Citrus Sinensis ID: 011445

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-----

MLELADKESPHLFENNLAIMLTSCLQLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKSLKLQPVLERDAFFLIRRIGRNLMETVQPPILTSSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLTFCLDGCEIGCHDGWQFHESGFI

cEEEEccccccccHHHHHHHHHccccccEEEEEEcccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccHHHHHHcccccccEEEEEcccccHHHHHHHHHccccccEEEccccccccccccccccHHHHHHccccccccEEEcccccccccccccccccHHHHHHHHccccccEEEEcccccccHHHHHHHHHccccccEEEEcccccccHHHHHHHHcccccccEEEccccccccHHHHHHHHccccccEEEcccccccccHHHHHccccccccEEEcccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccccccEEEccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHHcccccccccccEEEccccccccHHHHHHHHccccccccEEEccccccccccHHHHHHHHccccccEEcccccHHHHHHHHHHHHcccc

cccccHHHcccccHHHHHHHHHccccHHEEEEcccccccccccccHHHHcccccHccccccHHHHHHcccccHHHHHccccccccccHHHHHHHcccccccEEEEccccccHHHHHHHHHccccccEEEcccccccccHHHHHHHHHHHHHHHccccccEEEccccHHccHHHHHcccHHHHHHHHHccccccEEEccccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHccccccEEEccccccccHHHHHHHHccccccEEEcccccccHHHHHHHHHccccccEEEcccccHccHHHHHHHHHHcccccccccEEEccccccccHHHHHHHHHHcccccEEEcccccHccHHHHHHHHHHcccccccccccEEEccccHHccHHHHHHHHHcccHHHEEEEEcccccccccHHHHHHHHHccccEEEEEcccccccccccHHHHcccc

mleladkesphlFENNLAIMLTSCLQLESLSLKIRGFGVEVDACAFQSIIFFLpstikslklqpvlerDAFFLIRRIGRNlmetvqppiltssyyssfnLRSLSLVLDVITDELLITITASLPflveldledrpnteplarldltssglqslgschhltglsltrcrhnhqgtfkRVNDMGMFLLSegckglesvrlggfskvsdAGFAAILLSCHSLKKFEVrsasflsdlafhdltgvpCALVEVRLLWCRLITSETVKKLAssrnlevldlggcksiaDTCLRSISCLRKLTalnltgaditdsglsilaqgnlpimnlclrgckrvtdkgishllcvggtisqslttldlgympgisddgILTIAAAGIGIIDLCVRSCFYVTDASVEALArkqpdqekSKQLRRLDlcnciglsvdslrwvkrpsfrglhwlgigqtrlaskgnpviteihnerpwltfcldgceigchdgwqfhesgfi

mleladkespHLFENNLAIMLTSCLQLESLSLKIRGFGVEVDACAFQSIIFFLPstikslklqpVLERDAFFLIRRIGRNLMETVQPPILTSSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSEtvkklassrnlevldlggckSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEAlarkqpdqekskqlrrldlcnciglsvdslrwvKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLTFCLDGCEIGCHDGWQFHESGFI

MLELADKESPHLFENNLAIMLTSCLQLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKSLKLQPVLERDAFFLIRRIGRNLMETVQPPILTSSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISddgiltiaaagigiidlCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLTFCLDGCEIGCHDGWQFHESGFI

***********LFENNLAIMLTSCLQLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKSLKLQPVLERDAFFLIRRIGRNLMETVQPPILTSSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLED*******ARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEA*************LRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLTFCLDGCEIGCHDGWQFH*****

MLELADKESPHLFENNLAIMLTSCLQLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKSLKLQPVLERDAFFLIRRIGRNLMETVQPPILTSSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALAR**********LRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLTFCLDGCEIGCHDGWQFHESGFI

*LELADKESPHLFENNLAIMLTSCLQLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKSLKLQPVLERDAFFLIRRIGRNLMETVQPPILTSSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLTFCLDGCEIGCHDGWQFHESGFI

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		485	2.2.26 [Sep-21-2011]
Q9ZWC6		607	F-box protein At-B OS=Ara	yes	no	0.983	0.785	0.589	1e-155
Q9SDA8		656	F-box/LRR-repeat protein	no	no	0.771	0.570	0.402	2e-65
C8V4D4		585	SCF E3 ubiquitin ligase c	yes	no	0.564	0.468	0.248	1e-14
Q8N1E6		418	F-box/LRR-repeat protein	yes	no	0.567	0.657	0.288	6e-14
Q8BID8		400	F-box/LRR-repeat protein	yes	no	0.567	0.687	0.288	7e-14
Q17R01		400	F-box/LRR-repeat protein	yes	no	0.567	0.687	0.288	7e-14
Q8BH16		423	F-box/LRR-repeat protein	no	no	0.498	0.572	0.277	3e-12
Q8NEE6		735	F-box/LRR-repeat protein	no	no	0.649	0.428	0.247	3e-12
Q9C5D2		610	F-box/LRR-repeat protein	no	no	0.447	0.355	0.25	3e-12
Q96IG2		436	F-box/LRR-repeat protein	no	no	0.488	0.543	0.253	4e-12

>sp\|Q9ZWC6\|ATB_ARATH F-box protein At-B OS=Arabidopsis thaliana GN=ATB PE=2 SV=1	Back alignment and function desciption

 Score =  549 bits (1414), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 284/482 (58%), Positives = 354/482 (73%), Gaps = 5/482 (1%)

Query: 2   LELADKESPHLFENNLAIMLTSCLQLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKSLK 61
           LE+AD +SP +F++NL  ML  C  LESL L IRG  + VDA AFQS+ F LP T+K+L+
Sbjct: 123 LEMADLDSPDVFQSNLTQMLNGCPYLESLQLNIRG--ILVDATAFQSVRFSLPETLKALR 180

Query: 62  LQPVLERDAFFLIRRIGRNLMETVQPPILTS--SYYSSFNLRSLSLVLDVITDELLITIT 119
           LQP+LE +A  L+ R         QP   ++  S   SF L+SLSLVLD+I+D L+I IT
Sbjct: 181 LQPLLESEAILLMNRFKVTGTYLSQPDYNSALLSPSPSFTLQSLSLVLDLISDRLIIAIT 240

Query: 120 ASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVND 179
            SLP LV+LDLEDRP  EP    DLT +GLQ+LG C  LT LSL R  +N + +FKR+ND
Sbjct: 241 GSLPQLVKLDLEDRPEKEPFPDNDLTYTGLQALGFCQQLTSLSLVRTCYNRKISFKRIND 300

Query: 180 MGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTG 239
           MG+FLLSE CKGLESVRLGGF KVSDAGFA++L SC +LKKFEVR A  LSDLAFHD+TG
Sbjct: 301 MGIFLLSEACKGLESVRLGGFPKVSDAGFASLLHSCRNLKKFEVRGAFLLSDLAFHDVTG 360

Query: 240 VPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNL 299
             C+L EVRL  C LITSE VKKL    NLEVLDLG CKSI+D+CL S+S LRKLT+LNL
Sbjct: 361 SSCSLQEVRLSTCPLITSEAVKKLGLCGNLEVLDLGSCKSISDSCLNSVSALRKLTSLNL 420

Query: 300 TGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPG 359
            GAD+TDSG+  L + ++PI  L LRGC+RV+D+GIS+LL   GTIS++L+TLDLG+MPG
Sbjct: 421 AGADVTDSGMLALGKSDVPITQLSLRGCRRVSDRGISYLLNNEGTISKTLSTLDLGHMPG 480

Query: 360 ISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQE-KSKQLRRLDLCNCIGL 418
           ISD  I TI      + +L +RSCF+VTD+S+E+LA  +   E  SKQLR+L++ NC+ L
Sbjct: 481 ISDRAIHTITHCCKALTELSIRSCFHVTDSSIESLATWERQAEGGSKQLRKLNVHNCVSL 540

Query: 419 SVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLTFCLDGCEIGCHDGWQ 478
           +  +LRW+ +PSF GLHWLG+GQTR A +   V   I  +RPWLT C DGCE+GC DGW+
Sbjct: 541 TTGALRWLSKPSFAGLHWLGMGQTRFAGRKETVTAMICGQRPWLTLCFDGCELGCSDGWE 600

Query: 479 FH 480
           FH
Sbjct: 601 FH 602

Arabidopsis thaliana (taxid: 3702)

>sp\|Q9SDA8\|FBL10_ARATH F-box/LRR-repeat protein 10 OS=Arabidopsis thaliana GN=FBL10 PE=2 SV=1	Back alignment and function description

>sp\|C8V4D4\|GRRA_EMENI SCF E3 ubiquitin ligase complex F-box protein grrA OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=grrA PE=2 SV=1	Back alignment and function description

>sp\|Q8N1E6\|FXL14_HUMAN F-box/LRR-repeat protein 14 OS=Homo sapiens GN=FBXL14 PE=1 SV=1	Back alignment and function description

>sp\|Q8BID8\|FXL14_MOUSE F-box/LRR-repeat protein 14 OS=Mus musculus GN=Fbxl14 PE=2 SV=1	Back alignment and function description

>sp\|Q17R01\|FXL14_BOVIN F-box/LRR-repeat protein 14 OS=Bos taurus GN=FBXL14 PE=2 SV=1	Back alignment and function description

>sp\|Q8BH16\|FBXL2_MOUSE F-box/LRR-repeat protein 2 OS=Mus musculus GN=Fbxl2 PE=1 SV=1	Back alignment and function description

>sp\|Q8NEE6\|FXL13_HUMAN F-box/LRR-repeat protein 13 OS=Homo sapiens GN=FBXL13 PE=2 SV=3	Back alignment and function description

>sp\|Q9C5D2\|FBL4_ARATH F-box/LRR-repeat protein 4 OS=Arabidopsis thaliana GN=FBL4 PE=2 SV=1	Back alignment and function description

>sp\|Q96IG2\|FXL20_HUMAN F-box/LRR-repeat protein 20 OS=Homo sapiens GN=FBXL20 PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		485
224122212		588	predicted protein [Populus trichocarpa]	0.952	0.785	0.635	1e-166
359494372		619	PREDICTED: F-box protein At-B-like [Viti	0.975	0.764	0.644	1e-163
296090049		607	unnamed protein product [Vitis vinifera]	0.977	0.780	0.643	1e-163
13620167		606	hypothetical protein [Capsella rubella]	0.979	0.783	0.590	1e-155
297853262		606	F-box family protein [Arabidopsis lyrata	0.979	0.783	0.585	1e-154
15222749		607	F-box protein At-B [Arabidopsis thaliana	0.983	0.785	0.589	1e-153
13619398		601	hypothetical protein [Arabidopsis thalia	0.983	0.793	0.589	1e-153
147835484		2706	hypothetical protein VITISV_021632 [Viti	0.913	0.163	0.596	1e-148
350540100		607	uncharacterized protein LOC778198 [Solan	0.938	0.749	0.514	1e-118
222640813		619	hypothetical protein OsJ_27827 [Oryza sa	0.938	0.735	0.482	2e-98

>gi\|224122212\|ref\|XP_002330567.1\| predicted protein [Populus trichocarpa] gi\|222872125\|gb\|EEF09256.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  590 bits (1520), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 305/480 (63%), Positives = 364/480 (75%), Gaps = 18/480 (3%)

Query: 2   LELADKESPH-LFENNLAIMLTSCLQLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKSL 60
           +E AD+ SP  LF  N+A ML  C  LE     I+G   EVDA AFQS+ F LP +IK L
Sbjct: 124 VEFADQGSPPILFRKNVAYMLNKCQYLE-----IKG--TEVDASAFQSMEFSLPRSIKFL 176

Query: 61  KLQPVLERDAFFLIRRIGRNLMETVQPPILTSSYYSSFNLRSLSLVLDVITDELLITITA 120
           KL+P+LE +A  L  R+           +  S   S F L+ LSL+LDVI+D LL+ I+ 
Sbjct: 177 KLKPMLENNAIHLANRLR----------VSKSPSSSGFVLQFLSLLLDVISDRLLVAISN 226

Query: 121 SLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDM 180
           SLP LVEL LEDRP+ EPL  LDLT+ GL  LG CH LT LSL R R N+QG+FKR+NDM
Sbjct: 227 SLPLLVELHLEDRPDKEPLPGLDLTNGGLHFLGCCHFLTDLSLKRSRQNYQGSFKRINDM 286

Query: 181 GMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGV 240
           GMFLLS+ C+ LESVRL GFSKVSDAGFA++L +C  LKKFEVR+A  LSDLAFHDL   
Sbjct: 287 GMFLLSQRCQALESVRLSGFSKVSDAGFASLLHTCQKLKKFEVRNAFLLSDLAFHDLIQA 346

Query: 241 PCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLT 300
           PC LVEVRLL C LITSETVKKLA SR+LEVLDL GCKS+AD+CL SISCL++LT LNLT
Sbjct: 347 PCTLVEVRLLSCGLITSETVKKLAFSRSLEVLDLCGCKSVADSCLSSISCLQRLTTLNLT 406

Query: 301 GADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGI 360
           GADITDSGLS++ QGN PI  LCLRGCKR+TDKGIS LLC GG I+ +L+ LDLGYMPGI
Sbjct: 407 GADITDSGLSVIGQGNTPISYLCLRGCKRITDKGISFLLCGGGAIALTLSALDLGYMPGI 466

Query: 361 SDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSV 420
           SD+GILTIA  G  I +LC+RSCFYVTD ++ ALA K+  Q++SKQL R+D+ NC+GLS 
Sbjct: 467 SDNGILTIATFGREITELCIRSCFYVTDLAMRALAAKRRSQDRSKQLCRVDIFNCVGLSA 526

Query: 421 DSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLTFCLDGCEIGCHDGWQFH 480
           D+L+ +++P FRGLHW+GIG+T L+S    +ITEI  ERPWLT CLDGCE+ CHDGWQFH
Sbjct: 527 DALKLLRKPLFRGLHWIGIGKTHLSSNEGTMITEIQKERPWLTLCLDGCEMQCHDGWQFH 586

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359494372\|ref\|XP_002265565.2\| PREDICTED: F-box protein At-B-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|296090049\|emb\|CBI39868.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|13620167\|emb\|CAC36388.1\| hypothetical protein [Capsella rubella]	Back alignment and taxonomy information

>gi\|297853262\|ref\|XP_002894512.1\| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi\|297340354\|gb\|EFH70771.1\| F-box family protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi|15222749|ref|NP_175955.1| F-box protein At-B [Arabidopsis thaliana] gi|75339120|sp|Q9ZWC6.1|ATB_ARATH RecName: Full=F-box protein At-B gi|8778504|gb|AAF79512.1|AC002328_20 F20N2.2 [Arabidopsis thaliana] gi|20856547|gb|AAM26672.1| At1g55590/F20N2_18 [Arabidopsis thaliana] gi|24111385|gb|AAN46816.1| At1g55590/F20N2_18 [Arabidopsis thaliana] gi|332195148|gb|AEE33269.1| F-box protein At-B [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|13619398\|emb\|CAC36384.1\| hypothetical protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|147835484\|emb\|CAN77480.1\| hypothetical protein VITISV_021632 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|350540100\|ref\|NP_001234642.1\| uncharacterized protein LOC778198 [Solanum lycopersicum] gi\|13620218\|emb\|CAC36396.1\| hypothetical protein [Solanum lycopersicum] gi\|13620225\|emb\|CAC36400.1\| hypothetical protein [Solanum lycopersicum]	Back alignment and taxonomy information

>gi\|222640813\|gb\|EEE68945.1\| hypothetical protein OsJ_27827 [Oryza sativa Japonica Group]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		485
TAIR\|locus:2020477		607	AT1G55590 [Arabidopsis thalian	0.983	0.785	0.578	5.5e-141
TAIR\|locus:2827644		656	AT2G17020 "AT2G17020" [Arabido	0.764	0.565	0.391	2.7e-61
UNIPROTKB\|F1NMM1		345	FBXL14 "Uncharacterized protei	0.655	0.921	0.259	1.1e-15
UNIPROTKB\|Q17R01		400	FBXL14 "F-box/LRR-repeat prote	0.567	0.687	0.279	1.5e-14
MGI\|MGI:2141676		400	Fbxl14 "F-box and leucine-rich	0.567	0.687	0.279	1.5e-14
RGD\|1305523		400	Fbxl14 "F-box and leucine-rich	0.567	0.687	0.279	1.5e-14
UNIPROTKB\|Q8N1E6		418	FBXL14 "F-box/LRR-repeat prote	0.567	0.657	0.279	1.8e-14
TAIR\|locus:2166978		405	AT5G23340 [Arabidopsis thalian	0.377	0.451	0.312	2.1e-14
ZFIN\|ZDB-GENE-030131-5920		411	fbxl14a "F-box and leucine-ric	0.641	0.756	0.253	3e-13
ZFIN\|ZDB-GENE-030131-3556		400	fbxl14b "F-box and leucine-ric	0.637	0.772	0.25	3.6e-13

TAIR\|locus:2020477 AT1G55590 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1379 (490.5 bits), Expect = 5.5e-141, P = 5.5e-141
 Identities = 279/482 (57%), Positives = 347/482 (71%)

Query:     2 LELADKESPHLFENNLAIMLTSCLQLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKSLK 61
             LE+AD +SP +F++NL  ML  C  LESL L IRG  + VDA AFQS+ F LP T+K+L+
Sbjct:   123 LEMADLDSPDVFQSNLTQMLNGCPYLESLQLNIRG--ILVDATAFQSVRFSLPETLKALR 180

Query:    62 LQPVLERDAFFLIRRIGRNLMETVQPPILTS--SYYSSFNLRSLSLVLDVITDELLITIT 119
             LQP+LE +A  L+ R         QP   ++  S   SF L+SLSLVLD+I+D L+I IT
Sbjct:   181 LQPLLESEAILLMNRFKVTGTYLSQPDYNSALLSPSPSFTLQSLSLVLDLISDRLIIAIT 240

Query:   120 ASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVND 179
              SLP LV+LDLEDRP  EP    DLT +GLQ+LG C  LT LSL R  +N + +FKR+ND
Sbjct:   241 GSLPQLVKLDLEDRPEKEPFPDNDLTYTGLQALGFCQQLTSLSLVRTCYNRKISFKRIND 300

Query:   180 MGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTG 239
             MG+FLLSE CKGLESVRLGGF KVSDAGFA++L SC +LKKFEVR A  LSDLAFHD+TG
Sbjct:   301 MGIFLLSEACKGLESVRLGGFPKVSDAGFASLLHSCRNLKKFEVRGAFLLSDLAFHDVTG 360

Query:   240 VPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNL 299
               C+L EVRL  C LITSE VKKL    NLEVLDLG CKSI+D+CL S+S LRKLT+LNL
Sbjct:   361 SSCSLQEVRLSTCPLITSEAVKKLGLCGNLEVLDLGSCKSISDSCLNSVSALRKLTSLNL 420

Query:   300 TGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPG 359
              GAD+TDSG+  L + ++PI  L LRGC+RV+D+GIS+LL   GTIS++L+TLDLG+MPG
Sbjct:   421 AGADVTDSGMLALGKSDVPITQLSLRGCRRVSDRGISYLLNNEGTISKTLSTLDLGHMPG 480

Query:   360 ISXXXXXXXXXXXXXXXXXCVRSCFYVTDASVEALARKQPDQEK-SKQLRRLDLCNCIGL 418
             IS                  +RSCF+VTD+S+E+LA  +   E  SKQLR+L++ NC+ L
Sbjct:   481 ISDRAIHTITHCCKALTELSIRSCFHVTDSSIESLATWERQAEGGSKQLRKLNVHNCVSL 540

Query:   419 SVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLTFCLDGCEIGCHDGWQ 478
             +  +LRW+ +PSF GLHWLG+GQTR A +   V   I  +RPWLT C DGCE+GC DGW+
Sbjct:   541 TTGALRWLSKPSFAGLHWLGMGQTRFAGRKETVTAMICGQRPWLTLCFDGCELGCSDGWE 600

Query:   479 FH 480
             FH
Sbjct:   601 FH 602

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

TAIR\|locus:2827644 AT2G17020 "AT2G17020" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NMM1 FBXL14 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|Q17R01 FBXL14 "F-box/LRR-repeat protein 14" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

MGI\|MGI:2141676 Fbxl14 "F-box and leucine-rich repeat protein 14" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

RGD\|1305523 Fbxl14 "F-box and leucine-rich repeat protein 14" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8N1E6 FBXL14 "F-box/LRR-repeat protein 14" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

TAIR\|locus:2166978 AT5G23340 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-030131-5920 fbxl14a "F-box and leucine-rich repeat protein 14a" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-030131-3556 fbxl14b "F-box and leucine-rich repeat protein 14b" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZWC6	ATB_ARATH	No assigned EC number	0.5892	0.9835	0.7858	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.01400003	hypothetical protein (588 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		485
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	5e-13
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	1e-08
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	1e-05

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

 Score = 68.1 bits (167), Expect = 5e-13
 Identities = 55/163 (33%), Positives = 69/163 (42%), Gaps = 19/163 (11%)

Query: 267 RNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTG-ADITDSGLSILAQG--NLPIMNLC 323
             LE L+L  C    D  L  +S   KL  L L G   I D GL  LAQ   NL +  L 
Sbjct: 28  SGLEWLELYMCPIS-DPPLDQLSNCNKLKKLILPGSKLIDDEGLIALAQSCPNLQV--LD 84

Query: 324 LRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPG---ISDDGILTIAAAGIGIIDLCV 380
           LR C+ +TD GI  L     T    L T++LG       I+D  +  +      +  +  
Sbjct: 85  LRACENITDSGIVAL----ATNCPKLQTINLGRHRNGHLITDVSLSALGKNCTFLQTVGF 140

Query: 381 RSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSL 423
             C  VTD  V  LA        SK L RL L NC  L+  S+
Sbjct: 141 AGCD-VTDKGVWELASG-----CSKSLERLSLNNCRNLTDQSI 177

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		485
KOG4341		483	consensus F-box protein containing LRR [General fu	99.96
KOG4341		483	consensus F-box protein containing LRR [General fu	99.94
PLN00113		968	leucine-rich repeat receptor-like protein kinase;	99.86
PLN00113		968	leucine-rich repeat receptor-like protein kinase;	99.85
KOG4194		873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.81
KOG4194		873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.78
cd00116		319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.75
cd00116		319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.73
KOG2120		419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.72
KOG2120		419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.64
PLN03210		1153	Resistant to P. syringae 6; Provisional	99.63
KOG1947		482	consensus Leucine rich repeat proteins, some prote	99.52
KOG1947		482	consensus Leucine rich repeat proteins, some prote	99.46
KOG1909		382	consensus Ran GTPase-activating protein [RNA proce	99.44
KOG1909		382	consensus Ran GTPase-activating protein [RNA proce	99.44
PLN03210		1153	Resistant to P. syringae 6; Provisional	99.42
KOG0444		1255	consensus Cytoskeletal regulator Flightless-I (con	99.37
KOG0444		1255	consensus Cytoskeletal regulator Flightless-I (con	99.26
KOG3207		505	consensus Beta-tubulin folding cofactor E [Posttra	99.16
KOG0618		1081	consensus Serine/threonine phosphatase 2C containi	99.15
KOG0618		1081	consensus Serine/threonine phosphatase 2C containi	99.12
KOG3207		505	consensus Beta-tubulin folding cofactor E [Posttra	99.03
PRK15387		788	E3 ubiquitin-protein ligase SspH2; Provisional	98.93
PRK15387		788	E3 ubiquitin-protein ligase SspH2; Provisional	98.86
KOG4237		498	consensus Extracellular matrix protein slit, conta	98.83
KOG3665		699	consensus ZYG-1-like serine/threonine protein kina	98.72
KOG3665		699	consensus ZYG-1-like serine/threonine protein kina	98.67
COG5238		388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.67
KOG0472		565	consensus Leucine-rich repeat protein [Function un	98.6
KOG2982		418	consensus Uncharacterized conserved protein [Funct	98.6
KOG0472		565	consensus Leucine-rich repeat protein [Function un	98.48
KOG4237		498	consensus Extracellular matrix protein slit, conta	98.47
KOG1259		490	consensus Nischarin, modulator of integrin alpha5	98.38
KOG3864		221	consensus Uncharacterized conserved protein [Funct	98.38
KOG3864		221	consensus Uncharacterized conserved protein [Funct	98.33
COG5238		388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.32
PRK15370		754	E3 ubiquitin-protein ligase SlrP; Provisional	98.3
KOG2982		418	consensus Uncharacterized conserved protein [Funct	98.27
PF14580		175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.22
PRK15370		754	E3 ubiquitin-protein ligase SlrP; Provisional	98.17
PF14580		175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.16
KOG1259		490	consensus Nischarin, modulator of integrin alpha5	98.08
KOG4658		889	consensus Apoptotic ATPase [Signal transduction me	97.9
KOG4308		478	consensus LRR-containing protein [Function unknown	97.81
KOG4658		889	consensus Apoptotic ATPase [Signal transduction me	97.65
KOG1859		1096	consensus Leucine-rich repeat proteins [General fu	97.53
PF13855		61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.44
KOG4308		478	consensus LRR-containing protein [Function unknown	97.39
PF13855		61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.29
KOG0617		264	consensus Ras suppressor protein (contains leucine	97.08
KOG1859		1096	consensus Leucine-rich repeat proteins [General fu	97.03
smart00367		26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	96.82
smart00367		26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	96.67
PLN03150		623	hypothetical protein; Provisional	96.56
PLN03150		623	hypothetical protein; Provisional	96.51
KOG0617		264	consensus Ras suppressor protein (contains leucine	96.5
KOG2739		260	consensus Leucine-rich acidic nuclear protein [Cel	96.3
PRK15386		426	type III secretion protein GogB; Provisional	96.16
KOG2123		388	consensus Uncharacterized conserved protein [Funct	95.96
KOG2739		260	consensus Leucine-rich acidic nuclear protein [Cel	95.65
PF12799		44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	95.53
KOG2123		388	consensus Uncharacterized conserved protein [Funct	95.46
COG4886		394	Leucine-rich repeat (LRR) protein [Function unknow	95.45
KOG1644		233	consensus U2-associated snRNP A' protein [RNA proc	95.29
PF12799		44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	95.03
PRK15386		426	type III secretion protein GogB; Provisional	94.63
KOG1644		233	consensus U2-associated snRNP A' protein [RNA proc	94.54
PF13516		24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	93.53
COG4886		394	Leucine-rich repeat (LRR) protein [Function unknow	93.47
PF13516		24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	92.87
KOG0531		414	consensus Protein phosphatase 1, regulatory subuni	92.54
KOG0531		414	consensus Protein phosphatase 1, regulatory subuni	92.29
KOG3763		585	consensus mRNA export factor TAP/MEX67 [RNA proces	89.67
smart00368		28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	88.49
KOG4579		177	consensus Leucine-rich repeat (LRR) protein associ	88.47
KOG4579		177	consensus Leucine-rich repeat (LRR) protein associ	87.29
smart00368		28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	86.1
PF13504		17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	81.7
KOG3763		585	consensus mRNA export factor TAP/MEX67 [RNA proces	80.94

>KOG4341 consensus F-box protein containing LRR [General function prediction only]	Back alignment and domain information

Probab=99.96  E-value=1.3e-30  Score=232.97  Aligned_cols=364  Identities=23%  Similarity=0.334  Sum_probs=309.3

Q ss_pred             cccccceeccccCccccchhHHHhh-hhccc---cccCCCCcccccc-------------ccC-CCccEEEec-ccCCCh
Q 011445           52 FLPSTIKSLKLQPVLERDAFFLIRR-IGRNL---METVQPPILTSSY-------------YSS-FNLRSLSLV-LDVITD  112 (485)
Q Consensus        52 ~~~~~l~~l~l~~~~~~~~~~l~~~-~~~~~---~~~~~~~~~~~~~-------------~~~-~~L~~L~L~-~~~~~~  112 (485)
                      .+|+++....++++..+.+-....+ +.|+.   ++.-|..+|...+             ..+ -.|+.|.+. +..+.+
T Consensus        74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG~r~v~~  153 (483)
T KOG4341|consen   74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRGCRAVGD  153 (483)
T ss_pred             cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCCcceehHhhhhccccccccccccccCCc
Confidence            4788898889999888887777766 66763   2333554433222             112 368889998 456778


Q ss_pred             HHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhc-CCCCCcceEEeCCccccCCCccCccCcHhHHHHhhcCCC
Q 011445          113 ELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSL-GSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKG  191 (485)
Q Consensus       113 ~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~  191 (485)
                      ..+..+...||++++|.+.+|        ..+++.....+ ..|+.|++|++..|.        .+++..++.++..|++
T Consensus       154 sslrt~~~~CpnIehL~l~gc--------~~iTd~s~~sla~~C~~l~~l~L~~c~--------~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  154 SSLRTFASNCPNIEHLALYGC--------KKITDSSLLSLARYCRKLRHLNLHSCS--------SITDVSLKYLAEGCRK  217 (483)
T ss_pred             chhhHHhhhCCchhhhhhhcc--------eeccHHHHHHHHHhcchhhhhhhcccc--------hhHHHHHHHHHHhhhh
Confidence            888888889999999999999        77888887777 489999999998775        4788889999999999


Q ss_pred             ccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCCCCCHHHHHHhh-CCCCCC
Q 011445          192 LESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLA-SSRNLE  270 (485)
Q Consensus       192 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~  270 (485)
                      |+.|++++|+.+...++..+..++..++.+...||.......+..+..+++.+.++++..|..+++.++..+. .+..|+
T Consensus       218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq  297 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ  297 (483)
T ss_pred             HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence            9999999999999999999999999999998889988888999888899999999999999989998877666 578999


Q ss_pred             EEEccCCCCCcHHHhhccc-CCCCCCEEEcCCC-CCChHHHHHHHhcCCCccEEEccCCCCCChhhHHhHhhhcCCCCCC
Q 011445          271 VLDLGGCKSIADTCLRSIS-CLRKLTALNLTGA-DITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQS  348 (485)
Q Consensus       271 ~L~l~~~~~~~~~~l~~l~-~~~~L~~L~l~~~-~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~  348 (485)
                      .|+.++|..+++..+..++ ++++|+.|.+..| ++++.++..+.++|+.|+.+++.+|..+.+..+..++    ..++.
T Consensus       298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls----~~C~~  373 (483)
T KOG4341|consen  298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLS----RNCPR  373 (483)
T ss_pred             hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhc----cCCch
Confidence            9999999999998888875 7899999999998 7999999999999999999999999977777788887    78999


Q ss_pred             ccEEecCCCCCCCHHHHHHHHh---hCCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccCCCCCCHHHHHh
Q 011445          349 LTTLDLGYMPGISDDGILTIAA---AGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRW  425 (485)
Q Consensus       349 L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~  425 (485)
                      |+++.+++|..++|+++..+..   ....|+.+++.+|+.+++..++.+..       |++|+.+++.+|.+++..++..
T Consensus       374 lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~-------c~~Leri~l~~~q~vtk~~i~~  446 (483)
T KOG4341|consen  374 LRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSI-------CRNLERIELIDCQDVTKEAISR  446 (483)
T ss_pred             hccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhh-------CcccceeeeechhhhhhhhhHH
Confidence            9999999999999998887753   35789999999999999999988887       9999999999999999999999


Q ss_pred             hcCCCCCCceEEeeccee
Q 011445          426 VKRPSFRGLHWLGIGQTR  443 (485)
Q Consensus       426 l~~~~~~~L~~L~l~~~~  443 (485)
                      +. ..+|+++...+..-.
T Consensus       447 ~~-~~lp~i~v~a~~a~~  463 (483)
T KOG4341|consen  447 FA-THLPNIKVHAYFAPV  463 (483)
T ss_pred             HH-hhCccceehhhccCC
Confidence            96 789999888775533

>KOG4341 consensus F-box protein containing LRR [General function prediction only]	Back alignment and domain information

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional	Back alignment and domain information

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional	Back alignment and domain information

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]	Back alignment and domain information

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]	Back alignment and domain information

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily	Back alignment and domain information

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily	Back alignment and domain information

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PLN03210 Resistant to P	Back alignment and domain information

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]	Back alignment and domain information

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]	Back alignment and domain information

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]	Back alignment and domain information

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]	Back alignment and domain information

>PLN03210 Resistant to P	Back alignment and domain information

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]	Back alignment and domain information

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]	Back alignment and domain information

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]	Back alignment and domain information

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]	Back alignment and domain information

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional	Back alignment and domain information

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional	Back alignment and domain information

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]	Back alignment and domain information

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]	Back alignment and domain information

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]	Back alignment and domain information

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]	Back alignment and domain information

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]	Back alignment and domain information

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]	Back alignment and domain information

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]	Back alignment and domain information

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]	Back alignment and domain information

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional	Back alignment and domain information

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A	Back alignment and domain information

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional	Back alignment and domain information

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A	Back alignment and domain information

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]	Back alignment and domain information

>KOG4308 consensus LRR-containing protein [Function unknown]	Back alignment and domain information

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]	Back alignment and domain information

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]	Back alignment and domain information

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A	Back alignment and domain information

>KOG4308 consensus LRR-containing protein [Function unknown]	Back alignment and domain information

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A	Back alignment and domain information

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]	Back alignment and domain information

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]	Back alignment and domain information

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily	Back alignment and domain information

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily	Back alignment and domain information

>PLN03150 hypothetical protein; Provisional	Back alignment and domain information

>PLN03150 hypothetical protein; Provisional	Back alignment and domain information

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]	Back alignment and domain information

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>PRK15386 type III secretion protein GogB; Provisional	Back alignment and domain information

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B	Back alignment and domain information

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]	Back alignment and domain information

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]	Back alignment and domain information

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B	Back alignment and domain information

>PRK15386 type III secretion protein GogB; Provisional	Back alignment and domain information

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]	Back alignment and domain information

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A	Back alignment and domain information

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]	Back alignment and domain information

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A	Back alignment and domain information

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]	Back alignment and domain information

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type	Back alignment and domain information

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]	Back alignment and domain information

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]	Back alignment and domain information

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type	Back alignment and domain information

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D	Back alignment and domain information

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		485
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	4e-29
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	4e-24
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	6e-21
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	6e-14
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	4e-06
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	2e-27
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	1e-24
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	3e-22
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	8e-17
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	3e-13
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	2e-05
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	2e-27
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	6e-27
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	1e-26
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	7e-15
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	9e-14
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-10
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	9e-06
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-13
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-12
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-09
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-09
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-07
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-05
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	7e-13
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	1e-12
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	4e-09
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	6e-09
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	4e-07
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-06
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-10
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-06
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	8e-05
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	1e-09
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	9e-08
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	2e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	6e-07
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	7e-05
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	4e-04
1pgv_A		197	TMD-1, tropomodulin TMD-1; structural genomics, PS	1e-05
1io0_A		185	Tropomodulin; LRR protein, right-handed super-heli	1e-04
1io0_A		185	Tropomodulin; LRR protein, right-handed super-heli	3e-04

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

 Score =  116 bits (291), Expect = 4e-29
 Identities = 42/249 (16%), Positives = 85/249 (34%), Gaps = 21/249 (8%)

Query: 92  SSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQS 151
           + ++S F ++ + L   VI    L  I +    L  L LE          L L+   + +
Sbjct: 87  AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG---------LRLSDPIVNT 137

Query: 152 LGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAI 211
           L    +L  L+L+ C           ++  +  L   C  L+ + L      ++      
Sbjct: 138 LAKNSNLVRLNLSGCSG--------FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA 189

Query: 212 LLS-CHSLKKFEVRS-ASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNL 269
           +     ++ +  +      L       L      LV + L    ++ ++  ++      L
Sbjct: 190 VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL 249

Query: 270 EVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKR 329
           + L L  C  I    L  +  +  L  L + G  + D  L +L +  LP + +       
Sbjct: 250 QHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEA-LPHLQINCSHFTT 307

Query: 330 VTDKGISHL 338
           +    I + 
Sbjct: 308 IARPTIGNK 316

PyMOL of 2ast

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197	Back alignment and structure

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197	Back alignment and structure

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185	Back alignment and structure

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		485
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	99.97
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	99.97
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	99.96
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	99.96
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.95
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	99.89
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	99.89
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	99.87
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.86
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	99.86
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	99.86
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	99.85
1o6v_A		466	Internalin A; bacterial infection, extracellular r	99.85
3v47_A		455	TOLL-like receptor 5B and variable lymphocyte REC	99.85
1o6v_A		466	Internalin A; bacterial infection, extracellular r	99.85
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	99.84
2z81_A		549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.83
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	99.83
3v47_A		455	TOLL-like receptor 5B and variable lymphocyte REC	99.83
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	99.82
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.82
2z7x_B		520	TOLL-like receptor 1, variable lymphocyte recepto;	99.82
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.82
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	99.81
2z81_A		549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.81
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	99.81
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.8
2id5_A		477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.8
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	99.8
3a79_B		562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.8
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	99.79
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	99.78
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	99.78
2z7x_B		520	TOLL-like receptor 1, variable lymphocyte recepto;	99.77
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	99.77
2id5_A		477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.76
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	99.76
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	99.76
3o6n_A		390	APL1; leucine-rich repeat, protein binding; HET: N	99.76
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	99.73
3a79_B		562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.73
3o6n_A		390	APL1; leucine-rich repeat, protein binding; HET: N	99.73
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	99.72
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.72
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	99.71
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.69
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	99.68
1xku_A		330	Decorin; proteoglycan, leucine-rich repeat, struct	99.68
4g8a_A		635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.67
2z80_A		353	TOLL-like receptor 2, variable lymphocyte recepto;	99.66
1xku_A		330	Decorin; proteoglycan, leucine-rich repeat, struct	99.63
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	99.62
2ft3_A		332	Biglycan; proteoglycan, dimer interface, structura	99.62
4g8a_A		635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.6
2ft3_A		332	Biglycan; proteoglycan, dimer interface, structura	99.58
2z80_A		353	TOLL-like receptor 2, variable lymphocyte recepto;	99.58
3zyj_A		440	Leucine-rich repeat-containing protein 4C; cell ad	99.56
3zyi_A		452	Leucine-rich repeat-containing protein 4; cell adh	99.56
1ogq_A		313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.55
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.54
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	99.53
2z66_A		306	Variable lymphocyte receptor B, TOLL-like recepto;	99.52
1ozn_A		285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.51
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	99.51
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	99.5
3zyi_A		452	Leucine-rich repeat-containing protein 4; cell adh	99.49
3zyj_A		440	Leucine-rich repeat-containing protein 4C; cell ad	99.49
2z66_A		306	Variable lymphocyte receptor B, TOLL-like recepto;	99.48
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	99.47
1ozn_A		285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.47
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.46
1wwl_A		312	Monocyte differentiation antigen CD14; LPS, immune	99.46
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.45
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	99.43
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.42
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	99.41
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	99.4
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	99.39
1wwl_A		312	Monocyte differentiation antigen CD14; LPS, immune	99.39
1ogq_A		313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.38
1h6u_A		308	Internalin H; cell adhesion, leucine rich repeat,	99.37
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	99.36
1h6u_A		308	Internalin H; cell adhesion, leucine rich repeat,	99.33
4glp_A		310	Monocyte differentiation antigen CD14; alpha beta	99.31
4glp_A		310	Monocyte differentiation antigen CD14; alpha beta	99.29
2o6q_A		270	Variable lymphocyte receptor A; leucine-rich repea	99.28
2z62_A		276	TOLL-like receptor 4, variable lymphocyte recepto;	99.28
2z62_A		276	TOLL-like receptor 4, variable lymphocyte recepto;	99.26
3rfs_A		272	Internalin B, repeat modules, variable lymphocyte	99.26
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	99.24
3rfs_A		272	Internalin B, repeat modules, variable lymphocyte	99.19
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	99.19
1p9a_G		290	Platelet glycoprotein IB alpha chain precursor; pl	99.15
1h6t_A		291	Internalin B; cell adhesion, leucine rich repeat,	99.14
2o6q_A		270	Variable lymphocyte receptor A; leucine-rich repea	99.13
2xwt_C		239	Thyrotropin receptor; signaling protein-immune sys	99.12
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.07
1h6t_A		291	Internalin B; cell adhesion, leucine rich repeat,	99.07
2xwt_C		239	Thyrotropin receptor; signaling protein-immune sys	99.05
1p9a_G		290	Platelet glycoprotein IB alpha chain precursor; pl	99.05
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	99.05
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.04
1io0_A		185	Tropomodulin; LRR protein, right-handed super-heli	99.04
3m19_A		251	Variable lymphocyte receptor A diversity region; a	99.03
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	98.98
1io0_A		185	Tropomodulin; LRR protein, right-handed super-heli	98.96
3m19_A		251	Variable lymphocyte receptor A diversity region; a	98.95
1xeu_A		263	Internalin C; cellular invasion, leucine-rich repe	98.88
2je0_A		149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.85
3sb4_A		329	Hypothetical leucine rich repeat protein; LRR, rig	98.81
2je0_A		149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.81
2ell_A		168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.8
4ay9_X		350	Follicle-stimulating hormone receptor; hormone-rec	98.79
1xeu_A		263	Internalin C; cellular invasion, leucine-rich repe	98.77
2o6s_A		208	Variable lymphocyte receptor B; leucine-rich repea	98.73
1dce_A		567	Protein (RAB geranylgeranyltransferase alpha subun	98.72
3sb4_A		329	Hypothetical leucine rich repeat protein; LRR, rig	98.71
2ell_A		168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.68
2xot_A		361	Amphoterin-induced protein 1; cell adhesion, neuro	98.64
2xot_A		361	Amphoterin-induced protein 1; cell adhesion, neuro	98.6
3e6j_A		229	Variable lymphocyte receptor diversity region; var	98.6
2v9t_B		220	SLIT homolog 2 protein N-product; structural prote	98.59
2v70_A		220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.59
2v9t_B		220	SLIT homolog 2 protein N-product; structural prote	98.57
1pgv_A		197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.56
2o6s_A		208	Variable lymphocyte receptor B; leucine-rich repea	98.54
3e6j_A		229	Variable lymphocyte receptor diversity region; var	98.49
2v70_A		220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.48
1a9n_A		176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.47
4ay9_X		350	Follicle-stimulating hormone receptor; hormone-rec	98.47
3cvr_A		571	Invasion plasmid antigen; leucine rich repeat and	98.46
1a9n_A		176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.44
3cvr_A		571	Invasion plasmid antigen; leucine rich repeat and	98.41
1dce_A		567	Protein (RAB geranylgeranyltransferase alpha subun	98.4
1pgv_A		197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.37
4fs7_A		394	Uncharacterized protein; leucine-rich repeats, pro	98.25
4fdw_A		401	Leucine rich hypothetical protein; putative cell s	98.22
1w8a_A		192	SLIT protein; signaling protein, secreted protein,	98.17
1ds9_A		198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.17
1ds9_A		198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.12
2wfh_A		193	SLIT homolog 2 protein C-product; developmental pr	98.1
4fdw_A		401	Leucine rich hypothetical protein; putative cell s	98.05
4fs7_A		394	Uncharacterized protein; leucine-rich repeats, pro	98.02
2wfh_A		193	SLIT homolog 2 protein C-product; developmental pr	98.01
2o6r_A		177	Variable lymphocyte receptor B; leucine-rich repea	97.99
2o6r_A		177	Variable lymphocyte receptor B; leucine-rich repea	97.98
1w8a_A		192	SLIT protein; signaling protein, secreted protein,	97.95
4gt6_A		394	Cell surface protein; leucine rich repeats, putati	97.77
3g39_A		170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.75
2r9u_A		174	Variable lymphocyte receptor; adaptive immunity, V	97.67
4gt6_A		394	Cell surface protein; leucine rich repeats, putati	97.58
4b8c_D		727	Glucose-repressible alcohol dehydrogenase transcr	97.42
4b8c_D		727	Glucose-repressible alcohol dehydrogenase transcr	97.36
3g39_A		170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.3
2r9u_A		174	Variable lymphocyte receptor; adaptive immunity, V	97.26
3rw6_A		267	Nuclear RNA export factor 1; retroviral constituti	96.99
3rw6_A		267	Nuclear RNA export factor 1; retroviral constituti	96.7
2ifg_A		347	High affinity nerve growth factor receptor; TRK, T	96.63
2ifg_A		347	High affinity nerve growth factor receptor; TRK, T	96.42
4h09_A		379	Hypothetical leucine rich repeat protein; two LRR_	89.96
4h09_A		379	Hypothetical leucine rich repeat protein; two LRR_	86.65

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*	Back alignment and structure

Probab=99.97  E-value=8.5e-29  Score=253.02  Aligned_cols=406  Identities=17%  Similarity=0.142  Sum_probs=287.5

Q ss_pred             hhhHHHHhhccccceeeeeecCCCcccccccchhhhhcccccceeccccCccccc---hhHHHhh----hhccccccCCC
Q 011445           15 NNLAIMLTSCLQLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKSLKLQPVLERD---AFFLIRR----IGRNLMETVQP   87 (485)
Q Consensus        15 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~---~~~l~~~----~~~~~~~~~~~   87 (485)
                      ..+.++...|++|++|+++++.+    .+..+..+....+ .++.++++......   +..+...    +.+.+.++...
T Consensus        95 ~~l~~l~~~~~~L~~L~L~~~~~----~~~~~~~l~~~~~-~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~  169 (594)
T 2p1m_B           95 PWIEAMSSSYTWLEEIRLKRMVV----TDDCLELIAKSFK-NFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVD  169 (594)
T ss_dssp             HHHHHHHHHCTTCCEEEEESCBC----CHHHHHHHHHHCT-TCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEE
T ss_pred             HHHHHHHHhCCCCCeEEeeCcEE----cHHHHHHHHHhCC-CCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccC
Confidence            34667778899999999997642    2223333332333 58888887653221   3333211    33333332211


Q ss_pred             Ccc----ccccccCCCccEEEecccC--CChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceE
Q 011445           88 PIL----TSSYYSSFNLRSLSLVLDV--ITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGL  161 (485)
Q Consensus        88 ~~~----~~~~~~~~~L~~L~L~~~~--~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L  161 (485)
                      ...    ......+++|++|+++.+.  +....+..+...+++|++|++++|        ..+.. ....+..+++|+.|
T Consensus       170 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~--------~~~~~-l~~~~~~~~~L~~L  240 (594)
T 2p1m_B          170 DVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA--------VPLEK-LATLLQRAPQLEEL  240 (594)
T ss_dssp             CCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT--------SCHHH-HHHHHHHCTTCSEE
T ss_pred             CcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC--------CcHHH-HHHHHhcCCcceEc
Confidence            100    1112356788888888654  666777777667888888888886        23332 22334577888888


Q ss_pred             EeCCccccCCCccCccCcHh---HHHHhhcCCCccEE-EeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHH
Q 011445          162 SLTRCRHNHQGTFKRVNDMG---MFLLSEGCKGLESV-RLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDL  237 (485)
Q Consensus       162 ~l~~~~~~~~~~~~~~~~~~---l~~l~~~~~~L~~L-~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  237 (485)
                      +++.+..       .+....   +......|++|+.| .+.   ......+..+...+++|+.|++++|. +++..+..+
T Consensus       241 ~l~~~~~-------~~~~~~~~~l~~~l~~~~~L~~Ls~~~---~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~  309 (594)
T 2p1m_B          241 GTGGYTA-------EVRPDVYSGLSVALSGCKELRCLSGFW---DAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKL  309 (594)
T ss_dssp             ECSBCCC-------CCCHHHHHHHHHHHHTCTTCCEEECCB---TCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHH
T ss_pred             ccccccC-------ccchhhHHHHHHHHhcCCCcccccCCc---ccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHH
Confidence            8766531       122222   22223567888887 333   33444555556677999999999997 888888888


Q ss_pred             HcCCCCccEEEcccCCCCCHHHHHHhh-CCCCCCEEEc--------cCCCCCcHHHhhccc-CCCCCCEEEcCCCCCChH
Q 011445          238 TGVPCALVEVRLLWCRLITSETVKKLA-SSRNLEVLDL--------GGCKSIADTCLRSIS-CLRKLTALNLTGADITDS  307 (485)
Q Consensus       238 ~~~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l--------~~~~~~~~~~l~~l~-~~~~L~~L~l~~~~l~~~  307 (485)
                      ...+++|++|++.+|  +++.++..+. .+++|++|++        ..+..+++.++..+. .+++|++|.+..+.+++.
T Consensus       310 ~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~  387 (594)
T 2p1m_B          310 LCQCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNA  387 (594)
T ss_dssp             HTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHH
T ss_pred             HhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHH
Confidence            888999999999987  5666666665 4899999999        345677877777665 489999998877899998


Q ss_pred             HHHHHHhcCCCccEEEcc-----CCCCCC----hhhHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEE
Q 011445          308 GLSILAQGNLPIMNLCLR-----GCKRVT----DKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDL  378 (485)
Q Consensus       308 ~~~~l~~~~~~L~~L~l~-----~~~~l~----~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L  378 (485)
                      ++..+...+++|+.|+++     +|..++    +.++..+.    ..+++|+.|++++  .+++.++..+...+++|+.|
T Consensus       388 ~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~----~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L  461 (594)
T 2p1m_B          388 ALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIV----EHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEML  461 (594)
T ss_dssp             HHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHH----HHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEE
T ss_pred             HHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHH----hhCCCccEEeecC--cccHHHHHHHHHhchhccEe
Confidence            888888778999999998     566777    66777766    5688999999976  78999998888778999999


Q ss_pred             EecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccCCCCCCHHHHHhhcCCCCCCceEEeecceeccCCCchhHHHHhhh
Q 011445          379 CVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNE  458 (485)
Q Consensus       379 ~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  458 (485)
                      ++++|. +++.++..+..      ++++|++|++++|+ +++.++..+. ..+++|+.|++++|++.   .+.+..+...
T Consensus       462 ~L~~~~-i~~~~~~~l~~------~~~~L~~L~L~~n~-~~~~~~~~~~-~~l~~L~~L~l~~~~~~---~~~~~~l~~~  529 (594)
T 2p1m_B          462 SVAFAG-DSDLGMHHVLS------GCDSLRKLEIRDCP-FGDKALLANA-SKLETMRSLWMSSCSVS---FGACKLLGQK  529 (594)
T ss_dssp             EEESCC-SSHHHHHHHHH------HCTTCCEEEEESCS-CCHHHHHHTG-GGGGGSSEEEEESSCCB---HHHHHHHHHH
T ss_pred             eccCCC-CcHHHHHHHHh------cCCCcCEEECcCCC-CcHHHHHHHH-HhCCCCCEEeeeCCCCC---HHHHHHHHHh
Confidence            999886 89998888866      69999999999984 5888887664 46889999999999874   5667777788


Q ss_pred             CCCceEe
Q 011445          459 RPWLTFC  465 (485)
Q Consensus       459 ~~~l~~~  465 (485)
                      .|.+++.
T Consensus       530 lp~l~i~  536 (594)
T 2p1m_B          530 MPKLNVE  536 (594)
T ss_dssp             CTTEEEE
T ss_pred             CCCCEEE
Confidence            8988753

PyMOL of 2p1m

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A	Back alignment and structure

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*	Back alignment and structure

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A	Back alignment and structure

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*	Back alignment and structure

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*	Back alignment and structure

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A	Back alignment and structure

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}	Back alignment and structure

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}	Back alignment and structure

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}	Back alignment and structure

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}	Back alignment and structure

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}	Back alignment and structure

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}	Back alignment and structure

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*	Back alignment and structure

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*	Back alignment and structure

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}	Back alignment and structure

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A	Back alignment and structure

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}	Back alignment and structure

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*	Back alignment and structure

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}	Back alignment and structure

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}	Back alignment and structure

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}	Back alignment and structure

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A	Back alignment and structure

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A	Back alignment and structure

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}	Back alignment and structure

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}	Back alignment and structure

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A	Back alignment and structure

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}	Back alignment and structure

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A	Back alignment and structure

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}	Back alignment and structure

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}	Back alignment and structure

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}	Back alignment and structure

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8	Back alignment and structure

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1	Back alignment and structure

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}	Back alignment and structure

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}	Back alignment and structure

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}	Back alignment and structure

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*	Back alignment and structure

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*	Back alignment and structure

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}	Back alignment and structure

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}	Back alignment and structure

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A	Back alignment and structure

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A	Back alignment and structure

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}	Back alignment and structure

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}	Back alignment and structure

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A	Back alignment and structure

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*	Back alignment and structure

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}	Back alignment and structure

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1	Back alignment and structure

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A	Back alignment and structure

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1	Back alignment and structure

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A	Back alignment and structure

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}	Back alignment and structure

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A	Back alignment and structure

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}	Back alignment and structure

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A	Back alignment and structure

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A	Back alignment and structure

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*	Back alignment and structure

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}	Back alignment and structure

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}	Back alignment and structure

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*	Back alignment and structure

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}	Back alignment and structure

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A	Back alignment and structure

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}	Back alignment and structure

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}	Back alignment and structure

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}	Back alignment and structure

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A	Back alignment and structure

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}	Back alignment and structure

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A	Back alignment and structure

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1	Back alignment and structure

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}	Back alignment and structure

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}	Back alignment and structure

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}	Back alignment and structure

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4	Back alignment and structure

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*	Back alignment and structure

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}	Back alignment and structure

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4	Back alignment and structure

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}	Back alignment and structure

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*	Back alignment and structure

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1	Back alignment and structure

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}	Back alignment and structure

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A	Back alignment and structure

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7	Back alignment and structure

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A	Back alignment and structure

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A	Back alignment and structure

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}	Back alignment and structure

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A	Back alignment and structure

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}	Back alignment and structure

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}	Back alignment and structure

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}	Back alignment and structure

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}	Back alignment and structure

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7	Back alignment and structure

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}	Back alignment and structure

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D	Back alignment and structure

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}	Back alignment and structure

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}	Back alignment and structure

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}	Back alignment and structure

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}	Back alignment and structure

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D	Back alignment and structure

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}	Back alignment and structure

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A	Back alignment and structure

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A	Back alignment and structure

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7	Back alignment and structure

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7	Back alignment and structure

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}	Back alignment and structure

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		485
d2astb2		284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-08
d1z7xw1		460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-06

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 4e-08
 Identities = 42/247 (17%), Positives = 75/247 (30%), Gaps = 29/247 (11%)

Query: 73  LIRRIGRNLMETVQPPILTSSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLED 132
           +  R  R+ M+            S F ++ + L   VI    L  I +    L  L LE 
Sbjct: 26  IAFRCPRSFMDQPLAEHF-----SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE- 79

Query: 133 RPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSE----G 188
                    L L+   + +L    +L  L+L+ C    +   + +      L        
Sbjct: 80  --------GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC 131

Query: 189 CKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVR 248
               E       + VS+      L       +                L      LV + 
Sbjct: 132 FDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSD----------LSTLVRRCPNLVHLD 181

Query: 249 LLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSG 308
           L    ++ ++  ++      L+ L L  C  I    L  +  +  L  L + G  + D  
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGT 240

Query: 309 LSILAQG 315
           L +L + 
Sbjct: 241 LQLLKEA 247

PyMOL of d2astb2

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		485
d2astb2		284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.9
d2astb2		284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.9
d1z7xw1		460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.87
d1z7xw1		460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.84
d2ca6a1		344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.68
d2ca6a1		344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.64
d2omza2		384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.56
d2omza2		384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.45
d1xkua_		305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.2
d1xkua_		305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.2
d1ozna_		284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.12
d1h6ua2		227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.1
d1ozna_		284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.08
d1h6ua2		227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.97
d2omxa2		199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.97
d1p9ag_		266	von Willebrand factor binding domain of glycoprote	98.94
d1h6ta2		210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.93
d2omxa2		199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.92
d1h6ta2		210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.9
d1ogqa_		313	Polygalacturonase inhibiting protein PGIP {Kidney	98.9
d1jl5a_		353	Leucine rich effector protein YopM {Yersinia pesti	98.83
d1pgva_		167	Tropomodulin C-terminal domain {nematode (Caenorha	98.83
d1p9ag_		266	von Willebrand factor binding domain of glycoprote	98.82
d1ogqa_		313	Polygalacturonase inhibiting protein PGIP {Kidney	98.76
d1io0a_		166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.71
d1jl5a_		353	Leucine rich effector protein YopM {Yersinia pesti	98.67
d1a9na_		162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.61
d1pgva_		167	Tropomodulin C-terminal domain {nematode (Caenorha	98.6
d1a9na_		162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.55
d1xwdc1		242	Follicle-stimulating hormone receptor {Human (Homo	98.54
d1xwdc1		242	Follicle-stimulating hormone receptor {Human (Homo	98.51
d1io0a_		166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.49
d1dcea3		124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.29
d1dcea3		124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.28
d1m9la_		198	Outer arm dynein light chain 1 {Green algae (Chlam	98.18
d1m9la_		198	Outer arm dynein light chain 1 {Green algae (Chlam	98.17
d1w8aa_		192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.12
d1w8aa_		192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.91
d2ifga3		156	High affinity nerve growth factor receptor, N-term	97.27
d2ifga3		156	High affinity nerve growth factor receptor, N-term	97.17
d1koha1		162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.89
d1koha1		162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.65

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=9.1e-23  Score=185.00  Aligned_cols=207  Identities=18%  Similarity=0.269  Sum_probs=183.9

Q ss_pred             cCCCccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCccccCCCccC
Q 011445           96 SSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFK  175 (485)
Q Consensus        96 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  175 (485)
                      ...+|++|+++++.+.+..+..+...|++|++|++++|         .+++..+..+..+++|++|++++|.        
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~---------~l~~~~~~~l~~~~~L~~L~Ls~c~--------  106 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL---------RLSDPIVNTLAKNSNLVRLNLSGCS--------  106 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC---------BCCHHHHHHHTTCTTCSEEECTTCB--------
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCccccccccc---------CCCcHHHHHHhcCCCCcCccccccc--------
Confidence            35689999999888888888888899999999999995         5788888889999999999998874        


Q ss_pred             ccCcHhHHHHhhcCCCccEEEeCCCCCCCHHHHHHHHH-hCCCCcEEEecCC-CCCCHHHHHHHHcCCCCccEEEcccCC
Q 011445          176 RVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILL-SCHSLKKFEVRSA-SFLSDLAFHDLTGVPCALVEVRLLWCR  253 (485)
Q Consensus       176 ~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~  253 (485)
                      .+++.++..+...|++|++|++++|..+++.++...+. .+++|+.|+++++ ..+++.++..+...+|+|++|++++|.
T Consensus       107 ~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~  186 (284)
T d2astb2         107 GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV  186 (284)
T ss_dssp             SCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT
T ss_pred             cccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccccccccccccccccccccccccccccc
Confidence            47889999888899999999999999999888765444 4589999999987 458889999998899999999999998


Q ss_pred             CCCHHHHHHhhCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCcc
Q 011445          254 LITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIM  320 (485)
Q Consensus       254 ~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~  320 (485)
                      .+++.++..+.++++|++|++++|..+++.++..++++|+|+.|++.++ +++.++..+...+|+|+
T Consensus       187 ~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~  252 (284)
T d2astb2         187 MLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQ  252 (284)
T ss_dssp             TCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSE
T ss_pred             CCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcccc
Confidence            8999898889999999999999999999999888999999999999987 78888888888888876

PyMOL of d2astb2

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}	Back information, alignment and structure

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}	Back information, alignment and structure

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}	Back information, alignment and structure

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}	Back information, alignment and structure

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}	Back information, alignment and structure

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure