..+ . + .|...... ...
T Consensus 168 ~-------~~gw~~~F---------~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~ 231 (489)
T PRK10207 168 D-------KFGYSVTY---------NLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWL 231 (489)
T ss_pred H-------hhChHHHH---------HHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 8 55555444 4543333333333333332221111 0 0 11111000 000
Q ss_pred cccccchh--------------hhcccCCCcccccccchhhHHHHHH--HHHHHhhhhhhhHHHHHhhcCccccCccccc
Q 011424 258 ESASAEVK--------------EEEGREATPKKSLLKNWPLMSSIIV--YCVFSLHDMAYSEIFSLWANSPKKLGGLNYS 321 (486)
Q Consensus 258 ~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 321 (486)
.+...... ..++. ...+.+|+|.+....+. ..+...........++.+..+.......|+.
T Consensus 232 ~~~~~~~~~~~~~~~~i~~~~f~~~~~---~~~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~ 308 (489)
T PRK10207 232 MHNVEVANLVLIVLSIVVTIIFFREAF---KLDKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFS 308 (489)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceE
Confidence 00000000 00000 11145566654433322 2222222233334455555432222222333
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH-------HHHHHHHHHHHHHHHHHH----HHhhhhhhHHHHHHHHH
Q 011424 322 TQMVGEVLAITGFSLLVFQLSLYPFLERILGPIM-------VARIAGVLTIPLLTSYPY----IAMLSGFGLAFLLNCAS 390 (486)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 390 (486)
.. ...+.+...+..++.+++.+ .+.+|.++|+ .+.++..+..++.+.+.. ...........+.+...
T Consensus 309 i~-~~~~~~~n~~~iii~~pl~~-~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~ 386 (489)
T PRK10207 309 IN-PVSFQALNPFWVVVASPILA-GIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVY 386 (489)
T ss_pred EC-HHHHHhHhHHHHHHHHHHHH-HHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHH
Confidence 22 23344444555656666444 4555666664 345565555555443321 11111112223344556
Q ss_pred HHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHH
Q 011424 391 VVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEA 470 (486)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~ 470 (486)
++.+.+.....+.....+.+..|++.+|.++|+.+....+|+.++..+.+.........++....+.+...|...++..+
T Consensus 387 ~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 466 (489)
T PRK10207 387 LFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTL 466 (489)
T ss_pred HHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHH
Confidence 66777778888888888889999999999999999999999999887776442110000000001135566666666665
Q ss_pred HHHHHh
Q 011424 471 IGVLMT 476 (486)
Q Consensus 471 ~~~~~~ 476 (486)
++.++.
T Consensus 467 ~~~v~~ 472 (489)
T PRK10207 467 GVAVVM 472 (489)
T ss_pred HHHHHH
Confidence 554444
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-24 Score=189.31 Aligned_cols=353 Identities=16% Similarity=0.106 Sum_probs=276.6
Q ss_pred hhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHhccchH
Q 011424 56 PISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF 135 (486)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~ 135 (486)
....+.|+++.+.+|+|.|.+. .|+++++..+...+.+++..+++.|+|.++.+..++++.+++.++-... +.
T Consensus 27 ~itsvgPLL~~Ir~~~gls~s~------aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~ 99 (395)
T COG2807 27 AITSVGPLLDEIRQDLGLSFSV------AGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GL 99 (395)
T ss_pred hhhhhhhhHHHHHHHhcccHHH------HHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cH
Confidence 5678899999999999999999 9999999999999999999999999999999999999999999998887 78
Q ss_pred HHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccCCccc-ccccccccC
Q 011424 136 WMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLF-SSESLFGKF 213 (486)
Q Consensus 136 ~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~~~~-gw~~~~~~~ 213 (486)
+.++.+-.+.|.+.+...+. +.++-+.+|+ +-+..+|++.+..++|..+++.+...+.+ +. |||
T Consensus 100 ~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk-~~~~mtglYs~sl~~~aaLaa~lavpla~-------~~~gW~------ 165 (395)
T COG2807 100 PLLFLGTLLAGAGIAVINVLLPSLIKRDFPK-RVGLMTGLYSTSLGAGAALAAALAVPLAQ-------HSGGWR------ 165 (395)
T ss_pred HHHHHHHHHHHhhHHHHHHhhhHHHHhhccc-chhhHHhHHHHHHHHHHHHHhhhhhHHHH-------hhccHH------
Confidence 88999999999999999886 9999999986 48999999999999999999999999988 22 444
Q ss_pred CChhhHHHHHHHHHHHHHHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCCCcccccccchhhHHHHHHHHH
Q 011424 214 PYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCV 293 (486)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (486)
.....-+++++++++.+ +|...+....+ .+.+..+...++|||.-|...+.+.+
T Consensus 166 ---~aL~~WAl~allAl~~W--lPq~~r~~~~~---------------------~~~~~~~~~~vw~~~~aW~vtLfmGl 219 (395)
T COG2807 166 ---GALGFWALLALLALLIW--LPQALREQAAS---------------------IATKLVSVRKVWRSPLAWQVTLFMGL 219 (395)
T ss_pred ---HHHHHHHHHHHHHHHHH--hhhcccccccc---------------------cccccccccccccCchhHHHHHHHHh
Confidence 43345555555555444 44432111110 11122234568999999999999999
Q ss_pred HHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHH
Q 011424 294 FSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLER-ILGPIMVARIAGVLTIPLLTSYP 372 (486)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 372 (486)
.+...+....|+|.++.+ .|+|+.++|.+.+...+..++.++ ..+.+.+ +.++|+.......+..++...+.
T Consensus 220 qS~~~Y~~~~WLP~ili~------~G~sa~~aG~llsl~~l~~~~~~l-l~P~la~R~~n~r~~~~~~~~~~l~G~~G~~ 292 (395)
T COG2807 220 QSLLYYIVIGWLPAILID------RGLSAAEAGSLLSLMQLAQLPTAL-LIPLLARRSKNQRPLVVLALLLMLVGLVGLL 292 (395)
T ss_pred hHHHHHHHHHHHHHHHHH------cCCCHHHhhhHHHHHHHHHHHHHH-HHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 999999999999988876 499999999999999999999998 5565555 44566666666666666666665
Q ss_pred HHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhh-ccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhcC
Q 011424 373 YIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNR-AVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLD 451 (486)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 451 (486)
+.+.. ..+.+ .++.+...++.++.....+.. ..+++..+.-.|+.+.++++-++.||.++|++.|.+
T Consensus 293 ~~P~~---~~~lw----~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~----- 360 (395)
T COG2807 293 LAPGQ---LPILW----ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDAT----- 360 (395)
T ss_pred Hhhhh---HHHHH----HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhc-----
Confidence 44321 12222 244455666666765555544 445677888999999999999999999999999998
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHhhc
Q 011424 452 ASFLPGSQMVFFVLNVVEAIGVLMTFK 478 (486)
Q Consensus 452 ~~~~~g~~~~f~~~~~~~~~~~~~~~~ 478 (486)
++|...+...+.+.++..+.-+.
T Consensus 361 ----gsw~~~~~~l~~~~i~m~i~Gl~ 383 (395)
T COG2807 361 ----GSWSAPLVLLALATLLMLIFGLR 383 (395)
T ss_pred ----CChHHHHHHHHHHHHHHHHHHhh
Confidence 36888888877777777666555
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.3e-25 Score=209.99 Aligned_cols=360 Identities=14% Similarity=0.146 Sum_probs=235.4
Q ss_pred hhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHhcc
Q 011424 53 TALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS 132 (486)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a 132 (486)
.++........++.+..|+|-++. ..|+.+.+.++.++..++.|+++|.||||.+++.+.++..+++++++.+
T Consensus 56 ~~~~~~~~a~~l~~I~~diG~~~~-------~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA 128 (599)
T PF06609_consen 56 AYFVLVLPASILPYINADIGGSDN-------WSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA 128 (599)
T ss_pred HHHHHhccHHHHHHHHHhcCCCcc-------chHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC
Confidence 344555556778899999998765 6999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhhccchhhHHHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccCCccccccccccc
Q 011424 133 VNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGK 212 (486)
Q Consensus 133 ~~~~~l~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~~~~gw~~~~~~ 212 (486)
+|...++++..+.|+|.|........++|..|.|.|....++..........++|.++..+.. .-+|||.|
T Consensus 129 ~~~~~~iag~~l~GvgaG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~-------~~~WRw~~-- 199 (599)
T PF06609_consen 129 QNMNTFIAGMVLYGVGAGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAA-------HSGWRWIF-- 199 (599)
T ss_pred CcHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhcc-------CCCcchHH--
Confidence 999999999999999988777667678999999999988877776666666677777776665 34555444
Q ss_pred CCChhhHHHHHHHHHHHHH--HHHhcCCcccCCCCCCCcccchhhhcc-------------------------ccccchh
Q 011424 213 FPYFLPCLCISLFAFGVTI--AAFWLPETLHRHNDDDDSCDVSYDALE-------------------------SASAEVK 265 (486)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~ 265 (486)
++..+...+.++ .++..|++++..+.++..++...++++ ..+++.+
T Consensus 200 -------~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~ 272 (599)
T PF06609_consen 200 -------YIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAH 272 (599)
T ss_pred -------HHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcc
Confidence 344443333322 223334332221111111111111111 1111111
Q ss_pred ------------------hh--cccCCCcccccccch-hhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCcccccc--
Q 011424 266 ------------------EE--EGREATPKKSLLKNW-PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYST-- 322 (486)
Q Consensus 266 ------------------~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-- 322 (486)
|. ..+++.-..+++|++ .+...+++.++.....++...++|...... ++-++
T Consensus 273 VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~v-----f~~d~~~ 347 (599)
T PF06609_consen 273 VIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNV-----FGSDPIS 347 (599)
T ss_pred chhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----ccCCCcc
Confidence 11 223555667888874 455555566666655666656666655443 23333
Q ss_pred -chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhh
Q 011424 323 -QMVGEVLAITGFSLLVFQLSLYPFLERILGPIM-VARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSI 400 (486)
Q Consensus 323 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (486)
...++...+.+.+..++..+. +.+.++.++.| .+..+..+..+++.++........ ... ....++.+++.+..
T Consensus 348 ~~~~~~~s~~~~fg~~~g~~i~-g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~-~~~---i~~~~l~g~giG~~ 422 (599)
T PF06609_consen 348 ITEIGWISSPVGFGSCAGAVIL-GLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNK-NAA---IAFLVLAGFGIGGI 422 (599)
T ss_pred cceeehhhhhHHHHHHHHHHHH-HHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCc-chH---HHHHHHHHHhHHHH
Confidence 356777778888888887744 44445445544 444555555544454444332222 111 12223333344444
Q ss_pred hhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHH
Q 011424 401 ITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSW 445 (486)
Q Consensus 401 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 445 (486)
........+-..|++..|++.|+..+++.+|+.+|..+...++..
T Consensus 423 ~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~n 467 (599)
T PF06609_consen 423 LVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFTN 467 (599)
T ss_pred HHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 445556666678999999999999999999999999998877753
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.4e-25 Score=217.25 Aligned_cols=368 Identities=15% Similarity=0.120 Sum_probs=245.3
Q ss_pred HHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHh
Q 011424 68 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGS 147 (486)
Q Consensus 68 ~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~ 147 (486)
.+.+..+... ..+..+++.+|..+|++++|+++||+|||++++.++++..++.++.++++|++.+++.|+++|+
T Consensus 110 ~~~~c~~~~~------~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~ 183 (521)
T KOG0255|consen 110 WNLVCDSSTL------VALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGF 183 (521)
T ss_pred hceeeCcHhH------HHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence 3455556655 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccCCcccccccccccCCChhhHHHHHHHH
Q 011424 148 LNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFA 226 (486)
Q Consensus 148 ~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~ 226 (486)
+.+..... ..++.|++++++|+.+..+ ......+..++++.++++.+ +||..+++..++.
T Consensus 184 ~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~------------------~Wr~~~~~~~~~~ 244 (521)
T KOG0255|consen 184 FGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR------------------DWRWLFWIISIPS 244 (521)
T ss_pred hccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh------------------hHHHHHHHHHHHH
Confidence 87766664 9999999999999999999 77778888888888888764 3555567777777
Q ss_pred HHHHHHHHhcCCcccCCCCCCCcccc--hhhhcccc----ccc------h-h-----hhcccCCCcccccccchhhHHHH
Q 011424 227 FGVTIAAFWLPETLHRHNDDDDSCDV--SYDALESA----SAE------V-K-----EEEGREATPKKSLLKNWPLMSSI 288 (486)
Q Consensus 227 ~~~~~~~~~~~e~~~~~~~~~~~~~~--~~~~~~~~----~~~------~-~-----~~~~~~~~~~~~~~~~~~~~~~~ 288 (486)
+..++..++.||++++...+++.++. .+++..+. ... . . ....++...+.++++.|++....
T Consensus 245 ~~~~~~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~ 324 (521)
T KOG0255|consen 245 GLFLLLWFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRT 324 (521)
T ss_pred HHHHHHHHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHH
Confidence 77766667777999986554443222 11221110 000 0 0 00111224467778887655444
Q ss_pred HHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 011424 289 IVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLL 368 (486)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (486)
+...+........ |........++|.+. .......+........ ......++.|||.....+..+..++.
T Consensus 325 ~~~~~~~~~~~~~------y~gl~~~~~~lg~~~---~~~~~~~~~~~~p~~~-~~~~~~~~~gR~~~~~~~~~~~~~~~ 394 (521)
T KOG0255|consen 325 LYLLFIWFVFSLV------YYGLSLNVSGLGGNI---YLNFTLSGLVELPAYF-RNGLLLPEFGRRPPLFLSLFLAGIGL 394 (521)
T ss_pred HHHHHHHHHHhHH------HHhhhhhhhhcCchH---HHHHHHHHHHHhhHHH-HHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 4433332211111 111111112233232 2233333334555544 44556666799999999998888888
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhh
Q 011424 369 TSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQK 448 (486)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~ 448 (486)
+...+....... +. ..+...+..++........+.+..|.+|+..|..+.+.......++.+++|.+.-......
T Consensus 395 ~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~-- 469 (521)
T KOG0255|consen 395 LLFGWLPDDLGG--WL-HWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMF-- 469 (521)
T ss_pred HHHHHhhccchh--HH-HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--
Confidence 888777654321 11 1222222333334444555889999999999999999999999999999999876554422
Q ss_pred hcCCCCCCchhHHHHHHHHHHHHHHHHhhccccccCC
Q 011424 449 RLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQRH 485 (486)
Q Consensus 449 ~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 485 (486)
....+..++....+..++... .+||++
T Consensus 470 ---------~~~~~~~~~~~~~l~~~~~~~-~lpet~ 496 (521)
T KOG0255|consen 470 ---------PLLGLILFGWLALLLGLLSLL-LLPETK 496 (521)
T ss_pred ---------ccchHHHHHHHHHHHHHHHHh-cCcccC
Confidence 222323345555555555534 477765
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=9e-25 Score=212.14 Aligned_cols=349 Identities=16% Similarity=0.134 Sum_probs=234.9
Q ss_pred hhhhhhhcccH-HHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhh----cCCch-hhhHHHHHHHHHHH
Q 011424 54 ALPISSLFPFL-YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR----YGRKP-VIIMGTASVVIFNT 127 (486)
Q Consensus 54 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr----~Grr~-~l~~~~~~~~~~~~ 127 (486)
.+......+.+ +.+.+++|+++.+ .|++.++..+..++..|+.|+++|| +|||| .++.+....+++.+
T Consensus 12 ~~~~~~~~~~l~~~~~~~~g~s~~~------~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~ 85 (437)
T TIGR00792 12 NFIFAIVSTYLLFFYTDVLGLSAAF------VGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLV 85 (437)
T ss_pred HHHHHHHHHHHHHHHHHccCCCHHH------HHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHH
Confidence 33344444444 5667789999999 9999999999999999999999997 67755 56678888888888
Q ss_pred HHhccch------HHHHHHHHHHHHhhccchhh-HHHHHhhhc-cchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCcc
Q 011424 128 LFGLSVN------FWMAVLTRFLLGSLNGLLGP-IKAYACEIF-REEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK 199 (486)
Q Consensus 128 ~~~~a~~------~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~ 199 (486)
++...++ ...+++.+++.+++.+...+ ..++..|.. +++||++..++.+.+..+|..+++.+.+.+..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~---- 161 (437)
T TIGR00792 86 LLFTTPDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVS---- 161 (437)
T ss_pred HHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 7776653 46677788888888776555 488888887 57899999999999999998888877766664
Q ss_pred CCcccccccccccCCChhhHHHHHHHHHHHHH-HHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCCCccccc
Q 011424 200 YPNLFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSL 278 (486)
Q Consensus 200 ~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (486)
.++.. ....+|+..+.+.+++.++..+ ..+..||+++..+.++++ +.+.....+++
T Consensus 162 ---~~~~~--~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~~------------------~~~~~~~~~~l 218 (437)
T TIGR00792 162 ---YFGGG--DDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNIEK------------------KLSLKQIFKAL 218 (437)
T ss_pred ---HhCCC--cccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCccccc------------------CCCHHHHHHHH
Confidence 11110 0034567666666666555443 345566654221110000 00111235667
Q ss_pred ccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 011424 279 LKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVAR 358 (486)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (486)
++||+++...+..++............+.|.... .+ ++...+.+.....++.+++.+ ..+++.||+++|+...
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~i~~ii~~~-~~~~l~~r~g~~~~~~ 291 (437)
T TIGR00792 219 FKNDQLLILCLAYLFYNLAFNIKNGVQVYYFTYV-----LG-DPELFSYMGSIAIVAGLIGVL-LFPRLVKKFGRKILFA 291 (437)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHcchhheeEeee-----cC-ChHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCcHHHHH
Confidence 8899988777766666555444433333333221 23 455666677777788888877 5667778889999888
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccc-------cCchhhHHhHHHHHHHHH
Q 011424 359 IAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVD-------QDQRGAANGIAMTGMSLF 431 (486)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~~g 431 (486)
.+..+..++...+.+.. . ..+ ...+..++.+++.....+..+++.+|..| ++.+|++.|+.+....+|
T Consensus 292 ~~~~~~~~~~~~~~~~~--~--~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g 366 (437)
T TIGR00792 292 GGILLMVLGYLIFFFAG--S--NLP-LILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLG 366 (437)
T ss_pred HHHHHHHHHHHHHHHcc--h--hHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHH
Confidence 88776666555544322 1 111 22233334444555556667777777654 566899999999999999
Q ss_pred HHHHhhhHHHHHHHHh
Q 011424 432 KAAGPAGGGALFSWAQ 447 (486)
Q Consensus 432 ~~~~~~~~g~l~~~~~ 447 (486)
..+++.+.|.+.+..+
T Consensus 367 ~~lg~~i~g~ll~~~G 382 (437)
T TIGR00792 367 QALAGFLVGLILGIIG 382 (437)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 9999999999998764
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.9e-23 Score=191.58 Aligned_cols=390 Identities=17% Similarity=0.229 Sum_probs=270.1
Q ss_pred HHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcC-CchhhhHHHHHHH
Q 011424 45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG-RKPVIIMGTASVV 123 (486)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~G-rr~~l~~~~~~~~ 123 (486)
.+....++..+..+...|.++.+.++.|.|..| +|.+.++..+...++++++|.++||++ +||.+.+..++.+
T Consensus 6 rLs~~~f~~f~~~G~~~p~~~~~L~~~G~s~~q------IG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~ 79 (400)
T PF03825_consen 6 RLSLMYFLYFFAYGAFLPYLPLYLESRGFSGTQ------IGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSA 79 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHH
Confidence 345566777778888899999999999999999 999999999999999999999999986 5778878888888
Q ss_pred HHHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhh-hhhhcccCccCC
Q 011424 124 IFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPAL-GGFLAQPAEKYP 201 (486)
Q Consensus 124 ~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l-~~~l~~~~~~~~ 201 (486)
+........++++.+++.-++..+......|. .++..+... ++++-.|-.....++|.+++... ++.+..
T Consensus 80 ~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~------ 151 (400)
T PF03825_consen 80 LALLLLAFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGG------ 151 (400)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHh------
Confidence 77777778889999888888888876666665 666666654 34555666666677777666543 222322
Q ss_pred cccccccccccCCChhhHHHHHHHHHHHHHHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCCCcccccccc
Q 011424 202 NLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKN 281 (486)
Q Consensus 202 ~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (486)
..++. .....+.+.+...++.....+.+|+.|++++.+++. +++...+..+++|+
T Consensus 152 -~~~~~------~~~~~~~i~~~~~~ll~~~~l~lp~~~~~~~~~~~~------------------~~~~~~~~~~llk~ 206 (400)
T PF03825_consen 152 -YLGIS------GTSLIFYIAAILSLLLAGFALFLPKTPPKRSAKESV------------------KKLLGLDALKLLKN 206 (400)
T ss_pred -hhccc------cccHHHHHHHHHHHHHHHHHHhCCCCccccccCCCc------------------ccccchHHHHHhcC
Confidence 11111 111222333333333444455678776332222111 11112234578999
Q ss_pred hhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccc-cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 011424 282 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLN-YSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIA 360 (486)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (486)
|++...++..++.......+.++.+.|+.+. | .+....+...+...+..++.-. ..+++-+|+|.++++.++
T Consensus 207 ~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~------gg~~~~~~g~~~~l~~~aEi~~f~-~~~~~~~r~g~~~ll~~a 279 (400)
T PF03825_consen 207 PRFLVFLLAAFLIGISHAAYYTFFSIYLQEL------GGYSGSTIGILWALGVVAEIPFFF-FSGRFLKRFGIKWLLLLA 279 (400)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------ccchhhHHHHHHHHHHHHHHHHHH-HHHHHHHhcCHHHHHHHH
Confidence 9999888888888888888888888887654 5 6777788888777777877755 667777778999999988
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHH-HHHHHHHHhhhH
Q 011424 361 GVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTG-MSLFKAAGPAGG 439 (486)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~-~~~g~~~~~~~~ 439 (486)
.....+=..++.....+. ............+.+............++.+.+|++.|++++++++.. ..+|..+|..+.
T Consensus 280 ~~~~~vR~~l~a~~~~~~-~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~ig 358 (400)
T PF03825_consen 280 LVAYAVRWLLYAYFSDPW-PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIG 358 (400)
T ss_pred HHHHHHHHHHHHHhcCCc-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHH
Confidence 888777777766542211 011111222233455566667778888999999999999999999876 579999999999
Q ss_pred HHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhccccccCCC
Q 011424 440 GALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQRHD 486 (486)
Q Consensus 440 g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 486 (486)
|+++|..+.... ..+...+.+.+++.++..++... ..||+++
T Consensus 359 G~l~~~~g~~~~----~~~~~~~~v~a~~~~~~~~~f~~-~fk~~~~ 400 (400)
T PF03825_consen 359 GWLYDAFGARGM----FDWSAVFLVFAVMALVILVLFVI-LFKPKHN 400 (400)
T ss_pred HHHHHHhcchhh----hhHHHHHHHHHHHHHHHHHHHHh-hccCCCC
Confidence 999998733211 13555667777766666666665 4566553
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-22 Score=191.04 Aligned_cols=414 Identities=16% Similarity=0.142 Sum_probs=268.2
Q ss_pred ChhHHHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhh----hcCCchh
Q 011424 39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD----RYGRKPV 114 (486)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~d----r~Grr~~ 114 (486)
+.++++.+....+...+......+.++.+.+++|.+..+ .+++..+..+...+.+|+.|+++| |+||||.
T Consensus 2 ~~~~li~~~~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~------~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp 75 (477)
T TIGR01301 2 PLRKLLRVASVAAGVQFGWALQLSLLTPYVQELGIPHAW------ASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRP 75 (477)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHH
Confidence 345677777777777888888999998899999999988 999999999999999999999999 5999999
Q ss_pred hhHH-HHHHHHHHHHHhccchHHH-----------------HHHHHHHHHhhccchh-hHHHHHhhhccchhh--hhHhh
Q 011424 115 IIMG-TASVVIFNTLFGLSVNFWM-----------------AVLTRFLLGSLNGLLG-PIKAYACEIFREEHQ--ALGLS 173 (486)
Q Consensus 115 l~~~-~~~~~~~~~~~~~a~~~~~-----------------l~~~r~l~G~~~g~~~-~~~~~i~~~~~~~~r--~~~~~ 173 (486)
++++ .+...++.++.+++++... ++++-.+..++..... |..++++|.+|+++| +.+.+
T Consensus 76 ~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~ 155 (477)
T TIGR01301 76 FIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANA 155 (477)
T ss_pred HHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHH
Confidence 8875 6666677677777766532 2222223333555444 459999999998865 57999
Q ss_pred HHHHHhhhhHHHHhhhhhhhcccCccCCccccccc-----ccccCCChhhHHHHHHHHHHHH-HHHHhcCCcccCCCCCC
Q 011424 174 TVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSES-----LFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDD 247 (486)
Q Consensus 174 ~~~~~~~~g~~ig~~l~~~l~~~~~~~~~~~gw~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~ 247 (486)
+.+...++|.++|+.++++..... .+++.. .. ..+.+..|.+.++..++.. +..+..+|.+...+++.
T Consensus 156 ~~~~~~~lG~ilg~~~g~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~ 229 (477)
T TIGR01301 156 YFSFFMAIGNVLGYAAGAYSGLYK-----IFPFTKTEACGVS-CANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDF 229 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHH-----hcccccccccccc-cchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccc
Confidence 999999999999999998752100 111110 00 2356777777766666544 44566788764322111
Q ss_pred CcccchhhhccccccchhhhcccCCCccccccc-----chhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCcccccc
Q 011424 248 DSCDVSYDALESASAEVKEEEGREATPKKSLLK-----NWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYST 322 (486)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 322 (486)
+++ +.++.. +.+....++++++ .+.++..++..++..+..+.+..+...|..+.....+-+-+.
T Consensus 230 ~~~-----~~~~~~------~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~ 298 (477)
T TIGR01301 230 INS-----EAAPPS------KHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGA 298 (477)
T ss_pred hhh-----hccccc------ccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchh
Confidence 000 000000 0000112233332 255677777777766666655544444433221111000000
Q ss_pred --ch----hHHHHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHHhhhh---------------h
Q 011424 323 --QM----VGEVLAITGFSLLVFQLSLYPFLERILGP-IMVARIAGVLTIPLLTSYPYIAMLSG---------------F 380 (486)
Q Consensus 323 --~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~ 380 (486)
++ ..+.....++...+.++ ....+.|++|+ |+....+..+..+++....+.....+ .
T Consensus 299 ~y~~gvr~G~~~l~~~s~~~~i~s~-~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~ 377 (477)
T TIGR01301 299 KYDDGVRAGAFGLMLNSVVLGITSI-GMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPT 377 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcch
Confidence 11 12333444455556665 55667788874 66667787777777777766553111 0
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccc--CchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCCCCCch
Q 011424 381 GLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQ--DQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGS 458 (486)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~ 458 (486)
......++.....|+.........++++++..++ +..|..+|+.|....+.+.+.....|.+.+..++ +.
T Consensus 378 ~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~--------~~ 449 (477)
T TIGR01301 378 GIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGG--------GN 449 (477)
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCC--------CC
Confidence 0013344555566677777888889999998884 5669999999999999999999999986666532 34
Q ss_pred hHHHHHHHHHHHHHHHHhhccccccCC
Q 011424 459 QMVFFVLNVVEAIGVLMTFKPFLAQRH 485 (486)
Q Consensus 459 ~~~f~~~~~~~~~~~~~~~~~~~~~~~ 485 (486)
..++.+.++..+++.++.++ .+|+.+
T Consensus 450 ~~~~~~~gv~~~~aa~~~~~-~~~~~~ 475 (477)
T TIGR01301 450 LPAFVVGAVAAFVSGLLALI-LLPRPR 475 (477)
T ss_pred eeHHHHHHHHHHHHHHHHHH-hCCCCC
Confidence 56888888888888888887 677654
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-22 Score=198.79 Aligned_cols=405 Identities=14% Similarity=0.075 Sum_probs=232.3
Q ss_pred HHHHHHHHHHHhhhhhhhhcccHHH-HHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhh-cCCchhhhHHH
Q 011424 42 ELFSIWIIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVIIMGT 119 (486)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr-~Grr~~l~~~~ 119 (486)
.++.++...+...+..+...+.++. +.+++|.++.+ .+++.+.+........+++|+++|| +|||++++++.
T Consensus 22 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~------a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~ 95 (500)
T PRK09584 22 AFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEAD------SITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGA 95 (500)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3566667777777777777777664 45889999988 7888887776666667899999999 59999999999
Q ss_pred HHHHHHHHHHhccc-hHHHHHHHHHHHHhhccchhhH-HHHHhhhccchh--hhhHhhHHHHHhhhhHHHHhhhhhhhcc
Q 011424 120 ASVVIFNTLFGLSV-NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEH--QALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (486)
Q Consensus 120 ~~~~~~~~~~~~a~-~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~ig~~l~~~l~~ 195 (486)
++.+++..++++++ +.+.++++|+++|++.|...+. .+++.|++|+++ |..++++++.+.++|..+||.+++++.+
T Consensus 96 ~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~ 175 (500)
T PRK09584 96 IVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAA 175 (500)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998874 5677888999999999987775 889999998643 5568899999999999999999999998
Q ss_pred cCccCCcccccccccccCCChhhHHHHHHHHHHHH----HHHHhcCCcccCCCCC-CCcccchh-----------hh-cc
Q 011424 196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT----IAAFWLPETLHRHNDD-DDSCDVSY-----------DA-LE 258 (486)
Q Consensus 196 ~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~e~~~~~~~~-~~~~~~~~-----------~~-~~ 258 (486)
.+|||+.| .+.++..++.+ .....++|..+..+.+ .+..+... .. ..
T Consensus 176 -------~~g~~~~F---------~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (500)
T PRK09584 176 -------KYGWSVAF---------ALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLL 239 (500)
T ss_pred -------hhCHHHHH---------HHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 45555444 45443322222 2223344432111111 11111000 00 00
Q ss_pred ccccchh-----------hhcccCCCcccccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcC----ccccCccccccc
Q 011424 259 SASAEVK-----------EEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANS----PKKLGGLNYSTQ 323 (486)
Q Consensus 259 ~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~g~~~~ 323 (486)
...+... ..........++.-+ ++.+..+... +............+.++.. .......|+. .
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~-i 316 (500)
T PRK09584 240 HNQEIARMALGVVALGIVVIFGKEAFAMKGAAR-RKMIVAFILM-LEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIA-V 316 (500)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHhhcCHHHH-HHHHHHHHHH-HHHHHHHHHHHHhccHHHHHHHHhccccccceE-E
Confidence 0000000 000000000011112 2222222211 1111112222222222111 0000001211 2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH---HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhh---hhhHHHHHHHHHHHHhhhh
Q 011424 324 MVGEVLAITGFSLLVFQLSLYP---FLERILGPIMVARIAGVLTIPLLTSYPYIAMLS---GFGLAFLLNCASVVKNLLS 397 (486)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 397 (486)
..+.+.+...+..++..++... ++.+|.+..+...++..+..++...+....... +..+..+.+...++.+.+.
T Consensus 317 ~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge 396 (500)
T PRK09584 317 EPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGE 396 (500)
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHH
Confidence 2455566666666666553332 223333445666777777777776665543311 1111224556667777888
Q ss_pred hhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhc---CC-CCCCchhHHHHHHHHHHHHHH
Q 011424 398 VSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRL---DA-SFLPGSQMVFFVLNVVEAIGV 473 (486)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~---~~-~~~~g~~~~f~~~~~~~~~~~ 473 (486)
....|....++.+..|++.||+.+|+......+|..++ |.+.+...... .+ ....++...|...++++++..
T Consensus 397 ~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a 472 (500)
T PRK09584 397 LMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIA----GYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIA 472 (500)
T ss_pred HHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999997665555555544 44443221100 00 001136677877776665444
Q ss_pred HH
Q 011424 474 LM 475 (486)
Q Consensus 474 ~~ 475 (486)
++
T Consensus 473 ~~ 474 (500)
T PRK09584 473 VL 474 (500)
T ss_pred HH
Confidence 33
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-22 Score=187.81 Aligned_cols=352 Identities=13% Similarity=0.045 Sum_probs=215.2
Q ss_pred hhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHhccchHH
Q 011424 57 ISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFW 136 (486)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~ 136 (486)
+.......|.+.+|+|++++|. .|.+.++++.++++++++.|+++||+|.|+++.++.+.+++.+++.++++++.
T Consensus 42 R~n~s~a~p~L~~elglT~~qv-----~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~ 116 (511)
T TIGR00806 42 RPGESFITPYLLTVLNFTEETV-----TNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVW 116 (511)
T ss_pred hchHHHHHHHHHHHcCCCHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666789999999998762 68999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccchhhHHHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccCCcccccccccccCCCh
Q 011424 137 MAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYF 216 (486)
Q Consensus 137 ~l~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~ 216 (486)
.+.+.|++.|++.|.......++..|+|+++|+++.++..++..+|.++++++++++. .+|||+..
T Consensus 117 ~L~i~R~llGvaEA~~~A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~--------s~gWr~y~------ 182 (511)
T TIGR00806 117 HMQLMEVFYSVTMAARIAYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV--------TLGWISYS------ 182 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hcCchhHH------
Confidence 9999999999999998844999999999999999999999999999999999999944 46777533
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCcccCCC--CCCCcccchhhhccccccch---hh--hcc-------cCCCcccccccch
Q 011424 217 LPCLCISLFAFGVTIAAFWLPETLHRHN--DDDDSCDVSYDALESASAEV---KE--EEG-------REATPKKSLLKNW 282 (486)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~--~~~-------~~~~~~~~~~~~~ 282 (486)
....+....-.++++..+++|..++..- ++++..+....+.++...++ .. .+. .-..+.++..+|+
T Consensus 183 ~Ln~Isl~s~~~a~~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~ 262 (511)
T TIGR00806 183 TLNIISLVFMTFSVFLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNP 262 (511)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcCc
Confidence 4444554455556667778885443211 11000000000000000000 00 000 0112233445666
Q ss_pred hhHHHHHHHHHHHhhhhhhhHHHH-HhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 011424 283 PLMSSIIVYCVFSLHDMAYSEIFS-LWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG 361 (486)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (486)
.+..-.+-..+..+......++.. +|-... ..+ ....|.+-.+..+.+.+..+ ..+++..+..+...+.++.
T Consensus 263 ~vl~WSlWwa~a~~g~~qv~~Y~Q~LW~~v~-~~~-----~~yNG~veA~~tllga~~a~-~ag~~~~~w~~~~~l~l~v 335 (511)
T TIGR00806 263 QLLLWSLWWVFNSAGYYLITYYVHTLWGTLD-ESL-----NKYNGAVDAASTLLGAITSF-IAGFVNIRWARWSKLLIAV 335 (511)
T ss_pred chhhhhHHHHHHhhHHHHHHHHHHHHHHHcC-CCc-----cccCCHHHHHHHHHHHHHHH-HHHhhcCCchhhHHHHHHH
Confidence 654444444333333333322222 221111 001 11345555555555666666 4444433333333333332
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhh
Q 011424 362 VLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAG 438 (486)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~ 438 (486)
....-+.+ +.+.... ...| ...+..++.........+....-+++....+.-|...|+.+++.-+-..+-..+
T Consensus 336 ~s~~~~gl-l~~m~~t--~~Iw-~~Y~~yvlf~~~y~flitia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~i 408 (511)
T TIGR00806 336 VSAIQAGL-VFWMSQS--HDIW-VLYVTYVLFRGIYQFLVPIATFQIASSLSKELCALVFGINTFVATALKTIITAV 408 (511)
T ss_pred HHHHHHHH-hhhhhcc--cchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceEEEEecHHHHHHHHHHheEEE
Confidence 22222222 2222211 1222 333444444444455556666666666777888999999887776665554443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-22 Score=183.82 Aligned_cols=380 Identities=14% Similarity=0.155 Sum_probs=246.8
Q ss_pred hHHHHHHHHHHHhhhhhhhhcccHHHHHHH-hcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHH
Q 011424 41 TELFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT 119 (486)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~ 119 (486)
+..+......+...+..+...|..|...++ .|++.++ +|.+.++..+...+.+|+.|.++||.|.||-++..+
T Consensus 7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~------iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i 80 (412)
T PF01306_consen 7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTE------IGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFI 80 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH------HHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHH------HHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHH
Confidence 456677777788888899999999977765 8999999 999999999999999999999999999777665443
Q ss_pred HHHH--HHH-HHHhccc----hHH-HHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhh
Q 011424 120 ASVV--IFN-TLFGLSV----NFW-MAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG 190 (486)
Q Consensus 120 ~~~~--~~~-~~~~~a~----~~~-~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~ 190 (486)
.+.. .+. +...+.| |++ ..+++-+..|+......|+ -+++.++. ++.+.-.|-.....++|.+++..++
T Consensus 81 ~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~ 158 (412)
T PF01306_consen 81 AILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLA 158 (412)
T ss_dssp HHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHh
Confidence 3222 222 2223322 221 1222222233333333343 44544443 2345566777778899999999999
Q ss_pred hhhcccCccCCcccccccccccCCChhhHHHHHHHHHHHHHHHHhc-CCcccCCCCCCCcccchhhhccccccchhhhcc
Q 011424 191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL-PETLHRHNDDDDSCDVSYDALESASAEVKEEEG 269 (486)
Q Consensus 191 ~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (486)
|.+.+. . -...+++....+++..++.+.. |+.++..+..+.+..+. ++
T Consensus 159 G~L~~i----------------~-p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~~~~--------------~~ 207 (412)
T PF01306_consen 159 GILFNI----------------N-PNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALGAKK--------------DK 207 (412)
T ss_dssp HHHHHH----------------H-HHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSSS------------------
T ss_pred heeeee----------------C-ccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccccCC--------------CC
Confidence 998861 1 1223344444444444433333 33332221111100000 11
Q ss_pred cCCCcccccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011424 270 REATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLER 349 (486)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (486)
...++..+++|+|++|...+...........+.+.++.|....... .+.+....|++.+..-+..++.-. ..+++-+
T Consensus 208 ~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~--~~~g~~~~G~l~s~~v~~E~~~m~-~~p~li~ 284 (412)
T PF01306_consen 208 VSLKDVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQS--AGQGNQMYGYLWSVQVFLEALMMF-FSPWLIN 284 (412)
T ss_dssp --HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSS--HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred CcHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cccChhHHhHHHHHHHHHHHHHHH-HHHHHHH
Confidence 1122356789999999888877766666667766677776543222 356677889999888888888765 7888888
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHH-HHHH
Q 011424 350 ILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIA-MTGM 428 (486)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~ 428 (486)
|+|.|+.++++..+..+=....++.+... .+...-.+.+.-.........-++++.+|++..++...+. +...
T Consensus 285 rig~k~~Lllag~i~~iRi~~~~~~~~~~------~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~ 358 (412)
T PF01306_consen 285 RIGAKNLLLLAGVIMAIRIIGSGFATNPW------VISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAK 358 (412)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHHHT--SHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTH
T ss_pred hcChHhHHHHHHHHHHHHHHHHhhhcchH------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHH
Confidence 89999999999888877777766544322 3444444554444555566677888889999999999986 5678
Q ss_pred HHHHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhc
Q 011424 429 SLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK 478 (486)
Q Consensus 429 ~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~ 478 (486)
+++.++.+.+.|.++|.. |++.+|++.+++.++..++..+
T Consensus 359 ~~~~~i~s~~~G~lyd~~----------G~~~tylimg~iv~~~~li~~f 398 (412)
T PF01306_consen 359 QIGIIILSPLAGYLYDRI----------GFQHTYLIMGLIVLPFTLISAF 398 (412)
T ss_dssp HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHhhHhhc----------CcHHHHHHHHHHHHHHHHHhee
Confidence 999999999999999999 8888999999888887777766
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9e-21 Score=183.68 Aligned_cols=381 Identities=10% Similarity=0.043 Sum_probs=239.0
Q ss_pred hhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHhcc-----
Q 011424 58 SSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS----- 132 (486)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a----- 132 (486)
+.++...|.+.+++|.+..+ .+++.++. .....++++.|+++||+|||+++.++.+++.++.++++++
T Consensus 44 y~fsv~s~~L~~~lgls~~~------l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i 116 (591)
T PTZ00207 44 YAFNLISGAMQARYNLTQRD------LSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVI 116 (591)
T ss_pred HHHHHHHHHHHHHhCcCHHH------HHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 45556678899999999998 88888774 4456778889999999999999999999999999999987
Q ss_pred -chHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHH-HhhhhhhhcccCccCCcccccccc
Q 011424 133 -VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLII-GPALGGFLAQPAEKYPNLFSSESL 209 (486)
Q Consensus 133 -~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i-g~~l~~~l~~~~~~~~~~~gw~~~ 209 (486)
++++.+++.|++.|+|.+...+. ...+.+++| ++||++.|+...+.++|.++ +++..+++.+ +|+
T Consensus 117 ~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~---------~~~-- 184 (591)
T PTZ00207 117 EGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSD---------NTS-- 184 (591)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hHH--
Confidence 68999999999999998887775 778899986 68999999999999999976 4444444432 122
Q ss_pred cccCCChhhHHHHHHHHHH-HHHHHHhcCCcc--cCC--CCCCCcccch-----------------h-------------
Q 011424 210 FGKFPYFLPCLCISLFAFG-VTIAAFWLPETL--HRH--NDDDDSCDVS-----------------Y------------- 254 (486)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~--~~~--~~~~~~~~~~-----------------~------------- 254 (486)
..++..++..++ .++...++++.+ .+. +.+.++++.. .
T Consensus 185 -------~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~ 257 (591)
T PTZ00207 185 -------AYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIV 257 (591)
T ss_pred -------HHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHH
Confidence 222333333333 333333443332 221 1111111111 0
Q ss_pred --------h----------------hc----------------c----c-cccc-h------------hhh-------c-
Q 011424 255 --------D----------------AL----------------E----S-ASAE-V------------KEE-------E- 268 (486)
Q Consensus 255 --------~----------------~~----------------~----~-~~~~-~------------~~~-------~- 268 (486)
+ .. + + +.+. . ++. +
T Consensus 258 yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (591)
T PTZ00207 258 FLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDY 337 (591)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccC
Confidence 0 00 0 0 0000 0 000 0
Q ss_pred --ccCCCcccccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCcc-ccccch--hHHHHHHHHHHHHHHHHHH
Q 011424 269 --GREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGL-NYSTQM--VGEVLAITGFSLLVFQLSL 343 (486)
Q Consensus 269 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~--~~~~~~~~~~~~~~~~~~~ 343 (486)
.+...++++.+++..+|.+...+++..........-..+.... + |.+.+. ...+.+..++++.+|++ .
T Consensus 338 ~~P~~~~t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~s------l~g~~~~~~~~~~~vsL~si~~~~GRl-~ 410 (591)
T PTZ00207 338 IAPQFQETFIEGLKTARLWCLLWSIFCCVGAHFVIIFNARFIYTA------LAGEAPDDALNTLLTVLNGVGSAVGRL-C 410 (591)
T ss_pred CCCCCcchHHHHHhchhHHHHHHHHHHhhCchheeeecHHHHHHH------hcCCCCCccceeeehhhhhHHHHhhHH-H
Confidence 0011145566677888988888888766555443333322221 3 442222 22267778888888888 5
Q ss_pred HHHHHHhhhhH--------HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccC
Q 011424 344 YPFLERILGPI--------MVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQD 415 (486)
Q Consensus 344 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (486)
.+..+....+| +.......++.+..+++.+.. . ...+.+..++.+++.+...+.....++|++. +
T Consensus 411 ~g~~~~~~~~~~~~~r~prt~~l~~~~~~~~~~lll~~~~-p-----~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k 483 (591)
T PTZ00207 411 MSYFEIWSQKRRAEDRVPITIALFIPSVCIITMLTLFLTL-P-----KAALPLPYFIAAFANGFMAATIALVTRTIFA-K 483 (591)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHC-C-----ccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-c
Confidence 56665222222 222222222222222222221 1 1245566667777888888889999999999 9
Q ss_pred chhhHHhHHHHHHHHHHHHH-hhhHHHHHHHHhhhcCCCC---CCchhHHHHHHHHHHHHHHHHhhc
Q 011424 416 QRGAANGIAMTGMSLFKAAG-PAGGGALFSWAQKRLDASF---LPGSQMVFFVLNVVEAIGVLMTFK 478 (486)
Q Consensus 416 ~~g~~~g~~~~~~~~g~~~~-~~~~g~l~~~~~~~~~~~~---~~g~~~~f~~~~~~~~~~~~~~~~ 478 (486)
+-|+-+-+.....-+|..+- -.+.|.++|.-...++... ..=+..+|++.+++++++.+....
T Consensus 484 ~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~ 550 (591)
T PTZ00207 484 DPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTY 550 (591)
T ss_pred chHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhh
Confidence 99998888888888887776 6788999987754432110 012678999999998888877654
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-21 Score=189.27 Aligned_cols=374 Identities=12% Similarity=0.029 Sum_probs=235.7
Q ss_pred hHHHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcC-----Cchhh
Q 011424 41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG-----RKPVI 115 (486)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~G-----rr~~l 115 (486)
..+..+...++..++......+..|.+.+++|+++++ ++...+...+.+.+-.+ +|+++||++ ||+.+
T Consensus 26 ~~~~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~------i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l 98 (468)
T TIGR00788 26 VVLAIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGAR------YQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYL 98 (468)
T ss_pred hHHHHHHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHH
Confidence 3455666677888888334445556677789999999 99999999999988666 999999998 77777
Q ss_pred hHHHHHHH-HHHHHHhccchHHHHH-HHHHHHHhhccchhhH-HHHHhhhccchhhhhHhh---HHHHHhhhhHHHHhhh
Q 011424 116 IMGTASVV-IFNTLFGLSVNFWMAV-LTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLS---TVSTAWGIGLIIGPAL 189 (486)
Q Consensus 116 ~~~~~~~~-~~~~~~~~a~~~~~l~-~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~---~~~~~~~~g~~ig~~l 189 (486)
+++.++.+ +.....+..++..... +..++.+++.+...++ -++..|..+ |++....+ ......++|.++|+.+
T Consensus 99 ~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l 177 (468)
T TIGR00788 99 VLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLL 177 (468)
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHH
Confidence 88777663 4433444445544444 4788999998888776 999999998 55544333 3334445899999999
Q ss_pred hhhhcccCccCCcccccccccccCCChhhHHHHHHHHHHHHHHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcc
Q 011424 190 GGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEG 269 (486)
Q Consensus 190 ~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (486)
+|.+.+ .++| +..+.+.+...++..+...++||+++....+.++++.. ..........+..+
T Consensus 178 ~G~l~~-------~~~~---------~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 239 (468)
T TIGR00788 178 GGPLLD-------KTLT---------RILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEM--NMALLTLGVLANVK 239 (468)
T ss_pred HHHHHH-------hcCc---------chHHHHHHHHHHHHHHHHHhcccccccccccccccchh--hhhhhhhhHHHHHH
Confidence 999998 4444 44446666655555555677888642111111000000 00000000000001
Q ss_pred cCCCcccccccchhhHHHHHHHHH-HHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011424 270 REATPKKSLLKNWPLMSSIIVYCV-FSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLE 348 (486)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (486)
+.....++.+++|.++...+..++ +...... ..+.++. .....|+++.+.|......+++.+++.....++ .
T Consensus 240 ~~~~~l~~~l~~~~i~~~l~fifl~~~~~~~~---~~~~f~~---~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~-~ 312 (468)
T TIGR00788 240 VQILGLRGAIQLLEIAKPLIFIFLSYANLPGA---SGSVFCA---TTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRF-L 312 (468)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHhhcCCC---CceeEEE---EcccCCCCcchhhhHHHHHHHHHHHHHHHHHHH-H
Confidence 111234445777887775555444 2211111 1111111 113479999999999999999999998855555 4
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHH
Q 011424 349 RILGPIMVARIAGVLTIPLLTSYPYIAMLSG----FGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIA 424 (486)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 424 (486)
+|++.|+.+.++..+..++............ ............+..............++.+..|++.+|+.+++.
T Consensus 313 ~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~ 392 (468)
T TIGR00788 313 KTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALL 392 (468)
T ss_pred hhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHH
Confidence 6778888888877776665543321110000 011112222223333344445555678888999999999999999
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHh
Q 011424 425 MTGMSLFKAAGPAGGGALFSWAQ 447 (486)
Q Consensus 425 ~~~~~~g~~~~~~~~g~l~~~~~ 447 (486)
+++.++|..+++.++|.+.+..+
T Consensus 393 ~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 393 ASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999998874
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.6e-20 Score=175.41 Aligned_cols=403 Identities=14% Similarity=0.073 Sum_probs=230.7
Q ss_pred hHHHHHHHHHHHhhhhhhhhcccHHHH-HHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhc-CCchhhhHH
Q 011424 41 TELFSIWIIVLCTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-GRKPVIIMG 118 (486)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~-Grr~~l~~~ 118 (486)
+.+..++...+...+..+.....+|.+ .+++|.++.+ .+.+.+.+.....++.+++|+++||+ ||||+++++
T Consensus 9 ~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~------a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG 82 (493)
T PRK15462 9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNH------AYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLG 82 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 446666667777777777777777755 5668999998 99999999999999999999999999 999999999
Q ss_pred HHHHHHHHHHHhccc-hHHHHHHHHHHHHhhccchhhH-HHHHhhhccch--hhhhHhhHHHHHhhhhHHHHhhhhhhhc
Q 011424 119 TASVVIFNTLFGLSV-NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREE--HQALGLSTVSTAWGIGLIIGPALGGFLA 194 (486)
Q Consensus 119 ~~~~~~~~~~~~~a~-~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~ig~~l~~~l~ 194 (486)
.++..++.++.+..+ +...+.++..+.+++.|...+. .++++|.+|++ +|..++++.+...++|..++|.+.+++.
T Consensus 83 ~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~ 162 (493)
T PRK15462 83 ALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQ 162 (493)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHH
Confidence 999999987776543 2233444444555666776664 88999999875 7999999999999999999999999998
Q ss_pred ccCccCCcccccccccccCCChhhHHHHHHHHHHHHHHHHhc----CCcccCCCCCCCcccchh---------h----hc
Q 011424 195 QPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL----PETLHRHNDDDDSCDVSY---------D----AL 257 (486)
Q Consensus 195 ~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~e~~~~~~~~~~~~~~~~---------~----~~ 257 (486)
+ .+||+ ..+...++..++.++..... ++.....+.+.++++... . ..
T Consensus 163 ~-------~~Gw~---------~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (493)
T PRK15462 163 E-------EYSWA---------MGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPAL 226 (493)
T ss_pred h-------hhChH---------HHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHH
Confidence 8 44544 44455443333333332222 121110011110000000 0 00
Q ss_pred ccc--ccchhh---------------hcccCCCcccccccchhhHHHHHH---HHHHHhhhhhhhHHHHHhhcCccccCc
Q 011424 258 ESA--SAEVKE---------------EEGREATPKKSLLKNWPLMSSIIV---YCVFSLHDMAYSEIFSLWANSPKKLGG 317 (486)
Q Consensus 258 ~~~--~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (486)
... .++... .....+.+..+ | ++++...+. ..++........+.+..|..+....+-
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e--r-~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~ 303 (493)
T PRK15462 227 ITVLFWKEWSVYALIVATIIGLGVLAKIYRKAENQKQ--R-KELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDM 303 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH--H-hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchh
Confidence 000 000000 00000000000 1 122222222 222222222222233344433221111
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhh------HHHHHHHHHHHHHHHHHHHHHHhhh---hhhHHHHHHH
Q 011424 318 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGP------IMVARIAGVLTIPLLTSYPYIAMLS---GFGLAFLLNC 388 (486)
Q Consensus 318 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 388 (486)
+|++ ....+..+.+.+..++.+++......++.++ ..-..++..+..++.+.+.+..... ...+..+++.
T Consensus 304 ~g~~-ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~ 382 (493)
T PRK15462 304 FGYT-VPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVL 382 (493)
T ss_pred ccee-eCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHH
Confidence 3333 2355666777777777766555544443111 1124566666666666554433221 1123444566
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCC------CCCchhHHH
Q 011424 389 ASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDAS------FLPGSQMVF 462 (486)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~------~~~g~~~~f 462 (486)
..++.+.+.....|...+.++++.|++.+|..+|+..... .++++.+.|.+.+......... ....+...|
T Consensus 383 ~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f 459 (493)
T PRK15462 383 GLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLS---GAIANYLAGVIADQTSQASFDASGAINYSINAYIEVF 459 (493)
T ss_pred HHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhccccCCccccccchhhhHHHHH
Confidence 6677788888899999999999999999999999984422 2344445555544432110000 011355667
Q ss_pred HHHHHHHHHH
Q 011424 463 FVLNVVEAIG 472 (486)
Q Consensus 463 ~~~~~~~~~~ 472 (486)
...+...++.
T Consensus 460 ~~~~~~~~~~ 469 (493)
T PRK15462 460 DQITWGALAC 469 (493)
T ss_pred HHHHHHHHHH
Confidence 6666655544
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-23 Score=174.95 Aligned_cols=386 Identities=15% Similarity=0.116 Sum_probs=246.5
Q ss_pred HHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhh-cCCchhhhHHHHHHH
Q 011424 45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVIIMGTASVV 123 (486)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr-~Grr~~l~~~~~~~~ 123 (486)
.+++..|..++.......+..++.+|.+++.++ ..++.+.|.....+..+++|++.|| +|-|..-++-+....
T Consensus 48 ~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~ak------ftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~ 121 (459)
T KOG4686|consen 48 FMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAK------FTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVF 121 (459)
T ss_pred HHHHhcccceeecCCchhhhhhhhcccccceee------eeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHH
Confidence 444444555556666666677788888888888 8999999999999999999999996 688877777777777
Q ss_pred HHHHHHhc---cchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCcc
Q 011424 124 IFNTLFGL---SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK 199 (486)
Q Consensus 124 ~~~~~~~~---a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~ 199 (486)
++.++++. .+.+|.+.++|++.|+|.-...++ .++..-|+..||.+.++|+.....-+|..+--.+.+++.+..+.
T Consensus 122 ~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~ 201 (459)
T KOG4686|consen 122 LGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGR 201 (459)
T ss_pred HHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHH
Confidence 78777765 689999999999999986666666 89999999999999999999999999998877777777762211
Q ss_pred CCcccccccccccCCChhhHHHHHHHHHHHHHHHHhc--CCcccCCCCCCCcccchhhhccccccchhhhcccCCCcccc
Q 011424 200 YPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL--PETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKS 277 (486)
Q Consensus 200 ~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (486)
.++-...- ..+-+. .+....+...++....+ -|.+..+. +..++... .++.+..+.+
T Consensus 202 ---~~~~~ghT-~LG~~l--~~~~~tc~~slical~lg~~D~rAeri------------lh~e~g~~--Ge~pkLtdv~- 260 (459)
T KOG4686|consen 202 ---MFPGVGHT-LLGLWL--CFEVKTCKQSLICALSLGLSDDRAERI------------LHLEEGFL--GEEPKLTDVN- 260 (459)
T ss_pred ---hcccchHH-HHHHHH--HHHHHHHHHHHHHHHHhhhhhhHHHHH------------HhhhcCcc--cCCccccccc-
Confidence 01100000 000000 11111111111111111 11110000 00000000 0011111111
Q ss_pred cccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 011424 278 LLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVA 357 (486)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (486)
- -.|++|...++++++....+-+.+.-+.+.++. +|+|+..++.+.+.....+.+.++ +.+.+.|+.|++...
T Consensus 261 ~-f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~r-----fGlS~~~a~~i~s~vy~Isav~sp-vfg~i~Dk~G~n~~w 333 (459)
T KOG4686|consen 261 T-FYPPFWVLVIICVLYYVAWFPFITLGPMFFQKR-----FGLSAVSAGNILSTVYGISAVLSP-VFGAISDKYGFNLWW 333 (459)
T ss_pred c-cCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-----hCCChhhccchhhhhhhhhhhhhh-hHHHhHhhhcceehh
Confidence 1 246788888888888877777777777666655 899999999999988888888888 445555666776555
Q ss_pred HHHHHHH-HHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHh
Q 011424 358 RIAGVLT-IPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGP 436 (486)
Q Consensus 358 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~ 436 (486)
..+..+. ..+-..+.+.. . .++. ...+.+..........+-.+..++|+++.|++.|.++.+.++|-++.|
T Consensus 334 v~~a~~~tl~~H~~l~Ft~-l---sPy~----~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~ 405 (459)
T KOG4686|consen 334 VASACILTLLGHSGLFFTF-L---SPYT----SMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIP 405 (459)
T ss_pred HHHHHHHHHHHhhhHHhhh-c---cHHH----HHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHh
Confidence 4443333 22322322221 1 1222 222333344444445666777788999999999999999999999999
Q ss_pred hhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhc
Q 011424 437 AGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK 478 (486)
Q Consensus 437 ~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~ 478 (486)
.++|.+.|..+++. .....|+..+.+++.+..+.+.
T Consensus 406 Iiag~i~d~~g~y~------~le~ffl~~~~~aL~svgil~~ 441 (459)
T KOG4686|consen 406 IIAGFIADGDGSYD------NLEAFFLIIGLMALTSVGILFY 441 (459)
T ss_pred hhhheeecCCCchh------hHHHHHHHHHHHHHHHHHHHhh
Confidence 99999988763221 2344555566666666555544
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-20 Score=181.28 Aligned_cols=364 Identities=16% Similarity=0.085 Sum_probs=225.2
Q ss_pred ChhHHHHHHHHHHHhhhhhhhhccc-HHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhh----cCCch
Q 011424 39 PITELFSIWIIVLCTALPISSLFPF-LYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR----YGRKP 113 (486)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr----~Grr~ 113 (486)
++++.+.-.++.+...+........ .+.+.+++|++..+ .|.+.++..+..++..|+.|.++|| +||||
T Consensus 7 ~~~~~~~yg~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~------~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrr 80 (444)
T PRK09669 7 TTKDKIGYGLGDTACNLVWQTVMLFLAYFYTDVFGLSAAI------MGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFR 80 (444)
T ss_pred cHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHcccceeeEeeecCCCCCCCcc
Confidence 3444444444444444434444444 45677889999999 9999999999999999999999998 78755
Q ss_pred h-hhHHHHHHHHHHHHHhccch------HHHHHHHHHHHHhhccchh-hHHHHHhhhc-cchhhhhHhhHHHHHhhhhHH
Q 011424 114 V-IIMGTASVVIFNTLFGLSVN------FWMAVLTRFLLGSLNGLLG-PIKAYACEIF-REEHQALGLSTVSTAWGIGLI 184 (486)
Q Consensus 114 ~-l~~~~~~~~~~~~~~~~a~~------~~~l~~~r~l~G~~~g~~~-~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~ 184 (486)
. ++.+.+..+++.++....|+ +..+++..++.+.+..... |-.++.+|+. +++||.+..++......+|..
T Consensus 81 p~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~ 160 (444)
T PRK09669 81 PYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGL 160 (444)
T ss_pred hhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 5 55676777776655544432 4566666666676544443 4488899988 568899999999888899988
Q ss_pred HHhhhhhhhcccCccCCcccccccccccCCChhhHHHHHHHHHHHHH-HHHhcCCcccCCCCCCCcccchhhhccccccc
Q 011424 185 IGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAE 263 (486)
Q Consensus 185 ig~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (486)
+++.+...+.. .++.. .. +.+|+....+.++++++..+ ..+..+|.++..+ ++
T Consensus 161 i~~~~~~pl~~-------~~~~~-~~-~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~~~~--~~--------------- 214 (444)
T PRK09669 161 IVSVIALPLVD-------ILGKG-DE-QKGYFYAMMVMGLLGVVLFFCCFFMTKERYTPEV--DN--------------- 214 (444)
T ss_pred HHHHHHHHHHH-------HhCCC-ch-hhhHHHHHHHHHHHHHHHHHHHhCCeEEecCCCC--cC---------------
Confidence 88877666554 22211 01 34566555555555544433 3333444322110 00
Q ss_pred hhhhcccCCCcccccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHH
Q 011424 264 VKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSL 343 (486)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 343 (486)
+.+.....++++|||+++...+..++............ .|+.... .+ ++...+.......+..+++.+ +
T Consensus 215 ----~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~-~y~~~~~----~~-~~~~~~~~~~~~~i~~ii~~~-~ 283 (444)
T PRK09669 215 ----SSSVWKDLKLLLGNSQWRIMFIFNVVLLTAVVTRGGAT-LYYVNYV----LL-RPDLATLFLVTGMIAGLFGAL-L 283 (444)
T ss_pred ----CCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhh-heeeeee----cC-CHHHHHHHHHHHHHHHHHHHH-H
Confidence 01112345677899998887776665544443333333 3332221 12 223334444444556666655 5
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccc-------cCc
Q 011424 344 YPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVD-------QDQ 416 (486)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 416 (486)
.+++.||+|+|+....+.....+....+.+.. . .......+..++.+.+.....+..+++.+|..| ++.
T Consensus 284 ~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~ 359 (444)
T PRK09669 284 SERLLGKFDRVRAFKWTIVAFVILSALIFFIP---P-SNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRL 359 (444)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHHHHHhC---c-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCc
Confidence 66677778998888777655443333222221 1 112223333445556666777888888888765 334
Q ss_pred hhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 011424 417 RGAANGIAMTGMSLFKAAGPAGGGALFSWAQKR 449 (486)
Q Consensus 417 ~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~ 449 (486)
.|...|+.+....+|.++++.+.|.+++..+..
T Consensus 360 ~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy~ 392 (444)
T PRK09669 360 DGLVFSTNLFAIKLGLAIGGAVVGWILAWVDYV 392 (444)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 567789999999999999999999999987543
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-19 Score=175.76 Aligned_cols=369 Identities=12% Similarity=0.075 Sum_probs=227.9
Q ss_pred hHHHHHHHHHHHhhhhhhhhcccHH-HHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhh----hcCCc-hh
Q 011424 41 TELFSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD----RYGRK-PV 114 (486)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~d----r~Grr-~~ 114 (486)
++.+...++.+...+......+.++ ++.+.+|++... +|.+..+.-+.-++..|+.|.++| |+||| +.
T Consensus 6 ~~~~~yg~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~------vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~ 79 (473)
T PRK10429 6 TTKLSYGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGL------VGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPW 79 (473)
T ss_pred hHHHhhccchhHHhHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchh
Confidence 3344444555566666666666665 555667999998 999999999999999999999999 66985 55
Q ss_pred hhHHHHHHHHHHHHHhccc------hHHHHHHHHHHHHhhccchhhH-HHHHhhhc-cchhhhhHhhHHHHHhhhhHHHH
Q 011424 115 IIMGTASVVIFNTLFGLSV------NFWMAVLTRFLLGSLNGLLGPI-KAYACEIF-REEHQALGLSTVSTAWGIGLIIG 186 (486)
Q Consensus 115 l~~~~~~~~~~~~~~~~a~------~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~ig 186 (486)
++++.+..+++.+++...+ .+..+++..++.+++.....+. .++.+|.. +++||.+..++.....++|..+.
T Consensus 80 il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~ 159 (473)
T PRK10429 80 ILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVT 159 (473)
T ss_pred HhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777765554433 1344555666667776665554 88999998 58999999998777778877766
Q ss_pred hhhhhhhcccCccCCcccccccccccCCChhhHHHHHHHHHHHH-HHHHhcCCcccCCCCCCCcccchhhhccccccchh
Q 011424 187 PALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVK 265 (486)
Q Consensus 187 ~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (486)
+.+...+.+ .+|... - ..+|+....+.++..++.. +..+..+|.++....+.++++
T Consensus 160 ~~~~~~~~~-------~~g~~~-~-~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~-------------- 216 (473)
T PRK10429 160 AGFTLPFVN-------YVGGGD-R-GFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSAEGS-------------- 216 (473)
T ss_pred HHHHHHHHH-------HhCCCc-h-hhhHHHHHHHHHHHHHHHHHHHHcCceecCCcccccccccc--------------
Confidence 666554443 222110 0 2234444444444433332 333345664321111000000
Q ss_pred hhcccCCCcccccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHH
Q 011424 266 EEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYP 345 (486)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (486)
+.+.....+.+++||+++..++..++............+.|.... .+ +....+.+.....+..+++.+ ..+
T Consensus 217 --~~~~~~~~~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~-----~~-~~~~~~~~~~~~~i~~ii~~~-~~~ 287 (473)
T PRK10429 217 --HLTLKDIVALIYKNDQLSCLLGMALAYNIASNIINGFAIYYFTYV-----IG-DADLFPYYLSYAGAANLVTLI-LFP 287 (473)
T ss_pred --CCCHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEE-----CC-CHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 011112345567898888777777666654444444433232221 22 344556666666677777776 567
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccc-------cCchh
Q 011424 346 FLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVD-------QDQRG 418 (486)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~g 418 (486)
++.||+|+|+....+..+..++.+.+........ .......+..++.+.......+...++.+|..| .+..|
T Consensus 288 ~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G 366 (473)
T PRK10429 288 RLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAP-HNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCES 366 (473)
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchh
Confidence 7888889999988777655544444332211111 112223333344445555666777778888755 34456
Q ss_pred hHHhHHHHHHHHHHHHHhhhHHHHHHHHhh
Q 011424 419 AANGIAMTGMSLFKAAGPAGGGALFSWAQK 448 (486)
Q Consensus 419 ~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~ 448 (486)
...|.......++..+++.+.|.+.+..+.
T Consensus 367 ~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 367 IAYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 689999999999999999999999987754
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-18 Score=167.18 Aligned_cols=363 Identities=18% Similarity=0.149 Sum_probs=251.5
Q ss_pred hhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhh-HHHHHHHHHHHHHhcc-c-hHHHHHHHHHHHHhhccchhhH-H
Q 011424 81 GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII-MGTASVVIFNTLFGLS-V-NFWMAVLTRFLLGSLNGLLGPI-K 156 (486)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~-~~~~~~~~~~~~~~~a-~-~~~~l~~~r~l~G~~~g~~~~~-~ 156 (486)
+.+.++..++..+..++..|+.|.++|+-|+||.++ +...+..+++....+. + +++...+.-++.-++.+..... .
T Consensus 69 ~s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyn 148 (477)
T PF11700_consen 69 SSLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYN 148 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344678899999999999999999999998776555 4555555666666663 3 3444444444444566666665 8
Q ss_pred HHHhhhccchhh--------------------------hhHhhHHHHHhhhhHHHHhhhhhhhcccCccCCccccccccc
Q 011424 157 AYACEIFREEHQ--------------------------ALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLF 210 (486)
Q Consensus 157 ~~i~~~~~~~~r--------------------------~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~~~~gw~~~~ 210 (486)
+++.|..+++++ ++..+.-.....+|.++.-.+.-.+.... +....
T Consensus 149 a~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~-------~~~~~- 220 (477)
T PF11700_consen 149 AYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISP-------GSTAS- 220 (477)
T ss_pred HHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcC-------CCccc-
Confidence 999999999888 89988888888888888777766665411 11100
Q ss_pred ccCCChhhHHHHHHHHHHH-HHHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCCCcccccccchhhHHHHH
Q 011424 211 GKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSII 289 (486)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (486)
..++.|..+.+.++.-++. +...+++||.|+.+..++.. +..... -++-....++..|.|...+.++
T Consensus 221 ~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~-~~~~~g-----------~~~l~~t~k~~~~~~~~~~fLi 288 (477)
T PF11700_consen 221 NTWAIRVAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSGS-SYLRFG-----------FKRLWRTFKEIRKLRQLFLFLI 288 (477)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcch-hHHHHH-----------HHHHHHHHHHHHhChHHHHHHH
Confidence 0334566666666554443 44566778776532211110 000000 0111234566667888888888
Q ss_pred HHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHH
Q 011424 290 VYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPI--MVARIAGVLTIPL 367 (486)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 367 (486)
.++++.-...........|..+. +|++..+...+.....+.++++.+ ..++++||+|.| +.+........+.
T Consensus 289 a~~l~~dg~~ti~~~~~i~a~~~-----lg~s~~~l~~~~l~~~i~a~~Ga~-~~g~l~~r~g~k~~~~l~~~l~~~~~i 362 (477)
T PF11700_consen 289 AYFLYSDGVNTIISFAGIYATEV-----LGMSTTQLIVFGLVVQIVAIIGAL-LFGWLQDRFGPKTKRTLLISLILWIII 362 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-----cCcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCchhHHHHHHHHHHHHH
Confidence 88888877777777777777655 899999999999999999999998 777999999988 6666555444222
Q ss_pred HHH--HHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHH
Q 011424 368 LTS--YPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSW 445 (486)
Q Consensus 368 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 445 (486)
.+. +++.....+......+.+..++.+.+.++.++...++.+++.|+++.+...|++.......+.+||.+.|.+.+.
T Consensus 363 ~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~ 442 (477)
T PF11700_consen 363 PLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDA 442 (477)
T ss_pred HHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 111111111222223455666777788899999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhc
Q 011424 446 AQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK 478 (486)
Q Consensus 446 ~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~ 478 (486)
++ ..+..+....++.+++.++.++
T Consensus 443 tg---------~~r~g~~~l~~lf~~gl~ll~~ 466 (477)
T PF11700_consen 443 TG---------SQRYGFLFLLVLFLIGLILLFF 466 (477)
T ss_pred hC---------CchhHHHHHHHHHHHHHHHHhh
Confidence 83 3677888888888888777766
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-19 Score=174.67 Aligned_cols=344 Identities=15% Similarity=0.125 Sum_probs=246.0
Q ss_pred ccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhh----hcCCchhhh-HHHHHHHHHHHHHhcc-c--
Q 011424 62 PFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD----RYGRKPVII-MGTASVVIFNTLFGLS-V-- 133 (486)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~d----r~Grr~~l~-~~~~~~~~~~~~~~~a-~-- 133 (486)
...+.+.+.+|+++.. .|.+..+..+..++..|+.|.++| |+||||..+ ++.+..+++.+++... |
T Consensus 23 ~~~~f~~~~~gl~~~~------~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~ 96 (428)
T PF13347_consen 23 YLLYFYTDVLGLSPAL------AGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAG 96 (428)
T ss_pred HHHHHHHHHcCCCHHH------HHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccch
Confidence 3345677778999988 999999999999999999999999 899776655 6778888887777765 4
Q ss_pred -----hHHHHHHHHHHHHhhccchhh-HHHHHhhhcc-chhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccCCccccc
Q 011424 134 -----NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFR-EEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSS 206 (486)
Q Consensus 134 -----~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~~~~gw 206 (486)
....+.+..++..++...... -.++.+|..+ +++|.+..+.-.....+|..+...+.+.+.+ .+|.
T Consensus 97 ~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~-------~~g~ 169 (428)
T PF13347_consen 97 LSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVS-------WFGG 169 (428)
T ss_pred hhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhh-------hhcc
Confidence 233456666666777666555 4899999997 5789999999999999999877777777765 2222
Q ss_pred ccccccCCChhhHHHHHHHHHHHH-HHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCCCcccccccchhhH
Q 011424 207 ESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLM 285 (486)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (486)
... ..+|+....+.+++.++.. +..+..+|+++..+++++ +.+..+..+++++||+++
T Consensus 170 ~~~--~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~-------------------~~~~~~~~~~~~~nr~~~ 228 (428)
T PF13347_consen 170 GDT--SNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEK-------------------KISLRDSLRSLFRNRPFR 228 (428)
T ss_pred Ccc--chHHHHHHHHHHHHHHHHhhhhhheeeecccccccccc-------------------ccccccchhhhcccchHH
Confidence 110 1145655566655555543 444556772111111110 222345678889999999
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 011424 286 SSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTI 365 (486)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (486)
...+..++............+.|.... .|.+ ...+.......+..+++.+ +.+++.||+|+|+....+..+..
T Consensus 229 ~l~~~~~~~~~~~~~~~~~~~y~~~~v-----l~~~-~~~~~~~~~~~~~~~v~~~-~~~~l~~r~gk~~~~~~~~~~~~ 301 (428)
T PF13347_consen 229 ILLLAFFLQWLAFALMNTFLPYYFTYV-----LGNE-GLISIFMLIFFVASIVGSP-LWGRLSKRFGKKKVYIIGLLLAA 301 (428)
T ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHH-----hcCc-hhhHHHHHHHHHHHHHHHH-HHHHHHHHccceeehhhhHHHHH
Confidence 888888887777666666666665544 3333 4566667777888888877 66888899999999999988888
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccc-------cCchhhHHhHHHHHHHHHHHHHhhh
Q 011424 366 PLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVD-------QDQRGAANGIAMTGMSLFKAAGPAG 438 (486)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~~g~~~~~~~ 438 (486)
++.+.+.+... .......+...+.+.+........+++..|..+ ++..|...|+.+....++..+++.+
T Consensus 302 ~~~~~~~~~~~----~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i 377 (428)
T PF13347_consen 302 LGFLLLFFLGP----GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAI 377 (428)
T ss_pred HHHHHHHHHHh----hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHH
Confidence 88777766542 222344455556666667777778888888765 3556999999999999999999999
Q ss_pred HHHHHHHHhhhc
Q 011424 439 GGALFSWAQKRL 450 (486)
Q Consensus 439 ~g~l~~~~~~~~ 450 (486)
.|.+.+..+...
T Consensus 378 ~g~~l~~~Gy~~ 389 (428)
T PF13347_consen 378 VGLLLALVGYDA 389 (428)
T ss_pred HHHHHHHhCcCC
Confidence 999998875443
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.3e-19 Score=164.02 Aligned_cols=292 Identities=16% Similarity=0.123 Sum_probs=199.0
Q ss_pred ccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccCCc-cccccc
Q 011424 131 LSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPN-LFSSES 208 (486)
Q Consensus 131 ~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~~-~~gw~~ 208 (486)
...+|+.++++-++.|.|.+...+. ..++++..++|++.+.+++.+..+++|..++|.+++.+......... ..+-..
T Consensus 6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~ 85 (310)
T TIGR01272 6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATAN 85 (310)
T ss_pred HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhh
Confidence 4578999999999999999998886 99999999999999999999999999999999999988842100000 000000
Q ss_pred ccccCCChhhHHHHHHHHHHHHHHHHh--cCCcccCCCCCCCcccchhhhccccccchhhhcccCCCcccccccchhhHH
Q 011424 209 LFGKFPYFLPCLCISLFAFGVTIAAFW--LPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMS 286 (486)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (486)
.. .+.|+.++...+...++..+.+.+ +||.+++++++ . . ++ +....++.+++|.++.
T Consensus 86 ~~-~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~~~~~----~-~--------------~~-~~~~~~~~~~~~~~~l 144 (310)
T TIGR01272 86 AE-AAKVHTPYLLLAGALAVLAIIFAFLPLPELQEADVAR----V-S--------------SG-DTTQKTSAFQFTHLVL 144 (310)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcccccc----c-c--------------cc-cccchhhHHhhHHHHH
Confidence 00 124555656444443333333333 34432111100 0 0 00 0011234677888888
Q ss_pred HHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 011424 287 SIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIP 366 (486)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (486)
..+..+++.....+...+.+.|+.++ ..+|+++.+.+...+....+.+++++ ...++.||+++++.+.++..+..+
T Consensus 145 ~~~~~f~yvg~e~~~~~w~~~yl~~~---~~~g~s~~~a~~~~s~~~~~~~iGr~-~~~~l~~r~g~~~~l~~~~~l~~~ 220 (310)
T TIGR01272 145 GALGIFVYVGAEVSAGSFLVNFLSDP---HALGLPEDQAAHFTAYTWGGAMVGRF-IGSAVMPMISQGRYLAFNAFLAVL 220 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc---ccCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCHHHHHHHHHHHHHH
Confidence 88888888888889999999998643 22589999999999999999999998 667777788988888777666665
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHHH
Q 011424 367 LLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWA 446 (486)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 446 (486)
+..+..... . .. ......+.+++....+|...+...+..|+ +.+++.++. ....+|+++.|.+.|.+.|..
T Consensus 221 ~~~l~~~~~---~--~~--~~~~~~l~g~~~s~i~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~~ 291 (310)
T TIGR01272 221 LSIGAALTH---G--YV--AMWFVLALGLFNSIMFPTIFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADCL 291 (310)
T ss_pred HHHHHHHcC---C--HH--HHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHhc
Confidence 553333221 1 11 11223345567778888888888876774 466777775 678899999999999999987
Q ss_pred hhhcCCCCCCchhHHHHHHH
Q 011424 447 QKRLDASFLPGSQMVFFVLN 466 (486)
Q Consensus 447 ~~~~~~~~~~g~~~~f~~~~ 466 (486)
|.+..|++..
T Consensus 292 ----------g~~~a~~v~~ 301 (310)
T TIGR01272 292 ----------GIQLAFALPV 301 (310)
T ss_pred ----------cchHHHHHHH
Confidence 6777766433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.5e-19 Score=170.71 Aligned_cols=358 Identities=16% Similarity=0.114 Sum_probs=213.3
Q ss_pred ChhHHHHHHHHHHHhhhhhhhhcccHH-HHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhc----CCch
Q 011424 39 PITELFSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY----GRKP 113 (486)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~----Grr~ 113 (486)
++++.+.-.++.+...+......+.++ ++.+++|++..+ +|.+.+...+..++..++.|+++||. ||||
T Consensus 6 ~~~~~~~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~------~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~ 79 (448)
T PRK09848 6 SWRTIVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAA------AGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFR 79 (448)
T ss_pred cHHHHHhhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHhhhhheeeeecCCCCCcCch
Confidence 344455455555555666655555554 566667999998 99999999999999999999999996 7777
Q ss_pred hh-hHHHHHHHHHHHHH-hc----cc--hHHHHHHHHHHHHhhccchhhH-HHHHhhhcc-chhhhhHhhHHHHHhh---
Q 011424 114 VI-IMGTASVVIFNTLF-GL----SV--NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFR-EEHQALGLSTVSTAWG--- 180 (486)
Q Consensus 114 ~l-~~~~~~~~~~~~~~-~~----a~--~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~-~~~r~~~~~~~~~~~~--- 180 (486)
.+ .++.+...+..++. .. ++ ....+++.-++.+++.+...+. .++..|..+ +++|.+..+.-..+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~ 159 (448)
T PRK09848 80 PFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTF 159 (448)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 55 55555444444332 21 11 2233444556677777666654 666676664 5678887666554433
Q ss_pred --hhHHHHhhhhhhhcccCccCCcccccccccccCCChhhHHHHHHHHHHH-HHHHHhcCCcccCCCCCCCcccchhhhc
Q 011424 181 --IGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDAL 257 (486)
Q Consensus 181 --~g~~ig~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 257 (486)
++..++|.++..... ..... ...|+ .+..+..++. ++.....||+++.+.++
T Consensus 160 ~~~~~~~~p~i~~~~g~-------~~~~~----~~~~~---~~~~v~~~~~~~~~~~~~~e~~~~~~~~----------- 214 (448)
T PRK09848 160 VCLAFLIGPSIKNSSPE-------EMVSV----YHFWT---IVLAIAGMVLYFICFKSTRENVVRIVAQ----------- 214 (448)
T ss_pred HHHHHHHHHHHHHhCCC-------chhhh----HHHHH---HHHHHHHHHHHHHHHcCcEeccCCCccC-----------
Confidence 445555555543221 00000 00112 1222222222 22233345543211100
Q ss_pred cccccchhhhcccCCCcccccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHH
Q 011424 258 ESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLL 337 (486)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 337 (486)
......++++++||+++...+..++............+.|..+. +|.++...++......++.+
T Consensus 215 -----------~~~~~~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~ 278 (448)
T PRK09848 215 -----------PSLKISLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYV-----LNDTGLFTVLVLVQNLVGTV 278 (448)
T ss_pred -----------CCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeee-----cCChHHHHHHHHHHHHHHHH
Confidence 00112356788999998887777776665555555555444433 56555555554444455566
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccC--
Q 011424 338 VFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQD-- 415 (486)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 415 (486)
++.+ ..+++.||+++|+.+..+..+..++...+.+... ...+ ...+...+.+.+.....+...++..+..|.+
T Consensus 279 ~~~~-l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~---~~~~-~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~ 353 (448)
T PRK09848 279 ASAP-LVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSV---WSLP-VALVALAIASIGQGVTMTVMWALEADTVEYGEY 353 (448)
T ss_pred HHHH-HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCc---hhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 6666 5566777789999988887776666555543211 1122 2222333444455556666777777766543
Q ss_pred -----chhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhh
Q 011424 416 -----QRGAANGIAMTGMSLFKAAGPAGGGALFSWAQK 448 (486)
Q Consensus 416 -----~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~ 448 (486)
.+|...|+.+....+|..+++.+.|.+.+..+.
T Consensus 354 ~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 354 LTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred hhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 469999999999999999999999999987643
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-19 Score=167.85 Aligned_cols=404 Identities=15% Similarity=0.178 Sum_probs=248.7
Q ss_pred cccCCCChhHHHHHHHHHHHhhhhhhhhcccHHHHHHH--hcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcC
Q 011424 33 DTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKD--FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG 110 (486)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~G 110 (486)
++.++.+|+.+++..+..++.....+++.+..-.+.++ .+.+.+. .|++.++..++.+++++.+|++..|.+
T Consensus 26 ~~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~f------fG~viaa~slg~~i~~liF~~Ws~k~~ 99 (488)
T KOG2325|consen 26 LDERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATF------FGLVIAASSLGHAIFSLIFGIWSNKTG 99 (488)
T ss_pred ccccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcch------hhHHHHHHHHHHHhcchhhcccccccC
Confidence 34456788889999999999999999999988777777 5556666 999999999999999999999999999
Q ss_pred C-chhhhHHHHHHHHHHHHH-hc---cc-hHHHHHHHHHHHHhhccchhhHHHHHhhhccchhhhhHhhHHHHHhhhhHH
Q 011424 111 R-KPVIIMGTASVVIFNTLF-GL---SV-NFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLI 184 (486)
Q Consensus 111 r-r~~l~~~~~~~~~~~~~~-~~---a~-~~~~l~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ 184 (486)
. |+.++.|.++..++.++. ++ .+ .-+.++++|++.|+|.|......+|+++....++|.++++....+..+|.+
T Consensus 100 ~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~i 179 (488)
T KOG2325|consen 100 SVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGII 179 (488)
T ss_pred CcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHH
Confidence 7 899999999999999988 33 23 678999999999999999988899999999999999999999999999999
Q ss_pred HHhhhhhhhcccCccCCcccccccc--cccCCChhhHHHHHHHHHHHH-HHHHhcCCcccCCCCCCCcccchhhhccccc
Q 011424 185 IGPALGGFLAQPAEKYPNLFSSESL--FGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESAS 261 (486)
Q Consensus 185 ig~~l~~~l~~~~~~~~~~~gw~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 261 (486)
+||.++..+.... .-|+... ....-+-.+.++..+..++.+ ++.++++|.++...+++.+.+. ++
T Consensus 180 lGp~~q~~f~~Lg-----~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~~-------~~ 247 (488)
T KOG2325|consen 180 LGPTIQLAFTPLG-----EKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSVE-------EE 247 (488)
T ss_pred HhHHHHHHHhhhc-----CCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccch-------hh
Confidence 9999988876532 1122211 101234566677777777755 4455677766544332211110 00
Q ss_pred cchhhhcccCCCcccccccch-hhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchh----HHHHHHHHHHH
Q 011424 262 AEVKEEEGREATPKKSLLKNW-PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMV----GEVLAITGFSL 336 (486)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~~ 336 (486)
+. +....+..--++ ..+...+..+...+......+.. ++.....++++.+++ +...+..++..
T Consensus 248 ~~-------~~~~~~~~~~d~~~~~vc~~~~~~~~~~~~~iet~~-----~~~~m~~y~w~~~~av~~~gi~~~~~g~ls 315 (488)
T KOG2325|consen 248 KS-------DIEKVKKPKLDWVAVLVCIFLRFVVNFIATTIETLS-----SALTMVMYGWTGSEAVLYNGITLSISGILS 315 (488)
T ss_pred cc-------chhhhccCChhHHHHHHHHHHHHHHHHHHHHHHhcc-----chHHHHHhccccchHHHhhhhHHHHHHHHH
Confidence 00 000000000111 11222222222222222211211 122222245555443 44444444444
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH--Hhhh--------------hhh---------HHHHHHHH-H
Q 011424 337 LVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYI--AMLS--------------GFG---------LAFLLNCA-S 390 (486)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--------------~~~---------~~~~~~~~-~ 390 (486)
+...+.....--.++.+|..+..+.........+.... .... ... ++...++. .
T Consensus 316 ~~~~l~~~f~~l~~i~~r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i 395 (488)
T KOG2325|consen 316 VILLLLYIFTRLGKIDKRRIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFI 395 (488)
T ss_pred HHHHHHHHHHHhhhhccceeeeehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehh
Confidence 44333111111122233444444433333332222111 0000 000 11111111 1
Q ss_pred HHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHH
Q 011424 391 VVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEA 470 (486)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~ 470 (486)
+..+...-.......+..+|...|.++++.+|+.......+..++|.+...++... |+++.+.+.++..+
T Consensus 396 ~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~----------g~~~v~~~~~~~~l 465 (488)
T KOG2325|consen 396 VVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLS----------GPRPVWIILLCLLL 465 (488)
T ss_pred heeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhc----------CccHHHHHHHHHHH
Confidence 12222222233456778889999999999999999999999999999999998887 78877777666655
Q ss_pred HHHHHh
Q 011424 471 IGVLMT 476 (486)
Q Consensus 471 ~~~~~~ 476 (486)
+...+.
T Consensus 466 ~~~~l~ 471 (488)
T KOG2325|consen 466 VVAALW 471 (488)
T ss_pred HHHHHH
Confidence 554443
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.5e-19 Score=160.00 Aligned_cols=397 Identities=12% Similarity=0.052 Sum_probs=258.2
Q ss_pred CChhHHHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhH
Q 011424 38 LPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM 117 (486)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~ 117 (486)
++|..++...+..+.+.+....+.+...+....++ +.+. .-|+.-+|.+.+....+++-|+.||+|-|..+++
T Consensus 42 rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~------~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~ll 114 (480)
T KOG2563|consen 42 RRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSA------ADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLL 114 (480)
T ss_pred hHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHH------HHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHH
Confidence 34444445555666666777777777777788888 5555 7899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccc------hHH--HHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhh
Q 011424 118 GTASVVIFNTLFGLSV------NFW--MAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPA 188 (486)
Q Consensus 118 ~~~~~~~~~~~~~~a~------~~~--~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~ 188 (486)
+.++.+++..+-..+. .++ ....+..+.+.++-..... ..+..-|++++||..+..+-..+..+|.++|.+
T Consensus 115 gt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~l 194 (480)
T KOG2563|consen 115 GTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFL 194 (480)
T ss_pred HHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhh
Confidence 9999999998877752 344 5556666666665555555 556667999999999999999999999999999
Q ss_pred hhhhhcccCccCCcccccccccccCCChhhHHHHHHHHHHHH-HHHHhcCCcccCCCCCCCcccchhhhccccccchhhh
Q 011424 189 LGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEE 267 (486)
Q Consensus 189 l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (486)
+...+.....+.+ ...| .....+......+.+.+ +..+..+|.|+..+...+....
T Consensus 195 lppilV~~~~~~~-~~~~-------~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~~--------------- 251 (480)
T KOG2563|consen 195 LPPILVPSSKDSE-DNSW-------LFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAALQ--------------- 251 (480)
T ss_pred ccceecCCCCCcc-hhHH-------HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhhh---------------
Confidence 9999887331111 1111 11112232333333322 2333444444443332111110
Q ss_pred cccCCCcccccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 011424 268 EGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFL 347 (486)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (486)
+.+-.++.++.++|+++....+++........+..+.+ ...... .|++...+|+......+++++++...+.+.
T Consensus 252 ~~~f~~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l----~~~l~~--sgY~~~~aG~ig~l~iv~Gmlga~~~gii~ 325 (480)
T KOG2563|consen 252 DASFPKSIKSCFKNRQFIILAICYGIGLGLFNSLSTLL----NLALCP--SGYEGVFAGYIGALMIVAGMLGALASGIIA 325 (480)
T ss_pred cCcHHHHHHHHHcCccHHHHHHHHhhhHHHHHHHHHHh----hhcccc--ccCCccccchhHHHHHHHHHHHHHHHHhhh
Confidence 11134567789999999888777776554444443322 212222 466668899999999999999999777777
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHH
Q 011424 348 ERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTG 427 (486)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 427 (486)
||+.+-|....+......++...+..... .....+++.......+.+..+..|...-+..|..-|..-++..|+.+..
T Consensus 326 Dktk~fk~~~~v~~~~~~v~~~~l~~~t~--~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~ 403 (480)
T KOG2563|consen 326 DKTKKFKLTTLVLYLFALVGTLMLLTCTL--FLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLS 403 (480)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhc--cCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEee
Confidence 77655555555555444444322222222 2223334455556667777888888888888877667788999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhc
Q 011424 428 MSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK 478 (486)
Q Consensus 428 ~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~ 478 (486)
+++-+.+-..+.+...+...... .+...-+.....+++...+..+
T Consensus 404 gq~f~~~~~~~~~~~~~~~~~~~------~~~~~~i~~~~~~~l~~~lva~ 448 (480)
T KOG2563|consen 404 GQIFGVILVFIMGILAEDLGPPG------NTFPANIFLTVSALLGAILVAF 448 (480)
T ss_pred hhHHHHHHHHHHHHHhhccCCCC------CCccchhHhHHHHHHHHHHHhh
Confidence 99999988888887766542110 1333334444455555555444
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.7e-18 Score=152.24 Aligned_cols=363 Identities=12% Similarity=-0.014 Sum_probs=244.3
Q ss_pred hhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhh-HHHHHHHHHHHHHhccch--H-HHHHHHHHHHHhhccchhhH
Q 011424 80 IGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII-MGTASVVIFNTLFGLSVN--F-WMAVLTRFLLGSLNGLLGPI 155 (486)
Q Consensus 80 ~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~-~~~~~~~~~~~~~~~a~~--~-~~l~~~r~l~G~~~g~~~~~ 155 (486)
.+.+.+...++..+..++..|+.|.++|+.|+||..+ ....+..++.++..++++ + +..++.-.+..++.....+.
T Consensus 56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vf 135 (438)
T COG2270 56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVF 135 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhee
Confidence 3455899999999999999999999999999766554 455666666666666554 4 44455556777776666666
Q ss_pred -HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhc--ccCccC-CcccccccccccCCChhhHHHHHHHHHHHH-
Q 011424 156 -KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA--QPAEKY-PNLFSSESLFGKFPYFLPCLCISLFAFGVT- 230 (486)
Q Consensus 156 -~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~--~~~~~~-~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~- 230 (486)
.+++.+..++++-++..+.-.....+|+.+--...-... ....+. ...++-...- ...-|+.+.+.++-.++..
T Consensus 136 yds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~ri~~~l~A~W~li~~i 214 (438)
T COG2270 136 YDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPAD-GEDVRITGLLAALWWLLFAL 214 (438)
T ss_pred hhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccc-cccchhHHHHHHHHHHHHHh
Confidence 999999999988888877766666777666544432111 100000 0011111111 3334555555554444433
Q ss_pred HHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCCCcccccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhc
Q 011424 231 IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWAN 310 (486)
Q Consensus 231 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (486)
-.++..|+.++.. .+..+...+. -++-..+.++..+++++...++..+++.-.......+-..|..
T Consensus 215 Pm~~~v~~~~~~~---~~~~~~l~~g-----------~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~ 280 (438)
T COG2270 215 PMILNVHDAEKIS---SPPPTALRNG-----------FKELKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGA 280 (438)
T ss_pred HHHhccccccccc---ccchHHHHHH-----------HHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2334444443221 0111111000 0111234566777788888888888777666666666666655
Q ss_pred CccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 011424 311 SPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCAS 390 (486)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (486)
.. +|++..+..++.....+.++++++ +.+++++|++.|+++..+.++..+..+...+... + ....+..
T Consensus 281 ~~-----~gls~~~lll~g~~~~vvA~lg~i-i~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~--~----~~f~i~g 348 (438)
T COG2270 281 AD-----LGLSSTELLLIGIALSVVAALGAI-IAGFLDERFGSKPVLMIGLVILSIAALYLIFLEG--E----LDFWILG 348 (438)
T ss_pred HH-----cCccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCceeehHHHHHHHHHHHHHHHccc--c----HHHHHHH
Confidence 44 899999999999999999999998 7789999999998888877666555444433322 1 1233455
Q ss_pred HHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHH
Q 011424 391 VVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEA 470 (486)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~ 470 (486)
++.+.+.++.+....++..+.+|+++-++..|+++..+.....+||.+.+.+.+.++ ..+..+....++.+
T Consensus 349 ll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg---------~~r~g~~~i~vll~ 419 (438)
T COG2270 349 LLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITG---------SSRAGVLSIIVLLL 419 (438)
T ss_pred HHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhc---------chhhHHHHHHHHHH
Confidence 566667788899999999999999999999999999999999999999999999884 35566677777777
Q ss_pred HHHHHhhc
Q 011424 471 IGVLMTFK 478 (486)
Q Consensus 471 ~~~~~~~~ 478 (486)
++.+..++
T Consensus 420 iGl~~L~~ 427 (438)
T COG2270 420 IGLLLLLR 427 (438)
T ss_pred hhHhhEEe
Confidence 77776666
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-17 Score=153.35 Aligned_cols=399 Identities=17% Similarity=0.140 Sum_probs=268.7
Q ss_pred CCChhHHHHHHHHHHHhhhhhhhhcccHH-HHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhh----hcCC
Q 011424 37 GLPITELFSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD----RYGR 111 (486)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~d----r~Gr 111 (486)
+.+.++...-..+.+............+. .+.+.+|++... .|.+..+.-+--++.-|+.|.++| |+||
T Consensus 8 kLs~~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~------aG~iflv~RiiDAi~DP~~G~i~D~t~~r~Gr 81 (467)
T COG2211 8 KLSLKEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAAL------AGTIFLVARIIDAITDPIMGFIVDRTRSRWGR 81 (467)
T ss_pred cccHHHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHH------HHHHHHHHHHHHHHhcchheeeeccccccccc
Confidence 34455556566666666666666666665 556678999988 999999999999999999999999 4787
Q ss_pred chh-hhHHHHHHHHHHHHHhccch------HHHHHHHHHHHHhhccchhh-HHHHHhhhcc-chhhhhHhhHHHHHhhhh
Q 011424 112 KPV-IIMGTASVVIFNTLFGLSVN------FWMAVLTRFLLGSLNGLLGP-IKAYACEIFR-EEHQALGLSTVSTAWGIG 182 (486)
Q Consensus 112 r~~-l~~~~~~~~~~~~~~~~a~~------~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~-~~~r~~~~~~~~~~~~~g 182 (486)
||. ++.+.+..++.+.++-.+++ ....++.-.+.+++...... -.++.+|+.+ ++||.+..++-+.+.++|
T Consensus 82 fRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g 161 (467)
T COG2211 82 FRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLG 161 (467)
T ss_pred ccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHH
Confidence 655 55677888888888877763 45566677888888666544 4888888875 789999999999999999
Q ss_pred HHHHhhhhhhhcccCccCCcccccccccccCCChhhHHHHHHHHHHHH-HHHHhcCCcccCCCCCCCcccchhhhccccc
Q 011424 183 LIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESAS 261 (486)
Q Consensus 183 ~~ig~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 261 (486)
..+...+...+....++.+. ..+|+....+.+++.++.. .+++-.+|...+....++..
T Consensus 162 ~~l~~~~~~plv~~~g~~~~---------~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~----------- 221 (467)
T COG2211 162 GLLVAVLFPPLVKLFGGGDK---------ALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTGV----------- 221 (467)
T ss_pred HHHHHHHHHHHHHHhCCCcc---------hhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcccc-----------
Confidence 88877777777662221111 2345555555555555543 34444566554222111100
Q ss_pred cchhhhcccCCCcccccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHH
Q 011424 262 AEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQL 341 (486)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 341 (486)
+.+........++||++...++...+.........+...+|.... .|.+.............+.+++.+
T Consensus 222 ------~~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~-----lg~~~l~~~~~~~~~~~~~l~~~~ 290 (467)
T COG2211 222 ------KLKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYV-----LGDPELFAYLLLLASGAGLLIGLI 290 (467)
T ss_pred ------cccHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEEE-----cCChHHHHHHHHHHHHHHHHHHHH
Confidence 111122344678999998888877776666555555555555444 566666666666665555555555
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccc-------c
Q 011424 342 SLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVD-------Q 414 (486)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 414 (486)
..+.+.+|+|+|+...++.++..++.+++.+... ......++..++.+.+.....+..+++.+|.++ .
T Consensus 291 -~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~----~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~ 365 (467)
T COG2211 291 -LWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPA----GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGV 365 (467)
T ss_pred -hHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcC----cchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCC
Confidence 7888899999999999999888888888777652 222233444455556667777888888888663 5
Q ss_pred CchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhcCC-----CCCCchhHHHHHH-HHHHHHHHHHhh
Q 011424 415 DQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDA-----SFLPGSQMVFFVL-NVVEAIGVLMTF 477 (486)
Q Consensus 415 ~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~-----~~~~g~~~~f~~~-~~~~~~~~~~~~ 477 (486)
+.-|...|.+..+.-+|.+++..+.|++.+..+...+. ....|....+.+. +++.+++++...
T Consensus 366 R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gyv~~~~~Q~~~al~gI~~~~~~~Pa~l~l~~~i~~~ 434 (467)
T COG2211 366 RREGIVYSGMTFFRKLGLALAGFIPGWILGAIGYVPNVSAQSASALFGIRFLFIILPALLLLLAAIIIF 434 (467)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66688899999999999999999999999987654433 1122444555554 333333444333
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.7e-17 Score=146.41 Aligned_cols=367 Identities=16% Similarity=0.076 Sum_probs=245.6
Q ss_pred HHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcC-----CchhhhH-HHHHHHHHHHHHhcc-----c-
Q 011424 66 FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG-----RKPVIIM-GTASVVIFNTLFGLS-----V- 133 (486)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~G-----rr~~l~~-~~~~~~~~~~~~~~a-----~- 133 (486)
.+..|++++..- .+.+.+...+.. ...+.+|..+|+.+ ||..+++ +..+...+..+.+++ .
T Consensus 5 VMIvEL~vpA~l------v~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~ 77 (403)
T PF03209_consen 5 VMIVELGVPAWL------VALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAES 77 (403)
T ss_pred hHHHHhccHHHH------HHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccc
Confidence 356678887766 888888887765 57999999999999 8877765 455555555554442 2
Q ss_pred -------hH-H--HHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccCCc
Q 011424 134 -------NF-W--MAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPN 202 (486)
Q Consensus 134 -------~~-~--~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~~ 202 (486)
.+ + ...+.-.+.|+|.+...+. .++++|..|+|+|+++.++...+.-+|.+++..+.+.+.+
T Consensus 78 ~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~------- 150 (403)
T PF03209_consen 78 GQQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLD------- 150 (403)
T ss_pred ccccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHcc-------
Confidence 22 2 2334446778887777776 9999999999999999999999999999999999999887
Q ss_pred ccccccccccCCChhhHHHHHHHHHHHH--HHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCCCccccccc
Q 011424 203 LFSSESLFGKFPYFLPCLCISLFAFGVT--IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLK 280 (486)
Q Consensus 203 ~~gw~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (486)
.+. .-|....+.....+... ++..+=.|.+..+..+.++++ +..-...++++..
T Consensus 151 ~~s--------~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~~~~----------------~~~f~~a~~~~~~ 206 (403)
T PF03209_consen 151 PFS--------PERLIQVIQGVALIALLLNLIALWGQEPRRSRRAAAAERP----------------RPPFREAWRQVWA 206 (403)
T ss_pred ccC--------HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccCCCCC----------------CccHHHHHHHHHh
Confidence 111 12222222222222111 122222333322222000000 1111234556667
Q ss_pred chhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 011424 281 NWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIA 360 (486)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (486)
+|+..+..+..++.......- -...+|+--+-+|++..+..-+....+.+..++-...+.++.++.++++...++
T Consensus 207 ~~~a~~f~~fl~l~t~a~~~Q-----D~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G 281 (403)
T PF03209_consen 207 SPQARRFFVFLFLGTLAFFMQ-----DVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALG 281 (403)
T ss_pred CCChhHHHHHHHHHHHHHHhh-----HHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 777666655555543332222 222345444458999999999999999999998887888888888888888899
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHH
Q 011424 361 GVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGG 440 (486)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g 440 (486)
+..+..++.++.+.....+. ..+....++.++..+.......+...+..++++.|..+|.....+.++..++..+.|
T Consensus 282 ~~~~~~~f~lii~a~~~~~~---~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG 358 (403)
T PF03209_consen 282 CLLGALAFALIILAGPLGSP---WLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGG 358 (403)
T ss_pred HHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888777665543321 123333344555555555566666777788899999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhc
Q 011424 441 ALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK 478 (486)
Q Consensus 441 ~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~ 478 (486)
.+.|......+.....+|..+|.+=+++.+++..+...
T Consensus 359 ~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll~~ 396 (403)
T PF03209_consen 359 ALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLLGR 396 (403)
T ss_pred HHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998765544223347888988888887777766654
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3e-17 Score=155.28 Aligned_cols=371 Identities=20% Similarity=0.287 Sum_probs=243.3
Q ss_pred HHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHH
Q 011424 45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI 124 (486)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~ 124 (486)
...+-.+...+......+..+...+.++.+....+ ....+.-.....+...+.++..|.++||+|||..+.+......+
T Consensus 26 ~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~-~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l 104 (463)
T KOG2816|consen 26 LLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLEN-GLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTIL 104 (463)
T ss_pred HHHHHHHHHHhcCcchhhhhhhhhcccccCccchh-hhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHH
Confidence 34444444444444445555555555554433211 11122222233677889999999999999999999999999988
Q ss_pred HHHHHhccchHHHHHHHHHHHHhhccc---hhhHHHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccCC
Q 011424 125 FNTLFGLSVNFWMAVLTRFLLGSLNGL---LGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYP 201 (486)
Q Consensus 125 ~~~~~~~a~~~~~l~~~r~l~G~~~g~---~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~ 201 (486)
..+...+.. +|.+ + +.|+..+. .....++++|....++|....|+.+..+..+..++|.+++.+.+
T Consensus 105 ~~~~~~~~~-~~~~-~---~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~------ 173 (463)
T KOG2816|consen 105 PALCLLFQG-YWFF-L---LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVK------ 173 (463)
T ss_pred hHHHHHHHH-HHHh-h---hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH------
Confidence 888877766 3333 3 55654333 23348999999999999999999999999999999999999998
Q ss_pred cccccccccccCCChhhHHHHHHHHHHHH-HHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCCCccccccc
Q 011424 202 NLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLK 280 (486)
Q Consensus 202 ~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (486)
..+...++.+..+..++.. ....++||+....+++....... ... ....+...+........-.
T Consensus 174 ----------~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ 238 (463)
T KOG2816|consen 174 ----------FLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLREL--TPG---SLDSSHVADAFQSLTKVGP 238 (463)
T ss_pred ----------hcCchHHHHHHHHHHHHHHHHHhhccccccCcccccccccccc--CCC---cccchhhhhhhhhhcccCC
Confidence 4555666667666666654 55677898876544331000000 000 0000001111111122222
Q ss_pred chhhHHHHHHHHHHHhhhhh-hhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 011424 281 NWPLMSSIIVYCVFSLHDMA-YSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARI 359 (486)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (486)
+|..+......+........ .......|+. ..++++..+.+.+.+..+....+++.+..+.+.+.++.++.+..
T Consensus 239 ~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~-----~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~l 313 (463)
T KOG2816|consen 239 DRLLLLLLLVAFLSSLPEAGGASDVLLLYLK-----AKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISL 313 (463)
T ss_pred CccchHHHHHHHHHHHHHhcCceeEEEEEEe-----eecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhH
Confidence 33333333333332222111 1101122332 33899999999999999999999999888899999999888888
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhH
Q 011424 360 AGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGG 439 (486)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~ 439 (486)
+...-.+....+.+....+ .. ........+.....+...+..+..++++++|+++++...+..+.+.++|.+.
T Consensus 314 Gl~~~~~~~~~~af~~~~w-----~~--~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~ 386 (463)
T KOG2816|consen 314 GLLSEFLQLLLFAFATETW-----MM--FAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALY 386 (463)
T ss_pred HHHHHHHHHHHHHHhccch-----hh--hHHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHH
Confidence 8888777777777654322 11 1222233355677888999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCC
Q 011424 440 GALFSWAQKRLDASF 454 (486)
Q Consensus 440 g~l~~~~~~~~~~~~ 454 (486)
+.++..+.+...+..
T Consensus 387 ~~i~~~t~~~~~~~~ 401 (463)
T KOG2816|consen 387 GNIFALTLDDLPGFL 401 (463)
T ss_pred HHHHHHHHHhccccc
Confidence 999998877655543
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.7e-17 Score=155.41 Aligned_cols=362 Identities=14% Similarity=0.060 Sum_probs=216.2
Q ss_pred ChhHHHHHHHHHHHhhhhhhhhcccH-HHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhh----cCCch
Q 011424 39 PITELFSIWIIVLCTALPISSLFPFL-YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR----YGRKP 113 (486)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr----~Grr~ 113 (486)
++++.+.-.++.+...+........+ ..+.+..|+++.. +|.+..+.-+--++.-|+.|.++|| +||||
T Consensus 7 ~~~~k~~Yg~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~------~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~r 80 (460)
T PRK11462 7 SVKEKIGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGF------VGTMFLVARALDAISDPCMGLLADRTRSRWGKFR 80 (460)
T ss_pred cHhHHHhhccchhhhhHHHHHHHHHHHHHHHHhhCCCHHH------HHHHHHHHHHHHHHHhhhheehhccCCCCCCCcc
Confidence 33444444445544455555555444 4566778999988 9999999999999999999999995 79876
Q ss_pred hhh-HHHHHHHHHHHHHhccch------HHHHHHHHHHHHhhccchhh-HHHHHhhhcc-chhhhhHhhHHHHHhhhhHH
Q 011424 114 VII-MGTASVVIFNTLFGLSVN------FWMAVLTRFLLGSLNGLLGP-IKAYACEIFR-EEHQALGLSTVSTAWGIGLI 184 (486)
Q Consensus 114 ~l~-~~~~~~~~~~~~~~~a~~------~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~ 184 (486)
..+ ++.+..+++.+++-..|+ +..+.+.-++..++...... -.++.+|..+ ++||.+..++...+..+|..
T Consensus 81 p~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~ 160 (460)
T PRK11462 81 PWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGM 160 (460)
T ss_pred hhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 665 566777777766554442 34455566666776555444 4888899887 78999999999999999988
Q ss_pred HHhhhhhhhcccCccCCcccccccccccCCChhhHHHHHHHHHHHHH-HHHhcCCcccCCCCCCCcccchhhhccccccc
Q 011424 185 IGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAE 263 (486)
Q Consensus 185 ig~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (486)
+++.+...+.+ .+|.+. - ..+|+....+.++++++... .....+|.++.++++
T Consensus 161 ~~~~~~~plv~-------~~g~~~-~-~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~~~~~----------------- 214 (460)
T PRK11462 161 LSTVLMMPLVN-------LIGGDN-K-PLGFQGGIAVLSVVAFMMLAFCFFTTKERVEAPPTT----------------- 214 (460)
T ss_pred HHHHHHHHHHH-------HhCCCc-h-hhhHHHHHHHHHHHHHHHHHHHHhcceeccCCCccC-----------------
Confidence 88888766655 222110 0 23455444444444444332 233344432211000
Q ss_pred hhhhcccCCCcccccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHH
Q 011424 264 VKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSL 343 (486)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 343 (486)
.+.....+..++||.++......++.............+|.... .+ +....+.+.....+.++++.. +
T Consensus 215 -----~~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~-----~g-~~~~~~~~l~~~~i~~iig~~-l 282 (460)
T PRK11462 215 -----TSMREDLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWI-----LG-TPEVFVAFLTTYCVGNLIGSA-L 282 (460)
T ss_pred -----CCHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhh-----cC-ChHHHHHHHHHHHHHHHHHHH-H
Confidence 00112355678888887766555555444334333333333322 22 223344556666777777776 6
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccc-------cCc
Q 011424 344 YPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVD-------QDQ 416 (486)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 416 (486)
++++.||+++|+....+..+..+...++.+... ..... ..+..++.+.+.....+..+++..|..+ .+.
T Consensus 283 ~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~ 358 (460)
T PRK11462 283 AKPLTDWKCKVTIFWWTNALLAVISLAMFFVPM---QASIT-MFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRL 358 (460)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHHHHHhch---hHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCc
Confidence 677777888887765444433332222222211 11111 1122222333444444555666666554 333
Q ss_pred hhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhh
Q 011424 417 RGAANGIAMTGMSLFKAAGPAGGGALFSWAQK 448 (486)
Q Consensus 417 ~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~ 448 (486)
.|...+.......+|.++++.+.|.+++..+.
T Consensus 359 ~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 359 TGISFAGTLFVLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45556777788999999999999999987643
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.7e-17 Score=148.41 Aligned_cols=404 Identities=13% Similarity=0.113 Sum_probs=247.3
Q ss_pred hHHHHHHHHHHHhhhhhhhhcccH-HHHHHHhc----ccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhc-CCchh
Q 011424 41 TELFSIWIIVLCTALPISSLFPFL-YFMIKDFQ----IAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-GRKPV 114 (486)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~-Grr~~ 114 (486)
+.++.++..-+..-++++.+...+ -++..+++ .++++ ..-+.++|..-.-+..+++|+++||+ |+|++
T Consensus 21 r~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~------A~~l~~~y~slVY~t~i~GG~laDr~LG~~~t 94 (498)
T COG3104 21 RGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETH------ATGLFSAYGSLVYLTPIIGGWLADRVLGTRRT 94 (498)
T ss_pred chHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHh------hHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Confidence 447777788888888876665555 45666666 88877 66667777666668889999999996 99999
Q ss_pred hhHHHHHHHHHHHHHhcc--chHHHHHHHHHHHHhhccchhhH-HHHHhhhccch--hhhhHhhHHHHHhhhhHHHHhhh
Q 011424 115 IIMGTASVVIFNTLFGLS--VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREE--HQALGLSTVSTAWGIGLIIGPAL 189 (486)
Q Consensus 115 l~~~~~~~~~~~~~~~~a--~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~ig~~l 189 (486)
++.+.++..++.++.+.+ .+...++++-++.++|.|..-+. .++++|.+|++ +|...++++..+.++|+.++|.+
T Consensus 95 I~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i 174 (498)
T COG3104 95 IVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPII 174 (498)
T ss_pred HHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHH
Confidence 999999999999999988 47889999999999999999885 99999999854 47788999999999999999999
Q ss_pred hhhhcccCccCCcccccccccccCCChhhHHHHHHHHHHHHHHHHhcCCcccCCCC----CCCcccchh-----------
Q 011424 190 GGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHND----DDDSCDVSY----------- 254 (486)
Q Consensus 190 ~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~----~~~~~~~~~----------- 254 (486)
.+++.+ .+| |...|...++-....++.....+........ ........+
T Consensus 175 ~~~~~~-------~~g---------~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (498)
T COG3104 175 TGLLAI-------NYG---------WHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMIL 238 (498)
T ss_pred HHHHHH-------hhC---------HHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHH
Confidence 999998 444 4444455555555544444444432221111 111111000
Q ss_pred hhc-cccccchh--h---------hc--ccCCCcccccccch-hhH---HHHHHHHHHHhhhhhhhHHHHHhhcCccccC
Q 011424 255 DAL-ESASAEVK--E---------EE--GREATPKKSLLKNW-PLM---SSIIVYCVFSLHDMAYSEIFSLWANSPKKLG 316 (486)
Q Consensus 255 ~~~-~~~~~~~~--~---------~~--~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (486)
... -.....+. . .. -.+.....+...+| +.+ .+.+...++........+.+..|..+....+
T Consensus 239 ~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~ 318 (498)
T COG3104 239 AALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVFDERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQ 318 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhccc
Confidence 000 00000000 0 00 00000011111111 222 2222222222222223334444544432222
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHH--hhhh----HHHHHHHHHHHHHHHHHHHHHHhh----hhhhHHHHH
Q 011424 317 GLNYSTQMVGEVLAITGFSLLVFQLSLYPFLER--ILGP----IMVARIAGVLTIPLLTSYPYIAML----SGFGLAFLL 386 (486)
Q Consensus 317 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 386 (486)
-+|++ ....+..+...+.-++.+++......+ +.++ +.-...+..++..+.+++...... .+..+..+.
T Consensus 319 ~~g~~-vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~l 397 (498)
T COG3104 319 IFGFE-VPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWL 397 (498)
T ss_pred cccee-cCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHH
Confidence 23322 234566777777777777766666655 2111 222344555555555555443111 223344556
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHH------HHHHHhhhcCCCCCCchhH
Q 011424 387 NCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGA------LFSWAQKRLDASFLPGSQM 460 (486)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~------l~~~~~~~~~~~~~~g~~~ 460 (486)
+...++.+++.....|...+++.+..|+...+..+++.......++.++..+.+. ..+.. ....
T Consensus 398 il~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~----------~~~~ 467 (498)
T COG3104 398 VLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAF----------IEGR 467 (498)
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhh----------hhhh
Confidence 6666777888888899999999999999999999998888888888877777663 12221 3455
Q ss_pred HHHHHHHHHHHHHHHhh
Q 011424 461 VFFVLNVVEAIGVLMTF 477 (486)
Q Consensus 461 ~f~~~~~~~~~~~~~~~ 477 (486)
.|..++...++..+..+
T Consensus 468 ~F~~~g~v~i~~~~~~~ 484 (498)
T COG3104 468 VFGTIGVVAIVIGILLL 484 (498)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 66666666665554433
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.2e-19 Score=173.17 Aligned_cols=392 Identities=16% Similarity=0.178 Sum_probs=2.9
Q ss_pred HHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHH
Q 011424 45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI 124 (486)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~ 124 (486)
.+.+..+...+..+.....++.+.+.|+++.++ .|++.+.+-++..+..++..++.+|..|-|.+-++.++.++
T Consensus 7 ~~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~------~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~ 80 (539)
T PF03137_consen 7 FLCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQ------SGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGL 80 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHH
Confidence 344455555666677777888999999999999 99999999999999999999999998888888899999999
Q ss_pred HHHHHhcc----c----------------------------------------------hHHHHHHHHHHHHhhccchhh
Q 011424 125 FNTLFGLS----V----------------------------------------------NFWMAVLTRFLLGSLNGLLGP 154 (486)
Q Consensus 125 ~~~~~~~a----~----------------------------------------------~~~~l~~~r~l~G~~~g~~~~ 154 (486)
+++++++- + -+..++++.++.|+|.....+
T Consensus 81 g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~t 160 (539)
T PF03137_consen 81 GSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYT 160 (539)
T ss_dssp -----------------------------------------------------------------------SSS------
T ss_pred HHHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCcc
Confidence 99887651 0 135688899999999999988
Q ss_pred H-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccCCc------ccc-cccccccCCChhhHHHHHHHH
Q 011424 155 I-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPN------LFS-SESLFGKFPYFLPCLCISLFA 226 (486)
Q Consensus 155 ~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~~------~~g-w~~~~~~~~~~~~~~~~~~~~ 226 (486)
. .+|+-|..++++-+..+|+..+...+|.++|-++++.+......++. ... .+.-| -..||+.+++.+...
T Consensus 161 LG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~W-vGAWWLGfli~g~~~ 239 (539)
T PF03137_consen 161 LGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRW-VGAWWLGFLICGILL 239 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccH-HHHHHHHHHHHHHHH
Confidence 6 99999999999999999999999999999999999988764221110 111 11112 345788888888777
Q ss_pred HHHHHHHHhcCCcccCCCCCCCccc----chhhhccccccchh------hhcccCCCcccccccchhhHHHHHHHHHHHh
Q 011424 227 FGVTIAAFWLPETLHRHNDDDDSCD----VSYDALESASAEVK------EEEGREATPKKSLLKNWPLMSSIIVYCVFSL 296 (486)
Q Consensus 227 ~~~~~~~~~~~e~~~~~~~~~~~~~----~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (486)
++..+.++.+|+..+..++.+++.+ ...+..++..++++ +..++-+...+++++||.+....+.......
T Consensus 240 ~l~aipl~~FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~ 319 (539)
T PF03137_consen 240 FLSAIPLFFFPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESF 319 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHcCCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 7777777777766544411111110 00000001111111 1123345567889999999888888888888
Q ss_pred hhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHH---H
Q 011424 297 HDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG--PIMVARIAGVLTIPLLTS---Y 371 (486)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~ 371 (486)
...++.++.|-|++.. ++.++.+++++.....+.+...+.++++++.||++ .|.......+...+..+. .
T Consensus 320 ~~~G~~tF~pKylE~Q-----F~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~ 394 (539)
T PF03137_consen 320 IVSGFATFLPKYLESQ-----FGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPL 394 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHH-----hCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888766654 89999999998877777665555568888888764 344444433333332222 1
Q ss_pred HHH------------Hhh---------------------------h-----h-hhHHHHHHHHHHHHhhhhhhhhhhhhh
Q 011424 372 PYI------------AML---------------------------S-----G-FGLAFLLNCASVVKNLLSVSIITGLFI 406 (486)
Q Consensus 372 ~~~------------~~~---------------------------~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (486)
.+. .+. . + ........+..++..+...........
T Consensus 395 ~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~ 474 (539)
T PF03137_consen 395 FFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTL 474 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchhe
Confidence 111 000 0 0 001122222223333333333444445
Q ss_pred hhhhccccCchhhHHhHHHHH-HHHHHHHHhhhHHHHHHHHhh
Q 011424 407 LQNRAVDQDQRGAANGIAMTG-MSLFKAAGPAGGGALFSWAQK 448 (486)
Q Consensus 407 ~~~~~~~~~~~g~~~g~~~~~-~~~g~~~~~~~~g~l~~~~~~ 448 (486)
+.-+.+|+++|+.+.|+...+ +-+|.+-+|.++|.+.|...-
T Consensus 475 i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~tCl 517 (539)
T PF03137_consen 475 ITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDSTCL 517 (539)
T ss_dssp -------------------------------------------
T ss_pred eeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhhhhh
Confidence 556779999999999999866 567889999999999998643
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-15 Score=148.29 Aligned_cols=394 Identities=16% Similarity=0.166 Sum_probs=284.7
Q ss_pred HHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHH
Q 011424 44 FSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVV 123 (486)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~ 123 (486)
..+.+..+...+....+...+..+.+.|+++.++ .|++.+.+-++..+...+..+..-|.-|-+.+-+++++++
T Consensus 100 ~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~------sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~ 173 (735)
T KOG3626|consen 100 VLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQ------SGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMG 173 (735)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCc------ceeEeeecccchhhhhHhHHHhccccCccceeeechhHHH
Confidence 3556667777777788888889999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHhcc--------------------c--------------------------------hHHHHHHHHHHHHhhccc
Q 011424 124 IFNTLFGLS--------------------V--------------------------------NFWMAVLTRFLLGSLNGL 151 (486)
Q Consensus 124 ~~~~~~~~a--------------------~--------------------------------~~~~l~~~r~l~G~~~g~ 151 (486)
++++++++- + -+..++++.++.|+|...
T Consensus 174 lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tp 253 (735)
T KOG3626|consen 174 LGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATP 253 (735)
T ss_pred HHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCC
Confidence 999998751 0 022577888999999999
Q ss_pred hhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccC-Cccccc---ccccccCCChhhHHHHHHHH
Q 011424 152 LGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY-PNLFSS---ESLFGKFPYFLPCLCISLFA 226 (486)
Q Consensus 152 ~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~-~~~~gw---~~~~~~~~~~~~~~~~~~~~ 226 (486)
..+. .+|+-|...+++-+..+|+..+...+|.++|-++++++......+ ....+- ..-| --.||.-+++.+.+.
T Consensus 254 i~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrW-IGAWWlGFLi~g~~~ 332 (735)
T KOG3626|consen 254 IFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRW-IGAWWLGFLICGALL 332 (735)
T ss_pred CccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcch-hhHHHHHHHHHHHHH
Confidence 9886 999999999999999999999999999999999999998743322 111111 1112 446889999999888
Q ss_pred HHHHHHHHhcCCcccCCCCCCCcccchhhhcccc-ccchhh---hcccCCCcccccccchhhHHHHHHHHHHHhhhhhhh
Q 011424 227 FGVTIAAFWLPETLHRHNDDDDSCDVSYDALESA-SAEVKE---EEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYS 302 (486)
Q Consensus 227 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (486)
++..+.++++|.+.++..++.+..+....+.++. .++... .-++-+...+++++||.+...++...+......++.
T Consensus 333 ~~~a~p~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~ 412 (735)
T KOG3626|consen 333 LFSAVPLFFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYI 412 (735)
T ss_pred HHHHHHHHhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHH
Confidence 8888888888887665433211111110000000 000000 112234566788999999999999999888888998
Q ss_pred HHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHH---HHHH--
Q 011424 303 EIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG--PIMVARIAGVLTIPLLTSY---PYIA-- 375 (486)
Q Consensus 303 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~-- 375 (486)
++.|-|+.+. +|.++..+..+....++.....+.++++++.+|++ .|....+.+....+.++.+ .+..
T Consensus 413 tFlPKyLE~Q-----fg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~~~~~~~igC~ 487 (735)
T KOG3626|consen 413 TFLPKYLETQ-----FGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLFYSLLFFIGCE 487 (735)
T ss_pred HhhHHHHHHH-----cCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHHHHHHHEecCC
Confidence 8888887655 89999999999988888888777778888888754 3444444444444433331 1110
Q ss_pred ------------------h-h-----------------------------------------hh----------------
Q 011424 376 ------------------M-L-----------------------------------------SG---------------- 379 (486)
Q Consensus 376 ------------------~-~-----------------------------------------~~---------------- 379 (486)
. . .+
T Consensus 488 ~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~~~~~~ytnCsCv~~~~ 567 (735)
T KOG3626|consen 488 SSPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTSDGNTIYTNCSCVPTNK 567 (735)
T ss_pred CCcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCCCCceeecccccccccc
Confidence 0 0 00
Q ss_pred ---------------hhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHH-HHHHHHHHhhhHHHHH
Q 011424 380 ---------------FGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTG-MSLFKAAGPAGGGALF 443 (486)
Q Consensus 380 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~-~~~g~~~~~~~~g~l~ 443 (486)
......+++..++..+......+....++.+.+|+++|..++|+..++ +-+|.+-+|.++|+++
T Consensus 568 ~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~ks~AlG~~~~~irllg~IPsPIifG~~I 647 (735)
T KOG3626|consen 568 NGNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEEKSFALGFQWMLIRLLGFIPSPIIFGAVI 647 (735)
T ss_pred CCCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcceEEEEEccCchhchhhhHHHHHHHHHHhcCCchHhhhhhH
Confidence 011223334444444455555556667777889999999999999866 5688899999999999
Q ss_pred HHHhhh
Q 011424 444 SWAQKR 449 (486)
Q Consensus 444 ~~~~~~ 449 (486)
|...-.
T Consensus 648 D~tCl~ 653 (735)
T KOG3626|consen 648 DTTCLL 653 (735)
T ss_pred hhHHHH
Confidence 976543
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-13 Score=122.38 Aligned_cols=266 Identities=16% Similarity=0.143 Sum_probs=171.1
Q ss_pred HHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHH
Q 011424 49 IVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTL 128 (486)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~ 128 (486)
.+.+...+....+|.+-.+-+++|.++.| ++.+....+....+..++.|.++||+|||+.-++.+++.+++++.
T Consensus 42 vY~La~~aDWLQGpY~Y~LY~~yg~~~~q------Ia~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~ 115 (354)
T PF05631_consen 42 VYLLAMAADWLQGPYLYALYESYGFSEHQ------IAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT 115 (354)
T ss_pred HHHHHHHHHHhhcchhHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 34445556677788887777899999999 999999999999999999999999999999999999999888864
Q ss_pred HhccchHHHHHHHHHHHHhhccchhhH-HH-HHhhhc----cchhhhhHhhHHH-HHhhhhHHHHhhhhhhhcccCccCC
Q 011424 129 FGLSVNFWMAVLTRFLLGSLNGLLGPI-KA-YACEIF----REEHQALGLSTVS-TAWGIGLIIGPALGGFLAQPAEKYP 201 (486)
Q Consensus 129 ~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~-~i~~~~----~~~~r~~~~~~~~-~~~~~g~~ig~~l~~~l~~~~~~~~ 201 (486)
-..++++.++++|++.|++......+ -+ ++.|.- |++..+..++... ...++-.+++..++.++.+
T Consensus 116 -k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~------ 188 (354)
T PF05631_consen 116 -KHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLAD------ 188 (354)
T ss_pred -HhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHH------
Confidence 44689999999999999999888776 44 455653 3333333333333 2333444555556666655
Q ss_pred cccccccccccCCChhhHHHHHHHHHHHHHH-HHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCCCccccccc
Q 011424 202 NLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLK 280 (486)
Q Consensus 202 ~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (486)
..| .+-..|+.......++..+. ....+|+.....++.+..+ +.....+.+.+
T Consensus 189 -~~~-------~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~~~~~~~~~~------------------~~~~a~~~i~~ 242 (354)
T PF05631_consen 189 -WFG-------FGPVAPFDAAIVLLAVAAVLILKTWPENYGDTSSSSSLSG------------------SFREAWRAILS 242 (354)
T ss_pred -HhC-------CCCcchHHHHHHHHHHHHHHHHhcccccCCCcccccchHH------------------HHHHHHHHHHc
Confidence 111 12244556655555554433 3345665443221111111 01123456778
Q ss_pred chhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 011424 281 NWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIA 360 (486)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (486)
||+++.+.++..++-...+.+ .++..|.... +-...-.|++++...+..++|+.+......++.+....+...
T Consensus 243 d~ril~LG~~qslFE~smy~F-----VflWtPaL~~--~~~~~P~GlIFssFM~a~MlGS~lf~~l~s~~~~~e~~l~~v 315 (354)
T PF05631_consen 243 DPRILLLGLIQSLFEGSMYLF-----VFLWTPALDP--DDEELPLGLIFSSFMVAMMLGSSLFSRLLSKSLRPESLLRYV 315 (354)
T ss_pred CchhHHHHHHHHHHHHHHHHh-----eeeeeceecC--CCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 899888877777765544433 2233333321 112334799999999999999985556666664444444333
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.1e-14 Score=140.97 Aligned_cols=173 Identities=15% Similarity=0.233 Sum_probs=125.2
Q ss_pred HHhhhhhhhhcccHHHHH-HHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHH-
Q 011424 51 LCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTL- 128 (486)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~- 128 (486)
+......+.....+|.+. +++|.+..+ .++..+...++..++.++.|+++||+|||+++.++.++..+....
T Consensus 260 ~~~~~~~~~~~~~~p~~l~~~~g~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~ 333 (490)
T PRK10642 260 IATNVTYYMLLTYMPSYLSHNLHYSEDH------GVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPA 333 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 333444555556677665 567888776 777888888999999999999999999999988887654433322
Q ss_pred --HhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccCCcccc
Q 011424 129 --FGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFS 205 (486)
Q Consensus 129 --~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~~~~g 205 (486)
...+++...++++|++.|++.+..... ..++.|.+|++.|+++++.......++..++|.+.+++.+ ..
T Consensus 334 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~-------~~- 405 (490)
T PRK10642 334 FILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVE-------ST- 405 (490)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH-------Hh-
Confidence 223456788889999999876655444 7888899999999999997544455667788998888876 11
Q ss_pred cccccccCCChhhHHHHHHHHHHHHHHHHhcCCcccCCC
Q 011424 206 SESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHN 244 (486)
Q Consensus 206 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 244 (486)
..|+.++....+.+++.++..+++||++++..
T Consensus 406 -------~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~ 437 (490)
T PRK10642 406 -------QNLMMPAYYLMVVAVIGLITGVTMKETANRPL 437 (490)
T ss_pred -------CCchHHHHHHHHHHHHHHHHHHHhccccCCCC
Confidence 12455555555666666666677899988754
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-14 Score=139.74 Aligned_cols=183 Identities=12% Similarity=0.136 Sum_probs=130.8
Q ss_pred HHHhhhhhhhhcccHHHHHHHhcccccch--hhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHH
Q 011424 50 VLCTALPISSLFPFLYFMIKDFQIAKREE--DIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNT 127 (486)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~ 127 (486)
.++............|.+.++.+.++.+. ......+...++..++..++.++.|+++||+|||+++.++.++.+++..
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~ 296 (418)
T TIGR00889 217 SMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFG 296 (418)
T ss_pred HHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 33333333344455577777777554210 0001179999999999999999999999999999999999999988876
Q ss_pred HHhcc-c---hHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHH-HHhhhhHHHHhhhhhhhcccCccCC
Q 011424 128 LFGLS-V---NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVS-TAWGIGLIIGPALGGFLAQPAEKYP 201 (486)
Q Consensus 128 ~~~~a-~---~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~ig~~l~~~l~~~~~~~~ 201 (486)
+...+ + +++.+++.+++.|++.+...+. ..++.|++|+++|++++++.+ ...++|.++||+++|++.+..++.
T Consensus 297 l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~- 375 (418)
T TIGR00889 297 FFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAY- 375 (418)
T ss_pred HHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc-
Confidence 66653 2 3567788899999998887776 889999999999999999997 678899999999999999821100
Q ss_pred cccccccccccCCChhhHHHHHHHHHHH-HHHHHhcCCcccC
Q 011424 202 NLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHR 242 (486)
Q Consensus 202 ~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~ 242 (486)
..+| |+..+.+.++..++. ++..+++||+.+.
T Consensus 376 ~~~~---------~~~~f~~~~~~~~i~~~l~~~~~~~~~~~ 408 (418)
T TIGR00889 376 GTFD---------WQTMWLFFAGYIAILAVLFMIFFKYSHNA 408 (418)
T ss_pred cCCc---------hHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 0123 444445555554443 4555667776443
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.2e-14 Score=144.01 Aligned_cols=140 Identities=14% Similarity=0.096 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhc
Q 011424 85 GYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIF 163 (486)
Q Consensus 85 g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~ 163 (486)
.+...+..++.+++.++.|+++||+|||++++++.++.+++.++.+++++...+++.+++.|++.+...+. .++++|++
T Consensus 598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~ 677 (742)
T TIGR01299 598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY 677 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44456777899999999999999999999999999999999999999988888889999888876666665 89999999
Q ss_pred cchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccCCcccccccccccCCChhhHHHHHHHHHHHHHHHHhcCCccc
Q 011424 164 REEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLH 241 (486)
Q Consensus 164 ~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 241 (486)
|.++|++++|+.++...+|.+++|.+++.+.+ . ....++++.++..++..++..++||+..
T Consensus 678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~----------------~-~~~~pf~i~a~~lll~~ll~~~LPET~~ 738 (742)
T TIGR01299 678 PSDKRATAFGFLNALCKAAAVLGILIFGSFVG----------------I-TKAAPILFASAALACGGLLALKLPDTRG 738 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------h-hhHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 99999999999999999999999999998875 1 1345556666666666666667788764
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.6e-14 Score=116.49 Aligned_cols=108 Identities=32% Similarity=0.582 Sum_probs=100.2
Q ss_pred HHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccch
Q 011424 88 GSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREE 166 (486)
Q Consensus 88 ~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~ 166 (486)
.+.+.++..+++++.|++.||+|||+.+..+..+..++.+....+++++.+.+.+++.|++.+...+. .+++.|.+|++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 45567788999999999999999999999999999999998888999999999999999998887776 89999999999
Q ss_pred hhhhHhhHHHHHhhhhHHHHhhhhhhhcc
Q 011424 167 HQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (486)
Q Consensus 167 ~r~~~~~~~~~~~~~g~~ig~~l~~~l~~ 195 (486)
+|++..+..+....+|..++|.+++.+.+
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 112 (141)
T TIGR00880 84 ERGVALGLMSAGIALGPLLGPPLGGVLAQ 112 (141)
T ss_pred hhhHHHHHHHHhHHHHHHHhHHhHHHHhc
Confidence 99999999999999999999999999987
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.9e-13 Score=130.80 Aligned_cols=387 Identities=16% Similarity=0.194 Sum_probs=223.2
Q ss_pred cccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhc---C--CchhhhHHHHHHHHHHHHHhcc---
Q 011424 61 FPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY---G--RKPVIIMGTASVVIFNTLFGLS--- 132 (486)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~---G--rr~~l~~~~~~~~~~~~~~~~a--- 132 (486)
.+..|.+.+++|.++.+ .....+...+.. ..-++.|.++|-+ | ||+-++++.++..++.+..+..
T Consensus 10 ~~~~~~l~~~l~ls~~~------~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~ 82 (433)
T PF03092_consen 10 LAIYPFLKDDLGLSPAQ------LQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPAS 82 (433)
T ss_pred HHHHHHHHHHcCCCHHH------HHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccc
Confidence 34567889999999999 888888877776 4567899999976 3 4555566777766655555543
Q ss_pred -chHHHHHHHHHHHHhhccchhhH-HHHHhhhcc--chhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccCCccccccc
Q 011424 133 -VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFR--EEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSES 208 (486)
Q Consensus 133 -~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~--~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~~~~gw~~ 208 (486)
.+.....+.-++..+|......+ -+++.|... +++|+...+.......+|.+++..++|.+.+ ..+.+.
T Consensus 83 ~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~-------~~~~~~ 155 (433)
T PF03092_consen 83 ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLD-------SFGPQG 155 (433)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhh-------cCCCeE
Confidence 35666666667777887777775 888888874 3447888888888999999999999999988 444444
Q ss_pred ccccCCChhhHHHHHHHHHHHHH-HHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCCCcccccccchhhHHH
Q 011424 209 LFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSS 287 (486)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (486)
.| .+..+...+..+ ..+..+| ++..+..+ ..... ++ .........++.....++.++.+.++..
T Consensus 156 ~f---------~i~~~~~~l~~~~~~~~~~e-~~~~~~~~-~~~~~-~~---~~~~~~~~~~~~~~~l~~~~~~~~i~~~ 220 (433)
T PF03092_consen 156 VF---------LISAALPLLMLIVALFLLEE-RKVRPADE-VFSFG-KE---EVPCLFGSFREQLSELWRALQQRAIWQP 220 (433)
T ss_pred Ee---------hHHHHHHHHHHHHHHHhhhh-ccccccch-hhccc-cc---ccchhhHHHHHHHHHHHHHHhhhHHHHH
Confidence 44 444444444433 3444444 22211110 00000 00 0000000011122344566677777766
Q ss_pred HH-HHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 011424 288 II-VYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIP 366 (486)
Q Consensus 288 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (486)
.+ ..++........... ..|.... ...+.++++...+.+..+..++.+++.....++..++ .-|++.....++..+
T Consensus 221 ~~~~~~~~~~~~~~~~a~-~fy~~~~-~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~-~~R~~~~~t~~~~~~ 297 (433)
T PF03092_consen 221 ILFFIFFFNLPPSISSAS-SFYFQTD-ALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNW-SWRRIFVVTTLVSVL 297 (433)
T ss_pred HHHHHHHHHhccCCCCcc-EEEEEec-cccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 55 333322221111110 0111111 1113448888888888777777777776444554443 556665555444333
Q ss_pred HHHHHHHHHhhhh----hhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHH
Q 011424 367 LLTSYPYIAMLSG----FGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGAL 442 (486)
Q Consensus 367 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l 442 (486)
..+.-.......+ .........-..+.........-......+|+.|+..-|+.+++..++.++|..++..+...+
T Consensus 298 ~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l 377 (433)
T PF03092_consen 298 ASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFL 377 (433)
T ss_pred HhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221111100000 000001111112222222233333455678889999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhcccccc
Q 011424 443 FSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQ 483 (486)
Q Consensus 443 ~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~ 483 (486)
.+..+-.... +.+.....++..++.++...+..+ +|+
T Consensus 378 ~~~~~vt~~~--f~~l~~lili~~~~~ll~l~ll~l--Lp~ 414 (433)
T PF03092_consen 378 MELFGVTRDD--FSNLWLLILICSVIQLLPLPLLFL--LPP 414 (433)
T ss_pred HHHcCCCccc--ccchHHHHHHHHHHHHHHHHHHHH--cCC
Confidence 8887532222 224556666667777666666655 444
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-13 Score=131.75 Aligned_cols=158 Identities=15% Similarity=0.200 Sum_probs=123.5
Q ss_pred hhhcccHHHH-HHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHhccchHH
Q 011424 58 SSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFW 136 (486)
Q Consensus 58 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~ 136 (486)
..+....|.+ .+++|.++.+ .+++.+...++..++.++.|+++||+|||+.+..+.+...+.......+++.+
T Consensus 233 ~~~~~~~p~~l~~~~~~~~~~------~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (393)
T PRK15011 233 SLYIINMPLFIINELHLPEKL------AGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPA 306 (393)
T ss_pred HHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3344456644 5678998887 88888887788888999999999999999988877766665555555677888
Q ss_pred HHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccCCcccccccccccCCC
Q 011424 137 MAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPY 215 (486)
Q Consensus 137 ~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~~~~gw~~~~~~~~~ 215 (486)
.+++.+++.+++.|...+. ..+..|.+|+ +|+++++.++...++|..++|.+++.+.+ .++|
T Consensus 307 ~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~----------------~~g~ 369 (393)
T PRK15011 307 ILLGLQLLNAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAE----------------IWNY 369 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHH----------------Hhhh
Confidence 8888999988877766554 7778898885 59999999999999999999999999998 3445
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCC
Q 011424 216 FLPCLCISLFAFGVTIAAFWLPE 238 (486)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~e 238 (486)
+..+.+..+..++.++..++.||
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 370 HAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcC
Confidence 55556667777777777666665
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-13 Score=132.01 Aligned_cols=163 Identities=19% Similarity=0.167 Sum_probs=128.3
Q ss_pred hhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHhccch
Q 011424 55 LPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVN 134 (486)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~ 134 (486)
+........+|.+.++.+.+ + .++..+.+.++..++.++.|++.||+|||+.+..+..+.+++.++..+.++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (399)
T PRK05122 230 IGFGTIATFITLYYAARGWD--G------AALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPS 301 (399)
T ss_pred HHHHHHHHHHHHHHHHcccc--c------chHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33444445566666666653 3 566677888899999999999999999999999998888888888888888
Q ss_pred HHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccCCcccccccccccC
Q 011424 135 FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKF 213 (486)
Q Consensus 135 ~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~~~~gw~~~~~~~ 213 (486)
.+.+++.+++.|++.+...+. ...+.|..|+++|+++.++++....+|..+++++.+.+.+ ..
T Consensus 302 ~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~----------------~~ 365 (399)
T PRK05122 302 PWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVAS----------------WF 365 (399)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------Hc
Confidence 888899999999998877775 7778899999999999999999999999999999999988 33
Q ss_pred CChhhHHHHHHHHHHHHHHHHhcCCccc
Q 011424 214 PYFLPCLCISLFAFGVTIAAFWLPETLH 241 (486)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 241 (486)
+|+..+...++..++.++....++++++
T Consensus 366 g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (399)
T PRK05122 366 GYPSIFLAAALAALLGLALTWLLYRRAP 393 (399)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 4455556666666666555555555433
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-13 Score=132.88 Aligned_cols=140 Identities=21% Similarity=0.274 Sum_probs=118.4
Q ss_pred HHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHH
Q 011424 50 VLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLF 129 (486)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~ 129 (486)
.+.............|.+.++.|.++.+ .+.+.+...++..++.++.|+++||+|||+.+..+.+...++.++.
T Consensus 229 ~~~~~~~~~~~~~~~p~~~~~~g~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~ 302 (406)
T PRK11551 229 YFFTLIVLYFLLNWLPSLLVGQGLSRSQ------AGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAAL 302 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3333333444455678888889999888 9999999999999999999999999999999988877777777777
Q ss_pred hccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcc
Q 011424 130 GLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (486)
Q Consensus 130 ~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~ 195 (486)
.+.++.+.+.+..++.|++.+...+. .+++.|.+|+++|++.+++.+....+|..++|.+++.+.+
T Consensus 303 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~ 369 (406)
T PRK11551 303 AAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLA 369 (406)
T ss_pred HhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhc
Confidence 77788888888888888876665665 8899999999999999999999999999999999999987
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.55 E-value=7e-14 Score=133.06 Aligned_cols=144 Identities=13% Similarity=0.034 Sum_probs=117.0
Q ss_pred HHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHH
Q 011424 46 IWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF 125 (486)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~ 125 (486)
.....+.............+.+.++++.++.+ .+++.+.+.++..++.++.|+++||+|||+.+.++.++..++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~ 283 (377)
T TIGR00890 210 LYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGF------LVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVG 283 (377)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 33333333343334444556677888988877 899999999999999999999999999999999999998888
Q ss_pred HHHHhccchH--HHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcc
Q 011424 126 NTLFGLSVNF--WMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (486)
Q Consensus 126 ~~~~~~a~~~--~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~ 195 (486)
.++..+.++. ..+++..++.|++.+...+. ..++.|.+|+++|+++.|+.+....+|..++|.+.+.+.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 356 (377)
T TIGR00890 284 MAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALT 356 (377)
T ss_pred HHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8877776643 33456678888887776665 8889999999999999999999999999999999999988
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.7e-14 Score=136.79 Aligned_cols=140 Identities=19% Similarity=0.134 Sum_probs=114.7
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhh
Q 011424 84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEI 162 (486)
Q Consensus 84 ~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~ 162 (486)
.|++.++..++..++.+++|++.||+|||+.+.++.++.+++.++.++++|.+.+++.+++.|++.+...+. ..++.|.
T Consensus 264 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 343 (420)
T PRK09528 264 FGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLN 343 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999888899999999999999999987776664 8899999
Q ss_pred ccchhhhhHhhH-HHHHhhhhHHHHhhhhhhhcccCccCCcccccccccccCCChhhHHHHHHHHHHHH-HHHHhcCCc
Q 011424 163 FREEHQALGLST-VSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPET 239 (486)
Q Consensus 163 ~~~~~r~~~~~~-~~~~~~~g~~ig~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~ 239 (486)
+|++.|++..+. ++....+|.+++|.+.|++.+ .+||+ ..+...++..++.. +....++++
T Consensus 344 ~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~-------~~G~~---------~~f~~~~~~~~i~~~~~~~~~~~~ 406 (420)
T PRK09528 344 FDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYD-------SIGFQ---------GTYLILGGIVLLFTLISVFTLSGD 406 (420)
T ss_pred cCccceeeeeeehHHHHHHHHHHHHHHHHHHHHH-------hhCch---------HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999887665 677788999999999999998 44444 44455555554433 333444443
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.53 E-value=3e-13 Score=128.67 Aligned_cols=148 Identities=12% Similarity=0.064 Sum_probs=129.9
Q ss_pred hHHHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHH
Q 011424 41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA 120 (486)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~ 120 (486)
++++...+..++.......+....|.+.+|+|.++.+ .|++.++..++..++.++.+++.||+|+|+.+.++.+
T Consensus 205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~------~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~ 278 (382)
T TIGR00902 205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQAAGISASA------TGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAI 278 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhH------HHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHH
Confidence 3445445555555566666667778778889999988 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHH-HHhhhhHHHHhhhhhhhcc
Q 011424 121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVS-TAWGIGLIIGPALGGFLAQ 195 (486)
Q Consensus 121 ~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~ig~~l~~~l~~ 195 (486)
...+..++.++++|++.+++.+++.|+..+...++ ..++.+. |+++|++..++++ ...++|..++|.++|++.+
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~ 354 (382)
T TIGR00902 279 ACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYP 354 (382)
T ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998886 8899988 9999999999886 5788999999999999998
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.8e-13 Score=125.98 Aligned_cols=163 Identities=22% Similarity=0.316 Sum_probs=137.3
Q ss_pred HHHhhhhhhhhcccHHHHHHHh-cccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCch-hhhHHHHHHHHHHH
Q 011424 50 VLCTALPISSLFPFLYFMIKDF-QIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKP-VIIMGTASVVIFNT 127 (486)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~-~l~~~~~~~~~~~~ 127 (486)
.+.............|.+.++. |.++.+ .++..+...++..++.++.|++.||+|||+ .+..+..+..++.+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 257 (352)
T cd06174 184 FFLLSFGYYGLLTYLPLYLQEVLGLSAAE------AGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLL 257 (352)
T ss_pred HHHHHhHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3344445556666677776665 888888 999999999999999999999999999999 99999999999999
Q ss_pred HHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccCCccccc
Q 011424 128 LFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSS 206 (486)
Q Consensus 128 ~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~~~~gw 206 (486)
.....++.+.+.+..++.|++.+...+. .+++.|..|+++|++.++..+....+|..++|.+.+.+.+
T Consensus 258 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~----------- 326 (352)
T cd06174 258 LLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD----------- 326 (352)
T ss_pred HHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------
Confidence 9999999999999999999998888786 9999999999999999999999999999999999999998
Q ss_pred ccccccCCChhhHHHHHHHHHHHHHHHH
Q 011424 207 ESLFGKFPYFLPCLCISLFAFGVTIAAF 234 (486)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (486)
..+|+..+.+.++..++..+...
T Consensus 327 -----~~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 327 -----TGGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred -----ccCcchHHHHHHHHHHHHHHHhe
Confidence 33444444666666665554443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.2e-13 Score=126.50 Aligned_cols=156 Identities=15% Similarity=0.292 Sum_probs=122.0
Q ss_pred hcccHHH-HHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHhccchHHHH
Q 011424 60 LFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMA 138 (486)
Q Consensus 60 ~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l 138 (486)
.....|. +.+++|.++.+ .+++.+.......++.++.|++.||+|||+++.++.++..+......+.++.+.+
T Consensus 218 ~~~~~~~~~~~~~g~~~~~------~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (375)
T TIGR00899 218 YIINMPLLIIHELGLPDKL------AGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWAL 291 (375)
T ss_pred HHhhhHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344454 45778998888 8888888777778889999999999999999988877766666666667888888
Q ss_pred HHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccCCcccccccccccCCChh
Q 011424 139 VLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFL 217 (486)
Q Consensus 139 ~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~ 217 (486)
++.+++.|++.+...+. ..++.|..|+ +|++++++++....+|..++|.+++.+.+ ..+|+.
T Consensus 292 ~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~----------------~~g~~~ 354 (375)
T TIGR00899 292 LMLQLLNAIFIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAE----------------RWSYHA 354 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH----------------hccchh
Confidence 88999999988877775 7888898876 56799999999999999999999999988 334444
Q ss_pred hHHHHHHHHHHHHHHHHhcCC
Q 011424 218 PCLCISLFAFGVTIAAFWLPE 238 (486)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~e 238 (486)
.+...++..++..+...+++|
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 355 VYWFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred HHHHHHHHHHHHHHHHheecC
Confidence 456666666666555555543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.7e-13 Score=128.50 Aligned_cols=161 Identities=17% Similarity=0.118 Sum_probs=130.4
Q ss_pred hcccHHHHHHH-hcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHhccchHHHH
Q 011424 60 LFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMA 138 (486)
Q Consensus 60 ~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l 138 (486)
.....|.+.++ +|.+..+ .+++.+...++..++.++.+++.||.++|+.+..+.++.+++.++..+.++.+.+
T Consensus 242 ~~~~~p~~~~~~~g~~~~~------~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 315 (417)
T PRK10489 242 VRVLYPALADEVWQMGAAQ------IGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILA 315 (417)
T ss_pred HHHhhHHHHHhccCCChhH------hHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHH
Confidence 44556777666 8998888 9999999999999999999999999888888888888888888888888998888
Q ss_pred HHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccCCcccccccccccCCChh
Q 011424 139 VLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFL 217 (486)
Q Consensus 139 ~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~ 217 (486)
.++.++.|++.+...+. .+++.|..|++.|+++++++.....+|..+||.+.|++.+ .++.+.
T Consensus 316 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~----------------~~g~~~ 379 (417)
T PRK10489 316 VLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGA----------------MMTPVA 379 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHH----------------Hhchhh
Confidence 88999999988877776 7889999999999999999999999999999999999998 333333
Q ss_pred hHHHHHHHHHH-HHHHHHhcCCcccC
Q 011424 218 PCLCISLFAFG-VTIAAFWLPETLHR 242 (486)
Q Consensus 218 ~~~~~~~~~~~-~~~~~~~~~e~~~~ 242 (486)
.+...+...++ ..+....+||.++.
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (417)
T PRK10489 380 SASASGFGLLIIGVLLLLVLGELRRF 405 (417)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccc
Confidence 33444433333 44555666766543
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.7e-13 Score=125.84 Aligned_cols=155 Identities=20% Similarity=0.190 Sum_probs=124.0
Q ss_pred hhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHhccch
Q 011424 55 LPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVN 134 (486)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~ 134 (486)
..........|.+.++.+.+ + .++..+.+.++..+++++.|++.||+|||+.+..+..+..++.++..+.++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~ 301 (392)
T PRK12382 230 VGFAVIGTFVSLYFASKGWA--M------AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPT 301 (392)
T ss_pred HHHhHHHHHHHHHHHhcCCc--h------hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHccc
Confidence 33444455566666666654 3 556667788888999999999999999999999999998888888888888
Q ss_pred HHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccCCcccccccccccC
Q 011424 135 FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKF 213 (486)
Q Consensus 135 ~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~~~~gw~~~~~~~ 213 (486)
.+.+++.+++.|++.+...+. .+.+.|.+|+++|+++.++.+....+|..++|.+.+++.+ .+||
T Consensus 302 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~-------~~g~------- 367 (392)
T PRK12382 302 AWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLAT-------SFGY------- 367 (392)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhCc-------
Confidence 888889999999998877775 7888999999999999999999999999999999999998 4444
Q ss_pred CChhhHHHHHHHHHHHHHHH
Q 011424 214 PYFLPCLCISLFAFGVTIAA 233 (486)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~ 233 (486)
+..+.+.++..++..+..
T Consensus 368 --~~~~~~~~~~~~~~~~~~ 385 (392)
T PRK12382 368 --PSVFLAGAISAVLGIIVT 385 (392)
T ss_pred --hHHHHHHHHHHHHHHHHH
Confidence 444456665555554443
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.6e-13 Score=128.33 Aligned_cols=162 Identities=17% Similarity=0.223 Sum_probs=126.2
Q ss_pred hhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHhccc
Q 011424 54 ALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV 133 (486)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~ 133 (486)
........+.++.+.++.+.+..+ .....+.+.++..++..++.++.|+++||+|||+.+..+..+..++.+...+.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~ 309 (408)
T PRK09874 232 QVATGSIAPILTLYVRELAGNVSN--IAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQ 309 (408)
T ss_pred HHHHHHHHHHHHHHHHHHhccchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhc
Confidence 334445556667666665433322 122256677778888899999999999999999999999888888888777788
Q ss_pred hHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccCCccccccccccc
Q 011424 134 NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGK 212 (486)
Q Consensus 134 ~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~~~~gw~~~~~~ 212 (486)
+.+.+++.+++.|++.+...+. .+++.+..|+++|++.++..+....+|..+||.+++.+.+ .
T Consensus 310 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~----------------~ 373 (408)
T PRK09874 310 TPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISA----------------N 373 (408)
T ss_pred cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHh----------------h
Confidence 8899999999999998888876 8888899999999999999999999999999999999988 3
Q ss_pred CCChhhHHHHHHHHHHHHHHH
Q 011424 213 FPYFLPCLCISLFAFGVTIAA 233 (486)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~ 233 (486)
.+|+..+.+.++..++..+..
T Consensus 374 ~g~~~~f~~~~~~~l~~~~~~ 394 (408)
T PRK09874 374 YGFRAVFLVTAGVVLFNAVYS 394 (408)
T ss_pred cchhHHHHHHHHHHHHHHHHH
Confidence 344555566666665554443
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.3e-12 Score=122.96 Aligned_cols=180 Identities=12% Similarity=0.075 Sum_probs=128.2
Q ss_pred HHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHH
Q 011424 43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV 122 (486)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~ 122 (486)
.+.+.+..++...........+|.+.+++|.+..+ .+...+.+.++..++.++.|++.||+|||+.+.++..+.
T Consensus 207 ~~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~------ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~ 280 (393)
T PRK09705 207 AWTLGVYFGLINGGYASLIAWLPAFYIEIGASAQY------SGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQ 280 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhh------hhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 33344444444555556666778777789999888 999999999999999999999999999999999888777
Q ss_pred HHHHHHHhc-cchHHHHHHHHHHHHhhccchhhH-HHHHhhhcc-chhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCcc
Q 011424 123 VIFNTLFGL-SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFR-EEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK 199 (486)
Q Consensus 123 ~~~~~~~~~-a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~ 199 (486)
.++..+... .++...+ .-++.|++.+...+. .....+..+ +++|++..+..+....++..++|.+.+++.+
T Consensus 281 ~~~~~~~~~~~~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~---- 354 (393)
T PRK09705 281 LVGFCGFIWLPLQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRS---- 354 (393)
T ss_pred HHHHHHHHHccchHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 777665543 3332222 224567877776664 556666664 6789999999999999999999999999998
Q ss_pred CCcccccccccccCCChhhHHHHHHHHHHHH-HHHHhcCCcccCCCC
Q 011424 200 YPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHND 245 (486)
Q Consensus 200 ~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~ 245 (486)
..| +|...+.+..+.+++.. ....+.||+++++..
T Consensus 355 ---~~g--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (393)
T PRK09705 355 ---ISG--------NYLMDWAFHALCVVGLMIITLRFAPARFPQLWV 390 (393)
T ss_pred ---HhC--------CchHHHHHHHHHHHHHHHHHHHhccccccchhc
Confidence 222 13444455554444443 345567777655443
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.2e-13 Score=132.36 Aligned_cols=147 Identities=17% Similarity=0.151 Sum_probs=117.5
Q ss_pred HHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhc--CCchhhhH--H
Q 011424 43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY--GRKPVIIM--G 118 (486)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~--Grr~~l~~--~ 118 (486)
++......++..+........+|.+.+++|.+..+ .+++.++..++..+++++.|+++||. ++|+...+ +
T Consensus 243 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 316 (455)
T TIGR00892 243 FLVYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYE------AAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFA 316 (455)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHH
Confidence 44444444555555555556677778889999888 99999999999999999999999984 33433333 3
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcc
Q 011424 119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (486)
Q Consensus 119 ~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~ 195 (486)
.++.+++.+++..+++++.+++.+++.|++.+...+. .+++.|.+|++++++.+++++...++|..+||.++|.+.+
T Consensus 317 ~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~ 394 (455)
T TIGR00892 317 LLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVD 394 (455)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeeh
Confidence 4444455556667889999999999999998887776 8999999999999999999999999999999999999987
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.3e-12 Score=122.69 Aligned_cols=131 Identities=20% Similarity=0.293 Sum_probs=106.9
Q ss_pred hhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHhccchH
Q 011424 56 PISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF 135 (486)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~ 135 (486)
........+|.+.++.|.++++ .+++.+...++..+++++.|++.||+|+|+++..+..+..++.+... + .
T Consensus 215 ~~~~~~~~lp~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~ 285 (381)
T PRK03633 215 VLGSLYGLMPLYLNHQGMSDAS------IGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-Q 285 (381)
T ss_pred HHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-h
Confidence 3344445678888888888888 89999999999999999999999999999999888888777665443 2 2
Q ss_pred HHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcc
Q 011424 136 WMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (486)
Q Consensus 136 ~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~ 195 (486)
.......++.|++.+...|. .+.+.|..|+++++...+......++|..+||.++|++.+
T Consensus 286 ~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~ 346 (381)
T PRK03633 286 AAMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQ 346 (381)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445677788876666675 8888999999888888888888999999999999999998
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.9e-12 Score=124.06 Aligned_cols=171 Identities=15% Similarity=0.238 Sum_probs=123.7
Q ss_pred HHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhh-HHHHH
Q 011424 43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII-MGTAS 121 (486)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~-~~~~~ 121 (486)
++...+..++............|.+.+++|.+..+ .+++.+...++..++.++.|+++||+|||+.+. .+.+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~------~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~ 297 (402)
T TIGR00897 224 VLLGGMVRIINTIGLFGFAVFLPMFVAELGFSTSE------WLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVG 297 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhH------HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Confidence 34444444555555555566778888899999888 889999999999999999999999999988764 33333
Q ss_pred HHHHHHHHh-----ccchHHHHHHHHHHHHhhccchhhHHHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhccc
Q 011424 122 VVIFNTLFG-----LSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP 196 (486)
Q Consensus 122 ~~~~~~~~~-----~a~~~~~l~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~ 196 (486)
..++.+... ..++.+.+++..++.|++.+...+....+.|..| ++|++++|+.+....+|..++|.+++.+.+
T Consensus 298 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~- 375 (402)
T TIGR00897 298 CGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVPLAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIG- 375 (402)
T ss_pred HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 333333322 2346777788888899887666555566677654 689999999999999999999999999998
Q ss_pred CccCCcccccccccccCCChhhHHHHHHHHHHHHHHHHhc
Q 011424 197 AEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL 236 (486)
Q Consensus 197 ~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (486)
.++++..+.+.++..++..+...++
T Consensus 376 ---------------~~g~~~~~~~~a~~~~i~~~~~~~~ 400 (402)
T TIGR00897 376 ---------------FFGAIGVVWIFAALYVVSAFLTAFI 400 (402)
T ss_pred ---------------hcchHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555566666655555444443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.7e-12 Score=124.01 Aligned_cols=146 Identities=11% Similarity=0.112 Sum_probs=116.5
Q ss_pred HHHHHHHHHHhhhhhhhhcccHHHHH-HHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHH
Q 011424 43 LFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS 121 (486)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~ 121 (486)
++...+..++............|.+. +++|.+..+ .+++.+.+.++..++.++.|+++||+|||+.+.....+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~------~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~ 280 (394)
T PRK03699 207 VLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLED------AGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGL 280 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH------hhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHH
Confidence 44444444554455555566777666 567999988 99999999999999999999999999999999888877
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcc
Q 011424 122 VVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (486)
Q Consensus 122 ~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~ 195 (486)
..+...+....+|.+.+.+..++.|++.+...+. .++..|..| +++++..+.......+|..++|.+.+++.+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~ 354 (394)
T PRK03699 281 ALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVA 354 (394)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 7777777767778877777888888876666664 677777765 446788888888999999999999999998
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.3e-12 Score=127.36 Aligned_cols=130 Identities=21% Similarity=0.273 Sum_probs=104.2
Q ss_pred hcccHHHHH-HHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHhc--cchHH
Q 011424 60 LFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGL--SVNFW 136 (486)
Q Consensus 60 ~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~--a~~~~ 136 (486)
....+|.+. +++|.+..+ .+++.+...++..++.++.|+++||+|||+++..+.++..+..+.... ..+.+
T Consensus 294 ~~~~lp~~l~~~~g~~~~~------~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (496)
T PRK03893 294 IQALLPTYLKTDLGYDPHT------VANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVW 367 (496)
T ss_pred HHHHHHHHHHhhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHH
Confidence 445677776 588999988 999999999999999999999999999999998887776666554433 24445
Q ss_pred HHHHHHHHHHhh-ccchhhHHHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcc
Q 011424 137 MAVLTRFLLGSL-NGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (486)
Q Consensus 137 ~l~~~r~l~G~~-~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~ 195 (486)
.+.+..++.+.. .+......+++.|.+|+++|++++++.+....+|..+||.+++.+.+
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~ 427 (496)
T PRK03893 368 VLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQ 427 (496)
T ss_pred HHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhc
Confidence 555555555543 34333347889999999999999999999999999999999999998
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.6e-12 Score=121.06 Aligned_cols=145 Identities=13% Similarity=0.128 Sum_probs=111.5
Q ss_pred HHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHH-HHHhccchHHHHHHHHH
Q 011424 65 YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN-TLFGLSVNFWMAVLTRF 143 (486)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~-~~~~~a~~~~~l~~~r~ 143 (486)
|.+.+++|.+..+ .+++.+...++..++.++.|+++||+|||++.. +..+..++. .+....++.+.+++..+
T Consensus 230 ~~l~~~~g~s~~~------~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~ 302 (390)
T PRK03545 230 PFVQQVAGLSENF------ATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSI 302 (390)
T ss_pred HHHHHhcCCCccH------HHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 4445557888888 899999999999999999999999999887544 444444443 34455678888888999
Q ss_pred HHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccCCcccccccccccCCChhhHHHH
Q 011424 144 LLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCI 222 (486)
Q Consensus 144 l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~ 222 (486)
+.|++.+...+. .+.+.|..| ++|++++++++....+|..+||+++|.+.+ .++++..+...
T Consensus 303 l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~----------------~~g~~~~~~~~ 365 (390)
T PRK03545 303 FWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSL----------------HLGLSSIGYVG 365 (390)
T ss_pred HHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------ccChhHHHHHH
Confidence 999987666665 777778766 588999999999999999999999999998 44455555666
Q ss_pred HHHHHHHHHHH
Q 011424 223 SLFAFGVTIAA 233 (486)
Q Consensus 223 ~~~~~~~~~~~ 233 (486)
++..++.++..
T Consensus 366 ~~~~~~~~~~~ 376 (390)
T PRK03545 366 AALALAALVWS 376 (390)
T ss_pred HHHHHHHHHHH
Confidence 66665554443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.3e-12 Score=121.60 Aligned_cols=148 Identities=14% Similarity=0.104 Sum_probs=106.6
Q ss_pred hHHHHHHHHHHHhhhhhhhhcccHHHHH-HHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchh--hh-
Q 011424 41 TELFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPV--II- 116 (486)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~--l~- 116 (486)
+.++...+..++............|.+. +++|.+..+ .+++.+...++..++.++.|+++||+|||+. ..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 288 (399)
T TIGR00893 215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILE------AGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFA 288 (399)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHH------hhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Confidence 3455555566666666666777777655 567888888 8999999999999999999999999999961 11
Q ss_pred -----HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhh
Q 011424 117 -----MGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG 190 (486)
Q Consensus 117 -----~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~ 190 (486)
.+.++..+........++.+.......+.+.+.+ ..+. .+++.|.+|+++|++++++.+....+|..++|.+.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~ 367 (399)
T TIGR00893 289 RKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVI 367 (399)
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHh
Confidence 1111111222222223344444444444444555 5554 89999999999999999999999999999999999
Q ss_pred hhhcc
Q 011424 191 GFLAQ 195 (486)
Q Consensus 191 ~~l~~ 195 (486)
+.+.+
T Consensus 368 g~l~~ 372 (399)
T TIGR00893 368 GAIAA 372 (399)
T ss_pred hhhcc
Confidence 99998
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.8e-12 Score=124.17 Aligned_cols=147 Identities=20% Similarity=0.201 Sum_probs=113.2
Q ss_pred HHHHHHHHHHhhhhhhhhcccHHHHH-HHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHH
Q 011424 43 LFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS 121 (486)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~ 121 (486)
++......+.............|.+. +++|.++.+ .+.+.+...++..++.++.|+++||+|||+.+..+..+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~ 294 (394)
T TIGR00883 221 FLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANS------ALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVL 294 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhH------HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence 44444455555555566666777665 678888888 89999999999999999999999999999988765544
Q ss_pred HHHHH--HHHhc--cchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhH-HHHHhhhhHHHHhhhhhhhcc
Q 011424 122 VVIFN--TLFGL--SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLST-VSTAWGIGLIIGPALGGFLAQ 195 (486)
Q Consensus 122 ~~~~~--~~~~~--a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~ig~~l~~~l~~ 195 (486)
..+.. +...+ .++.+.+.+..++.|++.+...+. .+++.|.+|+++|+++.++ .+.+..+|..++|.+++++.+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~ 374 (394)
T TIGR00883 295 AALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVA 374 (394)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHH
Confidence 44333 22222 356777778888889887776665 9999999999999999997 456667899999999999998
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.4e-12 Score=118.43 Aligned_cols=146 Identities=15% Similarity=0.129 Sum_probs=119.1
Q ss_pred HHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHH
Q 011424 43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV 122 (486)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~ 122 (486)
++......++............|.+.+|.|.++.+ .|.+.+...++..+..++.|++.||+|+|+.+..+.++.
T Consensus 207 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~ 280 (382)
T PRK11128 207 VWRFLLCVSLLQGSHAAYYGFSAIYWQAAGYSAST------IGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICG 280 (382)
T ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHCCCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 33333334444444444555666677889999888 899999999999999999999999999999999999999
Q ss_pred HHHHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHH-HHhhhhHHHHhhhhhhhcc
Q 011424 123 VIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVS-TAWGIGLIIGPALGGFLAQ 195 (486)
Q Consensus 123 ~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~ig~~l~~~l~~ 195 (486)
+++.++.+.+++++.+++..++.|++.+...+. ..++.+. +++++++..+..+ ...++|..+||.++|.+.+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~ 354 (382)
T PRK11128 281 VVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQ 354 (382)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988888888999999999999999998887775 7788776 5666788888876 5567888999999999998
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-09 Score=100.01 Aligned_cols=342 Identities=13% Similarity=0.074 Sum_probs=203.9
Q ss_pred HHHHHH-hcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHhccchHHHHHHHHH
Q 011424 65 YFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRF 143 (486)
Q Consensus 65 ~~~~~~-~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~ 143 (486)
|++.+. .|.+++|. ..-+.-...-.+....++...+.|..|.|++++++.+...+...+..+.++...+-+..+
T Consensus 28 ~yL~~~~kn~T~~qv-----~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~ 102 (412)
T PF01770_consen 28 PYLTGPDKNFTEEQV-----NNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQF 102 (412)
T ss_pred HHHcCCccCCCHHHH-----HHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHH
Confidence 444443 67777662 234555666677888899999999999999999999999999999999999999999999
Q ss_pred HHHhhccchhhHHHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccCCcccccccccccCCChhhHHHHH
Q 011424 144 LLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCIS 223 (486)
Q Consensus 144 l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~ 223 (486)
+.|++.+.-..-.+++-...|+++-.++.+...++..+|..++.++|..+.. ++ ...++....+..
T Consensus 103 ~yg~~~a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs--------~~------~~sy~~L~~isl 168 (412)
T PF01770_consen 103 FYGLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVS--------FG------GVSYFQLNYISL 168 (412)
T ss_pred HHHHHHHHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hc------CCCHHHHHHHHH
Confidence 9999877755558898888899999999999999999999999999998886 22 334555555555
Q ss_pred HHHHHHHHHHHhcCCcccCC---CCCCCccc---chhhhccccccch---hhhcc-----------cCCCcccccccchh
Q 011424 224 LFAFGVTIAAFWLPETLHRH---NDDDDSCD---VSYDALESASAEV---KEEEG-----------REATPKKSLLKNWP 283 (486)
Q Consensus 224 ~~~~~~~~~~~~~~e~~~~~---~~~~~~~~---~~~~~~~~~~~~~---~~~~~-----------~~~~~~~~~~~~~~ 283 (486)
....++++..+++|..++.. +..+++.+ ...+..++..++. ++.++ ....+.++..+||.
T Consensus 169 ~~~~~a~~~~~fLP~~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ 248 (412)
T PF01770_consen 169 ASVSLALLIALFLPMPKRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPR 248 (412)
T ss_pred HHHHHHHHHHHHcCCCCcccceeccCccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCch
Confidence 55555666667788765432 11111000 0000000100000 00000 01123445567777
Q ss_pred hHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 011424 284 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVL 363 (486)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (486)
++...+-..+..+......++........ ...+-...-.|.+-....+.+.++.+ ..+.+..+..+...+.++...
T Consensus 249 ll~WSlWWa~atcgy~qv~nYvQ~LW~~v---~~~~~~~vYNG~VeA~~tllgA~~al-~~g~v~~~w~~~~~l~l~~~S 324 (412)
T PF01770_consen 249 LLLWSLWWAFATCGYYQVINYVQSLWDTV---PPSDNESVYNGAVEAASTLLGAIAAL-LAGYVKVNWDRWGELALGVFS 324 (412)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhc---CCCCCCcccchHHHHHHHHHHHHHHH-HHhHhhcchHHHHHHHHHHHH
Confidence 76655555554444333333332222211 11233344456777777777777776 455555555555444444333
Q ss_pred HHHH--HHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHH
Q 011424 364 TIPL--LTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAG 435 (486)
Q Consensus 364 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~ 435 (486)
...+ +.++.... ..| ...+..++.........+....-++.....+.-|...|+.+.+..+-..+-
T Consensus 325 ~l~a~~L~lm~~t~-----~Iw-v~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiNtf~Al~LQtil 392 (412)
T PF01770_consen 325 LLQAGLLFLMSFTG-----NIW-VCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGINTFVALVLQTIL 392 (412)
T ss_pred HHHHHHHHHHHHhh-----HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeHHHHHHHHHHhe
Confidence 2222 22222222 122 223333333333444455555555555677888999998877665544443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.6e-11 Score=115.66 Aligned_cols=173 Identities=12% Similarity=0.101 Sum_probs=126.2
Q ss_pred hhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 011424 282 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG 361 (486)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (486)
+.++...+..++..........+++.|+.+. +|++..+.|+..+...+..++.++ ..+.+.||+|||+.+..+.
T Consensus 7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~-----~g~s~~~~g~~~s~~~~~~~~~~~-~~G~l~Dr~g~k~~~~~~~ 80 (395)
T PRK10054 7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQ-----YSLSVDLIGYAMTIALTIGVVFSL-GFGILADKFDKKRYMLLAI 80 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhhcCcchhHHHHH
Confidence 3455666667776666666667777776544 799999999999999999999988 5566666789999888877
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHH
Q 011424 362 VLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGA 441 (486)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~ 441 (486)
....++...+.+.+. .+. .++...+.+.......+....+..|..|+++|+++.|+.+...++|.+++|.+.+.
T Consensus 81 ~~~~~~~~~~~~~~~-----~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~ 154 (395)
T PRK10054 81 TAFASGFIAIPLVNN-----VTL-VVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTL 154 (395)
T ss_pred HHHHHHHHHHHHHhH-----HHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776666655554332 111 22222233333344566677888898999999999999999999999999999998
Q ss_pred HHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhh
Q 011424 442 LFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTF 477 (486)
Q Consensus 442 l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~ 477 (486)
+.+ . +|+..|.+.+++.++..+...
T Consensus 155 l~~-~----------g~~~~f~~~~~~~~i~~i~~~ 179 (395)
T PRK10054 155 LVM-Q----------SINLPFWLAAICSAFPLVFIQ 179 (395)
T ss_pred HHH-h----------ccCcHHHHHHHHHHHHHHHHH
Confidence 874 3 688888888877777655443
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-11 Score=121.29 Aligned_cols=148 Identities=16% Similarity=0.167 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHhhhhhhhhcccHHHH-HHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHH
Q 011424 42 ELFSIWIIVLCTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA 120 (486)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~ 120 (486)
.++.+.+..++...........+|.+ .+++|.+..+ .++..+...++..++.+++|+++||+|||+.+.....
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~------a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~ 332 (467)
T PRK09556 259 VIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKED------AINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIA 332 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHH
Confidence 34445555555555555566667755 4678999988 8999999999999999999999999999988776554
Q ss_pred HHHHHHH--HHhccchHHHHHHHHHHHHhhc-cchhhHHHHHhhhccchhhhhHhhHHHHHhhh-hHHHHhhhhhhhcc
Q 011424 121 SVVIFNT--LFGLSVNFWMAVLTRFLLGSLN-GLLGPIKAYACEIFREEHQALGLSTVSTAWGI-GLIIGPALGGFLAQ 195 (486)
Q Consensus 121 ~~~~~~~--~~~~a~~~~~l~~~r~l~G~~~-g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~ig~~l~~~l~~ 195 (486)
+..++.. .....++...+.+.+++.|+.. +..........|.+|+++|+++.|+.+...++ |..++|.+.|.+.+
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~ 411 (467)
T PRK09556 333 LALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIAD 411 (467)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhc
Confidence 4443332 2233457777778888888653 33333356677999999999999999988886 77999999999987
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.6e-11 Score=118.84 Aligned_cols=168 Identities=16% Similarity=0.194 Sum_probs=114.8
Q ss_pred HhhhhhhhhcccHHHH-HHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHh
Q 011424 52 CTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFG 130 (486)
Q Consensus 52 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~ 130 (486)
.............|.+ .+++|.+... ...+.....+...++.++.|+++||+|||+++..+.++..++.+...
T Consensus 261 ~~~~~~~~~~~~~~~y~~~~~g~s~~~------~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~ 334 (438)
T PRK09952 261 CELLTMYIVTAFALNYSTQNLGLPREL------FLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFF 334 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 3333444444555544 4667877765 55555566667788899999999999999999888776655543332
Q ss_pred c----cchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHH-HHhhhhHHHHhhhhhhhcccCccCCccc
Q 011424 131 L----SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVS-TAWGIGLIIGPALGGFLAQPAEKYPNLF 204 (486)
Q Consensus 131 ~----a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~ig~~l~~~l~~~~~~~~~~~ 204 (486)
. .++.+.+++..++.+++.+...+. .++++|.+|.+.|+.+.++.. .+..+|..++|.+.+++.+. .
T Consensus 335 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~-------~ 407 (438)
T PRK09952 335 MALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTY-------F 407 (438)
T ss_pred HHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-------c
Confidence 2 233445555666777877776664 899999999999998888854 44558999999999999872 1
Q ss_pred ccccccccCCChhhHHHHHHHHHHHHHHHHhcCCc
Q 011424 205 SSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPET 239 (486)
Q Consensus 205 gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 239 (486)
..+|+.++....+.+++..+..+.++|+
T Consensus 408 -------~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 408 -------GGSWHSVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred -------CCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence 1134555566666666666666666663
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.37 E-value=8e-12 Score=119.88 Aligned_cols=143 Identities=20% Similarity=0.257 Sum_probs=113.5
Q ss_pred HHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHH
Q 011424 45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI 124 (486)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~ 124 (486)
.++...+.............|.+.+++|.+..+ .++..+...++..++.++.|+++||+|||+.+....+....
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 327 (398)
T TIGR00895 254 LLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSL------AATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVF 327 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 334444444455555566678888899999888 89999999999999999999999999999555444443333
Q ss_pred HHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhh
Q 011424 125 FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL 193 (486)
Q Consensus 125 ~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l 193 (486)
..++....++.+.+++..++.|++.+...+. .+++.|.+|+++|++++|+......+|..+||.++|++
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 328 AVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 3333333567778888889999988877776 99999999999999999999999999999999999876
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.7e-12 Score=119.37 Aligned_cols=128 Identities=16% Similarity=0.185 Sum_probs=115.6
Q ss_pred ccHHHHHHH-hcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHhccch-HHHHH
Q 011424 62 PFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVN-FWMAV 139 (486)
Q Consensus 62 ~~~~~~~~~-~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~-~~~l~ 139 (486)
...|.+.++ +|.+..+ .+++.+...++..++.++.+++.||+|||+.+..+..+.+++..+..+.++ ++.++
T Consensus 232 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (365)
T TIGR00900 232 ALFPYVQSKYLGRGSTH------YGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFL 305 (365)
T ss_pred HHhHHHHHHHhCCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHH
Confidence 566777765 7988888 999999999999999999999999999999999888888888887777774 88889
Q ss_pred HHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcc
Q 011424 140 LTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (486)
Q Consensus 140 ~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~ 195 (486)
+..++.|++.+...+. .+++.|..|+++|++..++.+....+|..++|.++|.+.+
T Consensus 306 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~ 362 (365)
T TIGR00900 306 VLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD 362 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888776 8999999999999999999999999999999999999987
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.2e-11 Score=118.01 Aligned_cols=130 Identities=19% Similarity=0.229 Sum_probs=98.9
Q ss_pred hcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHhccchHHHHH
Q 011424 60 LFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAV 139 (486)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~ 139 (486)
....+|.+.++.|.+..+ .+.+.+...++..++.++.|++.||+|||+.+..+.++..+..+.....++.....
T Consensus 250 ~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (426)
T PRK12307 250 IFGLLPTYLAGEGFDTGV------VSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLL 323 (426)
T ss_pred HHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHH
Confidence 445677777888888877 88889999999999999999999999999999888877766655443322211122
Q ss_pred HHHHHHHh--hccchhh-HHHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcc
Q 011424 140 LTRFLLGS--LNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (486)
Q Consensus 140 ~~r~l~G~--~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~ 195 (486)
+.-.+.|+ +.....+ ...++.|.+|+++|++++|+......+|..++|.+.+++.+
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~ 382 (426)
T PRK12307 324 LGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGI 382 (426)
T ss_pred HHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHH
Confidence 22233333 2222333 37788999999999999999999999999999999999988
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.2e-11 Score=119.98 Aligned_cols=172 Identities=17% Similarity=0.187 Sum_probs=122.7
Q ss_pred HHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHH
Q 011424 47 WIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN 126 (486)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~ 126 (486)
.+..+.............|.+.+++|.+..+ .++......++..++.++.|+++||+|||+.+.++.++.+++.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 363 (481)
T TIGR00879 290 VLQWFQQFTGINAIMYYSPTIFENAGVSTDH------AFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICL 363 (481)
T ss_pred HHHHHHHHhCCeehHHHHHHHHHHcCCCchH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 3333333444444556678888899998877 8888899999999999999999999999999999988888777
Q ss_pred HHHhc-----cc------hHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhc
Q 011424 127 TLFGL-----SV------NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA 194 (486)
Q Consensus 127 ~~~~~-----a~------~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~ 194 (486)
++.++ .+ +...+....++.+.......+. ..++.|.+|+++|++++++.+...++|.+++|.+.+.+.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~ 443 (481)
T TIGR00879 364 FVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTML 443 (481)
T ss_pred HHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66652 11 3333333333333322233454 778899999999999999999999999999999999998
Q ss_pred ccCccCCcccccccccccCCChhhHHHHHHHHHHHHH-HHHhcCCcc
Q 011424 195 QPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETL 240 (486)
Q Consensus 195 ~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~ 240 (486)
+ ..||+..| .+.++++++..+ ..++.||++
T Consensus 444 ~-------~~~~~~~f---------~~~~~~~~~~~i~~~~~~~~~~ 474 (481)
T TIGR00879 444 E-------SIGVGGVF---------IFFGGLNVLGLIFVYFFLPETK 474 (481)
T ss_pred H-------hcCcccee---------hhHHHHHHHHHHHHheecccCC
Confidence 7 45555444 455555554443 344556654
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.8e-11 Score=118.74 Aligned_cols=147 Identities=16% Similarity=0.179 Sum_probs=117.8
Q ss_pred HHHHHHHHHHhhhhhhhhcccHHHHHH-HhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHH
Q 011424 43 LFSIWIIVLCTALPISSLFPFLYFMIK-DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS 121 (486)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~ 121 (486)
+.......++............|.+.+ .+|.++.+ .++......++..++.++.|++.||+|||+++..+.++
T Consensus 263 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~ 336 (471)
T PRK10504 263 FSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFH------AGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLG 336 (471)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 444444555555555556666777766 47888877 89999888898889999999999999999999999888
Q ss_pred HHHHHHHHhcc---chHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcc
Q 011424 122 VVIFNTLFGLS---VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (486)
Q Consensus 122 ~~~~~~~~~~a---~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~ 195 (486)
.++...+..+. ++.+.+.+.-++.|++.+...+. ..++.+..|+++|+.+.++.+....+|..+|+.+++.+.+
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~ 414 (471)
T PRK10504 337 LALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLG 414 (471)
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88776665553 34445556677888887776665 8888899999999999999999999999999999999887
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-11 Score=119.33 Aligned_cols=131 Identities=18% Similarity=0.245 Sum_probs=106.4
Q ss_pred hhcccHHH-HHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHH-HHHhccchHH
Q 011424 59 SLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN-TLFGLSVNFW 136 (486)
Q Consensus 59 ~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~-~~~~~a~~~~ 136 (486)
......|. +.+++|.+..+ .+++.+...++..++.++.|+++||+|||+.+.++.++..+.. .+....++.+
T Consensus 256 ~~~~~~~~~~~~~~g~s~~~------~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (405)
T TIGR00891 256 PIQDLLPTYLKADLGLSPHT------VANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVA 329 (405)
T ss_pred hhhhhhHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchH
Confidence 33344554 45678999888 9999999999999999999999999999999988877653332 3334456777
Q ss_pred HHHHHHHHHHhhccchhh-HHHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcc
Q 011424 137 MAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (486)
Q Consensus 137 ~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~ 195 (486)
.+.+..++.|+..+...+ ..+++.|.+|+++|++++|+.+....+|..++|++++.+.+
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~ 389 (405)
T TIGR00891 330 VLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQ 389 (405)
T ss_pred HHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777776555444 48899999999999999999999999999999999999998
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.1e-10 Score=111.73 Aligned_cols=174 Identities=14% Similarity=0.056 Sum_probs=126.8
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 011424 286 SSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTI 365 (486)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (486)
......++............+.|+.+. .|+++.+.|+......+...+.++ ..+.+.||++||+.+..+..+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~gl~~~~~~l~~~~~~~-~~G~l~dr~g~k~~l~~~~~~~~ 87 (400)
T PRK11646 14 FLLIDNMLVVLGFFVVFPLISIRFVDQ-----LGWAAVMVGIALGLRQFIQQGLGI-FGGAIADRFGAKPMIVTGMLMRA 87 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCcHHHHHHHHHHHHHHHHHHHh-hhhHHHHHhCchHHHHHHHHHHH
Confidence 344555555555555556666665433 799999999999998998888887 55666677899999998888887
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHH
Q 011424 366 PLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSW 445 (486)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 445 (486)
+....+..... .+ .+.+..++.+.......+...+++.+.+|+++|+++.|+.+...++|..+||.+.|.+. .
T Consensus 88 ~~~~~~~~~~~-----~~-~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~ 160 (400)
T PRK11646 88 AGFATMAIAHE-----PW-LLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-Q 160 (400)
T ss_pred HHHHHHHHhcc-----HH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 77766654321 12 23333444455555566777888889899999999999999999999999999999998 4
Q ss_pred HhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhcccccc
Q 011424 446 AQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQ 483 (486)
Q Consensus 446 ~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~ 483 (486)
. ||+..|++.+++.++..+...+ ..||
T Consensus 161 ~----------g~~~~f~~~~~~~~~~~i~~~~-~~~~ 187 (400)
T PRK11646 161 Y----------DFRLVCATGAVLFVLAAAFNAW-LLPA 187 (400)
T ss_pred h----------hHHHHHHHHHHHHHHHHHHHHH-hCCc
Confidence 4 6888998888777666554433 3444
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.9e-10 Score=105.46 Aligned_cols=176 Identities=18% Similarity=0.161 Sum_probs=142.1
Q ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 011424 283 PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGV 362 (486)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (486)
.++.+.++.+......+.....+|... ++++.|..++|...+.+..+..++.++.. .+.+|+.||+++.....
T Consensus 14 ~l~aLa~~~F~igttEfv~~gLLp~iA------~dl~vs~~~aG~lis~yAl~~ai~ap~l~-~lt~r~~Rr~lLl~~l~ 86 (394)
T COG2814 14 ALLALALAAFAIGTTEFVPVGLLPPIA------ADLGVSEGAAGQLITAYALGVALGAPLLA-LLTGRLERRRLLLGLLA 86 (394)
T ss_pred HHHHHHHHHHHHHhHHHHHHhchHHHH------HHcCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHcccchHHHHHHHHH
Confidence 345555566666656666555555443 44899999999999999999999999555 45556699999988888
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHH
Q 011424 363 LTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGAL 442 (486)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l 442 (486)
+..++-++..+.++.. .+.+.=++.+...+..++....+..+++|+++|+++.++..+...++..+|..++.++
T Consensus 87 lFi~~n~l~alAp~f~------~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~i 160 (394)
T COG2814 87 LFIVSNLLSALAPSFA------VLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFL 160 (394)
T ss_pred HHHHHHHHHHHhccHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHH
Confidence 8777777766654332 4555556667777888889999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhccccc
Q 011424 443 FSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLA 482 (486)
Q Consensus 443 ~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~ 482 (486)
-|.. ||+.+|++.+++.++..+..+. .+|
T Consensus 161 g~~~----------GWR~~F~~ia~l~ll~~~~~~~-~lP 189 (394)
T COG2814 161 GQLF----------GWRATFLAIAVLALLALLLLWK-LLP 189 (394)
T ss_pred HHHh----------hHHHHHHHHHHHHHHHHHHHHH-hCC
Confidence 9999 9999999999999999888877 666
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.2e-09 Score=97.87 Aligned_cols=367 Identities=13% Similarity=0.102 Sum_probs=207.5
Q ss_pred HHHHHHHHHHHhhhhhhhhcccHHHHHHHhccc-ccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHH
Q 011424 42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIA-KREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA 120 (486)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~ 120 (486)
....++...++...+.-+.....|.+..+...+ --. .+...-.-.+..++.++..|.+.||..|.++...+.+
T Consensus 3 ~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~------~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~ 76 (432)
T PF06963_consen 3 ALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLP------VSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLV 76 (432)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHH------HHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHH
Confidence 355677788888888888888888777776432 222 3444444456678889999999999999998877765
Q ss_pred HHHHHHHHHhc------c--c----hHHH---HHHHHHHHHhhccchhhH--HHHHhhh----c--cchhhhhHhhHHHH
Q 011424 121 SVVIFNTLFGL------S--V----NFWM---AVLTRFLLGSLNGLLGPI--KAYACEI----F--REEHQALGLSTVST 177 (486)
Q Consensus 121 ~~~~~~~~~~~------a--~----~~~~---l~~~r~l~G~~~g~~~~~--~~~i~~~----~--~~~~r~~~~~~~~~ 177 (486)
.--++..+.+. . + +-+. +++.-.+.|.-.-....+ .+.=.|| . +++.+.+..+...-
T Consensus 77 ~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRR 156 (432)
T PF06963_consen 77 VQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRR 156 (432)
T ss_pred HHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHH
Confidence 54333322221 1 1 1122 222222222222222222 1222334 3 35556677777777
Q ss_pred HhhhhHHHHhhhhhhhcccCccCCcccccccccccCCChhhHHHHHHHHHHHHHH-HHh-------cCCcccCCCCCCCc
Q 011424 178 AWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFW-------LPETLHRHNDDDDS 249 (486)
Q Consensus 178 ~~~~g~~ig~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------~~e~~~~~~~~~~~ 249 (486)
.=.+..+++|++.|.+.. ..+......+.+...++.+.. .++ .|+-..+++.++++
T Consensus 157 IDL~ckllaPl~vG~l~t----------------~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~~~ 220 (432)
T PF06963_consen 157 IDLFCKLLAPLFVGLLMT----------------FASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSSESE 220 (432)
T ss_pred HHHHHHHHHHHHHHHHhh----------------ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCcccc
Confidence 777899999999999987 344444444555555444322 111 22211111111111
Q ss_pred ccchhhhccccc------cchhhhcccCCCcccccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccc
Q 011424 250 CDVSYDALESAS------AEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQ 323 (486)
Q Consensus 250 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 323 (486)
.+...++..+.. +...+.-++....++..++++.+.. .+...+.++...++......|+.. .|+++.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vfla-s~alalLY~TVLsf~~lmt~yl~~------~G~s~~ 293 (432)
T PF06963_consen 221 SSSDEESSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFLA-SFALALLYFTVLSFGGLMTAYLKS------QGYSPS 293 (432)
T ss_pred ccccccccccccchhhHHHHHHHHHHHHhccHHHHHhCHHHHH-HHHHHHHHHHHhcCcHHHHHHHHH------CCCCHH
Confidence 110000000000 0000111222455666777775544 444444444456677777777765 399999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh----hHHHHHHHHHHHHhhhhhh
Q 011424 324 MVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGF----GLAFLLNCASVVKNLLSVS 399 (486)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 399 (486)
..|..-....+.++.+.. ..+++.+|+|..+.-.++......++.+........+. .....++......-.+.-+
T Consensus 294 ~igi~R~~gav~Gl~gT~-~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~ 372 (432)
T PF06963_consen 294 VIGIFRGLGAVFGLLGTW-VYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWS 372 (432)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHh
Confidence 999999999999999988 88899999998888777776555444333222111111 1111112222222222223
Q ss_pred hhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhh
Q 011424 400 IITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAG 438 (486)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~ 438 (486)
.-....-+.+|.+|+++||+..|+.+...++...+.-.+
T Consensus 373 fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~ 411 (432)
T PF06963_consen 373 FDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVL 411 (432)
T ss_pred hhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 334456678889999999999999999998887665443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.3e-11 Score=118.41 Aligned_cols=147 Identities=14% Similarity=0.085 Sum_probs=98.8
Q ss_pred HHHHHHHHHHhhhhhhhhcccHHHHHHH-hcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhc--CCchhhh-HH
Q 011424 43 LFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY--GRKPVII-MG 118 (486)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~--Grr~~l~-~~ 118 (486)
++...+..++...........+|.+.++ .|.+..+ .++....+.++..++.++.|+++||+ |||+... ..
T Consensus 255 ~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~------~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~ 328 (452)
T PRK11273 255 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDK------SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFF 328 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHH
Confidence 4444445545454555566678876655 7888887 88888899999999999999999999 5554332 22
Q ss_pred HHHHHHHHHHHhc--cchHHHHHHHHHHHHhhccchhh-HHHHHhhhccchhhhhHhhHHHHHhhhhHH-HHhhhhhhhc
Q 011424 119 TASVVIFNTLFGL--SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLI-IGPALGGFLA 194 (486)
Q Consensus 119 ~~~~~~~~~~~~~--a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-ig~~l~~~l~ 194 (486)
..+..++.+...+ ..+.+...++.++.|.+...... ...+..|.+|+++|++++|+.+....+|.. ++|.+.+.+.
T Consensus 329 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~ 408 (452)
T PRK11273 329 MTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV 408 (452)
T ss_pred HHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 2333333332222 33555555555555554322222 245678999999999999999888888765 5899999999
Q ss_pred c
Q 011424 195 Q 195 (486)
Q Consensus 195 ~ 195 (486)
+
T Consensus 409 ~ 409 (452)
T PRK11273 409 D 409 (452)
T ss_pred H
Confidence 8
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.5e-11 Score=116.49 Aligned_cols=143 Identities=13% Similarity=0.012 Sum_probs=109.9
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhh
Q 011424 317 GLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLL 396 (486)
Q Consensus 317 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (486)
++|++..+.+++.+...++..++++ ..+++.||+|+|+.+.++..+..++..+..+.... + .+.+..++.+.+
T Consensus 52 ~~g~s~~~~g~~~~~~~~~~~~~~~-~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-----~-~l~~~~~l~g~~ 124 (434)
T PRK11663 52 DLGLSRSDIGLLATLFYITYGVSKF-VSGIVSDRSNARYFMGIGLIATGIINILFGFSSSL-----W-AFALLWVLNAFF 124 (434)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHh-hhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHH-----H-HHHHHHHHHHHH
Confidence 3799999999999999999999988 56667777899999888888777776665553321 1 222222333444
Q ss_pred hhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHh
Q 011424 397 SVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMT 476 (486)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~ 476 (486)
.+...+....++.+.+|+++|++++|+.+....+|..++|.+.+.+.+.. ||+..|++.+++.++..++.
T Consensus 125 ~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~----------gw~~~f~~~~i~~~~~~~~~ 194 (434)
T PRK11663 125 QGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHY----------GWRYGMMIAGIIAIVVGLFL 194 (434)
T ss_pred HHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----------cHHHHHHHHHHHHHHHHHHH
Confidence 44456777788889999999999999999999999999999999998876 89999988877666554433
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.33 E-value=5e-11 Score=115.95 Aligned_cols=136 Identities=18% Similarity=0.260 Sum_probs=121.2
Q ss_pred hhhhhhhcccHHHHH-HHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHhcc
Q 011424 54 ALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS 132 (486)
Q Consensus 54 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a 132 (486)
.+....+...+|.+. +++|.+... .|++.+++.+|..++++..+++.+|+++++.+..+.++.+++.+..+++
T Consensus 231 ~l~~~a~~aLlPl~a~~~l~~~a~~------yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~ 304 (524)
T PF05977_consen 231 NLFASAVWALLPLFARDVLGGGASG------YGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS 304 (524)
T ss_pred HHhhhHHHHhhhHHHHHHhCCcHHH------HHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc
Confidence 333344455678766 567888888 9999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcc
Q 011424 133 VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (486)
Q Consensus 133 ~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~ 195 (486)
++.+..++.-++.|++.....+. .+.+-+..|++.||++++++.+....+..+|..+.|.+.+
T Consensus 305 ~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~ 368 (524)
T PF05977_consen 305 PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLAD 368 (524)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987776664 8889999999999999999999999999999999999998
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.32 E-value=8e-11 Score=113.30 Aligned_cols=179 Identities=13% Similarity=0.168 Sum_probs=139.9
Q ss_pred hHHHHHHHHHHHhhhhhhhhcccHHHH-HHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCc--hhhhH
Q 011424 41 TELFSIWIIVLCTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRK--PVIIM 117 (486)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr--~~l~~ 117 (486)
+.+....++.++..-+.+.+......+ .+++|.+..+ ...+.-+..+..++|++++|++.||+|.| +++++
T Consensus 281 ~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~------l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~ 354 (477)
T PF11700_consen 281 RQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQ------LIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLI 354 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHH
Confidence 344444555555554555555555444 5589999999 88888888999999999999999999999 89998
Q ss_pred HHHHHHHHHHHHhc--------cchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhh
Q 011424 118 GTASVVIFNTLFGL--------SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPA 188 (486)
Q Consensus 118 ~~~~~~~~~~~~~~--------a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~ 188 (486)
+++++.+..+...+ ..+-+.+.+.-++.|+..|...+. .++.+|..|+++.+..+|++....-....+||+
T Consensus 355 ~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPl 434 (477)
T PF11700_consen 355 SLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPL 434 (477)
T ss_pred HHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 88888666655554 577888999999999999998886 999999999999999999999999999999999
Q ss_pred hhhhhcccCccCCcccccccccccCCChhhHHHHHHHHHHHHHHHHhcCCcc
Q 011424 189 LGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETL 240 (486)
Q Consensus 189 l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 240 (486)
+-+.+.+. .| ..|..+....++.++.++++.++++++
T Consensus 435 l~g~i~~~-------tg--------~~r~g~~~l~~lf~~gl~ll~~v~~~~ 471 (477)
T PF11700_consen 435 LFGLITDA-------TG--------SQRYGFLFLLVLFLIGLILLFFVDVEK 471 (477)
T ss_pred HHHHHHHH-------hC--------CchhHHHHHHHHHHHHHHHHhhccchh
Confidence 99999982 22 234444555566666666666666544
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.3e-11 Score=118.91 Aligned_cols=182 Identities=14% Similarity=0.040 Sum_probs=109.3
Q ss_pred hhhhhhcccHHHHHHHhcccccchhhh-----hHhHH-HHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHH
Q 011424 55 LPISSLFPFLYFMIKDFQIAKREEDIG-----SYAGY-VGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTL 128 (486)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~g~-~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~ 128 (486)
+..+......|.+.++.|.+..+.... ..... ...+..++..++.++.++++||+|||++++++..+.+++.++
T Consensus 302 ~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~ 381 (502)
T TIGR00887 302 IAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFV 381 (502)
T ss_pred HHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHH
Confidence 333444455788888888875431100 00011 233444566778889999999999999999888777776655
Q ss_pred Hhccc----hHHHHHHHHHHHHhhccchhh-HHHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccCCcc
Q 011424 129 FGLSV----NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL 203 (486)
Q Consensus 129 ~~~a~----~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~~~ 203 (486)
.++.. +...+...-+...++.....+ ...+.+|.+|.+.|+++.++.+....+|.+++|.+.+.+.+.....
T Consensus 382 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 458 (502)
T TIGR00887 382 LGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPT--- 458 (502)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcccccc---
Confidence 55432 111111111112222222233 3677899999999999999999999999999999999887621100
Q ss_pred cccccccccCCChhhHHHHHHHHHHHHHHHHhcCCcccC
Q 011424 204 FSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHR 242 (486)
Q Consensus 204 ~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 242 (486)
.|+.. ..++...+.+.++.+++..+..+++||++.+
T Consensus 459 ~~~~~---~~~~~~~~~i~~~~~~~~~i~~~~lpEt~~~ 494 (502)
T TIGR00887 459 KGYPT---GIWMGHVLEIFALFMFLGILFTLLIPETKGK 494 (502)
T ss_pred ccccc---cccchHHHHHHHHHHHHHHHHheEeccCCCC
Confidence 00000 0122334455555555554555677987653
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.3e-10 Score=108.79 Aligned_cols=159 Identities=17% Similarity=0.109 Sum_probs=118.8
Q ss_pred ccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 011424 314 KLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVK 393 (486)
Q Consensus 314 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (486)
..+++|++..+.++..+...++..++++ ..+++.||+|||+.+..+..+..+......+.... ..+.+.-++.
T Consensus 34 l~~~~~~s~~~~g~~~s~~~~~~~~~~~-~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~r~l~ 106 (412)
T TIGR02332 34 MGKDLGLSATMFGLAATLFYAAYVICGI-PSNIMLAIIGARRWIAGIMVLWGIASTATMFATGP------ESLYLLRILV 106 (412)
T ss_pred hHhhcCCCHHHHHHHHHHHHHHHHHHHh-hHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCH------HHHHHHHHHH
Confidence 3345899999999999999999999988 45566777899999888887777776666553321 1333444555
Q ss_pred hhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHH
Q 011424 394 NLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGV 473 (486)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~ 473 (486)
+.+.....+....+..|.+|+++|+++.++.+....+|..+++.+.+++.+..... . ..||+..|++.++..++..
T Consensus 107 G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~-~---~~gwr~~f~~~~~~~l~~~ 182 (412)
T TIGR02332 107 GIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLM-A---LKGWQWLFLLEGFPSVILG 182 (412)
T ss_pred HHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-C---ccchhHHHHHHHHHHHHHH
Confidence 66666677888888899999999999999999999999999999999887531000 0 0179999999888877666
Q ss_pred HHhhccccccC
Q 011424 474 LMTFKPFLAQR 484 (486)
Q Consensus 474 ~~~~~~~~~~~ 484 (486)
++.++ ++||+
T Consensus 183 ~~~~~-~~~~~ 192 (412)
T TIGR02332 183 VMTWF-WLDDS 192 (412)
T ss_pred HHHhh-ccCCC
Confidence 55554 45554
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.7e-11 Score=113.28 Aligned_cols=112 Identities=17% Similarity=0.089 Sum_probs=97.5
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhh
Q 011424 84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEI 162 (486)
Q Consensus 84 ~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~ 162 (486)
.|.+.++..+...++.++.|++.||+|||+.+.++.++.++...+...++|.+.+++.+++.|++....... ..+..+.
T Consensus 256 ~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 335 (396)
T TIGR00882 256 FGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQ 335 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 788888888999999999999999999999999999988888888788899999999999999986655443 6677888
Q ss_pred ccchhhhhHhhH-HHHHhhhhHHHHhhhhhhhcc
Q 011424 163 FREEHQALGLST-VSTAWGIGLIIGPALGGFLAQ 195 (486)
Q Consensus 163 ~~~~~r~~~~~~-~~~~~~~g~~ig~~l~~~l~~ 195 (486)
.+++.+++..+. .+....+|..+++.++|++.+
T Consensus 336 ~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~ 369 (396)
T TIGR00882 336 FDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYD 369 (396)
T ss_pred CCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHH
Confidence 888888877665 678899999999999999998
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.4e-10 Score=108.79 Aligned_cols=178 Identities=10% Similarity=0.094 Sum_probs=128.8
Q ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 011424 283 PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGV 362 (486)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (486)
.++......++............|.+. +++|.+..+.++..+...++..++++ ..+++.||+|||+.+..+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~l~~~~------~~~g~s~~~~g~~~s~~~~~~~~~~~-~~g~l~dr~g~r~~~~~~~~ 76 (382)
T PRK10091 4 VILSLALGTFGLGMAEFGIMGVLTELA------HDVGISIPAAGHMISYYALGVVVGAP-IIALFSSRYSLKHILLFLVA 76 (382)
T ss_pred hHHHHHHHHHHHHhhHHHHHhChHHHH------HHcCCCHHHHhHHHHHHHHHHHHHHH-HHHHHHccCccHHHHHHHHH
Confidence 344555555555555445444444433 34799999999999999999999998 55666677799999998888
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHH
Q 011424 363 LTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGAL 442 (486)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l 442 (486)
+..++..+..+..+ ...+.+..++.+.+.....+.......+..|+++|+++.++......++..++|.+.+.+
T Consensus 77 ~~~~~~~l~~~~~~------~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l 150 (382)
T PRK10091 77 LCVIGNAMFTLSSS------YLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYL 150 (382)
T ss_pred HHHHHHHHHHHhCc------HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHH
Confidence 87777666655432 123333444555555555666677788889999999999999999999999999999998
Q ss_pred HHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhccccccC
Q 011424 443 FSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQR 484 (486)
Q Consensus 443 ~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 484 (486)
.+.. ||+..|.+.+++.++..+..++ ..||.
T Consensus 151 ~~~~----------gwr~~f~~~~~~~~~~~~~~~~-~lp~~ 181 (382)
T PRK10091 151 SQEF----------SWRYTFLLIAVFNIAVLASIYF-WVPDI 181 (382)
T ss_pred hhhc----------cHHHHHHHHHHHHHHHHHHHHH-hCCCC
Confidence 8766 8999999988877766655444 35553
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.9e-10 Score=108.62 Aligned_cols=150 Identities=16% Similarity=0.108 Sum_probs=117.6
Q ss_pred CccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhh
Q 011424 316 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNL 395 (486)
Q Consensus 316 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (486)
+++|.++.+.++..+...++..++++ ..+.+.||+|||+.+..+..+..++......... .....+..++.+.
T Consensus 33 ~~~g~s~~~~g~~~~~~~~~~~~~~~-~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~g~ 105 (385)
T TIGR00710 33 ADLSTPASIVQMTLTLYLLGFAAGQL-LWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNN------IETLLVLRFVQAF 105 (385)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHH-hhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHcc------HHHHHHHHHHHHc
Confidence 44799999999999999999999988 5566677789999988887777766666554322 1133344455566
Q ss_pred hhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHH
Q 011424 396 LSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLM 475 (486)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~ 475 (486)
+.....+....+..|.+|+++|+++.++.+....++..++|.+.+.+.+.. +|+..|++.+++.++..+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~----------~~~~~~~~~~~~~~~~~~~ 175 (385)
T TIGR00710 106 GASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWL----------SWHAIFAFLSLAGILLSAL 175 (385)
T ss_pred chhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------CHHHHHHHHHHHHHHHHHH
Confidence 666677888889999999999999999999999999999999999998876 7999998888877777666
Q ss_pred hhcccccc
Q 011424 476 TFKPFLAQ 483 (486)
Q Consensus 476 ~~~~~~~~ 483 (486)
.++ ..||
T Consensus 176 ~~~-~~~~ 182 (385)
T TIGR00710 176 IFF-ILPE 182 (385)
T ss_pred HHH-hCCC
Confidence 554 3444
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.2e-10 Score=106.77 Aligned_cols=150 Identities=17% Similarity=0.082 Sum_probs=117.2
Q ss_pred CccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhh
Q 011424 316 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNL 395 (486)
Q Consensus 316 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (486)
+++|+++.+.++..+...++..+++++. +.+.||+|||+.+..+..+..+......+... ...+++.-++.+.
T Consensus 48 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~-g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~ 120 (394)
T PRK10213 48 QDLGISEGVAGQSVTVTAFVAMFASLFI-TQTIQATDRRYVVILFAVLLTLSCLLVSFANS------FSLLLIGRACLGL 120 (394)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHH-HHHhcccCcHHHHHHHHHHHHHHHHHHHHHCh------HHHHHHHHHHHHH
Confidence 4579999999999999999999998855 55667789999999888888776665544321 1233444455566
Q ss_pred hhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHH
Q 011424 396 LSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLM 475 (486)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~ 475 (486)
+.....+....++.|.+|+++|+++.++.....+++..++|.+.+.+.+.. ||+..|++.+++.++..+.
T Consensus 121 ~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~----------gw~~~f~~~~~l~~~~~l~ 190 (394)
T PRK10213 121 ALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELI----------GWRNVFNAAAVMGVLCIFW 190 (394)
T ss_pred hhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----------CHHHHHHHHHHHHHHHHHH
Confidence 666677888888999999999999999999999999999999999999877 8999999888777766555
Q ss_pred hhcccccc
Q 011424 476 TFKPFLAQ 483 (486)
Q Consensus 476 ~~~~~~~~ 483 (486)
... ..||
T Consensus 191 ~~~-~~p~ 197 (394)
T PRK10213 191 IIK-SLPS 197 (394)
T ss_pred HHH-HCCC
Confidence 443 3444
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.3e-10 Score=108.37 Aligned_cols=154 Identities=14% Similarity=0.103 Sum_probs=105.0
Q ss_pred CccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhh
Q 011424 316 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNL 395 (486)
Q Consensus 316 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (486)
+++|++..+.++..+...++..++.+ ..+++.||+|||+.+..+..+..++..+..+.... + .+.+..++.++
T Consensus 64 ~~~gls~~~~g~~~~~~~~~~~~~~~-~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~-----~-~l~~~r~l~G~ 136 (476)
T PLN00028 64 DNLNLTKSDIGNAGIASVSGSIFSRL-AMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSA-----T-GFIAVRFFIGF 136 (476)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCH-----H-HHHHHHHHHHH
Confidence 44799999999988888888888887 66777778899998888776666665555443211 1 22222333333
Q ss_pred hhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHH
Q 011424 396 LSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLM 475 (486)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~ 475 (486)
+..... ....++.+.+|+++||++.|+.+...++|..+++.+.+.+.+........ ...||+..|++.+++.++..+.
T Consensus 137 ~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~-~~~gWr~~f~i~g~l~l~~~l~ 214 (476)
T PLN00028 137 SLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAP-SFTAWRIAFFVPGLLHIIMGIL 214 (476)
T ss_pred HHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-chhhhHHHHHHHHHHHHHHHHH
Confidence 333332 34456788899999999999999988999999888887665543221000 0127999999988888776665
Q ss_pred hhc
Q 011424 476 TFK 478 (486)
Q Consensus 476 ~~~ 478 (486)
.++
T Consensus 215 ~~~ 217 (476)
T PLN00028 215 VLT 217 (476)
T ss_pred HHH
Confidence 554
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.8e-10 Score=102.92 Aligned_cols=146 Identities=21% Similarity=0.327 Sum_probs=111.7
Q ss_pred hHHHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhh----hcCCchhhh
Q 011424 41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD----RYGRKPVII 116 (486)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~d----r~Grr~~l~ 116 (486)
+.++.+....+...++...-..+.+.+.++.|++... .+.+--+..+...+.+|+.|..+| ||||||.++
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~------~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI 105 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQSLGVPHKW------SSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFI 105 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHHcCCCccc------ccccccccccccceecccccccccccccccccccchH
Confidence 5566666677777777777788888899999999988 888888888888999999999999 689988777
Q ss_pred HH-HHHHHHHHHHHhccchHHH------------HHHHHHHHH-----hhc-cchhhHHHHHhhhccchhhhh-HhhHHH
Q 011424 117 MG-TASVVIFNTLFGLSVNFWM------------AVLTRFLLG-----SLN-GLLGPIKAYACEIFREEHQAL-GLSTVS 176 (486)
Q Consensus 117 ~~-~~~~~~~~~~~~~a~~~~~------------l~~~r~l~G-----~~~-g~~~~~~~~i~~~~~~~~r~~-~~~~~~ 176 (486)
.. .+...++.++..++.++.. ..+.-++.| ++. -...|+.+++.|...++++.+ +.+++.
T Consensus 106 ~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~ 185 (498)
T KOG0637|consen 106 LAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFS 185 (498)
T ss_pred HHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHH
Confidence 54 5566666677777654332 222333334 333 445678999999998877777 999999
Q ss_pred HHhhhhHHHHhhhhhh
Q 011424 177 TAWGIGLIIGPALGGF 192 (486)
Q Consensus 177 ~~~~~g~~ig~~l~~~ 192 (486)
...++|..+|..++++
T Consensus 186 ~f~avGnvLGY~~g~y 201 (498)
T KOG0637|consen 186 FFMAVGNVLGYALGSY 201 (498)
T ss_pred HHHHhcceeeeecccc
Confidence 9999999999888863
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.2e-11 Score=112.08 Aligned_cols=139 Identities=14% Similarity=0.111 Sum_probs=102.4
Q ss_pred HHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHH-HHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHH
Q 011424 51 LCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMF-GRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLF 129 (486)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~-~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~ 129 (486)
++............+.+.+|.|.++++ .|++...... ...++.++.|++.||+|+|+.+..+..+.++..+..
T Consensus 218 ~l~~~~~~~~~~~~~~~l~~~G~s~~~------ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~ 291 (390)
T TIGR02718 218 LLSAMTAVSGFGLSKLYLVDAGWPLEW------IGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLW 291 (390)
T ss_pred HHHHHHHHHHHHHhhHHHHhcCCCHHH------HHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 333343444444566777789999998 9999888764 667778999999999999999988776653333222
Q ss_pred hc------cchHHHHHHHHHHHHhhccchhhH-HHHHhhhccc-hhhhhHhhHHHHHhhhhHHHHhhhhhhhcc
Q 011424 130 GL------SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFRE-EHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (486)
Q Consensus 130 ~~------a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~-~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~ 195 (486)
.. .++...+.....+.+++.|...+. .+.+.+..++ +++++.++..+...++|..+||.++|.+.+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~ 365 (390)
T TIGR02718 292 FAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTD 365 (390)
T ss_pred HHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 234444555556666766776664 7776677765 889999999999999999999999999998
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.7e-10 Score=107.82 Aligned_cols=175 Identities=12% Similarity=0.043 Sum_probs=124.2
Q ss_pred chhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHH
Q 011424 281 NWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL-GPIMVARI 359 (486)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 359 (486)
.+.++..........+..++...+.+.|+.+. +|++..+++.+.........++.+ .++++.||+ |||+.+.+
T Consensus 8 p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~-----lgls~~~a~~i~~~~~~~~~l~~l-igG~LaDRilGrrr~ili 81 (493)
T PRK15462 8 PRAIYYVVALQIWEYFSFYGMRALLILYLTNQ-----LKYDDNHAYELFSAYCSLVYVTPI-LGGFLADKVLGNRMAVML 81 (493)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHccCcHHHHHH
Confidence 34455555555555666667777888887654 789999999999888888888877 677778887 99999988
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccC--chhhHHhHHHHHHHHHHHHHhh
Q 011424 360 AGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQD--QRGAANGIAMTGMSLFKAAGPA 437 (486)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~g~~~~~~~~g~~~~~~ 437 (486)
+..+..++..++..... .... ..+...+...+.+...+...++..|.+|++ +|.++.++.++..++|+.++|.
T Consensus 82 G~il~~lg~lll~~~~~----~~~~-~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~ 156 (493)
T PRK15462 82 GALLMAIGHVVLGASEI----HPSF-LYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPI 156 (493)
T ss_pred HHHHHHHHHHHHHHhhc----chhH-HHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHH
Confidence 88887777654432111 0011 111111122233334456677889999875 7999999999999999999999
Q ss_pred hHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHh
Q 011424 438 GGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMT 476 (486)
Q Consensus 438 ~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~ 476 (486)
+.|++.+.. ||+..|.+.++..+++.+..
T Consensus 157 l~g~L~~~~----------Gw~~~F~iaaigm~l~li~~ 185 (493)
T PRK15462 157 ACGYAQEEY----------SWAMGFGLAAVGMIAGLVIF 185 (493)
T ss_pred HHHHHHhhh----------ChHHHHHHHHHHHHHHHHHH
Confidence 999998877 89999988776665555444
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.6e-09 Score=106.18 Aligned_cols=153 Identities=12% Similarity=0.139 Sum_probs=114.8
Q ss_pred HHHHHHhcccccchhhhhHhHHHHH-HHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHH---hcc-chHHHHH
Q 011424 65 YFMIKDFQIAKREEDIGSYAGYVGS-SFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLF---GLS-VNFWMAV 139 (486)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~g~~~s-~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~---~~a-~~~~~l~ 139 (486)
|.+.+++|.+..+ .+++.. ...++..++.+++|+++||+|+|+.+.++.++.++..+.. +.. ++.+.+.
T Consensus 247 ~~l~~~~G~s~~~------~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~ 320 (491)
T PRK11010 247 TFLIRGVGFDAGE------VGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMG 320 (491)
T ss_pred HHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 4556778999988 999874 5668999999999999999999998877666555544322 233 4555555
Q ss_pred HHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccCCcccccccccccCCChhh
Q 011424 140 LTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLP 218 (486)
Q Consensus 140 ~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~ 218 (486)
+.-+++.+..|...+. .++..+..+++.+++..++.+...++|..+++.++|++.+ .+ +|+..
T Consensus 321 ~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~-------~~---------G~~~~ 384 (491)
T PRK11010 321 AAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVE-------AH---------GWPTF 384 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-------Hh---------ChHHH
Confidence 5666666665655554 8888899999999999999999999999999999999998 34 44455
Q ss_pred HHHHHHHHHHHHHHHHhcCCc
Q 011424 219 CLCISLFAFGVTIAAFWLPET 239 (486)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~e~ 239 (486)
+.+..+.++..++....++++
T Consensus 385 f~~~~~~~l~~l~~~~~~~~~ 405 (491)
T PRK11010 385 YLFSVAAAVPGLLLLLVCRQT 405 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 567777777766666566554
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.3e-11 Score=117.15 Aligned_cols=148 Identities=14% Similarity=0.164 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHH
Q 011424 42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS 121 (486)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~ 121 (486)
.++...+..++............+.+.++..-+..+ .+++.+...++..++.+++++++||+|||+++.++.++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~ 296 (437)
T TIGR00792 223 QLLILCLAYLFYNLAFNIKNGVQVYYFTYVLGDPEL------FSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILL 296 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHcchhheeEeeecCChHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 344444444444444444444444444432223334 67778888999999999999999999999999999988
Q ss_pred HHHHHHHHhcc-chHHHHHHHHHHHHhhccchhhH-HHHHhhhcc-------chhhhhHhhHHHHHhhhhHHHHhhhhhh
Q 011424 122 VVIFNTLFGLS-VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFR-------EEHQALGLSTVSTAWGIGLIIGPALGGF 192 (486)
Q Consensus 122 ~~~~~~~~~~a-~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~-------~~~r~~~~~~~~~~~~~g~~ig~~l~~~ 192 (486)
.+++.++..+. ++.+.+++..++.|++.+...+. .++++|..+ ++++|...++.+....+|..+++.+.+.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ 376 (437)
T TIGR00792 297 MVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGL 376 (437)
T ss_pred HHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887776665 46677778888889988887775 888888865 4567999999999999999999999999
Q ss_pred hcc
Q 011424 193 LAQ 195 (486)
Q Consensus 193 l~~ 195 (486)
+.+
T Consensus 377 ll~ 379 (437)
T TIGR00792 377 ILG 379 (437)
T ss_pred HHH
Confidence 987
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.7e-10 Score=110.96 Aligned_cols=128 Identities=13% Similarity=-0.000 Sum_probs=102.7
Q ss_pred cccHHHH-HHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHhcc-----ch
Q 011424 61 FPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS-----VN 134 (486)
Q Consensus 61 ~~~~~~~-~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a-----~~ 134 (486)
....|.+ .+++|.++.+ .++......++..++.++.|+++||+|+|+.+.++.++..++.++.... .+
T Consensus 235 ~~~~p~~~~~~~g~~~~~------~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 308 (406)
T PRK15402 235 IALSPVILISGEQLSSYE------YGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHA 308 (406)
T ss_pred HHHhHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 3344544 5678888887 8888888888899999999999999999999999888777776666543 35
Q ss_pred HHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcc
Q 011424 135 FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (486)
Q Consensus 135 ~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~ 195 (486)
++.+++.-++.|++.+...+. ...... .++++|++..+..+....+|..+|+.+++.+.+
T Consensus 309 ~~~~~~~~~~~g~g~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~ 369 (406)
T PRK15402 309 YLWLTAGLSLYAFGIGLANAGLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYL 369 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHhh-hccccccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 677788889999988876664 444433 345899999999999999999999999999887
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.7e-10 Score=105.68 Aligned_cols=142 Identities=22% Similarity=0.218 Sum_probs=115.7
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhh
Q 011424 317 GLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLL 396 (486)
Q Consensus 317 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (486)
++|.+..+.+++.+...++..++++ ..+.+.||+|||+.+..+..+..++.....+. ...+ .+.+..++.+.+
T Consensus 26 ~~~~s~~~~~~~~~~~~~~~~~~~~-~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~l~g~~ 98 (352)
T PF07690_consen 26 ELGLSPSQIGLLFSAFFLGSALFSP-FAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA-----SNFW-LLLIARFLLGIG 98 (352)
T ss_dssp CSTTTSHCHHHHHHHHHHHHHHHHH-HHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH-----CCHH-HHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh-----hhHH-HHhhhccccccc
Confidence 3789999999999999999999998 55566666799998888888777774443332 1233 455566667777
Q ss_pred hhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHH
Q 011424 397 SVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLM 475 (486)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~ 475 (486)
.....+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+.. +|+..|++.+++.++..++
T Consensus 99 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~----------~~~~~~~~~~~~~~~~~il 167 (352)
T PF07690_consen 99 SGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYF----------GWRWAFLISAILSLIAAIL 167 (352)
T ss_dssp HHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHC----------HHCCHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcc----------ccccccccccchhhhhhhh
Confidence 77888999999999999999999999999999999999999999998766 7889999999998888775
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.3e-10 Score=108.14 Aligned_cols=168 Identities=17% Similarity=0.228 Sum_probs=121.1
Q ss_pred hhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHhcc
Q 011424 53 TALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS 132 (486)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a 132 (486)
..-+.+........+.++-|.+..+ ..+.+........+..+++..+.||+|||+.++++..++.+..+++..+
T Consensus 282 q~sGi~ai~~Yst~i~~~aG~~~~~------a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~ 355 (485)
T KOG0569|consen 282 QFSGINAIFFYSTSIFKTAGFTPEE------AQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIA 355 (485)
T ss_pred HhcCcceeHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 3334555555667888999999988 8889999999999999999999999999999999999999888877653
Q ss_pred c---hHH------HHHHHHHHHHhhccc-hhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccCC
Q 011424 133 V---NFW------MAVLTRFLLGSLNGL-LGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYP 201 (486)
Q Consensus 133 ~---~~~------~l~~~r~l~G~~~g~-~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~ 201 (486)
. +.. ..+++.++..++.+. ..|. .-+.+|.+|++.|+.++++......+...+-...-..+.+
T Consensus 356 ~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~------ 429 (485)
T KOG0569|consen 356 LFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQN------ 429 (485)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 1 111 123444444444333 3454 8889999999999999999988888888777666666665
Q ss_pred cccccccccccCCChhhHHHHHHHHHH-HHHHHHhcCCcccCC
Q 011424 202 NLFSSESLFGKFPYFLPCLCISLFAFG-VTIAAFWLPETLHRH 243 (486)
Q Consensus 202 ~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~ 243 (486)
.+|- .. ++...+++++ .+..+..+|||+.+.
T Consensus 430 -~~g~---------~~-filF~i~~~~~~i~~~~~lPETkgr~ 461 (485)
T KOG0569|consen 430 -VIGP---------YV-FILFVIPLAIFLIYLYRYLPETKGRT 461 (485)
T ss_pred -Hhcc---------hh-hHHHHHHHHHHHHHHHHhCcccCCCC
Confidence 2221 11 2333344444 456778899997654
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.2e-10 Score=109.83 Aligned_cols=137 Identities=18% Similarity=0.166 Sum_probs=100.0
Q ss_pred hhhhhhhhcccHHHHHHH-hcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHH-H--
Q 011424 53 TALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNT-L-- 128 (486)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~-~-- 128 (486)
............|.+.++ +|.+..+ .++....+.++..++.++.|+++||+|||+++.++..+..+... .
T Consensus 250 ~~~~~~~~~~~~p~~l~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~ 323 (434)
T PRK15075 250 TTVSFYLITVYTPTFGKTVLHLSAAD------SLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALS 323 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 344445566667876655 7998887 88888889999999999999999999999998876554433221 1
Q ss_pred -HhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHH-HhhhhHHHHhhhhhhhcc
Q 011424 129 -FGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVST-AWGIGLIIGPALGGFLAQ 195 (486)
Q Consensus 129 -~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~ig~~l~~~l~~ 195 (486)
....+++..+.+..++.|++.+...+. ..++.|.+|+++|++++++... +..++..++|.+.+++.+
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~ 393 (434)
T PRK15075 324 WLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIH 393 (434)
T ss_pred HHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHH
Confidence 112345545555566666766666664 7788999999999999998644 444557789999999998
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-10 Score=111.13 Aligned_cols=154 Identities=16% Similarity=0.151 Sum_probs=107.8
Q ss_pred HHHHHHHHHHhhhhhhhhcccHHHHH-HHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCC-chhhh-HHH
Q 011424 43 LFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGR-KPVII-MGT 119 (486)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Gr-r~~l~-~~~ 119 (486)
++.+.+..+.............|.+. +++|.+..+ .++..+...++..++.++.|+++||.++ |+... ...
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~ 291 (379)
T TIGR00881 218 LWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEK------ASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFF 291 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHH
Confidence 34444455555555555556666554 567998888 8999999999999999999999998643 33222 211
Q ss_pred -HHHHHHHHHHhc--cchHHHHHHHHHHHHhhccchhh-HHHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcc
Q 011424 120 -ASVVIFNTLFGL--SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (486)
Q Consensus 120 -~~~~~~~~~~~~--a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~ 195 (486)
....++...... ..+.....+..++.|+......+ ...++.|.+|+++|+++.++.+....+|..++|.+.+.+.+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 371 (379)
T TIGR00881 292 MALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLAD 371 (379)
T ss_pred HHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHH
Confidence 122222222222 34556666677777775444444 47788999999999999999999999999999999999998
Q ss_pred cCccCCcccccccc
Q 011424 196 PAEKYPNLFSSESL 209 (486)
Q Consensus 196 ~~~~~~~~~gw~~~ 209 (486)
.+||+..
T Consensus 372 -------~~g~~~~ 378 (379)
T TIGR00881 372 -------GFGWAGA 378 (379)
T ss_pred -------hhccccc
Confidence 6666543
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.4e-10 Score=110.85 Aligned_cols=147 Identities=12% Similarity=0.080 Sum_probs=95.7
Q ss_pred HHHHHHHHHHhhhhhhhhcccHHHHHHH-hcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHH
Q 011424 43 LFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS 121 (486)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~ 121 (486)
++...+..++............|.+.++ .|.+..+ .++....+.++..++.++.|+++||+++|+....+...
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~------~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~ 326 (438)
T TIGR00712 253 LWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDK------SSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFF 326 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhh------HHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHH
Confidence 3333344444444444555677766655 6888888 89999999999999999999999999754432333322
Q ss_pred HH---HHHHHHhc--cchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhh-HHHHhhhhhhhc
Q 011424 122 VV---IFNTLFGL--SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIG-LIIGPALGGFLA 194 (486)
Q Consensus 122 ~~---~~~~~~~~--a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g-~~ig~~l~~~l~ 194 (486)
.. ++.+.... ..+.+...+.-++.|++....... .....|.+|+++|+++.|+.+....+| ..++|.+.|.+.
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~ 406 (438)
T TIGR00712 327 MTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV 406 (438)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHH
Confidence 21 12222222 234444444445555542222222 456789999999999999998877776 578999999999
Q ss_pred c
Q 011424 195 Q 195 (486)
Q Consensus 195 ~ 195 (486)
+
T Consensus 407 ~ 407 (438)
T TIGR00712 407 D 407 (438)
T ss_pred H
Confidence 8
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.6e-10 Score=107.55 Aligned_cols=178 Identities=11% Similarity=0.051 Sum_probs=129.5
Q ss_pred ccchh-hHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHh-hhhHHH
Q 011424 279 LKNWP-LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI-LGPIMV 356 (486)
Q Consensus 279 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 356 (486)
+++|+ ++......++..+..+....+++.|+.+. .++|++..+++...+...++..++++ .++++.|| +|||+.
T Consensus 6 ~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~---~~lg~s~~~ag~~~~~~~~~~~~~~~-~~G~laDr~~G~~~~ 81 (475)
T TIGR00924 6 FGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQ---AGLGFSQEQAFIIFGAYSALVYLLTS-VGWWFGDRVWGTKKT 81 (475)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCCCCHHHHHHHHHHHHHHHHHHHh-hHHHHHHhhcchHHH
Confidence 34443 44455555555666677777888887542 12689999999999999999999988 56666666 899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCc---hhhHHhHHHHHHHHHHH
Q 011424 357 ARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQ---RGAANGIAMTGMSLFKA 433 (486)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~g~~~~~~~~g~~ 433 (486)
+..+..+..++...+.+... .+ .+.+...+.+.+.+...+....+..+.+|+++ |+++.++.+...++|..
T Consensus 82 l~~~~~~~~~g~~~~~~~~~-----~~-~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ 155 (475)
T TIGR00924 82 MVLGGIVLMLGHFMLAMSIY-----PD-LIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSF 155 (475)
T ss_pred HHHHHHHHHHHHHHHHhccc-----Hh-HHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHH
Confidence 99998888877766654321 11 22223333445555566777888888887654 88999999999999999
Q ss_pred HHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHh
Q 011424 434 AGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMT 476 (486)
Q Consensus 434 ~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~ 476 (486)
+||.+.+++.+.. ||+..|.+.++..+++.+..
T Consensus 156 ig~~l~g~l~~~~----------g~~~~f~~~~~~~~~~~l~~ 188 (475)
T TIGR00924 156 ISPLLAGVIAENY----------GYHVGFNLAAVGMVIGLLTF 188 (475)
T ss_pred HHHHHHHHHHHhc----------ChHHHHHHHHHHHHHHHHHH
Confidence 9999999999876 79999988776666554443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.1e-10 Score=105.79 Aligned_cols=153 Identities=14% Similarity=0.104 Sum_probs=129.1
Q ss_pred ccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 011424 314 KLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVK 393 (486)
Q Consensus 314 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (486)
..++.++|..+.|.+.+...+..-++.. +.+.++||.++|..+..+++++++..+++++.... ..+.++..+.
T Consensus 55 l~e~~~lsk~~lG~i~s~f~i~YG~sKf-~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~------~~~~~l~~ln 127 (448)
T COG2271 55 LIEDGGLSKTQLGILGSAFSITYGVSKF-VMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSL------FLFAVLWVLN 127 (448)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHH-HhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHH------HHHHHHHHHH
Confidence 3344679999999999999999999998 77888888899999999999999999888876532 2455556667
Q ss_pred hhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhH--HHHHHHHhhhcCCCCCCchhHHHHHHHHHHHH
Q 011424 394 NLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGG--GALFSWAQKRLDASFLPGSQMVFFVLNVVEAI 471 (486)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~--g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~ 471 (486)
+.+.+...|.....+.+-+|+++||+..++-|+..++|+++.|.+. +.+.++. +|+..|++-++++++
T Consensus 128 g~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~----------~w~~~f~~pgiiaii 197 (448)
T COG2271 128 GWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHG----------GWRAAFYFPGIIAII 197 (448)
T ss_pred HHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhcc----------chhHHHHHHHHHHHH
Confidence 7788888888888888889999999999999999999999999999 7777766 799999999999888
Q ss_pred HHHHhhccccccC
Q 011424 472 GVLMTFKPFLAQR 484 (486)
Q Consensus 472 ~~~~~~~~~~~~~ 484 (486)
..++.++ ..+++
T Consensus 198 val~~~~-~~rd~ 209 (448)
T COG2271 198 VALILLF-LLRDR 209 (448)
T ss_pred HHHHHHH-HhCCC
Confidence 8887776 45554
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.3e-10 Score=112.28 Aligned_cols=136 Identities=21% Similarity=0.123 Sum_probs=104.1
Q ss_pred HHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHhccchH--HHHHHHHHHHHhhccchhhH-HHHHhhhcc
Q 011424 88 GSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF--WMAVLTRFLLGSLNGLLGPI-KAYACEIFR 164 (486)
Q Consensus 88 ~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~--~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~ 164 (486)
.....+....+.++.+++.||+|||+++.++.++.+++.++..+.++. +...+.-++.+++.+...+. ..+..|.+|
T Consensus 361 ~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 440 (505)
T TIGR00898 361 LFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYP 440 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 334556677888999999999999999999999988888877776543 44555556666665555554 889999999
Q ss_pred chhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccCCcccccccccccCCChhhHHHHHHHHHHHHHHHHhcCCccc
Q 011424 165 EEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLH 241 (486)
Q Consensus 165 ~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 241 (486)
++.|++++|+.+....+|.+++|.+.+ +.+ .++..++.+.++..++..+..+++||++.
T Consensus 441 ~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~lpet~~ 499 (505)
T TIGR00898 441 TVVRNLGVGVCSTMARVGSIISPFLVY-LGE-----------------KWLFLPLVLFGGLALLAGILTLFLPETKG 499 (505)
T ss_pred HHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH-----------------HHHhhHHHHHHHHHHHHHHHHHcCcCCCC
Confidence 999999999999999999999999988 432 22334455666666666666778888764
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.9e-10 Score=105.65 Aligned_cols=140 Identities=12% Similarity=0.031 Sum_probs=108.7
Q ss_pred HHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhc-CCchhhhHHHHHHHHHHH
Q 011424 49 IVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-GRKPVIIMGTASVVIFNT 127 (486)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~ 127 (486)
..++...........+|.+.++.|.+..+ .+.+.+...++..++.++.|++.||+ +||+.+.++.++.+++.+
T Consensus 205 ~~~~~~~~~~~~~~~lp~~~~~~g~~~~~------~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~ 278 (355)
T TIGR00896 205 FFGLQSGLYYSLIGWLPAILISHGASAAT------AGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLC 278 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHH
Confidence 33334444445556778888888998888 99999999999999999999999999 567777788888888777
Q ss_pred HHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhc-cchhhhhHhhHHHHHhhhhHHHHhhhhhhhcc
Q 011424 128 LFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIF-REEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (486)
Q Consensus 128 ~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~ 195 (486)
...+.++..... .-++.|++.|...+. .+.+.+.. ++++++...++.+....+|..++|.+.|++.+
T Consensus 279 ~~~~~~~~~~~~-~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~ 347 (355)
T TIGR00896 279 GLLFAPMHGLWA-WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHD 347 (355)
T ss_pred HHHHhhhhHHHH-HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776665433322 456789998887775 66666555 45677899999888888999999999999998
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.8e-10 Score=105.84 Aligned_cols=149 Identities=17% Similarity=0.268 Sum_probs=123.9
Q ss_pred hHHHHHHHHHHHhhhhhhhhcccHHHHHHHhc-ccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHH
Q 011424 41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQ-IAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT 119 (486)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~ 119 (486)
+++....+..++.......+....+.+.+|.| .+... .+.+.++..+.-++.-...+++..|+|.|+++.++.
T Consensus 207 ~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~------~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~ 280 (400)
T PF03825_consen 207 PRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGST------IGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLAL 280 (400)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhH------HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 34555556667777777888888888899988 66666 788888888888899999999999999999999999
Q ss_pred HHHHHHHHHHhcc-chHHHHHH----HHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHH-HhhhhHHHHhhhhhh
Q 011424 120 ASVVIFNTLFGLS-VNFWMAVL----TRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVST-AWGIGLIIGPALGGF 192 (486)
Q Consensus 120 ~~~~~~~~~~~~a-~~~~~l~~----~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~ig~~l~~~ 192 (486)
+.+++=..+++.. ++.+...+ ...+.|+..+....+ ..++.+..|++.|+++.++++. ..++|..+|..++|+
T Consensus 281 ~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~ 360 (400)
T PF03825_consen 281 VAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGW 360 (400)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999888888876 55544433 345699998888876 9999999999999999998876 468999999999999
Q ss_pred hcc
Q 011424 193 LAQ 195 (486)
Q Consensus 193 l~~ 195 (486)
+.+
T Consensus 361 l~~ 363 (400)
T PF03825_consen 361 LYD 363 (400)
T ss_pred HHH
Confidence 999
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.5e-10 Score=110.62 Aligned_cols=131 Identities=17% Similarity=0.137 Sum_probs=98.8
Q ss_pred hhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHhccc--h-
Q 011424 58 SSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV--N- 134 (486)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~--~- 134 (486)
.......|.+.++.|.+..+ ..+......+...++.++.|+++||+|||++++.+.++.+++.++.+... +
T Consensus 288 ~~~~~~~p~i~~~~g~~~~~------~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~ 361 (479)
T PRK10077 288 NVVLYYAPEIFKTLGASTDI------ALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQA 361 (479)
T ss_pred hHHHHHHHHHHHHcCCCCch------HHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCc
Confidence 34445568888889988776 66777778888899999999999999999999999999888877765431 1
Q ss_pred HH-HHHHHHHHHHhhccc-hhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhc
Q 011424 135 FW-MAVLTRFLLGSLNGL-LGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA 194 (486)
Q Consensus 135 ~~-~l~~~r~l~G~~~g~-~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~ 194 (486)
.+ ....+-++.+.+.+. ..|. ..++.|.+|+++|++++++......+|.++++.+.+.+.
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~ 424 (479)
T PRK10077 362 PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMD 424 (479)
T ss_pred ccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 11 222333444444332 3454 899999999999999999999999999998877665544
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.6e-09 Score=106.39 Aligned_cols=178 Identities=10% Similarity=-0.041 Sum_probs=123.4
Q ss_pred ccccccchh-hHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHh-hh
Q 011424 275 KKSLLKNWP-LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI-LG 352 (486)
Q Consensus 275 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 352 (486)
..+.+++|+ ++......++..+..+....+.+.|+.+. +|++..+++..............+ .++++.|| +|
T Consensus 13 ~~~~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~-----lg~s~~~a~~~~~~~~~~~~~~~~-~~G~LaDr~~G 86 (500)
T PRK09584 13 SLNAFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQ-----LGMSEADSITLFSSFSALVYGLVA-IGGWLGDKVLG 86 (500)
T ss_pred ChhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccc
Confidence 344556664 66666666776677677777788887654 788888887777665544444434 67788888 59
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCc--hhhHHhHHHHHHHH
Q 011424 353 PIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQ--RGAANGIAMTGMSL 430 (486)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~g~~~~~~~~ 430 (486)
||+.+..+..+..++...+.+... ....+.+...+.+.+.+...+....+..+.+|+++ +..+.++.++..++
T Consensus 87 ~r~~~~~g~~~~~ig~~l~~~~~~-----~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~i 161 (500)
T PRK09584 87 TKRVIMLGAIVLAIGYALVAWSGH-----DAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINI 161 (500)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcc-----cHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHH
Confidence 999999888877777665544321 11122222233444555556677778888887543 45678888999999
Q ss_pred HHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHH
Q 011424 431 FKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGV 473 (486)
Q Consensus 431 g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~ 473 (486)
|..++|.+.|++.+.. ||+..|.+.++..+++.
T Consensus 162 G~~~gp~i~g~l~~~~----------g~~~~F~i~~i~~~i~~ 194 (500)
T PRK09584 162 GSFFSMLATPWLAAKY----------GWSVAFALSVVGMLITV 194 (500)
T ss_pred HHHHHHHHHHHHHHhh----------CHHHHHHHHHHHHHHHH
Confidence 9999999999999877 89999998776555544
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.6e-09 Score=96.15 Aligned_cols=375 Identities=13% Similarity=0.047 Sum_probs=206.6
Q ss_pred CCChhHHHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhh-----hcCC
Q 011424 37 GLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD-----RYGR 111 (486)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~d-----r~Gr 111 (486)
+..+++++.+.+.+++++...+... .+|.+.+.-|.|.++ .+...-++ .. ..--+.|.++.| |+||
T Consensus 27 ~~d~~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~------~a~fS~ay-~P-~sLKllWaPiVDs~y~k~~Gr 97 (510)
T KOG3574|consen 27 KGDRSSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTS------QAIFSFAY-WP-FSLKLLWAPIVDSVYSKRFGR 97 (510)
T ss_pred hhhhhhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhh------hhhhhhhh-hH-HHHHHHHHhhhHHHHHHhhcc
Confidence 3345667788888899999999888 999999988888877 44332222 12 123467889999 9999
Q ss_pred chhhhH-HHHHHHHHHHHHhc-----------cchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHH
Q 011424 112 KPVIIM-GTASVVIFNTLFGL-----------SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTA 178 (486)
Q Consensus 112 r~~l~~-~~~~~~~~~~~~~~-----------a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~ 178 (486)
||..++ +..+.+......+. .++...+...-++.-+..+....+ -.+.-.+..+++.|.+......+
T Consensus 98 rksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg 177 (510)
T KOG3574|consen 98 RKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVG 177 (510)
T ss_pred ccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHH
Confidence 998665 33333333333322 234444544556666666666665 66767777888888777777767
Q ss_pred hhhhHHHHhhhhhhhcccCccCCcccccc--cccccCCChhhHHHHHHHHHHHHHHHHhcCCcccCCCCCCCcccchhhh
Q 011424 179 WGIGLIIGPALGGFLAQPAEKYPNLFSSE--SLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDA 256 (486)
Q Consensus 179 ~~~g~~ig~~l~~~l~~~~~~~~~~~gw~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 256 (486)
.+.|..++..+--.+...........+|. ..+-..+ -...+-+...+++-....+..++++....++.+..
T Consensus 178 ~~~GyfL~~~ifLaL~s~dF~N~y~rs~P~~~g~ItL~--gy~~fwg~~~~vat~Lv~~~kke~~~~~~~e~~~~----- 250 (510)
T KOG3574|consen 178 QTAGYFLGNVVFLALESPDFCNTYLRSIPLDQGFITLA--GYLWFWGALFIVATTLVALLKKENDESVDEELELG----- 250 (510)
T ss_pred HhhhHHhhcceeeEecChhhhhHHHhcCcCccceEEhh--HHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhcC-----
Confidence 77776666554333322111111112222 0000000 00112233333333333333333322211111000
Q ss_pred ccccccchhhhcccCCCcccccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHH
Q 011424 257 LESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSL 336 (486)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 336 (486)
.....+..+++++-|............-....+-....++-+. +.|.+.++.++...+.--..
T Consensus 251 -----------i~~~yk~l~~vLklk~v~~la~i~lt~K~gf~a~da~t~LkLl------e~Gv~ke~Lal~~v~~~plq 313 (510)
T KOG3574|consen 251 -----------IHESYKLLRDVLKLKSVRWLAGILLTGKLGFQAADALTSLKLL------EHGVPKEELALIAVPLVPLQ 313 (510)
T ss_pred -----------HHHHHHHHHHHHcCccHHHHHHHHHHHHHHhhhhhhccchHHH------HcCCChhHheeeeeehhhHH
Confidence 0011123456677777766666655555554444444443333 36888888887765555555
Q ss_pred HHHHHHHHHHHHHhhh-----hHHHHHHHHHHHHHHHHHHHHHHhhhh-------hhHHHHHHHHHHHHhhhhhhhhhhh
Q 011424 337 LVFQLSLYPFLERILG-----PIMVARIAGVLTIPLLTSYPYIAMLSG-------FGLAFLLNCASVVKNLLSVSIITGL 404 (486)
Q Consensus 337 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (486)
++.....+++..+... |+...++.... ...++.+...... .......+....+...+........
T Consensus 314 I~l~~~~gk~ta~~~pl~~~lka~~~R~~~~~---~~t~Lv~~~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~ 390 (510)
T KOG3574|consen 314 IALPLYIGKWTAGPRPLNVFLKAVPYRLGGGL---VQTALVWWTPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFVSG 390 (510)
T ss_pred HhhhhhheeecCCCCcchHHHHhhhHHHHHHH---HHHHHHhhhcccccCCCceeechHHHHHHHHHHhhhHHHHHHHHH
Confidence 5555555555553211 11112222211 1122222111111 1223333334455555666666667
Q ss_pred hhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHh
Q 011424 405 FILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQ 447 (486)
Q Consensus 405 ~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~ 447 (486)
.+..+++.||...|+.+.+.|+..++|+-.-..++.++.|...
T Consensus 391 maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~lt 433 (510)
T KOG3574|consen 391 MAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGLT 433 (510)
T ss_pred HHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccCc
Confidence 7788888999999999999999999999988888888888653
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.4e-10 Score=110.69 Aligned_cols=175 Identities=15% Similarity=0.225 Sum_probs=147.8
Q ss_pred HHHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcC--CchhhhHHH
Q 011424 42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG--RKPVIIMGT 119 (486)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~G--rr~~l~~~~ 119 (486)
.++.+.+...+..++.......+|.+.++.+.++.+ .+.+.++..+...++.++.|+++|+.. ++.+..+++
T Consensus 299 ~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~------aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~l 372 (509)
T KOG2504|consen 299 KFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSND------AAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTL 372 (509)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhh------hHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHH
Confidence 455666677777788888888889999999999999 999999999999999999999999988 456677888
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCc
Q 011424 120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE 198 (486)
Q Consensus 120 ~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~ 198 (486)
++.+++.+.++++++++.++..-.+.|++.|..... ...+.|..+.++-..+.|+.....+++..+||++++.+.+..
T Consensus 373 l~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~t- 451 (509)
T KOG2504|consen 373 LIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDIT- 451 (509)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeecc-
Confidence 888899999999999999999999999999998887 668899999999999999999999999999999999888832
Q ss_pred cCCcccccccccccCCChhhHHHHHHHHHHHHHHHHhcC
Q 011424 199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLP 237 (486)
Q Consensus 199 ~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (486)
| .|...+...++..++....++..|
T Consensus 452 ------g--------~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 452 ------G--------NYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred ------C--------CeeeehhhcChHHHHHHHHHHHhH
Confidence 2 133444566666666555555555
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.5e-10 Score=106.83 Aligned_cols=135 Identities=13% Similarity=0.070 Sum_probs=88.1
Q ss_pred hhhhhhhcccHHHHH-HHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHh--
Q 011424 54 ALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFG-- 130 (486)
Q Consensus 54 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~-- 130 (486)
..........+|.+. +++|.+..+ .+...++..++..+++++.|+++||+|||+++.++.++.++......
T Consensus 256 ~~~~~~~~~~lp~~l~~~~g~s~~~------~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~ 329 (432)
T PRK10406 256 SLCFYTFTTYMQKYLVNTAGMHANV------ASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSA 329 (432)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHH
Confidence 344444556677654 567888877 88888888888889999999999999999988776655433332111
Q ss_pred --ccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhh-hHHHHhhhhhhhc
Q 011424 131 --LSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGI-GLIIGPALGGFLA 194 (486)
Q Consensus 131 --~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~ig~~l~~~l~ 194 (486)
..++....+..-.+.++..+...+. ..++.|++|++.|++++|+.+...++ .....|.+.+.+.
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~ 397 (432)
T PRK10406 330 LQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLK 397 (432)
T ss_pred HHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHH
Confidence 1223332222222222333333343 77889999999999999998765443 3444777777553
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.3e-09 Score=107.34 Aligned_cols=150 Identities=16% Similarity=0.079 Sum_probs=114.3
Q ss_pred CccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhh
Q 011424 316 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNL 395 (486)
Q Consensus 316 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (486)
+++|.+..+.++..+.+.++.....+ ..+++.||+|||+.+..+..+..++.+........ ..+++.-.+.+.
T Consensus 34 ~~l~~s~~~~~~~~~~~~l~~~~~~~-~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~------~~li~~r~l~G~ 106 (495)
T PRK14995 34 MTLGASGNELLWIIDIYSLVMAGMVL-PMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTA------SWLIATRALLAI 106 (495)
T ss_pred HHhCCCHhHHHHHHHHHHHHHHHHHH-HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHH
Confidence 34788899999999999888888877 56677777899999999888887777766554321 133344445555
Q ss_pred hhhhhhhhhhhhhhhcc-ccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHH
Q 011424 396 LSVSIITGLFILQNRAV-DQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVL 474 (486)
Q Consensus 396 ~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~ 474 (486)
+.....+.......+.+ |+++|+++.|+......+|..+||.+.|.+.+.. ||++.|++...+.++..+
T Consensus 107 g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~----------gwr~~f~i~~~~~~~~~~ 176 (495)
T PRK14995 107 GAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHF----------YWGSVFLINVPIVLVVMG 176 (495)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC----------ChHHHHHHHHHHHHHHHH
Confidence 66666666666555544 6799999999999999999999999999999877 899999998877777766
Q ss_pred Hhhcccccc
Q 011424 475 MTFKPFLAQ 483 (486)
Q Consensus 475 ~~~~~~~~~ 483 (486)
+..+ .+|+
T Consensus 177 l~~~-~l~~ 184 (495)
T PRK14995 177 LTAR-YVPR 184 (495)
T ss_pred HHHH-hCCC
Confidence 6555 3444
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=9.5e-10 Score=105.62 Aligned_cols=151 Identities=13% Similarity=0.113 Sum_probs=113.4
Q ss_pred CccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhh
Q 011424 316 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNL 395 (486)
Q Consensus 316 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (486)
++++.+..+.+...+...++..++++ ..+.+.||+|||+.+..+..+..++.....+... . ..+++.-++.+.
T Consensus 44 ~~~~~~~~~~~~~~s~~~~~~~~~~~-~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~-----~-~~l~~~r~l~Gi 116 (413)
T PRK15403 44 RDFNADVSLAPASVSLYLAGGMALQW-LLGPLSDRIGRRPVLITGALIFTLACAATLFTTS-----M-TQFLIARFIQGT 116 (413)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHH-hhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCC-----H-HHHHHHHHHHHH
Confidence 34788999999999999999999988 6677778889999998887776666655544321 1 123333344444
Q ss_pred hhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHH
Q 011424 396 LSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLM 475 (486)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~ 475 (486)
+.....+.......|.+|+++++++.++.+....++..++|.+.+.+.+.. ||+..|++.+++.++..+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~----------gw~~~f~~~~~~~~i~~~~ 186 (413)
T PRK15403 117 SICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFV----------HWKVLFAIIAVMGLIAFVG 186 (413)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CHHHHHHHHHHHHHHHHHH
Confidence 444444555677888899999999999999999999999999999988776 8999999988887877665
Q ss_pred hhccccccC
Q 011424 476 TFKPFLAQR 484 (486)
Q Consensus 476 ~~~~~~~~~ 484 (486)
.++ ..||+
T Consensus 187 ~~~-~lp~~ 194 (413)
T PRK15403 187 LLL-AMPET 194 (413)
T ss_pred HHH-hCCCC
Confidence 444 35553
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.6e-10 Score=110.15 Aligned_cols=146 Identities=18% Similarity=0.083 Sum_probs=115.8
Q ss_pred CccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhh
Q 011424 316 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNL 395 (486)
Q Consensus 316 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (486)
+++|.+..+.++..+...++..++.+ ..+++.||+|||+.+..+..+..++......... ...+.+..++.+.
T Consensus 30 ~~~g~s~~~~~~~~~~~~~~~~~~~~-~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~G~ 102 (485)
T TIGR00711 30 GDLGSSLSQVQWVITSYMLANAISIP-LTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPN------LELMIIFRVIQGF 102 (485)
T ss_pred HhcCCChhhhhHHHHHHHHHHHHHHH-hHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCC------HHHHHHHHHHHHh
Confidence 33788999999999999999999988 6667777889999998888777776665544321 2234445556666
Q ss_pred hhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHH
Q 011424 396 LSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLM 475 (486)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~ 475 (486)
+.....+....++.|.+|+++|+++.++......+|..++|.+.+++.+.. +|++.|++.+.+.++..+.
T Consensus 103 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~----------~w~~~f~~~~~~~~~~~~~ 172 (485)
T TIGR00711 103 GGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENY----------HWRWIFLINVPIGIIVVVV 172 (485)
T ss_pred hhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCc----------CceehhhhhhHHHHHHHHH
Confidence 667778888899999999999999999999999999999999999998765 7899998887777666655
Q ss_pred hhc
Q 011424 476 TFK 478 (486)
Q Consensus 476 ~~~ 478 (486)
..+
T Consensus 173 ~~~ 175 (485)
T TIGR00711 173 AFF 175 (485)
T ss_pred HHH
Confidence 544
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.4e-09 Score=104.03 Aligned_cols=151 Identities=13% Similarity=0.088 Sum_probs=112.8
Q ss_pred CccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhh
Q 011424 316 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNL 395 (486)
Q Consensus 316 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (486)
+++|.+..+.++..+...++..++.+ ..+++.||+|||+.+..+.....+.......... .+ ...+..++.+.
T Consensus 31 ~~~~~s~~~~~~~~~~~~~~~~~~~~-~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~-----~~-~~~~~~~l~g~ 103 (392)
T PRK10473 31 ADLNASEAQLHIAFSVYLAGMAAAML-FAGKIADRSGRKPVAIPGAALFIIASLLCSLAET-----SS-LFLAGRFLQGI 103 (392)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHH-hHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCc-----HH-HHHHHHHHHHh
Confidence 34788999999999999999989888 5666677779999988887776666655544321 11 22333344455
Q ss_pred hhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHH
Q 011424 396 LSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLM 475 (486)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~ 475 (486)
......+....+..|.+|+++|+++.++.+....++..++|.+.+.+.+.. +|+..|++.+++.++..++
T Consensus 104 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~----------g~~~~~~~~~~~~~i~~~~ 173 (392)
T PRK10473 104 GAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKF----------PWQSLFYTMAAMGILVLLL 173 (392)
T ss_pred hhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc----------ChHHHHHHHHHHHHHHHHH
Confidence 555566777888899999999999999999999999999999988887655 7888998888877777666
Q ss_pred hhccccccC
Q 011424 476 TFKPFLAQR 484 (486)
Q Consensus 476 ~~~~~~~~~ 484 (486)
.+. ..||+
T Consensus 174 ~~~-~~~~~ 181 (392)
T PRK10473 174 SLF-ILKET 181 (392)
T ss_pred HHH-HcCCC
Confidence 544 34443
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.9e-09 Score=102.93 Aligned_cols=168 Identities=12% Similarity=-0.017 Sum_probs=120.1
Q ss_pred chhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 011424 281 NWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIA 360 (486)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (486)
+|+++...+..++..+.........+.+. .+++.++.+.++......+...+..+ ..+.+.||++||+++..+
T Consensus 2 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~s~~~~~~~~~~~~l~~~l~~~-~~G~laDr~grr~vl~~~ 74 (393)
T PRK11195 2 SKGFYAIMAAQFFSALADNALLFAAIALL------KELHYPDWSQPLLQMFFVLAYIVLAP-FVGAFADSFPKGRVMFIA 74 (393)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHH------HHcCCcHHHHHHHHHHHHHHHHHHHh-hhhHhhhccCCchhhHHH
Confidence 34566666666665554333333333222 22577888899999999999999988 667777888999999988
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHH
Q 011424 361 GVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGG 440 (486)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g 440 (486)
..+..+..+...+... . .+.-++.+.+.....|...+++.|.+|+++|++++|+.+....++..+||.++|
T Consensus 75 ~~~~~~~~~~~~~~~~-----~----~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG 145 (393)
T PRK11195 75 NGIKLLGCLLMLFGIH-----P----LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGG 145 (393)
T ss_pred HHHHHHHHHHHHHHHH-----H----HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777665554433221 1 223345566777888999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHH
Q 011424 441 ALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLM 475 (486)
Q Consensus 441 ~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~ 475 (486)
.+.+.. +...+.+.+.+.+++.+.
T Consensus 146 ~l~~~~-----------~~~~~~i~~~~~~~~~~~ 169 (393)
T PRK11195 146 ALADPH-----------AEAALAVCALIYLLAALF 169 (393)
T ss_pred HHHHHH-----------HHHHHHHHHHHHHHHHHH
Confidence 999864 555666655554444433
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.7e-09 Score=103.63 Aligned_cols=150 Identities=19% Similarity=0.102 Sum_probs=109.1
Q ss_pred CccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhh
Q 011424 316 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNL 395 (486)
Q Consensus 316 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (486)
+++|.++.+.++..+...++..++.+ ..+.+.||+|||+.+..+.....+.......... ...+.+..++.+.
T Consensus 36 ~~~~~s~~~~~~~~~~~~~~~~~~~~-~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~g~ 108 (394)
T PRK11652 36 RDLNVREGAVQAVMAAYLLTYGLSQL-FYGPLSDRVGRRPVILVGMSIFILGTLVALFAHS------LTVLIAASAIQGL 108 (394)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHH-hhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHcc------HHHHHHHHHHHHh
Confidence 44799999999999999999999988 5566667789999988887766666555443221 1123333344444
Q ss_pred hhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHH
Q 011424 396 LSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLM 475 (486)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~ 475 (486)
+.....+....+..+..++++++.+.+..+....++..++|.+.+.+.+.. ||+..|++.+++.++..+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~----------g~~~~f~~~~~~~~~~~~~ 178 (394)
T PRK11652 109 GTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLF----------GWRACYLFLLLLGAGVTFS 178 (394)
T ss_pred hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------ChHHHHHHHHHHHHHHHHH
Confidence 444445566667778888899999999999999999999999999988765 7999998887766655544
Q ss_pred hhcccccc
Q 011424 476 TFKPFLAQ 483 (486)
Q Consensus 476 ~~~~~~~~ 483 (486)
... ..||
T Consensus 179 ~~~-~~~~ 185 (394)
T PRK11652 179 MAR-WMPE 185 (394)
T ss_pred HHH-hCCc
Confidence 433 3454
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.6e-10 Score=99.83 Aligned_cols=148 Identities=16% Similarity=0.201 Sum_probs=122.2
Q ss_pred HHHHHHHHHHhhhhhhhhcccHHHHH-HHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHH
Q 011424 43 LFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS 121 (486)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~ 121 (486)
+....++.++..-+.+.....-..+. .++|++..+ ..++.-...+..+++++++|+|.||+|.|+++.+++++
T Consensus 254 i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~------lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi 327 (438)
T COG2270 254 LVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTE------LLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVI 327 (438)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHH
Confidence 33333333333333344444444444 499999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhccc
Q 011424 122 VVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP 196 (486)
Q Consensus 122 ~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~ 196 (486)
..+.++..-+...-..+.++-.+.|...|..... .++.++..|+++-++.+|+++...-.+..+||.+-+.+.+.
T Consensus 328 ~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~i 403 (438)
T COG2270 328 LSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQI 403 (438)
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHH
Confidence 9998888777776677777888999998887775 99999999999999999999999999999999999999883
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.8e-09 Score=100.12 Aligned_cols=177 Identities=12% Similarity=0.013 Sum_probs=116.6
Q ss_pred hHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 011424 284 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVL 363 (486)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (486)
++...+..++.......+..+.|.++.+ ++|+++.+.++..+...++..++.+ ..+++.||+|||+.+..+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~s~~~~~~~~~~~~~~~~~~~~-~~g~l~dr~g~r~~~~~~~~~ 76 (366)
T TIGR00886 3 LFFSWFGFFLSFSVWFAFSPLAVQMIKD-----DLGLSTAQLGNLVAVPVLAGAVLRI-ILGFLVDKFGPRYTTTLSLLL 76 (366)
T ss_pred hHHHHHHHHHHHHHHHHhHHhhhHHHHH-----HhCCCHHHhhHhhHHHHHHHHHHHH-HHHHHHHHhCchHHHHHHHHH
Confidence 4445555555555555555555543333 3799999999999999999999998 566667778999999888888
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHH
Q 011424 364 TIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALF 443 (486)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~ 443 (486)
..++.....+... ....+.+..++.+.... ..+....++.+.+|+++|+++.++.....++|..+++.+.+.+.
T Consensus 77 ~~i~~~~~~~~~~-----~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~ 150 (366)
T TIGR00886 77 LAIPCLWAGLAVQ-----SYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPII 150 (366)
T ss_pred HHHHHHHHHHHhh-----hHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 7777766655431 11122233333444433 34455677888899999999999999889999999988888877
Q ss_pred HHHhhhcCCCCCCchhHHH-HHHHHHHHHH
Q 011424 444 SWAQKRLDASFLPGSQMVF-FVLNVVEAIG 472 (486)
Q Consensus 444 ~~~~~~~~~~~~~g~~~~f-~~~~~~~~~~ 472 (486)
+......+.....+|++.| +..+++..+.
T Consensus 151 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 180 (366)
T TIGR00886 151 GSLIFGAGLPAHLAWGWAFVIVPAGILLLP 180 (366)
T ss_pred HHHHhcccccccccccchhHHHHHHHHHHH
Confidence 6532211100112678787 4334444333
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.7e-09 Score=101.71 Aligned_cols=150 Identities=13% Similarity=0.062 Sum_probs=105.5
Q ss_pred CccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhh
Q 011424 316 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNL 395 (486)
Q Consensus 316 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (486)
+++|.+..+.|++.+...++..++++. .+++.||+|||+...........+.. ..... . ....+.+.-++.+.
T Consensus 19 ~~~~~s~~~~g~~~s~~~~g~~i~~~~-~G~l~Dr~grr~~~~~~~~~~~~~~~-~~~~~----~-~~~~l~~~R~l~G~ 91 (368)
T TIGR00903 19 EDIDVSKEELGLLAITYPAAFLALTIP-SGLLLDRAFKRWFLFGSLATFAAAAG-RLLDP----F-NYEWLLACQLLAAL 91 (368)
T ss_pred HHhCcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHccchHHHHHHHHHHHHHHH-HHHHh----c-cHHHHHHHHHHHHh
Confidence 347999999999999999999999984 56777777988776544333322221 11110 1 12233333344444
Q ss_pred hhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHH
Q 011424 396 LSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLM 475 (486)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~ 475 (486)
.... .........|.+|+++|+++.++.+....+|..+++.+.+.+.+.. ||+..|++.+++.++..++
T Consensus 92 g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~----------gWr~~f~~~~~l~~~~~~~ 160 (368)
T TIGR00903 92 GQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAG----------GLQLLIIPIAAVAAAGIIL 160 (368)
T ss_pred HhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----------chHHHHHHHHHHHHHHHHH
Confidence 4433 3444455578899999999999999999999999999999988765 8999999988888777666
Q ss_pred hhccccccC
Q 011424 476 TFKPFLAQR 484 (486)
Q Consensus 476 ~~~~~~~~~ 484 (486)
.++ ..||+
T Consensus 161 ~~~-~lp~~ 168 (368)
T TIGR00903 161 VLA-ALPAL 168 (368)
T ss_pred HHH-HcCCC
Confidence 665 56654
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=99.14 E-value=9e-08 Score=88.45 Aligned_cols=330 Identities=14% Similarity=0.092 Sum_probs=171.8
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhh
Q 011424 84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEI 162 (486)
Q Consensus 84 ~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~ 162 (486)
.+.+.-+-.+...+.-+.+.+..+|+..+.=..+...++.++.++.++++|.+.=+++-.+.+++.|..-.. ..+ +..
T Consensus 61 t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~l-t~~ 139 (402)
T PF02487_consen 61 TGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSL-THF 139 (402)
T ss_pred chHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHH-HHh
Confidence 455666667778888888999999998766666777788899999999999998888889999988776665 444 445
Q ss_pred ccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccCCcccccccccccCCChhhHHHHHHHHHHHHHH-HHhcCCccc
Q 011424 163 FREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETLH 241 (486)
Q Consensus 163 ~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~ 241 (486)
+++ ...+.++.+.+.+.++|+..-..+.+ . ..+.|..+.....+.++..+. ++.+|+++.
T Consensus 140 y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~--------~-------g~s~~~tll~~~~lp~~~~~~~f~~L~~~~~ 200 (402)
T PF02487_consen 140 YGK----SSLSAWSSGTGGAGLVGALYYLGLTT--------L-------GLSPRTTLLIMLVLPAIFLLSYFFLLPSPPT 200 (402)
T ss_pred cCc----cccccccCCcChhhHHHHHHHHHHHH--------h-------CcCHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 554 35677788888888888876554443 1 333444445555444444333 344554332
Q ss_pred CCCCCCC-cccchhhhccccccchhhhcccCCCcccccc-cchhhHHHHHHHHHHHhhhhhh-hHHHHHhhcCccccCcc
Q 011424 242 RHNDDDD-SCDVSYDALESASAEVKEEEGREATPKKSLL-KNWPLMSSIIVYCVFSLHDMAY-SEIFSLWANSPKKLGGL 318 (486)
Q Consensus 242 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 318 (486)
+...++. ..+..++.....+.++.+.+.......++-+ +-+++...++-.++..+..+.. ....+...... . .
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~k~Ll~ymiPL~lVY~aEY~InqGv~~tl~fp~-~---~ 276 (402)
T PF02487_consen 201 NRPYQESESEDEAEDDLLESETSESKPDSSSKLSFKEKLKRLKPLLWYMIPLFLVYFAEYFINQGVAPTLLFPN-S---F 276 (402)
T ss_pred cCCCcccCCCCcccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhcCCc-c---C
Confidence 2211111 1111100000000000000111111222111 1122222333223333222222 22222222111 1 1
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhh
Q 011424 319 NYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSV 398 (486)
Q Consensus 319 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (486)
.-...+..+....+.++..+++- ...++ |.++.+.+.+...+..+.++.-.+....+ ..| .+++..+..|..++
T Consensus 277 ~~~r~~Y~~Y~~~YQ~GVFISRS-S~~~~--rir~lwils~LQ~~nl~~~~l~s~~~fip--si~-ivf~lif~eGLlGG 350 (402)
T PF02487_consen 277 FSPRDQYRWYQLLYQLGVFISRS-SLPFF--RIRRLWILSLLQVINLVFLLLQSWYRFIP--SIW-IVFVLIFYEGLLGG 350 (402)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhc-ceeee--ehhhHHHHHHHHHHHHHHHHHHHHHHHhh--HHH-HHHHHHHHHHHhhh
Confidence 11234455556666666666543 11111 12232222222222222222222221111 222 33445556667777
Q ss_pred hhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHH
Q 011424 399 SIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALF 443 (486)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~ 443 (486)
..+...+..+.+..|+++|..++|.....-.+|..++..+.-++-
T Consensus 351 a~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 351 ASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 777777777777799999999999998888888777766654443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.9e-09 Score=103.06 Aligned_cols=172 Identities=8% Similarity=-0.036 Sum_probs=125.6
Q ss_pred hhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHH
Q 011424 282 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI-LGPIMVARIA 360 (486)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 360 (486)
+.++......+.-.+..+......+.|+.+. +|++..+++.+.........+..+ .++++.|| +|||+.+..+
T Consensus 14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~-----lg~~~~~a~~i~~~~~~~~~~~~~-~~G~laDr~~G~r~~~~~g 87 (489)
T PRK10207 14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQ-----LGFSQEQAFITFGAFAALVYGLIS-IGGYVGDHLLGTKRTIVLG 87 (489)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHh-hHHHhhhhccchHHHHHHH
Confidence 4455555566666666666777777777654 788888888888777766666656 67777777 9999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccC--chhhHHhHHHHHHHHHHHHHhhh
Q 011424 361 GVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQD--QRGAANGIAMTGMSLFKAAGPAG 438 (486)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~g~~~~~~~~g~~~~~~~ 438 (486)
..+..++.....+..... ..+.+...+.+.+.+...+....++.|.+|++ +|+.+.++.+...++|..++|.+
T Consensus 88 ~~~~~~g~~~~~~~~~~~-----~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l 162 (489)
T PRK10207 88 AIVLAIGYFMTGMSLLKP-----DLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSL 162 (489)
T ss_pred HHHHHHHHHHHHHhccch-----hHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHH
Confidence 988888777666533211 11222333445566667777888999999877 45889999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHH
Q 011424 439 GGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVL 474 (486)
Q Consensus 439 ~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~ 474 (486)
.|++.++. ||++.|++.++..+++.+
T Consensus 163 ~g~l~~~~----------gw~~~F~i~~i~~~~~~~ 188 (489)
T PRK10207 163 APVIADKF----------GYSVTYNLCGAGLIIALL 188 (489)
T ss_pred HHHHHHhh----------ChHHHHHHHHHHHHHHHH
Confidence 99999887 899999886654444433
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.9e-09 Score=101.32 Aligned_cols=146 Identities=19% Similarity=0.079 Sum_probs=108.7
Q ss_pred CccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhh
Q 011424 316 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNL 395 (486)
Q Consensus 316 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (486)
+++|.++.+.++..+...++..++++ ..+.+.||++||+.+..+..+..++.....+... .+ .+.+..++.+.
T Consensus 34 ~~~~~s~~~~g~~~s~~~~~~~~~~~-~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~-----~~-~l~~~~~l~G~ 106 (401)
T PRK11043 34 ADLQTSASAVSASLSLFLAGFALGQL-LWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVES-----AA-QLLVLRFVQAV 106 (401)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHH-hhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcC-----HH-HHHHHHHHHHh
Confidence 34789999999999999999999988 5666667789999988877766665555544321 11 22233333344
Q ss_pred hhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHH
Q 011424 396 LSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLM 475 (486)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~ 475 (486)
+.....+.......|.+|++++++..+..+....++..++|.+.+.+.+.. ||+..|++.+++.++..+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~----------g~~~~~~~~~~~~~~~~~~ 176 (401)
T PRK11043 107 GVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHF----------GWQAIFATLFAITLLLILP 176 (401)
T ss_pred hhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----------ChHHHHHHHHHHHHHHHHH
Confidence 444445556677788899999999999999889999999999999998876 8999998888777776665
Q ss_pred hhc
Q 011424 476 TFK 478 (486)
Q Consensus 476 ~~~ 478 (486)
.+.
T Consensus 177 ~~~ 179 (401)
T PRK11043 177 TLR 179 (401)
T ss_pred HHH
Confidence 544
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.2e-09 Score=102.13 Aligned_cols=149 Identities=15% Similarity=0.168 Sum_probs=115.6
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhh
Q 011424 317 GLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLL 396 (486)
Q Consensus 317 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (486)
++|.++.+.++..+...++..++++ ..+.+.||.|||+.+..+..+..++.....+.... ....+..++.+.+
T Consensus 20 ~~~~s~~~~~~~~~~~~~~~~~~~~-~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~------~~~~~~~~l~g~~ 92 (377)
T PRK11102 20 DFGVSAGSVQMTLSAYILGFAIGQL-FYGPMADSFGRKPVILGGTLVFALAAVACALAQTI------DQLIYMRFLHGLA 92 (377)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHH-hhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccH------HHHHHHHHHHHHH
Confidence 3689999999999999999999988 55666677799999888887777776666543221 1233444455556
Q ss_pred hhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHh
Q 011424 397 SVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMT 476 (486)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~ 476 (486)
.....+....+..+.+|+++|+++.++.+....+|..++|.+.+.+.+.. +|+..|++.+.+.++..+..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~----------~~~~~~~~~~~~~~~~~~~~ 162 (377)
T PRK11102 93 AAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWF----------SWHAIFWVLALAAILAAALV 162 (377)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------ChHHHHHHHHHHHHHHHHHH
Confidence 66666777888899999999999999999999999999999999998876 79999988888777766555
Q ss_pred hcccccc
Q 011424 477 FKPFLAQ 483 (486)
Q Consensus 477 ~~~~~~~ 483 (486)
.. ..||
T Consensus 163 ~~-~~~~ 168 (377)
T PRK11102 163 FF-FIPE 168 (377)
T ss_pred HH-hCCc
Confidence 44 3444
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.4e-09 Score=98.22 Aligned_cols=145 Identities=16% Similarity=0.107 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHhhhhhhhhcccHHHHHHH---hcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHH
Q 011424 42 ELFSIWIIVLCTALPISSLFPFLYFMIKD---FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG 118 (486)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~ 118 (486)
.+....+..++............+.+.+| +|.++.+ .++..+.+..+..++.+..+++.||+|+||++.++
T Consensus 141 ~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~------a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~ 214 (310)
T TIGR01272 141 HLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQ------AAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFN 214 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 34444444444443455556666666653 5888888 99999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcc
Q 011424 119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (486)
Q Consensus 119 ~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~ 195 (486)
..+..++.++....++...+ ..-++.|++.+...|. .+...+..|++ .+++.++. ....+|..+.|++.|.+.+
T Consensus 215 ~~l~~~~~~l~~~~~~~~~~-~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad 289 (310)
T TIGR01272 215 AFLAVLLSIGAALTHGYVAM-WFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLAD 289 (310)
T ss_pred HHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHH
Confidence 88888877666665544333 3555788888888886 88888877754 45566665 5667999999999999998
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.5e-09 Score=92.73 Aligned_cols=132 Identities=14% Similarity=0.197 Sum_probs=109.0
Q ss_pred hhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHhcc---
Q 011424 56 PISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS--- 132 (486)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a--- 132 (486)
..+.++..-|.+.+.+|.|.+| ...+.++..+|..+ +++.|.+.|++|+|.++.+|.+...++..+...+
T Consensus 17 t~Y~Fs~yS~~Lk~~l~~sq~~------l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~ 89 (250)
T PF06813_consen 17 TTYTFSAYSPQLKSRLGYSQSQ------LNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSG 89 (250)
T ss_pred cccchhhhhHHHHHHhCCCHHH------HHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4456667778999999999999 99999999999876 5889999999999999999999999998777652
Q ss_pred ----chHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcc
Q 011424 133 ----VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (486)
Q Consensus 133 ----~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~ 195 (486)
+++|.+.+..++.|.+.+...++ ...-.+.+| ++||++.|+.-...+++..+-..+...+.+
T Consensus 90 ~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~ 156 (250)
T PF06813_consen 90 RIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFG 156 (250)
T ss_pred ccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcC
Confidence 47888888888888876666554 555557787 579999999999999998887777666655
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.4e-10 Score=107.87 Aligned_cols=132 Identities=15% Similarity=0.128 Sum_probs=104.4
Q ss_pred HHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHH-HHHHHhhhhhhhhhhhcCCchhhhHHHHH
Q 011424 43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFM-FGRALTSVFWGLVADRYGRKPVIIMGTAS 121 (486)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~-~~~~i~~~~~G~l~dr~Grr~~l~~~~~~ 121 (486)
++.+.+..++............|.+.+++|.+.++ .+.+.++.. ++..++.+++|++.||+|||+.+..+.++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~------~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~ 284 (356)
T TIGR00901 211 ALLLLLLIVLYKLGDSAATVLTTLFLLDMGFSKEE------IALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIV 284 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 44444444444555556667777777779998888 888887665 57789999999999999999999988888
Q ss_pred HHHHHHHHhcc-----------chHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhh
Q 011424 122 VVIFNTLFGLS-----------VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWG 180 (486)
Q Consensus 122 ~~~~~~~~~~a-----------~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~ 180 (486)
.+++..+..+. ++.+.+..+.++.+++.+...+. .+++.|.+|+++|++.+++.+...+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 285 QALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 87776655442 45677888889999998888886 9999999999999999999887654
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.6e-09 Score=104.00 Aligned_cols=148 Identities=14% Similarity=0.165 Sum_probs=99.9
Q ss_pred HHHHHHhcccccchhhhhHhHHHHHHHH-HHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHH---hcc-chHHHHH
Q 011424 65 YFMIKDFQIAKREEDIGSYAGYVGSSFM-FGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLF---GLS-VNFWMAV 139 (486)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~g~~~s~~~-~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~---~~a-~~~~~l~ 139 (486)
+.+.+++|.++++ .+++.+... ++..++.+++|++.||+|||+.+.++..+..+..+.. ++. ++.+.++
T Consensus 234 ~~l~~~~G~~~~~------~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 307 (402)
T PRK11902 234 TFLIRGAGFSAGE------VGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMA 307 (402)
T ss_pred HHHHHhcCCCHHH------HHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 4567778999888 899886654 5688999999999999999998887777666554333 343 4566666
Q ss_pred HHHHH----HHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccCCcccccccccccCC
Q 011424 140 LTRFL----LGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFP 214 (486)
Q Consensus 140 ~~r~l----~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~~~~gw~~~~~~~~ 214 (486)
+.-++ .|++.+...+. ..++.+.+|.+++ +..+...++|..+++.++|.+.+ .+|
T Consensus 308 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~~-------~~G--------- 367 (402)
T PRK11902 308 LAIGIENLCGGMGTAAFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLVE-------AYG--------- 367 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHH-------HhC---------
Confidence 55544 44444444554 6677777776554 45555567788777778999998 444
Q ss_pred ChhhHHHHHHHHHHHHHHHHhcCC
Q 011424 215 YFLPCLCISLFAFGVTIAAFWLPE 238 (486)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~e 238 (486)
|+..+...++++++.++.....+.
T Consensus 368 ~~~~f~~~~~~~~~~~~~~~~~~~ 391 (402)
T PRK11902 368 WPGFYLMTVVIALPGLALLWLMRG 391 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444446666666665555544443
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.5e-09 Score=98.57 Aligned_cols=148 Identities=18% Similarity=0.213 Sum_probs=113.7
Q ss_pred hHHHHHHHHHHHhhhhhhhhcccHH-HHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHH
Q 011424 41 TELFSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT 119 (486)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~ 119 (486)
++.+.+++.++...-+.-.++..+| .+.++|+.++.+ .|.....+.+...+..+.+|+++||+|.+|++.+..
T Consensus 218 ~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~------Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f 291 (417)
T COG2223 218 KDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVT------AGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVF 291 (417)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhh------HHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHH
Confidence 3455555555555555555566666 567789999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcc-------chHHHHHHHHHHHHhhccchhh-HHHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhh
Q 011424 120 ASVVIFNTLFGLS-------VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGG 191 (486)
Q Consensus 120 ~~~~~~~~~~~~a-------~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~ 191 (486)
..++++..+.... ++....++.-+..++..|.-.- +..++..++|+ +-|.+.|+.....++|...-|..-+
T Consensus 292 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g 370 (417)
T COG2223 292 VGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFG 370 (417)
T ss_pred HHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhccccccchhHHHH
Confidence 9988888877765 3455555545555555444443 36777777765 6888999999999999988888888
Q ss_pred hhcc
Q 011424 192 FLAQ 195 (486)
Q Consensus 192 ~l~~ 195 (486)
...+
T Consensus 371 ~~~~ 374 (417)
T COG2223 371 VSLD 374 (417)
T ss_pred HHHH
Confidence 8877
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.5e-09 Score=87.20 Aligned_cols=135 Identities=17% Similarity=0.234 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhh
Q 011424 331 ITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNR 410 (486)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (486)
...++.+++++ ..+++.||.+||+....+.....++......... .+ ...+..++.+.......+....+..|
T Consensus 6 ~~~~~~~~~~~-~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~g~~~~~~~~~~~~~~~~ 78 (141)
T TIGR00880 6 GYALGQLIYSP-LSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSN-----IT-VLIIARFLQGFGAAFALVAGAALIAD 78 (141)
T ss_pred eehhHHHHHHh-hHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcc-----HH-HHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34556667777 5556667779999888777666666555443221 11 23333445555556667788888999
Q ss_pred ccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhcccccc
Q 011424 411 AVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQ 483 (486)
Q Consensus 411 ~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~ 483 (486)
..|+++|+++.++.+....++..++|.+.+.+.+.. +++..+.+.+.+.++..+..++ ..||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~-~~~~ 140 (141)
T TIGR00880 79 IYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFL----------GWRAPFLFLAILALAAFILLAF-LLPE 140 (141)
T ss_pred HCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhccc----------chHHHHHHHHHHHHHHHHHHhh-cCCC
Confidence 999999999999999999999999999999998765 7888888888887777776666 4554
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.6e-08 Score=96.80 Aligned_cols=190 Identities=7% Similarity=-0.082 Sum_probs=127.2
Q ss_pred hHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 011424 284 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVL 363 (486)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (486)
+......+++..+.........|.+ .+++|.+..+.|++.+...++..++++ ..+++.||+|+|+.+..+..+
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~------~~~~~~s~~~~g~l~s~~~~g~~i~~~-~~g~l~~r~G~r~~~~~g~~l 77 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQF------QQAFTLTAFQAALVQSAFYGGYFIMAI-PAAIFMKKLSYKAGILLGLFL 77 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH------HHHhCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCchHHHHHHHHH
Confidence 3444444555444443333444433 234799999999999999999999998 566777788999999999888
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHH
Q 011424 364 TIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALF 443 (486)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~ 443 (486)
..++..++...... ..+..+.+..++.+.+.....+....+..+..|++++++..++.+....+|..++|.+.+.+.
T Consensus 78 ~~~g~~l~~~~~~~---~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~ 154 (410)
T TIGR00885 78 YALGAFLFWPAAEI---MNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI 154 (410)
T ss_pred HHHHHHHHHHHHhh---ccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87776665333211 122233444455566666666777778888889999999999999999999999999999886
Q ss_pred HHHhhhcC----------------CCCCCchhHHHHHHHHHHHHHHHHhhcccccc
Q 011424 444 SWAQKRLD----------------ASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQ 483 (486)
Q Consensus 444 ~~~~~~~~----------------~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~ 483 (486)
........ .....+|+.+|++.+++.++..++..+...|+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~ 210 (410)
T TIGR00885 155 LSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPA 210 (410)
T ss_pred hcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 43210000 00011588899888877776655443313444
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.1e-07 Score=89.32 Aligned_cols=332 Identities=15% Similarity=0.048 Sum_probs=194.2
Q ss_pred HHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccch
Q 011424 88 GSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREE 166 (486)
Q Consensus 88 ~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~ 166 (486)
.++......+.+++.+.+.|+.|.|+.+.++........+..-+ +|-+.++++-.+.|+|.+..+.. ..+++|..++|
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 67777888999999999999999999999999999888777666 45667888999999999999997 89999999999
Q ss_pred hhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccC-Ccccccc-cccccCC---ChhhHHHHHHHHHHH--HHHHHhcCCc
Q 011424 167 HQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY-PNLFSSE-SLFGKFP---YFLPCLCISLFAFGV--TIAAFWLPET 239 (486)
Q Consensus 167 ~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~-~~~~gw~-~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~~e~ 239 (486)
++.+..++.-+....+.++|..+-..+....... ....+-+ ..+ +.. ...-.+......+.. ++...+.|.+
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~ 213 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVF-EVLFIDFEIKVLFGVLLAISVLSIINFDFLPSK 213 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhc-chhhhhHHHHHHHHHHHHHHHHHhhheeecCcc
Confidence 9999999988888888888877665554422111 0001110 000 000 001011111111111 1111122211
Q ss_pred ccCCCCCCCcccchhhhccccccchhhhcccCCCcccccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccc
Q 011424 240 LHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLN 319 (486)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 319 (486)
... ..++.. + +...+..+...+++++++.......++..++....+...+|..+... ...+
T Consensus 214 ~~~-~~~~~~-~--------------~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft---~~~~ 274 (461)
T KOG3098|consen 214 DVV-NCKSSS-E--------------TSFSELLKLTFKLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFT---RKLG 274 (461)
T ss_pred chh-hhhhhc-c--------------ccHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhh---hhcc
Confidence 110 000000 0 00111112334566777776666666555444444444444333222 1122
Q ss_pred cc-cchhHHHHHHHHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHHHHHHHHhhhhh------------hHH
Q 011424 320 YS-TQMVGEVLAITGFSLLVFQLSLYPFLERI---LGPIMVARIAGVLTIPLLTSYPYIAMLSGF------------GLA 383 (486)
Q Consensus 320 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~ 383 (486)
.+ ....++.....+++.++++. ....+.|| +|+++.+.++..+......+.........+ ...
T Consensus 275 ~n~~~~~ai~~~~~g~g~v~~g~-~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~ 353 (461)
T KOG3098|consen 275 SNTTYLIAIYSIGIGLGEVIGGL-DFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSY 353 (461)
T ss_pred CcchhHHHHHHHHHhHHHHHHHH-HHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccch
Confidence 22 23345555566677777666 34444443 466777777766665555554332221110 113
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHH
Q 011424 384 FLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGAL 442 (486)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l 442 (486)
....++.++.+..-.......+.++.... +++|..+.++...-..++..++-......
T Consensus 354 ~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~~ 411 (461)
T KOG3098|consen 354 YLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPYL 411 (461)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 34555666667777777778888888877 58899999888887777776665544433
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.5e-09 Score=101.08 Aligned_cols=149 Identities=18% Similarity=0.211 Sum_probs=126.7
Q ss_pred hHHHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHH
Q 011424 41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA 120 (486)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~ 120 (486)
+.+..+....++..+.........+++.++.--+++. .+.+..+..++..++.+++++++||+|+|+++..+.+
T Consensus 225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~------~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~ 298 (428)
T PF13347_consen 225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEGL------ISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLL 298 (428)
T ss_pred chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCchh------hHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHH
Confidence 4455666677777778888887888777775444455 7888889999999999999999999999999999999
Q ss_pred HHHHHHHHHhccc--hHHHHHHHHHHHHhhccchhhH-HHHHhhhccc-------hhhhhHhhHHHHHhhhhHHHHhhhh
Q 011424 121 SVVIFNTLFGLSV--NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFRE-------EHQALGLSTVSTAWGIGLIIGPALG 190 (486)
Q Consensus 121 ~~~~~~~~~~~a~--~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~ig~~l~ 190 (486)
+.+++.++..+.+ |.+.+++.-++.|++.+...+. .++++|..+. ++.|..++..+...-+|..+++.+.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~ 378 (428)
T PF13347_consen 299 LAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIV 378 (428)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHH
Confidence 9999999888876 9999999999999998888776 8999988873 3358889999999999999999999
Q ss_pred hhhcc
Q 011424 191 GFLAQ 195 (486)
Q Consensus 191 ~~l~~ 195 (486)
+.+.+
T Consensus 379 g~~l~ 383 (428)
T PF13347_consen 379 GLLLA 383 (428)
T ss_pred HHHHH
Confidence 98876
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.7e-08 Score=96.16 Aligned_cols=190 Identities=11% Similarity=-0.012 Sum_probs=120.3
Q ss_pred chhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 011424 281 NWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIA 360 (486)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (486)
+|.++...+...+.+.....+....+.... .+++++..+.+++.++..+...+.++.. +.+.||+|.|+...++
T Consensus 33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~-----~~~~ls~~q~g~l~ai~~l~~al~rip~-G~l~Dr~G~R~v~~~~ 106 (462)
T PRK15034 33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNK-----IGFNFTTDQLFLLTALPSVSGALLRVPY-SFMVPIFGGRRWTVFS 106 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hhcCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCChHHHHHH
Confidence 355666665555555555544443332211 2489999999999999999999998855 6666778999888888
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHH
Q 011424 361 GVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGG 440 (486)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g 440 (486)
..+..+......+....... ....+++..++.+.. ....+.....+++.+|+++||++.|+....+++|..+++.+..
T Consensus 107 ~ll~~i~~~~~~~a~~~~~~-s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p 184 (462)
T PRK15034 107 TAILIIPCVWLGIAVQNPNT-PFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAP 184 (462)
T ss_pred HHHHHHHHHHHHHHHcccCC-CHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 87777666665553111111 222334444444444 4466777778888899999999999997777777777666665
Q ss_pred HHH-----HHHhhhcCCC---CCCchhHHHHHHHHHHHHHHHHhhc
Q 011424 441 ALF-----SWAQKRLDAS---FLPGSQMVFFVLNVVEAIGVLMTFK 478 (486)
Q Consensus 441 ~l~-----~~~~~~~~~~---~~~g~~~~f~~~~~~~~~~~~~~~~ 478 (486)
.+. +..+...... ...+++.+.++.+.+.++..++.++
T Consensus 185 ~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~ 230 (462)
T PRK15034 185 LVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWS 230 (462)
T ss_pred HHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544 2221110000 0114677777777777777666665
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.7e-10 Score=97.92 Aligned_cols=126 Identities=21% Similarity=0.289 Sum_probs=95.7
Q ss_pred HHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHhccchHH----HHHHHHHHHHhhccchhhHHHHHhhhccchh
Q 011424 92 MFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFW----MAVLTRFLLGSLNGLLGPIKAYACEIFREEH 167 (486)
Q Consensus 92 ~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~----~l~~~r~l~G~~~g~~~~~~~~i~~~~~~~~ 167 (486)
.+.-.-|.++.+++.||+|||+++..+.++++++.++...+.+-. ++..+|++. .|.+..++.|..|.+|..-
T Consensus 391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafi---sg~fqvaYvYtPEVyPTav 467 (528)
T KOG0253|consen 391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFI---SGAFQVAYVYTPEVYPTAV 467 (528)
T ss_pred HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHH---hchheEEEEecCcccchhh
Confidence 355678899999999999999999999999999998777654322 334445433 3445556899999999999
Q ss_pred hhhHhhHHHHHhhhhHHHHhhhhhhhcccCccCCcccccccccccCCChhhHHHHHHHHHHHHHHHHhcCC
Q 011424 168 QALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPE 238 (486)
Q Consensus 168 r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 238 (486)
|+...|.-+.+.-+|.++.|+++ ...+ .+-.++..+.+..++++.+...++|-
T Consensus 468 RatgvGtcSsmaRIggI~~p~iA-~~~e-----------------~s~sl~i~vy~~~~ilagIavcffPi 520 (528)
T KOG0253|consen 468 RATGVGTCSSMARIGGIFSPVIA-MRAE-----------------LSTSLPIFVYGALFILAGIAVCFFPI 520 (528)
T ss_pred hhcchhhhhhHHhhhhhhhhHHH-HHhc-----------------cceeehHHHHHHHHHHHHHHheeeee
Confidence 99999999999999999999999 3332 22234455666667777777777774
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.2e-09 Score=95.85 Aligned_cols=141 Identities=25% Similarity=0.278 Sum_probs=115.5
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhh
Q 011424 84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEI 162 (486)
Q Consensus 84 ~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~ 162 (486)
.|.+.++..+.-++...+..++.+|+|.|+.++++..+.++=-.++++++|.+.+.+.+.+.|+-.+....+ ..|+++.
T Consensus 261 ~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~ 340 (412)
T PF01306_consen 261 YGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAH 340 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999999999999999999999999999999999999999999999999988887775 9999999
Q ss_pred ccchhhhhHhhHH-HHHhhhhHHHHhhhhhhhcccCccCCcccccccccccCCChhhHHHHHHHHHHH-HHHHHhcCCcc
Q 011424 163 FREEHQALGLSTV-STAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETL 240 (486)
Q Consensus 163 ~~~~~r~~~~~~~-~~~~~~g~~ig~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~ 240 (486)
+|+|..++...+. +.+.++|..+.+.++|.+.| +.|++..+.+.+.+.+.. ++..+.+++++
T Consensus 341 fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd----------------~~G~~~tylimg~iv~~~~li~~f~l~~~~ 404 (412)
T PF01306_consen 341 FDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYD----------------RIGFQHTYLIMGLIVLPFTLISAFTLKKDK 404 (412)
T ss_dssp S-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHS--SS
T ss_pred CCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHh----------------hcCcHHHHHHHHHHHHHHHHHheeeecCCC
Confidence 9999888888874 78889999999999999999 555555556666555544 44455555443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=6e-09 Score=97.11 Aligned_cols=143 Identities=15% Similarity=0.185 Sum_probs=106.3
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhh
Q 011424 318 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLS 397 (486)
Q Consensus 318 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (486)
.+-.+...|........+.++.-+ ...++.+++|+.+++..++.....=++.+....+.+ .++.+-++.+...
T Consensus 401 ~~~~~~LfGv~~a~~~~gEI~~~f-fs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W------~vLPieilqgit~ 473 (618)
T KOG3762|consen 401 LGGIKTLFGVVSALCHAGEILFYF-FSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPW------MVLPIEILQGITH 473 (618)
T ss_pred cCCcceeeeehhhhhccchHHHHH-HHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCch------heeeHHHHHHHHH
Confidence 565666677666666677777765 556667778999888888777666666655543322 3444556666677
Q ss_pred hhhhhhhhhhhhhccccCchhhHHhHHHHH-HHHHHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHh
Q 011424 398 VSIITGLFILQNRAVDQDQRGAANGIAMTG-MSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMT 476 (486)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~-~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~ 476 (486)
...+....++++...||+.+.+++++.... ..+|-.+|.+++|.+.+.. |-...|..+++.+++.+++.
T Consensus 474 aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f----------g~~ttf~~~giAcl~~l~~~ 543 (618)
T KOG3762|consen 474 ALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERF----------GARTTFRIFGIACLVTLALF 543 (618)
T ss_pred HHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheee----------hhHHHHHHHHHHHHHHHHHH
Confidence 788888889999999999999999999865 5789999999999999887 67778888777777665554
Q ss_pred h
Q 011424 477 F 477 (486)
Q Consensus 477 ~ 477 (486)
.
T Consensus 544 ~ 544 (618)
T KOG3762|consen 544 I 544 (618)
T ss_pred H
Confidence 3
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.8e-09 Score=100.94 Aligned_cols=148 Identities=18% Similarity=0.181 Sum_probs=115.4
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhh
Q 011424 317 GLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLL 396 (486)
Q Consensus 317 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (486)
+++++..+.|.+.+...++..++++ ..+++.||+|+|+.+..+..+..+...+..+... .....+++.-++.+.+
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~-~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~----~~~~~l~~~r~~~G~~ 144 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQI-PVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAG----GGIALVVFCRVIQGLA 144 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHc-chHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHH----cCchHHHHHHHHHHHh
Confidence 5789999999999999999999998 5666777789999888887766666555433211 1122344555666777
Q ss_pred hhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHh
Q 011424 397 SVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMT 476 (486)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~ 476 (486)
.....+....+..+.+|+++|+++.|+.+....+|.+++|.+.+.+.+.. .||+..|++.+++.++..++.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~---------~gw~~~f~i~~~~~~~~~~~~ 215 (465)
T TIGR00894 145 QGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESW---------GGWPMIFYVFGIVGCAWSLLW 215 (465)
T ss_pred cccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------CCCCeehhhhhHHHHHHHHHH
Confidence 78888888999999999999999999999999999999999999988752 178889998888776665554
Q ss_pred hc
Q 011424 477 FK 478 (486)
Q Consensus 477 ~~ 478 (486)
+.
T Consensus 216 ~~ 217 (465)
T TIGR00894 216 FV 217 (465)
T ss_pred HH
Confidence 44
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.2e-09 Score=106.44 Aligned_cols=147 Identities=16% Similarity=0.145 Sum_probs=109.3
Q ss_pred HHHHHHHHHHhhhhhhhhcccHHHHHH-HhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHH
Q 011424 43 LFSIWIIVLCTALPISSLFPFLYFMIK-DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS 121 (486)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~ 121 (486)
+....+..++............|.+.+ .+|.+... .++......++..++.++++++.||+|+|+++.++.++
T Consensus 230 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~ 303 (448)
T PRK09848 230 LFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLF------TVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALL 303 (448)
T ss_pred HHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 444444444444444444445554444 35655433 44444555677888999999999999999999999988
Q ss_pred HHHHHHHHhccc--hHHHHHHHHHHHHhhccchhhH-HHHHhhhccch-------hhhhHhhHHHHHhhhhHHHHhhhhh
Q 011424 122 VVIFNTLFGLSV--NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREE-------HQALGLSTVSTAWGIGLIIGPALGG 191 (486)
Q Consensus 122 ~~~~~~~~~~a~--~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~-------~r~~~~~~~~~~~~~g~~ig~~l~~ 191 (486)
..++.++..+.+ +++.+++..++.|+|.+...+. .++.+|..|.+ ++|...+..+....+|..+|+.+.+
T Consensus 304 ~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g 383 (448)
T PRK09848 304 GTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPA 383 (448)
T ss_pred HHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 888877776643 6777777888899998887775 88888888754 3588999999999999999999999
Q ss_pred hhcc
Q 011424 192 FLAQ 195 (486)
Q Consensus 192 ~l~~ 195 (486)
.+.+
T Consensus 384 ~~l~ 387 (448)
T PRK09848 384 FILG 387 (448)
T ss_pred HHHH
Confidence 8876
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.6e-08 Score=86.44 Aligned_cols=146 Identities=18% Similarity=0.240 Sum_probs=109.2
Q ss_pred HHHHHHHHHHhhhhhhhhcccHH-HHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHH
Q 011424 43 LFSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS 121 (486)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~ 121 (486)
++.+...+++.+....-...+-| .+++.||.|..+ .+.+.+......++.+++.|.++||+|++...+.+..+
T Consensus 266 fw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~------a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~ 339 (459)
T KOG4686|consen 266 FWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVS------AGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACI 339 (459)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhh------ccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHH
Confidence 44444444444444333333334 567899999998 89899888888899999999999999999887776544
Q ss_pred HHH-HHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhccc
Q 011424 122 VVI-FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP 196 (486)
Q Consensus 122 ~~~-~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~ 196 (486)
..+ +-....+ +++.=+.+..+.|+........ ...++...|+++.|++.|..+...++|..+.|++++.+.+.
T Consensus 340 ~tl~~H~~l~F--t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~ 414 (459)
T KOG4686|consen 340 LTLLGHSGLFF--TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADG 414 (459)
T ss_pred HHHHHhhhHHh--hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecC
Confidence 433 3333333 2333356667888887776665 77888889999999999999999999999999999999984
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.2e-08 Score=90.82 Aligned_cols=146 Identities=12% Similarity=0.025 Sum_probs=113.8
Q ss_pred ccccccch-hHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhh
Q 011424 317 GLNYSTQM-VGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNL 395 (486)
Q Consensus 317 ~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (486)
++|++..+ .|.+......+..+..+ .++++.||+|.|+++..+.+...+...+.++... ...+.+.-++.|.
T Consensus 55 elglT~~qv~G~I~s~F~ysYal~qI-p~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~S------l~~L~i~R~llGv 127 (511)
T TIGR00806 55 VLNFTEETVTNEIIPVLPYSHLAVLV-PVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTS------VWHMQLMEVFYSV 127 (511)
T ss_pred HcCCCHHHhcchHHHHHHHHHHHHHH-HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Confidence 48999999 99999999999999988 7788888889999999988888888777776543 2245555666677
Q ss_pred hhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHH
Q 011424 396 LSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLM 475 (486)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~ 475 (486)
+.+... ....++.+.+|+++|+++.|+.+....+|.++++.+.+.+. ..+.. .+....++..+...++.++
T Consensus 128 aEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~-s~gWr-------~y~~Ln~Isl~s~~~a~~~ 198 (511)
T TIGR00806 128 TMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV-TLGWI-------SYSTLNIISLVFMTFSVFL 198 (511)
T ss_pred HHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCch-------hHHHHHHHHHHHHHHHHHH
Confidence 777777 88888889999999999999999999999999999999943 33111 3445555555555666666
Q ss_pred hhc
Q 011424 476 TFK 478 (486)
Q Consensus 476 ~~~ 478 (486)
.++
T Consensus 199 a~~ 201 (511)
T TIGR00806 199 ALF 201 (511)
T ss_pred HHh
Confidence 555
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.99 E-value=8.8e-09 Score=112.68 Aligned_cols=132 Identities=14% Similarity=0.114 Sum_probs=114.1
Q ss_pred hhhcccHH-HHHHHhccccc-chhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHhccchH
Q 011424 58 SSLFPFLY-FMIKDFQIAKR-EEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF 135 (486)
Q Consensus 58 ~~~~~~~~-~~~~~~~~~~~-~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~ 135 (486)
......+| .+.+++|.+.. + .+++.+...++.++++++.|+++||+++|+++.++.++.+++.++..+..+.
T Consensus 249 ~~~~~~~~~~~~~~~g~s~~~~------~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (1146)
T PRK08633 249 QLAQANFPAYAKEVLGLDNTFQ------VQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSL 322 (1146)
T ss_pred HHHHHhhHHHHHHHhCCCcHHH------HHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhH
Confidence 33444455 44567899887 7 8999999999999999999999999999999999998888888888888899
Q ss_pred HHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcc
Q 011424 136 WMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (486)
Q Consensus 136 ~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~ 195 (486)
+.++++.++.|++.+...+. .+++.+..|+++|++++++.+....+|.++++.+++.+..
T Consensus 323 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~ 383 (1146)
T PRK08633 323 ASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG 383 (1146)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998887665 8999999999999999999999999999888888876653
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.6e-09 Score=104.53 Aligned_cols=149 Identities=11% Similarity=0.047 Sum_probs=109.1
Q ss_pred hHHHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHH
Q 011424 41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA 120 (486)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~ 120 (486)
+.+..+....++............+++.++...+.+. .+++.+...++..++.+++++++||+|+|+.+.++.+
T Consensus 231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~------~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~ 304 (473)
T PRK10429 231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIGDADL------FPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASI 304 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 3344444445555555555555555555554334444 6777777778889999999999999999999998887
Q ss_pred HHHHHHHHHhc-----cchHHHHHHHHHHHHhhccchhhH-HHHHhhhcc-------chhhhhHhhHHHHHhhhhHHHHh
Q 011424 121 SVVIFNTLFGL-----SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFR-------EEHQALGLSTVSTAWGIGLIIGP 187 (486)
Q Consensus 121 ~~~~~~~~~~~-----a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~-------~~~r~~~~~~~~~~~~~g~~ig~ 187 (486)
+..++.+...+ .++.+.+++.-++.|++.+...+. .++++|..+ +++.|..++......-+|..+++
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~ 384 (473)
T PRK10429 305 FPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAA 384 (473)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHH
Confidence 76666554432 356677777778889988877775 889999866 33345688999999999999999
Q ss_pred hhhhhhcc
Q 011424 188 ALGGFLAQ 195 (486)
Q Consensus 188 ~l~~~l~~ 195 (486)
.+.|++.+
T Consensus 385 ~i~g~~l~ 392 (473)
T PRK10429 385 FFIGVVLG 392 (473)
T ss_pred HHHHHHHH
Confidence 99999887
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.2e-06 Score=80.76 Aligned_cols=294 Identities=8% Similarity=0.094 Sum_probs=158.6
Q ss_pred hHHHHHHHHHHHhhhhhhhhcccHHHHHHHhccc-----ccchhhhhHhHHHHHHHHHHHHHh-hhhhhhhhhhcCCchh
Q 011424 41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIA-----KREEDIGSYAGYVGSSFMFGRALT-SVFWGLVADRYGRKPV 114 (486)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~g~~~s~~~~~~~i~-~~~~G~l~dr~Grr~~ 114 (486)
++++...+..|+..+..+..- .+.+.+..+ .+. ..++-+...+..++. .++.+++++|++|+++
T Consensus 7 ~k~~~~~l~fF~il~~Y~iLR----~lKD~lvv~~~~~gae~------i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~l 76 (472)
T TIGR00769 7 KKFLPLFLMFFCILFNYTILR----DTKDTLVVTAKGSGAEI------IPFLKTWVVVPMAVIFMLIYTKLSNILSKEAL 76 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----hhhhheeecccCCchhh------HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHh
Confidence 445555665666555555443 444555443 234 788888887777666 8999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcc--c-----------------------------hHHHHHHHHHHHHhhccchhh-H-HHHHhh
Q 011424 115 IIMGTASVVIFNTLFGLS--V-----------------------------NFWMAVLTRFLLGSLNGLLGP-I-KAYACE 161 (486)
Q Consensus 115 l~~~~~~~~~~~~~~~~a--~-----------------------------~~~~l~~~r~l~G~~~g~~~~-~-~~~i~~ 161 (486)
+-+....+.....++++. | +.|...+..+...+-...... . ..+.+|
T Consensus 77 f~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fand 156 (472)
T TIGR00769 77 FYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQ 156 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 988777776666665543 1 123333333444444444433 4 789999
Q ss_pred hccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccCCcccccccccccCCC--h--hhHHHHHHHHHHHHHHHHhcC
Q 011424 162 IFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPY--F--LPCLCISLFAFGVTIAAFWLP 237 (486)
Q Consensus 162 ~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~~~~gw~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~ 237 (486)
.+..+|-.|..+++..+.++|.++++.+..++.+.....+.. ...| . ..+.+..+..++.+.+..++.
T Consensus 157 i~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~ 228 (472)
T TIGR00769 157 ITTIDEAKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPG--------VDGWHVSLKNLMVIVICSGLAIILLYWWVN 228 (472)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc--------cChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998887421111000 1122 1 122333333333334444443
Q ss_pred CcccCCCCCCCcccchhhhccccccchhhhcccCCCcccccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCc
Q 011424 238 ETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGG 317 (486)
Q Consensus 238 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (486)
+.....+...+.++ .+++++.+.....+.+.++++|.++...+...+++..........-....+.. .+
T Consensus 229 ~~~~~~~~~~~~~~---------~~~k~k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~--p~ 297 (472)
T TIGR00769 229 RNVLTDPRSYNPAL---------KEKKVKPKMSTMESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQY--PS 297 (472)
T ss_pred hcccCCccccchhh---------ccccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CC
Confidence 22211110000000 00000001112345667889998877666666654443333222211111110 00
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 011424 318 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLT 364 (486)
Q Consensus 318 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (486)
..--..-.|.+....++..++.+++. +.+-||.|-+....+.-.+.
T Consensus 298 ~~~~~~f~g~~~~~~gi~tl~~~l~~-~~l~~~~Gw~~~a~i~Pii~ 343 (472)
T TIGR00769 298 PNEYSAFMGDFSTWTGVVSVTMMLLS-GNVIRKYGWLTAALITPLVM 343 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHH
Confidence 00002223445555666666666644 67777777655554444433
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=9.5e-09 Score=112.07 Aligned_cols=147 Identities=14% Similarity=0.080 Sum_probs=116.6
Q ss_pred HHHHHHHHHHhhhhhhhhcccHHHHHH-HhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHH
Q 011424 43 LFSIWIIVLCTALPISSLFPFLYFMIK-DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS 121 (486)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~ 121 (486)
++...+..++..+....+...+|.+.+ .+|.+..+ .|++.+.+.++.++++++.|+++|+.++++.+..+.++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~------~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~ 300 (1140)
T PRK06814 227 IWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENV------ATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALL 300 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHH------HHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHH
Confidence 333444444444444445456676554 57898888 99999999999999999999999998888877777666
Q ss_pred HHHHHHHHhcc--------------------chHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhh
Q 011424 122 VVIFNTLFGLS--------------------VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWG 180 (486)
Q Consensus 122 ~~~~~~~~~~a--------------------~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~ 180 (486)
.+++.+..++. ++.+.+++.-++.|++.+...+. .+++.+.+|+++||+++|..+....
T Consensus 301 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~ 380 (1140)
T PRK06814 301 MGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNA 380 (1140)
T ss_pred HHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHH
Confidence 66655544443 67788888899999998887765 9999999999999999999999999
Q ss_pred hhHHHHhhhhhhhcc
Q 011424 181 IGLIIGPALGGFLAQ 195 (486)
Q Consensus 181 ~g~~ig~~l~~~l~~ 195 (486)
+|..+++++.+.+.+
T Consensus 381 ~~~~ig~~~~g~l~~ 395 (1140)
T PRK06814 381 AFMVAGTIILALLQA 395 (1140)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998874
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.7e-09 Score=101.47 Aligned_cols=112 Identities=19% Similarity=0.260 Sum_probs=89.1
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHhhccchhhH-HHHHh
Q 011424 84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGL--SVNFWMAVLTRFLLGSLNGLLGPI-KAYAC 160 (486)
Q Consensus 84 ~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~--a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~ 160 (486)
.+.+.....+...++.+++++++||+|+|+.+..+.++.++..+...+ .++.+.+++..++.|++.+...+. .++++
T Consensus 266 ~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~a 345 (444)
T PRK09669 266 ATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFS 345 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777888899999999999999999999888766654433222 357777888889999998888886 89999
Q ss_pred hhccc-------hhhhhHhhHHHHHhhhhHHHHhhhhhhhcc
Q 011424 161 EIFRE-------EHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (486)
Q Consensus 161 ~~~~~-------~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~ 195 (486)
|..+. ++.|..++..+....+|..+|+.+++.+.+
T Consensus 346 d~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~ 387 (444)
T PRK09669 346 DVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILA 387 (444)
T ss_pred hhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88863 234567788888899999999999999987
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.8e-07 Score=90.44 Aligned_cols=150 Identities=9% Similarity=-0.070 Sum_probs=104.6
Q ss_pred hHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 011424 284 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVL 363 (486)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (486)
+....+.++...+.........|.+ .+++|.++.+.++..+...++..++++ ..+.+.||+|||+.+..+..+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~p~i------~~~~~~s~~~~gl~~~~~~~g~~i~~~-~~g~l~dr~G~r~~l~~g~~~ 100 (438)
T PRK10133 28 FALLCSLFFLWAVANNLNDILLPQF------QQAFTLTNFQAGLIQSAFYFGYFIIPI-PAGILMKKLSYKAGIITGLFL 100 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHhCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCcHHHHHHHHHH
Confidence 3444455555555555554455543 234799999999999999999999998 556666777999999999888
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHH
Q 011424 364 TIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALF 443 (486)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~ 443 (486)
..++.+++...... ..+..+.+.-++.+.+.....+..+.++.+..|++++....++.+....+|..++|.+.+.+.
T Consensus 101 ~~~~~~l~~~~~~a---~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 101 YALGAALFWPAAEI---MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777654322111 122234444455556666667777777777666666666899999999999999999887665
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.2e-07 Score=91.72 Aligned_cols=128 Identities=16% Similarity=0.204 Sum_probs=102.9
Q ss_pred ccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhh-cCCchhhhHHHHHHHHHHHHHhccch------
Q 011424 62 PFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVIIMGTASVVIFNTLFGLSVN------ 134 (486)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr-~Grr~~l~~~~~~~~~~~~~~~~a~~------ 134 (486)
.+..++.+.+|.++++ ...+...+....-+..+++|.++|+ +||++.+.++.++..++.++.+++..
T Consensus 9 iLvlYl~~~lg~~~~~------A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~ 82 (654)
T TIGR00926 9 ILVLYFLNFLGFSEST------STVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHP 82 (654)
T ss_pred HHHHHHHHHcCCcHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccc
Confidence 3445666778888887 7777888888888899999999996 59999999999999999888776421
Q ss_pred --HHHHHHHHHHHHhhccchhhH-HHHHhhhccch---hhhhHhhHHHHHhhhhHHHHhhhhhhhcc
Q 011424 135 --FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREE---HQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (486)
Q Consensus 135 --~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~---~r~~~~~~~~~~~~~g~~ig~~l~~~l~~ 195 (486)
....+++-.+..+|.|..-|+ .+...|.++++ +|...+.++..+.++|+.+++++..++.+
T Consensus 83 ~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~ 149 (654)
T TIGR00926 83 LHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRG 149 (654)
T ss_pred hHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233556667777788888886 99999988754 47788899999999999999999988875
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.2e-08 Score=91.57 Aligned_cols=146 Identities=19% Similarity=0.231 Sum_probs=123.6
Q ss_pred CccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhh
Q 011424 316 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNL 395 (486)
Q Consensus 316 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (486)
...+-+..+.|+++....+..++.+++.+.+.+ |+|+|..+.++..++....+++.+..... .+++.=.+.+.
T Consensus 99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~-~iGy~ipm~~Gl~vmf~sTilFafg~sy~------~l~vAR~LQgv 171 (464)
T KOG3764|consen 99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLID-RIGYKIPMVAGLFVMFLSTILFAFGNSYP------MLFVARSLQGV 171 (464)
T ss_pred cCccccccchhHHHHHHHHHHHHhcccchhhHH-HhccccHHHHHHHHHHHHHHHHHHcchhH------HHHHHHHHhhh
Confidence 345667888999999999999999997766666 67999999999999998888887754332 45555566777
Q ss_pred hhhhhhhhhhhhhhhccccCc-hhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHH
Q 011424 396 LSVSIITGLFILQNRAVDQDQ-RGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVL 474 (486)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~-~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~ 474 (486)
+.........+++++.+|++. |++++|+.-.+..+|-.+||.++|.+++.. |++.+|+++++++++...
T Consensus 172 gsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~----------Gk~aPFlVL~~v~Lld~~ 241 (464)
T KOG3764|consen 172 GSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFA----------GKSAPFLVLAIVLLLDGA 241 (464)
T ss_pred hHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhc----------CCcCcHHHHHHHHHHHHH
Confidence 777778888888889888655 799999999999999999999999999998 899999999999999888
Q ss_pred Hhhc
Q 011424 475 MTFK 478 (486)
Q Consensus 475 ~~~~ 478 (486)
+.++
T Consensus 242 L~l~ 245 (464)
T KOG3764|consen 242 LQLL 245 (464)
T ss_pred HHHh
Confidence 8776
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.1e-09 Score=100.27 Aligned_cols=151 Identities=14% Similarity=0.060 Sum_probs=126.3
Q ss_pred CccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhh
Q 011424 316 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNL 395 (486)
Q Consensus 316 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (486)
..++.++...|++.....+..+++++ +.+++.||++|++++.++..+-.+..++-.+.. +...+.+.=.+.+.
T Consensus 61 ~~fni~~s~~Gll~~vf~v~~~i~sP-l~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~------~Fwq~~l~R~~vGi 133 (493)
T KOG1330|consen 61 TYFNISDSELGLLQTVFIVVFMIASP-LFGYLADRYNRKRVIAVGIFIWTLAVFASGFSN------HFWQVLLCRGFVGI 133 (493)
T ss_pred HhcCCCchhccchhHHHHHHHHHHHH-HHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHH------HHHHHHHHHHHhcc
Confidence 34789999999999999999999999 778888888999999998888777777666542 23355566667788
Q ss_pred hhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHH
Q 011424 396 LSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLM 475 (486)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~ 475 (486)
+.....|..++++++.+|.++|+++.++.+....+|..+|-...+.+.+.. .-|++.|...+++.++..++
T Consensus 134 GeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~---------~~Wr~af~~~avl~vi~~~L 204 (493)
T KOG1330|consen 134 GEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT---------FWWRWAFRGSAVLGVIVGLL 204 (493)
T ss_pred chhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc---------cceEEEEEeehHHHHHHHHH
Confidence 888999999999999999999999999999999999999988888777666 13999999999999998888
Q ss_pred hhcccccc
Q 011424 476 TFKPFLAQ 483 (486)
Q Consensus 476 ~~~~~~~~ 483 (486)
.++ +.+|
T Consensus 205 ~~~-f~~e 211 (493)
T KOG1330|consen 205 VFL-FVRE 211 (493)
T ss_pred HHh-hccC
Confidence 776 4544
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.9e-08 Score=82.73 Aligned_cols=329 Identities=12% Similarity=0.052 Sum_probs=174.2
Q ss_pred HHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHH
Q 011424 50 VLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLF 129 (486)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~ 129 (486)
.++...+.....|.+-.+-++++....+ +|.+.-+.+-...+...+.|.|+||-|||+.-+.-++.+.+++ +.
T Consensus 46 yslmmAgDWLQgPYvYyLYstYgFgkG~------IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iT 118 (454)
T KOG4332|consen 46 YSLMMAGDWLQGPYVYYLYSTYGFGKGD------IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-IT 118 (454)
T ss_pred HHHHHhhhhhcCceeeeeehhcCccCCc------cceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-Hh
Confidence 3444455566778877778889999888 8888888878888899999999999999997444444333332 22
Q ss_pred hccchHHHHHHHHHHHHhhccchhhH--HHHHhhhccchh-----hhhHhhHH-HHHhhhhHHHHhhhhhhhcccCccCC
Q 011424 130 GLSVNFWMAVLTRFLLGSLNGLLGPI--KAYACEIFREEH-----QALGLSTV-STAWGIGLIIGPALGGFLAQPAEKYP 201 (486)
Q Consensus 130 ~~a~~~~~l~~~r~l~G~~~g~~~~~--~~~i~~~~~~~~-----r~~~~~~~-~~~~~~g~~ig~~l~~~l~~~~~~~~ 201 (486)
-.++.|-.++++|++-|+..+....+ .-++.|...++. ...-++-. ..+..+-.+++.+.+-.+.+
T Consensus 119 KhSpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd------ 192 (454)
T KOG4332|consen 119 KHSPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVD------ 192 (454)
T ss_pred hcCCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHH------
Confidence 34789999999999999998887775 456777653221 11111111 12333444555555555555
Q ss_pred cccccccccccCCChhhHHHHHHHHHHH-HHHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCCCccccccc
Q 011424 202 NLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLK 280 (486)
Q Consensus 202 ~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (486)
.++ .+--.||...+....+. .+.+--..|+..+..++++ . ..+-....+.+..
T Consensus 193 -~~s-------lGPVAPFdAAacfLaigmAvil~~W~ENygdps~~kd----l--------------ltqf~gaa~aiaS 246 (454)
T KOG4332|consen 193 -TFS-------LGPVAPFDAAACFLAIGMAVILSSWSENYGDPSENKD----L--------------LTQFKGAARAIAS 246 (454)
T ss_pred -Hhc-------cCCCCchHHHHHHHHHHHHHHHhhhhhccCChhhhHH----H--------------HHHhhHhHHHHhc
Confidence 222 22223333333222222 2222222232211111100 0 0001112234455
Q ss_pred chhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHH
Q 011424 281 NWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG-PIMVARI 359 (486)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 359 (486)
++++..+..+..++-...+.+ .++..|....+ -...--|.+++...+..++++-+..+++.+... -.....+
T Consensus 247 D~ki~LLG~iqsLFE~smytF-----VFLWTPaLspn--~e~iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqi 319 (454)
T KOG4332|consen 247 DEKIALLGAIQSLFEGSMYTF-----VFLWTPALSPN--DEEIPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQI 319 (454)
T ss_pred chHHHHHHHHHHHHhhhhhee-----eeeecccCCCC--cccCCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHH
Confidence 666554444443333222222 23333322211 112225778888888888888756666666422 2233344
Q ss_pred HHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHH
Q 011424 360 AGVLTIPLLTSYPYIAMLS-GFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIA 424 (486)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 424 (486)
...+....+.+........ +......-++..+..-.+.+..+|...-+-++..|++.|++.+-..
T Consensus 320 vf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEearstimNfF 385 (454)
T KOG4332|consen 320 VFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEARSTIMNFF 385 (454)
T ss_pred HHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHHHhhhhhhe
Confidence 4444333333322222111 1122222234444444566677888888888889999998765444
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=8.9e-08 Score=88.38 Aligned_cols=143 Identities=30% Similarity=0.476 Sum_probs=119.3
Q ss_pred HHHHHHhhhhhhhhcccHHHHHHHhcccc--cchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHH
Q 011424 47 WIIVLCTALPISSLFPFLYFMIKDFQIAK--REEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI 124 (486)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~ 124 (486)
....+....+.....+..+.+.++++.+. .+ .++..+.+.++..++.++.|.++||+|||+.+..+.....+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 81 (338)
T COG0477 8 ALAALLLGLDLGLLSPALPLLLSTLSLSSGRLL------YGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLL 81 (338)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHcCCCchhHH------HHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHH
Confidence 33444444666777778888888887776 35 89999999999999999999999999999888888876666
Q ss_pred HHHHHhccch--HHHHHHHHHHHHhhccchhhH-HHHHhhhccc-hhhhhHhhHHHH-HhhhhHHHHhhhhhhhcc
Q 011424 125 FNTLFGLSVN--FWMAVLTRFLLGSLNGLLGPI-KAYACEIFRE-EHQALGLSTVST-AWGIGLIIGPALGGFLAQ 195 (486)
Q Consensus 125 ~~~~~~~a~~--~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~-~~r~~~~~~~~~-~~~~g~~ig~~l~~~l~~ 195 (486)
+.+++++..+ .+.+++.|+++|++.+...+. .+++.|+.|+ ++|+...+.... ...+|..++|.+++.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T COG0477 82 GTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLG 157 (338)
T ss_pred HHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777766 999999999999998888776 9999999998 789999998888 588899999988888876
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.2e-08 Score=102.58 Aligned_cols=165 Identities=13% Similarity=0.019 Sum_probs=123.7
Q ss_pred cccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhh-------------
Q 011424 313 KKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSG------------- 379 (486)
Q Consensus 313 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 379 (486)
...+++++++.+.|++.+...++..++.++ ..++.+|.+|++.+.++.++..++.+++.+.+...+
T Consensus 58 ~iek~F~lss~~~G~i~s~~~i~~~~~~i~-v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~ 136 (633)
T TIGR00805 58 TIERRFKLSTSSSGLINGSYEIGNLLLIIF-VSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGN 136 (633)
T ss_pred hhhhhhCCCCCcceeeeehhhHHHHHHHHH-HHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccccc
Confidence 345568999999999999999999999884 556666679999999998888888777765431100
Q ss_pred --------------------------------hhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHH
Q 011424 380 --------------------------------FGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTG 427 (486)
Q Consensus 380 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 427 (486)
...+..+++.-++.+++.....+...+++.|.+|+++|+...|+.+..
T Consensus 137 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~ 216 (633)
T TIGR00805 137 LSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESI 216 (633)
T ss_pred ccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHH
Confidence 012344556677788888888899999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHhhhc------------CCCCCCchhHHHHHHHHHHHHHHHHhhc
Q 011424 428 MSLFKAAGPAGGGALFSWAQKRL------------DASFLPGSQMVFFVLNVVEAIGVLMTFK 478 (486)
Q Consensus 428 ~~~g~~~~~~~~g~l~~~~~~~~------------~~~~~~g~~~~f~~~~~~~~~~~~~~~~ 478 (486)
..+|..+|+.+.+.+.+...+.. .+.+.++|...|++.+++.++..+..++
T Consensus 217 ~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~ 279 (633)
T TIGR00805 217 AVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFF 279 (633)
T ss_pred HHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999987643211 1111224777788888777776554433
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.3e-08 Score=99.02 Aligned_cols=156 Identities=10% Similarity=-0.036 Sum_probs=118.9
Q ss_pred HHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHhcc----------chHHHH
Q 011424 69 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS----------VNFWMA 138 (486)
Q Consensus 69 ~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a----------~~~~~l 138 (486)
+++|.++.+ .|.+.....++..++....+++.+|++.|+++.++.++.+++.+..... ++.+.+
T Consensus 281 ~~lG~s~~~------~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~ 354 (468)
T TIGR00788 281 QCLPGGPSF------SGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFV 354 (468)
T ss_pred ccCCCCcch------hhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeee
Confidence 568999999 9999999999999999999999999999999999999999888665321 344455
Q ss_pred HHHHHHHHhhccchhh-HHHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccCCcccccccccccCCChh
Q 011424 139 VLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFL 217 (486)
Q Consensus 139 ~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~ 217 (486)
...-++.+++.+.... ...++.+..|++++++..++..+..++|..+++.+++.+.+ .+|-.....+.-| .
T Consensus 355 ~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~-------~~g~~~~~~~~~~-~ 426 (468)
T TIGR00788 355 LGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLME-------TIGITCDNSNNLW-L 426 (468)
T ss_pred eehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHH-------HcCCCcccccchH-H
Confidence 5666788888777655 59999999999999999999999999999999999999998 4442211101112 2
Q ss_pred hHHHHHHHHHHHHHHHHhcCC
Q 011424 218 PCLCISLFAFGVTIAAFWLPE 238 (486)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~e 238 (486)
...+..+..++.+....++|+
T Consensus 427 ~i~i~~~~~l~~l~~~~llP~ 447 (468)
T TIGR00788 427 LILGHSLAPLLPLPLLHLLPR 447 (468)
T ss_pred HHHHHHHHHHHHHHHHHhCCC
Confidence 233334444444445557886
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.2e-08 Score=92.36 Aligned_cols=144 Identities=21% Similarity=0.327 Sum_probs=126.0
Q ss_pred HHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHH
Q 011424 46 IWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF 125 (486)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~ 125 (486)
+++..++.+.+...+...+-...||.+..+.- .|.....-..+-++.-++.+++.+|+|+-+++..++.+..+=
T Consensus 376 ff~~av~mG~g~~lv~tFLfWHled~~~~~~L------fGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~R 449 (618)
T KOG3762|consen 376 FFFVAVVMGAGVGLVFTFLFWHLEDLGGIKTL------FGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGR 449 (618)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCccee------eeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHH
Confidence 44555566666677777777788999877776 787777888888899999999999999999999999999999
Q ss_pred HHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHH-HhhhhHHHHhhhhhhhcc
Q 011424 126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVST-AWGIGLIIGPALGGFLAQ 195 (486)
Q Consensus 126 ~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~ig~~l~~~l~~ 195 (486)
.+.....+|.|+.+-..+++|+..+..+.+ .+|+++..||+-|..+.++.+. ..++|--+|.++||.+.+
T Consensus 450 f~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~ 521 (618)
T KOG3762|consen 450 FLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVE 521 (618)
T ss_pred HHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhe
Confidence 999999999999999999999998888876 9999999999999999997765 457999999999999998
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.6e-07 Score=87.77 Aligned_cols=166 Identities=12% Similarity=0.013 Sum_probs=110.1
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHH---hhhhHHHHHHH-HHHHHHHHHHHHHHHhhh---------hhhHH-
Q 011424 318 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLER---ILGPIMVARIA-GVLTIPLLTSYPYIAMLS---------GFGLA- 383 (486)
Q Consensus 318 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---------~~~~~- 383 (486)
+|.+....+.+.....+.+++.+++.+.+.|| |+|||+..... .....+.+.++++..... ....+
T Consensus 34 lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~ 113 (477)
T TIGR01301 34 LGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRA 113 (477)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHH
Confidence 68999999999999999999999966666554 68988887765 444444444444432210 00011
Q ss_pred -HHHHHHHHHHhhhhhhhhhhhhhhhhhccccCch--hhHHhHHHHHHHHHHHHHhhhHHHH--HHHHh---hhcCCCCC
Q 011424 384 -FLLNCASVVKNLLSVSIITGLFILQNRAVDQDQR--GAANGIAMTGMSLFKAAGPAGGGAL--FSWAQ---KRLDASFL 455 (486)
Q Consensus 384 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~g~~~~~~~~g~~~~~~~~g~l--~~~~~---~~~~~~~~ 455 (486)
...++...+..+......+...+++.|.+|+++| +.+.++.+....+|+.+++.+.+.. .+... +......-
T Consensus 114 i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~ 193 (477)
T TIGR01301 114 IIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSC 193 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccccccccccc
Confidence 1122222233345555667778899999998765 6899999999999999999998865 22211 00001011
Q ss_pred CchhHHHHHHHHHHHHHHHHhhccccccC
Q 011424 456 PGSQMVFFVLNVVEAIGVLMTFKPFLAQR 484 (486)
Q Consensus 456 ~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 484 (486)
.+++..|++.+++.+++.++..+ ..||+
T Consensus 194 ~~~~~~F~i~a~~l~i~~l~t~~-~v~E~ 221 (477)
T TIGR01301 194 ANLKSCFLIDIILLAILTYIALS-AVKEN 221 (477)
T ss_pred chHHHHHHHHHHHHHHHHHHHee-eeecc
Confidence 25788999999988888888877 56664
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.8e-07 Score=80.28 Aligned_cols=147 Identities=17% Similarity=0.128 Sum_probs=118.1
Q ss_pred HHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhc-CCchhhhHHHHH
Q 011424 43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-GRKPVIIMGTAS 121 (486)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~-Grr~~l~~~~~~ 121 (486)
-+.+.+..-+..+..++...-+|.+..|.|.|..+ .|++.+...+.....++....+++|. ++|+..+....+
T Consensus 210 aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~------aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~ 283 (395)
T COG2807 210 AWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAE------AGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLL 283 (395)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHH------hhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 44555556667777888888999999999999999 99999999999999999999999965 678888888888
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhcc-chhhhhHhhHHHHHhhhhHHHHhhhhhhhccc
Q 011424 122 VVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFR-EEHQALGLSTVSTAWGIGLIIGPALGGFLAQP 196 (486)
Q Consensus 122 ~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~ 196 (486)
+.++.+.+.+.|.-..+.. -++.|+|.|...+. ..++.+..+ +++-++-.+..+....+=...||.+.|++.|.
T Consensus 284 ~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa 359 (395)
T COG2807 284 MLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDA 359 (395)
T ss_pred HHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHh
Confidence 8888888877764333333 48999998888885 888887765 45555666676766666678899999999983
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.5e-07 Score=87.54 Aligned_cols=150 Identities=17% Similarity=0.066 Sum_probs=97.5
Q ss_pred cCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHh
Q 011424 315 LGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKN 394 (486)
Q Consensus 315 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (486)
.+++|++..+.+.+.......+ ...+ ..+++.||+|+|+++.++.++..++.++..+.....-......+.+..++.+
T Consensus 54 ~~~lgls~~~l~~i~svg~~~g-~~~l-p~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G 131 (591)
T PTZ00207 54 QARYNLTQRDLSTITTVGIAVG-YFLL-PYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMT 131 (591)
T ss_pred HHHhCcCHHHHHHHHHHHHHHH-HHHH-HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHH
Confidence 3458999999988876633333 3444 4577888889999999999988888877766421100011222333333444
Q ss_pred hhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHH
Q 011424 395 LLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVL 474 (486)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~ 474 (486)
.+.....+.....+.+.+| ++||++.|+......+|+++.+.+...++.. ++...|++.+++.++..+
T Consensus 132 ~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~-----------~~~~~fl~l~vl~~vv~l 199 (591)
T PTZ00207 132 LGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSD-----------NTSAYFFFLMSFALVVGI 199 (591)
T ss_pred HHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hHHHHHHHHHHHHHHHHH
Confidence 4555555555666677776 7899999999999999998755555555442 355666776666666555
Q ss_pred Hhhc
Q 011424 475 MTFK 478 (486)
Q Consensus 475 ~~~~ 478 (486)
+.+.
T Consensus 200 l~~~ 203 (591)
T PTZ00207 200 LAIV 203 (591)
T ss_pred HHHh
Confidence 5443
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.73 E-value=9.2e-07 Score=84.91 Aligned_cols=148 Identities=18% Similarity=0.208 Sum_probs=127.4
Q ss_pred CccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhh
Q 011424 316 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNL 395 (486)
Q Consensus 316 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (486)
.++.++..+-+++++....+.+++.+ -++++.+|+|.|+++..+.++..+..++.++..... .+ .+++.=++.|.
T Consensus 66 ~~~~ws~~~k~~i~ss~~~G~i~~~i-P~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~---~~-~~~~~R~lqGl 140 (466)
T KOG2532|consen 66 GEYDWSSTEKGLIFSSFFWGYILGQI-PGGYLADKFGARRVFFISGLISALLTLLTPLAASIG---FY-LLLVLRFLQGL 140 (466)
T ss_pred ceecCCHHHHHHHHHHHHHHHHHHHc-CcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhc---ch-hhHHHHHHhHH
Confidence 35889999999999999999999988 566777778999999999999998888888776433 22 44566677788
Q ss_pred hhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHH-HhhhcCCCCCCchhHHHHHHHHHHHHHHH
Q 011424 396 LSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSW-AQKRLDASFLPGSQMVFFVLNVVEAIGVL 474 (486)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-~~~~~~~~~~~g~~~~f~~~~~~~~~~~~ 474 (486)
..+...|....+..+-.|+++|++..++.....++|.+++-.+.|.+-+. . ||+..|++.+++.++..+
T Consensus 141 ~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~----------GW~sifY~~g~~g~i~~~ 210 (466)
T KOG2532|consen 141 GQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSL----------GWPSIFYVFGIVGLIWFI 210 (466)
T ss_pred HHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCC----------CCchHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999987 4 999999999999888877
Q ss_pred Hhhc
Q 011424 475 MTFK 478 (486)
Q Consensus 475 ~~~~ 478 (486)
+.+.
T Consensus 211 ~w~~ 214 (466)
T KOG2532|consen 211 LWFL 214 (466)
T ss_pred HHHH
Confidence 6655
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.7e-07 Score=90.05 Aligned_cols=148 Identities=11% Similarity=0.065 Sum_probs=94.5
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhh
Q 011424 317 GLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLL 396 (486)
Q Consensus 317 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (486)
+.|-+ ....++.....+...+..+ ..+.++|.+|||.....+.++..++..+..-..... .++....+.+..
T Consensus 73 diG~~-~~~~w~~~~~~l~~av~~~-~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~------~~iag~~l~Gvg 144 (599)
T PF06609_consen 73 DIGGS-DNWSWFSTAWTLASAVSFP-FVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMN------TFIAGMVLYGVG 144 (599)
T ss_pred hcCCC-ccchHHHHHHHHHHHHHHH-hhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHH------HHHHHHHHHHHh
Confidence 35643 4556666677777777777 667778889999999999998888877765543322 233344444443
Q ss_pred hhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHh
Q 011424 397 SVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMT 476 (486)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~ 476 (486)
.+........++|.+|.+.|+.+.++.....-.....+|.+...+... .+|++.|++..+...++++..
T Consensus 145 -aG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~----------~~WRw~~~~~~i~~~i~~vl~ 213 (599)
T PF06609_consen 145 -AGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAH----------SGWRWIFYIFIIWSGIALVLI 213 (599)
T ss_pred -hHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccC----------CCcchHHHHHHHHHHHHHHHH
Confidence 344445566789999999998877665543333333444444333222 279999999888777776655
Q ss_pred hcccccc
Q 011424 477 FKPFLAQ 483 (486)
Q Consensus 477 ~~~~~~~ 483 (486)
++++.|+
T Consensus 214 ~~fY~PP 220 (599)
T PF06609_consen 214 FFFYFPP 220 (599)
T ss_pred HHHhCCC
Confidence 4434443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.3e-07 Score=83.11 Aligned_cols=118 Identities=14% Similarity=0.040 Sum_probs=92.5
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhh
Q 011424 319 NYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSV 398 (486)
Q Consensus 319 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (486)
+.+....|++-+.+.+...+.++ ..+.++|+.|||.++.++.....+..++.+..... ..++..=+..|.+ -
T Consensus 64 ~~~~~yaGflGSsF~ilQ~~sS~-~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F------~afv~aR~l~Gi~-k 135 (451)
T KOG2615|consen 64 GASVFYAGFLGSSFSILQFISSP-LWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNF------AAFVLARFLGGIF-K 135 (451)
T ss_pred cccchhhhhHhhHHHHHHHHhhh-hhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhhhc-c
Confidence 45667789999999999999999 55566777899999999988888766666554322 1222223333333 4
Q ss_pred hhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHH
Q 011424 399 SIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFS 444 (486)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 444 (486)
+......++++|++++++|+.+++.+++...+|-++||.++|++..
T Consensus 136 gnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 136 GNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred CchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 5567788999999999999999999999999999999999999988
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.7e-07 Score=84.58 Aligned_cols=186 Identities=13% Similarity=0.061 Sum_probs=135.8
Q ss_pred ccccc-hhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHH-HHhhhhH
Q 011424 277 SLLKN-WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFL-ERILGPI 354 (486)
Q Consensus 277 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 354 (486)
..+++ |.++.....-+.=-+..++....+..|++...... +|+|.+++.-+...+....-+... .++++ ||..|+|
T Consensus 15 ~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~g-Lg~~~~~A~~l~~~y~slVY~t~i-~GG~laDr~LG~~ 92 (498)
T COG3104 15 KFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDG-LGFDETHATGLFSAYGSLVYLTPI-IGGWLADRVLGTR 92 (498)
T ss_pred ccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccc-CCcChHhhHHHHHHHHHHHHHHHH-HHHHHHHHhcchh
Confidence 34454 44555555556666677777778888887665444 779999888777776666656655 45555 5557999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccc--CchhhHHhHHHHHHHHHH
Q 011424 355 MVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQ--DQRGAANGIAMTGMSLFK 432 (486)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~~g~ 432 (486)
+.+.++.++..++.+++...... ....+.+...+...+.+..=+....+..|.+|+ .+|..+.++..+..++|+
T Consensus 93 ~tI~lGail~~iGh~~L~~~~~~----~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGs 168 (498)
T COG3104 93 RTIVLGAILMAIGHLVLAISSVS----GPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGS 168 (498)
T ss_pred HHHHHHHHHHHHHHHHHhccccc----cccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHH
Confidence 99999999999998888765300 111233333344456666777788888888864 347788888888999999
Q ss_pred HHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhc
Q 011424 433 AAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK 478 (486)
Q Consensus 433 ~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~ 478 (486)
.++|.+.+++.++. ||...|...++-..++.+..+.
T Consensus 169 l~~p~i~~~~~~~~----------g~~~gF~~aavGm~~gl~~f~~ 204 (498)
T COG3104 169 LIAPIITGLLAINY----------GWHVGFGLAAVGMIIGLVIFLL 204 (498)
T ss_pred HHHHHHHHHHHHhh----------CHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998 8999999999999988887765
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.1e-08 Score=67.32 Aligned_cols=81 Identities=16% Similarity=0.271 Sum_probs=75.2
Q ss_pred hhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHhcc
Q 011424 53 TALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS 132 (486)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a 132 (486)
.++++..+.|.+|.+++|.++|.++ .|++.+...+||.+|.+...++.++..+++.+..+.+...+..+.+++.
T Consensus 4 mGigRFayTplLP~M~~~~~ls~~~------ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 4 MGIGRFAYTPLLPLMQADGGLSLSQ------AGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred hhhHHHHHHhHhHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667889999999999999999999 9999999999999999999999999888999999999999999999999
Q ss_pred chHHHHH
Q 011424 133 VNFWMAV 139 (486)
Q Consensus 133 ~~~~~l~ 139 (486)
++++.+.
T Consensus 78 ~~~~~w~ 84 (85)
T PF06779_consen 78 HSFWLWS 84 (85)
T ss_pred hchHHHh
Confidence 8877653
|
Note that many members are hypothetical proteins. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.4e-07 Score=88.32 Aligned_cols=144 Identities=12% Similarity=0.145 Sum_probs=93.2
Q ss_pred HHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHH
Q 011424 46 IWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF 125 (486)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~ 125 (486)
+....++.............++.++..-+++. .+.+.+.+.++.+++.+++++++||+|+|+++..+..+.++.
T Consensus 233 l~~~~~~~~~~~~~~~~~~~y~~~y~~g~~~~------~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~ 306 (460)
T PRK11462 233 VGLLTIFNILAVCVRGGAMMYYVTWILGTPEV------FVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVI 306 (460)
T ss_pred HHHHHHHHHHHHHHHHhHhhhhhhhhcCChHH------HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 33334444444444444444555444333333 566778888899999999999999999999887655544443
Q ss_pred HHHHhccc--hHHHHHHHHHHHHhhccchhhH-HHHHhhhcc-------chhhhhHhhHHHHHhhhhHHHHhhhhhhhcc
Q 011424 126 NTLFGLSV--NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFR-------EEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (486)
Q Consensus 126 ~~~~~~a~--~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~-------~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~ 195 (486)
.++..+.+ +...+++.-++.|++.+...+. .++++|..+ +++.|..++......-+|..+++.+++++.+
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~ 386 (460)
T PRK11462 307 SLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLA 386 (460)
T ss_pred HHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333322 2334445556677776666664 677777766 3333555677778888999999999999887
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.9e-07 Score=86.61 Aligned_cols=149 Identities=12% Similarity=0.206 Sum_probs=115.2
Q ss_pred hHHHHHHHHHHHhhhhhhhhcccHHHHHHH-hcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHH
Q 011424 41 TELFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT 119 (486)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~ 119 (486)
+.++.+.+..++.....++.+....++.+. +|.++.+ ..+.......+..++.+++.++++|+|+|+++.++.
T Consensus 236 rp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~------~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~ 309 (467)
T COG2211 236 RPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELF------AYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGL 309 (467)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHH------HHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHH
Confidence 334555556666666667777766665543 3444444 667777888888888999999999999999999999
Q ss_pred HHHHHHHHHHhccc--hHHHHHHHHHHHHhhccchhhH-HHHHhhhccc-------hhhhhHhhHHHHHhhhhHHHHhhh
Q 011424 120 ASVVIFNTLFGLSV--NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFRE-------EHQALGLSTVSTAWGIGLIIGPAL 189 (486)
Q Consensus 120 ~~~~~~~~~~~~a~--~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~ig~~l 189 (486)
++..++.++..+.+ +.+.+++..++.+++.+...+. .++++|..+- |.-|...+......=+|..++..+
T Consensus 310 ~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~ 389 (467)
T COG2211 310 LLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFI 389 (467)
T ss_pred HHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999888865 7889999999999998888886 8888877653 233566677777777889999888
Q ss_pred hhhhcc
Q 011424 190 GGFLAQ 195 (486)
Q Consensus 190 ~~~l~~ 195 (486)
.+++..
T Consensus 390 ~g~~L~ 395 (467)
T COG2211 390 PGWILG 395 (467)
T ss_pred HHHHHH
Confidence 888877
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.60 E-value=8.1e-08 Score=88.10 Aligned_cols=193 Identities=14% Similarity=0.027 Sum_probs=133.3
Q ss_pred hHHHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhh--hHhHHHHHH-HHHHHHHhhhhhhhhhhhcCCchhhhH
Q 011424 41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIG--SYAGYVGSS-FMFGRALTSVFWGLVADRYGRKPVIIM 117 (486)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~s~-~~~~~~i~~~~~G~l~dr~Grr~~l~~ 117 (486)
+.++......|+.-+..+..+.....+.+..+..+.+.... +.......+ ...++..|..+...+.|+.|||++.+.
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~ 383 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM 383 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence 34555666777777777778888888899888877653221 112222222 223444577788899999999999999
Q ss_pred HHHHHHHHHHHHhccchH----HHHHHHHHHHHhh--ccchhhHHHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhh
Q 011424 118 GTASVVIFNTLFGLSVNF----WMAVLTRFLLGSL--NGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGG 191 (486)
Q Consensus 118 ~~~~~~~~~~~~~~a~~~----~~l~~~r~l~G~~--~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~ 191 (486)
+.+++++..+..+...|. ..+++...+..+. .|.......+-+|.+|.+-|+..-|+..+..=.|.++|...-.
T Consensus 384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~ 463 (538)
T KOG0252|consen 384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFL 463 (538)
T ss_pred hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhh
Confidence 999999999999988762 2233333333332 2222333556689999999999999999999999999998888
Q ss_pred hhcccCccCCcccccccccccCCChhhHHHHHHHHHHHHHHHHhcCCcccCCC
Q 011424 192 FLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHN 244 (486)
Q Consensus 192 ~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 244 (486)
++.+.. ++. ..+.+..+++.....++..+..+++||+..+..
T Consensus 464 ~~t~~~--yp~---------~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~~~l 505 (538)
T KOG0252|consen 464 YLTDHN--YPP---------NIGVRNVFIILAGCMLLGILFTLLIPETKGKSL 505 (538)
T ss_pred Hhhhcc--CCc---------cccchHHHHHHHHHHHHhHheeEEeecccccCH
Confidence 887632 222 334455557777777777788888998876543
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.8e-06 Score=76.41 Aligned_cols=385 Identities=12% Similarity=0.063 Sum_probs=195.5
Q ss_pred HHHHHHHHHhhhhhhhhcccHHHHHHH--hcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhh-----hcCCchhhh
Q 011424 44 FSIWIIVLCTALPISSLFPFLYFMIKD--FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD-----RYGRKPVII 116 (486)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~d-----r~Grr~~l~ 116 (486)
.++.+.+++++...+.....+|.+.++ -+.|.+| .+...-+ ...+ -.-++|.++.| |+||||..+
T Consensus 3 ~lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q------~~~fSla-~~Pf-SlKlLWaPiVDs~y~~~~GRRKSWi 74 (544)
T PF13000_consen 3 ALLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQ------QAIFSLA-SYPF-SLKLLWAPIVDSVYSKRIGRRKSWI 74 (544)
T ss_pred eHHHHHHHHcCcccccccccchhhhccccCCCChhH------heeeeee-echh-HHHHhhhhhhhhhcccccCCcchhh
Confidence 345667788888888877788999888 6888877 4332211 1111 12345555555 899999877
Q ss_pred HHH-HHHHHHHHHHhccc------------------------hHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhh
Q 011424 117 MGT-ASVVIFNTLFGLSV------------------------NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQAL 170 (486)
Q Consensus 117 ~~~-~~~~~~~~~~~~a~------------------------~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~ 170 (486)
+-. .+.++..+..+... +...+...-++.=+-.+....+ -.+.-....+++++.
T Consensus 75 iP~Q~l~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ 154 (544)
T PF13000_consen 75 IPIQYLSGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGY 154 (544)
T ss_pred hHHHHHHHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcch
Confidence 643 33333333322211 1112333333333334444443 455555667788888
Q ss_pred HhhHHHHHhhhhHHHHhhhhhhhcccC--c----cCCcccccccccccCCChhhHHHHHHHHHHHHHHHHhcCCcccCCC
Q 011424 171 GLSTVSTAWGIGLIIGPALGGFLAQPA--E----KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHN 244 (486)
Q Consensus 171 ~~~~~~~~~~~g~~ig~~l~~~l~~~~--~----~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 244 (486)
+..-...+.+.|..++-.+--.+-+.. + ..+.-.|.-. .+=..- ..+.+..++...+.++-+|.+..+.
T Consensus 155 ASTcqtvG~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvt----l~~yl~-fwg~~~l~~T~~v~~~k~E~~~~~~ 229 (544)
T PF13000_consen 155 ASTCQTVGQTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVT----LSGYLK-FWGWVFLIVTILVAFFKKEKPHSES 229 (544)
T ss_pred HHHHHHhHhhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeee----HHHHHH-HHHHHHHHHHHHHheEeeccccccc
Confidence 877777777777777665544443211 0 0111111100 000011 1122222233344444455443221
Q ss_pred CCC-Ccc---cchhhhc--cccccc--hhhh---cccCCCcccccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCcc
Q 011424 245 DDD-DSC---DVSYDAL--ESASAE--VKEE---EGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPK 313 (486)
Q Consensus 245 ~~~-~~~---~~~~~~~--~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (486)
..+ +.. +...++. +.++.+ ..++ -++.-+...+++|-|++..+.+.....-..+........+=+.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Y~~l~~ilkLp~V~~li~ilL~~KigF~a~da~T~LKLl--- 306 (544)
T PF13000_consen 230 LPKIEPINKSDGKSKEISIEYDESDVISTEEILSIKDVYKSLWKILKLPNVQTLIIILLTAKIGFQANDAVTSLKLL--- 306 (544)
T ss_pred CccccccccccccccccceecccccccchhhhhhHHHHHHHHHHHHcCchHHHHHHHHHHHHhccccchhhhHHHHH---
Confidence 111 000 0000000 000000 0000 0111123345677788877777776666555544444333222
Q ss_pred ccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhh--------------------------HHHHHHHHHHHHHH
Q 011424 314 KLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGP--------------------------IMVARIAGVLTIPL 367 (486)
Q Consensus 314 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~ 367 (486)
+.|++.++.+.+..+..=..++.....+++...+-.. .+....+...-.+.
T Consensus 307 ---EkG~~KE~LAl~~li~~P~qii~~~~~~Kws~g~~P~~~~~~~l~~~~~~~~~~~~l~g~~g~L~~Wl~af~gRL~~ 383 (544)
T PF13000_consen 307 ---EKGLSKEDLALLVLIDFPFQIILPYYIGKWSAGSPPLDVDNKALPNFSRANKIIRLLVGDAGALRPWLWAFWGRLVA 383 (544)
T ss_pred ---HcCCCHHHhHHHHHHhhhHHHHHHHHhhhhhcCCCccccccccccccccccchhhhhhccchhhHHHHHHHHHHHHH
Confidence 3689988888777666556666666566665443210 01111111111111
Q ss_pred HHHHHH----HH--hhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHH
Q 011424 368 LTSYPY----IA--MLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGA 441 (486)
Q Consensus 368 ~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~ 441 (486)
.++... .+ ...+...+..+++..++..+.....+....+.-+++.+|..-|+.+.+.|++.++|+---..+.=+
T Consensus 384 a~l~~~iV~~fP~~g~v~~~Yf~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~ 463 (544)
T PF13000_consen 384 ALLAQLIVYFFPSDGPVPTYYFLLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLW 463 (544)
T ss_pred HHHHHheEEeCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHH
Confidence 111000 01 001122344455555666666677777788888889999999999999999999999888877777
Q ss_pred HHHHHh
Q 011424 442 LFSWAQ 447 (486)
Q Consensus 442 l~~~~~ 447 (486)
+.|...
T Consensus 464 lVD~fT 469 (544)
T PF13000_consen 464 LVDYFT 469 (544)
T ss_pred Hhhhcc
Confidence 777653
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.7e-06 Score=69.20 Aligned_cols=107 Identities=21% Similarity=0.191 Sum_probs=91.4
Q ss_pred HHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccch
Q 011424 88 GSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREE 166 (486)
Q Consensus 88 ~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~ 166 (486)
.++......+.+++.+.+.+++|.|+.++++.+.+.+-.... +-++.+.++.+-++.|++.+..+++ ..++.+..+++
T Consensus 43 lai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~ 121 (156)
T PF05978_consen 43 LAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEE 121 (156)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHH
Confidence 455666678888889999999999999999999988665544 4577889999999999999999998 89999999999
Q ss_pred hhhhHhhHHHHHhhhhHHHHhhhhhhhcc
Q 011424 167 HQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (486)
Q Consensus 167 ~r~~~~~~~~~~~~~g~~ig~~l~~~l~~ 195 (486)
+|++..+++-.....+.++|.++.-.+.+
T Consensus 122 ~~~~~~~ifw~i~~~s~i~G~~~~~~~~~ 150 (156)
T PF05978_consen 122 TIGRNTGIFWAIFQSSLIFGNLFLFFIFQ 150 (156)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999998888888888887665543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=8.3e-06 Score=80.84 Aligned_cols=144 Identities=15% Similarity=-0.023 Sum_probs=110.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhh
Q 011424 324 MVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITG 403 (486)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (486)
+.+++.+...+++.++++ ..+.+.|++|||+.+..+.+...++.++..+... ...+.+.-++.+++.+.....
T Consensus 90 ~~s~~~s~~~lga~~g~l-~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~------~~~l~~GR~l~G~g~G~~~~~ 162 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSL-LAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPS------WYQLIVGRILTGLGVGGASVL 162 (513)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhh------HHHHHHHHHHhccchhhhhhc
Confidence 458999999999999999 6666888899999999999998888888877653 235566667777777788888
Q ss_pred hhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhcccccc
Q 011424 404 LFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQ 483 (486)
Q Consensus 404 ~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~ 483 (486)
...+.+|..|++.||...+..+....+|..++ .+.+...+.. . .+|+..+.+..+.+++..+..++ .||
T Consensus 163 ~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~-~-------~~Wr~~~~~~~i~~~~~~~~~~~--~pe 231 (513)
T KOG0254|consen 163 APVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKV-Y-------AGWRIPLGLALIPAVILALGMLF--LPE 231 (513)
T ss_pred chhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccC-C-------ccHHHHHHHHHHHHHHHHHHHHh--CCC
Confidence 89999999999999999999998888777777 4444443321 0 16888888877777777776443 676
Q ss_pred CC
Q 011424 484 RH 485 (486)
Q Consensus 484 ~~ 485 (486)
+.
T Consensus 232 sp 233 (513)
T KOG0254|consen 232 SP 233 (513)
T ss_pred Ch
Confidence 53
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.9e-06 Score=81.81 Aligned_cols=157 Identities=15% Similarity=0.128 Sum_probs=117.3
Q ss_pred CccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhh
Q 011424 316 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNL 395 (486)
Q Consensus 316 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (486)
++.++...+.+.+.++..++.+++.+ ...++.+|++..+.+.... ++..++.+.... ..+...+++.-++.|.
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~~-p~~~L~~r~~ls~~l~~~~----~~w~~~~~~~~~--~~s~~~~ialr~llGl 146 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQF-PSGLLGDRFPLSKGLSVSG----ILWGLFGFLTAA--VHSFPGLIALRFLLGL 146 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHh-hHHHHHHhCChHHHHHHHH----HHHHHHHHHHHH--HhhhHHHHHHHHHHHH
Confidence 34667788899999999999999998 7777888877444333332 222222222211 1223355666778888
Q ss_pred hhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHH
Q 011424 396 LSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLM 475 (486)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~ 475 (486)
+.+...|....++..-+.+++|++.+|+.++...+|+++|+.+...+.+..+.. ...||++.|++-+++.++..++
T Consensus 147 ~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~----~~~gW~~~FiI~G~i~~~~gi~ 222 (495)
T KOG2533|consen 147 FESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSG----GLAGWRWLFIIEGVITLVLGIV 222 (495)
T ss_pred HhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCC----CcCCceeehhHHHHHHHHHHhe
Confidence 999999999999999999999999999999999999999999998877632211 1138999999999999999888
Q ss_pred hhccccccC
Q 011424 476 TFKPFLAQR 484 (486)
Q Consensus 476 ~~~~~~~~~ 484 (486)
.++ ++|+.
T Consensus 223 ~f~-~lp~~ 230 (495)
T KOG2533|consen 223 VFF-FLPDN 230 (495)
T ss_pred EEE-EecCC
Confidence 877 66653
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.8e-06 Score=79.08 Aligned_cols=168 Identities=17% Similarity=0.129 Sum_probs=126.7
Q ss_pred hhhhhhhcccH-HHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhh-hcCCchhhhHHHHHHHHHHHHHh-
Q 011424 54 ALPISSLFPFL-YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD-RYGRKPVIIMGTASVVIFNTLFG- 130 (486)
Q Consensus 54 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~d-r~Grr~~l~~~~~~~~~~~~~~~- 130 (486)
.++.++.-+++ |+=.+-||.+..| ..-++..+..|..++....|++.. |.++|+.-.+++.+..++..+..
T Consensus 221 t~a~~~QD~iLEPygg~Vfgmsv~e------TT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~ 294 (403)
T PF03209_consen 221 TLAFFMQDVILEPYGGEVFGMSVGE------TTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIIL 294 (403)
T ss_pred HHHHHhhHHHcCCchhHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 33444444444 4556779999999 889999999999999999999887 67888888888888877765544
Q ss_pred --ccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccCCcccccc
Q 011424 131 --LSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSE 207 (486)
Q Consensus 131 --~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~~~~gw~ 207 (486)
...+.+.+-..-++.|++.|.+... .+.+.|...+++-|..+|.+.....++..++..+++.+.|........ +
T Consensus 295 a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~---~ 371 (403)
T PF03209_consen 295 AGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGN---S 371 (403)
T ss_pred HHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---C
Confidence 3467889999999999999999886 888899999999999999999999999999999999998733211100 0
Q ss_pred cccccCCChhhHHHHHHHHHHHHHHH
Q 011424 208 SLFGKFPYFLPCLCISLFAFGVTIAA 233 (486)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (486)
- ..+|-..|.+-++..++.+.+.
T Consensus 372 --~-~~aY~~VF~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 372 --P-ALAYGVVFALEAVLLLAALVLL 394 (403)
T ss_pred --c-chHHHHHHHHHHHHHHHHHHHH
Confidence 1 3345555555555555444443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.49 E-value=1e-09 Score=107.09 Aligned_cols=165 Identities=19% Similarity=0.289 Sum_probs=103.1
Q ss_pred hhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHh--c--
Q 011424 56 PISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFG--L-- 131 (486)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~--~-- 131 (486)
+........+.+.++.+.++.. . ...+ ..+...++.+....+.||+|||++++.+..+.+++.+..+ .
T Consensus 268 g~~~~~~~~~~i~~~~~~~~~~-~----~~~~---~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~ 339 (451)
T PF00083_consen 268 GINFIFYYSPSIFENAGISNSF-L----ATLI---LGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFL 339 (451)
T ss_pred cccccccccccccccccccccc-c----cccc---ccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3344445556777777777651 0 2222 2244456667777999999999999999999888887765 1
Q ss_pred -cc-----hHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccCCccc
Q 011424 132 -SV-----NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLF 204 (486)
Q Consensus 132 -a~-----~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~~~~ 204 (486)
.+ +...+...............+. ..+.+|.+|.+.|+++.++......++..+++.+...+.+ ..
T Consensus 340 ~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~-------~~ 412 (451)
T PF00083_consen 340 GVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFN-------NL 412 (451)
T ss_pred ccccccccccccceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccc-------cc
Confidence 11 1222222222111112123344 6888999999999999999998888888888888777765 22
Q ss_pred ccccccccCCChhhHHHHHHHHHHHHHHHHhcCCcccCC
Q 011424 205 SSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRH 243 (486)
Q Consensus 205 gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 243 (486)
+ .+.......++..+..++..+++||++.+.
T Consensus 413 ~--------~~~~~~i~~~~~~i~~i~~~~~lpET~g~~ 443 (451)
T PF00083_consen 413 G--------GWGVFLIFAGVCLIAIIFVYFFLPETKGKT 443 (451)
T ss_pred c--------ccccchhhHHHHHHHHhheeEEEeeCCCCC
Confidence 2 011112333334444456678899987654
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.1e-06 Score=77.96 Aligned_cols=147 Identities=16% Similarity=0.127 Sum_probs=117.5
Q ss_pred hhHHHHHHHHHHHhhhhhhhhcccHHHHHHH-hcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHH
Q 011424 40 ITELFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG 118 (486)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~ 118 (486)
.+.+..-.++.|+..-........++.+.+| .|.++.+ .+...+.+..+..+|.++.-++..|+...|.+.+.
T Consensus 235 ~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~------aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~ 308 (422)
T COG0738 235 NKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQ------AAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFY 308 (422)
T ss_pred ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 3445555666666666677777888887777 6778877 88899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcc
Q 011424 119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (486)
Q Consensus 119 ~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~ 195 (486)
.++..+..+..+++++...+ .+-++.|+..+...|. .+...+..| +.....|..-.+..+|.++-|.+.|++.|
T Consensus 309 a~~~ill~~~~~l~~g~v~~-~~l~~ig~F~simfPTIfslal~~l~--~~ts~~s~~l~maivGGAiiP~l~G~i~d 383 (422)
T COG0738 309 ALIAILLLLAVALIGGVVAL-YALFLIGLFNSIMFPTIFSLALKNLG--EHTSVGSGLLVMAIVGGAIIPPLQGVIAD 383 (422)
T ss_pred HHHHHHHHHHHHHhcChHHH-HHHHHHHHHhHHHHHHHHHHHHhccC--ccccccceeeeeheecchHHHHHHHHHHH
Confidence 98888888888888885554 4456788888888885 888888888 33444555556778999999999999999
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.2e-07 Score=62.31 Aligned_cols=72 Identities=22% Similarity=0.524 Sum_probs=62.4
Q ss_pred HHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHH
Q 011424 45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV 122 (486)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~ 122 (486)
.+-...++.....+...|.+|.+.++.|.+..+ +|.+.++..+...++.+++|.++||+++++.++....++
T Consensus 4 ~lk~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~------iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 4 PLKAFYFFYFAALGCLYPFLPLYLKQLGLSPSQ------IGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHhhhhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 344556677778888999999999999999999 999999999999999999999999999998877665443
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.3e-06 Score=74.70 Aligned_cols=363 Identities=14% Similarity=0.028 Sum_probs=188.2
Q ss_pred HHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhccchhhHHHHHhhhccchhhh
Q 011424 90 SFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQA 169 (486)
Q Consensus 90 ~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~ 169 (486)
...-.+.+.-.+.=.+.|..-.|++++.-.+.....-.+..+.++.+.+=+.-++.|...+.-..-++++-+..+++++.
T Consensus 50 vwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAaEIAYysYIYs~Vd~~~Yq 129 (433)
T KOG3810|consen 50 VWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAAEIAYYSYIYSKVDPEMYK 129 (433)
T ss_pred chhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHHHHhhhheeeeecCHHHHH
Confidence 33344455555666789999999999988877778888888899999998888888886555444488898999999999
Q ss_pred hHhhHHHHHhhhhHHHHhhhhhhhcccCccCCcccccccccccCCChhhHHHHHHHHHHHHHHHHhcCCcccCCCCCCCc
Q 011424 170 LGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDS 249 (486)
Q Consensus 170 ~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 249 (486)
++.+...++.-.|...|..++..+.... ...+.....+......+..+..+++|..++..-.+.++
T Consensus 130 rvt~y~RaA~L~g~~~g~vlaQlLvs~~--------------~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~~ 195 (433)
T KOG3810|consen 130 RVTGYCRAAFLVGKFVGSVLAQLLVSLE--------------TLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRLE 195 (433)
T ss_pred HHHHHhHHHHHHHhHHHhHHHHHHhhhc--------------ccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhccc
Confidence 9999999999999999999998888621 22333333444444444556667777665332111111
Q ss_pred ccchhhhccccccchh--h----hcccCCCcccccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccc
Q 011424 250 CDVSYDALESASAEVK--E----EEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQ 323 (486)
Q Consensus 250 ~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 323 (486)
.+....+.++...+.+ + ....-..+..+..+||.+..-.+-..+..+......++... +..... -+-...
T Consensus 196 ~~~~v~~~e~~~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~-LW~~~~---~~~~~v 271 (433)
T KOG3810|consen 196 DKISVGDLEEMNPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQI-LWKEVA---PNPANV 271 (433)
T ss_pred ccceeccchhcCccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHH-HHHhhC---CCchhh
Confidence 1111111111111100 0 00011123344556666654444444433333333222211 111110 011222
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhh
Q 011424 324 MVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITG 403 (486)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (486)
.-|..-.+..+.+.++.+ ..+.+.-...|+.-..++.....-+.. +.++.... ..| +..+..++.........+.
T Consensus 272 yNG~veAv~tlLGa~~~~-~~g~l~i~w~r~g~~ll~~~s~~~agl-lf~m~~t~--~Iw-~~Ya~yvlfr~~y~l~iti 346 (433)
T KOG3810|consen 272 YNGAVEAVSTLLGAIAAL-AAGYLNINWNRWGDLLLAVGSAVQAGL-LFIMAQTQ--HIW-VCYAGYVLFRVIYQLTITI 346 (433)
T ss_pred hcCHHHHHHHHHHHHHHH-HHHheeeccchhhHHHHHHHHHHhhhh-hhhhhccc--cee-hhhhhHHHHHhhHhhhhhH
Confidence 234444555556666666 444444333444333333222111111 11222111 122 2233333332233333444
Q ss_pred hhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhcCC-CCCCchhHHHHHHHHHHHHHHHHhhc
Q 011424 404 LFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDA-SFLPGSQMVFFVLNVVEAIGVLMTFK 478 (486)
Q Consensus 404 ~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~-~~~~g~~~~f~~~~~~~~~~~~~~~~ 478 (486)
....+++....+.-|...|+...+.-+-..+-..+. .|..+-.... ....-|..-|.+.+++.+++....+.
T Consensus 347 A~~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT~iV---vd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~~~ 419 (433)
T KOG3810|consen 347 ATFQIARNLSSELFGLVFGINTFVALILQSILTLIV---VDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIEYL 419 (433)
T ss_pred HHHHHHHhhhhhhheeeeehHHHHHHHHHHhheEEE---EcccccCCCcceeEEEEeehHHHHHHHHHHHHHHHHH
Confidence 444455557778889999988766554444333322 2321111110 00112445567777777777655444
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=5e-06 Score=82.76 Aligned_cols=145 Identities=17% Similarity=0.123 Sum_probs=116.5
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhh
Q 011424 318 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLS 397 (486)
Q Consensus 318 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (486)
...+.....+..+...++..+|.+ +.+.++|++|||+++..+..+..++.....+..+.. ...+.=++.+++.
T Consensus 113 ~c~~~~~~~~~~s~~~~G~~vG~~-i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~------~~~~~Rfl~G~~~ 185 (521)
T KOG0255|consen 113 VCDSSTLVALGQSLFFLGVLVGSL-IFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYW------MFLIFRFLSGFFG 185 (521)
T ss_pred eeCcHhHHHHHHHHHHHHHHHHHh-hheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHH------HHHHHHHHHHhhc
Confidence 556777788888898999999988 556666669999999999998888876666654333 5566667778888
Q ss_pred hhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhh
Q 011424 398 VSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTF 477 (486)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~ 477 (486)
.+.......+..|.++++.|+.+..+ ......++.+++...+++.+ +|++.+++.....++..++.+
T Consensus 186 ~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~------------~Wr~~~~~~~~~~~~~~~~~~ 252 (521)
T KOG0255|consen 186 SGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR------------DWRWLFWIISIPSGLFLLLWF 252 (521)
T ss_pred cchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh------------hHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999 88889999999999988876 388888888888877776633
Q ss_pred ccccccC
Q 011424 478 KPFLAQR 484 (486)
Q Consensus 478 ~~~~~~~ 484 (486)
+ .+|.
T Consensus 253 l--~~Es 257 (521)
T KOG0255|consen 253 L--PPES 257 (521)
T ss_pred c--cCcC
Confidence 3 4454
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00033 Score=69.12 Aligned_cols=159 Identities=13% Similarity=0.071 Sum_probs=112.9
Q ss_pred ChhHHHHHHHHHHHhhhhh-hhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhc-CCchhhh
Q 011424 39 PITELFSIWIIVLCTALPI-SSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-GRKPVII 116 (486)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~-Grr~~l~ 116 (486)
.|+....+.....+.-+.. +...+.+.++.++++.+... +.-..+.+.-......+.++.++|.| ||-+++.
T Consensus 35 ~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~------aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~ 108 (571)
T KOG1237|consen 35 GWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGG------AANNVNAFGGTQFLLPLLGAFLADSFLGRYFTIN 108 (571)
T ss_pred hhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHH------HHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3444443333333333333 44567778888999988877 77788888888888889999999976 8999999
Q ss_pred HHHHHHHHHHHHHhccch-------------------------HHHHHHHHHHHHhhccchhhH-HHHHhhhcc---c-h
Q 011424 117 MGTASVVIFNTLFGLSVN-------------------------FWMAVLTRFLLGSLNGLLGPI-KAYACEIFR---E-E 166 (486)
Q Consensus 117 ~~~~~~~~~~~~~~~a~~-------------------------~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~---~-~ 166 (486)
++.++..++.++..++.. ...++.+.-+..+|.|..-|+ .++-+|.++ + +
T Consensus 109 ~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~ 188 (571)
T KOG1237|consen 109 IGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVE 188 (571)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcch
Confidence 999888888654433211 124555566677788888886 888888888 3 2
Q ss_pred hh--hhHhhHHHHHhhhhHHHHhhhhhhhcccCccCCccccccccc
Q 011424 167 HQ--ALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLF 210 (486)
Q Consensus 167 ~r--~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~~~~gw~~~~ 210 (486)
++ ...+.++....++|..++..+-.++-+ ..||...|
T Consensus 189 ~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~-------~~~w~lgf 227 (571)
T KOG1237|consen 189 VKGIPSFFNWFYFSQNGGALLAQTVLVYIQD-------NVGWKLGF 227 (571)
T ss_pred hhCcccchhHHHHHHHHHHHHHHHHHHhhhh-------cccceeec
Confidence 22 367888999999999999888877766 56665544
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=3e-05 Score=74.31 Aligned_cols=124 Identities=20% Similarity=0.281 Sum_probs=108.2
Q ss_pred HHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhh-hhhhhcCCchhhhHHHHHHHHHHHHHhccchHHHHHHHHHH
Q 011424 66 FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWG-LVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFL 144 (486)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G-~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l 144 (486)
++...++.++.+ .+...+.......+++++.. .+...+|-|++...|++.-.+..+..+++++.|+++....+
T Consensus 267 yl~~~f~w~~~~------~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~ 340 (463)
T KOG2816|consen 267 YLKAKFGWNKKE------FSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVV 340 (463)
T ss_pred EEeeecCcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHH
Confidence 445678999988 88888888888888888777 77888899999999999999999999999999999999988
Q ss_pred HHhhccchhhHHHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcc
Q 011424 145 LGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (486)
Q Consensus 145 ~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~ 195 (486)
.++.........+.++.+..++++|+++++.+....+..+++|.+-+.+..
T Consensus 341 ~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~ 391 (463)
T KOG2816|consen 341 VALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFA 391 (463)
T ss_pred HHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence 888655554459999999999999999999999999999999999887754
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0033 Score=60.86 Aligned_cols=112 Identities=15% Similarity=0.202 Sum_probs=76.6
Q ss_pred hHHHHHHHHH-HHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHhcc---------c--------------------
Q 011424 84 AGYVGSSFMF-GRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS---------V-------------------- 133 (486)
Q Consensus 84 ~g~~~s~~~~-~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a---------~-------------------- 133 (486)
+..+=....+ ...+......+++||++|.+++-+....+.....++++. +
T Consensus 60 I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~ 139 (491)
T PF03219_consen 60 IPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIA 139 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHH
Confidence 4444443333 345667789999999999999887776666665555541 1
Q ss_pred --hHHHHHHHHHHHHhhccchhh-H-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcc
Q 011424 134 --NFWMAVLTRFLLGSLNGLLGP-I-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (486)
Q Consensus 134 --~~~~l~~~r~l~G~~~g~~~~-~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~ 195 (486)
+.|.+.+..++.-+-...... . ..+..|.++.+|-.+..+++..+.++|.++++.+...+.+
T Consensus 140 ~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 140 MFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112333333333333333333 4 7788999999999999999999999999999988888876
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00019 Score=62.62 Aligned_cols=128 Identities=18% Similarity=0.037 Sum_probs=86.0
Q ss_pred ccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHH
Q 011424 314 KLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGF-GLAFLLNCASVV 392 (486)
Q Consensus 314 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 392 (486)
..+.+|+|.++...+.....++..++ + ..+.+.|+.+++..+.++......+...+.......-. .....+.+..++
T Consensus 28 Lk~~l~~sq~~l~~l~~~~~~G~~~G-~-~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l 105 (250)
T PF06813_consen 28 LKSRLGYSQSQLNTLSTAGDIGSYFG-I-LAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFL 105 (250)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHhhcc-H-HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHH
Confidence 33458999999999999988888775 4 56777788899999999999988888776554332211 112222222222
Q ss_pred HhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHH
Q 011424 393 KNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFS 444 (486)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 444 (486)
.+...............+.+| ++||++.|+.-....+++++-..+...+++
T Consensus 106 ~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~ 156 (250)
T PF06813_consen 106 GGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFG 156 (250)
T ss_pred HcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcC
Confidence 222222233333344446687 689999999999999888877776655554
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0029 Score=57.49 Aligned_cols=146 Identities=12% Similarity=0.054 Sum_probs=86.4
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhh
Q 011424 318 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLS 397 (486)
Q Consensus 318 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (486)
+|++..+++.++....+.+.+.+. ..+.+.||+|||+..+..+++-.+..+.-.. .....+++.-++.+...
T Consensus 64 yg~~~~qIa~Lf~~Gf~Ss~i~g~-~~G~laD~~Grk~~cl~~cily~~scl~k~~-------~~~~~L~~GRvlgGiaT 135 (354)
T PF05631_consen 64 YGFSEHQIAILFVAGFASSAIFGT-FVGSLADRYGRKKACLLFCILYSLSCLTKHS-------SNYPVLLLGRVLGGIAT 135 (354)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCchHHHHHHHHHHHHHHHHHhc-------cccHHHHHHHHHHHHHH
Confidence 799999999999988888888888 4555666679999988887777666653211 22224444445555555
Q ss_pred hhhhhhhhh-hhhhc----cccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHH
Q 011424 398 VSIITGLFI-LQNRA----VDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIG 472 (486)
Q Consensus 398 ~~~~~~~~~-~~~~~----~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~ 472 (486)
.......=+ ++.|. +|++..+...+.... +++.+.....|.+.+...+..+ .|...+|.....+.+++
T Consensus 136 SLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf---~~n~~vAI~aGv~a~~l~~~~~----~g~vaPF~~a~~~l~~~ 208 (354)
T PF05631_consen 136 SLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATF---FGNGVVAIGAGVVANVLADWFG----FGPVAPFDAAIVLLAVA 208 (354)
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH---HHhHHHHHHHhHHHHHHHHHhC----CCCcchHHHHHHHHHHH
Confidence 555554322 33332 344444444444332 2333333334444433322211 14577888888888888
Q ss_pred HHHhhc
Q 011424 473 VLMTFK 478 (486)
Q Consensus 473 ~~~~~~ 478 (486)
.++...
T Consensus 209 ~~~I~~ 214 (354)
T PF05631_consen 209 AVLILK 214 (354)
T ss_pred HHHHHh
Confidence 777665
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.017 Score=54.63 Aligned_cols=149 Identities=11% Similarity=0.205 Sum_probs=99.5
Q ss_pred hhHHHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHH-HHHHhhhhhhhhhhhcCCchhhhHH
Q 011424 40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMF-GRALTSVFWGLVADRYGRKPVIIMG 118 (486)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~-~~~i~~~~~G~l~dr~Grr~~l~~~ 118 (486)
+++++.+.+..++..+..+. +-.+.+.+..+....+ .+.++=+..-+ +..+..++.+++.+++.|.+++-+-
T Consensus 26 ~~kflpl~Ll~f~I~~ny~~----lR~lKDslvv~~~gae---~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~ 98 (509)
T COG3202 26 LKKFLPLALLFFCILFNYNL----LRSLKDSLVVTRQGAE---SISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYII 98 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHhhhheEeecCcch---hhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 34455555555555554443 3344555544422100 06667676666 6678889999999999999999888
Q ss_pred HHHHHHHHHHHhcc---------ch-----------------------HHHHHHHHHHHHhhccchhh-H-HHHHhhhcc
Q 011424 119 TASVVIFNTLFGLS---------VN-----------------------FWMAVLTRFLLGSLNGLLGP-I-KAYACEIFR 164 (486)
Q Consensus 119 ~~~~~~~~~~~~~a---------~~-----------------------~~~l~~~r~l~G~~~g~~~~-~-~~~i~~~~~ 164 (486)
+..+....+++++. ++ .|...+..++.=+-...... . .....|.+.
T Consensus 99 ~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt 178 (509)
T COG3202 99 LGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITT 178 (509)
T ss_pred HHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 77777777776652 11 13333333333333333333 4 677889999
Q ss_pred chhhhhHhhHHHHHhhhhHHHHhhhhhhhcc
Q 011424 165 EEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (486)
Q Consensus 165 ~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~ 195 (486)
.+|-.|..++++.+.+++..++..+..++..
T Consensus 179 ~~eakRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 179 IEEAKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999888876
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0023 Score=59.28 Aligned_cols=122 Identities=14% Similarity=0.159 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHH
Q 011424 43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV 122 (486)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~ 122 (486)
.+..++.........++.....+++.+++..+..+. ...........+...+....--++.-|. |+++.....+..
T Consensus 20 ~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~~~---~F~~~~~~~a~i~~ll~~~~n~~~~~~~-~~~~~~~l~~~~ 95 (406)
T KOG1479|consen 20 YLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHNSK---NFTSSYTLAAQIPLLLFNLLNAFLNTRL-RTRVGYLLSLIA 95 (406)
T ss_pred HHHHHHHhcccccchHhhhccHHHHHhhcCCCchHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 444555555566677888888899888875544321 1123333333444455555555555562 222222112222
Q ss_pred HHHHHHHhc---------cchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhh
Q 011424 123 VIFNTLFGL---------SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQA 169 (486)
Q Consensus 123 ~~~~~~~~~---------a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~ 169 (486)
.+..+.+.+ ...+...++.-.+.+.+.|...-. ....+ .+|+|.-.
T Consensus 96 il~i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~-~~P~~ytq 151 (406)
T KOG1479|consen 96 ILFIVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAG-LFPSEYTQ 151 (406)
T ss_pred HHHHHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhh-cCCHHHHH
Confidence 222222222 135666666667777777776654 55544 45655433
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0039 Score=59.85 Aligned_cols=52 Identities=15% Similarity=0.036 Sum_probs=37.7
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhh
Q 011424 387 NCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAG 438 (486)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~ 438 (486)
.+..++.+...+-.......+..+.+++++|..+..++.....+|-.+|..+
T Consensus 376 ~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 376 IILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVL 427 (437)
T ss_pred HHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555556666677777888888999888888888888887777664
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00085 Score=67.63 Aligned_cols=169 Identities=9% Similarity=-0.054 Sum_probs=110.0
Q ss_pred hHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhh--
Q 011424 302 SEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSG-- 379 (486)
Q Consensus 302 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 379 (486)
...+..|+... +|++...+..+........-+...+.+...|+++|+++.+.++.++..++..++.+......
T Consensus 7 ~aiLvlYl~~~-----lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~ 81 (654)
T TIGR00926 7 RTILVLYFLNF-----LGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGH 81 (654)
T ss_pred HHHHHHHHHHH-----cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCccccc
Confidence 33444554433 67777777776666655555565657777788899999999998888887766655322111
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccC---chhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCCCCC
Q 011424 380 FGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQD---QRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLP 456 (486)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 456 (486)
.......++...++..+.++.-|...+...+.++++ .+-+...+.....++|+.+++.+.+++.+....... ..
T Consensus 82 ~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~---~~ 158 (654)
T TIGR00926 82 PLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGC---QD 158 (654)
T ss_pred chHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc---Cc
Confidence 111122333344455566666777777777777643 467788888888999999999999888654311000 01
Q ss_pred chhHHHHHHHHHHHHHHHHhhc
Q 011424 457 GSQMVFFVLNVVEAIGVLMTFK 478 (486)
Q Consensus 457 g~~~~f~~~~~~~~~~~~~~~~ 478 (486)
+|...|.+.+++++++.+....
T Consensus 159 ~~~~aF~i~~i~m~ia~lvf~~ 180 (654)
T TIGR00926 159 CYPLAFGVPAILMILALIVFMA 180 (654)
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 6888998888888887766543
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00042 Score=65.71 Aligned_cols=106 Identities=16% Similarity=0.235 Sum_probs=79.8
Q ss_pred hhhhHHHHHHHHHHHHHhcc---c------hHHHHHHHHHHHHhhccchhhH-HHHHhhhccch---hhhhHhhHHHHHh
Q 011424 113 PVIIMGTASVVIFNTLFGLS---V------NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREE---HQALGLSTVSTAW 179 (486)
Q Consensus 113 ~~l~~~~~~~~~~~~~~~~a---~------~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~---~r~~~~~~~~~~~ 179 (486)
|+++++.++..+|.++..++ + +.+.++++-.+.++|.|..-|. .++.+|.++++ +|...+.++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 56778888888888874442 2 2367889999999999999886 99999999865 5778889999999
Q ss_pred hhhHHHHhhhhhhhcccCccCCcccccccccccCCChhhHHHHHHHHHHHHHHHH
Q 011424 180 GIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAF 234 (486)
Q Consensus 180 ~~g~~ig~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (486)
++|..+++.+.+++.+ +++|...+.+..+..+++++...
T Consensus 82 n~G~~~~~~~~~~i~~----------------~~~~~~~f~i~~~~~~~~~~~f~ 120 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQ----------------NYGWFLGFGIPAIGMLLALIVFL 120 (372)
T ss_dssp HHHHHHHHHCCCHHHH----------------CS-HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhcccchhhcc----------------ccchhhhhhHHHHHHHHHHHHHH
Confidence 9999999999999987 45555555666655555544443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00062 Score=64.81 Aligned_cols=163 Identities=14% Similarity=0.077 Sum_probs=111.2
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhh
Q 011424 318 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLS 397 (486)
Q Consensus 318 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (486)
.+.+.+..|++.+...++..+.++..+.|-.|+..-|+.+..+..++.++.+++......... +..+.+.+=+....+
T Consensus 66 ~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~--~~y~mL~~R~l~Gvg 143 (488)
T KOG2325|consen 66 PTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNG--VKYLMLVARILTGVG 143 (488)
T ss_pred CCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccc--hHHHHHHHHHHcCcC
Confidence 567788899999999999999999777776666444777788888888888888555544322 222223333333344
Q ss_pred hhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhh---cCCCCCCchhHHHHHHHHHHHHHHH
Q 011424 398 VSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKR---LDASFLPGSQMVFFVLNVVEAIGVL 474 (486)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~---~~~~~~~g~~~~f~~~~~~~~~~~~ 474 (486)
.+.......+++...-.++|.++++..+....+|.++||.+...+.....+. .+...+.-|..+-++.+++.++..+
T Consensus 144 ~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v 223 (488)
T KOG2325|consen 144 VGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIV 223 (488)
T ss_pred cccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHH
Confidence 4556677888888777899999999988888888888888765554432111 1112223466777788888888777
Q ss_pred Hhhcccccc
Q 011424 475 MTFKPFLAQ 483 (486)
Q Consensus 475 ~~~~~~~~~ 483 (486)
+.+. ..+|
T Consensus 224 ~i~~-~f~E 231 (488)
T KOG2325|consen 224 IILF-FFKE 231 (488)
T ss_pred HHHh-heee
Confidence 7666 4554
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0017 Score=55.89 Aligned_cols=242 Identities=11% Similarity=-0.019 Sum_probs=107.4
Q ss_pred hhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccCCcccccccccccCCChhhHHHHHHHHHHHHHHHHhcCCcccCCCC
Q 011424 166 EHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHND 245 (486)
Q Consensus 166 ~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 245 (486)
|+|+........+.++|.++.-..- +.+.. -+..- +..|+..+.+.+++.++-+++..++ +++-+...
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF--~~~~~--------~~~~~-~~~W~~I~si~~lL~~IpLIly~if-Gk~fd~~~ 69 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPF--LISSS--------VVIAL-TNNWQWILSIFILLIFIPLILYIIF-GKNFDIYS 69 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhH--Hhcch--------HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh-cccccccC
Confidence 4566666677777888877654432 22100 00001 3446666566666555555555444 22211111
Q ss_pred CC--CcccchhhhccccccchhhhcccCCCcccccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCcccc---
Q 011424 246 DD--DSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNY--- 320 (486)
Q Consensus 246 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--- 320 (486)
++ +++.. .+.+++...++.+|++..|...+.+...-.....- ..+.+..........+.
T Consensus 70 ~~~k~~k~~--------------~~~~~~~s~~~~LK~K~tw~w~~~Yg~wLv~~V~p--~t~~~~~~~~~~s~~ni~~~ 133 (267)
T PF07672_consen 70 PKEKQEKEN--------------STLSKKPSYKSILKEKETWKWILIYGIWLVVVVFP--FTPSWFNILIWISPANIKSV 133 (267)
T ss_pred ccccccccc--------------ccccccchHHHHHccchHHHHHHHHHHHheeEEEe--ccchhHhHhhhcCccccccc
Confidence 11 10000 02223467788999999888777776654332211 01111110000000111
Q ss_pred -ccch---hHHHHHHHHHHHH-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH---hhhhhhHHHHHHHHHHH
Q 011424 321 -STQM---VGEVLAITGFSLL-VFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIA---MLSGFGLAFLLNCASVV 392 (486)
Q Consensus 321 -~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 392 (486)
+... ..-...+..+++. ++...++.+-....+||+.+.....+.++..++..... ...+........+..++
T Consensus 134 ~~~~~~~~~~~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl 213 (267)
T PF07672_consen 134 VSGGGFNWIIPIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFL 213 (267)
T ss_pred ccccccchhhHHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence 1111 1112223333333 44343444433345566655533222222222211111 11111123345566667
Q ss_pred Hhhhhhhhhhhhhhhhhhc--cccCchhhHHhHHHHHHHHHHHHH
Q 011424 393 KNLLSVSIITGLFILQNRA--VDQDQRGAANGIAMTGMSLFKAAG 435 (486)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~g~~~~~~~~g~~~~ 435 (486)
.+.+.-+..+.......|. .+|++-|...|+.-.++++.-.+.
T Consensus 214 ~G~f~WgiQ~ViL~lPhEyK~~~pk~ig~~Fg~iWGfGY~~yTi~ 258 (267)
T PF07672_consen 214 AGFFLWGIQGVILNLPHEYKGYNPKKIGIQFGLIWGFGYIFYTIY 258 (267)
T ss_pred HHHHHHhhhHHHhcChhhhcCCCcceehhHHHHHHHHHHHHHHHH
Confidence 7777777777766666663 245666666666555555444333
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00063 Score=59.56 Aligned_cols=108 Identities=15% Similarity=0.019 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhccchhhHHHHHhhhc
Q 011424 84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIF 163 (486)
Q Consensus 84 ~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~i~~~~ 163 (486)
.|.+.-+-.+...+..+.+....||+---.=..+..++.+.+.++.+++++.++=+++-.+..++.|..-...--.+..+
T Consensus 64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~Y 143 (409)
T KOG3880|consen 64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSRY 143 (409)
T ss_pred cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhccC
Confidence 45566666677777788888889987544334556677788888999999999998888888888877655433333334
Q ss_pred cchhhhhHhhHHHHHhhhhHHHHhhhhhhhcc
Q 011424 164 REEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (486)
Q Consensus 164 ~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~ 195 (486)
++. ..+.++.+.+.++.+|..--..+.+
T Consensus 144 ~~~----~i~~WSSGTGgAGliGa~SYa~lT~ 171 (409)
T KOG3880|consen 144 PSI----VIAGWSSGTGGAGLIGASSYAFLTS 171 (409)
T ss_pred CCc----eeccccCCCCcchhhhhhHHHHHhh
Confidence 332 3444555556666666554444443
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.001 Score=61.89 Aligned_cols=127 Identities=13% Similarity=-0.064 Sum_probs=78.4
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHH-HHHHHHHHHhh
Q 011424 318 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLS-GFGLAF-LLNCASVVKNL 395 (486)
Q Consensus 318 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~ 395 (486)
+| +...+-+...++.+..++..+ .+-|+.|++|-|...+++.....++..+=....... +...+- +......+.+.
T Consensus 75 Yg-s~~~~~wlsmIym~v~vp~gf-~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~ 152 (480)
T KOG2563|consen 75 YG-SSSAADWLSMIYMVVSVPFGF-AAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAA 152 (480)
T ss_pred hc-chHHHHHHHHHHHHHHHHHhh-HHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHH
Confidence 56 666677888888888888887 444555556999999998888877765543332221 111221 11122222211
Q ss_pred hhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHHH
Q 011424 396 LSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWA 446 (486)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 446 (486)
..........-+...-+|+++|+++..+..+...+|.+++..+...+....
T Consensus 153 Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~ 203 (480)
T KOG2563|consen 153 AQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSS 203 (480)
T ss_pred hhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence 111111111122333479999999999999999999999988887777655
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.017 Score=51.45 Aligned_cols=98 Identities=12% Similarity=0.161 Sum_probs=63.9
Q ss_pred HHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccc--hhh--
Q 011424 94 GRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFRE--EHQ-- 168 (486)
Q Consensus 94 ~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~--~~r-- 168 (486)
..+....+.+.+..++|.|+++.++...+...-.. =+=+.+..++-.-...|++.+..+.. -+|+++.-.. ++|
T Consensus 70 ~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~-Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~~~~ 148 (390)
T KOG3097|consen 70 SLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAA-NLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQRGE 148 (390)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh-hcchhHHhhccHHHhhccccccccccCcceecHHHHHHHHhhhh
Confidence 33445555558999999999999887777554322 23467889999999999999988776 6666655432 334
Q ss_pred -------hhHhhHHHHHhhhhHHHHhhhhhh
Q 011424 169 -------ALGLSTVSTAWGIGLIIGPALGGF 192 (486)
Q Consensus 169 -------~~~~~~~~~~~~~g~~ig~~l~~~ 192 (486)
.+..+.+...+.-+...|..++..
T Consensus 149 q~~~~~~~~ffg~Ffii~~~~qv~gn~issl 179 (390)
T KOG3097|consen 149 QAGDGMKVRFFGEFFIIFQCAQVWGNLISSL 179 (390)
T ss_pred hccCceeeeehhHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555444433
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.20 E-value=7.4e-05 Score=73.57 Aligned_cols=164 Identities=14% Similarity=0.030 Sum_probs=2.5
Q ss_pred ccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhh--------------
Q 011424 314 KLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSG-------------- 379 (486)
Q Consensus 314 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 379 (486)
+++.+++++.++|++.+..-++.++..+++..+-+ |..|.+.+..+.++..++.+++.+-+...+
T Consensus 29 iErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~-~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~ 107 (539)
T PF03137_consen 29 IERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGG-RGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNS 107 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccccc
Confidence 45669999999999999999999999886665544 445666667777777776666544321110
Q ss_pred ------------------------------hhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHH
Q 011424 380 ------------------------------FGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMS 429 (486)
Q Consensus 380 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 429 (486)
......+++..++.|.+....++.-.+++-|.++++..+...|+..+...
T Consensus 108 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~ 187 (539)
T PF03137_consen 108 SISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSI 187 (539)
T ss_dssp --------------------------------------------SSS---------------------------------
T ss_pred ccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhh
Confidence 01224455666777888888899999999999999999999999999999
Q ss_pred HHHHHHhhhHHHHHHHHhhhc------------CCCCCCchhHHHHHHHHHHHHHHHHhhc
Q 011424 430 LFKAAGPAGGGALFSWAQKRL------------DASFLPGSQMVFFVLNVVEAIGVLMTFK 478 (486)
Q Consensus 430 ~g~~~~~~~~g~l~~~~~~~~------------~~~~~~g~~~~f~~~~~~~~~~~~~~~~ 478 (486)
+|-++|-.+++...+...+.. ++.+.+.|...|++.+.+.++..+..+.
T Consensus 188 lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~ 248 (539)
T PF03137_consen 188 LGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFF 248 (539)
T ss_dssp -------------------------------------------------------------
T ss_pred ccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999888888876543321 2334556778888888777777665554
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0086 Score=56.01 Aligned_cols=108 Identities=18% Similarity=0.273 Sum_probs=75.4
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHH--HHH---HHHHhccchHHHHHHHHHHHHhhccchhh-HHH
Q 011424 84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV--VIF---NTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKA 157 (486)
Q Consensus 84 ~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~--~~~---~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~ 157 (486)
..+....|.+|-.++.--...+ |+ |++.+.+.+-. .+. ....-+.++.|..++.-+..|+..|...+ ...
T Consensus 283 Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~ 358 (402)
T PF02487_consen 283 YRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFY 358 (402)
T ss_pred HHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 6677777777766654322211 33 44444333222 222 22333468899999999999998777766 577
Q ss_pred HHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcc
Q 011424 158 YACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (486)
Q Consensus 158 ~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~ 195 (486)
.+.|..++++|-.++|..+.+-++|..++..++-++-.
T Consensus 359 ~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le~ 396 (402)
T PF02487_consen 359 RISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLEP 396 (402)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 88888899999999999999999999999998876643
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0014 Score=63.15 Aligned_cols=150 Identities=16% Similarity=0.192 Sum_probs=103.0
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHhcc----------chHHHHHHHHHHHHhhccc-h
Q 011424 84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS----------VNFWMAVLTRFLLGSLNGL-L 152 (486)
Q Consensus 84 ~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a----------~~~~~l~~~r~l~G~~~g~-~ 152 (486)
.|.+..+..++..++..+.....-+..-|+++..+.++.++..+....- ++.+-.+.--++..+..+. .
T Consensus 257 ~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~~i~~ 336 (433)
T PF03092_consen 257 YGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVIGMIAF 336 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHHHHHHH
Confidence 7778888888888888888888888888899888888777766543321 1222222333445554444 4
Q ss_pred hhHHHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccCCcccccc-cccccCCChhhHHHHHHHHHHHHH
Q 011424 153 GPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSE-SLFGKFPYFLPCLCISLFAFGVTI 231 (486)
Q Consensus 153 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~~~~gw~-~~~~~~~~~~~~~~~~~~~~~~~~ 231 (486)
.|...+++|.+|+..-|...++..+..++|..++..++..+.+ .++.. ..| .+.+...++..+..++.+.
T Consensus 337 mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~-------~~~vt~~~f--~~l~~lili~~~~~ll~l~ 407 (433)
T PF03092_consen 337 MPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLME-------LFGVTRDDF--SNLWLLILICSVIQLLPLP 407 (433)
T ss_pred HHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HcCCCcccc--cchHHHHHHHHHHHHHHHH
Confidence 5668889999999999999999999999999999999999988 44421 112 2223333444455555555
Q ss_pred HHHhcCCcccC
Q 011424 232 AAFWLPETLHR 242 (486)
Q Consensus 232 ~~~~~~e~~~~ 242 (486)
+..++|++.+.
T Consensus 408 ll~lLp~~~~~ 418 (433)
T PF03092_consen 408 LLFLLPPQKRI 418 (433)
T ss_pred HHHHcCCCchh
Confidence 66677775543
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0036 Score=62.52 Aligned_cols=164 Identities=13% Similarity=-0.004 Sum_probs=122.8
Q ss_pred ccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhh---------------
Q 011424 314 KLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLS--------------- 378 (486)
Q Consensus 314 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 378 (486)
+.+.++++..+.|++...+-++..+...++..+ .-|..|.+.+-++.++..++.++..+-+...
T Consensus 123 iErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYf-G~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~ 201 (735)
T KOG3626|consen 123 IERRFKISSSQSGLIASSYDIGNLLLIIFVSYF-GSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVE 201 (735)
T ss_pred hhhhcCCCCCcceeEeeecccchhhhhHhHHHh-ccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhcccc
Confidence 345589999999999888888888877644444 3444566666777777777666655432110
Q ss_pred -------------------------------hhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHH
Q 011424 379 -------------------------------GFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTG 427 (486)
Q Consensus 379 -------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 427 (486)
....+..+++..++.|.+....++.-.+++-|.+.+++.+...|+..++
T Consensus 202 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~ 281 (735)
T KOG3626|consen 202 NPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSM 281 (735)
T ss_pred CCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHH
Confidence 0114556667777888888888899999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHhhh-c--------CCCCCCchhHHHHHHHHHHHHHHHHhhc
Q 011424 428 MSLFKAAGPAGGGALFSWAQKR-L--------DASFLPGSQMVFFVLNVVEAIGVLMTFK 478 (486)
Q Consensus 428 ~~~g~~~~~~~~g~l~~~~~~~-~--------~~~~~~g~~~~f~~~~~~~~~~~~~~~~ 478 (486)
..+|-++|-.+++.+.+...+. . .+.+.+.|...|++++.+.++..+..++
T Consensus 282 ~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~ 341 (735)
T KOG3626|consen 282 AILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFF 341 (735)
T ss_pred HHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999988876554 1 2345567888899999988888877766
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.058 Score=43.39 Aligned_cols=107 Identities=19% Similarity=0.074 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 011424 329 LAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQ 408 (486)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (486)
.++......+..+ ..+.+.++.|.|+.+.++.+.-.+-.+..... .+..++....+.++.....+...-.++
T Consensus 43 lai~Y~~~~~s~l-~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~-------~~~~l~~~s~l~G~~~a~lW~aqg~yl 114 (156)
T PF05978_consen 43 LAILYGSFAISCL-FAPSIVNKLGPKWSMILGSLGYAIYIASFFYP-------NSYTLYPASALLGFGAALLWTAQGTYL 114 (156)
T ss_pred HHHHHHHHHHHHH-hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHhhhhHHhhHhhhHHH
Confidence 3444444555555 55667788899998888876665444443221 233556666777778888888888888
Q ss_pred hhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHH
Q 011424 409 NRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALF 443 (486)
Q Consensus 409 ~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~ 443 (486)
.+..+++.+++-.++.-.+.+.+.++|..+.-.+.
T Consensus 115 t~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 115 TSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred HHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999998888888877665544
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0077 Score=57.33 Aligned_cols=145 Identities=8% Similarity=-0.096 Sum_probs=101.2
Q ss_pred HHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHH
Q 011424 45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI 124 (486)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~ 124 (486)
...++..+-++..-.....+..+...-|.++.. +|..-+...+....+.....++.+|+|..|.=.++...-..
T Consensus 262 las~alalLY~TVLsf~~lmt~yl~~~G~s~~~------igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~ 335 (432)
T PF06963_consen 262 LASFALALLYFTVLSFGGLMTAYLKSQGYSPSV------IGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWV 335 (432)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHCCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 334444444444444566666777777999998 99999999999999999999999999998887777665443
Q ss_pred HHHHHhc------cc----hHHHHHHHHHHHHhhccchhh-HHHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhh
Q 011424 125 FNTLFGL------SV----NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL 193 (486)
Q Consensus 125 ~~~~~~~------a~----~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l 193 (486)
+..++.. .+ +...++.+-.+.=+|-=.+.. ..-++-|..|+++||...|.-....++-.++...++-.+
T Consensus 336 ~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~ 415 (432)
T PF06963_consen 336 CLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIF 415 (432)
T ss_pred HHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3333322 22 233344444444444222344 488889999999999999999999999888887776544
Q ss_pred cc
Q 011424 194 AQ 195 (486)
Q Consensus 194 ~~ 195 (486)
.+
T Consensus 416 ~~ 417 (432)
T PF06963_consen 416 PR 417 (432)
T ss_pred CC
Confidence 43
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.006 Score=42.41 Aligned_cols=67 Identities=18% Similarity=0.221 Sum_probs=47.7
Q ss_pred HHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 011424 288 IIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG 361 (486)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (486)
-..+++..........+++.|+.+ .|+++.+.|.+.++..+..+++.+ +.+.+.||.++++......
T Consensus 6 k~~yf~~f~~~g~~~Pfl~~~~~~------~Gl~~~~iGil~~i~~~~~~~~~p-l~g~laDk~~~~~~~l~~~ 72 (77)
T PF12832_consen 6 KAFYFFYFAALGCLYPFLPLYLKQ------LGLSPSQIGILSAIRPLIRFLAPP-LWGFLADKFGKRKVILLGS 72 (77)
T ss_pred HHHHHHHHHHHHHHHhhhhHhhhh------cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCccHHHHHHH
Confidence 344455555555565666666554 699999999999999999999999 5566666667766655543
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.15 Score=50.47 Aligned_cols=167 Identities=16% Similarity=0.049 Sum_probs=80.4
Q ss_pred HHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH--
Q 011424 290 VYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPL-- 367 (486)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 367 (486)
..++..+....+.....-.+... +|-+....+.+.+.+-.+..+|+. .++++.++ ..++...+-..+..++
T Consensus 22 ~~f~sg~~~L~yEv~~~r~l~~~-----~G~s~~~~~~ii~~fl~glalGs~-l~~~~~~~-~~~~~~~~e~~i~l~~~~ 94 (521)
T PRK03612 22 AVFVCAACGLVYELLLGTLASYL-----LGDSVTQFSTVIGLMLFAMGVGAL-LSKYLLRD-AAAGFVAVELLLALLGGL 94 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----hCchHHHHHHHHHHHHHHHHHHHH-HHHhhhhh-HHHHHHHHHHHHHHHHHH
Confidence 33344444444444443333322 576777777777777777777766 44444433 1222222211111111
Q ss_pred -HHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHHH
Q 011424 368 -LTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWA 446 (486)
Q Consensus 368 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 446 (486)
..++...... ............+..+++.+...|...-+..+ ...+..+...|-......+|+++|+.+.+++.-..
T Consensus 95 ~~~ll~~~~~~-~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~-~~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~ 172 (521)
T PRK03612 95 SALILYAAFAF-QGLSRLLLYVLVLLIGLLIGMEIPLLMRILQR-IRDQHLGHNVATVLAADYLGALVGGLAFPFLLLPR 172 (521)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHh
Confidence 1111111110 01111112222233344445555554444433 22234567788888999999999999999887632
Q ss_pred hhhcCCCCCCchhHHHHHHHHHHHHHHH
Q 011424 447 QKRLDASFLPGSQMVFFVLNVVEAIGVL 474 (486)
Q Consensus 447 ~~~~~~~~~~g~~~~f~~~~~~~~~~~~ 474 (486)
.|.....++.+.+.++..+
T Consensus 173 ---------lG~~~t~~~~a~l~~~~a~ 191 (521)
T PRK03612 173 ---------LGLIRTAALTGSLNLLAAL 191 (521)
T ss_pred ---------cchHHHHHHHHHHHHHHHH
Confidence 1444454555554444443
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.23 Score=46.85 Aligned_cols=146 Identities=10% Similarity=0.012 Sum_probs=96.8
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhh
Q 011424 318 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLS 397 (486)
Q Consensus 318 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (486)
.|++.++..--.-+...=+-+..++...++.|..|.|++++...+...+...++.+..... .+-+.-++.+...
T Consensus 35 kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~------~mq~~q~~yg~~~ 108 (412)
T PF01770_consen 35 KNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVL------AMQLMQFFYGLAT 108 (412)
T ss_pred cCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHH------HHHHHHHHHHHHH
Confidence 5888888776665655555555566778889999999999888877777777666654322 2333333333332
Q ss_pred hhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhh
Q 011424 398 VSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTF 477 (486)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~ 477 (486)
..-.+.++++-..+|+++--++.+......-+|..++..++-.+...... .+....++......++.+..+
T Consensus 109 -a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~--------sy~~L~~isl~~~~~a~~~~~ 179 (412)
T PF01770_consen 109 -AAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGV--------SYFQLNYISLASVSLALLIAL 179 (412)
T ss_pred -HHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------CHHHHHHHHHHHHHHHHHHHH
Confidence 23445556666668889989999999999999988888888777664311 355565665555555555554
Q ss_pred c
Q 011424 478 K 478 (486)
Q Consensus 478 ~ 478 (486)
+
T Consensus 180 f 180 (412)
T PF01770_consen 180 F 180 (412)
T ss_pred H
Confidence 4
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.57 Score=45.45 Aligned_cols=125 Identities=8% Similarity=0.017 Sum_probs=80.9
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh-------------------
Q 011424 321 STQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFG------------------- 381 (486)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 381 (486)
+.+...++....-+...+.-.....++.+|.+|++.............+++.+...+....
T Consensus 41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~ 120 (472)
T TIGR00769 41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFM 120 (472)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhH
Confidence 4456666666655555554222556667777888887776655555555554442211100
Q ss_pred ------HHHHHHHHHHHHhhhhhhhhh-hhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHH
Q 011424 382 ------LAFLLNCASVVKNLLSVSIIT-GLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSW 445 (486)
Q Consensus 382 ------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 445 (486)
..+...+..+....++....+ ..+..++|...+++..+-.++.....++|..+++.+..++.+.
T Consensus 121 ~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~ 191 (472)
T TIGR00769 121 GFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSKL 191 (472)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 001112333344445555555 7899999999999999999999999999999999998887754
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.098 Score=50.06 Aligned_cols=146 Identities=15% Similarity=0.256 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHhhhhhhhhcccHHHHHH---HhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhh---hcCCchhh
Q 011424 42 ELFSIWIIVLCTALPISSLFPFLYFMIK---DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD---RYGRKPVI 115 (486)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~d---r~Grr~~l 115 (486)
+.+.+....+..++..+......|.-.. ..+.+... +.+.-.-...++..+++.+.+.+++ |+||++++
T Consensus 241 ~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~-----~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~ 315 (461)
T KOG3098|consen 241 KMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTY-----LIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTV 315 (461)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchh-----HHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcch
Confidence 3444555555566655555555553322 22222221 1344444445555666666777765 67999999
Q ss_pred hHHHHHHHHHHHHHhcc------------------chHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHH
Q 011424 116 IMGTASVVIFNTLFGLS------------------VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVS 176 (486)
Q Consensus 116 ~~~~~~~~~~~~~~~~a------------------~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~ 176 (486)
.++..+..++.++.-.. +++....+.-++.|++.+..... +.++.+.. +++|.++.++.-
T Consensus 316 ~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~k 394 (461)
T KOG3098|consen 316 LIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFK 394 (461)
T ss_pred hHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHH
Confidence 99988888877766542 24667778889999998888776 88888888 567888888888
Q ss_pred HHhhhhHHHHhhhhhhh
Q 011424 177 TAWGIGLIIGPALGGFL 193 (486)
Q Consensus 177 ~~~~~g~~ig~~l~~~l 193 (486)
.-..++..++-......
T Consensus 395 fyq~~~s~v~~f~~~~~ 411 (461)
T KOG3098|consen 395 FYQSVASCVAFFFSPYL 411 (461)
T ss_pred HHHHHHHHHHhhhhhhh
Confidence 87777777765554433
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.22 Score=49.21 Aligned_cols=122 Identities=15% Similarity=0.100 Sum_probs=71.6
Q ss_pred HHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHH--H-HHHHHHhccch----H-HH
Q 011424 66 FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV--V-IFNTLFGLSVN----F-WM 137 (486)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~--~-~~~~~~~~a~~----~-~~ 137 (486)
.+..-+|.+..+ .+.+.+++.+|.++|+.+.+++.++--|+.. .+-+.+. + ++..+...+.. + ..
T Consensus 40 ~l~~~~G~s~~~------~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~ 112 (521)
T PRK03612 40 LASYLLGDSVTQ------FSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSALILYAAFAFQGLSRLL 112 (521)
T ss_pred HHHHHhCchHHH------HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456777777 8999999999999999999888744322222 1111111 1 11111111111 1 11
Q ss_pred HHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcc
Q 011424 138 AVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (486)
Q Consensus 138 l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~ 195 (486)
++..-++.++..|...|. ..+..+. ..++-++..|-......+|.++|.++.+++.-
T Consensus 113 ~~~~~~~~~~l~G~~~Pl~~~~~~~~-~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLl 170 (521)
T PRK03612 113 LYVLVLLIGLLIGMEIPLLMRILQRI-RDQHLGHNVATVLAADYLGALVGGLAFPFLLL 170 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-cccchhhhhhhhHhHHhHHHHHHHHHHHHHHH
Confidence 233334566667777775 4444332 22235677888888999999999998887653
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.081 Score=37.24 Aligned_cols=71 Identities=21% Similarity=0.174 Sum_probs=53.4
Q ss_pred hhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 011424 298 DMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIA 375 (486)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (486)
-+.+...+|.... +.++|..+.+++.+.+.++..+|.+ ...++.++.++++.+..+.+...+....+.+..
T Consensus 8 RFayTplLP~M~~------~~~ls~~~ag~lasaNy~GYL~GAl-~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~ 78 (85)
T PF06779_consen 8 RFAYTPLLPLMQA------DGGLSLSQAGWLASANYLGYLVGAL-LASRLPRHSRPRRLLRAGLLLTVLSTAAMALTH 78 (85)
T ss_pred HHHHHhHhHHHHH------hcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555655444 3699999999999999999999998 555666655777888888888777777776654
|
Note that many members are hypothetical proteins. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.76 E-value=1.1 Score=40.62 Aligned_cols=134 Identities=19% Similarity=0.078 Sum_probs=82.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhh
Q 011424 323 QMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIIT 402 (486)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (486)
...++......+...++.+ ..+.+.|+.|||+....+............+... .......+.....+.......+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~-~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~ 113 (338)
T COG0477 39 LLYGLLLSAFFLGYAIGSL-LAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPN----VGLALLLILRLLQGLGGGGLLP 113 (338)
T ss_pred HHHHHHHHHHHHHHHHHhh-hhhhccccccchHHHHHHHHHHHHHHHHHHhCcc----chHHHHHHHHHHHHhhhHHHHH
Confidence 3577777777788877776 5555555558876666655442222222222221 1112222333334455556778
Q ss_pred hhhhhhhhcccc-CchhhHHhHHHH-HHHHHHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHH
Q 011424 403 GLFILQNRAVDQ-DQRGAANGIAMT-GMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVE 469 (486)
Q Consensus 403 ~~~~~~~~~~~~-~~~g~~~g~~~~-~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~ 469 (486)
....+..+..|+ +.|+...+.... ...++..++|.+.+.+... .. .+|+..|.......
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~ 174 (338)
T COG0477 114 VASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA-LL-------WGWRAAFLLAALLG 174 (338)
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-------cchHHHHHHHHHHH
Confidence 888888998887 678888888888 5788888888777777766 11 15666555555444
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.21 Score=48.23 Aligned_cols=109 Identities=13% Similarity=0.037 Sum_probs=74.5
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhcCCc-hhhhHHH---HHHHHHHHHHhcc---------chHHHHHHHHHHHHhhcc
Q 011424 84 AGYVGSSFMFGRALTSVFWGLVADRYGRK-PVIIMGT---ASVVIFNTLFGLS---------VNFWMAVLTRFLLGSLNG 150 (486)
Q Consensus 84 ~g~~~s~~~~~~~i~~~~~G~l~dr~Grr-~~l~~~~---~~~~~~~~~~~~a---------~~~~~l~~~r~l~G~~~g 150 (486)
.-.....+.++-.+|..+..+. ..-++| +.+.+.. +++....++|..- ++-+..++.-++.|+..|
T Consensus 309 ~~i~~~~fNvgD~vGR~~~~~~-~~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnG 387 (437)
T TIGR00939 309 PIICFLLFNLFDWLGRSLTSKF-MWPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNG 387 (437)
T ss_pred HHHHHHHHHHHHHHHhhhhhee-EeeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhh
Confidence 4566778888888888755432 111223 1233322 2333333444322 456677778999999999
Q ss_pred chhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhh
Q 011424 151 LLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL 193 (486)
Q Consensus 151 ~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l 193 (486)
-.... ..+..+..+++||..+-.+...+..+|..+|..++-.+
T Consensus 388 y~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~ 431 (437)
T TIGR00939 388 YLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF 431 (437)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88775 88888889999999999999999999999988876444
|
|
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.27 Score=45.03 Aligned_cols=148 Identities=11% Similarity=-0.021 Sum_probs=83.8
Q ss_pred HHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHH
Q 011424 43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV 122 (486)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~ 122 (486)
.+.+.++.++...+.-+.......++.+++-+.-. .....+++- .....+..++.|...|+..|+|++...+.+-
T Consensus 29 ~i~Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~--lvAvyglve---sgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lq 103 (503)
T KOG2601|consen 29 VIFLYLGYFLTTWGDRMWEFSVSLFMILLGGNSLL--LVAVYGLVE---SGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQ 103 (503)
T ss_pred eehhhHHHHHhHhhHhHHHHHHHHHHHHHcCceeh--hHHHHHHHH---HhHHHhhHHHHHHHhcchhHHHHHHHHHhhc
Confidence 45566777777777766666666667676654322 000122222 2334667778889999999999988776554
Q ss_pred HHHHHHH------hc------cchHHHHHHHHHHHHhhccc--hhh-HHHHH--hhhc----cchhhh---hHhhHHHHH
Q 011424 123 VIFNTLF------GL------SVNFWMAVLTRFLLGSLNGL--LGP-IKAYA--CEIF----REEHQA---LGLSTVSTA 178 (486)
Q Consensus 123 ~~~~~~~------~~------a~~~~~l~~~r~l~G~~~g~--~~~-~~~~i--~~~~----~~~~r~---~~~~~~~~~ 178 (486)
-++.+++ .+ +.+++.+..+-++.-...+. ... +.+++ .||. ..+.+. +..+..-..
T Consensus 104 NlSv~vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~~i~i~RDWvvV~s~g~s~s~lt~mnatir~i 183 (503)
T KOG2601|consen 104 NLSVIVAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAGTILIERDWVVVMSEGESPSVLTNMNATIRGI 183 (503)
T ss_pred cHHHHHHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhheEEecccEEEEecCCCCHHHHhhcchhhhhh
Confidence 3333222 22 13566666665554432222 111 22222 2333 223333 333555556
Q ss_pred hhhhHHHHhhhhhhhcc
Q 011424 179 WGIGLIIGPALGGFLAQ 195 (486)
Q Consensus 179 ~~~g~~ig~~l~~~l~~ 195 (486)
-..-..+.|.+.|.+.+
T Consensus 184 Dq~tn~Lapv~tg~Iit 200 (503)
T KOG2601|consen 184 DQSTNLLAPVITGLIIT 200 (503)
T ss_pred hhhhhchhhhhhcccce
Confidence 66778899999999887
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.14 Score=48.63 Aligned_cols=114 Identities=9% Similarity=-0.021 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh---hHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccC---chhhHHhHHHHHH
Q 011424 355 MVARIAGVLTIPLLTSYPYIAMLSGF---GLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQD---QRGAANGIAMTGM 428 (486)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~g~~~~~~ 428 (486)
+.+.++..+..++.+++.+....... .....+.+...+.+.+.++.=|.......+.++++ +|.+.........
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 34556666666666665554433221 11123334444555667777788888888888654 5677777888899
Q ss_pred HHHHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhc
Q 011424 429 SLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK 478 (486)
Q Consensus 429 ~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~ 478 (486)
++|..+++.+.+++-+.. ||...|.+.++..+++.+..+.
T Consensus 82 n~G~~~~~~~~~~i~~~~----------~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNY----------GWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-----------HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhcccchhhcccc----------chhhhhhHHHHHHHHHHHHHHh
Confidence 999999999999998776 8999999999998888877665
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.018 Score=52.91 Aligned_cols=111 Identities=9% Similarity=0.025 Sum_probs=2.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhh-------hhHHHHHHHHHHHHhhhhhhh
Q 011424 328 VLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSG-------FGLAFLLNCASVVKNLLSVSI 400 (486)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 400 (486)
.+...+++-.+|+. +..+...+..+++.+....+.=.+...++.++...+. ..+....++..++.++..+-.
T Consensus 187 ~fl~Fn~gD~iGR~-l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl 265 (309)
T PF01733_consen 187 LFLLFNLGDFIGRF-LASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL 265 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcch-hcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence 45567788888887 3333222111222223322222333333333321100 111223334444555555566
Q ss_pred hhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhH
Q 011424 401 ITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGG 439 (486)
Q Consensus 401 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~ 439 (486)
......+..+.+++++|..+..+....-.+|-.+|..+.
T Consensus 266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls 304 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS 304 (309)
T ss_dssp -HHHH----------------------------------
T ss_pred hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777888888888898888887777777776666543
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.026 Score=51.85 Aligned_cols=107 Identities=20% Similarity=0.148 Sum_probs=2.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhh-cCCchhhhHH--HHHHHHHHHHHh----------ccchHHHHHHHHHHHHhhccch
Q 011424 86 YVGSSFMFGRALTSVFWGLVADR-YGRKPVIIMG--TASVVIFNTLFG----------LSVNFWMAVLTRFLLGSLNGLL 152 (486)
Q Consensus 86 ~~~s~~~~~~~i~~~~~G~l~dr-~Grr~~l~~~--~~~~~~~~~~~~----------~a~~~~~l~~~r~l~G~~~g~~ 152 (486)
.....+.++-.+|....++.-=+ -.+|++...+ =+++....++|. .-+|-+..++.-++.|+..|-.
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl 265 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL 265 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence 35667888888888877763211 1344444321 222222223331 1235566777888999999988
Q ss_pred hhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhh
Q 011424 153 GPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGF 192 (486)
Q Consensus 153 ~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~ 192 (486)
... ..+..+..++++|..+-.+......+|..+|..++-.
T Consensus 266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~ 306 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFL 306 (309)
T ss_dssp -HHHH------------------------------------
T ss_pred hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 775 8888999999999988888888888888888877643
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.18 E-value=0.023 Score=48.82 Aligned_cols=68 Identities=16% Similarity=0.268 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhh---------hhhcCCch
Q 011424 43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLV---------ADRYGRKP 113 (486)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l---------~dr~Grr~ 113 (486)
.+...++-+.+-+..+.....+-.+.++.+.++.+ ...+.-+....-++..++.|.. .||+|||+
T Consensus 19 vf~yGvGHmlNDitAScWFTYlllfltqiglsp~~------~AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G~~~ 92 (412)
T KOG4830|consen 19 VFAYGVGHMLNDITASCWFTYLLLFLTQIGLSPSS------RAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIGRRM 92 (412)
T ss_pred eeeechhHHHhhHHHHHHHHHHHHHHHHhcCCcch------hHHHHHhhHHHHHHhcccccccccccccHHHhhhhccee
Confidence 33444455555555666666666778889999988 7777778888888888887644 46999997
Q ss_pred hhh
Q 011424 114 VII 116 (486)
Q Consensus 114 ~l~ 116 (486)
..-
T Consensus 93 ~wh 95 (412)
T KOG4830|consen 93 SWH 95 (412)
T ss_pred eee
Confidence 653
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.94 E-value=1.2 Score=42.37 Aligned_cols=111 Identities=17% Similarity=0.060 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhc
Q 011424 85 GYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIF 163 (486)
Q Consensus 85 g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~ 163 (486)
.|-..++.+...+.+...-++.||+|-|+.+..+...+.++..+.+..++.+....-|-..|+-.+....+ ...+++..
T Consensus 335 ~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~ 414 (498)
T KOG0637|consen 335 CLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALYA 414 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHHH
Confidence 34456677777899999999999999888888888888899989999999999999998888644443332 33332221
Q ss_pred cc-----------------------hhhhhHhhHHHHHhhhhHHHHhhhhhhhcc
Q 011424 164 RE-----------------------EHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (486)
Q Consensus 164 ~~-----------------------~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~ 195 (486)
.. ..+|...|+.++...+.+++.....|.+.+
T Consensus 415 ~~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~ 469 (498)
T KOG0637|consen 415 ILGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQ 469 (498)
T ss_pred HhCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhh
Confidence 11 124566777888888888887777777776
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.06 E-value=18 Score=36.50 Aligned_cols=159 Identities=16% Similarity=0.097 Sum_probs=91.3
Q ss_pred HHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHhhhh--
Q 011424 303 EIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLER-ILGPIMVARIAGVLTIPLLTSYPYIAMLSG-- 379 (486)
Q Consensus 303 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 379 (486)
.-+..|+... ++.+...+.-.............+ .+++++| ..||-+.+.++..+..++..++.+......
T Consensus 58 ~nlv~ylt~~-----~~~~~~~aa~~v~~f~G~~~~~~l-~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~ 131 (571)
T KOG1237|consen 58 SNLVTYLTLE-----LHASGGGAANNVNAFGGTQFLLPL-LGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALL 131 (571)
T ss_pred hHHHHHHHHH-----hccchHHHHHHHHHHhhHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 3344555544 455555555444444444444444 4444544 678988888888888777666555433221
Q ss_pred -----------------hhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccc----Cchh--hHHhHHHHHHHHHHHHHh
Q 011424 380 -----------------FGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQ----DQRG--AANGIAMTGMSLFKAAGP 436 (486)
Q Consensus 380 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g--~~~g~~~~~~~~g~~~~~ 436 (486)
......+.........+.++.-+.....-.+-+++ +.+. .-+.......+.|..++-
T Consensus 132 p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~ 211 (571)
T KOG1237|consen 132 PFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQ 211 (571)
T ss_pred CccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHH
Confidence 01122333333444445666667777777777762 2223 445555566677777777
Q ss_pred hhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhh
Q 011424 437 AGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTF 477 (486)
Q Consensus 437 ~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~ 477 (486)
.+.-++-+.. +|...|.+..++.+++.++..
T Consensus 212 t~~vyiq~~~----------~w~lgf~i~~~~~~lai~iF~ 242 (571)
T KOG1237|consen 212 TVLVYIQDNV----------GWKLGFGIPTVLNALAILIFL 242 (571)
T ss_pred HHHHhhhhcc----------cceeeccHHHHHHHHHHHHHH
Confidence 6666655544 788888887777777666543
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.78 E-value=6.5 Score=37.09 Aligned_cols=131 Identities=15% Similarity=0.053 Sum_probs=82.8
Q ss_pred hhhcccHHHHHHHhcccccchhhhhHhHHHHHH-HHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHh------
Q 011424 58 SSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSS-FMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFG------ 130 (486)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~-~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~------ 130 (486)
.....+.|.+..+-..+... ..++.-.+... +.+.-.+|.+.+.++-++= ||. +.+..++-.+..-+..
T Consensus 260 ~VTLsiFPg~~~~~~~~~~~--~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~~-~r~-l~i~v~lR~lfiPlF~~cn~~~ 335 (406)
T KOG1479|consen 260 FVTLSIFPGFCSEVKSSGLL--GDWYALLLVFLSFNVFDLIGSILAALLTWPD-PRK-LTIPVLLRLLFIPLFLLCNYPP 335 (406)
T ss_pred eeeeEecchhhcccccCccc--chhhHHHHHHHHhHHHHHhhhhhhhcccCCC-Cce-ehHHHHHHHHHHHHHHHhccCC
Confidence 33444566665444322211 12335555666 8888888876666655543 333 3333333332222222
Q ss_pred ---ccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhh
Q 011424 131 ---LSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGF 192 (486)
Q Consensus 131 ---~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~ 192 (486)
+-.+-++++..-.+.|+..|-...+ ..+..+..|++++-.+-.+.......|...|..++-.
T Consensus 336 ~~v~~~~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s~l 401 (406)
T KOG1479|consen 336 LPVVFESDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLSWV 401 (406)
T ss_pred CCceecCchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 2346677888899999999998886 8888999999998888788888888888888776643
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=81.67 E-value=4.1 Score=35.74 Aligned_cols=102 Identities=22% Similarity=0.245 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhh-cCCchhhh----HHHHHHHHHHHHHhc-c----chHHHHHHHHHHHHhh-ccch
Q 011424 84 AGYVGSSFMFGRALTSVFWGLVADR-YGRKPVII----MGTASVVIFNTLFGL-S----VNFWMAVLTRFLLGSL-NGLL 152 (486)
Q Consensus 84 ~g~~~s~~~~~~~i~~~~~G~l~dr-~Grr~~l~----~~~~~~~~~~~~~~~-a----~~~~~l~~~r~l~G~~-~g~~ 152 (486)
.....-++..+..+|....|++... +.||+.+. .+++++.+..+..+. . .++..+++.-++.|++ -|..
T Consensus 143 ~~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ 222 (267)
T PF07672_consen 143 IPIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQ 222 (267)
T ss_pred hHHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhh
Confidence 4555666777777888888888874 55665544 233444444433211 1 2466778888888875 3433
Q ss_pred hhHHHHHhhhccchhhhhHhhHHHHHhhhhHHHH
Q 011424 153 GPIKAYACEIFREEHQALGLSTVSTAWGIGLIIG 186 (486)
Q Consensus 153 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig 186 (486)
.+ .-.+..-++..++.+.--.++..+++|.++-
T Consensus 223 ~V-iL~lPhEyK~~~pk~ig~~Fg~iWGfGY~~y 255 (267)
T PF07672_consen 223 GV-ILNLPHEYKGYNPKKIGIQFGLIWGFGYIFY 255 (267)
T ss_pred HH-HhcChhhhcCCCcceehhHHHHHHHHHHHHH
Confidence 33 2333333333333333334444667776553
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=80.97 E-value=60 Score=32.04 Aligned_cols=124 Identities=8% Similarity=0.028 Sum_probs=73.3
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhh-----hhh-------------H
Q 011424 321 STQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLS-----GFG-------------L 382 (486)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-------------~ 382 (486)
+++....+-....+...+.-......+.++.+++++.-...........++++...+. ... .
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~ 135 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK 135 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence 5555555544333322222222455666677888877665555555444444432111 000 0
Q ss_pred H-------HHHHHHHHHHhhhhhhhhh-hhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHH
Q 011424 383 A-------FLLNCASVVKNLLSVSIIT-GLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFS 444 (486)
Q Consensus 383 ~-------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 444 (486)
+ +...+..+..-..+....+ ..+..++|..+.++..+-.++.....++|.+++..+..++.+
T Consensus 136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0111222233334444444 578999999999999999999999999999999988888877
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.45 E-value=7.4 Score=35.13 Aligned_cols=76 Identities=14% Similarity=0.183 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhhccchhh-HHHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcc
Q 011424 120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (486)
Q Consensus 120 ~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~-~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~ 195 (486)
+++.+...+..+.++++...+.-+..|+-.|...+ ..--+.+-.++++|-.+++....+-++|..++..++-.+-+
T Consensus 327 l~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalplh~ 403 (409)
T KOG3880|consen 327 LLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPLHN 403 (409)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccchh
Confidence 34445556667789999999999999996666555 45556666677889999999999999999998888765543
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.09 E-value=31 Score=30.62 Aligned_cols=99 Identities=17% Similarity=0.111 Sum_probs=65.9
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhcCCc--hhhhHHHHHHHHHHHHHhc----cc---hHHHHHHHHHHHHhhccchhh
Q 011424 84 AGYVGSSFMFGRALTSVFWGLVADRYGRK--PVIIMGTASVVIFNTLFGL----SV---NFWMAVLTRFLLGSLNGLLGP 154 (486)
Q Consensus 84 ~g~~~s~~~~~~~i~~~~~G~l~dr~Grr--~~l~~~~~~~~~~~~~~~~----a~---~~~~l~~~r~l~G~~~g~~~~ 154 (486)
-|.+.+.+++...+|+-+..++..|-..| ..+.+..++.++...+... +| +...=+++-.+.-.+.|.++|
T Consensus 284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP 363 (454)
T KOG4332|consen 284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP 363 (454)
T ss_pred chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence 68899999999999999988888776554 4455555544444333222 22 122223334444456788899
Q ss_pred H-HHHHhhhccchhhhhHhhHHHHHhhhh
Q 011424 155 I-KAYACEIFREEHQALGLSTVSTAWGIG 182 (486)
Q Consensus 155 ~-~~~i~~~~~~~~r~~~~~~~~~~~~~g 182 (486)
. ..+=.+..|+++|...+.++..-.++=
T Consensus 364 SimkmRsqyIPEearstimNfFRvPLnif 392 (454)
T KOG4332|consen 364 SIMKMRSQYIPEEARSTIMNFFRVPLNIF 392 (454)
T ss_pred HHHHHHHhhCCHHHHhhhhhheechhhHh
Confidence 6 778888999999999998877655443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 3e-09
Identities = 27/158 (17%), Positives = 67/158 (42%), Gaps = 18/158 (11%)
Query: 89 SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSL 148
+++ ++ +F+G ++DR GR+PVI++G + ++ + + + + + + G +
Sbjct: 42 GAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQG-M 100
Query: 149 NGLLGPIKAYAC--EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSS 206
+G + A +++ S ++ + ++ P +GG L +++
Sbjct: 101 GTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT-------MWNW 153
Query: 207 ESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHN 244
+ + FL LC + A W+PET
Sbjct: 154 RACY----LFLLVLCAGVTF----SMARWMPETRPVDA 183
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.0 bits (134), Expect = 2e-08
Identities = 73/444 (16%), Positives = 125/444 (28%), Gaps = 146/444 (32%)
Query: 87 VGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFG---------------- 130
V F +FW + + P ++ + L
Sbjct: 176 VQCKMDFK-----IFW--LNLKNCNSPETVL-----EMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 131 -LSVNFWMAVLTRFLLGSL--NGLL--------GPIKAYA--CEIF---REEHQALGLST 174
L ++ A L R L N LL A+ C+I R + LS
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 175 VSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKF----PYFLP---C----LCIS 223
+T + + P E +SL K+ P LP +S
Sbjct: 284 ATT---THISLDHHSMTL--TPDE-------VKSLLLKYLDCRPQDLPREVLTTNPRRLS 331
Query: 224 LFA--------------------FGVTIAAFW--LPETLHRHNDDD-----DSCDVSYDA 256
+ A I + L +R D S +
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391
Query: 257 LESASAEVKEEEGREATP---KKSLLKNWPLMSSIIVYCVF-----------SLHDM--- 299
L +V + + K SL++ P S+I + ++ +LH
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451
Query: 300 AYSEI--FSLWANSPKKLGGLNYSTQMVGEVLA-------ITGFSLLVFQLSLYPFLE-- 348
Y+ F P L Y +G L +T F ++ FLE
Sbjct: 452 HYNIPKTFDSDDLIPPYLD--QYFYSHIGHHLKNIEHPERMTLFRMVFLDFR---FLEQK 506
Query: 349 -RILGPIMVARIAGVLTIPLLTSY-PYI--------AMLSGFGLAFLLNCASVV-----K 393
R A + + T+ L Y PYI +++ L FL +
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI-LDFLPKIEENLICSKYT 565
Query: 394 NLLSVSIIT---GLFILQNRAVDQ 414
+LL ++++ +F ++ V +
Sbjct: 566 DLLRIALMAEDEAIFEEAHKQVQR 589
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 1e-07
Identities = 51/409 (12%), Positives = 114/409 (27%), Gaps = 65/409 (15%)
Query: 81 GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI---------FNTLFGL 131
S G + ++ L +GL++D+ G + ++ +++ F L
Sbjct: 42 KSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQY 101
Query: 132 SVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWG-IGLIIGPALG 190
++ V +L N ++A+ ++ R + G + + +G +G +G ++
Sbjct: 102 NILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARM---FGCVGWALGASIV 158
Query: 191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSC 250
G +F F+ L + F +
Sbjct: 159 GI----------------MFTINNQFVFWLGSGCALILAVLLFFAKTDAPS--------- 193
Query: 251 DVSYDALESASAEVKEEEGREATPKKSLLKNWPLMS-SIIVYCVFSLHDMAYSEIFSLWA 309
+ A+A L + L S+ V V +D+ + + +
Sbjct: 194 -----SATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFT 248
Query: 310 NSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLT 369
+ T++ G V + + RI G +AG + +
Sbjct: 249 SFFATGE---QGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRII 304
Query: 370 SYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGI-AMTGM 428
+ + L+ V ++ G F + +
Sbjct: 305 GSSFATSALEVVILKTLHMFEV------PFLLVGCFKYITSQFEVRFSATIYLVCFCFFK 358
Query: 429 SLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTF 477
L G ++ G Q + VL +V L++
Sbjct: 359 QLAMIFMSVLAGNMYESI----------GFQGAYLVLGLVALGFTLISV 397
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 7e-06
Identities = 27/217 (12%), Positives = 55/217 (25%), Gaps = 30/217 (13%)
Query: 85 GYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFL 144
G+ S + G V+DR + + G G ++ F+
Sbjct: 65 GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFV 124
Query: 145 LGSLNGLL-GPIKAYACEI----FREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK 199
L L G G + ++ + +S + A +G I P L
Sbjct: 125 LLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA---- 180
Query: 200 YPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL-----PETLHRHNDDDDSCDVSY 254
+ + +A F + +
Sbjct: 181 --WFNDWHAAL-----------YMPAFCAILVALFAFAMMRDTPQSCGLPPIE---EYKN 224
Query: 255 DALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVY 291
D + + + ++E + + +L N L I
Sbjct: 225 DYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIAN 261
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 3e-05
Identities = 45/324 (13%), Positives = 91/324 (28%), Gaps = 48/324 (14%)
Query: 84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV---NFWMAVL 140
AG + S+F FG + + G++ + K II G + LF + N+ + ++
Sbjct: 63 AGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLV 122
Query: 141 TRFLLGSLNGLLG-PIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL------ 193
F++ + G L + + E L+ T G II G L
Sbjct: 123 GLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVP 182
Query: 194 --------AQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHND 245
E+ S L + PY + + L A + + P ++
Sbjct: 183 HQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTK--FPALQSDNHS 240
Query: 246 DDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIF 305
D ++G + L + +++ + A
Sbjct: 241 D-------------------AKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYL 281
Query: 306 SLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI-----LGPIMVARIA 360
+A + L T + + + + R L + +A
Sbjct: 282 IRYAVEE----IPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMA 337
Query: 361 GVLTIPLLTSYPYIAMLSGFGLAF 384
L + + L+
Sbjct: 338 LCLISAFAGGHVGLIALTLCSAFM 361
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 486 | |||
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 100.0 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.97 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.96 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.58 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.48 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.47 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.36 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.28 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.27 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.27 |
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-39 Score=314.70 Aligned_cols=394 Identities=13% Similarity=0.057 Sum_probs=303.0
Q ss_pred ChhHHHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHH
Q 011424 39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG 118 (486)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~ 118 (486)
+++.+..+.+..+...++.....+.+|.+.+++ .+..+ .|++.+++.++..++++++|+++||+|||++++++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~------~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~ 98 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGD------LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAG 98 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSC------HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhH------HHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHH
Confidence 345566777788888889999999999999999 99999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc----cchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhh
Q 011424 119 TASVVIFNTLFGL----SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL 193 (486)
Q Consensus 119 ~~~~~~~~~~~~~----a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l 193 (486)
.++.+++.+++++ ++|++.++++|+++|++.+...+. .+++.|++|+++|++++++.+.+.++|.+++|.+++++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 178 (451)
T 1pw4_A 99 LILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 178 (451)
T ss_dssp HHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999888886 99999999999999999999999999999999999998
Q ss_pred cccCccCCcccc-cccccccCCChhhHHHHHHHHHHH-HHHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccC
Q 011424 194 AQPAEKYPNLFS-SESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGRE 271 (486)
Q Consensus 194 ~~~~~~~~~~~g-w~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (486)
.+ .+| ||+.+ .+.++..++. ++..+.+||++++.+.+++++... +..++ .+++++++..
T Consensus 179 ~~-------~~g~w~~~f---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~ 239 (451)
T 1pw4_A 179 MA-------WFNDWHAAL---------YMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKN-DYPDD--YNEKAEQELT 239 (451)
T ss_dssp HH-------HTCCSTTCT---------HHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCC-C---------------C
T ss_pred HH-------HhccHHHHH---------HHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcc-ccccc--chhhhhcccc
Confidence 87 555 66555 5555555543 445567888776543222111110 00000 0000001111
Q ss_pred CCc--ccccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011424 272 ATP--KKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLER 349 (486)
Q Consensus 272 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (486)
... .++.+++|.++...+..++..........+.+.|+.+. +|++..+.+.......++.+++.+ ..+++.|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~-~~g~l~~ 313 (451)
T 1pw4_A 240 AKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEV-----KHFALDKSSWAYFLYEYAGIPGTL-LCGWMSD 313 (451)
T ss_dssp CTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTB-----SCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred cccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 111 46778899999888888888887778888888887654 689999999999999999999988 5666777
Q ss_pred hh--hhHHHHHHHHHHHH-HHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHH
Q 011424 350 IL--GPIMVARIAGVLTI-PLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMT 426 (486)
Q Consensus 350 ~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 426 (486)
|+ ++|+.+..+..+.. ++...+.+.. ....+ ...+..++.+.+.....+....+..|.+|++.|+++.|+.+.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 389 (451)
T 1pw4_A 314 KVFRGNRGATGVFFMTLVTIATIVYWMNP---AGNPT-VDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGL 389 (451)
T ss_dssp HTSTTCHHHHHHHHHHHHHHHHHHTTSCC---TTCHH-HHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHH
T ss_pred HHhcCCchhHHHHHHHHHHHHHHHHHHhc---ccCHH-HHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHH
Confidence 77 88877776655544 3433333221 11122 233333444555566667778899999999999999999999
Q ss_pred HHHH-HHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhc
Q 011424 427 GMSL-FKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK 478 (486)
Q Consensus 427 ~~~~-g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~ 478 (486)
..++ |..++|.+.|.+.+.. |+...|++.+++.+++.++.+.
T Consensus 390 ~~~~~g~~~~~~~~g~l~~~~----------g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 390 FGYLGGSVAASAIVGYTVDFF----------GWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHSS----------CSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc----------CcHHHHHHHHHHHHHHHHHHHH
Confidence 9999 9999999999999876 7888999888888887766654
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-38 Score=304.76 Aligned_cols=390 Identities=14% Similarity=0.109 Sum_probs=295.8
Q ss_pred CChhHHHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhH
Q 011424 38 LPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM 117 (486)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~ 117 (486)
..++.+..+....+...++.....+.+|.+.+++|.+..+ .|++.+++.+++.++++++|+++||+|||+++++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~ 96 (438)
T 3o7q_A 23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQ------AGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIIT 96 (438)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHH------HHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHH
Confidence 3455666777788888888899999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH---hccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhh
Q 011424 118 GTASVVIFNTLF---GLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL 193 (486)
Q Consensus 118 ~~~~~~~~~~~~---~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l 193 (486)
+.++.+++.+++ ++++|++.++++|+++|++.+...+. .+++.|++|+++|++++++.+.+.++|..++|.+++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 176 (438)
T 3o7q_A 97 GLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 88999999999999999999988876 99999999999999999999999999999999999999
Q ss_pred c-ccCccC----------CcccccccccccCCChhhHHHHHHHHHHHHHHHHh--cCCcccCCCCCCCcccchhhhcccc
Q 011424 194 A-QPAEKY----------PNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFW--LPETLHRHNDDDDSCDVSYDALESA 260 (486)
Q Consensus 194 ~-~~~~~~----------~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~ 260 (486)
. +..... ....+|+... ..+||.++.+.++..++..+..++ .||++++.+++++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~------------ 243 (438)
T 3o7q_A 177 ILSNVPHQSQDVLDKMSPEQLSAYKHSL-VLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAK------------ 243 (438)
T ss_dssp HHTSSCCCCHHHHHHSCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSS------------
T ss_pred HhcccccccccccccCCcchhhhhhhhh-hhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccc------------
Confidence 8 411000 0000000000 111566665555555544433333 3443322111110
Q ss_pred ccchhhhcccCCCcccccccchhhHHHHHHHHHHHhhhhhhhHHHHHh-hcCccccCccccccchhHHHHHHHHHHHHHH
Q 011424 261 SAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLW-ANSPKKLGGLNYSTQMVGEVLAITGFSLLVF 339 (486)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 339 (486)
+++.....++++++|.++...+..++..........+.+.| ..+. +|++..+++.......++.+++
T Consensus 244 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~ 311 (438)
T 3o7q_A 244 -------QGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEI-----PGMTAGFAANYLTGTMVCFFIG 311 (438)
T ss_dssp -------TTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-----TTCCHHHHHHHHHHHHHHHHHH
T ss_pred -------ccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----CCcchhHHHHHHHHHHHHHHHH
Confidence 11112345678899999988888888887777777888888 6544 6889999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhh
Q 011424 340 QLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGA 419 (486)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 419 (486)
.+ ..+++.||+++|+.+..+..+..++...+.+... .+ . .....+.+++.....+....+..|.+|++ +++
T Consensus 312 ~~-~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~ 382 (438)
T 3o7q_A 312 RF-TGTWLISRFAPHKVLAAYALIAMALCLISAFAGG-----HV-G-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKY 382 (438)
T ss_dssp HH-HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCH-----HH-H-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHH
T ss_pred HH-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCC-----cH-H-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccc
Confidence 88 6677777789999988887777666655544322 11 1 22224444556667788888888888866 888
Q ss_pred HHhHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCCCCCc-hhHHHHHHHHHHHHHHHHhhc
Q 011424 420 ANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPG-SQMVFFVLNVVEAIGVLMTFK 478 (486)
Q Consensus 420 ~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g-~~~~f~~~~~~~~~~~~~~~~ 478 (486)
+.++.. ...+++.++|.+.|.+.|.. | +...|++.+++.++..++.+.
T Consensus 383 ~~~~~~-~~~~g~~~~~~~~g~l~~~~----------g~~~~~~~~~~~~~~~~~~~~~~ 431 (438)
T 3o7q_A 383 GSSFIV-MTIIGGGIVTPVMGFVSDAA----------GNIPTAELIPALCFAVIFIFARF 431 (438)
T ss_dssp HHHHHH-HTTHHHHHHHHHHHHHHHHH----------TSSGGGGHHHHHHHHHHHHHHTT
T ss_pred hhhHHH-HHHHHHHHHHHHHHHHHHHh----------cchHHHHHHHHHHHHHHHHHHHH
Confidence 888877 77899999999999999988 5 777887776666665555444
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=312.34 Aligned_cols=421 Identities=13% Similarity=0.043 Sum_probs=296.4
Q ss_pred HHHHHHHhhhhhhhhcccHHHHHHHhcccccc--hhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHH
Q 011424 46 IWIIVLCTALPISSLFPFLYFMIKDFQIAKRE--EDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVV 123 (486)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~ 123 (486)
..++.++.+++.+.++..+|.+.++++.+... ...+...|++.+++.+|..+|++++|+++||+|||++++++.+++.
T Consensus 17 a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~ 96 (491)
T 4gc0_A 17 ATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFF 96 (491)
T ss_dssp HHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34566777888899999999999988654322 2233448999999999999999999999999999999999999999
Q ss_pred HHHHHHh------------------ccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHH
Q 011424 124 IFNTLFG------------------LSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLI 184 (486)
Q Consensus 124 ~~~~~~~------------------~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ 184 (486)
+++++++ +++|+++++++|+++|++.|...+. ..+++|+.|+++|++..+..+.+..+|.+
T Consensus 97 i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~ 176 (491)
T 4gc0_A 97 ISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQL 176 (491)
T ss_dssp HHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhh
Confidence 9999998 4789999999999999999988886 99999999999999999999999999999
Q ss_pred HHhhhhhhhcccCccCCcccccccccccCCChhhHHHHHHHHHHHHHHHHhcCCcccCCCCCCCcccchh--hhcccccc
Q 011424 185 IGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSY--DALESASA 262 (486)
Q Consensus 185 ig~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~--~~~~~~~~ 262 (486)
+++.++..+.. ..++.... .+.||.++....+..++.++..+++||+|++...+++.++..+ ++......
T Consensus 177 ~~~~~~~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~ 248 (491)
T 4gc0_A 177 LVYCVNYFIAR-------SGDASWLN-TDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTL 248 (491)
T ss_dssp HHHHHHHHHHT-------TSCTTTTT-TTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hhhhcchhhcc-------cccccccc-chhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCch
Confidence 99999888876 44444433 5668888888888888888888999999987544433322211 11110000
Q ss_pred c--------hhhhcccCCCcccccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHH
Q 011424 263 E--------VKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGF 334 (486)
Q Consensus 263 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 334 (486)
. +...++++.......++.+..........+...........+..+.. +..+.+...........++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 323 (491)
T 4gc0_A 249 ATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVF-----KTLGASTDIALLQTIIVGV 323 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHH-----HHSSCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHH-----HhcCCCccchhhHHHHHHH
Confidence 0 00011111112223334444443333333333222222222222221 1245566666667777788
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccc
Q 011424 335 SLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQ 414 (486)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (486)
..+++.+ ...++.||+|||+....+.....++...+........ ..+.......+....+..+..+..+.+.+|.+|+
T Consensus 324 ~~~~~~~-~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt 401 (491)
T 4gc0_A 324 INLTFTV-LAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQA-PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPN 401 (491)
T ss_dssp HHHHHHH-HHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCT
T ss_pred HHHHHHH-HHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCH
Confidence 8888877 6666777789999988888777776666554433322 2222333333344445556677888999999999
Q ss_pred CchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhccccccCCC
Q 011424 415 DQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQRHD 486 (486)
Q Consensus 415 ~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 486 (486)
+.|+++.|+.+..+++++++++.+.+.+.+....... .+....|++++++++++.++.++ ++||+|+
T Consensus 402 ~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~----~~~~~~~~i~~~~~~~~~i~~~~-~~PETkg 468 (491)
T 4gc0_A 402 AIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAH----FHNGFSYWIYGCMGVLAALFMWK-FVPETKG 468 (491)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHHH-HCCCCTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhhHHHHHHHHHHHHHHHHHHh-eecCCCC
Confidence 9999999999999999999999998877654311100 04566888899999999888877 7899874
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-35 Score=278.93 Aligned_cols=357 Identities=13% Similarity=0.149 Sum_probs=269.0
Q ss_pred HHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHH
Q 011424 44 FSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVV 123 (486)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~ 123 (486)
+.+.+..++..++.....+.+|.+.+++|.++.+ .+++.+.+.++..+++++.|+++||+|||+++.++.++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 76 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGA------VQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFM 76 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHH------HHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence 4566777888889999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccCccCCc
Q 011424 124 IFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPN 202 (486)
Q Consensus 124 ~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~~~~~ 202 (486)
++.+++++++|++.+++.|+++|++.+...+. .+++.|++|+++|+++++..+....+|..++|.+++++.+
T Consensus 77 ~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~------- 149 (375)
T 2gfp_A 77 LATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT------- 149 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC-------
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-------
Confidence 99999999999999999999999999988886 9999999999999999999999999999999999999987
Q ss_pred ccccccccccCCChhhHHHHHHHHHHHHH-HHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCCCcccccccc
Q 011424 203 LFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKN 281 (486)
Q Consensus 203 ~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (486)
.+| ||..+.+.++..++..+ ..+.+||++++++++ ++.....++.+|+
T Consensus 150 ~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~ 198 (375)
T 2gfp_A 150 MWN---------WRACYLFLLVLCAGVTFSMARWMPETRPVDAPR----------------------TRLLTSYKTLFGN 198 (375)
T ss_dssp HHH---------HHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCC----------------------CCTTTCSTHHHHH
T ss_pred hcc---------HHHHHHHHHHHHHHHHHHHHHHCcccCCCCccc----------------------ccHHHHHHHHhcC
Confidence 344 45555666655555443 445667765432211 1122345678889
Q ss_pred hhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 011424 282 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG 361 (486)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (486)
|+++...+..++.......+..+.|.|..+ .+|.++.+.+.......++.+++.. ..+++.||.+++ ...+.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~~~g~~~~~~~~~~~~~~~-~~~~l~~r~~~~--~~~~~ 270 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGA-----VLGLSSMTVSILFILPIPAAFFGAW-FAGRPNKRFSTL--MWQSV 270 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHH-----HHHHHHHHHHHHHHTHHHHHHHHHH-HHHTTTTHHHHH--HHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH--HHHHH
Confidence 998888777777665555554444433332 2688999999999999999999887 556666665652 22222
Q ss_pred HH-HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHH
Q 011424 362 VL-TIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGG 440 (486)
Q Consensus 362 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g 440 (486)
.. ...+...+..... .........+..++.+++.....+....+..|..| ++|+++.|+.+...++|..++|.+.|
T Consensus 271 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g 347 (375)
T 2gfp_A 271 ICCLLAGLLMWIPDWF--GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSA 347 (375)
T ss_dssp HHHHHTSSSSSHHHHH--HHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCT
T ss_pred HHHHHHHHHHHHHhhh--ccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHH
Confidence 22 1111111111110 01112223333344455556667888888899888 89999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCCCchhHHHHHH
Q 011424 441 ALFSWAQKRLDASFLPGSQMVFFVL 465 (486)
Q Consensus 441 ~l~~~~~~~~~~~~~~g~~~~f~~~ 465 (486)
.+.+.. ++...+.+.
T Consensus 348 ~l~~~~----------~~~~~~~~~ 362 (375)
T 2gfp_A 348 MLPQTG----------QGSLGLLMT 362 (375)
T ss_dssp HHHHHH----------HHHHHHHHH
T ss_pred HHhcCC----------cccHHHHHH
Confidence 998876 566666553
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-33 Score=272.43 Aligned_cols=399 Identities=12% Similarity=0.069 Sum_probs=259.5
Q ss_pred hHHHHHHHHHHHhhhhhhhhcccHHH-HHHH-----hcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhh-cCCch
Q 011424 41 TELFSIWIIVLCTALPISSLFPFLYF-MIKD-----FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKP 113 (486)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr-~Grr~ 113 (486)
+.++.+....+...+......+.++. +.++ +|.+..+ .+++.+++.++..++++++|+++|| +|||+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~ 86 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRAT------AASIMAIYASMVYLSGTIGGFVADRIIGARP 86 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhccccchH
Confidence 34556666677777776666556654 4444 8999999 9999999999999999999999999 89999
Q ss_pred hhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchh--hhhHhhHHHHHhhhhHHHHhhhh
Q 011424 114 VIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEH--QALGLSTVSTAWGIGLIIGPALG 190 (486)
Q Consensus 114 ~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~ig~~l~ 190 (486)
++.++.++.+++.+++++++|++.++++|+++|++.+...+. .+++.|++|+++ |+++++.++.+.++|..++|.++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 166 (491)
T 4aps_A 87 AVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIV 166 (491)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988886 999999999988 77888889999999999999999
Q ss_pred hhhcccCccCCcccccccccccCCChhhHHHHHHHHHHHHHHHHh-cCCcccCCCCCCCc---ccchhhhccc-------
Q 011424 191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFW-LPETLHRHNDDDDS---CDVSYDALES------- 259 (486)
Q Consensus 191 ~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~---~~~~~~~~~~------- 259 (486)
+.+.+ .. +|+.++.+.++..++..+...+ .|+..+....++++ .++..+..+.
T Consensus 167 ~~l~~-------~~---------g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~ 230 (491)
T 4aps_A 167 GAAQE-------AA---------GYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAG 230 (491)
T ss_dssp HHHHH-------HS---------CHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHH
T ss_pred HHHHh-------hh---------hHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHH
Confidence 99998 34 4455556655555544433332 23222211111111 0100000000
Q ss_pred ------------cccchh------------------hhcccCCCcccccccchhhHHHHHHHHHHHhhhhhhhHHHHHhh
Q 011424 260 ------------ASAEVK------------------EEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWA 309 (486)
Q Consensus 260 ------------~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (486)
..+.++ ...++......+..+....+...+...+...........++.|.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (491)
T 4aps_A 231 FIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFA 310 (491)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHH
T ss_pred HHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 000000 00000111111111222233344444444444445555666666
Q ss_pred cCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHHHHHHHHhhh---hhh
Q 011424 310 NSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVAR-----IAGVLTIPLLTSYPYIAMLS---GFG 381 (486)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~---~~~ 381 (486)
.+. .+.+....+.......+..+++..+. +++.||.+||+... .+..+..++...+....... ...
T Consensus 311 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (491)
T 4aps_A 311 AER-----VDSSWFPVSWFQSLNPLFIMLYTPFF-AWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKV 384 (491)
T ss_dssp HHS-----CCCSSSCSGGGTTHHHHHHHHHHHHH-HHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTC
T ss_pred HHH-----hccCccCHHHHhccchHHHHHHHHHH-HHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 543 35555667777777788888887744 45666667765433 44444444444443322110 011
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhhhcCCCCCCchhHH
Q 011424 382 LAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMV 461 (486)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~ 461 (486)
......+..++.+.+.....+....+..|.+|++.|+++.|+.+...++|..++|.+.+.+.+. ++...
T Consensus 385 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-----------~~~~~ 453 (491)
T 4aps_A 385 SPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-----------SEVAY 453 (491)
T ss_dssp CTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-----------STTHH
T ss_pred cHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------cHHHH
Confidence 1222333444455555666778888999999999999999999999999999999998877542 46667
Q ss_pred HHHHHHHHHHHHHHhhc
Q 011424 462 FFVLNVVEAIGVLMTFK 478 (486)
Q Consensus 462 f~~~~~~~~~~~~~~~~ 478 (486)
|...+++.+++.++.+.
T Consensus 454 ~~~~~~~~~~~~~~~~~ 470 (491)
T 4aps_A 454 FSYFGLGSVVLGIVLVF 470 (491)
T ss_dssp HHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777777666554
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-31 Score=253.93 Aligned_cols=389 Identities=11% Similarity=0.103 Sum_probs=247.0
Q ss_pred hHHHHHHHHHHHhhhhhhhhcccHHHHH-HHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHH
Q 011424 41 TELFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT 119 (486)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~ 119 (486)
+.++.+....+..........+.+|.+. +++|.+..+ .|++.+.+.++..++++++|+++||+|||++++++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~------~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~ 80 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSD------TGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWII 80 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTT------SHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 4455566666667777778888898765 568999999 999999999999999999999999999999999988
Q ss_pred HHHHHHH---HHHhccchHH-HHHHHHHHHHhhccchhhH-HHHHhhhccc--hhhhhHhhHHHHHhhhhHHHHhhhhhh
Q 011424 120 ASVVIFN---TLFGLSVNFW-MAVLTRFLLGSLNGLLGPI-KAYACEIFRE--EHQALGLSTVSTAWGIGLIIGPALGGF 192 (486)
Q Consensus 120 ~~~~~~~---~~~~~a~~~~-~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~ig~~l~~~ 192 (486)
.+.+++. ..+.+++... .+...+++.|++.|...+. ...+.++.++ ++|+...+.......+|..++|.++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~ 160 (417)
T 2cfq_A 81 TGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGI 160 (417)
T ss_dssp HHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHH
Confidence 8775532 1122332221 2344555555554443332 3334444433 456777788888889999999999999
Q ss_pred hcccCccCCcccccccccccCCChhhHHHHHHHHHHHHHHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCC
Q 011424 193 LAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREA 272 (486)
Q Consensus 193 l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (486)
+.+ .+| +.++++.++..++..+..++.+|++++..+++++.+ ++.++...
T Consensus 161 l~~--------~~~---------~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~ 210 (417)
T 2cfq_A 161 MFT--------INN---------QFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVG-------------ANHSAFSL 210 (417)
T ss_dssp HHH--------HCS---------HHHHTTTTTTTTTHHHHSCSSCCCCSCSSCSSSSSS-------------SCCCCCCH
T ss_pred HHH--------hch---------hHHHHHHHHHHHHHHHHHHHcCcccccccccccccc-------------cccccccH
Confidence 875 233 333444444433333333444433321110000000 00000111
Q ss_pred CcccccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011424 273 TPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG 352 (486)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (486)
...++++++|+++...+..+........+.+++|.|+.+.. +..+.+....++......++.+++.+ ..+++.||++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~-~~g~l~dr~g 287 (417)
T 2cfq_A 211 KLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFF--ATGEQGTRVFGYVTTMGELLNASIMF-FAPLIINRIG 287 (417)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--SSHHHHTHHHHHHHHHHHHHHHHHHH-HHHHHHHHHC
T ss_pred HHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--hccCCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHhc
Confidence 23456788888877666545444444444455666664321 11234455667778887788888877 6667777789
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHH-HHHHHHH
Q 011424 353 PIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIA-MTGMSLF 431 (486)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~~g 431 (486)
||+.+..+..+..+....+.+.. ..+ .+.+...+.+.......+....+..|.+|++.|+++.++. +....+|
T Consensus 288 ~~~~l~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg 361 (417)
T 2cfq_A 288 GKNALLLAGTIMSVRIIGSSFAT-----SAL-EVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLA 361 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCC-----SHH-HHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-----cHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHH
Confidence 99988777666555444433211 111 1222222222233334455677889999999999999994 7888999
Q ss_pred HHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhccccccCC
Q 011424 432 KAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQRH 485 (486)
Q Consensus 432 ~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 485 (486)
++++|.+.|.+.+.. |+...|.+.+++.+++.++.+. ..||++
T Consensus 362 ~~~gp~l~G~l~~~~----------g~~~~f~~~~~~~l~~~~~~~~-~~~~~~ 404 (417)
T 2cfq_A 362 MIFMSVLAGNMYESI----------GFQGAYLVLGLVALGFTLISVF-TLSGPG 404 (417)
T ss_dssp HHHHTHHHHTHHHHS----------HHHHHHHHHHHHHHHHHHHHTT-SSCCSC
T ss_pred HHHhhhhHHHHHHhc----------CcHHHHHHHHHHHHHHHHHHHh-hhcCCC
Confidence 999999999999876 6888899888888888777655 455543
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=243.00 Aligned_cols=408 Identities=12% Similarity=0.054 Sum_probs=237.0
Q ss_pred HHHHHHHHHHhhhhhhhhcccHHH-HHHHhc------ccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhc-CCchh
Q 011424 43 LFSIWIIVLCTALPISSLFPFLYF-MIKDFQ------IAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-GRKPV 114 (486)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~-Grr~~ 114 (486)
++.+.+..++..+......+.++. +.+++| .+..+ .+++.+++.++..++.+++|+++||+ |||++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~------~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~ 87 (524)
T 2xut_A 14 IPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAV------AKDVFHSFVIGVYFFPLLGGWIADRFFGKYNT 87 (524)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTT------HHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 344555666666666666666664 567789 89988 99999999999999999999999999 99999
Q ss_pred hhHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhH---HHHHhhhhHHHHhhh
Q 011424 115 IIMGTASVVIFNTLFGLSV-NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLST---VSTAWGIGLIIGPAL 189 (486)
Q Consensus 115 l~~~~~~~~~~~~~~~~a~-~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~---~~~~~~~g~~ig~~l 189 (486)
+.++.++.+++.+++++++ +++.+++.|++.|++.+...+. .+++.|++|+++|+++.+. .+.+.++|..++|.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~ 167 (524)
T 2xut_A 88 ILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLS 167 (524)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 9999999999999999888886 9999999999999876666 899999999999999
Q ss_pred hhhhcccCccCCcccccccccccCCChhhHHHHHHHHHHHHHHHHhcCC-cccCCCCCCCcccc---hhhhcccccc--c
Q 011424 190 GGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPE-TLHRHNDDDDSCDV---SYDALESASA--E 263 (486)
Q Consensus 190 ~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~~~~~~~~~~~~~~---~~~~~~~~~~--~ 263 (486)
++.+.+ ..+|+..+.+.++..++..+..++.++ .++..+++++..+. .....++... +
T Consensus 168 ~~~l~~----------------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (524)
T 2xut_A 168 MPLLLK----------------NFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKG 231 (524)
T ss_dssp STHHHH----------------TSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------------CTTHH
T ss_pred HHHHhc----------------cccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccC
Confidence 999987 344555556666555554444433322 11111110000000 0000000000 0
Q ss_pred h------------------------------------hhhccc----------CCCcccccccchhhHHHHHH---HHHH
Q 011424 264 V------------------------------------KEEEGR----------EATPKKSLLKNWPLMSSIIV---YCVF 294 (486)
Q Consensus 264 ~------------------------------------~~~~~~----------~~~~~~~~~~~~~~~~~~~~---~~~~ 294 (486)
. .+++.+ +.....+..+.++.+..... ..+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (524)
T 2xut_A 232 NIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPF 311 (524)
T ss_dssp HHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHH
T ss_pred ccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000000 00000011112222211111 1111
Q ss_pred HhhhhhhhHHHHHhhcCccccCcccccc-chhHHHHHHHHHHHHHHHHHHHHHH----HHh---hhhHHHHHHHHHHHHH
Q 011424 295 SLHDMAYSEIFSLWANSPKKLGGLNYST-QMVGEVLAITGFSLLVFQLSLYPFL----ERI---LGPIMVARIAGVLTIP 366 (486)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~~ 366 (486)
..........++.+... .+.+. ...+.......++.++...+..+.. +|+ .++++.+..+..+..+
T Consensus 312 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 385 (524)
T 2xut_A 312 WSLFDQKASTWILQAND------MVKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGL 385 (524)
T ss_dssp HTTTSSTTTHHHHHHHH------SCCCSSSCHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHH
T ss_pred HHHHhccchhhHHhHHh------cCCCeeecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHH
Confidence 11111112222222211 11111 2345555544455555544333322 333 1123344455555444
Q ss_pred HHHHHHHHHhhh---hhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHH
Q 011424 367 LLTSYPYIAMLS---GFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALF 443 (486)
Q Consensus 367 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~ 443 (486)
+...+.+..... .........+..++.+.+.....+....+..|.+|++.||+++|+.++..++|+.++|.+.|.+.
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~ 465 (524)
T 2xut_A 386 SWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVK 465 (524)
T ss_dssp HHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444433321000 00111223334455566666778888899999999999999999999999999999999999887
Q ss_pred HHHhhhcCCCCCCch-hHHHHHHHHHHHHHHHHhhc
Q 011424 444 SWAQKRLDASFLPGS-QMVFFVLNVVEAIGVLMTFK 478 (486)
Q Consensus 444 ~~~~~~~~~~~~~g~-~~~f~~~~~~~~~~~~~~~~ 478 (486)
+.....+......+. ...|++.+++.+++.++.+.
T Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (524)
T 2xut_A 466 SPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFAL 501 (524)
T ss_dssp SCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ccccccccccccccccccHHHHHHHHHHHHHHHHHH
Confidence 632100000000011 23367777777777666554
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.7e-14 Score=139.52 Aligned_cols=174 Identities=12% Similarity=0.066 Sum_probs=141.7
Q ss_pred hHHHHHHHHHHHhhhhhhhhcccHHHHHHH-hcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhc--CCchhhhH
Q 011424 41 TELFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY--GRKPVIIM 117 (486)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~--Grr~~l~~ 117 (486)
+.++...+..++............|.+.++ +|.+..+ .+++.+...++..++.++.|++.||+ |||+.+.+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~ 325 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDK------SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGV 325 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHH
Confidence 455666666677777777777888888777 8999888 99999999999999999999999999 99999988
Q ss_pred HHHHHH-HHHHHHhcc--chHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhh-hHHHHhhhhhh
Q 011424 118 GTASVV-IFNTLFGLS--VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGI-GLIIGPALGGF 192 (486)
Q Consensus 118 ~~~~~~-~~~~~~~~a--~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~ig~~l~~~ 192 (486)
+..+.. ++.++..+. .+.+.+.+.-++.|++.+...+. ..++.|.+|+++|++++++.+....+ |..++|.+.+.
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~ 405 (451)
T 1pw4_A 326 FFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY 405 (451)
T ss_dssp HHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877776 676776666 47888888889999987777765 89999999999999999999999999 99999999999
Q ss_pred hcccCccCCcccccccccccCCChhhHHHHHHHHHHHHHHHHhc
Q 011424 193 LAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL 236 (486)
Q Consensus 193 l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (486)
+.+ ..+|...+.+.++..++..+..+++
T Consensus 406 l~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 406 TVD----------------FFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHH----------------SSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH----------------hcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 998 4445555566666665555444443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=4e-13 Score=128.28 Aligned_cols=141 Identities=18% Similarity=0.121 Sum_probs=112.7
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhh
Q 011424 84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEI 162 (486)
Q Consensus 84 ~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~ 162 (486)
.++..++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+. ..+++|.
T Consensus 261 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 340 (417)
T 2cfq_A 261 FGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQ 340 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888888999999999999999999999999888888888888888888888888888876665554 8899999
Q ss_pred ccchhhhhHhhH-HHHHhhhhHHHHhhhhhhhcccCccCCcccccccccccCCChhhHHHHHHHHHHHHHH-HHhcCCcc
Q 011424 163 FREEHQALGLST-VSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETL 240 (486)
Q Consensus 163 ~~~~~r~~~~~~-~~~~~~~g~~ig~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~ 240 (486)
+|++.|+++.+. ++....+|..++|.+++++.+ ..++...+.+.++.+++..+. ....||++
T Consensus 341 ~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~----------------~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 341 FEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE----------------SIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp SCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHH----------------HSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred CCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHH----------------hcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 999999999998 478888999999999999987 333444445656555555443 33455433
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=7.2e-13 Score=127.50 Aligned_cols=145 Identities=10% Similarity=0.056 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHhhhhhhhhcccHHHH-HHHh-cccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHH
Q 011424 42 ELFSIWIIVLCTALPISSLFPFLYFM-IKDF-QIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT 119 (486)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~ 119 (486)
.++...+..++............|.+ .++. |.+..+ .++..+...++..++.++.|+++||+|||+++.++.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~ 332 (438)
T 3o7q_A 259 HWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGF------AANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYA 332 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 34444455555555556666677766 6554 999888 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcc
Q 011424 120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195 (486)
Q Consensus 120 ~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~ 195 (486)
++..++.++..+.++.+.++.. ++.|++.+...+. .++..|.+|++ |+.+.++.. ...+|..++|.+.+++.+
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~ 406 (438)
T 3o7q_A 333 LIAMALCLISAFAGGHVGLIAL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSD 406 (438)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHH-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHH-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHH
Confidence 9999999888888887765554 8888888887776 88889999876 888888777 566999999999999998
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.3e-11 Score=118.79 Aligned_cols=180 Identities=16% Similarity=0.078 Sum_probs=137.9
Q ss_pred hhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHH
Q 011424 282 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI-LGPIMVARIA 360 (486)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 360 (486)
+.++......++............+.|+.+....+++|.+..+.+++.+...++..++++ ..+++.|| +|||+.+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~g~l~dr~~g~r~~~~~~ 91 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGT-IGGFVADRIIGARPAVFWG 91 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTSCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhccccchHHHHHH
Confidence 345556666666666666666777777765433445799999999999999999999998 66677777 7999999998
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCc--hhhHHhHHHHHHHHHHHHHhhh
Q 011424 361 GVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQ--RGAANGIAMTGMSLFKAAGPAG 438 (486)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~g~~~~~~~~g~~~~~~~ 438 (486)
..+..++..+..+.... ..+.+..++.+.+.....+....++.|.+|+++ |+++.++.+....+|..++|.+
T Consensus 92 ~~~~~~~~~~~~~~~~~------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 165 (491)
T 4aps_A 92 GVLIMLGHIVLALPFGA------SALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLI 165 (491)
T ss_dssp HHHHHHHHHHHHSCCST------THHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhH------HHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHH
Confidence 88877777666543221 133344455566677778889999999999988 7788888999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhc
Q 011424 439 GGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK 478 (486)
Q Consensus 439 ~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~ 478 (486)
.+.+.+.. ||+..|++.++..+++.+..+.
T Consensus 166 ~~~l~~~~----------g~~~~f~~~~~~~~~~~~~~~~ 195 (491)
T 4aps_A 166 VGAAQEAA----------GYHVAFSLAAIGMFIGLLVYYF 195 (491)
T ss_dssp HHHHHHHS----------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhh----------hHHHHHHHHHHHHHHHHHHHHH
Confidence 99999876 8999999988777776665543
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=8.5e-12 Score=121.88 Aligned_cols=181 Identities=14% Similarity=0.098 Sum_probs=121.2
Q ss_pred HHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHH
Q 011424 45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI 124 (486)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~ 124 (486)
......+....+........|.+.++.+.+..+ .........+...++.++.+++.||+|||+.++.+.....+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~ 354 (491)
T 4gc0_A 281 GVMLSIFQQFVGINVVLYYAPEVFKTLGASTDI------ALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAI 354 (491)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHhcchHHHHhcCCCccc------hhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHH
Confidence 344444444555566666677888888887766 66677777888899999999999999999999998888877
Q ss_pred HHHHHhcc-----chHHHHHHHHH-HHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhhcccC
Q 011424 125 FNTLFGLS-----VNFWMAVLTRF-LLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA 197 (486)
Q Consensus 125 ~~~~~~~a-----~~~~~l~~~r~-l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~ 197 (486)
+.+..+.. ++...+...-+ ..+.+.+ ..+. ..+.+|.+|.+.|++++++......+|..+++.+...+.+..
T Consensus 355 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~ 433 (491)
T 4gc0_A 355 GMFSLGTAFYTQAPGIVALLSMLFYVAAFAMS-WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNS 433 (491)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT-TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHH
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHhH-HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76655432 22222222222 2223333 3444 889999999999999999999999999999888877665410
Q ss_pred ccCCcccccccccccCCChhhHHHHHHHHHHH-HHHHHhcCCcccC
Q 011424 198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHR 242 (486)
Q Consensus 198 ~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~ 242 (486)
.... ..++...+++.++++++. ++.++++||++.+
T Consensus 434 -------~~~~---~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~ 469 (491)
T 4gc0_A 434 -------WLVA---HFHNGFSYWIYGCMGVLAALFMWKFVPETKGK 469 (491)
T ss_dssp -------HHHH---HHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred -------HHHh---hhhhhHHHHHHHHHHHHHHHHHHheecCCCCC
Confidence 0000 112223334555555554 4566789998754
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.27 E-value=4.2e-11 Score=112.58 Aligned_cols=172 Identities=16% Similarity=0.076 Sum_probs=130.5
Q ss_pred HHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 011424 289 IVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLL 368 (486)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (486)
...++.......+....+.+. +++|.+..+.++..+...++..++++ ..+++.||+|||+.+..+..+..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~------~~~g~s~~~~g~~~~~~~~~~~~~~~-~~g~l~dr~g~r~~~~~~~~~~~~~~ 79 (375)
T 2gfp_A 7 LLVAVGQMAQTIYIPAIADMA------RDLNVREGAVQSVMGAYLLTYGVSQL-FYGPISDRVGRRPVILVGMSIFMLAT 79 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------TTSSSTTHHHHHHHHHHHHHHHHHHT-THHHHHTTSCCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHH------HHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCchhHHHHHHHHHHHH
Confidence 333444444444444444433 33799999999999999999999988 66677777899999998888877777
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHHHHHHhhhHHHHHHHHhh
Q 011424 369 TSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQK 448 (486)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~ 448 (486)
....+... ...+.+..++.+.+.....+....+..|..|+++|+++.++.+....+|..++|.+.+.+.+..
T Consensus 80 ~~~~~~~~------~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-- 151 (375)
T 2gfp_A 80 LVAVTTSS------LTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMW-- 151 (375)
T ss_dssp HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHH--
T ss_pred HHHHHhcc------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc--
Confidence 76665432 2234445555666777778888999999999999999999999999999999999999998876
Q ss_pred hcCCCCCCchhHHHHHHHHHHHHHHHHhhccccccC
Q 011424 449 RLDASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQR 484 (486)
Q Consensus 449 ~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 484 (486)
+|+..|.+.+++.++..+...+ ..||+
T Consensus 152 --------~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 178 (375)
T 2gfp_A 152 --------NWRACYLFLLVLCAGVTFSMAR-WMPET 178 (375)
T ss_dssp --------HHHHHHHHHHHHHHHHHCCCCC-SSCCC
T ss_pred --------cHHHHHHHHHHHHHHHHHHHHH-HCccc
Confidence 7999999888888777765544 45654
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-10 Score=114.65 Aligned_cols=176 Identities=10% Similarity=0.005 Sum_probs=132.6
Q ss_pred hhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccc------cccchhHHHHHHHHHHHHHHHHHHHHHHHHhh-hhH
Q 011424 282 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLN------YSTQMVGEVLAITGFSLLVFQLSLYPFLERIL-GPI 354 (486)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 354 (486)
+.++...+..++...........++.|+.+. +| ++..+.+++.+...++..++.+ ..+++.||+ |||
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-----~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~-~~G~l~dr~~g~r 85 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTA-----LLLSIPEELRGAVAKDVFHSFVIGVYFFPL-LGGWIADRFFGKY 85 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHS-----CSSCCSSSTTTTTHHHHHHHHHHHHHHTHH-HHHHHHTTSSCSH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hccccccccCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcch
Confidence 4455566666666666666666777776544 56 8999999999999999999988 677778888 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhH---HHHHHHHH
Q 011424 355 MVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGI---AMTGMSLF 431 (486)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~---~~~~~~~g 431 (486)
+.+..+..+..++.++..+.. .....+.+..++.+.+.....+...+++.|.+|+++|+++.+. .+...++|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g 160 (524)
T 2xut_A 86 NTILWLSLIYCVGHAFLAIFE-----HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFG 160 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHTS-----SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc-----ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHH
Confidence 998888877777766665532 0111333444555666677788889999999999999877666 88889999
Q ss_pred HHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhc
Q 011424 432 KAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK 478 (486)
Q Consensus 432 ~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~ 478 (486)
..++|.+.+.+.+.. ||+..|++.+++.+++.+..+.
T Consensus 161 ~~~g~~~~~~l~~~~----------g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 161 SFFASLSMPLLLKNF----------GAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHTSTHHHHTS----------CHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhccc----------cHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998765 7999999888887776665543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 486 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 3e-13 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 5e-08 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 68.9 bits (167), Expect = 3e-13
Identities = 49/400 (12%), Positives = 99/400 (24%), Gaps = 38/400 (9%)
Query: 84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRF 143
G+ S + G V+DR + + G G ++ F
Sbjct: 61 LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMF 120
Query: 144 LLGSLNGLLGPIKAYAC-----EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE 198
+L L G + C + ++ + +S + A +G I P L
Sbjct: 121 VLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLL------ 174
Query: 199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALE 258
+ + + A V + AF + + + D +
Sbjct: 175 ---------GMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPD 225
Query: 259 SASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGL 318
+ + ++E + + +L N L I L + + K
Sbjct: 226 DYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALD 285
Query: 319 NYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLS 378
S A +LL +S F + + + P
Sbjct: 286 KSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTV 345
Query: 379 GFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKA-AGPA 437
++ + + + + G A G L + A A
Sbjct: 346 DMICMIVIGFL-------IYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASA 398
Query: 438 GGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTF 477
G + G F V+ + V++
Sbjct: 399 IVGYTVDFF----------GWDGGFMVMIGGSILAVILLI 428
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 52.5 bits (124), Expect = 5e-08
Identities = 48/438 (10%), Positives = 105/438 (23%), Gaps = 50/438 (11%)
Query: 42 ELFSIWIIVLCTALPISSLFPFL-YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSV 100
+ + + + FPF ++ I+ S G + ++ L
Sbjct: 8 NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHIS------KSDTGIIFAAISLFSLLFQP 61
Query: 101 FWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYAC 160
+GL++D+ G + ++ +++ F + + + + + G+ A
Sbjct: 62 LFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAG 121
Query: 161 EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCL 220
E + +G + G A +F F+ L
Sbjct: 122 APAVEAFIEKVSRRSNFEFGRARMFGCVGWALGA---------SIVGIMFTINNQFVFWL 172
Query: 221 CISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLK 280
+ F + + + + + E + L
Sbjct: 173 GSGCALILAVLLFFAKTDAPSSATVANAV--------GANHSAFSLKLALELFRQPKLWF 224
Query: 281 NWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQ 340
+ + A +T +I F+ L+
Sbjct: 225 LSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIIN 284
Query: 341 LSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSI 400
+ G IM RI G + L F + F +
Sbjct: 285 RIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPF---------------L 329
Query: 401 ITGLFILQNRAVDQDQRGAANGIAMT-GMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQ 459
+ G F + + L G ++ G Q
Sbjct: 330 LVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI----------GFQ 379
Query: 460 MVFFVLNVVEAIGVLMTF 477
+ VL +V L++
Sbjct: 380 GAYLVLGLVALGFTLISV 397
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 486 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.97 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.52 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.4 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.8e-38 Score=305.67 Aligned_cols=400 Identities=12% Similarity=0.032 Sum_probs=283.5
Q ss_pred ChhHHHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHH
Q 011424 39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG 118 (486)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~ 118 (486)
+|..+..++++.+..+++...+..+.|.+. |+|.|.+| .|++.+++.+++.++++++|+++||+|||+++.++
T Consensus 23 ~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~------~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~ 95 (447)
T d1pw4a_ 23 RWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGD------LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAG 95 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSC------HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence 444555666677777777777887778665 68999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccc----hHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhh
Q 011424 119 TASVVIFNTLFGLSV----NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL 193 (486)
Q Consensus 119 ~~~~~~~~~~~~~a~----~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l 193 (486)
.++.+++.+++++++ +++.+++.|++.|++.|...+. .+++.|++|+++|++++++.+.+..+|..++|.+++.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~ 175 (447)
T d1pw4a_ 96 LILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 175 (447)
T ss_dssp HHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhH
Confidence 999999999988764 7789999999999998888775 99999999999999999999999999999999999887
Q ss_pred cccCccCCcccccccccccCCChhhHHHHHHHHHHH-HHHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCC
Q 011424 194 AQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREA 272 (486)
Q Consensus 194 ~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (486)
.+. ..+||+.+ .+.++..++. ++...+.+|+|+..+....++... +..++..++.+++.....
T Consensus 176 ~~~------~~~w~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 239 (447)
T d1pw4a_ 176 MAW------FNDWHAAL---------YMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKN-DYPDDYNEKAEQELTAKQ 239 (447)
T ss_dssp HHH------TCCSTTCT---------HHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCC-C-------------CCTH
T ss_pred hhh------hhcccccc---------hhhhhhHHHHHHHHHHhcccchhhcccchhhhhhh-hcccchhhccccccchhh
Confidence 761 22455444 4544444443 444555666655433222111111 111111111111122223
Q ss_pred CcccccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011424 273 TPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG 352 (486)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (486)
...+..++++.++......++..........+.+.|+.+. .+++..+.+.......+..+++.+ ..+++.||.+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~ 313 (447)
T d1pw4a_ 240 IFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEV-----KHFALDKSSWAYFLYEYAGIPGTL-LCGWMSDKVF 313 (447)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTB-----SCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTS
T ss_pred HHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccc-----cccccchhhhhhhcchhhhhhhhh-hhhhhhhhcc
Confidence 3456678889988888888887777777777888877655 788999999999999999999988 5566666666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHH-
Q 011424 353 PIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLF- 431 (486)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g- 431 (486)
+++........................ .......+..+..++......+....+..|.+|++.||++.|+.+...+++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g 392 (447)
T d1pw4a_ 314 RGNRGATGVFFMTLVTIATIVYWMNPA-GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGG 392 (447)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTTSCCT-TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 544333322222222222211111111 122223333344455556667778888899999999999999999988875
Q ss_pred HHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhc
Q 011424 432 KAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK 478 (486)
Q Consensus 432 ~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~ 478 (486)
..++|.+.|.+.|.. |+...|++.+++.+++.++...
T Consensus 393 ~~~~~~~~g~~~~~~----------g~~~~~~~~~~~~~~~~~~~~~ 429 (447)
T d1pw4a_ 393 SVAASAIVGYTVDFF----------GWDGGFMVMIGGSILAVILLIV 429 (447)
T ss_dssp HHHHHHHHHHHHHSS----------CSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh----------ChHHHHHHHHHHHHHHHHHHHH
Confidence 566899999999887 7888888887777777665544
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=1.1e-29 Score=240.70 Aligned_cols=383 Identities=11% Similarity=0.083 Sum_probs=256.7
Q ss_pred hHHHHHHHHHHHhhhhhhhhcccHHH-HHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHH
Q 011424 41 TELFSIWIIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT 119 (486)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~ 119 (486)
++++.+.+..++..+..+...|.+|. +.+++|.|+.+ .|++.+++.++..++++++|+++||+||||+++++.
T Consensus 7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~------~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~ 80 (417)
T d1pv7a_ 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSD------TGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWII 80 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH------HHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence 56778888888888888999999986 55678999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccchHHHHHHH----HHHHHhhccchhh-HHHHHhhhcc--chhhhhHhhHHHHHhhhhHHHHhhhhhh
Q 011424 120 ASVVIFNTLFGLSVNFWMAVLT----RFLLGSLNGLLGP-IKAYACEIFR--EEHQALGLSTVSTAWGIGLIIGPALGGF 192 (486)
Q Consensus 120 ~~~~~~~~~~~~a~~~~~l~~~----r~l~G~~~g~~~~-~~~~i~~~~~--~~~r~~~~~~~~~~~~~g~~ig~~l~~~ 192 (486)
.+..++..+..+.++....... +.+.+.+.+.... ......+..+ .+++.+..+........+..++|.+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (417)
T d1pv7a_ 81 TGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGI 160 (417)
T ss_dssp HHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccc
Confidence 9999999888887766655443 3443433333332 3333333332 2345567778888889999999999999
Q ss_pred hcccCccCCcccccccccccCCChhhHHHHHHHHHHHHHHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCC
Q 011424 193 LAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREA 272 (486)
Q Consensus 193 l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (486)
+.+ ...++..........+...+..+..+|+++..++++++++.. ++...
T Consensus 161 l~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~ 210 (417)
T d1pv7a_ 161 MFT----------------INNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANH--------------SAFSL 210 (417)
T ss_dssp HHH----------------HCHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSCC--------------CCCCH
T ss_pred ccc----------------ccccccccchhhHHHHHHHHHHHHhcccccchhhhhhhhhhc--------------ccccc
Confidence 886 111222223333334444555556666655443322111110 01111
Q ss_pred CcccccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011424 273 TPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG 352 (486)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (486)
....+..+++..+......................+... .....+.+....+.......++..++.. ..+++.||.+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~r~~ 287 (417)
T d1pv7a_ 211 KLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTS--FFATGEQGTRVFGYVTTMGELLNASIMF-FAPLIINRIG 287 (417)
T ss_dssp HHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHHHHHHHHHHHT-THHHHHHHHC
T ss_pred cccccccccccccchhhhhHHHHHHHHhhhccccccccc--cccccccchhhhcccccccccccccchh-hhhhhhcccc
Confidence 112233344443333333333333323333333333322 2223456677778888888888888887 6666777779
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHH-HHHHHH
Q 011424 353 PIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAM-TGMSLF 431 (486)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~~g 431 (486)
+++.+..+..+..+....+.+... .+ ...+..++.+++.....+....+..|.+|++.|+++.|+.. ....+|
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 361 (417)
T d1pv7a_ 288 GKNALLLAGTIMSVRIIGSSFATS-----AL-EVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLA 361 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCC-----HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHH
T ss_pred cccchhhhHHHHHHhhhccccccc-----cc-hhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHH
Confidence 999888887777766665544321 12 23344445555666777888899999999999999999865 557799
Q ss_pred HHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhc
Q 011424 432 KAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK 478 (486)
Q Consensus 432 ~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~ 478 (486)
..++|.+.|++.|.. |++.+|++.+++.++..++..+
T Consensus 362 ~~i~~~~~G~l~~~~----------g~~~~~~~~~~~~~~~~~~~~~ 398 (417)
T d1pv7a_ 362 MIFMSVLAGNMYESI----------GFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HHHHHHHHHHHHHHH----------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----------CHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998 8999999988888887776665
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.52 E-value=5.9e-15 Score=138.21 Aligned_cols=140 Identities=18% Similarity=0.136 Sum_probs=118.2
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhh
Q 011424 84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEI 162 (486)
Q Consensus 84 ~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~ 162 (486)
.+...+...++..++..+.+++.||+|||+.+.++.++.+++.++..+.++.+.+++..++.|++.+...+. .+++.|.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 340 (417)
T d1pv7a_ 261 FGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQ 340 (417)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888889999999999999999999999999999999999999999999999999999999998888776 9999999
Q ss_pred ccchhhhhHhhHH-HHHhhhhHHHHhhhhhhhcccCccCCcccccccccccCCChhhHHHHHHHHHHHHH-HHHhcCCc
Q 011424 163 FREEHQALGLSTV-STAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPET 239 (486)
Q Consensus 163 ~~~~~r~~~~~~~-~~~~~~g~~ig~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~ 239 (486)
+|+++|++..+.. +....+|..++|.++|++.+ .+| ++..+.+.++..++..+ ..+.++++
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~-------~~g---------~~~~~~~~~~~~~~~~~~~~~~l~~~ 403 (417)
T d1pv7a_ 341 FEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE-------SIG---------FQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp SCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHH-------HHC---------HHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHC---------HHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 9999999999975 55677999999999999998 344 44444666665555443 44445443
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.40 E-value=7.2e-13 Score=125.42 Aligned_cols=149 Identities=11% Similarity=0.049 Sum_probs=109.7
Q ss_pred hHHHHHHHHHHHhhhhhhhhcccHHHH-HHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHH
Q 011424 41 TELFSIWIIVLCTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT 119 (486)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~ 119 (486)
+.++.+....++............|.+ .+.++.+..+ .++..+...++..++.++.|++.||++||+......
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 322 (447)
T d1pw4a_ 249 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDK------SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGV 322 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred chHHHHHHHhhhhhhhhhcchhhhhhhcccccccccch------hhhhhhcchhhhhhhhhhhhhhhhhccccccccccc
Confidence 444445555555555555555556654 4557888888 899999999999999999999999999876544433
Q ss_pred HHHHH---HHHHHhc--cchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhh-hHHHHhhhhhh
Q 011424 120 ASVVI---FNTLFGL--SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGI-GLIIGPALGGF 192 (486)
Q Consensus 120 ~~~~~---~~~~~~~--a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~ig~~l~~~ 192 (486)
....+ +..+... ..+.+...+.-++.|++.+...+. ..+..|.+|+++|+++.|+.+....+ |.+++|.+.++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~ 402 (447)
T d1pw4a_ 323 FFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY 402 (447)
T ss_dssp HHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33222 2222222 457788888888889887776665 88999999999999999998877766 56778999999
Q ss_pred hcc
Q 011424 193 LAQ 195 (486)
Q Consensus 193 l~~ 195 (486)
+.+
T Consensus 403 ~~~ 405 (447)
T d1pw4a_ 403 TVD 405 (447)
T ss_dssp HHH
T ss_pred HHH
Confidence 998
|