Citrus Sinensis ID: 011427

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480------
MAPMKGVLSLQRASLVRCYSERLSVGLRSFSTQGASTASTPQPPPPPPPPEKTHFGGLKDEDRIFTNLYGMHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRKNNSGTKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKEHAERELLEATA
ccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHcccccccccHHHHHHHccHHHHHHHHHccHHHHHHHHHHccccccccccccccccccccccccccccEEEEEccccccccccccHHHHcccccHHHHHHHHHHHHHcccEEEEEEEcccHHHHHHHHHHHHHHHHccccccccccccccEEEEEEcccccEEccHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHccHHHHHccccccccccEEEEEEccccccccEEEcccccHHHHHHHHccccccccccEEEEEccccccccccccccccccccHHHHHHHHHcccccEEEEEcccccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHcHHHHHHHHHHccccHHHHccc
ccccccHHccccHHHHHHHHHHHcHcccccccccHHHcccccccccccccccccccccccHHHHHHHccccccccHHHHHHcccHHHHHHHHHcccHHHHHHHHHcccccccccccccccEEEccccccccccEEEEEEcccccccccccHHHHHccccHHHHHHHHHHHHHcccEEEEEEEHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEccccEEEccHHHHHHHHHcccccccccccccccccEEccccccccccEEEEEcHHHHHccHHHHHHccccccccEEEEEEEccccccccEEHHccccHHHHHHHHccccccccHHHEEEcccccccccccHHHHHHHHHcHHHHHHcccccccEEEEEEcccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHcc
MAPMKGVLSLQRASLVRCYSERLSVglrsfstqgastastpqppppppppekthfgglkdedriftnlygmhdpflkgamkrgdwhrtKDLVLKGADWIVNEVkksglrgrggagfpsglkwsfmpkvsdgrpsylvvnadesepgtckdreimrhdphkllegcliagVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGllgknacgsgydfdvhihygagayiCGEETALLESlegkqgkprlkppfpanaglygcpttvtnvetvavsptilrrgpdwfasfgrknnsgtklfcvsghvnkpctveeemsIPLKELidrhcggvrggwdnllavipggssvpllpkhicddvLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFykhescgqctpcregtGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHticalgdaaawpvqglIRHFRPELERRIKEHAERELLEATA
mapmkgvlslqRASLVRCYSERLSVGLRSFSTQGAStastpqpppppppPEKTHFGGLKDEDRIFTNLYGMHDPFLKGAMKRGDWHRTKDLVLKGADWIVNevkksglrgrggagfpsglkwsfmpkVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRKNNSGTKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYfykhescgqctpCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKEHAErelleata
MAPMKGVLSLQRASLVRCYSERLSVGLRSFSTQGASTASTpqppppppppEKTHFGGLKDEDRIFTNLYGMHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRKNNSGTKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKEHAERELLEATA
***********RASLVRCYSERLSV***********************************EDRIFTNLYGMHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVS****SYLVV**************IMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLE**************FPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRKNNSGTKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRP*******************
*******************************************************GGLKDEDRIFTNLYGMHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRKNNSGTKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKEHAERE******
MAPMKGVLSLQRASLVRCYSERLSVGLRSF**********************THFGGLKDEDRIFTNLYGMHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRKNNSGTKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKEHAERELLEATA
******VLSLQRASLVRCYSERL*******************************FGGLKDEDRIFTNLYGMHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRKNNSGTKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKEHAERE******
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAPMKGVLSLQRASLVRCYSERLSVGLRSFSTQGASTASTPQPPPPPPPPEKTHFGGLKDEDRIFTNLYGMHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRKNNSGTKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKEHAERELLEATA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query486 2.2.26 [Sep-21-2011]
Q9FNN5486 NADH dehydrogenase [ubiqu yes no 1.0 1.0 0.915 0.0
Q54I90479 NADH dehydrogenase [ubiqu yes no 0.930 0.943 0.730 0.0
Q92406496 NADH-ubiquinone oxidoredu yes no 0.905 0.887 0.724 0.0
P24917493 NADH-ubiquinone oxidoredu N/A no 0.890 0.878 0.738 0.0
Q91YT0464 NADH dehydrogenase [ubiqu yes no 0.884 0.926 0.748 0.0
P25708464 NADH dehydrogenase [ubiqu yes no 0.872 0.913 0.761 0.0
P49821464 NADH dehydrogenase [ubiqu yes no 0.874 0.915 0.755 0.0
Q0MQI4464 NADH dehydrogenase [ubiqu N/A no 0.874 0.915 0.755 0.0
Q0MQI6464 NADH dehydrogenase [ubiqu yes no 0.874 0.915 0.752 0.0
Q8HXQ9464 NADH dehydrogenase [ubiqu N/A no 0.874 0.915 0.752 0.0
>sp|Q9FNN5|NDUV1_ARATH NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial OS=Arabidopsis thaliana GN=At5g08530 PE=2 SV=1 Back     alignment and function desciption
 Score =  878 bits (2268), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/486 (91%), Positives = 472/486 (97%)

Query: 1   MAPMKGVLSLQRASLVRCYSERLSVGLRSFSTQGASTASTPQPPPPPPPPEKTHFGGLKD 60
           MAP++G+L LQRA  +   S RL+  LRSFSTQ AST++TPQPPPPPPPPEKTHFGGLKD
Sbjct: 1   MAPVRGILGLQRAVSIWKESNRLTPALRSFSTQAASTSTTPQPPPPPPPPEKTHFGGLKD 60

Query: 61  EDRIFTNLYGMHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGL 120
           EDRIFTNLYG+HDPFLKGAMKRGDWHRTKDLVLKG DWIVNE+KKSGLRGRGGAGFPSGL
Sbjct: 61  EDRIFTNLYGLHDPFLKGAMKRGDWHRTKDLVLKGTDWIVNEMKKSGLRGRGGAGFPSGL 120

Query: 121 KWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIY 180
           KWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIY
Sbjct: 121 KWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIY 180

Query: 181 IRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLE 240
           IRGEYVNER NLE+AR+EAYAAGLLGKNACGSGYDF+V+IH+GAGAYICGEETALLESLE
Sbjct: 181 IRGEYVNERLNLEKARREAYAAGLLGKNACGSGYDFEVYIHFGAGAYICGEETALLESLE 240

Query: 241 GKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRKNNSGTKLFC 300
           GKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGP+WF+SFGRKNN+GTKLFC
Sbjct: 241 GKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFSSFGRKNNAGTKLFC 300

Query: 301 VSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLM 360
           +SGHVNKPCTVEEEMSIPLKELI+RHCGGVRGGWDNLLA+IPGGSSVPL+PK+IC+DVLM
Sbjct: 301 ISGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAIIPGGSSVPLIPKNICEDVLM 360

Query: 361 DYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIME 420
           D+DALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIME
Sbjct: 361 DFDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIME 420

Query: 421 RLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKEHAERE 480
           R+KVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRI+E AERE
Sbjct: 421 RMKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIRERAERE 480

Query: 481 LLEATA 486
           LL+A A
Sbjct: 481 LLQAAA 486
Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 6EC: .EC: 9EC: 9EC: .EC: 3
>sp|Q54I90|NDUV1_DICDI NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial OS=Dictyostelium discoideum GN=ndufv1 PE=2 SV=1 Back     alignment and function description
>sp|Q92406|NDUV1_ASPNG NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial OS=Aspergillus niger GN=NUO51 PE=3 SV=1 Back     alignment and function description
>sp|P24917|NDUV1_NEUCR NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=nuo-51 PE=2 SV=2 Back     alignment and function description
>sp|Q91YT0|NDUV1_MOUSE NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial OS=Mus musculus GN=Ndufv1 PE=1 SV=1 Back     alignment and function description
>sp|P25708|NDUV1_BOVIN NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial OS=Bos taurus GN=NDUFV1 PE=1 SV=2 Back     alignment and function description
>sp|P49821|NDUV1_HUMAN NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial OS=Homo sapiens GN=NDUFV1 PE=1 SV=4 Back     alignment and function description
>sp|Q0MQI4|NDUV1_PONPY NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial OS=Pongo pygmaeus GN=NDUFV1 PE=2 SV=1 Back     alignment and function description
>sp|Q0MQI6|NDUV1_PANTR NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial OS=Pan troglodytes GN=NDUFV1 PE=2 SV=1 Back     alignment and function description
>sp|Q8HXQ9|NDUV1_MACFA NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial OS=Macaca fascicularis GN=NDUFV1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query486
255547796486 NADH-ubiquinone oxidoreductase flavoprot 1.0 1.0 0.936 0.0
357439369568 NADH-quinone oxidoreductase subunit F [M 0.991 0.848 0.933 0.0
224110746485 predicted protein [Populus trichocarpa] 0.997 1.0 0.938 0.0
356533373482 PREDICTED: NADH dehydrogenase [ubiquinon 0.989 0.997 0.927 0.0
356501803482 PREDICTED: NADH dehydrogenase [ubiquinon 0.989 0.997 0.927 0.0
639834487 NADH dehydrogenase [Solanum tuberosum] 1.0 0.997 0.907 0.0
226532265504 NADH-ubiquinone oxidoreductase 51 kDa su 0.944 0.910 0.949 0.0
357111131535 PREDICTED: NADH dehydrogenase [ubiquinon 0.956 0.869 0.935 0.0
326490041505 predicted protein [Hordeum vulgare subsp 0.983 0.946 0.920 0.0
225462161487 PREDICTED: NADH dehydrogenase [ubiquinon 1.0 0.997 0.915 0.0
>gi|255547796|ref|XP_002514955.1| NADH-ubiquinone oxidoreductase flavoprotein, putative [Ricinus communis] gi|223546006|gb|EEF47509.1| NADH-ubiquinone oxidoreductase flavoprotein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  930 bits (2404), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/486 (93%), Positives = 472/486 (97%)

Query: 1   MAPMKGVLSLQRASLVRCYSERLSVGLRSFSTQGASTASTPQPPPPPPPPEKTHFGGLKD 60
           MAP++G+ +LQRA+L+R  S+RL+VG+RSFST+   +A + QP PPPPPPEKTHFGGLKD
Sbjct: 1   MAPIRGIFNLQRAALIRRQSDRLAVGIRSFSTEATKSAGSSQPLPPPPPPEKTHFGGLKD 60

Query: 61  EDRIFTNLYGMHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGL 120
           EDRIFTNLYG+HDPFLKGAMKRGDW+RTKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGL
Sbjct: 61  EDRIFTNLYGLHDPFLKGAMKRGDWYRTKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGL 120

Query: 121 KWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIY 180
           KWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIY
Sbjct: 121 KWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIY 180

Query: 181 IRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLE 240
           IRGEYVNER NLERAR+EAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLE
Sbjct: 181 IRGEYVNERINLERARKEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLE 240

Query: 241 GKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRKNNSGTKLFC 300
           GKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGP+WFASFGRKNNSGTKLFC
Sbjct: 241 GKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTKLFC 300

Query: 301 VSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLM 360
           VSGHVNKPCTVEEEMSIPLKELI+RHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLM
Sbjct: 301 VSGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLM 360

Query: 361 DYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIME 420
           DYDALKAV SGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGT WLWMIME
Sbjct: 361 DYDALKAVTSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTPWLWMIME 420

Query: 421 RLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKEHAERE 480
           RLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKE AERE
Sbjct: 421 RLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKERAERE 480

Query: 481 LLEATA 486
           LLEA A
Sbjct: 481 LLEAAA 486

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|357439369|ref|XP_003589961.1| NADH-quinone oxidoreductase subunit F [Medicago truncatula] gi|355479009|gb|AES60212.1| NADH-quinone oxidoreductase subunit F [Medicago truncatula] Back     alignment and taxonomy information
>gi|224110746|ref|XP_002315622.1| predicted protein [Populus trichocarpa] gi|222864662|gb|EEF01793.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356533373|ref|XP_003535239.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like isoform 1 [Glycine max] gi|356533375|ref|XP_003535240.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|356501803|ref|XP_003519713.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like [Glycine max] Back     alignment and taxonomy information
>gi|639834|emb|CAA58823.1| NADH dehydrogenase [Solanum tuberosum] Back     alignment and taxonomy information
>gi|226532265|ref|NP_001148767.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Zea mays] gi|195621992|gb|ACG32826.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Zea mays] Back     alignment and taxonomy information
>gi|357111131|ref|XP_003557368.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|326490041|dbj|BAJ94094.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326490708|dbj|BAJ90021.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information
>gi|225462161|ref|XP_002266661.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query486
TAIR|locus:2159522486 CI51 "51 kDa subunit of comple 1.0 1.0 0.895 1.3e-242
FB|FBgn0031771474 CG9140 [Drosophila melanogaste 0.880 0.902 0.778 1.1e-188
ZFIN|ZDB-GENE-051127-15479 zgc:123290 "zgc:123290" [Danio 0.880 0.893 0.780 6.2e-188
DICTYBASE|DDB_G0288875479 ndufv1 "NADH dehydrogenase ubi 0.930 0.943 0.730 5e-186
WB|WBGene00003831479 nuo-1 [Caenorhabditis elegans 0.897 0.910 0.761 1e-185
UNIPROTKB|E2R514464 NDUFV1 "Uncharacterized protei 0.897 0.939 0.745 1.6e-182
UNIPROTKB|P25708464 NDUFV1 "NADH dehydrogenase [ub 0.882 0.924 0.752 4.2e-182
UNIPROTKB|G3V0I5457 NDUFV1 "NADH dehydrogenase (Ub 0.882 0.938 0.748 8.7e-182
UNIPROTKB|P49821464 NDUFV1 "NADH dehydrogenase [ub 0.882 0.924 0.748 8.7e-182
UNIPROTKB|F1RVN1464 NDUFV1 "Uncharacterized protei 0.878 0.920 0.756 1.1e-181
TAIR|locus:2159522 CI51 "51 kDa subunit of complex I" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2338 (828.1 bits), Expect = 1.3e-242, P = 1.3e-242
 Identities = 435/486 (89%), Positives = 462/486 (95%)

Query:     1 MAPMKGVLSLQRASLVRCYSERLSVGLRSFSTQGASTASTXXXXXXXXXXEKTHFGGLKD 60
             MAP++G+L LQRA  +   S RL+  LRSFSTQ AST++T          EKTHFGGLKD
Sbjct:     1 MAPVRGILGLQRAVSIWKESNRLTPALRSFSTQAASTSTTPQPPPPPPPPEKTHFGGLKD 60

Query:    61 EDRIFTNLYGMHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGL 120
             EDRIFTNLYG+HDPFLKGAMKRGDWHRTKDLVLKG DWIVNE+KKSGLRGRGGAGFPSGL
Sbjct:    61 EDRIFTNLYGLHDPFLKGAMKRGDWHRTKDLVLKGTDWIVNEMKKSGLRGRGGAGFPSGL 120

Query:   121 KWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIY 180
             KWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIY
Sbjct:   121 KWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIY 180

Query:   181 IRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLE 240
             IRGEYVNER NLE+AR+EAYAAGLLGKNACGSGYDF+V+IH+GAGAYICGEETALLESLE
Sbjct:   181 IRGEYVNERLNLEKARREAYAAGLLGKNACGSGYDFEVYIHFGAGAYICGEETALLESLE 240

Query:   241 GKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRKNNSGTKLFC 300
             GKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGP+WF+SFGRKNN+GTKLFC
Sbjct:   241 GKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFSSFGRKNNAGTKLFC 300

Query:   301 VSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLM 360
             +SGHVNKPCTVEEEMSIPLKELI+RHCGGVRGGWDNLLA+IPGGSSVPL+PK+IC+DVLM
Sbjct:   301 ISGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAIIPGGSSVPLIPKNICEDVLM 360

Query:   361 DYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIME 420
             D+DALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIME
Sbjct:   361 DFDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIME 420

Query:   421 RLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKEHAERE 480
             R+KVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRI+E AERE
Sbjct:   421 RMKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIRERAERE 480

Query:   481 LLEATA 486
             LL+A A
Sbjct:   481 LLQAAA 486
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=ISS
GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA;ISS
GO:0010181 "FMN binding" evidence=IEA
GO:0016651 "oxidoreductase activity, acting on NAD(P)H" evidence=IEA
GO:0051287 "NAD binding" evidence=IEA
GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA
GO:0000902 "cell morphogenesis" evidence=RCA
GO:0006499 "N-terminal protein myristoylation" evidence=RCA
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA
GO:0009853 "photorespiration" evidence=RCA
GO:0016049 "cell growth" evidence=RCA
GO:0048193 "Golgi vesicle transport" evidence=RCA
GO:0051788 "response to misfolded protein" evidence=RCA
GO:0080129 "proteasome core complex assembly" evidence=RCA
FB|FBgn0031771 CG9140 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-051127-15 zgc:123290 "zgc:123290" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0288875 ndufv1 "NADH dehydrogenase ubiquinone flavoprotein 1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
WB|WBGene00003831 nuo-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|E2R514 NDUFV1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P25708 NDUFV1 "NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|G3V0I5 NDUFV1 "NADH dehydrogenase (Ubiquinone) flavoprotein 1, 51kDa, isoform CRA_c" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P49821 NDUFV1 "NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1RVN1 NDUFV1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O07948NUOF_RHOCA1, ., 6, ., 9, 9, ., 50.71940.85800.9675yesno
P24917NDUV1_NEUCR1, ., 6, ., 9, 9, ., 30.73850.89090.8782N/Ano
A8GQT6NUOF_RICRS1, ., 6, ., 9, 9, ., 50.68800.86000.9928yesno
Q9ZE33NUOF_RICPR1, ., 6, ., 9, 9, ., 50.70500.85390.9857yesno
Q91YT0NDUV1_MOUSE1, ., 6, ., 9, 9, ., 30.74880.88470.9267yesno
P25708NDUV1_BOVIN1, ., 6, ., 9, 9, ., 30.76170.87240.9137yesno
O94500NDUV1_SCHPO1, ., 6, ., 9, 9, ., 30.38510.84770.9115yesno
Q8HXQ9NDUV1_MACFA1, ., 6, ., 9, 9, ., 30.75290.87440.9159N/Ano
A8GM77NUOF_RICAH1, ., 6, ., 9, 9, ., 50.69760.86000.9881yesno
P56912NUOF1_RHIME1, ., 6, ., 9, 9, ., 50.72790.86000.9631yesno
Q9XAQ9NUOF_STRCO1, ., 6, ., 9, 9, ., 50.51320.76540.8285yesno
P29913NQO1_PARDE1, ., 6, ., 9, 9, ., 50.70740.85800.9675yesno
Q1RHA0NUOF_RICBR1, ., 6, ., 9, 9, ., 50.70740.85590.9976yesno
Q56222NQO1_THET81, ., 6, ., 9, 9, ., 50.50660.75510.8378yesno
Q92JB2NUOF_RICCN1, ., 6, ., 9, 9, ., 50.69040.86000.9928yesno
Q92406NDUV1_ASPNG1, ., 6, ., 9, 9, ., 30.72480.90530.8870yesno
Q8K9Y3NUOF_BUCAP1, ., 6, ., 9, 9, ., 50.40150.80240.8724yesno
P65567NUOF_MYCTU1, ., 6, ., 9, 9, ., 50.54520.75720.8269yesno
P65568NUOF_MYCBO1, ., 6, ., 9, 9, ., 50.54520.75720.8269yesno
Q89AU2NUOF_BUCBP1, ., 6, ., 9, 9, ., 50.41800.82300.9009yesno
A8F0M0NUOF_RICM51, ., 6, ., 9, 9, ., 50.70.86000.9928yesno
Q4UKA6NUOF_RICFE1, ., 6, ., 9, 9, ., 50.70260.85390.9834yesno
P49821NDUV1_HUMAN1, ., 6, ., 9, 9, ., 30.75520.87440.9159yesno
Q9FNN5NDUV1_ARATH1, ., 6, ., 9, 9, ., 30.91561.01.0yesno
Q0MQI4NDUV1_PONPY1, ., 6, ., 9, 9, ., 30.75520.87440.9159N/Ano
Q0MQI5NDUV1_GORGO1, ., 6, ., 9, 9, ., 30.75050.87440.9159N/Ano
Q0MQI6NDUV1_PANTR1, ., 6, ., 9, 9, ., 30.75290.87440.9159yesno
Q54I90NDUV1_DICDI1, ., 6, ., 9, 9, ., 30.73060.93000.9436yesno
A8EXI1NUOF_RICCK1, ., 6, ., 9, 9, ., 50.69710.85390.9880yesno
A8GYE0NUOF_RICB81, ., 6, ., 9, 9, ., 50.70740.85590.9976yesno
Q68XY3NUOF_RICTY1, ., 6, ., 9, 9, ., 50.70260.85390.9857yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.6.990.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_X0463
hypothetical protein (485 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_fgenesh4_pm.C_LG_V0527
hypothetical protein (254 aa)
• ••••• 0.974
estExt_Genewise1_v1.C_LG_II0234
hypothetical protein (254 aa)
• ••••• 0.973
grail3.0635000201
hypothetical protein (190 aa)
• ••••• 0.958
estExt_Genewise1_v1.C_LG_IV3721
hypothetical protein (737 aa)
• ••••• 0.948
eugene3.00002200
hypothetical protein (740 aa)
• ••••• 0.946
estExt_fgenesh4_pm.C_LG_IX0254
hypothetical protein (222 aa)
• ••••• 0.929
fgenesh4_kg.C_LG_IV000054
hypothetical protein (222 aa)
• ••••• 0.918
ndhE
NADH-plastoquinone oxidoreductase chain 4L ; NDH shuttles electrons from NAD(P)H-plastoquinone, [...] (101 aa)
•  • •• 0.892
eugene3.00061644
SubName- Full=Putative uncharacterized protein; (214 aa)
• ••••• 0.888
gw1.5262.1.1
annotation not avaliable (234 aa)
•  • •• 0.868

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query486
PLN03132461 PLN03132, PLN03132, NADH dehydrogenase (ubiquinone 0.0
PRK13596433 PRK13596, PRK13596, NADH dehydrogenase I subunit F 0.0
PTZ00304461 PTZ00304, PTZ00304, NADH dehydrogenase [ubiquinone 0.0
COG1894424 COG1894, NuoF, NADH:ubiquinone oxidoreductase, NAD 0.0
TIGR01959411 TIGR01959, nuoF_fam, NADH-quinone oxidoreductase, 0.0
PRK11278448 PRK11278, PRK11278, NADH dehydrogenase I subunit F 1e-115
pfam01512150 pfam01512, Complex1_51K, Respiratory-chain NADH de 2e-55
smart0092846 smart00928, NADH_4Fe-4S, NADH-ubiquinone oxidoredu 2e-19
pfam1058946 pfam10589, NADH_4Fe-4S, NADH-ubiquinone oxidoreduc 3e-18
TIGR01945435 TIGR01945, rnfC, electron transport complex, RnfAB 8e-08
pfam1053152 pfam10531, SLBB, SLBB domain 2e-07
COG4656529 COG4656, RnfC, Predicted NADH:ubiquinone oxidoredu 9e-07
PRK05035 695 PRK05035, PRK05035, electron transport complex pro 6e-04
>gnl|CDD|178678 PLN03132, PLN03132, NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional Back     alignment and domain information 
 Score =  988 bits (2555), Expect = 0.0
 Identities = 436/461 (94%), Positives = 449/461 (97%)

Query: 26  GLRSFSTQGASTASTPQPPPPPPPPEKTHFGGLKDEDRIFTNLYGMHDPFLKGAMKRGDW 85
            LR+FSTQ A+TA+TPQPPPPPPPPEKTHFGGLKDEDRIFTNLYG+HDPFLKGAMKRGDW
Sbjct: 1   ALRAFSTQAAATAATPQPPPPPPPPEKTHFGGLKDEDRIFTNLYGLHDPFLKGAMKRGDW 60

Query: 86  HRTKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEP 145
           HRTKDLVLKG DWIVNE+KKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEP
Sbjct: 61  HRTKDLVLKGPDWIVNEMKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEP 120

Query: 146 GTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLL 205
           GTCKDREIMRHDPHKLLEGCLIAGVGMRA AAYIYIRGEYVNER NLERAR EAYAAGLL
Sbjct: 121 GTCKDREIMRHDPHKLLEGCLIAGVGMRARAAYIYIRGEYVNERLNLERARHEAYAAGLL 180

Query: 206 GKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTV 265
           GKNACGSGYDFDV+IHYGAGAYICGEETALLESLEGKQGKPRLKPPFPAN GLYGCPTTV
Sbjct: 181 GKNACGSGYDFDVYIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANVGLYGCPTTV 240

Query: 266 TNVETVAVSPTILRRGPDWFASFGRKNNSGTKLFCVSGHVNKPCTVEEEMSIPLKELIDR 325
           TNVETVAVSPTILRRGP+WFASFGRKNN+GTKLFC+SGHVNKPCTVEEEMSIPLKELI+R
Sbjct: 241 TNVETVAVSPTILRRGPEWFASFGRKNNAGTKLFCISGHVNKPCTVEEEMSIPLKELIER 300

Query: 326 HCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLMDYDALKAVQSGLGTAAVIVMDKSTD 385
           HCGGVRGGWDNLLA+IPGGSSVPLLPK ICDDVLMD+DALKAVQSGLGTAAVIVMDKSTD
Sbjct: 301 HCGGVRGGWDNLLAIIPGGSSVPLLPKKICDDVLMDFDALKAVQSGLGTAAVIVMDKSTD 360

Query: 386 VVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGH 445
           VVDAIARLSYFYKHESCGQCTPCREGTGWLW IMER+KVGNAKLEEIDMLQEVTKQIEGH
Sbjct: 361 VVDAIARLSYFYKHESCGQCTPCREGTGWLWDIMERMKVGNAKLEEIDMLQEVTKQIEGH 420

Query: 446 TICALGDAAAWPVQGLIRHFRPELERRIKEHAERELLEATA 486
           TICALGDAAAWPVQGLIRHFRPELERRIKE AERELL A A
Sbjct: 421 TICALGDAAAWPVQGLIRHFRPELERRIKERAERELLAAAA 461

Length = 461
>gnl|CDD|237441 PRK13596, PRK13596, NADH dehydrogenase I subunit F; Provisional Back     alignment and domain information
>gnl|CDD|185547 PTZ00304, PTZ00304, NADH dehydrogenase [ubiquinone] flavoprotein 1; Provisional Back     alignment and domain information
>gnl|CDD|224806 COG1894, NuoF, NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|131014 TIGR01959, nuoF_fam, NADH-quinone oxidoreductase, F subunit Back     alignment and domain information
>gnl|CDD|236891 PRK11278, PRK11278, NADH dehydrogenase I subunit F; Provisional Back     alignment and domain information
>gnl|CDD|216542 pfam01512, Complex1_51K, Respiratory-chain NADH dehydrogenase 51 Kd subunit Back     alignment and domain information
>gnl|CDD|197996 smart00928, NADH_4Fe-4S, NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Back     alignment and domain information
>gnl|CDD|204521 pfam10589, NADH_4Fe-4S, NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Back     alignment and domain information
>gnl|CDD|233649 TIGR01945, rnfC, electron transport complex, RnfABCDGE type, C subunit Back     alignment and domain information
>gnl|CDD|220798 pfam10531, SLBB, SLBB domain Back     alignment and domain information
>gnl|CDD|227003 COG4656, RnfC, Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 486
COG1894424 NuoF NADH:ubiquinone oxidoreductase, NADH-binding 100.0
PLN03132461 NADH dehydrogenase (ubiquinone) flavoprotein 1; Pr 100.0
KOG2658478 consensus NADH:ubiquinone oxidoreductase, NDUFV1/5 100.0
PTZ00304461 NADH dehydrogenase [ubiquinone] flavoprotein 1; Pr 100.0
PRK13596433 NADH dehydrogenase I subunit F; Provisional 100.0
PRK11278448 NADH dehydrogenase I subunit F; Provisional 100.0
TIGR01959411 nuoF_fam NADH-quinone oxidoreductase, F subunit. T 100.0
PRK05035 695 electron transport complex protein RnfC; Provision 100.0
TIGR01945435 rnfC electron transport complex, RnfABCDGE type, C 100.0
COG4656529 RnfC Predicted NADH:ubiquinone oxidoreductase, sub 100.0
PRK05352448 Na(+)-translocating NADH-quinone reductase subunit 100.0
TIGR01936447 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translo 100.0
PF01512151 Complex1_51K: Respiratory-chain NADH dehydrogenase 100.0
PF1058946 NADH_4Fe-4S: NADH-ubiquinone oxidoreductase-F iron 99.52
PF1053159 SLBB: SLBB domain; InterPro: IPR019554 The soluble 98.37
COG1726447 NqrA Na+-transporting NADH:ubiquinone oxidoreducta 97.44
PF05896257 NQRA: Na(+)-translocating NADH-quinone reductase s 96.63
PF1197351 NQRA_SLBB: NQRA C-terminal domain; InterPro: IPR02 95.14
PRK09853 1019 putative selenate reductase subunit YgfK; Provisio 93.68
TIGR03315 1012 Se_ygfK putative selenate reductase, YgfK subunit. 92.77
TIGR03027165 pepcterm_export putative polysaccharide export pro 91.8
PRK08640249 sdhB succinate dehydrogenase iron-sulfur subunit; 87.24
TIGR03028239 EpsE polysaccharide export protein EpsE. Sequences 86.41
TIGR03028239 EpsE polysaccharide export protein EpsE. Sequences 86.37
TIGR00273432 iron-sulfur cluster-binding protein. Members of th 86.28
COG1596239 Wza Periplasmic protein involved in polysaccharide 82.87
TIGR03290144 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, s 80.78
>COG1894 NuoF NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Energy production and conversion] Back     alignment and domain information 
Probab=100.00  E-value=1.6e-139  Score=1060.06  Aligned_cols=418  Identities=59%  Similarity=0.990  Sum_probs=404.0

Q ss_pred             cCCCCcce-EEeccccccCCChhHHHhcCCchhcHHHH-hcChHHHHHHHHHccccCCCCCCCccccccccCCCCCCCCC
Q 011427           56 GGLKDEDR-IFTNLYGMHDPFLKGAMKRGDWHRTKDLV-LKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRP  133 (486)
Q Consensus        56 ~~~~~~~~-i~~~~~g~~~~~~~~~~~~ggy~~l~~~~-~~~~e~ii~~i~~sGl~G~GGAGFPT~~K~~~~~~~~~~~~  133 (486)
                      +.+++|.| +|.+.....+|+||+|+++|||++|++++ +|+|++||++||+|||||||||||||++||++++++ ....
T Consensus         4 ~~~~~~~r~~~~~~~~~~~~~l~~y~a~ggy~~l~kal~~m~p~~II~~Vk~SGLRGRGGAGFpTGlKWsfm~k~-~~~~   82 (424)
T COG1894           4 PFLKNQDRITFRNLGDPDPWSLDEYLARGGYEGLRKALTEMGPDEIIEEVKESGLRGRGGAGFPTGLKWSFMPKA-TSDQ   82 (424)
T ss_pred             chhhhhhhHHHHhcCCCCcccHHHHHhcCcHHHHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCCCceeeecccC-CCCc
Confidence            45778888 57676776678999999999999999999 699999999999999999999999999999999884 3344


Q ss_pred             cEEEEEccCCCCcchhhhHHhhcChHHHHHHHHHHHHhhCCCEEEEEEcCCCHHHHHHHHHHHHHHHHcCccCccCCCCC
Q 011427          134 SYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSG  213 (486)
Q Consensus       134 ~~lVvNa~E~EP~~~~D~~lm~~~p~~vieG~~i~~~a~gA~~~~I~I~~~~~~a~~~l~~Ai~ea~~~g~lg~~~~g~g  213 (486)
                      |||||||||+||++||||.||+++||.|||||+|++||+||.++|||||+||+.++++|++||+|||++||||+|||||+
T Consensus        83 kylvcNADE~ePGTfkDR~ime~dPH~LIEGm~IA~yA~gA~~~YiYiRgEy~~a~~~l~~AI~eA~~~GlLGknilGSg  162 (424)
T COG1894          83 KYLVCNADEGEPGTFKDRLIMEGDPHLLIEGMIIAAYAVGATKGYIYIRGEYPEAIERLQKAIEEAYAAGLLGKNILGSG  162 (424)
T ss_pred             eEEEEeCCCCCCcccccHHHHhcCcHHHHHHHHHHHHHhccceeEEEEecchHHHHHHHHHHHHHHHHhCcccccccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeEEEEEccCcCcCccHHHHHHHHcCCCCCCCCCCCCCcccCCcCCCceeecHHHHHHHHHHHHcCchhhhhcCCCCC
Q 011427          214 YDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRKNN  293 (486)
Q Consensus       214 ~~~~i~V~~~~~~Yp~GeE~aLi~sl~G~~~~pr~kpp~pa~~G~~g~PTvV~NVET~a~v~~iv~~G~~~~~~~G~~~~  293 (486)
                      |+|||+||.++++|+||||||||+|||||++.||.|||||+..||||+||+||||||+++||.|+++|..||+++|++++
T Consensus       163 fdfdl~vh~GAGAYICGEETALl~SLEGkrg~PR~KPPfPa~~GL~G~PT~INNVET~a~vP~Ii~~G~~wf~~~G~~~s  242 (424)
T COG1894         163 FDFDLYVHHGAGAYICGEETALLESLEGKRGQPRLKPPFPATSGLYGKPTVINNVETLANVPAIIRRGADWFRSIGKPNS  242 (424)
T ss_pred             cceEEEEecCCcceecchHHHHHHHhcCCCCCCCCCCCCccccCccCCCceeecchhhhhhHHHHHhhHHHHHhcCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEEccCCCceeEEEeCCCCHHHHHHHccCCCcCCCCcccEEecCCCCCCccccccccccccChhHHhhhccccc
Q 011427          294 SGTKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLMDYDALKAVQSGLG  373 (486)
Q Consensus       294 ~gtk~vtVsG~V~~Pg~~evpiGtpl~eli~~~~GG~~~g~~~~~~vi~GG~s~p~~~~~~~~d~~~d~d~l~~~g~~~G  373 (486)
                      +|||+|+|||+|++||+||+|||||++|||+++|||+.+|| ++|+||+||+|+|+++.+.+ |++||||+|+++|+++|
T Consensus       243 ~GTKlf~~sG~V~~pg~~E~pmG~tlrelie~~aGG~r~G~-~lKAv~pGG~s~~~l~~~~~-d~pmDydsl~~~gs~lG  320 (424)
T COG1894         243 RGTKLFSLSGHVKNPGLYEVPMGTTLRELIEDYAGGVRGGW-KLKAVQPGGPSGPCLPEELL-DTPMDYDSLAKAGSMLG  320 (424)
T ss_pred             CCceEEEeeccccCCceEEecCCCcHHHHHHHhcCCcCCCc-eeEEEeeCCCCcccCCHHHh-CCCcCHHHHHhcccccC
Confidence            99999999999999999999999999999998999999997 89999999999999996555 79999999999999999


Q ss_pred             cceEEeecCCccHHHHHHHHhhhhccCcCCCCccchhhHHHHHHHHHHHHcCCCCHHhHHHHHHHHHHhccCCCCCCCcc
Q 011427          374 TAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDA  453 (486)
Q Consensus       374 tg~IIVld~~~ciV~~~~~~~~F~~~ESCGqC~PCReG~~~l~~iL~ri~~G~~~~~Dld~L~ela~~i~~~s~C~lg~~  453 (486)
                      ||+|||||+++|||+.++++++||++||||||+|||+|+.|++++|+||.+|+++++|+|+|++++++|+++|+|+||++
T Consensus       321 tggiiV~d~~~~mv~~~~~~~~F~~~ESCGkCtPCReGt~w~~~il~ri~~G~~~~~dl~~L~~l~~~i~g~s~CalG~~  400 (424)
T COG1894         321 TGGIIVMDDSTCMVKAARRLSEFYKHESCGKCTPCREGTGWMVRILERLVRGEGQPEDLDLLEDLCNQIKGKTFCALGDA  400 (424)
T ss_pred             cceEEEEeCcccHHHHHHHHHHHhccCcCCCCCCccCCcHHHHHHHHHHHcCCCChHHHHHHHHHHhccCCceeeecCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHhhHHHHHHHHHhc
Q 011427          454 AAWPVQGLIRHFRPELERRIKEH  476 (486)
Q Consensus       454 a~~pv~s~I~~FrdEfe~hi~~~  476 (486)
                      +++||+|+|+||||||++||+..
T Consensus       401 a~~Pv~s~lr~Fr~E~~~~i~~~  423 (424)
T COG1894         401 AAWPVQSALRHFRDEFEAHIKVG  423 (424)
T ss_pred             chhHHHHHHHhCHHHHHHhhccC
Confidence            99999999999999999999643

>PLN03132 NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional Back     alignment and domain information
>KOG2658 consensus NADH:ubiquinone oxidoreductase, NDUFV1/51kDa subunit [Energy production and conversion] Back     alignment and domain information
>PTZ00304 NADH dehydrogenase [ubiquinone] flavoprotein 1; Provisional Back     alignment and domain information
>PRK13596 NADH dehydrogenase I subunit F; Provisional Back     alignment and domain information
>PRK11278 NADH dehydrogenase I subunit F; Provisional Back     alignment and domain information
>TIGR01959 nuoF_fam NADH-quinone oxidoreductase, F subunit Back     alignment and domain information
>PRK05035 electron transport complex protein RnfC; Provisional Back     alignment and domain information
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit Back     alignment and domain information
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion] Back     alignment and domain information
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional Back     alignment and domain information
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit Back     alignment and domain information
>PF01512 Complex1_51K: Respiratory-chain NADH dehydrogenase 51 Kd subunit; InterPro: IPR011538 NADH:ubiquinone oxidoreductase (complex I) (1 Back     alignment and domain information
>PF10589 NADH_4Fe-4S: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; InterPro: IPR019575 NADH:ubiquinone oxidoreductase (complex I) (1 Back     alignment and domain information
>PF10531 SLBB: SLBB domain; InterPro: IPR019554 The soluble ligand-binding beta-grasp domain (SLBB) contains a beta-grasp fold Back     alignment and domain information
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion] Back     alignment and domain information
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins Back     alignment and domain information
>PF11973 NQRA_SLBB: NQRA C-terminal domain; InterPro: IPR022615 This domain is found in bacterial Na(+)-translocating NADH-quinone reductase subunit A (NQRA) proteins Back     alignment and domain information
>PRK09853 putative selenate reductase subunit YgfK; Provisional Back     alignment and domain information
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit Back     alignment and domain information
>TIGR03027 pepcterm_export putative polysaccharide export protein, PEP-CTERM sytem-associated Back     alignment and domain information
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed Back     alignment and domain information
>TIGR03028 EpsE polysaccharide export protein EpsE Back     alignment and domain information
>TIGR03028 EpsE polysaccharide export protein EpsE Back     alignment and domain information
>TIGR00273 iron-sulfur cluster-binding protein Back     alignment and domain information
>COG1596 Wza Periplasmic protein involved in polysaccharide export, contains SLBB domain of b-grasp fold [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>TIGR03290 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, subunit C Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query486
2fug_1438 Crystal Structure Of The Hydrophilic Domain Of Resp 1e-105
>pdb|2FUG|1 Chain 1, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus Length = 438 Back     alignment and structure 
Iteration: 1

 Score =  378 bits (971), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 191/377 (50%), Positives = 254/377 (67%), Gaps = 10/377 (2%)
Query: 94  KGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREI 153
           K  D ++ EVK+SGLRGRGGAGFP+GLKWSFMPK  DG+  YL+ NADESEPG+ KDR I
Sbjct: 48  KTPDEVIEEVKRSGLRGRGGAGFPTGLKWSFMPK-DDGKQHYLICNADESEPGSFKDRYI 106
Query: 154 MRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSG 213
           +   PH L+EG ++AG  +RA+  YIY+RGEY      LE+A +EA A G LGKN  G+ 
Sbjct: 107 LEDVPHLLIEGMILAGYAIRATVGYIYVRGEYRRAADRLEQAIKEARARGYLGKNLFGTD 166
Query: 214 YDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAV 273
           + FD+H+H GAGAYICGEETAL+ SLEG +  PRLKPPFPA +GL+G PTT+ NVET+A 
Sbjct: 167 FSFDLHVHRGAGAYICGEETALMNSLEGLRANPRLKPPFPAQSGLWGKPTTINNVETLAS 226
Query: 274 SPTILRRGPDWFASFGRKNNSGTKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGG 333
              I+ RG DWFA  G + + G KL+ +SG V +P   E  M    +ELI    GG    
Sbjct: 227 VVPIMERGADWFAQMGTEQSKGMKLYQISGPVKRPGVYELPMGTTFRELIYEWAGGP--- 283
Query: 334 WDNLLAVIPGGSSVPLLPKHICDDVL---MDYDALKAVQSGLGTAAVIVMDKSTDVVDAI 390
            + + A+IPGGSS P LP    ++VL   M Y+ L+A  S LGT  VI++ +   +VDA+
Sbjct: 284 LEPIQAIIPGGSSTPPLP--FTEEVLDTPMSYEHLQAKGSMLGTGGVILIPERVSMVDAM 341
Query: 391 ARLSYFYKHESCGQCTPCREGT-GWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICA 449
             L+ FY HESCG+CTPCREG  G++  +  ++  G  + ++++ L+ +   IEG + C 
Sbjct: 342 WNLTRFYAHESCGKCTPCREGVAGFMVNLFAKIGTGQGEEKDVENLEALLPLIEGRSFCP 401
Query: 450 LGDAAAWPVQGLIRHFR 466
           L DAA WPV+G +RHF+
Sbjct: 402 LADAAVWPVKGSLRHFK 418

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query486
3i9v_1438 NADH-quinone oxidoreductase subunit 1; electron tr 0.0
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-04
>3i9v_1 NADH-quinone oxidoreductase subunit 1; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_1* 2fug_1* 3iam_1* 3ias_1* 3m9s_1* Length = 438 Back     alignment and structure
 Score =  749 bits (1936), Expect = 0.0
 Identities = 196/421 (46%), Positives = 267/421 (63%), Gaps = 7/421 (1%)

Query: 59  KDEDRIFTNLYGMHDPFLKGAMKRGDWHRTKD-LVLKGADWIVNEVKKSGLRGRGGAGFP 117
           + E  ++ ++       L   ++ G +   K  L  K  D ++ EVK+SGLRGRGGAGFP
Sbjct: 12  RFERTLYAHVGKEGSWTLDYYLRHGGYETAKRVLKEKTPDEVIEEVKRSGLRGRGGAGFP 71

Query: 118 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 177
           +GLKWSFMPK  DG+  YL+ NADESEPG+ KDR I+   PH L+EG ++AG  +RA+  
Sbjct: 72  TGLKWSFMPK-DDGKQHYLICNADESEPGSFKDRYILEDVPHLLIEGMILAGYAIRATVG 130

Query: 178 YIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLE 237
           YIY+RGEY      LE+A +EA A G LGKN  G+ + FD+H+H GAGAYICGEETAL+ 
Sbjct: 131 YIYVRGEYRRAADRLEQAIKEARARGYLGKNLFGTDFSFDLHVHRGAGAYICGEETALMN 190

Query: 238 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRKNNSGTK 297
           SLEG +  PRLKPPFPA +GL+G PTT+ NVET+A    I+ RG DWFA  G + + G K
Sbjct: 191 SLEGLRANPRLKPPFPAQSGLWGKPTTINNVETLASVVPIMERGADWFAQMGTEQSKGMK 250

Query: 298 LFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLP-KHICD 356
           L+ +SG V +P   E  M    +ELI    GG     + + A+IPGGSS P LP      
Sbjct: 251 LYQISGPVKRPGVYELPMGTTFRELIYEWAGGP---LEPIQAIIPGGSSTPPLPFTEEVL 307

Query: 357 DVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGT-GWL 415
           D  M Y+ L+A  S LGT  VI++ +   +VDA+  L+ FY HESCG+CTPCREG  G++
Sbjct: 308 DTPMSYEHLQAKGSMLGTGGVILIPERVSMVDAMWNLTRFYAHESCGKCTPCREGVAGFM 367

Query: 416 WMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKE 475
             +  ++  G  + ++++ L+ +   IEG + C L DAA WPV+G +RHF+ +     +E
Sbjct: 368 VNLFAKIGTGQGEEKDVENLEALLPLIEGRSFCPLADAAVWPVKGSLRHFKDQYLALARE 427

Query: 476 H 476
            
Sbjct: 428 K 428
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query486
3i9v_1438 NADH-quinone oxidoreductase subunit 1; electron tr 100.0
2j58_A359 WZA, outer membrane lipoprotein WZA; membrane prot 90.17
3vr8_B282 Iron-sulfur subunit of succinate dehydrogenase; me 80.79
>3i9v_1 NADH-quinone oxidoreductase subunit 1; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_1* 2fug_1* 3iam_1* 3ias_1* 3m9s_1* Back     alignment and structure
Probab=100.00  E-value=5.2e-123  Score=973.76  Aligned_cols=412  Identities=47%  Similarity=0.856  Sum_probs=396.6

Q ss_pred             eEEeccccccC-CChhHHHhcCCchhcHHHHh-cChHHHHHHHHHccccCCCCCCCccccccccCCCCCCCCCcEEEEEc
Q 011427           63 RIFTNLYGMHD-PFLKGAMKRGDWHRTKDLVL-KGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNA  140 (486)
Q Consensus        63 ~i~~~~~g~~~-~~~~~~~~~ggy~~l~~~~~-~~~e~ii~~i~~sGl~G~GGAGFPT~~K~~~~~~~~~~~~~~lVvNa  140 (486)
                      ++.+..++.++ +++|+|+++|||++|++++. +++++|+++|++||||||||||||||+||+++++ .+.+++||||||
T Consensus        15 ~~~~~~~~~~~~~~l~~y~~~ggy~~l~~~l~~~~~~~ii~~ik~sGl~GrGGAGFPT~~Kw~~~~~-~~~~~~~li~Na   93 (438)
T 3i9v_1           15 RTLYAHVGKEGSWTLDYYLRHGGYETAKRVLKEKTPDEVIEEVKRSGLRGRGGAGFPTGLKWSFMPK-DDGKQHYLICNA   93 (438)
T ss_dssp             CCSTTSTTSTTTTSHHHHHHTTCTHHHHHHHHSSCHHHHHHHHHTTTCBCTTTTCCBHHHHHTTSCS-SCSCCCEEEEEC
T ss_pred             cchhhcCCCCCccCHHHHHHcCCHHHHHHHHHhCCHHHHHHHHHHcCCcCCCCCCCchHHHHhcccc-cCCCCCEEEEEc
Confidence            35566677666 49999999999999999997 9999999999999999999999999999998765 246789999999


Q ss_pred             cCCCCcchhhhHHhhcChHHHHHHHHHHHHhhCCCEEEEEEcCCCHHHHHHHHHHHHHHHHcCccCccCCCCCCceeEEE
Q 011427          141 DESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHI  220 (486)
Q Consensus       141 ~E~EP~~~~D~~lm~~~p~~vieG~~i~~~a~gA~~~~I~I~~~~~~a~~~l~~Ai~ea~~~g~lg~~~~g~g~~~~i~V  220 (486)
                      +|||||+|+|++||+++||+|||||.|+++++||+++|||||+||++++++|++||++++++||||+||||++|+++|+|
T Consensus        94 ~E~EPg~~~Dr~lm~~~p~~vieG~~i~~~a~ga~~~~I~ir~e~~~ai~~l~~Ai~~a~~~g~lg~~i~gs~~~~~i~v  173 (438)
T 3i9v_1           94 DESEPGSFKDRYILEDVPHLLIEGMILAGYAIRATVGYIYVRGEYRRAADRLEQAIKEARARGYLGKNLFGTDFSFDLHV  173 (438)
T ss_dssp             CCCSTTCCSHHHHHHHCHHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTSSBTTGGGSSCCBEEEE
T ss_pred             cCCCccchhhHHHHHHCHHHHHHHHHHHHHHhCCCEEEEEEccCcHHHHHHHHHHHHHHHHcCCCcccccCCCCCceEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEccCcCcCccHHHHHHHHcCCCCCCCCCCCCCcccCCcCCCceeecHHHHHHHHHHHHcCchhhhhcCCCCCCCcEEEE
Q 011427          221 HYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRKNNSGTKLFC  300 (486)
Q Consensus       221 ~~~~~~Yp~GeE~aLi~sl~G~~~~pr~kpp~pa~~G~~g~PTvV~NVET~a~v~~iv~~G~~~~~~~G~~~~~gtk~vt  300 (486)
                      +.++++|||||||+||++||||+++||.|||+|+++|+||+||+||||||+++|++|+++|.+||+++|+++++|||+||
T Consensus       174 ~~~~g~Yp~GeEtaLi~sleGk~~~Pr~~Pp~Pa~~Gl~g~PtvV~NVeTla~v~~iv~~G~~~~~~~G~~~~~gtk~~t  253 (438)
T 3i9v_1          174 HRGAGAYICGEETALMNSLEGLRANPRLKPPFPAQSGLWGKPTTINNVETLASVVPIMERGADWFAQMGTEQSKGMKLYQ  253 (438)
T ss_dssp             EECCSCGGGGSHHHHHHHHTTSCCCCCCCSSCTTTSCGGGSCEEEEEHHHHHTHHHHHHSCHHHHHTBBCSSSBSEEEEE
T ss_pred             EEcCCcCCCChHHHHHHHHhCCccCCCCCCCCchhcCCcCCceEEECHHHHHHHHHHHHhCcHHHHhcCCCCCCCcEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCceeEEEeCCCCHHHHHHHccCCCcCCCCcccEEecCCCCCCcc--ccccccccccChhHHhhhccccccceEE
Q 011427          301 VSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLL--PKHICDDVLMDYDALKAVQSGLGTAAVI  378 (486)
Q Consensus       301 VsG~V~~Pg~~evpiGtpl~eli~~~~GG~~~g~~~~~~vi~GG~s~p~~--~~~~~~d~~~d~d~l~~~g~~~Gtg~II  378 (486)
                      |||+|++|+|||||+|||++|||+++|||+.   .++++||+||+|+|||  +.+.+ |+++|||++.++|+++|||+|+
T Consensus       254 vsG~V~~pg~~evp~Gt~l~eli~~~~GG~~---~~~~~vi~GG~sg~~~g~~~~~l-d~p~d~~~l~~~gs~~Gtggii  329 (438)
T 3i9v_1          254 ISGPVKRPGVYELPMGTTFRELIYEWAGGPL---EPIQAIIPGGSSTPPLPFTEEVL-DTPMSYEHLQAKGSMLGTGGVI  329 (438)
T ss_dssp             EESSBSSCEEEEEETTCBHHHHHHTTTCCBS---SCEEEEECSSSSSCCEESCHHHH-TSBCSTTTTGGGSSCCSSSEEE
T ss_pred             EeCccCCCceEEEeCCCCHHHHHHHHcCCcc---ccCCEEEECCCCCccccCCHHHc-CCccChHHHHhhccccCCceEE
Confidence            9999999999999999999999955899998   3689999999999999  55666 6999999999999999999999


Q ss_pred             eecCCccHHHHHHHHhhhhccCcCCCCccchhhHH-HHHHHHHHHHcCCCCHHhHHHHHHHHHHhccCCCCCCCccchHH
Q 011427          379 VMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTG-WLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWP  457 (486)
Q Consensus       379 Vld~~~ciV~~~~~~~~F~~~ESCGqC~PCReG~~-~l~~iL~ri~~G~~~~~Dld~L~ela~~i~~~s~C~lg~~a~~p  457 (486)
                      |||+++|||++++++++|+++||||||+|||+||+ |+.++|++|.+|+++++|+|+|++|+++|+++|+|+|++++++|
T Consensus       330 V~~~~~~~v~~a~~~~~f~~~ESCgqCtpCr~Gt~~~l~~lL~ri~~G~g~~~dld~L~~l~~~i~~~s~C~lg~~A~~P  409 (438)
T 3i9v_1          330 LIPERVSMVDAMWNLTRFYAHESCGKCTPCREGVAGFMVNLFAKIGTGQGEEKDVENLEALLPLIEGRSFCPLADAAVWP  409 (438)
T ss_dssp             EEETTSCHHHHHHHHHHHHHHHCCSCCHHHHTTTTTHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTCCSSTHHHHHHHH
T ss_pred             EecCccHHHHHHHHHHHHhhhhhCCCCccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccCCCCcCcHhHHHH
Confidence            99999999999999999999999999999999999 99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhHHHHHHHHHhchhc
Q 011427          458 VQGLIRHFRPELERRIKEHAER  479 (486)
Q Consensus       458 v~s~I~~FrdEfe~hi~~~~c~  479 (486)
                      |+++|+|||+||++||++++|+
T Consensus       410 v~s~l~~Fr~E~eahi~~~~C~  431 (438)
T 3i9v_1          410 VKGSLRHFKDQYLALAREKRPV  431 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHhcCCCC
Confidence            9999999999999999999998
>2j58_A WZA, outer membrane lipoprotein WZA; membrane protein; 2.26A {Escherichia coli} PDB: 2w8i_A 2w8h_A* Back     alignment and structure
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 486
d2fug12243 c.142.1.1 (1:7-249) NADH-quinone oxidoreductase ch 5e-85
d2fug11105 a.29.12.1 (1:334-438) NADH-quinone oxidoreductase 3e-38
d2fug1384 d.15.13.1 (1:250-333) NADH-quinone oxidoreductase 1e-27
>d2fug12 c.142.1.1 (1:7-249) NADH-quinone oxidoreductase chain 1, Nqo1 {Thermus thermophilus [TaxId: 274]} Length = 243 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nqo1 FMN-binding domain-like
superfamily: Nqo1 FMN-binding domain-like
family: Nqo1 FMN-binding domain-like
domain: NADH-quinone oxidoreductase chain 1, Nqo1
species: Thermus thermophilus [TaxId: 274]

 Score =  259 bits (664), Expect = 5e-85
 Identities = 124/238 (52%), Positives = 163/238 (68%), Gaps = 2/238 (0%)

Query: 59  KDEDRIFTNLYGMHDPFLKGAMKRGDWHRTKDLVL-KGADWIVNEVKKSGLRGRGGAGFP 117
           + E  ++ ++       L   ++ G +   K ++  K  D ++ EVK+SGLRGRGGAGFP
Sbjct: 6   RFERTLYAHVGKEGSWTLDYYLRHGGYETAKRVLKEKTPDEVIEEVKRSGLRGRGGAGFP 65

Query: 118 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 177
           +GLKWSFMPK  DG+  YL+ NADESEPG+ KDR I+   PH L+EG ++AG  +RA+  
Sbjct: 66  TGLKWSFMPKD-DGKQHYLICNADESEPGSFKDRYILEDVPHLLIEGMILAGYAIRATVG 124

Query: 178 YIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLE 237
           YIY+RGEY      LE+A +EA A G LGKN  G+ + FD+H+H GAGAYICGEETAL+ 
Sbjct: 125 YIYVRGEYRRAADRLEQAIKEARARGYLGKNLFGTDFSFDLHVHRGAGAYICGEETALMN 184

Query: 238 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRKNNSG 295
           SLEG +  PRLKPPFPA +GL+G PTT+ NVET+A    I+ RG DWFA  G + + G
Sbjct: 185 SLEGLRANPRLKPPFPAQSGLWGKPTTINNVETLASVVPIMERGADWFAQMGTEQSKG 242
>d2fug11 a.29.12.1 (1:334-438) NADH-quinone oxidoreductase chain 1, Nqo1 {Thermus thermophilus [TaxId: 274]} Length = 105 Back     information, alignment and structure
>d2fug13 d.15.13.1 (1:250-333) NADH-quinone oxidoreductase chain 1, Nqo1 {Thermus thermophilus [TaxId: 274]} Length = 84 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query486
d2fug12243 NADH-quinone oxidoreductase chain 1, Nqo1 {Thermus 100.0
d2fug11105 NADH-quinone oxidoreductase chain 1, Nqo1 {Thermus 99.95
d2fug1384 NADH-quinone oxidoreductase chain 1, Nqo1 {Thermus 99.88
d2bs2b1133 Fumarate reductase {Wolinella succinogenes [TaxId: 82.11
d1kf6b1138 Fumarate reductase {Escherichia coli [TaxId: 562]} 81.32
>d2fug12 c.142.1.1 (1:7-249) NADH-quinone oxidoreductase chain 1, Nqo1 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nqo1 FMN-binding domain-like
superfamily: Nqo1 FMN-binding domain-like
family: Nqo1 FMN-binding domain-like
domain: NADH-quinone oxidoreductase chain 1, Nqo1
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=3.1e-75  Score=566.49  Aligned_cols=233  Identities=53%  Similarity=0.951  Sum_probs=222.2

Q ss_pred             ceEEeccccccCCChhHHHhcCCchhcHHHHh-cChHHHHHHHHHccccCCCCCCCccccccccCCCCCCCCCcEEEEEc
Q 011427           62 DRIFTNLYGMHDPFLKGAMKRGDWHRTKDLVL-KGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNA  140 (486)
Q Consensus        62 ~~i~~~~~g~~~~~~~~~~~~ggy~~l~~~~~-~~~e~ii~~i~~sGl~G~GGAGFPT~~K~~~~~~~~~~~~~~lVvNa  140 (486)
                      ..||.+.....+|++|+|+++|||++|++++. |+||+|+++|++||||||||||||||+||+++++ .+.+++||||||
T Consensus         9 ~vi~~~~~~~~~~~l~~Y~~~GGY~~l~kal~~~~pe~ii~~v~~sgL~GrGGAgFPt~~Kw~~~~~-~~~~~~yvVvN~   87 (243)
T d2fug12           9 RTLYAHVGKEGSWTLDYYLRHGGYETAKRVLKEKTPDEVIEEVKRSGLRGRGGAGFPTGLKWSFMPK-DDGKQHYLICNA   87 (243)
T ss_dssp             TCCCCSSCCCSCCSHHHHHTTTTTHHHHHHHHHSCHHHHHHHHHTTTCBCTTSSCCBHHHHHHTSCS-SSCCCCEEEEEE
T ss_pred             hHHHhcCCCCCCCCHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHHhhhhhccccCCCcchhhhhcch-hcCCceEEEeec
Confidence            44455555555579999999999999999996 8999999999999999999999999999999876 356789999999


Q ss_pred             cCCCCcchhhhHHhhcChHHHHHHHHHHHHhhCCCEEEEEEcCCCHHHHHHHHHHHHHHHHcCccCccCCCCCCceeEEE
Q 011427          141 DESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHI  220 (486)
Q Consensus       141 ~E~EP~~~~D~~lm~~~p~~vieG~~i~~~a~gA~~~~I~I~~~~~~a~~~l~~Ai~ea~~~g~lg~~~~g~g~~~~i~V  220 (486)
                      +||||++||||+||+++||+|||||.|+|+++||+++|||||++|+++++.|++||++++++|+||+||+|++++++|+|
T Consensus        88 ~E~EPg~~kDr~Ll~~~Ph~vieG~~iaa~avgA~~~~I~ir~e~~~ai~~l~~ai~~a~~~g~lg~~i~g~~~~~~i~v  167 (243)
T d2fug12          88 DESEPGSFKDRYILEDVPHLLIEGMILAGYAIRATVGYIYVRGEYRRAADRLEQAIKEARARGYLGKNLFGTDFSFDLHV  167 (243)
T ss_dssp             CCCSTTCCSHHHHHHHCHHHHHHHHHHHHHHTTCSEEEEEECTTCHHHHHHHHHHHHHHHHTTSSBSSTTSTTCCBEEEE
T ss_pred             CCCCccccCCHHHHHHhHHHHHHHHHHHHHHhCcceEEEEeccccHHHHHHHHHHHHHHHHcCCCCccccCCCCCeeEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEccCcCcCccHHHHHHHHcCCCCCCCCCCCCCcccCCcCCCceeecHHHHHHHHHHHHcCchhhhhcCCCCCCC
Q 011427          221 HYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRKNNSG  295 (486)
Q Consensus       221 ~~~~~~Yp~GeE~aLi~sl~G~~~~pr~kpp~pa~~G~~g~PTvV~NVET~a~v~~iv~~G~~~~~~~G~~~~~g  295 (486)
                      +.++++|||||||+||++|||++++||.|||+|+++|+||+||+||||||+++|+.|+++|..||+++|+++++|
T Consensus       168 ~~~~g~Yi~GEEtaLi~sleG~~~~pr~~pP~p~~~Gl~g~PTvV~NVeTla~v~~ii~~G~~~f~~~G~~~~~G  242 (243)
T d2fug12         168 HRGAGAYICGEETALMNSLEGLRANPRLKPPFPAQSGLWGKPTTINNVETLASVVPIMERGADWFAQMGTEQSKG  242 (243)
T ss_dssp             EECCSCGGGGSHHHHHHHHTTSCCCCCCSSSCTTTSBGGGBCEEEEEHHHHHHHHHHHHSCHHHHHSSBCSSCBS
T ss_pred             EECCCccccchhHHHHHHhcCCccCCCCCCCCccccCcCCCCCeeeHHHHHHHHHHHHHHhHHHHHhcCCCCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999887
>d2fug11 a.29.12.1 (1:334-438) NADH-quinone oxidoreductase chain 1, Nqo1 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2fug13 d.15.13.1 (1:250-333) NADH-quinone oxidoreductase chain 1, Nqo1 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2bs2b1 a.1.2.1 (B:107-239) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Back     information, alignment and structure
>d1kf6b1 a.1.2.1 (B:106-243) Fumarate reductase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure