Citrus Sinensis ID: 011434

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480------
MPRSSSRHVNINKENKTHAKIEEPTSRITRAKAKALGTSGGIFPSSKPTFKPDHKHVLRMNSKRGASDENKASVTATSGIQHKRRAVLKDVTNICENSHRNYSSFAKIQTRKQPSSSPPKKIAKVSSDVCAENLLVEEDVKEKLAEELSKIRMGEPQEVTENTSECGKADRNHPTHVSEKPFGLQGHQMREENNLCEELQSNGPSIVNIDSNLEDPQVCSLYAPDIYNNIRVTELDQRPSTTYMEKLQQDITPNMRGILIDWLVEVSEEYKLVPDTLYLTVNLIDRFLSQNHIPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEVLKMESQVLNFLHFQLSVPTTKSFLRRFIQAAQASHKVSCLELEFLANYLAELTLLEYSFLRFRPSLVAASAVFLAKWTLNQSEHPWNSTLEHYTSYKASELKCTVLALEDLQLNTDGCSLNAIREKYRQEKFKCVATMTPTERVLSVFSR
ccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHcccccHHHHHcccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHccccccccccEEEcccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHHHHHHcccccccEEcccccHHHHHHHcc
cccccccccccccccHHHHHHcccccHHHHHHHHHHHccccccccccccccccccHHHHHHHcccccccccccccccccccccccHHHHHccccccccccccccHHHHHHHcccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccEEEcccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccHHHHHHccccHHHHHHHHHHHHHHHHcccccccHHHHEccccHHHcHHccccccccHHHHHcc
mprsssrhvninkenkthakieeptsRITRAKAKAlgtsggifpsskptfkpdhkhvlrmnskrgasdenkasvtaTSGIQHKRRAVLKDVTNICENSHRNYSSFAKiqtrkqpsssppkkiakvSSDVCAENLLVEEDVKEKLAEELSKirmgepqevtentsecgkadrnhpthvsekpfglqghqmREENNLCeelqsngpsivnidsnledpqvcslyapdiynnirvteldqrpsttYMEKLQQDITPNMRGILIDWLVEVSEEYKLVPDTLYLTVNLIDRflsqnhipkqrlQLVGVTCMLIASKYEEIIAPRleefcfitdntytREEVLKMESQVLNFLHFQLSVPTTKSFLRRFIQAAQASHKVSCLELEFLANYLAELTLLEYSFLRFRPSLVAASAVFLAKWTlnqsehpwnstlehytsykaseLKCTVLALEDLqlntdgcsLNAIREKYRQEKFKCVATMTPTERVLSVFSR
mprsssrhvninkenkthakieeptsriTRAKAKALgtsggifpsskptfkpdhKHVLRmnskrgasdenkasvtatsgiqhkrraVLKDVTNICENSHRNYSSfakiqtrkqpsssppkkiakvsSDVCAENLLVEEDVKEKLAEElskirmgepqevtentsecgkadrnhpthvSEKPFGLQGHQMREENNLCEELQSNGPSIVNIDSNLEDPQVCSLYAPDIYNNIRvteldqrpsTTYMEKLQQDITPNMRGILIDWLVEVSEEYKLVPDTLYLTVNLIDRFLsqnhipkqrlQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEVLKMESQVLNFLHFQLSVPTTKSFLRRFIQAAQASHKVSCLELEFLANYLAELTLLEYSFLRFRPSLVAASAVFLAKWTLNQSEHPWNSTLEHYTSYKASELKCTVLALEDLQLNTDGCSLNAIREKYRqekfkcvatmtptervlsvfsr
MPRSSSRHVNINKENKTHAKIEEPTSRITRAKAKALGTSGGIFPSSKPTFKPDHKHVLRMNSKRGASDENKASVTATSGIQHKRRAVLKDVTNICENSHRNYSSFAKIQTRKQPSSSPPKKIAKVSSDVCAENLLVEEDVKEKLAEELSKIRMGEPQEVTENTSECGKADRNHPTHVSEKPFGLQGHQMREENNLCEELQSNGPSIVNIDSNLEDPQVCSLYAPDIYNNIRVTELDQRPSTTYMEKLQQDITPNMRGILIDWLVEVSEEYKLVPDTLYLTVNLIDRFLSQNHIPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEVLKMESQVLNFLHFQLSVPTTKSFLRRFIQAAQASHKVSCLELEFLANYLAELTLLEYSFLRFRPSLVAASAVFLAKWTLNQSEHPWNSTLEHYTSYKASELKCTVLALEDLQLNTDGCSLNAIREKYRQEKFKCVATMTPTERVLSVFSR
*************************************************************************************AVLKDVTNICE**************************************************************************************************************VNIDSNLEDPQVCSLYAPDIYNNIRVTELDQRPSTTYMEKLQQDITPNMRGILIDWLVEVSEEYKLVPDTLYLTVNLIDRFLSQNHIPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEVLKMESQVLNFLHFQLSVPTTKSFLRRFIQAAQASHKVSCLELEFLANYLAELTLLEYSFLRFRPSLVAASAVFLAKWTLNQSEHPWNSTLEHYTSYKASELKCTVLALEDLQLNTDGCSLNAIREKYRQEKFKCVATMTPT*********
****************************************************************************************KDVT**************************************************************************************************************GPSIVNIDSNLEDPQVCSLYAPDIYNNIRVTELDQRPSTTYMEKLQQDITPNMRGILIDWLVEVSEEYKLVPDTLYLTVNLIDRFLSQNHIPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEVLKMESQVLNFLHFQLSVPTTKSFLRRFIQAAQASHKVSCLELEFLANYLAELTLLEYSFLRFRPSLVAASAVFLAKWTLNQSEHPWNSTLEHYTSYKASELKCTVLALEDLQLNTDGCSLNAIREKYRQEKFKCVATMTPTERVLSVFS*
**********INKENKTHAKIEEPTSRITRAKAKALGTSGGIFPSSKPTFKPDHKHVLRMN********************HKRRAVLKDVTNICENSHRNYSSFA*******************SSDVCAENLLVEEDVKEKLAEELSKIRMG*******************PTHVSEKPFGLQGHQMREENNLCEELQSNGPSIVNIDSNLEDPQVCSLYAPDIYNNIRVTELDQRPSTTYMEKLQQDITPNMRGILIDWLVEVSEEYKLVPDTLYLTVNLIDRFLSQNHIPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEVLKMESQVLNFLHFQLSVPTTKSFLRRFIQAAQASHKVSCLELEFLANYLAELTLLEYSFLRFRPSLVAASAVFLAKWTLNQSEHPWNSTLEHYTSYKASELKCTVLALEDLQLNTDGCSLNAIREKYRQEKFKCVATMTPTERVLSVFSR
*************************S***********************************************************A*LK*V**ICE***************************************************************************************************CEELQSNGPSIVNIDSNLEDPQVCSLYAPDIYNNIRVTELDQRPSTTYMEKLQQDITPNMRGILIDWLVEVSEEYKLVPDTLYLTVNLIDRFLSQNHIPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEVLKMESQVLNFLHFQLSVPTTKSFLRRFIQAAQASHKVSCLELEFLANYLAELTLLEYSFLRFRPSLVAASAVFLAKWTLNQSEHPWNSTLEHYTSYKASELKCTVLALEDLQLNTDGCSLNAIREKYRQEKFKCVATMTPTERVLS*FS*
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MPRSSSRHVNINKENKTHAKIEEPTSRITRAKAKALGTSGGIFPSSKPTFKPDHKHVLRMNSKRGASDENKASVTATSGIQHKRRAVLKDVTNICENSHRNYSSFAKIQTRKQPSSSPPKKIAKVSSDVCAENLLVEEDVKEKLAEELSKIRMGEPQEVTENTSECGKADRNHPTHVSEKPFGLQGHQMREENNLCEELQSNGPSIVNIDSNLEDPQVCSLYAPDIYNNIRVTELDQRPSTTYMEKLQQDITPNMRGILIDWLVEVSEEYKLVPDTLYLTVNLIDRFLSQNHIPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEVLKMESQVLNFLHFQLSVPTTKSFLRRFIQAAQASHKVSCLELEFLANYLAELTLLEYSFLRFRPSLVAASAVFLAKWTLNQSEHPWNSTLEHYTSYKASELKCTVLALEDLQLNTDGCSLNAIREKYRQEKFKCVATMTPTERVLSVFSR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query486 2.2.26 [Sep-21-2011]
Q39071443 Cyclin-A2-1 OS=Arabidopsi yes no 0.905 0.993 0.554 1e-141
Q147G5436 Cyclin-A2-2 OS=Arabidopsi no no 0.886 0.988 0.554 1e-139
Q2QQ96490 Cyclin-A2-1 OS=Oryza sati yes no 0.967 0.959 0.519 1e-132
Q9C968461 Cyclin-A2-4 OS=Arabidopsi no no 0.878 0.926 0.531 1e-123
Q38819450 Cyclin-A2-3 OS=Arabidopsi no no 0.845 0.913 0.498 1e-112
Q7F830508 Cyclin-A1-1 OS=Oryza sati no no 0.549 0.525 0.625 2e-96
Q9C6Y3460 Cyclin-A1-1 OS=Arabidopsi no no 0.549 0.580 0.599 1e-95
Q0INT0491 Cyclin-A1-3 OS=Oryza sati no no 0.549 0.543 0.621 2e-95
Q0JPA4477 Cyclin-A1-2 OS=Oryza sati no no 0.539 0.549 0.625 2e-94
Q0DJR9356 Cyclin-A1-4 OS=Oryza sati no no 0.549 0.75 0.580 2e-88
>sp|Q39071|CCA21_ARATH Cyclin-A2-1 OS=Arabidopsis thaliana GN=CYCA2-1 PE=2 SV=3 Back     alignment and function desciption
 Score =  503 bits (1295), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 271/489 (55%), Positives = 338/489 (69%), Gaps = 49/489 (10%)

Query: 1   MPRSSSRHVNINKENKTHAKIEEPTSRITRAKAKALGTSGGIFPSSKPTFKPDHKHVLRM 60
           M R+SS+H N  KE  + +KI +   R+TR++AKALG S      SKP FK + K V R 
Sbjct: 1   MHRASSKHTNAKKEAISTSKIRDNNVRVTRSRAKALGVSNS---PSKPAFKHETKRVARP 57

Query: 61  NSKRGASDENKASVTATSGIQHKRRAVLKDVTNICENSHRNYSSFAKIQTRKQPSSSPPK 120
           ++KR ASD    ++T  +    KRRAVLKDVTN          + A+     + +    K
Sbjct: 58  SNKRMASD----NITVCN---QKRRAVLKDVTN----------TLAESIISTEGNVKACK 100

Query: 121 KIAKVSSDVCAENLLVEEDVKEKLAEELSKIRMGEPQEVT---ENTSECGKADRNHPTHV 177
           +  K +  +  + L+  +  K KLAE+LSKIRM E  + +   +   +C + DR+  T  
Sbjct: 101 RGGKETKQIEEDGLVDVDGEKSKLAEDLSKIRMVESLDASASKQKLVDCAEEDRSDVTDC 160

Query: 178 SEKPFGLQGHQMREENNLCEELQSNGPSIVNIDSNLEDPQVCSLYAPDIYNNIRVTELDQ 237
            +                          IV+IDS ++DPQ CSLYA  IY++I V EL+Q
Sbjct: 161 VQ--------------------------IVDIDSGVQDPQFCSLYAASIYDSINVAELEQ 194

Query: 238 RPSTTYMEKLQQDITPNMRGILIDWLVEVSEEYKLVPDTLYLTVNLIDRFLSQNHIPKQR 297
           RPST+YM ++Q+DI P MRGILIDWLVEVSEEYKLV DTLYLTVNLIDRF+S N+I KQ+
Sbjct: 195 RPSTSYMVQVQRDIDPTMRGILIDWLVEVSEEYKLVSDTLYLTVNLIDRFMSHNYIEKQK 254

Query: 298 LQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEVLKMESQVLNFLHFQLSVPTTK 357
           LQL+G+TCMLIASKYEEI APRLEEFCFITDNTYTR EVL ME +VLN LHF+LSVPTTK
Sbjct: 255 LQLLGITCMLIASKYEEISAPRLEEFCFITDNTYTRLEVLSMEIKVLNSLHFRLSVPTTK 314

Query: 358 SFLRRFIQAAQASHKVSCLELEFLANYLAELTLLEYSFLRFRPSLVAASAVFLAKWTLNQ 417
           +FLRRFI+AAQAS KV  +E+E+LANY AELTL EY+FLRF PSL+AASAVFLA+WTL+Q
Sbjct: 315 TFLRRFIRAAQASDKVPLIEMEYLANYFAELTLTEYTFLRFLPSLIAASAVFLARWTLDQ 374

Query: 418 SEHPWNSTLEHYTSYKASELKCTVLALEDLQLNTDGCSLNAIREKYRQEKFKCVATMTPT 477
           S HPWN TL+HYT Y+ S LK TVLA+E+LQLNT G +L AI  KY Q+KFK VAT+T  
Sbjct: 375 SNHPWNQTLQHYTRYETSALKNTVLAMEELQLNTSGSTLIAIHTKYNQQKFKRVATLTSP 434

Query: 478 ERVLSVFSR 486
           ERV ++FSR
Sbjct: 435 ERVNTLFSR 443
May negatively regulate endocycles and act as a regulator of ploidy levels in endoreduplication.
Arabidopsis thaliana (taxid: 3702)
>sp|Q147G5|CCA22_ARATH Cyclin-A2-2 OS=Arabidopsis thaliana GN=CYCA2-2 PE=2 SV=1 Back     alignment and function description
>sp|Q2QQ96|CCA21_ORYSJ Cyclin-A2-1 OS=Oryza sativa subsp. japonica GN=CYCA2-1 PE=2 SV=1 Back     alignment and function description
>sp|Q9C968|CCA24_ARATH Cyclin-A2-4 OS=Arabidopsis thaliana GN=CYCA2-4 PE=2 SV=1 Back     alignment and function description
>sp|Q38819|CCA23_ARATH Cyclin-A2-3 OS=Arabidopsis thaliana GN=CYCA2-3 PE=1 SV=2 Back     alignment and function description
>sp|Q7F830|CCA11_ORYSJ Cyclin-A1-1 OS=Oryza sativa subsp. japonica GN=CYCA1-1 PE=2 SV=1 Back     alignment and function description
>sp|Q9C6Y3|CCA11_ARATH Cyclin-A1-1 OS=Arabidopsis thaliana GN=CYCA1-1 PE=1 SV=1 Back     alignment and function description
>sp|Q0INT0|CCA13_ORYSJ Cyclin-A1-3 OS=Oryza sativa subsp. japonica GN=CYCA1-3 PE=2 SV=2 Back     alignment and function description
>sp|Q0JPA4|CCA12_ORYSJ Cyclin-A1-2 OS=Oryza sativa subsp. japonica GN=CYCA1-2 PE=3 SV=2 Back     alignment and function description
>sp|Q0DJR9|CCA14_ORYSJ Cyclin-A1-4 OS=Oryza sativa subsp. japonica GN=CYCA1-4 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query486
224092394495 predicted protein [Populus trichocarpa] 0.958 0.941 0.675 0.0
224143050433 predicted protein [Populus trichocarpa] 0.882 0.990 0.666 1e-178
255551136479 cyclin A, putative [Ricinus communis] gi 0.921 0.935 0.669 1e-177
359476069533 PREDICTED: cyclin-A2-2-like [Vitis vinif 0.985 0.898 0.624 1e-170
449437114484 PREDICTED: cyclin-A2-2-like [Cucumis sat 0.960 0.964 0.596 1e-152
351723215469 mitotic cyclin a2-type [Glycine max] gi| 0.954 0.989 0.589 1e-149
356515492469 PREDICTED: cyclin-A2-2-like [Glycine max 0.938 0.972 0.600 1e-149
849072493 A-type cyclin [Nicotiana tabacum] 0.967 0.953 0.55 1e-143
297812749433 CYCA2_1 [Arabidopsis lyrata subsp. lyrat 0.890 1.0 0.578 1e-143
297811243436 hypothetical protein ARALYDRAFT_350326 [ 0.888 0.990 0.557 1e-140
>gi|224092394|ref|XP_002309589.1| predicted protein [Populus trichocarpa] gi|222855565|gb|EEE93112.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  644 bits (1660), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/481 (67%), Positives = 380/481 (79%), Gaps = 15/481 (3%)

Query: 4   SSSRHVNINKENKTHAKIEEPTSRITRAKAKALGTSGGIFPSSKPTFKPDHKHVLRMNSK 63
           +S++   +NKEN T AK+EEP +RITRA+AKALG S GI+P+SKP+FK + +H LR  +K
Sbjct: 8   ASTKQAKMNKENATTAKLEEPATRITRARAKALGASVGIYPASKPSFKQEQRHPLRAKTK 67

Query: 64  RGASDENKASVTATSGIQHKRRAVLKDVTNI-CENSHRNYSSFAKIQTRKQPSSSPPKKI 122
           R ASDENK++ T+ +G +HKRRAVLKDV+NI CENSH+N     K  T K     PPK  
Sbjct: 68  RAASDENKSASTSIAGFKHKRRAVLKDVSNIFCENSHQNCIHATKQYTSKLARKCPPKTN 127

Query: 123 AKVSSDVCAENLLVEEDVKEKLAEELSKIRMGEPQEVTE-------------NTSECGKA 169
           A+V++ +  +   V+EDVKEKLAEELSKIRMGE Q  T               T E G A
Sbjct: 128 AEVAARISMKISPVQEDVKEKLAEELSKIRMGEAQNFTSPAKLEVKQDSLCHGTGEGGVA 187

Query: 170 DRNHPTHVSEKPFGLQGHQMREENNLCEELQ-SNGPSIVNIDSNLEDPQVCSLYAPDIYN 228
           D      VS K  G++    +E N + ++L  S+G S+V+ID N++DPQ CSLYAP IYN
Sbjct: 188 DPMLLIPVSTKFSGVESPLKKEVNEISKKLDASSGASVVDIDLNIKDPQFCSLYAPHIYN 247

Query: 229 NIRVTELDQRPSTTYMEKLQQDITPNMRGILIDWLVEVSEEYKLVPDTLYLTVNLIDRFL 288
           NIRV ELD RPS  YMEKLQ+DI+P MRGILIDWLVEVSEEY LVPDTLYLTVNLIDRFL
Sbjct: 248 NIRVKELDLRPSVDYMEKLQRDISPGMRGILIDWLVEVSEEYTLVPDTLYLTVNLIDRFL 307

Query: 289 SQNHIPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEVLKMESQVLNFLH 348
           SQN+I KQRLQL+GVTCMLIASKYEEII PR+E FCFITDNTYTR EVLKMESQVLNFL+
Sbjct: 308 SQNYIEKQRLQLLGVTCMLIASKYEEIIPPRVEGFCFITDNTYTRGEVLKMESQVLNFLY 367

Query: 349 FQLSVPTTKSFLRRFIQAAQASHKVSCLELEFLANYLAELTLLEYSFLRFRPSLVAASAV 408
           FQLSVPTTK+FLRRFIQAAQAS KV C+EL FLANYLAELTL+EY+FL+F PSL+AASAV
Sbjct: 368 FQLSVPTTKTFLRRFIQAAQASCKVPCVELVFLANYLAELTLVEYNFLKFLPSLIAASAV 427

Query: 409 FLAKWTLNQSEHPWNSTLEHYTSYKASELKCTVLALEDLQLNTDGCSLNAIREKYRQEKF 468
           FLA+WTLNQS+HPWNSTLEHYT Y ASELK TVL+LEDLQLNT+GC LNAIR+KYRQ+K 
Sbjct: 428 FLARWTLNQSDHPWNSTLEHYTRYTASELKTTVLSLEDLQLNTNGCCLNAIRDKYRQQKV 487

Query: 469 K 469
           K
Sbjct: 488 K 488

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224143050|ref|XP_002324834.1| predicted protein [Populus trichocarpa] gi|222866268|gb|EEF03399.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255551136|ref|XP_002516616.1| cyclin A, putative [Ricinus communis] gi|223544436|gb|EEF45957.1| cyclin A, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359476069|ref|XP_002281863.2| PREDICTED: cyclin-A2-2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449437114|ref|XP_004136337.1| PREDICTED: cyclin-A2-2-like [Cucumis sativus] gi|449503546|ref|XP_004162056.1| PREDICTED: cyclin-A2-2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|351723215|ref|NP_001237783.1| mitotic cyclin a2-type [Glycine max] gi|857395|dbj|BAA09465.1| mitotic cyclin a2-type [Glycine max] Back     alignment and taxonomy information
>gi|356515492|ref|XP_003526434.1| PREDICTED: cyclin-A2-2-like [Glycine max] Back     alignment and taxonomy information
>gi|849072|dbj|BAA09367.1| A-type cyclin [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|297812749|ref|XP_002874258.1| CYCA2_1 [Arabidopsis lyrata subsp. lyrata] gi|297320095|gb|EFH50517.1| CYCA2_1 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|297811243|ref|XP_002873505.1| hypothetical protein ARALYDRAFT_350326 [Arabidopsis lyrata subsp. lyrata] gi|297319342|gb|EFH49764.1| hypothetical protein ARALYDRAFT_350326 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query486
TAIR|locus:2148052436 CYC3B "mitotic-like cyclin 3B 0.578 0.644 0.736 7.8e-110
TAIR|locus:2034250461 CYCA2;4 "Cyclin A2;4" [Arabido 0.884 0.932 0.528 1.5e-108
TAIR|locus:2196563450 CYCA2;3 "CYCLIN A2;3" [Arabido 0.851 0.92 0.5 8.8e-102
TAIR|locus:2205871460 CYCA1;1 "Cyclin A1;1" [Arabido 0.773 0.817 0.467 6.9e-86
TAIR|locus:2031407442 CYCA1;2 "CYCLIN A1;2" [Arabido 0.849 0.934 0.433 6e-80
TAIR|locus:2167761355 CYCA3;1 "Cyclin A3;1" [Arabido 0.569 0.780 0.546 5.4e-79
TAIR|locus:2030648372 CYCA3;2 "cyclin-dependent prot 0.565 0.739 0.535 6.3e-76
TAIR|locus:2036756370 CYCA3;4 "CYCLIN A3;4" [Arabido 0.551 0.724 0.535 1.4e-73
TAIR|locus:2036761327 CYCA3;3 "Cyclin A3;3" [Arabido 0.580 0.862 0.519 4.8e-71
UNIPROTKB|P78396465 CCNA1 "Cyclin-A1" [Homo sapien 0.539 0.563 0.448 1.3e-54
TAIR|locus:2148052 CYC3B "mitotic-like cyclin 3B from Arabidopsis" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1085 (387.0 bits), Expect = 7.8e-110, P = 7.8e-110
 Identities = 207/281 (73%), Positives = 245/281 (87%)

Query:   206 IVNIDSNLEDPQVCSLYAPDIYNNIRVTELDQRPSTTYMEKLQQDITPNMRGILIDWLVE 265
             +V+IDSN+EDPQ CSLYA DIY+NI V EL QRP   YME +Q+DI P+MR ILIDWLVE
Sbjct:   156 VVDIDSNVEDPQCCSLYAADIYDNIHVAELQQRPLANYMELVQRDIDPDMRKILIDWLVE 215

Query:   266 VSEEYKLVPDTLYLTVNLIDRFLSQNHIPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCF 325
             VS++YKLVPDTLYLTVNLIDRFLS ++I +QRLQL+GV+CMLIASKYEE+ AP +EEFCF
Sbjct:   216 VSDDYKLVPDTLYLTVNLIDRFLSNSYIERQRLQLLGVSCMLIASKYEELSAPGVEEFCF 275

Query:   326 ITDNTYTREEVLKMESQVLNFLHFQLSVPTTKSFLRRFIQAAQASHKVSCLELEFLANYL 385
             IT NTYTR EVL ME Q+LNF+HF+LSVPTTK+FLRRFI+AAQAS+KV  +ELE+LANYL
Sbjct:   276 ITANTYTRPEVLSMEIQILNFVHFRLSVPTTKTFLRRFIKAAQASYKVPFIELEYLANYL 335

Query:   386 AELTLLEYSFLRFRPSLVAASAVFLAKWTLNQSEHPWNSTLEHYTSYKASELKCTVLALE 445
             AELTL+EYSFLRF PSL+AASAVFLA+WTL+Q++HPWN TL+HYT Y+ +ELK TVLA+E
Sbjct:   336 AELTLVEYSFLRFLPSLIAASAVFLARWTLDQTDHPWNPTLQHYTRYEVAELKNTVLAME 395

Query:   446 DLQLNTDGCSLNAIREKYRQEKFKCVATMTPTERVLSVFSR 486
             DLQLNT GC+L A REKY Q KFK VA +T  +RV S+FSR
Sbjct:   396 DLQLNTSGCTLAATREKYNQPKFKSVAKLTSPKRVTSLFSR 436
GO:0000079 "regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0010389 "regulation of G2/M transition of mitotic cell cycle" evidence=IEA;IGI
GO:0016538 "cyclin-dependent protein serine/threonine kinase regulator activity" evidence=ISS
GO:0019901 "protein kinase binding" evidence=IEA
GO:0051726 "regulation of cell cycle" evidence=IEA;ISS
GO:0005515 "protein binding" evidence=IPI
GO:0008283 "cell proliferation" evidence=IGI
GO:2000123 "positive regulation of stomatal complex development" evidence=IGI
GO:0010090 "trichome morphogenesis" evidence=RCA
GO:0042023 "DNA endoreduplication" evidence=RCA
GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA
GO:0043248 "proteasome assembly" evidence=RCA
GO:0051302 "regulation of cell division" evidence=RCA
GO:0051510 "regulation of unidimensional cell growth" evidence=RCA
GO:0051788 "response to misfolded protein" evidence=RCA
TAIR|locus:2034250 CYCA2;4 "Cyclin A2;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2196563 CYCA2;3 "CYCLIN A2;3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2205871 CYCA1;1 "Cyclin A1;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031407 CYCA1;2 "CYCLIN A1;2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2167761 CYCA3;1 "Cyclin A3;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2030648 CYCA3;2 "cyclin-dependent protein kinase 3;2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036756 CYCA3;4 "CYCLIN A3;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036761 CYCA3;3 "Cyclin A3;3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P78396 CCNA1 "Cyclin-A1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q39071CCA21_ARATHNo assigned EC number0.55410.90530.9932yesno
Q2QQ96CCA21_ORYSJNo assigned EC number0.51940.96700.9591yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00061782
hypothetical protein (495 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query486
pfam00134127 pfam00134, Cyclin_N, Cyclin, N-terminal domain 1e-60
COG5024440 COG5024, COG5024, Cyclin [Cell division and chromo 2e-46
pfam02984117 pfam02984, Cyclin_C, Cyclin, C-terminal domain 1e-42
cd0004388 cd00043, CYCLIN, Cyclin box fold 6e-24
smart0038583 smart00385, CYCLIN, domain present in cyclins, TFI 1e-19
smart0038583 smart00385, CYCLIN, domain present in cyclins, TFI 1e-17
cd0004388 cd00043, CYCLIN, Cyclin box fold 6e-17
>gnl|CDD|215740 pfam00134, Cyclin_N, Cyclin, N-terminal domain Back     alignment and domain information 
 Score =  194 bits (495), Expect = 1e-60
 Identities = 74/128 (57%), Positives = 99/128 (77%), Gaps = 1/128 (0%)

Query: 225 DIYNNIRVTELDQRPSTTYMEKLQQDITPNMRGILIDWLVEVSEEYKLVPDTLYLTVNLI 284
           DIY  +R  E + RP   Y+++ Q DI P MR ILIDWLVEV EE+KL+P+TLYL VN +
Sbjct: 1   DIYAYLRELEEEDRPPPDYLDQ-QPDINPKMRAILIDWLVEVHEEFKLLPETLYLAVNYL 59

Query: 285 DRFLSQNHIPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEVLKMESQVL 344
           DRFLS+  +P+ +LQLVGVTC+LIA+KYEEI  P +E+F +ITDN YT+EE+L+ME  +L
Sbjct: 60  DRFLSKQPVPRTKLQLVGVTCLLIAAKYEEIYPPSVEDFVYITDNAYTKEEILRMELLIL 119

Query: 345 NFLHFQLS 352
           + L++ LS
Sbjct: 120 STLNWDLS 127

Cyclins regulate cyclin dependent kinases (CDKs). Human cyclin-O is a Uracil-DNA glycosylase that is related to other cyclins. Cyclins contain two domains of similar all-alpha fold, of which this family corresponds with the N-terminal domain. Length = 127
>gnl|CDD|227357 COG5024, COG5024, Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|217307 pfam02984, Cyclin_C, Cyclin, C-terminal domain Back     alignment and domain information
>gnl|CDD|238003 cd00043, CYCLIN, Cyclin box fold Back     alignment and domain information
>gnl|CDD|214641 smart00385, CYCLIN, domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>gnl|CDD|214641 smart00385, CYCLIN, domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>gnl|CDD|238003 cd00043, CYCLIN, Cyclin box fold Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 486
KOG0654359 consensus G2/Mitotic-specific cyclin A [Cell cycle 100.0
KOG0653391 consensus Cyclin B and related kinase-activating p 100.0
COG5024440 Cyclin [Cell division and chromosome partitioning] 100.0
KOG0655408 consensus G1/S-specific cyclin E [Cell cycle contr 100.0
KOG0656335 consensus G1/S-specific cyclin D [Cell cycle contr 100.0
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 99.93
TIGR00569305 ccl1 cyclin ccl1. University). 99.9
KOG0834323 consensus CDK9 kinase-activating protein cyclin T 99.85
PF02984118 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR 99.84
KOG0835367 consensus Cyclin L [General function prediction on 99.83
KOG0794264 consensus CDK8 kinase-activating protein cyclin C 99.73
COG5333297 CCL1 Cdk activating kinase (CAK)/RNA polymerase II 99.72
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 99.48
PRK00423310 tfb transcription initiation factor IIB; Reviewed 99.43
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 99.41
KOG2496325 consensus Cdk activating kinase (CAK)/RNA polymera 99.34
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 98.71
KOG1597308 consensus Transcription initiation factor TFIIB [T 98.7
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 98.6
PF08613149 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eu 98.52
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 98.48
KOG4164497 consensus Cyclin ik3-1/CABLES [Cell cycle control, 97.84
KOG1598 521 consensus Transcription initiation factor TFIIIB, 97.09
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 96.08
KOG1674218 consensus Cyclin [General function prediction only 95.13
KOG1675343 consensus Predicted cyclin [General function predi 94.87
PRK00423310 tfb transcription initiation factor IIB; Reviewed 93.53
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 92.94
PF02984118 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR 91.9
KOG0834323 consensus CDK9 kinase-activating protein cyclin T 86.82
>KOG0654 consensus G2/Mitotic-specific cyclin A [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=9.2e-48  Score=391.80  Aligned_cols=271  Identities=59%  Similarity=0.910  Sum_probs=261.5

Q ss_pred             cCCCCCCCCcchhhchHHHHHHHHHHHHHh-cCCCcchhhhcCCCCCHHHHHHHHHHHHHHhhhcCcchHHHHHHHHHHH
Q 011434          207 VNIDSNLEDPQVCSLYAPDIYNNIRVTELD-QRPSTTYMEKLQQDITPNMRGILIDWLVEVSEEYKLVPDTLYLTVNLID  285 (486)
Q Consensus       207 ~did~d~~dp~~~seY~~dI~~~L~~~E~~-~~p~~~yl~~~Q~~It~~~R~~LVdWL~eV~~~l~L~~eTl~lAV~llD  285 (486)
                      .|||.+..||++|..|+.+|++|++..|.. .+|.++||+.+|.++|+.||.++|+|+++|++.+++..+++|++++++|
T Consensus        87 ~~~ds~~~dp~~c~~~~~~I~~~~r~~ei~~~rp~~~~~e~vq~d~t~smrgilvdwlvevsee~r~~~e~l~ls~~~~d  166 (359)
T KOG0654|consen   87 MRIDSVGEDPQMCLKIAAKIYNTLRVSDIKSERPLPSKFEFVQADITPSMRGILVDWLVEVSEEYRLTFETLYLSVNYRD  166 (359)
T ss_pred             cchhhcccchHHHHHHHHHHhhcccccchhhccCcccceeeeecCCCcchhhhhhhhhhHHHHHHHhhhhheeecHHHHH
Confidence            789999999999999999999999999999 9999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcCCCCcccchhhhhhhhhhhhccccccccCHHHHHhhhcCCCCHHHHHHHHHHHHHHcCCcccCCCchHHHHHHHH
Q 011434          286 RFLSQNHIPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEVLKMESQVLNFLHFQLSVPTTKSFLRRFIQ  365 (486)
Q Consensus       286 RfLs~~~i~~~~lqLva~TCL~IASK~EE~~~P~i~dl~~is~~~yt~~eIl~mE~~IL~~L~f~L~~pTp~~FL~~fl~  365 (486)
                      ||+....+.+.++|++|.+|++||+|+||+.+|.+++|++++++.|+..++..||..||..|.|.+..||...|+++|+.
T Consensus       167 rfl~~~~~~~~k~ql~g~s~m~I~sk~ee~~~~~~~ef~~itd~ty~~~qv~~~~~~il~~l~~~~~~pt~~~~l~~~~~  246 (359)
T KOG0654|consen  167 RFLSYKEVNKQKLQLVGISAMLIASKYEEIKEPRVEEFCYITDNTYTYWQVLRMEIDILNALTFELVRPTSKTFLRRFLR  246 (359)
T ss_pred             HHhccCccHHHHHHHhCcccceeeccchhhcchHHHHHHhhhhhhhHHHHHHHHHHHHHHHhHHHHhCchHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcccccHHHHHHHHHHHHHHHhchhcccccCHHHHHHHHHHHHHHHhCCCCCCCchhhHHhcCCChhhHHHHHHHHH
Q 011434          366 AAQASHKVSCLELEFLANYLAELTLLEYSFLRFRPSLVAASAVFLAKWTLNQSEHPWNSTLEHYTSYKASELKCTVLALE  445 (486)
Q Consensus       366 ~~~~~~~~~~~el~~lA~yLlelsL~d~~fl~y~PS~IAaAaI~LA~~~l~~~~~~W~~~L~~~tgY~~~dL~~~v~~L~  445 (486)
                      +.+.    +..+++.++.||.|+++.|+.|+.|.||.|||||++||+++++  .++|++.|+++|||+.+||++|+..|.
T Consensus       247 ~~~~----~~~~~e~~~~yl~elsll~~~~l~y~PSliAasAv~lA~~~~~--~~pW~~~L~~~T~y~~edl~~~v~~L~  320 (359)
T KOG0654|consen  247 VAQT----PELQVEPLANYLTELSLLDYIFLKYLPSLIAASAVFLARLTLD--FHPWNQTLEDYTGYKAEDLKPCVLDLH  320 (359)
T ss_pred             hhcc----hhHHHHHHHHHHHHhhhhhHHHhccChHHHHHHHHHHHHhhcc--CCCCchhhHHhhcccHHHHHHHHHHHh
Confidence            8875    4668899999999999999999999999999999999999999  489999999999999999999999999


Q ss_pred             HHHhhcCCCChhhhHhhhCCcccCceeccCCCcchhhhhc
Q 011434          446 DLQLNTDGCSLNAIREKYRQEKFKCVATMTPTERVLSVFS  485 (486)
Q Consensus       446 ~l~~~~~~~~l~aI~~KY~s~kf~~Vs~~~~P~~~~~~~~  485 (486)
                       ++++..++.+.+|++||++++|++|+.+++| +..++|.
T Consensus       321 -~~l~~~~~~l~air~ky~~~k~~~Va~~~~p-~p~~~~~  358 (359)
T KOG0654|consen  321 -LYLNASGTDLPAIREKYKQSKFKEVALLPVP-LPHTFVE  358 (359)
T ss_pred             -cccCCCCCchHHHHHHhhhhhhhhhhccCCC-Ccchhcc
Confidence             9999999999999999999999999999999 5566664

>KOG0653 consensus Cyclin B and related kinase-activating proteins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5024 Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0655 consensus G1/S-specific cyclin E [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0656 consensus G1/S-specific cyclin D [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>TIGR00569 ccl1 cyclin ccl1 Back     alignment and domain information
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG0835 consensus Cyclin L [General function prediction only] Back     alignment and domain information
>KOG0794 consensus CDK8 kinase-activating protein cyclin C [Transcription] Back     alignment and domain information
>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>KOG2496 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair] Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>KOG1597 consensus Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>KOG4164 consensus Cyclin ik3-1/CABLES [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1598 consensus Transcription initiation factor TFIIIB, Brf1 subunit [Transcription] Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG1674 consensus Cyclin [General function prediction only] Back     alignment and domain information
>KOG1675 consensus Predicted cyclin [General function prediction only] Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query486
4bcq_D262 Structure Of Cdk2 In Complex With Cyclin A And A 2- 2e-49
3dog_B264 Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN 2e-49
2g9x_B262 Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN 2e-49
1vin_A268 Bovine Cyclin A3 Length = 268 2e-49
3ddq_B269 Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN 2e-49
3ddp_B268 Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN 2e-49
3bht_B262 Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN 2e-49
4bco_B262 Structure Of Cdk2 In Complex With Cyclin A And A 2- 4e-49
3qhr_B261 Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic 6e-49
4ii5_B258 Structure Of Pcdk2/cyclina Bound To Adp And 1 Magne 7e-49
4i3z_B257 Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNES 7e-49
1vyw_B265 Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 7e-49
1jst_B258 Phosphorylated Cyclin-Dependent Kinase-2 Bound To C 8e-49
1qmz_B259 Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Com 9e-49
1fin_B260 Cyclin A-Cyclin-Dependent Kinase 2 Complex Length = 9e-49
1ogu_B260 Structure Of Human Thr160-phospho Cdk2/cyclin A Com 1e-48
2x1n_B261 Truncation And Optimisation Of Peptide Inhibitors O 1e-48
3f5x_B256 Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Boun 1e-48
1e9h_B261 Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex 2e-48
4bcq_B262 Structure Of Cdk2 In Complex With Cyclin A And A 2- 2e-48
2jgz_B260 Crystal Structure Of Phospho-Cdk2 In Complex With C 2e-47
2b9r_A269 Crystal Structure Of Human Cyclin B1 Length = 269 3e-47
1w98_B283 The Structural Basis Of Cdk2 Activation By Cyclin E 1e-22
3g33_B306 Crystal Structure Of Cdk4CYCLIN D3 Length = 306 2e-19
2w9z_A257 Crystal Structure Of Cdk4 In Complex With A D-Type 3e-19
2w96_A271 Crystal Structure Of Cdk4 In Complex With A D-Type 3e-19
1jow_A254 Crystal Structure Of A Complex Of Human Cdk6 And A 8e-13
1bu2_A229 X-Ray Structure Of A Viral Cyclin From Herpesvirus 7e-12
1g3n_C257 Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Com 4e-10
>pdb|4BCQ|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 262 Back     alignment and structure 
Iteration: 1

 Score =  193 bits (491), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 110/258 (42%), Positives = 158/258 (61%), Gaps = 8/258 (3%)
Query: 222 YAPDIYNNIRVTELDQRPSTTYMEKLQQDITPNMRGILIDWLVEVSEEYKLVPDTLYLTV 281
           Y  DI+  +R  E+  +P   YM+K Q DIT +MR IL+DWLVEV EEYKL  +TL+L V
Sbjct: 8   YHEDIHTYLREMEVKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 66
Query: 282 NLIDRFLSQNHIPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEVLKMES 341
           N IDRFLS   + + +LQLVG   ML+ASK+EEI  P + EF +ITD+TYT+++VL+ME 
Sbjct: 67  NYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEH 126
Query: 342 QVLNFLHFQLSVPTTKSFLRRFIQAAQASHKVSCLELEFLANYLAELTLLEYS-FLRFRP 400
            VL  L F L+ PT   FL ++    Q +   +C ++E LA +L EL+L++   +L++ P
Sbjct: 127 LVLKVLTFDLAAPTVNQFLTQYFLHQQPA---NC-KVESLAMFLGELSLIDADPYLKYLP 182
Query: 401 SLVAASAVFLAKWTLNQSEHPWNSTLEHYTSYKASELKCTVLALEDLQLNTDGCSLNAIR 460
           S++AA+A  LA +T+      W  +L   T Y    LK  +L L    L     +  +IR
Sbjct: 183 SVIAAAAFHLALYTVTGQS--WPESLIRKTGYTLESLKPMLLDLHQTYLKAPQHAQQSIR 240
Query: 461 EKYRQEKFKCVATMTPTE 478
           EKY+  K+  V+ + P E
Sbjct: 241 EKYKNSKYHGVSLLNPPE 258
>pdb|3DOG|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN Complex With The Inhibitor N-&-N1 Length = 264 Back     alignment and structure
>pdb|2G9X|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Nu6271 Length = 262 Back     alignment and structure
>pdb|1VIN|A Chain A, Bovine Cyclin A3 Length = 268 Back     alignment and structure
>pdb|3DDQ|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX With The Inhibitor Roscovitine Length = 269 Back     alignment and structure
>pdb|3DDP|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX With The Inhibitor Cr8 Length = 268 Back     alignment and structure
>pdb|3BHT|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Meriolin 3 Length = 262 Back     alignment and structure
>pdb|4BCO|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 262 Back     alignment and structure
>pdb|3QHR|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic Length = 261 Back     alignment and structure
>pdb|4II5|B Chain B, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium Ion Length = 258 Back     alignment and structure
>pdb|4I3Z|B Chain B, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM IONS Length = 257 Back     alignment and structure
>pdb|1VYW|B Chain B, Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 265 Back     alignment and structure
>pdb|1JST|B Chain B, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A Length = 258 Back     alignment and structure
>pdb|1QMZ|B Chain B, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex Length = 259 Back     alignment and structure
>pdb|1FIN|B Chain B, Cyclin A-Cyclin-Dependent Kinase 2 Complex Length = 260 Back     alignment and structure
>pdb|1OGU|B Chain B, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed With A 2-arylamino-4-cyclohexylmethyl-5-nitroso-6- aminopyrimidine Inhibitor Length = 260 Back     alignment and structure
>pdb|2X1N|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2, Cyclin A Through Structure Guided Design Length = 261 Back     alignment and structure
>pdb|3F5X|B Chain B, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At Its Active Site Length = 256 Back     alignment and structure
>pdb|1E9H|B Chain B, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With The Inhibitor Indirubin-5-Sulphonate Bound Length = 261 Back     alignment and structure
>pdb|4BCQ|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 262 Back     alignment and structure
>pdb|2JGZ|B Chain B, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B Length = 260 Back     alignment and structure
>pdb|2B9R|A Chain A, Crystal Structure Of Human Cyclin B1 Length = 269 Back     alignment and structure
>pdb|1W98|B Chain B, The Structural Basis Of Cdk2 Activation By Cyclin E Length = 283 Back     alignment and structure
>pdb|3G33|B Chain B, Crystal Structure Of Cdk4CYCLIN D3 Length = 306 Back     alignment and structure
>pdb|2W9Z|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 257 Back     alignment and structure
>pdb|2W96|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 271 Back     alignment and structure
>pdb|1JOW|A Chain A, Crystal Structure Of A Complex Of Human Cdk6 And A Viral Cyclin Length = 254 Back     alignment and structure
>pdb|1BU2|A Chain A, X-Ray Structure Of A Viral Cyclin From Herpesvirus Saimiri Length = 229 Back     alignment and structure
>pdb|1G3N|C Chain C, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex Length = 257 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query486
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 1e-128
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 1e-126
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 1e-123
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 1e-121
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 1e-121
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 1e-117
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 1e-110
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 1e-99
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 1e-23
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 1e-11
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 1e-11
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 3e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-10
2ivx_A257 Cyclin-T2; transcription regulation, cell division 4e-09
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 2e-06
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Length = 260 Back     alignment and structure
 Score =  372 bits (958), Expect = e-128
 Identities = 107/261 (40%), Positives = 155/261 (59%), Gaps = 8/261 (3%)

Query: 219 CSLYAPDIYNNIRVTELDQRPSTTYMEKLQQDITPNMRGILIDWLVEVSEEYKLVPDTLY 278
              Y  DI+  +R  E+  +P   YM+K Q DIT +MR IL+DWLVEV EEYKL  +TL+
Sbjct: 3   VPDYHEDIHTYLREMEVKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLH 61

Query: 279 LTVNLIDRFLSQNHIPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEVLK 338
           L VN IDRFLS   + + +LQLVG   ML+ASK+EEI  P + EF +ITD+TYT+++VL+
Sbjct: 62  LAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLR 121

Query: 339 MESQVLNFLHFQLSVPTTKSFLRRFIQAAQASHKVSCLELEFLANYLAELTLLEYS-FLR 397
           ME  VL  L F L+ PT   FL ++    Q     +  ++E LA +L EL+L++   +L+
Sbjct: 122 MEHLVLKVLTFDLAAPTVNQFLTQYFLHQQP----ANCKVESLAMFLGELSLIDADPYLK 177

Query: 398 FRPSLVAASAVFLAKWTLNQSEHPWNSTLEHYTSYKASELKCTVLALEDLQLNTDGCSLN 457
           + PS++A +A  LA +T+      W  +L   T Y    LK  ++ L    L     +  
Sbjct: 178 YLPSVIAGAAFHLALYTVTG--QSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQ 235

Query: 458 AIREKYRQEKFKCVATMTPTE 478
           +IREKY+  K+  V+ + P E
Sbjct: 236 SIREKYKNSKYHGVSLLNPPE 256
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Length = 269 Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 306 Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Length = 254 Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Length = 271 Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 283 Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Length = 257 Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Length = 252 Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 258 Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Length = 323 Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Length = 235 Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Length = 358 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Length = 257 Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 285 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query486
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 100.0
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 100.0
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 100.0
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 100.0
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 100.0
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 100.0
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 100.0
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 100.0
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 100.0
2ivx_A257 Cyclin-T2; transcription regulation, cell division 100.0
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 100.0
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 100.0
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 100.0
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 99.98
1c9b_A207 General transcription factor IIB; protein-DNA comp 99.94
1ais_B200 TFB TFIIB, protein (transcription initiation facto 99.88
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 99.7
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 99.2
2pmi_B293 PHO85 cyclin PHO80, aminoglycoside anti; cyclin-de 98.33
1ais_B200 TFB TFIIB, protein (transcription initiation facto 96.38
1c9b_A207 General transcription factor IIB; protein-DNA comp 93.58
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 87.18
2ivx_A257 Cyclin-T2; transcription regulation, cell division 87.04
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 85.3
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 84.58
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 81.67
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
Probab=100.00  E-value=1.1e-54  Score=429.91  Aligned_cols=256  Identities=42%  Similarity=0.697  Sum_probs=242.9

Q ss_pred             hhchHHHHHHHHHHHHHhcCCCcchhhhcCCCCCHHHHHHHHHHHHHHhhhcCcchHHHHHHHHHHHhhhhcCCCCcccc
Q 011434          219 CSLYAPDIYNNIRVTELDQRPSTTYMEKLQQDITPNMRGILIDWLVEVSEEYKLVPDTLYLTVNLIDRFLSQNHIPKQRL  298 (486)
Q Consensus       219 ~seY~~dI~~~L~~~E~~~~p~~~yl~~~Q~~It~~~R~~LVdWL~eV~~~l~L~~eTl~lAV~llDRfLs~~~i~~~~l  298 (486)
                      |++|++|||.||+..|.++.|.++||.. |++|++.||.++||||++|+..|++.++|+++||+|||||++...+.+.++
T Consensus         3 ~~eY~~di~~~l~~~E~~~~p~~~y~~~-q~~i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~l   81 (260)
T 2cch_B            3 VPDYHEDIHTYLREMEVKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKL   81 (260)
T ss_dssp             CCTTHHHHHHHHHHHHHHTCCCTTGGGG-CSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_pred             hHhHHHHHHHHHHHHHhhcCCCchhhhc-CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHHH
Confidence            7899999999999999999999999986 999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhhhccccccccCHHHHHhhhcCCCCHHHHHHHHHHHHHHcCCcccCCCchHHHHHHHHHHhhcccccHHHH
Q 011434          299 QLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEVLKMESQVLNFLHFQLSVPTTKSFLRRFIQAAQASHKVSCLEL  378 (486)
Q Consensus       299 qLva~TCL~IASK~EE~~~P~i~dl~~is~~~yt~~eIl~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~~~~~~~~~~el  378 (486)
                      ||+|+||||||||+||.++|.+.+|+.++++.|++++|.+||+.||++|+|++++|||++||.+|+..++.+    ..++
T Consensus        82 qlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~----~~~~  157 (260)
T 2cch_B           82 QLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPA----NCKV  157 (260)
T ss_dssp             HHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSC----CHHH
T ss_pred             hHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCC----hHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999876532    2367


Q ss_pred             HHHHHHHHHHHhchhc-ccccCHHHHHHHHHHHHHHHhCCCCCCCchhhHHhcCCChhhHHHHHHHHHHHHhhcCCCChh
Q 011434          379 EFLANYLAELTLLEYS-FLRFRPSLVAASAVFLAKWTLNQSEHPWNSTLEHYTSYKASELKCTVLALEDLQLNTDGCSLN  457 (486)
Q Consensus       379 ~~lA~yLlelsL~d~~-fl~y~PS~IAaAaI~LA~~~l~~~~~~W~~~L~~~tgY~~~dL~~~v~~L~~l~~~~~~~~l~  457 (486)
                      ..+|+|++++++.|+. |+.|+||.||||||++|+..++.  +.|...+.+++||+.++|.+|+..|.+++.+....++.
T Consensus       158 ~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~--~~w~~~l~~~~g~~~~~i~~~~~~l~~~~~~~~~~~~~  235 (260)
T 2cch_B          158 ESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTG--QSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQ  235 (260)
T ss_dssp             HHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHS--CCSCHHHHHHHCCCHHHHHHHHHHHHHHHHHGGGSSCC
T ss_pred             HHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCC--CcchHHHHHHhCcCHHHHHHHHHHHHHHHHhcCCcchH
Confidence            8899999999999999 99999999999999999999985  68999999999999999999999999998887777889


Q ss_pred             hhHhhhCCcccCceeccCCCcchh
Q 011434          458 AIREKYRQEKFKCVATMTPTERVL  481 (486)
Q Consensus       458 aI~~KY~s~kf~~Vs~~~~P~~~~  481 (486)
                      +|++||++++|++||.+++|+.++
T Consensus       236 ~i~~Ky~~~~~~~vs~~~~~~~~~  259 (260)
T 2cch_B          236 SIREKYKNSKYHGVSLLNPPETLN  259 (260)
T ss_dssp             HHHHHHTSGGGTTGGGSCCCSCCC
T ss_pred             HHHHHHCcccccceeCCCCcccCC
Confidence            999999999999999999998763
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B* Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 486
d1w98b2140 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human 3e-50
d1bu2a1127 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saim 3e-49
d1g3nc1132 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma 1e-48
d2cchb1128 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [T 2e-48
d1f5qb1141 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesviru 3e-44
d2cchb2124 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [T 6e-39
d2i53a1144 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) 2e-31
d2ivxa1143 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) 1e-26
d1jkwa1151 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo s 2e-23
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Length = 140 Back     information, alignment and structure

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: G1/S-specific cyclin-E1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  165 bits (420), Expect = 3e-50
 Identities = 45/139 (32%), Positives = 78/139 (56%), Gaps = 2/139 (1%)

Query: 215 DPQVCSLYAPDIYNNIRVTELDQRPSTTYMEKLQQDITPNMRGILIDWLVEVSEEYKLVP 274
            P +      +++  +   E        ++E+    + P MR IL+DWL+EV E YKL  
Sbjct: 3   LPVLSWANREEVWKIMLNKEKTYLRDQHFLEQ-HPLLQPKMRAILLDWLMEVCEVYKLHR 61

Query: 275 DTLYLTVNLIDRFLSQNH-IPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTR 333
           +T YL  +  DR+++    + K  LQL+G++ + IA+K EEI  P+L +F ++TD   + 
Sbjct: 62  ETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSG 121

Query: 334 EEVLKMESQVLNFLHFQLS 352
           +E+L ME  ++  L ++LS
Sbjct: 122 DEILTMELMIMKALKWRLS 140
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Length = 127 Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Length = 132 Back     information, alignment and structure
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Length = 128 Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Length = 141 Back     information, alignment and structure
>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Length = 124 Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Length = 144 Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Length = 143 Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Length = 151 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query486
d1w98b2140 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 100.0
d1g3nc1132 Viral cyclin {Kaposi's sarcoma-associated herpesvi 100.0
d2cchb1128 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1bu2a1127 Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} 99.97
d1f5qb1141 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 99.95
d2cchb2124 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 99.9
d2i53a1144 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 99.8
d1jkwa1151 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 99.76
d2ivxa1143 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 99.74
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 98.19
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 98.15
d1w98b1130 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 98.02
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 97.73
d1jkwa2126 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 97.7
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 97.57
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 97.22
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 97.2
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 97.06
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 96.44
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 95.76
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 95.26
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 94.93
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 93.14
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: G1/S-specific cyclin-E1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.8e-34  Score=255.05  Aligned_cols=138  Identities=33%  Similarity=0.635  Sum_probs=132.2

Q ss_pred             CCcchhhchHHHHHHHHHHHHHhcCCCcchhhhcCCCCCHHHHHHHHHHHHHHhhhcCcchHHHHHHHHHHHhhhhcC-C
Q 011434          214 EDPQVCSLYAPDIYNNIRVTELDQRPSTTYMEKLQQDITPNMRGILIDWLVEVSEEYKLVPDTLYLTVNLIDRFLSQN-H  292 (486)
Q Consensus       214 ~dp~~~seY~~dI~~~L~~~E~~~~p~~~yl~~~Q~~It~~~R~~LVdWL~eV~~~l~L~~eTl~lAV~llDRfLs~~-~  292 (486)
                      .+|.+|..|++|||.+|+.+|..+.+.++|+.. |+++++.||.++|+||++++..++++++|+|+||+||||||+.. .
T Consensus         2 ~~p~~~~~~~~dI~~~l~~~E~~~~~~~~~l~~-q~~i~~~~R~~lidW~~~v~~~~~l~~et~~lAv~llDryl~~~~~   80 (140)
T d1w98b2           2 PLPVLSWANREEVWKIMLNKEKTYLRDQHFLEQ-HPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQEN   80 (140)
T ss_dssp             CSCCCSSSCHHHHHHHHHHHTTTSCCCTTGGGG-CTTCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCC
T ss_pred             CCccccccCHHHHHHHHHHHHHhhCCChHHHhC-CCCCCHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhcccc
Confidence            468999999999999999999999988999976 89999999999999999999999999999999999999999854 6


Q ss_pred             CCcccchhhhhhhhhhhhccccccccCHHHHHhhhcCCCCHHHHHHHHHHHHHHcCCccc
Q 011434          293 IPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEVLKMESQVLNFLHFQLS  352 (486)
Q Consensus       293 i~~~~lqLva~TCL~IASK~EE~~~P~i~dl~~is~~~yt~~eIl~mE~~IL~~L~f~L~  352 (486)
                      +.++++||+|+||||||+|+||..+|.+.+|+.++++.|+.++|++||..||++|+|+|+
T Consensus        81 v~~~~lqL~a~acL~IAsK~ee~~~~~~~~l~~~~~~~~t~~ei~~mE~~IL~~L~~~Ln  140 (140)
T d1w98b2          81 VVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLS  140 (140)
T ss_dssp             CCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHHHHHHHHHHHTTTCCC
T ss_pred             ccHHHHhHHHHHHHHHHHHHcccCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHCCCcCC
Confidence            899999999999999999999999999999999999999999999999999999999985
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Back     information, alignment and structure
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure
>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w98b1 a.74.1.1 (B:228-357) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa2 a.74.1.1 (A:162-287) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure