Citrus Sinensis ID: 011450

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-----
Protein Sequence
MPVIASPSYVNLKLHLSTSFSFKWNYCSGNNRSHRRGMIRAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLKSPGKWHSVSTNSTEAAQRKSAKVRDWKMHCQGIKSVGSWWNSVKCFLGQRQSQERFASVGVELPAPLWSSKPDSFLMASVVTVFMITSIFNTVGKTDKWTSVRQRNQRRL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccEEEEEEEcccEEEEEEEcccccccccEEEccccccccccEEEEEEEEEEEEcccccccccEEEEcccccccccccccccEEEEEEEccccccEEccccEEEEEEccHHHHcccccEEEcccccEEEEEcccccccccEEEEccccccccccccccccEEEEEEEEccccccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccccEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccEEEccccEccHHHHHcccccccccccccccccccEEEEcccccHHHHHcccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccHHHHHHHHHcccccccccccccccccccccHHHHHHHHcccccccccccccccccEEEEEEEEEEEEccccccccccccccccccccccccEEEEEEEcccccEEEEEEEccccccccEEEcccccccccccEEEEEEEEEEEEccccccccEEEEEccccccccccccccEEEEEEEEccccEEEccccEEEEEEEEHHHHHHccEEEEcccccEEEEEcccccccccEEEEccccccccccccccccEEEEEEEEccccccHHHHHHHHHHHHHccccccccccccccHHHHccHHHccccccccccccccccHHHHHHHHccccccHHHEEEEccccccEEEccccccccHHHHHEHEHHHHHHHHHcccccccEHHHHHcccc
Coil and Loop (DISEMBL)
mpviaspsyvnLKLHLSTsfsfkwnycsgnnrshrrgMIRAAGTDYYSTLNVRQNATLQEIKTSYRKLArkyhpdinkspgaeeKFKEISSAYEvlsddekrsvydrfgeagitgeydglsntsqgvdpfelysaffggsdglfggvgeagginfnfgnkgnfgldircggtgakssnciqsckacwgrggvlktqrtpfglisqvstcskcggdgkiiidhcrrcggngevqskrsmkvvippgvsngatmqirgegnfdRRRSLAGDLFVALHvdekqgihrdgLNLFSKISVDYTEAILGTSMEVetvegmkdlripsgvqpgdtvklqqmgvpdinnpsvrgdhLFIVNVlipkdisdpERALVEEIAFlkspgkwhsvstnsTEAAQRKSAKVRDWKMHCQGIKSVGSWWNSVKCFLGQRQSQERFASvgvelpaplwsskpdsflMASVVTVFMITSIFNTvgktdkwtSVRQRNQRRL
Flexible Loop (DISEMBL)
mpviaspsyvNLKLHLSTSFSFKWNYCSGNNRSHRRGMIRAAGTDYYSTLNVRQNATLQEIKTSYRKLArkyhpdinkspgaeekFKEISSAyevlsddekrsVYDRFGEAGITGEYDGLSNTSQGVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGngevqskrsmkvvippgvsngatmqirgEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFlkspgkwhsvstnsTEAAQRKSAKVRDWKMHCQGIKSVGSWWNSVKCFLGQRQSQERFASVGVELPAPLWSSKPDSFLMASVVTVFMITSIfntvgktdkwtsvrqrnqrrl
Low Complexity Region (SEG)
MPVIASPSYVNLKLHLSTSFSFKWNYCSGNNRSHRRGMIRAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYSAffggsdglfggvgEAgginfnfgnkgnfgLDIRCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLKSPGKWHSVSTNSTEAAQRKSAKVRDWKMHCQGIKSVGSWWNSVKCFLGQRQSQERFASVGVELPAPLWSSKPDSFLMASVVTVFMITSIFNTVGKTDKWTSVRQRNQRRL
Disordered region (IsUnstruct)
*******SYVNLKLHLSTSFSFKWNYCSGNNRSHRRGMIRAAGTDYYSTLNVRQNATLQEIKTSYRKLA**********************************VYDRFGEAGITGEYDGLSNTSQGVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEV*******VVIP**********I***GNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLR****************GVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLKSPGKW*****************VRDWKMHCQGIKSVGSWWNSVKCFLGQRQSQERFASVGVELPAPLWSSKPDSFLMASVVTVFMITSIFNTVGKTDKWT**********
Disordered Region (DISOPRED)
****************************************AAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGIT*********SQGVDPFELYSA**********************GNKGNFGLDIRCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQ**********RSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVE********************************K***********WWNSVKCFLGQ*Q***********************FLMASVVTVFMITSIFNTVGKTDK************
Disordered Region (DISEMBL)
MPVIASPSYVNLKLHLSTSFSFKWNYCSGNNRSHRRGMIRAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLKSP***********************WKMHCQGIKSVGSWWNSVKCFLGQRQSQERFASVGVELPAPLWSSKPDSFLMASVVTVFMITSIFNTVGKTDK************
Disordered Region (DISPRO)
*PVIASPSYVNLKLHLSTSFSFKWNYC*******RRGMIRAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRCGGTG*KSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK************************************GSWWNSVKCFLGQRQSQERFASVGVELPAPLWSSKPDSFLMASVVTVFMITSIFNTVGKTDKWTSV********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPVIASPSYVNLKLHLSTSFSFKWNYCSGNNRSHRRGMIRAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLKSPGKWHSVSTNSTEAAQRKSAKVRDWKMHCQGIKSVGSWWNSVKCFLGQRQSQERFASVGVELPAPLWSSKPDSFLMASVVTVFMITSIFNTVGKTDKWTSVRQRNQRRL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	485	2.2.26 [Sep-21-2011]
Q8DKR7	373	Chaperone protein DnaJ OS	yes	no	0.665	0.865	0.417	2e-72
B8HLD2	374	Chaperone protein DnaJ OS	yes	no	0.682	0.885	0.406	4e-71
B2J3J3	375	Chaperone protein DnaJ OS	yes	no	0.682	0.882	0.406	5e-70
Q8YUA5	376	Chaperone protein DnaJ OS	yes	no	0.665	0.859	0.402	1e-69
Q3MG81	376	Chaperone protein DnaJ OS	yes	no	0.665	0.859	0.402	2e-69
Q114R3	374	Chaperone protein DnaJ OS	yes	no	0.674	0.874	0.397	4e-69
B0JW23	374	Chaperone protein DnaJ OS	yes	no	0.684	0.887	0.405	4e-69
Q7VEJ6	378	Chaperone protein DnaJ OS	yes	no	0.698	0.896	0.410	1e-68
B0CAZ0	374	Chaperone protein DnaJ OS	yes	no	0.684	0.887	0.405	4e-68
B7KEJ8	375	Chaperone protein DnaJ OS	yes	no	0.690	0.893	0.406	4e-68

>sp|Q8DKR7|DNAJ_THEEB Chaperone protein DnaJ OS=Thermosynechococcus elongatus (strain BP-1) GN=dnaJ PE=3 SV=2

 Score =  273 bits (698), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 150/359 (41%), Positives = 207/359 (57%), Gaps = 36/359 (10%)

Query: 45  DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSV 104
           D+Y  L V ++A  +E+K +YR+LARKYHPD+NK PGAEEKFKEI+ AYEVLSD + R+ 
Sbjct: 4   DFYEILGVSRSADAEELKRAYRRLARKYHPDVNKEPGAEEKFKEINRAYEVLSDPQARAN 63

Query: 105 YDRFGEAGITG-EYDGLSNTSQG-VDPF-ELYSAFFGG---------------------- 139
           YDRFGEAG++G    G S+   G +  F +++  FFGG                      
Sbjct: 64  YDRFGEAGVSGVGAAGFSDFGIGDMGGFADIFETFFGGFTTSSRRQQGPTRGEDLRYDLK 123

Query: 140 ---SDGLFGGVGEAGGINFNFGNKGNFGLDIRCGGTGAKSSNCIQSCKACWGRGGVLKTQ 196
               + +FGG  E   I  N     +      C GTGAK      +C  C G G V ++ 
Sbjct: 124 LEFREAVFGGEKE---IRIN-----HLETCKTCQGTGAKPGTRPVTCSTCGGVGQVRRSA 175

Query: 197 RTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRG 256
           RTPFG  +Q++TC  CGG G +I D C  CGG G +Q  + +K+ IP GV NG  +++ G
Sbjct: 176 RTPFGSFTQLTTCPTCGGSGVVIEDRCESCGGQGHIQVSKKLKITIPAGVDNGTRLRVSG 235

Query: 257 EGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKD 316
           EG+   R    GDL+V L V       R+G N+ S+I + Y +AILG  + V TV+G  +
Sbjct: 236 EGDAGLRGGPPGDLYVYLFVQPDPEFQREGNNILSRIKISYLQAILGCRISVSTVDGEAE 295

Query: 317 LRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK 375
           L+IP+G QPG  + L+  GVP + NP  RGDHL  V+V IP  I+  ER L+E++A ++
Sbjct: 296 LKIPAGTQPGTVLVLEGRGVPRVGNPVARGDHLITVDVEIPTHITHEERELLEKLAKIR 354

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.
Thermosynechococcus elongatus (strain BP-1) (taxid: 197221)

>sp|B8HLD2|DNAJ_CYAP4 Chaperone protein DnaJ OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=dnaJ PE=3 SV=1

 Score =  269 bits (687), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 143/352 (40%), Positives = 202/352 (57%), Gaps = 21/352 (5%)

Query: 45  DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSV 104
           DYY  L V ++A  +++K +YR+LARKYHPD+NK  GAEE+FKEI+ AYEVLSD E R+ 
Sbjct: 4   DYYDILGVSRDAGQEDLKQAYRRLARKYHPDVNKEAGAEERFKEINRAYEVLSDPETRAR 63

Query: 105 YDRFGEAGITGEYDGLSNTSQGVDPFELYSAFFGGSDGLFGGV-----GEAGGINFNFGN 159
           YDRFGEAG++G   G  +        +++ + F G  G+  G      G + G +  F  
Sbjct: 64  YDRFGEAGVSGAAAGYGDMGDMGGFADIFESIFSGFGGVGAGTSRRRTGPSRGDDLRFDL 123

Query: 160 KGNFGLDI----------------RCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLI 203
           K  F   I                 C G+GAK     ++C  C G G V +  RTPFG  
Sbjct: 124 KLEFREAIFGGEKQIRITHLETCTTCNGSGAKPGTKPRTCGTCGGAGQVRRATRTPFGSF 183

Query: 204 SQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRR 263
           +QVS C  C G G++I D C  CGGNG+ Q  + +K+ IP GV  G  +++  EG+  ++
Sbjct: 184 TQVSVCPTCNGKGQVIEDKCETCGGNGQAQVTKKLKITIPAGVDTGTRLRVSNEGDAGQQ 243

Query: 264 RSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGV 323
              AGDL+V L V E     R+G+N+ S++ + Y +AILG+ + V TV+G  +L IP G 
Sbjct: 244 GGPAGDLYVYLFVQEDPEFRREGINILSEVKISYLQAILGSRLMVNTVDGEVELTIPPGT 303

Query: 324 QPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK 375
           QP   + L+  GVP + NP  RGDHL  V + IP  IS  ER L+E++A ++
Sbjct: 304 QPNTVLTLENHGVPRLGNPVSRGDHLITVLLEIPTRISAEERELLEKLAKIR 355

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Cyanothece sp. (strain PCC 7425 / ATCC 29141) (taxid: 395961)

>sp|B2J3J3|DNAJ_NOSP7 Chaperone protein DnaJ OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=dnaJ PE=3 SV=1

 Score =  265 bits (678), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 144/354 (40%), Positives = 204/354 (57%), Gaps = 23/354 (6%)

Query: 45  DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSV 104
           DYY  L V ++   +E+K +YR+LARKYHPD+NK PGAE++FKEI+ AYEVLS+ E R+ 
Sbjct: 4   DYYEILGVSRDTDKEELKQAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSEPETRAR 63

Query: 105 YDRFGEAGITGEYDGLSNTSQGVDPFELYSAFFGGSDGLFGG-------VGEAGGINFNF 157
           YDRFG  G++G   G  +        +++ + F G  G  G         G A G +   
Sbjct: 64  YDRFGPEGVSGAGAGFQDVGDMGGFADIFESIFSGFAGGMGSPTQQRRRSGPARGDDLRL 123

Query: 158 GNKGNF-------GLDIR---------CGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFG 201
             K +F         +IR         C G+GAK     ++C  C G G V +  RTPFG
Sbjct: 124 DLKLDFREAVFGGEKEIRISHLENCEVCSGSGAKPGTRPRTCSTCSGSGQVRRVTRTPFG 183

Query: 202 LISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFD 261
             +QVSTC  C G G +I D C  C G G  Q  + +K+ IP GV NG  ++I  EG+  
Sbjct: 184 SFTQVSTCPTCNGTGMVIEDKCDACDGKGANQVTKKLKITIPAGVDNGTRLRISSEGDAG 243

Query: 262 RRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPS 321
           +R   +GDL+V L V+E +   RDG+N+ S+I + Y +AILG  +EV+TV+G  +L IP+
Sbjct: 244 QRGGPSGDLYVYLFVNEDEEFQRDGINILSEIKISYLQAILGCRLEVDTVDGPVELIIPA 303

Query: 322 GVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK 375
           G QP   +KL+  GVP + NP  RGDH+  V + IP  ++  ER L+E++A +K
Sbjct: 304 GTQPNTVMKLENRGVPRLGNPVSRGDHMLNVLIDIPNKVTPEERELLEKLAKIK 357

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Nostoc punctiforme (strain ATCC 29133 / PCC 73102) (taxid: 63737)

>sp|Q8YUA5|DNAJ_NOSS1 Chaperone protein DnaJ OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=dnaJ PE=3 SV=1

 Score =  264 bits (674), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 146/363 (40%), Positives = 200/363 (55%), Gaps = 40/363 (11%)

Query: 45  DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSV 104
           DYY  L V ++A  +EIK +YR+LARKYHPD+NK PGAEE+FKEI+ AYEVLS+ E R+ 
Sbjct: 4   DYYEILGVARDADKEEIKQAYRRLARKYHPDVNKEPGAEERFKEINRAYEVLSEPETRAR 63

Query: 105 YDRFGEAGITGEYDGLSNTSQGVDPFELYSAFF-----------------GGS------- 140
           YDRFG  G++G   G  + S      +++ + F                 GG        
Sbjct: 64  YDRFGPEGVSGAGVGFQDMSDMGGFADIFESIFSGFAGGGMGGPTQQRRRGGPARGDDLR 123

Query: 141 --------DGLFGGVGEAGGINFNFGNKGNFGLDIRCGGTGAKSSNCIQSCKACWGRGGV 192
                   + +FGG  E    +              C G+GAK     ++C  C G G V
Sbjct: 124 LDLKLDFREAVFGGEKEIRISHLETCET--------CSGSGAKPGTRPRTCSTCSGSGQV 175

Query: 193 LKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATM 252
            +  RTPFG  +QVSTC  C G G +I D C  C G G  Q  + +K+ IP GV NG  +
Sbjct: 176 RRVTRTPFGSFTQVSTCPTCNGTGMVIEDKCDTCDGKGTNQVTKKLKITIPAGVDNGTRL 235

Query: 253 QIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVE 312
           +I+ EG+  +R    GDL+V L V+E +   RDG+N+ S+I V Y +AILG  +EV TV+
Sbjct: 236 RIKDEGDAGQRGGPPGDLYVYLFVNEDEEFQRDGINVISEIKVSYLQAILGCRLEVNTVD 295

Query: 313 GMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIA 372
           G  +L IP+G QP   +KL+  GVP + NP  RGDHL  V + IP  +   ER L+E++A
Sbjct: 296 GPVELIIPAGTQPNTVMKLENRGVPRLGNPVSRGDHLLTVLIDIPTKVIPEERELLEKLA 355

Query: 373 FLK 375
            +K
Sbjct: 356 KIK 358

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q3MG81|DNAJ_ANAVT Chaperone protein DnaJ OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=dnaJ PE=3 SV=1

 Score =  263 bits (673), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 146/363 (40%), Positives = 200/363 (55%), Gaps = 40/363 (11%)

Query: 45  DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSV 104
           DYY  L V ++A  +EIK +YR+LARKYHPD+NK PGAEE+FKEI+ AYEVLS+ E R+ 
Sbjct: 4   DYYEILGVARDADKEEIKQAYRRLARKYHPDVNKEPGAEERFKEINRAYEVLSEPETRAR 63

Query: 105 YDRFGEAGITGEYDGLSNTSQGVDPFELYSAFF-----------------GGS------- 140
           YDRFG  G++G   G  + S      +++ + F                 GG        
Sbjct: 64  YDRFGPEGVSGAGVGFQDMSDMGGFADIFESIFSGFAGGGMGGPTQQRRRGGPARGDDLR 123

Query: 141 --------DGLFGGVGEAGGINFNFGNKGNFGLDIRCGGTGAKSSNCIQSCKACWGRGGV 192
                   + +FGG  E    +              C G+GAK     ++C  C G G V
Sbjct: 124 LDLKLDFREAVFGGEKEIRISHLETCET--------CSGSGAKPGTRPRTCSTCSGSGQV 175

Query: 193 LKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATM 252
            +  RTPFG  +QVSTC  C G G +I D C  C G G  Q  + +K+ IP GV NG  +
Sbjct: 176 RRVTRTPFGSFTQVSTCPTCNGTGMVIEDKCDACDGKGTNQVTKKLKITIPAGVDNGTRL 235

Query: 253 QIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVE 312
           +I+ EG+  +R    GDL+V L V+E +   RDG+N+ S+I V Y +AILG  +EV TV+
Sbjct: 236 RIQQEGDAGQRGGPPGDLYVYLFVNEDEEFQRDGINVISEIKVSYLQAILGCRLEVNTVD 295

Query: 313 GMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIA 372
           G  +L IP+G QP   +KL+  GVP + NP  RGDHL  V + IP  +   ER L+E++A
Sbjct: 296 GPVELIIPAGTQPNTVMKLENRGVPRLGNPVSRGDHLLTVLIDIPTKVIPEERELLEKLA 355

Query: 373 FLK 375
            +K
Sbjct: 356 KIK 358

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Anabaena variabilis (strain ATCC 29413 / PCC 7937) (taxid: 240292)

>sp|Q114R3|DNAJ_TRIEI Chaperone protein DnaJ OS=Trichodesmium erythraeum (strain IMS101) GN=dnaJ PE=3 SV=1

 Score =  262 bits (670), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 141/355 (39%), Positives = 202/355 (56%), Gaps = 28/355 (7%)

Query: 45  DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSV 104
           DYY  L V ++A  +E+K +YR+LARKYHPD+NK PG+EE+FKEI+ AYE+LSD E ++ 
Sbjct: 4   DYYEILGVSRSADKEELKRAYRRLARKYHPDVNKEPGSEERFKEINRAYEILSDPEMKAR 63

Query: 105 YDRFGEAGITGEYDGLSNTSQGVDPFELYSAFFGGSDGLFGGVGEAG------------- 151
           +DRFGEAG++G      +T       +++ +FF G    FGG G  G             
Sbjct: 64  FDRFGEAGVSGGAASGFSTDFSDSFADIFESFFSG----FGGAGTQGRRRTGPVRGDDLR 119

Query: 152 -GINFNFGNK---GNFGLDIR-------CGGTGAKSSNCIQSCKACWGRGGVLKTQRTPF 200
             +N  F      G+  L I+       C G+GAK     Q+C  C G G V +  RTPF
Sbjct: 120 LDLNLEFIEAIFGGDKELTIKHLETCGTCNGSGAKPGTKPQTCSTCGGTGQVRRATRTPF 179

Query: 201 GLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNF 260
              +QVS C  C G G+II + C  CGG G+ ++ + +K+ IP GV NG  +++  EG+ 
Sbjct: 180 SSFTQVSVCPSCNGSGQIIEEKCVDCGGRGQKEATKKIKITIPGGVDNGTRLRVSNEGDA 239

Query: 261 DRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIP 320
            R     GDL+V L V       RDG+N+ S+I + Y +AILG  +E+ TV+G  +L IP
Sbjct: 240 GRMGGPPGDLYVFLSVKNHPEFQRDGINIISQIKISYLQAILGCCLEINTVDGKTELTIP 299

Query: 321 SGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK 375
           SG QP   + L+  GVP + N   RG HL  + + IP  I+  E+ L+E++A +K
Sbjct: 300 SGTQPNAILTLEDKGVPRLGNSVSRGAHLITIEIDIPTKITPEEKELLEKLAKIK 354

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Trichodesmium erythraeum (strain IMS101) (taxid: 203124)

>sp|B0JW23|DNAJ_MICAN Chaperone protein DnaJ OS=Microcystis aeruginosa (strain NIES-843) GN=dnaJ PE=3 SV=1

 Score =  262 bits (670), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 143/353 (40%), Positives = 203/353 (57%), Gaps = 21/353 (5%)

Query: 44  TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRS 103
           TDYY  L V ++A  ++IK +YR+LARKYHPD+NK PGAEE FKEI+ AYE+LS+ E R+
Sbjct: 3   TDYYEILGVSRDAGKEDIKRAYRRLARKYHPDVNKEPGAEEHFKEINRAYEILSEPETRN 62

Query: 104 VYDRFGEAGITGEYDGLSNTSQG--VDPFELYSAFFGGSDGLFGGVGEAG-----GINFN 156
            YDRFGEAG++G   G    + G   D FE   + FGG  G        G      +  +
Sbjct: 63  RYDRFGEAGVSGGAAGFDPDNMGGFADIFETIFSGFGGMGGQATARRRTGPTRGEDLRLD 122

Query: 157 FGNK-------GNFGLDIR-------CGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGL 202
           F  K       G   + IR       C G+GA+     ++C  C G G V +  RTPFG 
Sbjct: 123 FRLKFREAVFGGEKEIRIRHLETCQTCKGSGARPGTSSRTCTTCSGTGQVRRATRTPFGT 182

Query: 203 ISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDR 262
            +QVS C  C G G++I + C  CGG+G  Q  + +K+ IP GV NG  +++  EG+   
Sbjct: 183 FAQVSVCPTCDGAGEVIEEKCDVCGGSGRRQETKKLKITIPAGVDNGMKLRVAREGDAGL 242

Query: 263 RRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSG 322
           +    GDLFV L V+      R+G ++ S I++ Y +AILG +++V TV+G +DL IP+G
Sbjct: 243 KGGPPGDLFVYLTVETDAEFQREGNDIKSDITISYIQAILGCTIKVNTVDGQEDLTIPAG 302

Query: 323 VQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK 375
            QP   + L+  GVP + NP  RGDH   V + IP  ++  ER L+E++A ++
Sbjct: 303 TQPNTVLILENKGVPKLGNPVSRGDHRITVKISIPTRVTGEERELLEKLAKVR 355

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Microcystis aeruginosa (strain NIES-843) (taxid: 449447)

>sp|Q7VEJ6|DNAJ_PROMA Chaperone protein DnaJ OS=Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) GN=dnaJ PE=3 SV=1

 Score =  261 bits (666), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 150/365 (41%), Positives = 206/365 (56%), Gaps = 26/365 (7%)

Query: 45  DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSV 104
           D+Y TL V +NA    +K +YR+LAR+YHPDINK  GAEE+FKEI  AYEVL D EKR+ 
Sbjct: 3   DFYDTLGVNRNADADSLKRAYRRLARQYHPDINKEAGAEERFKEIGRAYEVLGDPEKRAR 62

Query: 105 YDRFGEAGITGE--YDGLSNTSQGVDPFELYSAFFGGSDGLFGGVGEAG----------- 151
           YD+FGEAG+ G      + +     D FE + + FGG           G           
Sbjct: 63  YDQFGEAGLGGSAGMPDMGDMGGFADIFETFFSGFGGPGSSGARTQRRGPQQGDDLRYDL 122

Query: 152 GINFN---FGNKGNFGL------DIRCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGL 202
            I+FN   FG +    +      D+ C GTGAK      +C  C G G V +  RTPFG 
Sbjct: 123 TIDFNQAVFGQEREIKIPHLETCDV-CRGTGAKPGTGPTTCSTCGGAGQVRRATRTPFGS 181

Query: 203 ISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDR 262
            +QVS C  C G G++I D C+ CGG G  Q ++ +++ IP GV  G  +++ GEGN   
Sbjct: 182 FTQVSDCPTCSGSGQVISDSCQSCGGQGVKQVRKKLRINIPAGVDTGTRLRVSGEGNAGP 241

Query: 263 RRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSG 322
           R   +GDL+V L V     + RDGLN+ S+++V Y +AILG ++EV+TV+G   L+IPSG
Sbjct: 242 RGGPSGDLYVFLKVKSHARLKRDGLNIHSEVNVSYLQAILGDTIEVDTVDGPTTLQIPSG 301

Query: 323 VQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFL---KSPGK 379
            QP   + L   G+P + NP  RG+H   VN+ IP  ++D E+ L+E++A     K P  
Sbjct: 302 TQPSAVLILDNKGIPKLGNPVARGNHCISVNIKIPSRLTDDEKILLEKLAIYYSAKGPQN 361

Query: 380 WHSVS 384
            H  S
Sbjct: 362 HHHNS 366

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) (taxid: 167539)

>sp|B0CAZ0|DNAJ_ACAM1 Chaperone protein DnaJ OS=Acaryochloris marina (strain MBIC 11017) GN=dnaJ PE=3 SV=1

 Score =  259 bits (661), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 143/353 (40%), Positives = 197/353 (55%), Gaps = 21/353 (5%)

Query: 45  DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSV 104
           DYY  L V ++A   E+K SYR+LARKYHPD+NK PGAE+KFKEI+ AYE LSD + R  
Sbjct: 4   DYYDILGVSRSADPDELKRSYRRLARKYHPDVNKEPGAEDKFKEINKAYETLSDPQMRGR 63

Query: 105 YDRFGEAGITGE----YDGLSNTSQGVDPFELYSAFFGGS-DGLFGGVGEAGGINFNFGN 159
           YD+FGEAG++      Y    +     D FE + + FGGS        G A G +  F  
Sbjct: 64  YDQFGEAGVSSAAGAGYQDFGDFGGFADIFETFFSGFGGSPQSGRRRSGPARGEDLRFDL 123

Query: 160 KGNF-------GLDIR---------CGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLI 203
           K  F          IR         C GTGAK     Q+C  C G G V +  RTP G  
Sbjct: 124 KLKFREAVFGGEQQIRISHLESCKTCEGTGAKPGTRPQTCSTCQGSGQVRRMTRTPLGNF 183

Query: 204 SQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRR 263
           +QVS C  C G G+++ + C  CGG G+ Q  + +++ IP GV  G  +++  EG+  ++
Sbjct: 184 TQVSVCPTCNGQGQVVTEKCDSCGGRGQNQVSKKLQIKIPAGVDTGTRLRVSNEGDAGQK 243

Query: 264 RSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGV 323
               GDL+V L V E     RDG N+ S+  + Y +AILG  + V+TV+G + + IP+G 
Sbjct: 244 GGPPGDLYVYLFVQEDSEFRRDGTNVLSEFKISYLQAILGAQLPVKTVDGEETITIPAGT 303

Query: 324 QPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLKS 376
           QPG  + L+  GVP + NP  RGDHL  V + IP  IS  ER L+ ++A +++
Sbjct: 304 QPGTVLTLENHGVPRLGNPVSRGDHLITVIIDIPNRISTEERELLVQLASIRA 356

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Acaryochloris marina (strain MBIC 11017) (taxid: 329726)

>sp|B7KEJ8|DNAJ_CYAP7 Chaperone protein DnaJ OS=Cyanothece sp. (strain PCC 7424) GN=dnaJ PE=3 SV=1

 Score =  259 bits (661), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 146/359 (40%), Positives = 205/359 (57%), Gaps = 24/359 (6%)

Query: 45  DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSV 104
           DYY  L V ++A   EIK +YR+LARKYHPD+NK  GAEE+FKEI+ AYE+LS+ E R+ 
Sbjct: 4   DYYEILGVSRDANKDEIKRAYRRLARKYHPDVNKEIGAEERFKEINRAYEILSEPETRAR 63

Query: 105 YDRFGEAGIT-GEYDGLSNTSQG--VDPFE-LYSAFFGGSDGLFGG--VGEAGGINFNFG 158
           YDRFGEAG++ G   G      G   D FE ++S F G   G       G   G +    
Sbjct: 64  YDRFGEAGVSSGAGSGFEYGDMGGIADIFETIFSGFGGMGTGTSSRRRTGPVRGDDLRLD 123

Query: 159 NKGNF---------GLDIR-------CGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGL 202
            K NF          + IR       C G+GAK     ++C  C G G V +  RTPFG 
Sbjct: 124 FKLNFREAVFGGEKEIRIRHLETCQVCEGSGAKPGTGSRTCSTCSGSGQVRRATRTPFGT 183

Query: 203 ISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDR 262
            +QVS C  C G G++I + C  CGG+G  Q  + +K+ IP GV NG  +++  EG+  +
Sbjct: 184 FAQVSVCPTCNGSGEVIEEKCEACGGSGRKQETKKLKITIPAGVDNGTRLRVSREGDAGQ 243

Query: 263 RRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSG 322
           R    GDL+V L V+  +   R+G+++ S+IS+ Y +AILG  + V TV+G +++ I  G
Sbjct: 244 RGGPPGDLYVYLSVETDEEFQREGIDIKSEISISYLQAILGCRLSVNTVDGPEEITIEPG 303

Query: 323 VQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLKSPGKWH 381
            QP   + L   GVP + NP  RGDHL  +NV IP  ++  ER L+E++A ++  G+ H
Sbjct: 304 TQPNTVLTLPNRGVPKLGNPVARGDHLITINVSIPTRVNPEERELLEKLAKIR--GESH 360

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Cyanothece sp. (strain PCC 7424) (taxid: 65393)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	485
297734356	589	unnamed protein product [Vitis vinifera]	0.958	0.789	0.563	1e-149
356522869	525	PREDICTED: chaperone protein DnaJ-like [	0.917	0.847	0.582	1e-149
255577342	433	chaperone protein DNAj, putative [Ricinu	0.795	0.891	0.623	1e-148
359491526	497	PREDICTED: chaperone protein DnaJ-like [	0.781	0.762	0.616	1e-137
224135637	419	predicted protein [Populus trichocarpa]	0.651	0.754	0.680	1e-126
297830416	518	DNAJ heat shock family protein [Arabidop	0.880	0.824	0.534	1e-123
42564975	517	molecular chaperone Hsp40/DnaJ family pr	0.898	0.843	0.525	1e-122
9294487	438	DnaJ homolog [Arabidopsis thaliana]	0.696	0.771	0.617	1e-118
449439587	481	PREDICTED: chaperone protein DnaJ-like [	0.787	0.794	0.496	1e-109
414865579	705	TPA: hypothetical protein ZEAMMB73_81960	0.849	0.584	0.424	1e-105

>gi|297734356|emb|CBI15603.3| unnamed protein product [Vitis vinifera]

 Score =  536 bits (1380), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 292/518 (56%), Positives = 367/518 (70%), Gaps = 53/518 (10%)

Query: 1   MPVIASPSYVNLKLHLSTSFSF---KWNYCSGNNRSHRRGMIRAAGTDYYSTLNVRQNAT 57
           +P+  SP   N  L  +T F     KW          R G+IRAA +DYYSTLNV +N+T
Sbjct: 5   LPISKSPLISNSALPFNT-FRLRPPKW---------RRWGVIRAARSDYYSTLNVSRNST 54

Query: 58  LQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEY 117
           L+EIK+SYRKLARKYHPD+NKSPGAEEKFKEIS+AYEVLSDDEKRS+YDRFGEAG+ GEY
Sbjct: 55  LKEIKSSYRKLARKYHPDLNKSPGAEEKFKEISAAYEVLSDDEKRSLYDRFGEAGLEGEY 114

Query: 118 DGLSNTSQGVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIR--------- 168
           D  +  S+GVDPF+ + AFF  S+G FG  GE GG+NFN  +KGN GLD+R         
Sbjct: 115 DRSNGGSKGVDPFDFFDAFFDESNGPFGRWGEPGGMNFNSRSKGNQGLDVRYDLFLSFEE 174

Query: 169 -------------------CGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTC 209
                              CGGTGAKSS+CI++C  C G+GGV+KTQ+TPFG++SQVSTC
Sbjct: 175 SIFGKQEEIEVSCFEVCDNCGGTGAKSSSCIKTCTNCGGKGGVMKTQKTPFGIMSQVSTC 234

Query: 210 SKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGD 269
           SKCGGDGKII  HC+ CGG+G+VQSK+S++V+IPPGVS+GATMQ+RG+GNFD++R +AGD
Sbjct: 235 SKCGGDGKIITSHCQSCGGHGKVQSKQSIEVIIPPGVSDGATMQVRGKGNFDKKRGMAGD 294

Query: 270 LFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTV 329
           L++ LHV+EK GI RDGLNL+SK++VDYTEAILGT  +VETVEG++DL+IPSG QPGD+V
Sbjct: 295 LYLVLHVNEKHGIWRDGLNLYSKVNVDYTEAILGTVKKVETVEGLRDLQIPSGTQPGDSV 354

Query: 330 KLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLKSPGKWHSVSTNSTE 389
           KL  MGVPDIN PS RGDH F+VNVLIPKDISD ER LVE++A +++      VS+    
Sbjct: 355 KLSYMGVPDINRPSRRGDHNFVVNVLIPKDISDTERILVEKLASMRTTCNDQPVSSE--- 411

Query: 390 AAQRKSAKVRDWKMHCQGIKS--VGSWWNSVKCFLGQRQSQERFASVGVELPAPLW-SSK 446
                    +D K H    +S    S W S+K FL +  S+  FASV V+    L   S+
Sbjct: 412 ------GPAKDQKHHASPKRSEHAPSMWKSIKNFLWRNPSRTSFASVSVDTSTLLQRCSR 465

Query: 447 PDSFLMASVVTVFMITSIFNTVGKTDKWTSVRQRNQRR 484
           PDS LM S++TVF+IT IF  +GK++      +R + R
Sbjct: 466 PDSSLMISLLTVFIITCIFTLMGKSNTANYCLKREKER 503

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356522869|ref|XP_003530065.1| PREDICTED: chaperone protein DnaJ-like [Glycine max]

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 280/481 (58%), Positives = 351/481 (72%), Gaps = 36/481 (7%)

Query: 24  WNYCSGNNRSHRRGMIRA-AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGA 82
           + + +  NRS R  ++RA AGTDYYSTLNV  NATLQEIK SYRKLARKYHPD+NKSPGA
Sbjct: 46  FRFSTARNRS-RAAVVRAKAGTDYYSTLNVGPNATLQEIKASYRKLARKYHPDMNKSPGA 104

Query: 83  EEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYSAFFGGSDG 142
           E+KFKEIS+AYEVLSDDEKRS+YDRFGE+G+ G+ +G S  + GVDPF+L+  FFG SDG
Sbjct: 105 EDKFKEISAAYEVLSDDEKRSLYDRFGESGLQGD-NGGSTGAPGVDPFDLFDTFFGRSDG 163

Query: 143 LFGGVGEAGGINFNFGNKGNFGLDIR----------------------------CGGTGA 174
           +F GVG+ G  NFNF NK N   DIR                            C GTGA
Sbjct: 164 VF-GVGDEGSFNFNFRNKRNHVHDIRYDLHLSFEESIFGGQREIEVSCFQTCNMCDGTGA 222

Query: 175 KSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQS 234
           KS NCI+ C  C GRGG +KTQRTPFG++SQVSTCSKCGG GKII D CRRC G+G+VQS
Sbjct: 223 KSKNCIKQCTNCGGRGGEMKTQRTPFGMMSQVSTCSKCGGLGKIITDQCRRCDGSGQVQS 282

Query: 235 KRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKIS 294
           K++M+V IPPGV++G TMQI+G+GNFD++R + GDL+V LHVDEKQGI R+GL+L+SKIS
Sbjct: 283 KQTMEVEIPPGVNDGDTMQIQGQGNFDKKRQITGDLYVVLHVDEKQGIWREGLHLYSKIS 342

Query: 295 VDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNV 354
           +D+T+AILG+  +V+TVEG++DL+IPSG+QPGD+VKL  +GVPDIN PSVRGDH FIVNV
Sbjct: 343 IDFTDAILGSVKKVDTVEGLRDLQIPSGIQPGDSVKLSCLGVPDINKPSVRGDHYFIVNV 402

Query: 355 LIPKDISDPERALVEEIAFLKSPGKWHSVSTNSTEAAQRKSAKV--RDWKMHC--QGIKS 410
           LIPKDIS  ER LVE++A L++  K  S+S+N     + K  +   RD K     +GIK+
Sbjct: 403 LIPKDISGTERVLVEQLASLRASSKRDSLSSNDNGIPKGKFNEFIKRDPKGDASRKGIKN 462

Query: 411 VGSWWNSVKCFLGQRQSQERFASVGVELPAPLWSSKPDSFLMASVVTVFMITSIFNTVGK 470
           VGS W S+K FL   QS+ERFAS+ ++    LW S   + +      VF+IT IF ++ K
Sbjct: 463 VGSLWGSIKNFLRGGQSEERFASISMDTKVFLWRSGHQNPVPDYFFVVFIITWIFASIAK 522

Query: 471 T 471
           +
Sbjct: 523 S 523

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577342|ref|XP_002529551.1| chaperone protein DNAj, putative [Ricinus communis] gi|223530963|gb|EEF32820.1| chaperone protein DNAj, putative [Ricinus communis]

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 270/433 (62%), Positives = 321/433 (74%), Gaps = 47/433 (10%)

Query: 1   MPVIASPSYVNLK---------------LHLSTSFSFKWNYCSGNNRSHR--RGMIRAAG 43
           MP I  P Y NLK                H   S  F  ++   N +  R    +IRAA 
Sbjct: 1   MPAIQIPCYANLKSTFKPSSIPKSSISFCHGKVSLQFSSSFFRKNGKDRRCCNCVIRAAA 60

Query: 44  TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRS 103
           TD+YSTLNV +NATLQEIK+SYRKLARKYHPD+NK PGAEEKFKEIS+AYEVLSDDEKRS
Sbjct: 61  TDHYSTLNVDRNATLQEIKSSYRKLARKYHPDLNKGPGAEEKFKEISAAYEVLSDDEKRS 120

Query: 104 VYDRFGEAGITGEYDGLSNTSQGVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNF 163
           +YDRFGEAG+ GEYDG S+ SQG+DPF++Y+AFFG SDG FGG+GEAGGI FN  N G  
Sbjct: 121 LYDRFGEAGLQGEYDG-SSGSQGMDPFDIYNAFFGDSDGFFGGMGEAGGIKFNMRNTGK- 178

Query: 164 GLDIR----------------------------CGGTGAKSSNCIQSCKACWGRGGVLKT 195
            LDIR                            CGGTGAKSS+ I+SC  C GRGGV+KT
Sbjct: 179 DLDIRYNLNVSFEESIFGGQQEIEFSCFETCDKCGGTGAKSSSSIKSCADCGGRGGVMKT 238

Query: 196 QRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIR 255
           QRTPFG++SQVSTCSKC GDGK+I DHC++CGGNG V +KRS+K+VIPPG+S+GA M+I+
Sbjct: 239 QRTPFGMMSQVSTCSKCNGDGKLITDHCQKCGGNGNVSTKRSIKIVIPPGISDGALMRIQ 298

Query: 256 GEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMK 315
           GEGNFD++R +AGDL++ LH++EK GI RDGLNL+SKISVDYT AILGT ++V+TV+G+K
Sbjct: 299 GEGNFDKKRGIAGDLYITLHINEKHGIWRDGLNLYSKISVDYTRAILGTVIKVKTVDGLK 358

Query: 316 DLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK 375
           DL+IPSG+Q G+TVKL  MGVPD+N P VRGDH FIVNVLIPKDISD ERALVEE+A L 
Sbjct: 359 DLQIPSGIQNGETVKLSWMGVPDVNKPFVRGDHHFIVNVLIPKDISDKERALVEELASLA 418

Query: 376 SPGKWHSVSTNST 388
           S  K H    NS+
Sbjct: 419 SYRKHHEAPINSS 431

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491526|ref|XP_002279102.2| PREDICTED: chaperone protein DnaJ-like [Vitis vinifera]

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 259/420 (61%), Positives = 319/420 (75%), Gaps = 41/420 (9%)

Query: 1   MPVIASPSYVNLKLHLSTSFSF---KWNYCSGNNRSHRRGMIRAAGTDYYSTLNVRQNAT 57
           +P+  SP   N  L  +T F     KW          R G+IRAA +DYYSTLNV +N+T
Sbjct: 5   LPISKSPLISNSALPFNT-FRLRPPKW---------RRWGVIRAARSDYYSTLNVSRNST 54

Query: 58  LQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEY 117
           L+EIK+SYRKLARKYHPD+NKSPGAEEKFKEIS+AYEVLSDDEKRS+YDRFGEAG+ GEY
Sbjct: 55  LKEIKSSYRKLARKYHPDLNKSPGAEEKFKEISAAYEVLSDDEKRSLYDRFGEAGLEGEY 114

Query: 118 DGLSNTSQGVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIR--------- 168
           D  +  S+GVDPF+ + AFF  S+G FG  GE GG+NFN  +KGN GLD+R         
Sbjct: 115 DRSNGGSKGVDPFDFFDAFFDESNGPFGRWGEPGGMNFNSRSKGNQGLDVRYDLFLSFEE 174

Query: 169 -------------------CGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTC 209
                              CGGTGAKSS+CI++C  C G+GGV+KTQ+TPFG++SQVSTC
Sbjct: 175 SIFGKQEEIEVSCFEVCDNCGGTGAKSSSCIKTCTNCGGKGGVMKTQKTPFGIMSQVSTC 234

Query: 210 SKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGD 269
           SKCGGDGKII  HC+ CGG+G+VQSK+S++V+IPPGVS+GATMQ+RG+GNFD++R +AGD
Sbjct: 235 SKCGGDGKIITSHCQSCGGHGKVQSKQSIEVIIPPGVSDGATMQVRGKGNFDKKRGMAGD 294

Query: 270 LFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTV 329
           L++ LHV+EK GI RDGLNL+SK++VDYTEAILGT  +VETVEG++DL+IPSG QPGD+V
Sbjct: 295 LYLVLHVNEKHGIWRDGLNLYSKVNVDYTEAILGTVKKVETVEGLRDLQIPSGTQPGDSV 354

Query: 330 KLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLKSPGKWHSVSTNSTE 389
           KL  MGVPDIN PS RGDH F+VNVLIPKDISD ER LVE++A +++      VS+  TE
Sbjct: 355 KLSYMGVPDINRPSRRGDHNFVVNVLIPKDISDTERILVEKLASMRTTCNDQPVSSEGTE 414

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135637|ref|XP_002322123.1| predicted protein [Populus trichocarpa] gi|222869119|gb|EEF06250.1| predicted protein [Populus trichocarpa]

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 234/344 (68%), Positives = 283/344 (82%), Gaps = 28/344 (8%)

Query: 45  DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSV 104
           DYYSTLNV +NATLQEIK+SYRKLARKYHPD+NK  GAE+KFKEIS+AYEVLSDDEKRS+
Sbjct: 74  DYYSTLNVSRNATLQEIKSSYRKLARKYHPDMNKGAGAEDKFKEISAAYEVLSDDEKRSL 133

Query: 105 YDRFGEAGITGEYDGLSNTSQGVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFG 164
           YDRFGEAG+ GE+DG  + SQ VDPFE+Y+ FFGGSDG FGG G  G +NFNF N GN  
Sbjct: 134 YDRFGEAGLQGEFDGSGSGSQEVDPFEIYNTFFGGSDGFFGGRGGDGVLNFNFRNMGNQD 193

Query: 165 LDIR----------------------------CGGTGAKSSNCIQSCKACWGRGGVLKTQ 196
           LDIR                            C GTGAKSS+CI+SC  C GRGGV+KTQ
Sbjct: 194 LDIRYDLYLSLEESVFGGQREIEVSFFETCDSCSGTGAKSSSCIKSCADCGGRGGVVKTQ 253

Query: 197 RTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRG 256
           RTPFG++SQVSTC+KC G+G++I DHCR+CGGNG+++SKRSMKVV P GV++GATM+I+G
Sbjct: 254 RTPFGMMSQVSTCAKCSGEGEVITDHCRKCGGNGKIRSKRSMKVVFPAGVNDGATMRIQG 313

Query: 257 EGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKD 316
           EG+F+++R +AGDLF++LHV+EKQGI R+GLNL+SKI+VDYT+AILGT ++VETVEG+KD
Sbjct: 314 EGSFNKKRGIAGDLFISLHVNEKQGIWRNGLNLYSKINVDYTQAILGTVLKVETVEGLKD 373

Query: 317 LRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDI 360
           L+IPSG+QPGD VKL ++GVPDIN PSVRGDH FIVN+LIPKDI
Sbjct: 374 LQIPSGIQPGDVVKLLRLGVPDINKPSVRGDHHFIVNILIPKDI 417

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830416|ref|XP_002883090.1| DNAJ heat shock family protein [Arabidopsis lyrata subsp. lyrata] gi|297328930|gb|EFH59349.1| DNAJ heat shock family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 249/466 (53%), Positives = 322/466 (69%), Gaps = 39/466 (8%)

Query: 34  HRRGMIRAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAY 93
            RR +I AAG D+YSTLNV +NATLQEIK+SYRKLARKYHPD+NK+PGAE+KFK+IS+AY
Sbjct: 52  RRRVIIMAAGKDHYSTLNVNRNATLQEIKSSYRKLARKYHPDMNKNPGAEDKFKQISAAY 111

Query: 94  EVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYSAFFGGSDGLFGGVGEAGGI 153
           EVLSD+EKRSVYDRFGEAG+  +++G  +TS GVDPF+LYSAFFGGSDG FG +GE+GG+
Sbjct: 112 EVLSDEEKRSVYDRFGEAGLERDFNGSQDTSPGVDPFDLYSAFFGGSDGFFGEMGESGGM 171

Query: 154 NFNFGNKGNFGLDIRC----------------------------GGTGAKSSNCIQSCKA 185
            F+F NK +  LDIRC                            GGTGAKSSN I+ C +
Sbjct: 172 GFDFMNKRSLDLDIRCDLRLSFEEAVFGVKREIEVSYLETCDGCGGTGAKSSNAIKQCSS 231

Query: 186 CWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPG 245
           C G+G V+ +QRTPFG++SQVSTCSKCGG+GKII D CR+C GNG ++S++ M VV+PPG
Sbjct: 232 CDGKGRVMNSQRTPFGIMSQVSTCSKCGGEGKIITDKCRKCIGNGRLRSRKKMDVVVPPG 291

Query: 246 VSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTS 305
           VS+ ATM+I+GEGN D+R   AGDLF+ L VDEK+GI R+GLNL+S I++D+T+AILG +
Sbjct: 292 VSDRATMRIQGEGNVDKRSGRAGDLFIVLQVDEKRGIRREGLNLYSNINIDFTDAILGVT 351

Query: 306 MEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPER 365
            +VETVEG  DLRIP G QPGDTVKL + GVPD + PS+RGDH F+V V IPK +S+ ER
Sbjct: 352 TKVETVEGTMDLRIPPGTQPGDTVKLPRKGVPDTDRPSIRGDHCFVVKVSIPKKLSERER 411

Query: 366 ALVEEIAFLKSPGKWHSVSTNSTEAAQRKSAKVRDWKMHCQGIKSVGSWWNSVKCFLGQR 425
            LVEE  F        S   N T        +  +     +  K   S W+ +K F+   
Sbjct: 412 KLVEE--FSSLRRSSSSTGPNET--------RQEEHSFGSEPRKEPPSLWHKMKNFIRPE 461

Query: 426 QSQERFASVGVELPAPLWSSK-PDSFLMASVVTVFMITSIFNTVGK 470
            S+ +F ++ +    PL   K  ++ ++ SV+ + +ITS    V K
Sbjct: 462 DSRTKFGTMSLNPSLPLRGMKVSETSIVISVLALCVITSAVALVQK 507

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42564975|ref|NP_188410.2| molecular chaperone Hsp40/DnaJ family protein [Arabidopsis thaliana] gi|115646890|gb|ABJ17154.1| At3g17830 [Arabidopsis thaliana] gi|332642491|gb|AEE76012.1| molecular chaperone Hsp40/DnaJ family protein [Arabidopsis thaliana]

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 251/478 (52%), Positives = 332/478 (69%), Gaps = 42/478 (8%)

Query: 34  HRRGMIRAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAY 93
            RR +  AAGTD+YSTLNV +NATLQEIK+SYRKLARKYHPD+NK+PGAE+KFK+IS+AY
Sbjct: 52  RRRVITMAAGTDHYSTLNVNRNATLQEIKSSYRKLARKYHPDMNKNPGAEDKFKQISAAY 111

Query: 94  EVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYSAFFGGSDGLFGGVGEAGGI 153
           EVLSD+EKRS YDRFGEAG+ G+++G  +TS GVDPF+LYSAFFGGSDG FGG+GE+GG+
Sbjct: 112 EVLSDEEKRSAYDRFGEAGLEGDFNGSQDTSPGVDPFDLYSAFFGGSDGFFGGMGESGGM 171

Query: 154 NFNFGNKGNFGLDIR----------------------------CGGTGAKSSNCIQSCKA 185
            F+F NK +  LDIR                            CGGTGAKSSN I+ C +
Sbjct: 172 GFDFMNKRSLDLDIRYDLRLSFEEAVFGVKREIEVSYLETCDGCGGTGAKSSNSIKQCSS 231

Query: 186 CWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPG 245
           C G+G V+ +QRTPFG++SQVSTCSKCGG+GK I D CR+C GNG +++++ M VV+PPG
Sbjct: 232 CDGKGRVMNSQRTPFGIMSQVSTCSKCGGEGKTITDKCRKCIGNGRLRARKKMDVVVPPG 291

Query: 246 VSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTS 305
           VS+ ATM+I+GEGN D+R   AGDLF+ L VDEK+GI R+GLNL+S I++D+T+AILG +
Sbjct: 292 VSDRATMRIQGEGNMDKRSGRAGDLFIVLQVDEKRGIRREGLNLYSNINIDFTDAILGAT 351

Query: 306 MEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPER 365
            +VETVEG  DLRIP G QPGDTVKL + GVPD + PS+RGDH F+V + IPK +S+ ER
Sbjct: 352 TKVETVEGSMDLRIPPGTQPGDTVKLPRKGVPDTDRPSIRGDHCFVVKISIPKKLSERER 411

Query: 366 ALVEEIAFLKSPGKWHSVSTNSTEAAQRKSAKVRDWKMHCQGIKSVGSWWNSVKCFLGQR 425
            LVEE + L+      S ST  TE  Q + +   + +          S W+ +K F+   
Sbjct: 412 KLVEEFSSLRR----SSSSTGPTETRQEEQSFGSEPRKE-------PSLWHKMKNFIRPE 460

Query: 426 QSQERFASVGVELPAPLWSSK-PDSFLMASVVTVFMITSIFNTVGKTDKWTSVRQRNQ 482
            S+ +F ++ +    PL   K  ++ +  SV+ + +ITS    V K  K   ++Q+ +
Sbjct: 461 DSRTKFGTMSLNPSLPLRRMKVSETSIAFSVLALCVITSAVALVQK--KGNRLKQKKE 516

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9294487|dbj|BAB02706.1| DnaJ homolog [Arabidopsis thaliana]

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 226/366 (61%), Positives = 283/366 (77%), Gaps = 28/366 (7%)

Query: 34  HRRGMIRAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAY 93
            RR +  AAGTD+YSTLNV +NATLQEIK+SYRKLARKYHPD+NK+PGAE+KFK+IS+AY
Sbjct: 52  RRRVITMAAGTDHYSTLNVNRNATLQEIKSSYRKLARKYHPDMNKNPGAEDKFKQISAAY 111

Query: 94  EVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYSAFFGGSDGLFGGVGEAGGI 153
           EVLSD+EKRS YDRFGEAG+ G+++G  +TS GVDPF+LYSAFFGGSDG FGG+GE+GG+
Sbjct: 112 EVLSDEEKRSAYDRFGEAGLEGDFNGSQDTSPGVDPFDLYSAFFGGSDGFFGGMGESGGM 171

Query: 154 NFNFGNKGNFGLDIR----------------------------CGGTGAKSSNCIQSCKA 185
            F+F NK +  LDIR                            CGGTGAKSSN I+ C +
Sbjct: 172 GFDFMNKRSLDLDIRYDLRLSFEEAVFGVKREIEVSYLETCDGCGGTGAKSSNSIKQCSS 231

Query: 186 CWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPG 245
           C G+G V+ +QRTPFG++SQVSTCSKCGG+GK I D CR+C GNG +++++ M VV+PPG
Sbjct: 232 CDGKGRVMNSQRTPFGIMSQVSTCSKCGGEGKTITDKCRKCIGNGRLRARKKMDVVVPPG 291

Query: 246 VSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTS 305
           VS+ ATM+I+GEGN D+R   AGDLF+ L VDEK+GI R+GLNL+S I++D+T+AILG +
Sbjct: 292 VSDRATMRIQGEGNMDKRSGRAGDLFIVLQVDEKRGIRREGLNLYSNINIDFTDAILGAT 351

Query: 306 MEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPER 365
            +VETVEG  DLRIP G QPGDTVKL + GVPD + PS+RGDH F+V + IPK +S+ ER
Sbjct: 352 TKVETVEGSMDLRIPPGTQPGDTVKLPRKGVPDTDRPSIRGDHCFVVKISIPKKLSERER 411

Query: 366 ALVEEI 371
            LVEE 
Sbjct: 412 KLVEEF 417

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439587|ref|XP_004137567.1| PREDICTED: chaperone protein DnaJ-like [Cucumis sativus]

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 211/425 (49%), Positives = 281/425 (66%), Gaps = 43/425 (10%)

Query: 93  YEVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYSAFFGGSDGLFGGVGEAGG 152
           + VLSDDEKRS+YD+  EAG+ G+Y  +S  S+GVDPF+++ AFFGGSDGLF      GG
Sbjct: 61  FTVLSDDEKRSLYDQLSEAGVHGDYGVMSRDSRGVDPFDIFDAFFGGSDGLFRESDGIGG 120

Query: 153 INFNFGNKGNFGLDIR----------------------------CGGTGAKSSNCIQSCK 184
           IN N  ++    LDI                             C GTGAKS++CI+ C 
Sbjct: 121 INLNQRSEKIQSLDIHYALHLSFEESVFGGEKTIQFSFFETCENCDGTGAKSNSCIKLCA 180

Query: 185 ACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPP 244
            C GRGGV+KTQ+TPFG++SQVS CS+CGGDGK I + CR CGG G++QS + M +VIPP
Sbjct: 181 NCHGRGGVVKTQKTPFGMMSQVSICSECGGDGKKITNLCRSCGGGGQLQSIKKMSLVIPP 240

Query: 245 GVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGT 304
           GVS+GATM+I+ EG+ D +R + GDL++ LH+ EK GI RDG++L+S IS+DYTEAILGT
Sbjct: 241 GVSDGATMKIQREGSSDMKRGMTGDLYIMLHIGEKHGIWRDGIHLYSNISIDYTEAILGT 300

Query: 305 SMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPE 364
           +++VETVEG+KDL+IP+GVQPGD V+L  MG+PDIN PSVRGDHLFIVNV IPK +SD E
Sbjct: 301 TVKVETVEGLKDLQIPAGVQPGDRVRLSCMGIPDINKPSVRGDHLFIVNVQIPKRMSDSE 360

Query: 365 RALVEEIAFLKSPGKWHSVSTNSTEAAQRKSAKVRDWKMHC--QGIKSVGSWWNSVKCFL 422
           R  ++E+A LK+  K   V T+             +   H   Q IK   S W+S+K F+
Sbjct: 361 RTKIKELALLKASTKNDEVYTHGMPLGTFDKHTDENQGNHASSQAIKRHRSLWSSIKYFI 420

Query: 423 GQRQSQERFASVGVELPAP-------LWSSKPDSFLMASVVTVFMITSIFNTVGKTDKWT 475
            +RQ +E FAS+G+E+  P       L SS  DS +M     V ++TS+F  +G+   WT
Sbjct: 421 RKRQPREGFASIGIEISKPSCWRPLKLHSSYTDSLIM-----VVIVTSVF-LMGRNYFWT 474

Query: 476 SVRQR 480
            +R++
Sbjct: 475 LLRRK 479

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414865579|tpg|DAA44136.1| TPA: hypothetical protein ZEAMMB73_819602 [Zea mays]

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 211/497 (42%), Positives = 295/497 (59%), Gaps = 85/497 (17%)

Query: 45  DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSV 104
           DYY+TLN+R+++TLQEIK++YR LARKYHPD+NKSP AEEKFKEIS+AYEVLSD +KRS+
Sbjct: 85  DYYATLNIRRDSTLQEIKSAYRILARKYHPDMNKSPEAEEKFKEISAAYEVLSDQDKRSL 144

Query: 105 YDRFGEAGITGEYDGLSNTSQGVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFG 164
           YDRFGE G++G+Y      + G+DP+EL++AFFG SD LFG    +GG +++   K N  
Sbjct: 145 YDRFGEEGLSGDYRNGDIGTHGIDPYELFNAFFGSSDKLFGDSMGSGGFHYSAEAKDNRA 204

Query: 165 LDIR----------------------------CGGTGAKSSNCIQSCKACWGRGGVLKTQ 196
           L+I                             C GTGAK SN I  C  C G+G ++KTQ
Sbjct: 205 LNISYNLLLSFEESILGGKREINVFRHETCGTCHGTGAKCSNDITECTRCRGQGRLMKTQ 264

Query: 197 RTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRG 256
           RTPFG++SQ+S+C  C G GK+I +HC  C G+G VQ +R +KV IP G+ +G+T++I G
Sbjct: 265 RTPFGIVSQISSCLNCEGSGKVITEHCTECYGSGRVQIERIIKVDIPGGIDDGSTIRISG 324

Query: 257 EGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKD 316
            GN D++R  +GDL++ + V++KQGIHRDGLNL+S  SVDYT+ ILGT+++VET+EG+KD
Sbjct: 325 GGNVDKQRGASGDLYIFVRVNKKQGIHRDGLNLYSDASVDYTDVILGTTVKVETIEGLKD 384

Query: 317 LRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPK------------------ 358
           L IP G QPG+ +K  Q+GVPDI  P+VRGDH F++ V+I +                  
Sbjct: 385 LHIPPGTQPGENLKFSQLGVPDIKKPNVRGDHYFMIKVVITEVGDGTNTKFWKDKWLYGW 444

Query: 359 ----DISDP-------------------------ERALVEEIAFLKSPGKWHSVSTNSTE 389
               ++ D                          ER LVEE+A LK        + N + 
Sbjct: 445 QLQPEVEDKHVFSIAPNGIYSTKIAYEGFFLGGQERLLVEELAALKK-------AQNISV 497

Query: 390 AAQRKSAKVRDWKMHCQGIKSVGSWWNSVKCFLGQRQSQERFASVGVELPAPLWSS-KPD 448
               K    R+   H    +   S+W  V  F    +  +RFAS+ V+   P W+S +  
Sbjct: 498 PEPTKIENFRERNHHPSAKRR--SFWGRVWNFFRDDKGDKRFASISVQPIIPGWNSCRGT 555

Query: 449 SFLMASVVTVFMITSIF 465
              +  ++  F++T+IF
Sbjct: 556 DTAVPLLLKGFLMTAIF 572

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	485
TAIR|locus:2088585	517	AT3G17830 [Arabidopsis thalian	0.620	0.582	0.488	3.5e-75
TAIR|locus:2140035	447	AT4G39960 [Arabidopsis thalian	0.418	0.454	0.411	3.7e-72
TAIR|locus:2041258	442	AT2G22360 [Arabidopsis thalian	0.698	0.766	0.413	7.4e-66
TAIR|locus:2016234	500	AT1G80030 [Arabidopsis thalian	0.523	0.508	0.456	4e-58
TIGR_CMR|BA_4538	371	BA_4538 "chaperone protein dna	0.418	0.547	0.338	4.2e-55
TIGR_CMR|CHY_0416	381	CHY_0416 "chaperone protein dn	0.414	0.527	0.339	4.2e-55
UNIPROTKB|P95830	378	dnaJ "Chaperone protein DnaJ"	0.418	0.537	0.318	6.1e-54
TIGR_CMR|SO_1127	378	SO_1127 "chaperone protein Dna	0.608	0.780	0.306	8.7e-51
TIGR_CMR|GSU_0034	373	GSU_0034 "chaperone protein dn	0.410	0.533	0.338	3.7e-50
UNIPROTKB|Q47XI7	378	dnaJ "Chaperone protein DnaJ"	0.430	0.552	0.320	9.2e-47

TAIR|locus:2088585 AT3G17830 [Arabidopsis thaliana (taxid:3702)]

 Score = 758 (271.9 bits), Expect = 3.5e-75, P = 3.5e-75
 Identities = 154/315 (48%), Positives = 212/315 (67%)

Query:   169 CGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGG 228
             CGGTGAKSSN I+ C +C G+G V+ +QRTPFG++SQVSTCSKCGG+GK I D CR+C G
Sbjct:   215 CGGTGAKSSNSIKQCSSCDGKGRVMNSQRTPFGIMSQVSTCSKCGGEGKTITDKCRKCIG 274

Query:   229 NGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLN 288
             NG +++++ M VV+PPGVS+ ATM+I+GEGN D+R   AGDLF+ L VDEK+GI R+GLN
Sbjct:   275 NGRLRARKKMDVVVPPGVSDRATMRIQGEGNMDKRSGRAGDLFIVLQVDEKRGIRREGLN 334

Query:   289 LFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDH 348
             L+S I++D+T+AILG + +VETVEG  DLRIP G QPGDTVKL + GVPD + PS+RGDH
Sbjct:   335 LYSNINIDFTDAILGATTKVETVEGSMDLRIPPGTQPGDTVKLPRKGVPDTDRPSIRGDH 394

Query:   349 LFIVNVLIPKDISDPERALVEEIAFLKSPGKWHSVSTNSTEAAQRKSAKVRDWKMHCQGI 408
              F+V + IPK +S+ ER LVEE + L+      S ST  TE  Q + +   + +      
Sbjct:   395 CFVVKISIPKKLSERERKLVEEFSSLRRS----SSSTGPTETRQEEQSFGSEPRKE---- 446

Query:   409 KSVGSWWNSVKCFLGQRQSQERFASVGVELPAPLWSSKPDSFLMA-SVVTVFMITSIFNT 467
                 S W+ +K F+    S+ +F ++ +    PL   K     +A SV+ + +ITS    
Sbjct:   447 ---PSLWHKMKNFIRPEDSRTKFGTMSLNPSLPLRRMKVSETSIAFSVLALCVITSAVAL 503

Query:   468 VGKTDKWTSVRQRNQ 482
             V K  K   ++Q+ +
Sbjct:   504 VQK--KGNRLKQKKE 516

GO:0005524 "ATP binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0009408 "response to heat" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

TAIR|locus:2140035 AT4G39960 [Arabidopsis thaliana (taxid:3702)]

 Score = 437 (158.9 bits), Expect = 3.7e-72, Sum P(2) = 3.7e-72
 Identities = 84/204 (41%), Positives = 123/204 (60%)

Query:   169 CGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGG 228
             C G+GAK+      CK C G+G V+ + RTP G+  QV TCS C G G+I    C  C G
Sbjct:   233 CNGSGAKAGTKPTKCKTCGGQGQVVASTRTPLGVFQQVMTCSPCNGTGEIS-KPCGACSG 291

Query:   229 NGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLN 288
             +G V+  + + + +P GV +G+ +++RGEGN  +R    GDLF  + V     + RD  N
Sbjct:   292 DGRVRRTKRISLKVPAGVDSGSRLRVRGEGNAGKRGGSPGDLFAVIEVIPDPVLKRDDTN 351

Query:   289 LFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDH 348
             +     + Y +AILGT+++V TV+G  DL++P+G QP  T+ + + GVP +N   +RGD 
Sbjct:   352 ILYTCKISYVDAILGTTLKVPTVDGEVDLKVPAGTQPSTTLVMAKKGVPVLNKSKMRGDQ 411

Query:   349 LFIVNVLIPKDISDPERALVEEIA 372
             L  V V IPK +S  E+ LVEE+A
Sbjct:   412 LVRVQVEIPKRLSKEEKMLVEELA 435

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0009408 "response to heat" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

TAIR|locus:2041258 AT2G22360 [Arabidopsis thaliana (taxid:3702)]

 Score = 670 (240.9 bits), Expect = 7.4e-66, P = 7.4e-66
 Identities = 148/358 (41%), Positives = 202/358 (56%)

Query:    32 RSHRRGMIRAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISS 91
             R   R  +RA   DYYS L V +NAT  EIK++YRKLAR YHPD+NK PGAEEKFKEIS+
Sbjct:    74 RRGSRFTVRA-DADYYSVLGVSKNATKAEIKSAYRKLARNYHPDVNKDPGAEEKFKEISN 132

Query:    92 AYEVLSDDEKRSVYDRFGEAGITGEYD-GLSNTSQGVDPFE-LYSAXXXXXXXXXXXXX- 148
             AYEVLSDDEK+S+YDR+GEAG+ G    G  + S   D F+ L+                
Sbjct:   133 AYEVLSDDEKKSLYDRYGEAGLKGAAGFGNGDFSNPFDLFDSLFEGFGGGMGRGSRSRAV 192

Query:   149 -------EAXXXXXXXXXXXXXXLDIR----CG---GTGAKSSNCIQSCKACWGRGGVLK 194
                                    ++I     CG   G+GAK       C  C G+G V+ 
Sbjct:   193 DGQDEYYTLILNFKEAVFGMEKEIEISRLESCGTCEGSGAKPGTKPTKCTTCGGQGQVVS 252

Query:   195 TQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQI 254
               RTP G+  QV TCS C G G+I    C  C G+G V+  + + + +P GV +G+ +++
Sbjct:   253 AARTPLGVFQQVMTCSSCNGTGEISTP-CGTCSGDGRVRKTKRISLKVPAGVDSGSRLRV 311

Query:   255 RGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGM 314
             RGEGN  +R    GDLFV + V     + RD  N+     + Y +AILGT+++V TV+G 
Sbjct:   312 RGEGNAGKRGGSPGDLFVVIEVIPDPILKRDDTNILYTCKISYIDAILGTTLKVPTVDGT 371

Query:   315 KDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIA 372
              DL++P+G QP  T+ + + GVP +N  ++RGD L  V V IPK +S  E+ L+EE+A
Sbjct:   372 VDLKVPAGTQPSTTLVMAKKGVPVLNKSNMRGDQLVRVQVEIPKRLSKEEKKLIEELA 429

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0009408 "response to heat" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

TAIR|locus:2016234 AT1G80030 [Arabidopsis thaliana (taxid:3702)]

 Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 120/263 (45%), Positives = 170/263 (64%)

Query:   169 CGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGG 228
             C GTGAK+ + ++ C  C GRG V++T++TPFG+ SQVS C  CGGDG++I ++CR+C G
Sbjct:   225 CAGTGAKAGSKMRICSTCGGRGQVMRTEQTPFGMFSQVSICPNCGGDGEVISENCRKCSG 284

Query:   229 NGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLN 288
              G V+ K+S+KV IPPGVS G+ +++ GEG+   R    GDL+V L V++ +GI RDG+N
Sbjct:   285 EGRVRIKKSIKVKIPPGVSAGSILRVAGEGDSGPRGGPPGDLYVYLDVEDVRGIERDGIN 344

Query:   289 LFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDH 348
             L S +S+ Y +AILG  ++V+TVEG  +L+IP G QPGD + L + GVP +N PS+RGDH
Sbjct:   345 LLSTLSISYLDAILGAVVKVKTVEGDTELQIPPGTQPGDVLVLAKKGVPKLNRPSIRGDH 404

Query:   349 LFIVNVLIPKDISDPERALVEEIAFLKSPG--------KWHSVSTNSTEAAQRKSAKVRD 400
             LF V V +P  IS  ER L+EE+A LK           K    ST ST  +  ++ K  +
Sbjct:   405 LFTVKVSVPNQISAGERELLEELASLKDTSSNRSRTRAKPQQPSTLSTAPSGSENKK-DE 463

Query:   401 WKMHCQGIKSVGSWWNSVKCFLG 423
              K   +  +     WN++K F G
Sbjct:   464 VKEENEEPEQENYLWNNIKEFAG 486

GO:0005524 "ATP binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0009408 "response to heat" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

TIGR_CMR|BA_4538 BA_4538 "chaperone protein dnaJ" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 359 (131.4 bits), Expect = 4.2e-55, Sum P(2) = 4.2e-55
 Identities = 69/204 (33%), Positives = 113/204 (55%)

Query:   169 CGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGG 228
             C G+GAK     ++CK C G G V   Q TPFG I     CS C G G++I + C  C G
Sbjct:   149 CKGSGAKPGTSKETCKHCSGSGQVSVEQNTPFGRIVNRQACSHCSGTGQMIKEKCTTCHG 208

Query:   229 NGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLN 288
             +G+V+ ++ + V IP G+ NG  +++ G+G        AGDL+V +HV   +   R+G +
Sbjct:   209 SGKVRKRKKINVKIPAGIDNGQQIRVSGKGEAGVNGGPAGDLYVVVHVRSHEFFEREGDH 268

Query:   289 LFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDH 348
             +  ++ + + +  LG  +EV TV G   L+IP+G Q G   +L+  G P++     +GD 
Sbjct:   269 IICEMPLTFAQMALGAEVEVPTVHGKVKLKIPAGTQTGTEFRLKGKGAPNVRGYG-QGDQ 327

Query:   349 LFIVNVLIPKDISDPERALVEEIA 372
               +V V++P  ++  ++ L+ E A
Sbjct:   328 YVVVRVVVPTKLTSHQKDLLREFA 351

GO:0009408 "response to heat" evidence=ISS

TIGR_CMR|CHY_0416 CHY_0416 "chaperone protein dnaJ" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 325 (119.5 bits), Expect = 4.2e-55, Sum P(2) = 4.2e-55
 Identities = 69/203 (33%), Positives = 111/203 (54%)

Query:   169 CGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGG 228
             C G GA+    I +C  C GRG + +  +T FG + +   CS C G+GKI    CR CGG
Sbjct:   155 CHGNGAEPGTPIITCPTCQGRGQIHQEVKTLFGRMVRSQVCSTCRGEGKIPKTPCRECGG 214

Query:   229 NGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLN 288
             +G V+  RS+ V IPPG+ +G  ++I G G   R     GDL+V + +   +   R+ ++
Sbjct:   215 SGLVRKTRSITVKIPPGIDHGHRLRIAGGGEAGRFGGPPGDLYVYIKIKPHKLFKREDIH 274

Query:   289 LFSKISVDYTEAILGTSMEVETVEGMKD-LRIPSGVQPGDTVKLQQMGVPDINNPSVRGD 347
             L  +  + + +A LG  +E+ T++G  + L IP G Q G    ++  GVP +N  S RG+
Sbjct:   275 LKLEKEISFVQAALGAKVEIPTIDGGTEILEIPEGTQTGTVFTIKGKGVPVVNG-SGRGN 333

Query:   348 HLFIVNVLIPKDISDPERALVEE 370
                 V V+ P  +++ ++ L+ E
Sbjct:   334 LYVTVKVVTPTKLTERQKQLLRE 356

GO:0006457 "protein folding" evidence=ISS

GO:0009408 "response to heat" evidence=ISS

UNIPROTKB|P95830 dnaJ "Chaperone protein DnaJ" [Streptococcus pneumoniae TIGR4 (taxid:170187)]

 Score = 318 (117.0 bits), Expect = 6.1e-54, Sum P(2) = 6.1e-54
 Identities = 65/204 (31%), Positives = 105/204 (51%)

Query:   169 CGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGG 228
             C G+GAK      +C  C G G +    +TP G++ +  TC  C G GK I   C  C G
Sbjct:   151 CNGSGAKPGTSPVTCGRCHGAGVINVDTQTPLGMMRRQVTCDVCHGRGKEIKYPCTTCHG 210

Query:   229 NGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLN 288
              G  +   S+ V IP GV  G  +++ G+G         GDL+V + V+      R+G  
Sbjct:   211 TGHEKQAHSVHVKIPAGVETGQQIRLAGQGEAGFNGGPYGDLYVVVSVEASDKFEREGTT 270

Query:   289 LFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDH 348
             +F  +++++ +A LG ++++ TV G  +L IP G Q G   +L+  G P +   +V GD 
Sbjct:   271 IFYNLNLNFVQAALGDTVDIPTVHGDVELVIPEGTQTGKKFRLRSKGAPSLRGGAV-GDQ 329

Query:   349 LFIVNVLIPKDISDPERALVEEIA 372
                VNV+ P  ++D ++  ++E A
Sbjct:   330 YVTVNVVTPTGLNDRQKVALKEFA 353

GO:0005515 "protein binding" evidence=IPI

TIGR_CMR|SO_1127 SO_1127 "chaperone protein DnaJ" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 359 (131.4 bits), Expect = 8.7e-51, Sum P(2) = 8.7e-51
 Identities = 99/323 (30%), Positives = 153/323 (47%)

Query:    82 AEEKFKEISSAYEVLSDDEKRSVYDRFGEAGIT------GEYDGLSNTSQGV-DPF-ELY 133
             AE  FKE+  AYE+L+D  K++ YD+FG AG+       G Y G  +      D F +++
Sbjct:    43 AEASFKEVKEAYEILTDANKKAAYDQFGHAGVDPNRGGGGGYGGAGDFGDIFGDVFGDIF 102

Query:   134 -----------SAXXXXXXXXXXXXXEAXXXXXXXXXX--XXXXLDIRCGGTGAKSSNCI 180
                        +A             E                  D+ C G+GAK     
Sbjct:   103 GGGRRGGGQRQAARGSDLRYNLELSLEEAVKGLTKELRIPTLASCDV-CDGSGAKKGTSA 161

Query:   181 QSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKV 240
              +C  C G+G V   Q    G  +    C  C G GKII D C +C G+G V+  +++ V
Sbjct:   162 TTCTTCHGQGQVQMRQ----GFFTVQQPCPTCHGRGKIIKDPCAKCHGDGRVEKTKTLSV 217

Query:   241 VIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEA 300
              IP GV  G  +++ GEG      + AGDL+V + V E     RDG NL+ ++ + +++A
Sbjct:   218 KIPAGVDTGDRIRLAGEGEAGEFGAPAGDLYVQVSVREHAIFVRDGNNLYCEVPISFSKA 277

Query:   301 ILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDI 360
              LG  +EV T++G   L+IP+  Q G   +L+  GV  + + +V GD L  V +  P ++
Sbjct:   278 ALGGEIEVPTLDGKVSLKIPAETQTGRMFRLRGKGVKSVRSHAV-GDLLCKVVMETPVNL 336

Query:   361 SDPERALVEEI-AFLKSPGKWHS 382
             ++ ++ L+ E  A L    K HS
Sbjct:   337 NERQKELLREFEATLTGESKKHS 359

GO:0009408 "response to heat" evidence=ISS

TIGR_CMR|GSU_0034 GSU_0034 "chaperone protein dnaJ" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 326 (119.8 bits), Expect = 3.7e-50, Sum P(2) = 3.7e-50
 Identities = 69/204 (33%), Positives = 110/204 (53%)

Query:   169 CGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGG 228
             CGG+GAK     + C  C G G V   Q    G  S   TC+ C G+G+++ + C  C G
Sbjct:   152 CGGSGAKPGTEPKVCPTCRGAGQVRFQQ----GFFSVSKTCNHCNGEGRVVENPCTSCRG 207

Query:   229 NGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLN 288
             +G ++  +++ V +P GV  G  +++ GEG    +    GDL+VA+ V E     R+  +
Sbjct:   208 SGMIRDTKTLSVKVPAGVETGTRLKLSGEGGQGIKGGGNGDLYVAIAVREHPIFTREDND 267

Query:   289 LFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDH 348
             +  +I V + +A LG  +EV T++G   ++IP G Q G   +L+  GVP +     RGD 
Sbjct:   268 VLCEIPVSFVQAALGCEIEVPTLDGKVSMKIPEGTQSGRIFRLRGKGVPQLQGYG-RGDQ 326

Query:   349 LFIVNVLIPKDISDPERALVEEIA 372
             L I+ V  P +++  +R L+EE A
Sbjct:   327 LVIIKVETPSNLNKRQRELLEEFA 350

GO:0009408 "response to heat" evidence=ISS

UNIPROTKB|Q47XI7 dnaJ "Chaperone protein DnaJ" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 309 (113.8 bits), Expect = 9.2e-47, Sum P(2) = 9.2e-47
 Identities = 69/215 (32%), Positives = 110/215 (51%)

Query:   169 CGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGG 228
             C G+GAK     ++C  C G G V   Q    GL +   TC  C G GK+I D C  C G
Sbjct:   150 CDGSGAKKGTSAKTCSTCHGHGQVQMRQ----GLFAVQQTCPTCSGKGKVIADKCTSCRG 205

Query:   229 NGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLN 288
              G V+  +++ V IP GV  G  +++ GEG      + AGDL+V ++V + +   RD  +
Sbjct:   206 QGRVEKTKTLSVKIPAGVDTGDRIRLSGEGEAGEHGAPAGDLYVQVNVRDHEIFVRDENH 265

Query:   289 LFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDH 348
             L+ ++ + +  A LG  +EV T+ G   L++P   Q G   +L+  GV  + + S  GD 
Sbjct:   266 LYCEVPISFVTAALGGDIEVPTLGGKVKLKVPKETQTGKMFRLRGKGVKSVRS-STTGDL 324

Query:   349 LFIVNVLIPKDISDPERALVEEIAF-LKSPGKWHS 382
             +  V +  P ++S  +  L+ ++   + S  K HS
Sbjct:   325 MCKVVIETPVNLSGDQADLLRQLEEKMASSSKKHS 359

GO:0006457 "protein folding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00017877001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (386 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00033682001	SubName- Full=Chromosome chr8 scaffold_68, whole genome shotgun sequence;; Essential component [...] (313 aa)	•		•				•		0.685
	GSVIVG00015306001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence;; Essential component [...] (298 aa)	•		•				•		0.675
	GSVIVG00005738001	SubName- Full=Chromosome chr3 scaffold_157, whole genome shotgun sequence; (626 aa)	•		•				•		0.534
	GSVIVG00022013001	SubName- Full=Chromosome chr18 scaffold_24, whole genome shotgun sequence; (667 aa)	•		•						0.533
	GSVIVG00017724001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (538 aa)	•		•						0.523
	GSVIVG00037232001	SubName- Full=Chromosome chr16 scaffold_86, whole genome shotgun sequence; (658 aa)	•		•						0.492
	GSVIVG00006687001	SubName- Full=Chromosome chr2 scaffold_176, whole genome shotgun sequence; (667 aa)	•		•						0.491
	GSVIVG00017185001	SubName- Full=Chromosome chr11 scaffold_14, whole genome shotgun sequence; (482 aa)			•						0.490
	GSVIVG00022731001	SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (655 aa)	•		•						0.488
	GSVIVG00027261001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (298 aa)	•		•				•		0.486

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	485
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	1e-119
PRK14293	374	PRK14293, PRK14293, chaperone protein DnaJ; Provis	1e-112
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	4e-99
PRK14276	380	PRK14276, PRK14276, chaperone protein DnaJ; Provis	3e-81
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	4e-81
PRK10767	371	PRK10767, PRK10767, chaperone protein DnaJ; Provis	1e-78
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	1e-78
PRK14283	378	PRK14283, PRK14283, chaperone protein DnaJ; Provis	3e-77
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	2e-76
PRK14278	378	PRK14278, PRK14278, chaperone protein DnaJ; Provis	3e-75
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	2e-74
PRK14298	377	PRK14298, PRK14298, chaperone protein DnaJ; Provis	3e-74
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	1e-73
PRK14281	397	PRK14281, PRK14281, chaperone protein DnaJ; Provis	8e-71
PRK14289	386	PRK14289, PRK14289, chaperone protein DnaJ; Provis	1e-70
PRK14284	391	PRK14284, PRK14284, chaperone protein DnaJ; Provis	4e-70
PRK14297	380	PRK14297, PRK14297, chaperone protein DnaJ; Provis	6e-68
PRK14287	371	PRK14287, PRK14287, chaperone protein DnaJ; Provis	9e-67
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	1e-66
PRK14292	371	PRK14292, PRK14292, chaperone protein DnaJ; Provis	6e-60
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	1e-59
PRK14286	372	PRK14286, PRK14286, chaperone protein DnaJ; Provis	1e-59
PRK14295	389	PRK14295, PRK14295, chaperone protein DnaJ; Provis	2e-59
PRK14296	372	PRK14296, PRK14296, chaperone protein DnaJ; Provis	2e-58
PRK14300	372	PRK14300, PRK14300, chaperone protein DnaJ; Provis	5e-56
PRK14279	392	PRK14279, PRK14279, chaperone protein DnaJ; Provis	6e-54
PRK14285	365	PRK14285, PRK14285, chaperone protein DnaJ; Provis	2e-49
PTZ00037	421	PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov	3e-48
PRK14288	369	PRK14288, PRK14288, chaperone protein DnaJ; Provis	6e-45
PRK14299	291	PRK14299, PRK14299, chaperone protein DnaJ; Provis	1e-42
cd10747	158	cd10747, DnaJ_C, C-terminal substrate binding doma	2e-36
pfam00226	63	pfam00226, DnaJ, DnaJ domain	2e-30
smart00271	60	smart00271, DnaJ, DnaJ molecular chaperone homolog	7e-26
PRK10266	306	PRK10266, PRK10266, curved DNA-binding protein Cbp	6e-24
cd06257	55	cd06257, DnaJ, DnaJ domain or J-domain	6e-24
COG2214	237	COG2214, CbpA, DnaJ-class molecular chaperone [Pos	3e-22
pfam01556	81	pfam01556, DnaJ_C, DnaJ C terminal domain	5e-20
TIGR03835	871	TIGR03835, termin_org_DnaJ, terminal organelle ass	5e-20
cd10719	65	cd10719, DnaJ_zf, Zinc finger domain of DnaJ and H	1e-19
pfam00684	65	pfam00684, DnaJ_CXXCXGXG, DnaJ central domain	2e-16
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	2e-10
PRK10266	306	PRK10266, PRK10266, curved DNA-binding protein Cbp	2e-08
COG5407	610	COG5407, SEC63, Preprotein translocase subunit Sec	2e-08
PRK09430	267	PRK09430, djlA, Dna-J like membrane chaperone prot	1e-06
COG5269	379	COG5269, ZUO1, Ribosome-associated chaperone zuoti	3e-05
PRK01356	166	PRK01356, hscB, co-chaperone HscB; Provisional	5e-04
pfam01556	81	pfam01556, DnaJ_C, DnaJ C terminal domain	6e-04
COG1076	174	COG1076, DjlA, DnaJ-domain-containing proteins 1 [	8e-04
COG1107	715	COG1107, COG1107, Archaea-specific RecJ-like exonu	0.002
COG1107	715	COG1107, COG1107, Archaea-specific RecJ-like exonu	0.002
TIGR00714	155	TIGR00714, hscB, Fe-S protein assembly co-chaperon	0.002
cd10747	158	cd10747, DnaJ_C, C-terminal substrate binding doma	0.003
COG1076	174	COG1076, DjlA, DnaJ-domain-containing proteins 1 [	0.004

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score =  353 bits (907), Expect = e-119
 Identities = 141/357 (39%), Positives = 193/357 (54%), Gaps = 35/357 (9%)

Query: 45  DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSV 104
           DYY  L V ++A+ +EIK +YRKLA+KYHPD NK   AEEKFKEI+ AYEVLSD EKR+ 
Sbjct: 1   DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQ 60

Query: 105 YDRFGEAGITGEYDGLSNTSQGVDPFELYSAFFGGSDGLFGGV-GEAGGINFNFGNKGNF 163
           YD+FG AG  G   G      G + F+    FFG    +FG   G  GG      +    
Sbjct: 61  YDQFGHAGFNG---GGGGGGGGFNGFD--IGFFGDFGDIFGDFFGGGGGSGRRRRSGPRR 115

Query: 164 GLDIR----------------------------CGGTGAKSSNCIQSCKACWGRGGVLKT 195
           G D+R                            C GTGAK     ++C  C G G V + 
Sbjct: 116 GEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQ 175

Query: 196 QRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIR 255
           Q TPFG   Q  TC  CGG+GKII + C  C G G V+ ++++ V IP GV  G  +++ 
Sbjct: 176 QGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGKGRVKERKTITVKIPAGVDTGQRLRVS 235

Query: 256 GEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMK 315
           G+GN        GDL+V + V   +   RDG +L+ ++ + +T+AILG  +EV T++G  
Sbjct: 236 GKGNAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLDGDV 295

Query: 316 DLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIA 372
            L+IP+G Q G   +L+  GVP +     RGD L  V V  PK++S  ++ L+EE+A
Sbjct: 296 KLKIPAGTQSGTVFRLKGKGVPRLRGNG-RGDLLVTVKVETPKNLSKEQKELLEELA 351

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional

 Score =  335 bits (862), Expect = e-112
 Identities = 154/361 (42%), Positives = 206/361 (57%), Gaps = 37/361 (10%)

Query: 45  DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSV 104
           DYY  L V ++A   E+K +YR+LARKYHPD+NK PGAE++FKEI+ AYEVLSD E R+ 
Sbjct: 4   DYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRAR 63

Query: 105 YDRFGEAGITGE--YDGLSNTSQGVDPFELYSAFFGGSDGLFGGVGEAGG---------- 152
           YD+FGEAG++G   +  + +     D FE    FF G    FGG G  GG          
Sbjct: 64  YDQFGEAGVSGAAGFPDMGDMGGFADIFE---TFFSG----FGGAGGQGGRRRRRGPQRG 116

Query: 153 ------INFNFGNKGNFGLD--IR---------CGGTGAKSSNCIQSCKACWGRGGVLKT 195
                 +  +F  +  FG +  IR         C G+GAK      +C  C G G V + 
Sbjct: 117 DDLRYDLKLDF-REAIFGGEKEIRIPHLETCETCRGSGAKPGTGPTTCSTCGGAGQVRRA 175

Query: 196 QRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIR 255
            RTPFG  +QVS C  C G G++I D C  CGG G  Q  + +K+ IP GV  G  +++ 
Sbjct: 176 TRTPFGSFTQVSECPTCNGTGQVIEDPCDACGGQGVKQVTKKLKINIPAGVDTGTRLRVS 235

Query: 256 GEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMK 315
           GEG+   R    GDL+V L V       RDG+N+ S+I + Y +AILG ++EV+TV+G  
Sbjct: 236 GEGDAGLRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDTVDGPV 295

Query: 316 DLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK 375
           +L IP+G QP   + L+  GVP + NP  RGDHL  V V IP  ISD ER L+E++A +K
Sbjct: 296 ELTIPAGTQPNTVLTLENKGVPRLGNPVARGDHLITVKVKIPTRISDEERELLEKLAKIK 355

Query: 376 S 376
            
Sbjct: 356 G 356

Length = 374

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score =  302 bits (775), Expect = 4e-99
 Identities = 143/364 (39%), Positives = 192/364 (52%), Gaps = 26/364 (7%)

Query: 42  AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDE 100
           A  DYY  L V ++A+ +EIK +YRKLA+KYHPD N     AEEKFKEI+ AYEVLSD E
Sbjct: 2   AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPE 61

Query: 101 KRSVYDRFGEAGI-TGEYDGLSNTSQGVDPFELYSAFFGGSDGLFGGVGEAGG------- 152
           KR+ YD+FG AG   G + G      G D  +++  FFGG  G  G              
Sbjct: 62  KRAAYDQFGHAGFKAGGFGGFGFGGFGGDFGDIFEDFFGG--GGGGRRRPNRPRRGADLR 119

Query: 153 ----INFN---FGNKGNFGLD-----IRCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPF 200
               I      FG K    +        C G+GAK     ++C  C G G V   QRT F
Sbjct: 120 YNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGF 179

Query: 201 GLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNF 260
              S   TC  C G GKII D C +C G G V+ K+S+ V IP GV +G  +++ GEG  
Sbjct: 180 --FSFQQTCPTCNGTGKIIKDPCGKCKGKGRVKKKKSISVNIPAGVDDGDRIRLSGEGEA 237

Query: 261 DRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIP 320
                 AGDL+V +HV       RDG +L+ ++ + +TEA LG  +EV T++G   L+IP
Sbjct: 238 GPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGRVKLKIP 297

Query: 321 SGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLKSPGKW 380
           +G Q G+  +L+  G+P + +   RGD    V V  PK++SD ++ L+EE A     G  
Sbjct: 298 AGTQTGEVFRLRGKGMPKLRS-GGRGDLYVRVKVETPKNLSDEQKELLEEFAKSLGEGPE 356

Query: 381 HSVS 384
            S  
Sbjct: 357 QSPG 360

Length = 371

>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional

 Score =  256 bits (656), Expect = 3e-81
 Identities = 120/359 (33%), Positives = 182/359 (50%), Gaps = 32/359 (8%)

Query: 41  AAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDE 100
              T+YY  L V ++A+  EIK +YRKL++KYHPDINK PGAEEK+KE+  AYE LSD +
Sbjct: 1   MNNTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQ 60

Query: 101 KRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYSAFFGGSDGLFGGVGEAGG--INFNFG 158
           KR+ YD++G AG  G + G +    G D        FGG + +F      GG   N N  
Sbjct: 61  KRAAYDQYGAAGANGGFGGGAGGFGGFDGS----GGFGGFEDIFSSFFGGGGARRNPNAP 116

Query: 159 NKGN--------------FGLDIR-----------CGGTGAKSSNCIQSCKACWGRGGVL 193
            +G+              FG +             C G+GAK      +C  C G G + 
Sbjct: 117 RQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHTCNGSGAKPGTSPVTCGKCHGSGVIT 176

Query: 194 KTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQ 253
              +TP G++ +  TC  C G GK I + C+ C G G  +   ++ V IP GV  G  ++
Sbjct: 177 VDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCHGTGHEKQAHTVSVKIPAGVETGQQIR 236

Query: 254 IRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEG 313
           ++G+G         GDL+V   V+  +   RDG  ++  + + + +A LG ++EV TV G
Sbjct: 237 LQGQGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVPTVHG 296

Query: 314 MKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIA 372
             +L+IP+G Q G   +L+  G P +      GD    VN++ P  ++D ++  ++  A
Sbjct: 297 DVELKIPAGTQTGKKFRLRGKGAPKLRGGGN-GDQHVTVNIVTPTKLNDAQKEALKAFA 354

Length = 380

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score =  256 bits (656), Expect = 4e-81
 Identities = 135/377 (35%), Positives = 193/377 (51%), Gaps = 52/377 (13%)

Query: 41  AAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPG---AEEKFKEISSAYEVLS 97
           AA  DYY  L V +NAT +EIK +YR+LA+KYHPD+N  PG   AE+KFKEI+ AYE+LS
Sbjct: 2   AAKKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLN--PGDKEAEQKFKEINEAYEILS 59

Query: 98  DDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYSAFFGG-SDGLFGGVGEAGGINFN 156
           D +KR+ YD+FG A       G     QG         F GG  D  FGG G+     F 
Sbjct: 60  DPQKRAQYDQFGHAAFDPGGFGQGGFGQG--------GFGGGGFDFDFGGFGDIFEDIFG 111

Query: 157 --FGN----------KGN--------------FGLD-----------IRCGGTGAKSSNC 179
             FG           KG               FG +             C G+GAK  + 
Sbjct: 112 DFFGTGRRRAETGPQKGADIRYDLELTFEEAAFGTEKEIEVERFEKCDVCKGSGAKPGSK 171

Query: 180 IQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMK 239
             +C  C G G V   Q TPFG I  + TC +C G+GKII D C +CGG G ++ +R +K
Sbjct: 172 PVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCGGTGRIRRRRKIK 231

Query: 240 VVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTE 299
           V IP G+ +G  + +RGEG    +    GDL++ + V       R+G N++ ++ + +T+
Sbjct: 232 VNIPAGIDDGQMITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTD 291

Query: 300 AILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKD 359
           A LG  +E+ T++G     IP G Q G   +L+  G+P +     RGD +  V + +PK 
Sbjct: 292 AALGGEIEIPTLDGKVKFTIPEGTQTGTKFRLRGKGIPHLRG-RGRGDQIVKVYIEVPKK 350

Query: 360 ISDPERALVEEIAFLKS 376
           +++ ++ L+ E   L  
Sbjct: 351 LTEKQKELLREFEKLSG 367

Length = 386

>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional

 Score =  249 bits (639), Expect = 1e-78
 Identities = 134/370 (36%), Positives = 182/370 (49%), Gaps = 50/370 (13%)

Query: 45  DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRS 103
           DYY  L V +NA+  EIK +YRKLA KYHPD N     AEEKFKEI  AYEVLSD +KR+
Sbjct: 5   DYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRA 64

Query: 104 VYDRFGEAGITGEYDGLSNTSQGVDPF-ELYSAFFGGSDGLFGGVGEAGGINFNFGNKGN 162
            YD++G A    E  G      G   F +++   FG    +FGG    G        +  
Sbjct: 65  AYDQYGHAAF--EQGGGGGGFGGGGGFGDIFGDIFGD---IFGGGRGGGR------QRAR 113

Query: 163 FGLDIR----------------------------CGGTGAKSSNCIQSCKACWGRGGVLK 194
            G D+R                            C G+GAK     ++C  C G G V  
Sbjct: 114 RGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRM 173

Query: 195 TQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQI 254
            Q    G  +   TC  C G GKII D C++C G G V+ ++++ V IP GV  G   +I
Sbjct: 174 QQ----GFFTVQQTCPTCHGRGKIIKDPCKKCHGQGRVEKEKTLSVKIPAGVDTG--DRI 227

Query: 255 R--GEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVE 312
           R  GEG    R   AGDL+V +HV E     RDG +L+ ++ + +T A LG  +EV T++
Sbjct: 228 RLSGEGEAGERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLD 287

Query: 313 GMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIA 372
           G   L+IP G Q G   +L+  GV  + +   RGD    V V  P +++  ++ L+EE  
Sbjct: 288 GRVKLKIPEGTQTGKLFRLRGKGVKSVRS-GARGDLYCQVVVETPVNLTKRQKELLEEFE 346

Query: 373 FLKSPGKWHS 382
                G+ HS
Sbjct: 347 ESFESGEKHS 356

Length = 371

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score =  249 bits (638), Expect = 1e-78
 Identities = 128/356 (35%), Positives = 183/356 (51%), Gaps = 55/356 (15%)

Query: 45  DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSV 104
           DYY  L V +NAT +EIK +YR+LARKYHPD NK+P AEEKFKEI+ AY+VLSD EKR +
Sbjct: 4   DYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKL 63

Query: 105 YDRFGEAGITGEYDGLSNTSQGVDPFELYSAFFGGS--------DGLFGGVGEAGGINFN 156
           YD+FG A  +G         Q     E +S F GG+          +FG     G     
Sbjct: 64  YDQFGHAAFSGSG-------QQQQGQEGFSDFGGGNIEDILEDVFDIFGFGDIFGRRRAT 116

Query: 157 FGNKGNF-----GLDI----------------------------RCGGTGAKSSNCIQSC 183
              +  +     G DI                             CGGTG    +  + C
Sbjct: 117 RERRKTYQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCEACGGTGYDPGSGEKVC 176

Query: 184 KACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIP 243
             C G G +   QR  F  ISQ  TC  CGG+G ++ + C +C G G V  K ++KV IP
Sbjct: 177 PTCGGSGEI--YQRGGFFRISQ--TCPTCGGEG-VLREPCSKCNGRGLVIKKETIKVRIP 231

Query: 244 PGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILG 303
           PGV NG+ +++ G+G+  R     GDL++ + V       R G NL+  +++   EA+LG
Sbjct: 232 PGVDNGSKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLG 291

Query: 304 TSMEVETVEGMKD-LRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPK 358
           T +EV  ++G K+ ++IP G + GD +++   G+P +   S  GD +  V++ +PK
Sbjct: 292 TELEVPLLDGKKEKVKIPPGTKEGDKIRVPGKGMPRLKG-SGYGDLVVRVHIDVPK 346

Length = 382

>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional

 Score =  246 bits (629), Expect = 3e-77
 Identities = 126/358 (35%), Positives = 192/358 (53%), Gaps = 31/358 (8%)

Query: 41  AAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDE 100
           A   DYY  L V +NA  +EIK +YRKLARKYHPD+++  GAEEKFKEIS AY VLSDDE
Sbjct: 2   AEKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDE 61

Query: 101 KRSVYDRFGEAGITGEYDGLSNTS--QGVDPFELYSAFFGGSDGLFGGVGEAGGINFNFG 158
           KR  YD+FG AG+    DG S       ++  +++  F  G   +F   G  GG      
Sbjct: 62  KRQRYDQFGHAGM----DGFSQEDIFNNINFEDIFQGFGFGIGNIFDMFGFGGGSRHGPQ 117

Query: 159 NKGNFG-----------------LDIR-------CGGTGAKSSNCIQSCKACWGRGGVLK 194
              +                   + +R       C G+ A+  + +++C  C G G V +
Sbjct: 118 RGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQ 177

Query: 195 TQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQI 254
            + T  G +  V+TC  C G+GKI+   C  C G G V+  +++ V IP GV  G+ +++
Sbjct: 178 VRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCHGKGVVRETKTISVKIPAGVETGSRLRV 237

Query: 255 RGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGM 314
            GEG    R    GDL+V + V   +   R+G NL+ +  + + +A LG +++V T++G 
Sbjct: 238 SGEGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVPTIDGP 297

Query: 315 KDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIA 372
            +L+IP+G Q G T +L+  G+P +   S +G+    V V++PK +S  ++ L+ E A
Sbjct: 298 VELKIPAGTQSGTTFRLKGHGMPSLRW-SGKGNLYVKVKVVVPKKLSPKQKELLREFA 354

Length = 378

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score =  243 bits (623), Expect = 2e-76
 Identities = 132/353 (37%), Positives = 189/353 (53%), Gaps = 31/353 (8%)

Query: 45  DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSV 104
           DYY  L V ++A+  EIK +YRKL++KYHPDINK  GA+EKFKEIS AYEVLSDD+KR+ 
Sbjct: 5   DYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQ 64

Query: 105 YDRFGEAGITGEYDGLSNTSQ---GVDPFE-LYSAFFGGSDGLFGG------VGEAGG-- 152
           YD+FG AG    + G         G   FE ++S+FFGG     GG          G   
Sbjct: 65  YDQFGHAGPNQGFGGGGFGGGDFGGGFGFEDIFSSFFGG-----GGRRRDPNAPRQGADL 119

Query: 153 -----INFN---FGNKGNFGLDIR-----CGGTGAKSSNCIQSCKACWGRGGVLKTQRTP 199
                + F    FG +    +        C G+GAK     ++C  C G G V   Q TP
Sbjct: 120 QYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTP 179

Query: 200 FGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGN 259
           FG +    TC  C G G+ I + C  C G G+V+ ++ + V IP GV NG  +++ GEG 
Sbjct: 180 FGRVVNRQTCPHCNGTGQEIKEKCPTCHGKGKVRKRKKINVKIPAGVDNGQQIRVSGEGE 239

Query: 260 FDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRI 319
                  AGDL+V   V   +   RDG +++ ++ + + +A LG  +EV T+ G   L+I
Sbjct: 240 PGVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVPTLHGKVKLKI 299

Query: 320 PSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIA 372
           P+G Q G   +L+  GVP++     +GD   +V V+ P  ++D ++ L+ E A
Sbjct: 300 PAGTQTGTQFRLKGKGVPNVRGYG-QGDQYVVVRVVTPTKLTDRQKELLREFA 351

Length = 376

>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional

 Score =  241 bits (616), Expect = 3e-75
 Identities = 126/365 (34%), Positives = 175/365 (47%), Gaps = 47/365 (12%)

Query: 44  TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRS 103
            DYY  L V +NA+  EIK +YRKLAR+ HPD+N    A+EKFKEIS AYEVLSD EKR 
Sbjct: 3   RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRR 62

Query: 104 VYDRFGE---------AGITGEYDGLSNTSQGVDPFELYSAFFGGSDGLFGGVG------ 148
           + D  G+          G  G + GL       D FE   AFFGG     G  G      
Sbjct: 63  IVDLGGDPLESAGGGGGGFGGGFGGLG------DVFE---AFFGGGAASRGPRGRVRPGS 113

Query: 149 -----------EAGGINFNFGNKGNFGLDI-----RCGGTGAKSSNCIQSCKACWGRGGV 192
                      E        G      +D      RC G G    +   +C  C GRG V
Sbjct: 114 DSLLRMRLDLEECA-----TGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEV 168

Query: 193 LKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATM 252
              QR+  G +     C  C G G++I D C  C G+G V+++R + V IP GV +G  +
Sbjct: 169 QTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHECAGDGRVRARREITVKIPAGVGDGMRI 228

Query: 253 QIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETV- 311
           ++  +G        AGDL+V +H        RDG +L   +SV   +A LGT++ VE + 
Sbjct: 229 RLAAQGEVGPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAIL 288

Query: 312 EGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEI 371
           +G  ++ IP G QPG  + L+  G+P + +   RGD    V V++P  +   +  L+ E+
Sbjct: 289 DGPSEITIPPGTQPGSVITLRGRGMPHLRS-GGRGDLHAHVEVVVPTRLDHEDIELLREL 347

Query: 372 AFLKS 376
             L+ 
Sbjct: 348 KALRG 352

Length = 378

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score =  238 bits (609), Expect = 2e-74
 Identities = 125/361 (34%), Positives = 185/361 (51%), Gaps = 31/361 (8%)

Query: 45  DYYSTLNVRQNATLQEIKTSYRKLARKYHPDIN--KSPGAEEKFKEISSAYEVLSDDEKR 102
           DYY  L V +NAT +EIK +Y++L +++HPD +      AE+KFKEI  AYEVLSD +KR
Sbjct: 5   DYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKR 64

Query: 103 SVYDRFGEAGITGEYDGLSNTSQGV-DPFELYSAFFGGS--DGLFGGVGEAG-------- 151
           ++YDRFG  G    Y    +      D F+ +   F     D  FG              
Sbjct: 65  AMYDRFGYVGEQPPYQETESGGGFFEDIFKDFENIFNRDIFDIFFGERRTQEEQREYARR 124

Query: 152 GINFNFGNKGNF-----GLDI-----------RCGGTGAKSSNCIQSCKACWGRGGVLKT 195
           G +  +  +        G +I            CGGTG +  +   +C  C G G + + 
Sbjct: 125 GEDIRYEIEVTLSDLINGAEIPVEYDRYETCPHCGGTGVEPGSGYVTCPKCHGTGRIREE 184

Query: 196 QRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIR 255
           +R+ FG+     TC +CGG GKI  ++C  CGG+G ++ +    V IP GV +G  ++I 
Sbjct: 185 RRSFFGVFVSERTCERCGGTGKIPGEYCHECGGSGRIRRRVRTTVKIPAGVEDGTVLRIT 244

Query: 256 GEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEG-M 314
           G GN        GDL+V + V       R G +L   +++DY +AILGT++EV   EG  
Sbjct: 245 GGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPLPEGGT 304

Query: 315 KDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFL 374
             L+IP G QP    +L+  G+P++     RGD +  V+V IPK +S  ER L++E+A  
Sbjct: 305 TMLKIPPGTQPETVFRLKGKGLPNMRY-GRRGDLIVNVHVEIPKRLSREERKLLKELAKK 363

Query: 375 K 375
           +
Sbjct: 364 R 364

Length = 369

>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional

 Score =  238 bits (608), Expect = 3e-74
 Identities = 129/354 (36%), Positives = 183/354 (51%), Gaps = 32/354 (9%)

Query: 45  DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSV 104
           DYY  L + ++A++++IK +YRKLA KYHPD NK P AEEKFKEIS AY VLSD EKR+ 
Sbjct: 6   DYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQ 65

Query: 105 YDRFGEAGITGEY---DGLSNTSQGVDPFELYSAFFGGSDGLFGGVGEAG---------- 151
           YDRFG AGI  +Y   D       G    +++  FFGG     G  G  G          
Sbjct: 66  YDRFGHAGIDNQYSAEDIFRGADFG-GFGDIFEMFFGGG----GRRGRMGPRRGSDLRYD 120

Query: 152 -GINFN---FGNKGNFGLDI-------RCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPF 200
             I      FG + +  +D+        C GTGAK     + C  C G G V  T+ TP 
Sbjct: 121 LYITLEEAAFGVRKD--IDVPRAERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPL 178

Query: 201 GLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNF 260
           G     +TCS C G G++I   C  C G G+V+  R + V +P G  +G  +++ GEG  
Sbjct: 179 GQFVTTTTCSTCHGRGQVIESPCPVCSGTGKVRKTRKITVNVPAGADSGLRLKLSGEGEA 238

Query: 261 DRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIP 320
               + +GDL++ LHV E     R G ++ S+I + +T+A LG  + V T+ G   + IP
Sbjct: 239 GSPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVPTLYGKVKMNIP 298

Query: 321 SGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFL 374
            G Q     +L+  G+P ++    +GD L  V V  P  ++  ++ L+ E   L
Sbjct: 299 PGTQTHSVFRLKDKGMPRLHG-HGKGDQLVKVIVKTPTKLTQEQKELLREFDEL 351

Length = 377

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score =  236 bits (604), Expect = 1e-73
 Identities = 129/362 (35%), Positives = 194/362 (53%), Gaps = 44/362 (12%)

Query: 45  DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPG---AEEKFKEISSAYEVLSDDEK 101
           DYY  L V ++A+ +EIK SYRKLA KYHPD  ++PG   AEE FKE + AYEVLSD +K
Sbjct: 5   DYYEILGVTRDASEEEIKKSYRKLAMKYHPD--RNPGDKEAEELFKEAAEAYEVLSDPKK 62

Query: 102 RSVYDRFGEAGITGEYDGLSNTS-QGVDPFE-LYSAFFGGSDGLFGGVGEAGGINFNFGN 159
           R +YD++G       ++GLS T   G   F+ ++S+F    +  FG  G   G +     
Sbjct: 63  RGIYDQYG-------HEGLSGTGFSGFSGFDDIFSSFGDIFEDFFGFGGGRRGRSRTAVR 115

Query: 160 KGN--------------FG----LDIR-------CGGTGAKSSNCIQSCKACWGRGGVLK 194
            G               FG    + I+       C G+G +      +C  C G G V +
Sbjct: 116 AGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGSGCEPGTSPTTCPQCGGSGQVTQ 175

Query: 195 TQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQI 254
           +Q    G  S  +TC +C G GK+I+  C+ C G G V+  ++++V IP GV  G+ +++
Sbjct: 176 SQ----GFFSIRTTCPRCRGMGKVIVSPCKTCHGQGRVRVSKTVQVKIPAGVDTGSRLRL 231

Query: 255 RGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGM 314
           RGEG    R    GDL+V L V+  +   RDG ++  K+ + + +A LG  +EV T+EG 
Sbjct: 232 RGEGEAGVRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGE 291

Query: 315 KDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFL 374
           ++L+IP G QPGD  + +  G+P +     RGD +  V V +P  ++  +  L+ E A L
Sbjct: 292 RELKIPKGTQPGDIFRFKGKGIPSLRGGG-RGDQIIEVEVKVPTRLTKKQEELLTEFARL 350

Query: 375 KS 376
           +S
Sbjct: 351 ES 352

Length = 366

>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional

 Score =  230 bits (587), Expect = 8e-71
 Identities = 137/411 (33%), Positives = 203/411 (49%), Gaps = 75/411 (18%)

Query: 45  DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPG---AEEKFKEISSAYEVLSDDEK 101
           DYY  L V ++A   EIK +YRKLA KYHPD  K+P    AEE FKE++ AYEVLS+D+K
Sbjct: 4   DYYEVLGVSRSADKDEIKKAYRKLALKYHPD--KNPDNKEAEEHFKEVNEAYEVLSNDDK 61

Query: 102 RSVYDRFGEAGITGEYDGLSNTSQGVDPF--------ELYSAFFGGSDGLFGGVGEAGGI 153
           R  YD+FG AG+     G S  S G   +        +++SAF   +D   GG    GG 
Sbjct: 62  RRRYDQFGHAGV-----GSSAASGGGPGYGGGGGDFNDIFSAF---NDMFGGGARRGGGS 113

Query: 154 NFNFGNKGNFG----------------LDIR--------------------------CGG 171
            F F +   FG                L IR                          C G
Sbjct: 114 PFGFEDV--FGGGGRRRRASAGIPGTDLKIRLKLTLEEIAKGVEKTLKIKKQVPCKECNG 171

Query: 172 TGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGE 231
           TG+K+    ++C  C G G V +  +T FG    ++ C  CGG+G+++ D C  C G G 
Sbjct: 172 TGSKTGA-TETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACYGEGI 230

Query: 232 VQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFS 291
            Q + ++KV +P GV +G  + +RG+GN   R    GDL V +     +   R+G ++  
Sbjct: 231 KQGEVTVKVTVPAGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIY 290

Query: 292 KISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFI 351
            ++V Y + +LGT +EV T++G   L IP+G QP   +++   G+  +     RGD    
Sbjct: 291 NLAVSYPDLVLGTKVEVPTLDGAVKLTIPAGTQPETMLRIPGKGIGHLRGSG-RGDQYVR 349

Query: 352 VNVLIPKDISDPERALVEEIAFLKSPGKWHSVSTNSTEAAQRKS--AKVRD 400
           VNV +PK++S  ++ L++E+   KS      +S N+    + KS   K +D
Sbjct: 350 VNVFVPKEVSHQDKELLKELK--KSSH----ISPNAHNDKEEKSFFEKAKD 394

Length = 397

>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional

 Score =  229 bits (585), Expect = 1e-70
 Identities = 133/365 (36%), Positives = 192/365 (52%), Gaps = 39/365 (10%)

Query: 41  AAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPG---AEEKFKEISSAYEVLS 97
           A   DYY  L V + AT+ EIK +YRK A +YHPD  K+PG   AEEKFKE + AY+VLS
Sbjct: 2   AEKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPD--KNPGDKEAEEKFKEAAEAYDVLS 59

Query: 98  DDEKRSVYDRFGEAGITGEYDGLSNTSQGV---DPFELYSAFFGGSDGLFGGVGEAGGIN 154
           D +KRS YD+FG AG+ G   G   + +G+   D F ++   FGG  G FGG G  GG  
Sbjct: 60  DPDKRSRYDQFGHAGVGGAAGGGGFSGEGMSMEDIFSMFGDIFGGHGGGFGGFGGFGG-- 117

Query: 155 FNFGNKGNFGLDIR----------------------------CGGTGAKSSNCIQSCKAC 186
                +   G D+R                            C GTGA+ +N  ++C  C
Sbjct: 118 GGSQQRVFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHCHGTGAEGNNGSETCPTC 177

Query: 187 WGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGV 246
            G G V + Q T  G +   STC  C G+GKII   C++CGG G V  +  + V IP GV
Sbjct: 178 KGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCGGEGIVYGEEVITVKIPAGV 237

Query: 247 SNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSM 306
           + G  + + G+GN  +   + GDL V +  +    + RD  +L   + +    A LG ++
Sbjct: 238 AEGMQLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAV 297

Query: 307 EVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERA 366
           EV T++G   ++I +G QPG  ++L+  G+P +N     GD L  V+V IP+ +S  E+ 
Sbjct: 298 EVPTIDGKAKVKIEAGTQPGKVLRLRNKGLPSVNGYG-TGDLLVNVSVYIPETLSKEEKQ 356

Query: 367 LVEEI 371
            +E++
Sbjct: 357 TLEKM 361

Length = 386

>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional

 Score =  228 bits (582), Expect = 4e-70
 Identities = 135/377 (35%), Positives = 203/377 (53%), Gaps = 51/377 (13%)

Query: 44  TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPG---AEEKFKEISSAYEVLSDDE 100
            DYY+ L V + A+ +EIK +YRKLA KYHPD  K+PG   AE++FKE+S AYEVLSD +
Sbjct: 1   MDYYTILGVSKTASPEEIKKAYRKLAVKYHPD--KNPGDAEAEKRFKEVSEAYEVLSDAQ 58

Query: 101 KRSVYDRFGE------AGITGEYDGLSNTSQGVDPFE-LYSAFFGGS----DGLFGGVGE 149
           KR  YDR+G+      AG  G   G+ N    +  F   +   FGG     +GLFGG+GE
Sbjct: 59  KRESYDRYGKDGPFAGAGGFGG-AGMGNMEDALRTFMGAFGGEFGGGGSFFEGLFGGLGE 117

Query: 150 AGG-----------------INFNF--GNKG--------NFGLDIRCGGTGAKSSNCIQS 182
           A G                 I  +F    KG         +     C G+GA SS  I+ 
Sbjct: 118 AFGMRGGPAGARQGASKKVHITLSFEEAAKGVEKELLVSGYKSCDACSGSGANSSQGIKV 177

Query: 183 CKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVI 242
           C  C G G V++++    G  S  STC +CGG+G++I D C  C G G ++ KRS+ V I
Sbjct: 178 CDRCKGSGQVVQSR----GFFSMASTCPECGGEGRVITDPCSVCRGQGRIKDKRSVHVHI 233

Query: 243 PPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAIL 302
           P GV +G  +++ G G+  +  + AGDL+V + V+      R G +L  ++ + + +A L
Sbjct: 234 PAGVDSGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAAL 293

Query: 303 GTSMEVETV--EGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDI 360
           G   E+ T+  EG   L IP G+Q G  +K++  G P+++    RGD L  ++V  P+++
Sbjct: 294 GMKKEIPTLLKEGTCRLTIPEGIQSGTILKVRGQGFPNVHGKG-RGDLLVRISVETPQNL 352

Query: 361 SDPERALVEEIAFLKSP 377
           S+ ++ L+ + A  +  
Sbjct: 353 SEEQKELLRQFAATEKA 369

Length = 391

>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional

 Score =  221 bits (566), Expect = 6e-68
 Identities = 127/367 (34%), Positives = 191/367 (52%), Gaps = 36/367 (9%)

Query: 42  AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDE 100
           A  DYY  L + + A+  EIK ++RKLA KYHPD NK +  AEEKFKEI+ AY+VLSD +
Sbjct: 2   ASKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQ 61

Query: 101 KRSVYDRFGEAGITGEYDGLSNTSQGVDPFEL------YSAFFGGSDGLFGGVG------ 148
           K++ YD+FG A   G     S    G D  ++      + +FFGG    FG         
Sbjct: 62  KKAQYDQFGTADFNGAGGFGSGGFGGFDFSDMGGFGDIFDSFFGGG---FGSSSRRRNGP 118

Query: 149 EAGG-----INFNFGNKGNFGLDIR-----------CGGTGAKSSNCIQSCKACWGRGGV 192
           + G      IN  F  +  FG++             C GTGAK     ++C  C G G +
Sbjct: 119 QRGADIEYTINLTF-EEAVFGVEKEISVTRNENCETCNGTGAKPGTSPKTCDKCGGTGQI 177

Query: 193 LKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATM 252
              + TP G     +TC KCGG GK+I D C +C G G+V+  R +KV +P GV  G  +
Sbjct: 178 RVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCHGKGKVRKNRKIKVNVPAGVDTGNVI 237

Query: 253 QIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVE 312
            +RG+G   +     GDL++ + V   +   R G +++    + + +A LGT ++V TV+
Sbjct: 238 PLRGQGEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTVD 297

Query: 313 GMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIA 372
           G     +P+G QPG   +L+  GVP +N+   RG+    V V IPK ++  ++  +    
Sbjct: 298 GEVKYEVPAGTQPGTVFRLKGKGVPRVNSTG-RGNQYVTVIVDIPKKLNSKQKEAL--TM 354

Query: 373 FLKSPGK 379
           F+++ G+
Sbjct: 355 FMEASGE 361

Length = 380

>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional

 Score =  218 bits (557), Expect = 9e-67
 Identities = 118/352 (33%), Positives = 187/352 (53%), Gaps = 34/352 (9%)

Query: 45  DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSV 104
           DYY  L V +NA++ E+K +YRKLARKYHPD+NK+P AE+KFKE+  AY+ LSD +K++ 
Sbjct: 5   DYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAH 64

Query: 105 YDRFGEA--------GITGEYDGLSNTSQGVDPFELYSAFFGGSDGLFGGVGEAGGINFN 156
           YD+FG          G  G++ G S         +++  FFGG  G         G +  
Sbjct: 65  YDQFGHTDPNQGFGGGGAGDFGGFS---------DIFDMFFGGGGGRRNPNAPRQGADLQ 115

Query: 157 FG-----NKGNFGLDIR-----------CGGTGAKSSNCIQSCKACWGRGGVLKTQRTPF 200
           +       +  FG +             C G+GAK     ++C  C G G +   Q TPF
Sbjct: 116 YTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPF 175

Query: 201 GLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNF 260
           G +     C  C G GKII   C  CGG G+V+ ++ + V +P G+ +G  +++ G+G  
Sbjct: 176 GRVVNRRVCHHCEGTGKIIKQKCATCGGKGKVRKRKKINVKVPAGIDHGQQLRVSGQGEA 235

Query: 261 DRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIP 320
                  GDL+V  +V   +   RDG +++ ++ + + +  LG  +EV T+ G   L+IP
Sbjct: 236 GVNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTLNGKVKLKIP 295

Query: 321 SGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIA 372
           +G Q G + +L+  GVP+++    +GD    V V+ PK++++ E+ L+ E A
Sbjct: 296 AGTQTGTSFRLRGKGVPNVHGRG-QGDQHVQVRVVTPKNLTEKEKELMREFA 346

Length = 371

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score =  218 bits (557), Expect = 1e-66
 Identities = 127/354 (35%), Positives = 184/354 (51%), Gaps = 32/354 (9%)

Query: 45  DYYSTLNVRQNATLQEIKTSYRKLARKYHPDIN-KSPGAEEKFKEISSAYEVLSDDEKRS 103
           DYY  L V ++A+  EIK +YRKLA +YHPD N  +P AE+KFKE + AYEVL D EKR+
Sbjct: 5   DYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRA 64

Query: 104 VYDRFGEAGITGEYDGLSNTSQGVDPFELYSAFFGGSDGLFGGVGEAGG----------- 152
            YDRFG AG+ G   G    S   D F  +S  FG   G F G G   G           
Sbjct: 65  RYDRFGHAGVNG-NGGFGGFSSAEDIFSHFSDIFGDLFG-FSGGGSRRGPRPQAGSDLRY 122

Query: 153 ---INFNFGNKGNFGLDIR---------CGGTGAKSSNCIQSCKACWGRGGVLKTQRTPF 200
              ++F    KG+  + +R         CGG+GA      ++C+ C G G V ++Q    
Sbjct: 123 NLTVSFRQAAKGD-EVTLRIPKNVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQ---- 177

Query: 201 GLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNF 260
           G       C  C G+G++I   C +C G+G VQ  R +KV IP GV  G+ +++RGEG  
Sbjct: 178 GFFQIAVPCPVCRGEGRVITHPCPKCKGSGIVQQTRELKVRIPAGVDTGSRLRLRGEGEP 237

Query: 261 DRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIP 320
                  GDL+V + V++ +   R G +L     + + +A LG  +EV T++    L IP
Sbjct: 238 GVHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDDPVTLDIP 297

Query: 321 SGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFL 374
            G Q G+  +L+  G+P + + S +GD L  V+V+ P  ++  +  L+ E   L
Sbjct: 298 KGTQSGEVFRLRGKGLPYLGS-SQKGDLLVEVSVVTPTKLTKRQEELLREFEAL 350

Length = 373

>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional

 Score =  200 bits (511), Expect = 6e-60
 Identities = 114/348 (32%), Positives = 166/348 (47%), Gaps = 24/348 (6%)

Query: 45  DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSV 104
           DYY  L V + A+  EIK++YRKLA KYHPD NK  GA EKF +I+ AY VLSD EKR+ 
Sbjct: 3   DYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAH 62

Query: 105 YDRFGEAGITGEYDGLSNTSQGVDPFELYSAFFGGSDGLFGGVGEAGG-----------I 153
           YDRFG A   G   G      G DP +++   FGG+ G  GG G  G            I
Sbjct: 63  YDRFGTAPGAGMPGGDPFGGMGFDPMDIFEQLFGGA-GFGGGRGRRGPARGDDLETEARI 121

Query: 154 NFNFGNKG--------NFGLDIRCGGTGAK-SSNCIQSCKACWGRGGVLKTQRTPFGLIS 204
                  G               C G+  +      ++C  C G G V    RT FG++ 
Sbjct: 122 TLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVE 181

Query: 205 QVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRR 264
               C  C G+G+II D C  C G G      ++KV +P G+  G  +++ G GN     
Sbjct: 182 TQQPCPTCRGEGQIITDPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRVAGMGN--EGP 239

Query: 265 SLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQ 324
              GDL+V + ++    + R+  +L  +  + + +A LG  + V T++G + + +  G Q
Sbjct: 240 GGNGDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDGPQVIEVKPGTQ 299

Query: 325 PGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIA 372
            GD  +L+  G+P +      GD +    + +PK +S   R  +E  A
Sbjct: 300 HGDLHRLRGQGMPRLQGAGT-GDLIVEYEIAVPKQLSPEAREALEAYA 346

Length = 371

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score =  200 bits (509), Expect = 1e-59
 Identities = 121/367 (32%), Positives = 185/367 (50%), Gaps = 57/367 (15%)

Query: 45  DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPG----AEEKFKEISSAYEVLSDDE 100
           DYY  L V +NA+ ++IK ++R+LA+K+HPD++  PG    AEEKFKEIS AYEVLSD +
Sbjct: 4   DYYKILGVDRNASQEDIKKAFRELAKKWHPDLH--PGNKAEAEEKFKEISEAYEVLSDPQ 61

Query: 101 KRSVYDR-----FGEAGITGEYDGLSNTSQGVDPFELYSAFFGGS--DGLFGGVGEAGGI 153
           KR  YD+     FG  G    +D  ++ S   D  ++++  FGG+     F G G     
Sbjct: 62  KRRQYDQTGTVDFGAGGSNFNWDNFTHFS---DINDIFNQIFGGNFGSDFFSGFG----- 113

Query: 154 NFNFGNKGNFGLDI----------------------------RCGGTGAKSSNCIQSCKA 185
             N  +  N  LDI                             C GTGAK+   I +C  
Sbjct: 114 --NQQSTRNIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSGTGAKNGKLI-TCPT 170

Query: 186 CWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPG 245
           C G G     +   F  +  V+TC  CGG G+I  + C RC G G V     + V IP G
Sbjct: 171 CHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPEEKCPRCNGTGTVVVNEDISVKIPKG 230

Query: 246 VSNGATMQIRGEGN-FDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGT 304
            ++   ++++G+G  +  R    GDL+V L V+    I R   +L+    +++ +A LG 
Sbjct: 231 ATDNLRLRVKGKGQSYGGR---TGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGG 287

Query: 305 SMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPE 364
            +E++      +L+IP G QPG+ +K++  G+P +N     GD L  +NV +PK ++  +
Sbjct: 288 EIEIKLFREKYNLKIPEGTQPGEVLKIKGAGMPHLNGHG-SGDLLVRINVEVPKRLTSKQ 346

Query: 365 RALVEEI 371
           + L+ E 
Sbjct: 347 KELIREF 353

Length = 365

>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional

 Score =  199 bits (508), Expect = 1e-59
 Identities = 122/358 (34%), Positives = 181/358 (50%), Gaps = 39/358 (10%)

Query: 46  YYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSV 104
           YY  L V ++A  +EIK++YRKLA KYHPD NK +  +EEKFKE + AYE+L D +KR  
Sbjct: 6   YYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQA 65

Query: 105 YDRFGEAGITGEYDGLSNTSQGV---------DPFELYSAFFGGSDGLFGGVGEAGGINF 155
           YD+FG+AG+     G     QG          D  +++  FFGG  G   G G   G   
Sbjct: 66  YDQFGKAGVNA---GAGGFGQGAYTDFSDIFGDFGDIFGDFFGGGRGGGSGGGRRSGPQR 122

Query: 156 NFGNKGNFGLDIR--------------------CGGTGAKSSNCIQSCKACWGRGGVLKT 195
               + N  + +                     C G+GA   +   +C  C G G + +T
Sbjct: 123 GSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCNGSGASKGSSPTTCPDCGGSGQIRRT 182

Query: 196 QRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIR 255
           Q    G  S  +TC  C G G +I + C+ CGG G  + +R++ + IPPGV  G+ +++ 
Sbjct: 183 Q----GFFSVATTCPTCRGKGTVISNPCKTCGGQGLQEKRRTINIKIPPGVETGSRLKVS 238

Query: 256 GEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMK 315
           GEG         GDL+V  H+ + +   R G +L     +   +AILG  +EV T++G K
Sbjct: 239 GEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKK 298

Query: 316 -DLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIA 372
             ++IP G + G   +L+  G+P +     +GD   IV + IPK I+  +R L+EE A
Sbjct: 299 AKMKIPEGTESGQVFRLKGHGMPYLGAYG-KGDQHVIVKIEIPKKITRRQRELIEEFA 355

Length = 372

>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional

 Score =  200 bits (510), Expect = 2e-59
 Identities = 135/368 (36%), Positives = 176/368 (47%), Gaps = 53/368 (14%)

Query: 45  DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRS 103
           DYY  L V ++AT  EIK +YRKLAR+YHPD NK    AEE+FKEIS AY+VLSD++KR 
Sbjct: 10  DYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRK 69

Query: 104 VYDR----FGEAGITGEYDGLSNTSQGVDPFELYSAFFGGSDGLFGGVGEAGGINFNFG- 158
            YD     FG  G      G      G   F+L   F GG+ G  GG G  GG+   FG 
Sbjct: 70  EYDEARSLFGNGGFR---PGPGGGGGGGFNFDLGDLFGGGAQG-GGGAGGGGGLGDVFGG 125

Query: 159 --NKGNF------GLDIR----------------------------CGGTGAKSSNCIQS 182
             N+G        G D+                             C GTGAK+    + 
Sbjct: 126 LFNRGGRRTQPRRGADVESEVTLSFTEAIDGATVPLRLTSQAPCPACSGTGAKNGTTPRV 185

Query: 183 CKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVI 242
           C  C G G V +      G  S    C  C G G I  D C  C G+G  +S R+M+V I
Sbjct: 186 CPTCSGTGQVSRNS----GGFSLSEPCPDCKGRGLIADDPCLVCKGSGRAKSSRTMQVRI 241

Query: 243 PPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAIL 302
           P GVS+G  +++RG+G    R   AGDL+V +HVD      R G NL   + V + EA L
Sbjct: 242 PAGVSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAAL 301

Query: 303 GTSMEVETVEGMK-DLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDIS 361
           G  + V T+ G    +++P G   G  ++++  G         RGD L  V V +PKD+S
Sbjct: 302 GAEVRVPTLGGPPVTVKLPPGTPNGRVLRVRGKGAV--RKDGTRGDLLVTVEVAVPKDLS 359

Query: 362 DPERALVE 369
              R  +E
Sbjct: 360 GKAREALE 367

Length = 389

>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional

 Score =  197 bits (501), Expect = 2e-58
 Identities = 112/368 (30%), Positives = 183/368 (49%), Gaps = 55/368 (14%)

Query: 45  DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSV 104
           DYY  L V + A+ QEI+ +YRKLA++YHPD+NKSP A +K  EI+ A +VL D +KR  
Sbjct: 5   DYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQ 64

Query: 105 YDRFGEAGITGEYDGLSNTSQGVDPFELYSAFFGGSDGLFGGVGEAGGINFN------FG 158
           YD+FG A     +DG S  S            FG  + LF  +G +G  +F       FG
Sbjct: 65  YDQFGHAA----FDGSSGFSSN----------FGDFEDLFSNMGSSGFSSFTNIFSDFFG 110

Query: 159 N---------KGN--------------FGLD-----------IRCGGTGAKSSNCIQSCK 184
           +         KG               FG+D            +C G+GA+S++ I  C 
Sbjct: 111 SNKSDYQRSTKGQSVSLDIYLTFKELLFGVDKIIELDLLTNCSKCFGSGAESNSDIHICN 170

Query: 185 ACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPP 244
            C G G VL  +   F    Q + C+ C G GKII + C+ C G G+   ++ ++V IP 
Sbjct: 171 NCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKGKYLERKKIEVNIPK 230

Query: 245 GVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLN-LFSKISVDYTEAILG 303
           G+     +++  +G+      + GDL + +++ E +       N +    ++ Y +AILG
Sbjct: 231 GIRPNQQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILG 290

Query: 304 TSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDP 363
             + ++T++G    ++P  +   + + +   G+    N   RGD +  VN+++PK++S  
Sbjct: 291 NEIIIKTLDGDIKYKLPKSINSNELIIINNKGLYKSINKDKRGDLIIKVNIVVPKNLSKK 350

Query: 364 ERALVEEI 371
           E+ L+E+I
Sbjct: 351 EKELIEQI 358

Length = 372

>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional

 Score =  190 bits (484), Expect = 5e-56
 Identities = 118/351 (33%), Positives = 184/351 (52%), Gaps = 29/351 (8%)

Query: 45  DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSV 104
           DYY  L V + A+  ++K +Y KLA++YHPD   +  AE+KFKEI++AY+VL D++KR+ 
Sbjct: 4   DYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAA 63

Query: 105 YDRFGEAGITGEYDGLSNTSQGV------DPF-ELYSAFFGGSDGLFGGVGEAGG----- 152
           YDRFG      +       + G       D F + +S F GGS        +  G     
Sbjct: 64  YDRFGHDAFQNQQSRGGGGNHGGFHPDINDIFGDFFSDFMGGSRRSRPTSSKVRGSDLKY 123

Query: 153 ---INFNFGNKG-----NFGLDIRCG---GTGAKSSNCIQSCKACWGRGGVLKTQRTPFG 201
              IN      G     +F  +++C    G+G++    + +C AC G G      R   G
Sbjct: 124 NLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGETVTTCDACSGVG----ATRMQQG 179

Query: 202 LISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFD 261
             +    C KC G+G+II + C++C G G    +R++ V IP GV NG  ++  GEG   
Sbjct: 180 FFTIEQACHKCQGNGQIIKNPCKKCHGMGRYHKQRNLSVNIPAGVENGTRIRHTGEGEAG 239

Query: 262 RRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMK-DLRIP 320
            R   +GDL+V + +        DG NL  K+ + +  A LG  +EV  +EG K +L IP
Sbjct: 240 IRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEGGKVNLTIP 299

Query: 321 SGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEI 371
           +G Q GD ++L+  G+  + + ++RGD L  ++V +PK++S  +R L+EE 
Sbjct: 300 AGTQNGDQLRLRSKGMSKMRS-TIRGDMLTHIHVEVPKNLSKRQRELLEEF 349

Length = 372

>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional

 Score =  185 bits (472), Expect = 6e-54
 Identities = 115/365 (31%), Positives = 167/365 (45%), Gaps = 53/365 (14%)

Query: 45  DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRS 103
           D+Y  L V  +A+ +EIK +YRKLAR+ HPD N   P AEE+FK +S A++VLSD  KR 
Sbjct: 10  DFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRK 69

Query: 104 VYDRF-----------GEAGITGEYDGLSNTSQGVDPFELYSAFFGGSDGLFGGVGEAGG 152
            YD                   G + G      G + F L   F     G  GG+G+  G
Sbjct: 70  EYDETRRLFAGGGFGGRRFDGGGGFGGFGTGGDGAE-FNLNDLFDAAGRGGGGGIGDLFG 128

Query: 153 INFNFG---------NKGN-----FGLDIR--------------------CGGTGAKSSN 178
             FN G          +GN       LD                      C G+GA+   
Sbjct: 129 GLFNRGGGSARPSRPRRGNDLETETTLDFVEAAKGVTMPLRLTSPAPCTTCHGSGARPGT 188

Query: 179 CIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSM 238
             + C  C G  GV+   +  FG       C+ C G G II D C  C G G     R++
Sbjct: 189 SPKVCPTCNG-SGVISRNQGAFGF---SEPCTDCRGTGSIIEDPCEECKGTGVTTRTRTI 244

Query: 239 KVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYT 298
            V IPPGV +G  +++ G+G    R + +GDL+V +HV   +   RDG +L   + V +T
Sbjct: 245 NVRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFT 304

Query: 299 EAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPK 358
           E  LG+++ V T++G   +++P+G   G  ++++  GVP        GD L  V V +P 
Sbjct: 305 ELALGSTLSVPTLDGPVGVKVPAGTADGRILRVRGRGVP--KRSGGAGDLLVTVKVAVPP 362

Query: 359 DISDP 363
           ++   
Sbjct: 363 NLDGA 367

Length = 392

>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional

 Score =  173 bits (439), Expect = 2e-49
 Identities = 105/353 (29%), Positives = 181/353 (51%), Gaps = 30/353 (8%)

Query: 45  DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRS 103
           DYY  L + + A+  EIK +YRK+A KYHPD NK +  AE  FKE + AYEVL DD KR+
Sbjct: 4   DYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRA 63

Query: 104 VYDRFGEAGITG--EYDGLSNTSQGV-DPFE----LYSAFFGGSDGLFGGVGEAGGIN-- 154
            YDRFG     G   ++G S    G  D FE    ++ +FF G+ G         G +  
Sbjct: 64  QYDRFGHTAFEGGGGFEGFSGGFSGFSDIFEDFGDIFDSFFTGNRGQDKNRKHEKGQDLT 123

Query: 155 -----------FNFGNKGNFGLDIRCGGTGAKSSNCIQS---CKACWGRGGVLKTQRTPF 200
                        + N  N   ++ C     K S    S   C  C G G V++      
Sbjct: 124 YQIEISLEDAYLGYKNNINITRNMLCESCLGKKSEKGTSPSICNMCNGSGRVMQGG---- 179

Query: 201 GLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNF 260
           G     +TC KC G+GKII + C+ C G G ++ K ++++ IP G+ +   +++RG+G+ 
Sbjct: 180 GFFRVTTTCPKCYGNGKIISNPCKSCKGKGSLKKKETIELKIPAGIDDNQQIKMRGKGSV 239

Query: 261 DRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMK-DLRI 319
           +      GDL++ + +   +   R+G +L++ + + +T+A LG  ++++T+   K  ++I
Sbjct: 240 NPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKKIKIKI 299

Query: 320 PSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIA 372
           P G +  + + ++  G+P ++     G+ + I+ +  PK+++     L+E ++
Sbjct: 300 PKGTENDEQIIIKNEGMPILHTEKF-GNLILIIKIKTPKNLNSNAIKLLENLS 351

Length = 365

>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional

 Score =  171 bits (434), Expect = 3e-48
 Identities = 108/347 (31%), Positives = 160/347 (46%), Gaps = 60/347 (17%)

Query: 46  YYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVY 105
            Y  LN+ ++ T  EIK +YRKLA K+HPD     G  EKFKEIS AYEVLSD EKR +Y
Sbjct: 30  LYEVLNLSKDCTTSEIKKAYRKLAIKHHPD---KGGDPEKFKEISRAYEVLSDPEKRKIY 86

Query: 106 DRFGEAGITGEYDGLSNTSQGVDPFELYSAFFGGS--------------------DGLFG 145
           D +GE       +GL    Q  D  +L+   FGG                     + ++ 
Sbjct: 87  DEYGE-------EGLEGGEQPADASDLFDLIFGGGRKPGGKKRGEDIVSHLKVTLEQIYN 139

Query: 146 GVGEAGGINFNFGNKGNFGLDIRC----GGTGAKSSNCIQSCKACWGRGGVLKTQRTPFG 201
           G      IN           D+ C    G  G K +     CK C G+G  ++ Q    G
Sbjct: 140 GAMRKLAIN----------KDVICANCEGHGGPKDA--FVDCKLCNGQG--IRVQIRQMG 185

Query: 202 -LISQV-STCSKCGGDGKII--IDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGE 257
            +I Q  STC+ C G GKII     C+ C G G  ++++ ++V I  GV N   +   GE
Sbjct: 186 SMIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDKGVPNQHKITFHGE 245

Query: 258 GNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDL 317
            + ++   + G++   L+        R+G +LF    +   EA+ G    +  ++G K L
Sbjct: 246 AD-EKPNEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDGRK-L 303

Query: 318 RI---PSGV-QPGDTVKLQQMGVPDINNPSVRGDHLFIV-NVLIPKD 359
            +   P  V +PGD   +   G+P   +P  +G +L++   V+ P D
Sbjct: 304 LVNTPPGEVVKPGDIKVINNEGMPTYKSPFKKG-NLYVTFEVIFPVD 349

Length = 421

>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional

 Score =  161 bits (407), Expect = 6e-45
 Identities = 114/349 (32%), Positives = 179/349 (51%), Gaps = 34/349 (9%)

Query: 46  YYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPG-AEEKFKEISSAYEVLSDDEKRSV 104
           YY  L V +++  + IK SYRKLA KYHPD N     AEEKFK I+ AY VLSD++KR++
Sbjct: 5   YYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRAL 64

Query: 105 YDRFGEAGITGEYDGLSNTSQGVDPFELYSAFFGGSDGLFGGVG-------------EAG 151
           YDR+G+ G+       S+ S   D FE   +FF  + G FG  G             +  
Sbjct: 65  YDRYGKKGLNQAGASQSDFS---DFFEDLGSFFEDAFG-FGARGSKRQKSSIAPDYLQTI 120

Query: 152 GINFN---FGNKGNFGLDIR-----CGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLI 203
            ++F    FG K    +  +     C GTGAK    +++CK C G+G V   Q    G +
Sbjct: 121 ELSFKEAVFGCKKTIKVQYQSVCESCDGTGAK-DKALETCKQCNGQGQVFMRQ----GFM 175

Query: 204 SQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRR 263
           S   TC  C G GKII   C+ C G   +     +  +IP G+ +   M ++ +GN +  
Sbjct: 176 SFAQTCGACQGKGKIIKTPCQACKGKTYILKDEEIDAIIPEGIDDQNRMVLKNKGN-EYE 234

Query: 264 RSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMK-DLRIPSG 322
           +   GDL++   V E +   R+G +LF +  V +T   LG +++V +++G + +L+IP  
Sbjct: 235 KGKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRN 294

Query: 323 VQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEI 371
            +   T   +  GV    + S RG  +  + V+ PK ++  ++ L+E++
Sbjct: 295 ARDRQTFAFRNEGVKHPES-SYRGSLIVELQVIYPKSLNKEQQELLEKL 342

Length = 369

>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional

 Score =  152 bits (386), Expect = 1e-42
 Identities = 105/337 (31%), Positives = 156/337 (46%), Gaps = 58/337 (17%)

Query: 41  AAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDE 100
            A  DYY+ L V +NA+  EIK +++KLARKYHPD+NKSPGAEEKFKEI+ AY VLSD E
Sbjct: 1   MAYKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPE 60

Query: 101 KRSVYDRFGEAGITGEYDGLSNTSQGVDPF-----ELYSAFFGGSDGLFGGVGEAGGINF 155
           KR +YD +G    +  + G      G   F       +S FF     LFGG G  GG   
Sbjct: 61  KRRIYDTYGTTAASAGWQGPPPGPPGGGDFSGFNVGDFSDFF---QQLFGGRGGFGGFGD 117

Query: 156 NFGNKGNFGLDIRCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGD 215
            FG+ G            A+             +G  L+ +  P  L          GG+
Sbjct: 118 LFGSVGR----------RAR-------------KGRDLEAE-LPLTLEEAYR-----GGE 148

Query: 216 GKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALH 275
             + +                 + V IPPGV  G  +++ G+G         GDL++ + 
Sbjct: 149 KVVEVA-------------GERLSVRIPPGVREGQVIRLAGKGR------QGGDLYLVVR 189

Query: 276 VDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMG 335
           +        +G +L++ + V    A++G  + V T++G  ++ IP   Q G  ++L+  G
Sbjct: 190 LLPHPVFRLEGDDLYATVDVPAPIAVVGGKVRVMTLDGPVEVTIPPRTQAGRKLRLKGKG 249

Query: 336 VPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIA 372
            P    P+ RGD    V + IP   +  E  L +++A
Sbjct: 250 WP--RGPAGRGDQYAEVRITIPTRPTPEEERLYKQLA 284

Length = 291

>gnl|CDD|199909 cd10747, DnaJ_C, C-terminal substrate binding domain of DnaJ and HSP40

 Score =  131 bits (332), Expect = 2e-36
 Identities = 47/129 (36%), Positives = 73/129 (56%), Gaps = 1/129 (0%)

Query: 232 VQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFS 291
           V+ K+++ V IP GV +G  +++RGEG+        GDL+V + V       RDG +L+ 
Sbjct: 31  VREKKTLTVKIPAGVDDGQRLRLRGEGDAGPNGGPPGDLYVVIRVKPHPVFRRDGNDLYC 90

Query: 292 KISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFI 351
           ++ +  TEA+LG  +EV T+ G   L+IP G QPG  ++L+  G+P +     RGD    
Sbjct: 91  EVPISLTEALLGGEIEVPTLGGKVKLKIPPGTQPGTVLRLKGKGMPRL-RGGGRGDLYVE 149

Query: 352 VNVLIPKDI 360
           V V  PK +
Sbjct: 150 VKVEFPKKL 158

The C-terminal region of the DnaJ/Hsp40 protein mediates oligomerization and binding to denatured polypeptide substrate. DnaJ/Hsp40 is a widely conserved heat-shock protein. It prevents the aggregation of unfolded substrate and forms a ternary complex with both substrate and DnaK/Hsp70; the N-terminal J-domain of DnaJ/Hsp40 stimulates the ATPase activity of DnaK/Hsp70. Length = 158

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score =  112 bits (282), Expect = 2e-30
 Identities = 40/63 (63%), Positives = 48/63 (76%), Gaps = 1/63 (1%)

Query: 45  DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGA-EEKFKEISSAYEVLSDDEKRS 103
           DYY  L V ++A+ +EIK +YRKLA KYHPD N    A EEKFKEI+ AYEVLSD EKR+
Sbjct: 1   DYYEILGVPRDASDEEIKKAYRKLALKYHPDKNPGDPAAEEKFKEINEAYEVLSDPEKRA 60

Query: 104 VYD 106
           +YD
Sbjct: 61  IYD 63

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain

 Score = 99.6 bits (249), Expect = 7e-26
 Identities = 39/60 (65%), Positives = 44/60 (73%), Gaps = 2/60 (3%)

Query: 44  TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS--PGAEEKFKEISSAYEVLSDDEK 101
           TDYY  L V ++A+L EIK +YRKLA KYHPD N      AEEKFKEI+ AYEVLSD EK
Sbjct: 1   TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60

Length = 60

>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional

 Score =  101 bits (253), Expect = 6e-24
 Identities = 42/103 (40%), Positives = 65/103 (63%), Gaps = 13/103 (12%)

Query: 45  DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSV 104
           DYY+ + V+    L+ IKT+YR+LARKYHPD++K P AE +FKE++ A+EVLSD+++R+ 
Sbjct: 5   DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64

Query: 105 YD---------RFGEAGITGEYDGLSNTSQGVDPFELYSAFFG 138
           YD         +F         DG S  ++  D  +++S+ FG
Sbjct: 65  YDQLWQHRNDPQFNRQ--FQHGDGQSFNAEDFD--DIFSSIFG 103

Length = 306

>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain

 Score = 93.8 bits (234), Expect = 6e-24
 Identities = 36/55 (65%), Positives = 41/55 (74%), Gaps = 1/55 (1%)

Query: 45 DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS-PGAEEKFKEISSAYEVLSD 98
          DYY  L V  +A+ +EIK +YRKLA KYHPD N   P AEEKFKEI+ AYEVLSD
Sbjct: 1  DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score = 95.3 bits (236), Expect = 3e-22
 Identities = 62/251 (24%), Positives = 92/251 (36%), Gaps = 36/251 (14%)

Query: 45  DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPG--AEEKFKEISSAYEVLSDDEKR 102
           DYY  L V  NA+L+EIK +YRKLA KYHPD N      AEEKFKEI+ AYE+LSD E+R
Sbjct: 7   DYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERR 66

Query: 103 SVYDRFGEA----GITGEYDGLSNTSQGVDPFELYSAFFGGSDGLFGGVGEAGGINFNFG 158
           + YD+ G      G +            +    LY  + G          E      +  
Sbjct: 67  AEYDKIGADNYFPGKSYRESAAFPIEGSLQLTGLYEEWRG-----KRNKTERKASLADLL 121

Query: 159 NKGNFGLDIRCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKI 218
           ++G  GL         +++           R G L+ +     L          G    +
Sbjct: 122 SRGLSGLAAALSLFADEAA----------LRSGSLRRRDLAANLADNFEEALA-GVKKAV 170

Query: 219 IIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDE 278
                            +++K  I  G   G  ++++G       R   G   +      
Sbjct: 171 ARL------------LGKALKSTIKAGALEGKALRLKGLL--KSARGALGKARLKELSKR 216

Query: 279 KQGIHRDGLNL 289
                 +G + 
Sbjct: 217 HPPFALEGDDK 227

Length = 237

>gnl|CDD|216569 pfam01556, DnaJ_C, DnaJ C terminal domain

 Score = 83.8 bits (208), Expect = 5e-20
 Identities = 29/81 (35%), Positives = 52/81 (64%), Gaps = 1/81 (1%)

Query: 288 NLFSKISVDYTEAILGTSMEVETVEGMK-DLRIPSGVQPGDTVKLQQMGVPDINNPSVRG 346
           +L+  + +   EA+LG ++EV T++G K  ++IP+G QPGD ++++  G+P     + RG
Sbjct: 1   DLYVTLPISLKEALLGGTVEVPTLDGRKVKIKIPAGTQPGDKLRIKGKGMPINKGGNGRG 60

Query: 347 DHLFIVNVLIPKDISDPERAL 367
           D +  +NV IPK +S  ++ L
Sbjct: 61  DLIVTLNVKIPKKLSSEQKEL 81

This family consists of the C terminal region form the DnaJ protein. Although the function of this region is unknown, it is always found associated with pfam00226 and pfam00684. DnaJ is a chaperone associated with the Hsp70 heat-shock system involved in protein folding and renaturation after stress. Length = 81

>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ

 Score = 93.0 bits (230), Expect = 5e-20
 Identities = 37/74 (50%), Positives = 52/74 (70%)

Query: 45  DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSV 104
           DYY  L + ++A  QEIK ++RKLA+KYHPD NK+P A   F EI+ A +VLS+ +KR+ 
Sbjct: 3   DYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRAN 62

Query: 105 YDRFGEAGITGEYD 118
           YD++G  G+  E D
Sbjct: 63  YDKYGHDGVDREDD 76

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871

>gnl|CDD|199908 cd10719, DnaJ_zf, Zinc finger domain of DnaJ and HSP40

 Score = 81.9 bits (203), Expect = 1e-19
 Identities = 28/63 (44%), Positives = 34/63 (53%)

Query: 168 RCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCG 227
            C G+GAK     ++C  C G G V + Q T FG     +TC  CGG GKII D C +C 
Sbjct: 3   TCNGSGAKPGTKPKTCPTCGGSGQVRQVQGTGFGFFQTQTTCPTCGGTGKIIKDPCPKCK 62

Query: 228 GNG 230
           G G
Sbjct: 63  GKG 65

Central/middle or CxxCxGxG-motif containing domain of DnaJ/Hsp40 (heat shock protein 40). DnaJ proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonin family. Hsp40 proteins are characterized by the presence of an N-terminal J domain, which mediates the interaction with Hsp70. This central domain contains four repeats of a CxxCxGxG motif and binds to two Zinc ions. It has been implicated in substrate binding. Length = 65

>gnl|CDD|216058 pfam00684, DnaJ_CXXCXGXG, DnaJ central domain

 Score = 73.2 bits (180), Expect = 2e-16
 Identities = 32/62 (51%), Positives = 37/62 (59%)

Query: 169 CGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGG 228
           C GTGAK     ++C  C G G V+K QRTP G+     TC KCGG GKII D C+ C G
Sbjct: 4   CHGTGAKPGKKPKTCPQCNGSGQVVKRQRTPGGVFQMQQTCPKCGGTGKIIKDPCKVCKG 63

Query: 229 NG 230
            G
Sbjct: 64  KG 65

The central cysteine-rich (CR) domain of DnaJ proteins contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DNAJ cysteine rich domain and various hydrophobic peptides has been found. Length = 65

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 63.3 bits (153), Expect = 2e-10
 Identities = 29/72 (40%), Positives = 42/72 (58%)

Query: 44  TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRS 103
           T +Y  L V  NA ++EI   Y KLA  Y+P          KFK+I+ AY++L D +K+ 
Sbjct: 573 TLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKK 632

Query: 104 VYDRFGEAGITG 115
           +Y++FG  GI G
Sbjct: 633 MYNKFGYDGIKG 644

Length = 1136

>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional

 Score = 55.2 bits (133), Expect = 2e-08
 Identities = 36/146 (24%), Positives = 71/146 (48%), Gaps = 3/146 (2%)

Query: 231 EVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLF 290
           E +  +++ V IP GV NG  ++++G+G         GDL++ +H+         G +L 
Sbjct: 153 EQEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLE 212

Query: 291 SKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLF 350
             + +   EA LG  + V T++    L IP G Q G  ++++  G   + +    GD   
Sbjct: 213 IVVPLAPWEAALGAKVTVPTLKESILLTIPPGSQAGQRLRVKGKG---LVSKKQTGDLYA 269

Query: 351 IVNVLIPKDISDPERALVEEIAFLKS 376
           ++ +++P    +   AL +++A  +S
Sbjct: 270 VLKIVMPPKPDEKTAALWQQLADAQS 295

Length = 306

>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

 Score = 56.5 bits (136), Expect = 2e-08
 Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 16/93 (17%)

Query: 43  GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGA--------EEKFKEISSAYE 94
           G D Y  L + Q+ + ++IK  YR L+ K+HPD  K+P          EEK+K I+ AY 
Sbjct: 97  GFDPYEILGIDQDTSERDIKKRYRMLSMKFHPD--KAPPMVNELRSEYEEKYKTITKAYG 154

Query: 95  VLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGV 127
           +L+D ++R  Y  +G        D   +TS+G+
Sbjct: 155 LLTDKKRRENYLNYGTP------DSPQHTSEGI 181

Length = 610

>gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional

 Score = 49.8 bits (120), Expect = 1e-06
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 8/76 (10%)

Query: 29  GNNRSHRRGMIRAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPG------- 81
                +++        D Y  L V ++   QEIK +YRKL  ++HPD   + G       
Sbjct: 185 QGGGGYQQAQRGPTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMME 244

Query: 82  -AEEKFKEISSAYEVL 96
            A+EK +EI +AYE++
Sbjct: 245 MAKEKAQEIQAAYELI 260

Length = 267

>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

 Score = 45.8 bits (108), Expect = 3e-05
 Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 45  DYYSTLNV---RQNATLQEIKTSYRKLARKYHPDINKSPGA---EEKFKEISSAYEVLSD 98
           D Y+ L +   R  A   +I  +++K   KYHPD   + G    +E FK I  A EVL D
Sbjct: 44  DLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGD 103

Query: 99  DEKRSVYD 106
            + R  YD
Sbjct: 104 RKLRLQYD 111

Length = 379

>gnl|CDD|167217 PRK01356, hscB, co-chaperone HscB; Provisional

 Score = 40.6 bits (95), Expect = 5e-04
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 6/67 (8%)

Query: 45  DYYSTLNVRQ--NATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISS----AYEVLSD 98
           +Y+  L + Q  N  L+ ++  Y  +  KYHPD  K+   +E+   I+S    AY  L D
Sbjct: 3   NYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKD 62

Query: 99  DEKRSVY 105
             KR+ Y
Sbjct: 63  ALKRAEY 69

Length = 166

>gnl|CDD|216569 pfam01556, DnaJ_C, DnaJ C terminal domain

 Score = 38.3 bits (90), Expect = 6e-04
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 236 RSMKVVIPPGVSNGATMQIRGEGNFDRRRSLA-GDLFVALHVD 277
           R +K+ IP G   G  ++I+G+G    +     GDL V L+V 
Sbjct: 27  RKVKIKIPAGTQPGDKLRIKGKGMPINKGGNGRGDLIVTLNVK 69

This family consists of the C terminal region form the DnaJ protein. Although the function of this region is unknown, it is always found associated with pfam00226 and pfam00684. DnaJ is a chaperone associated with the Hsp70 heat-shock system involved in protein folding and renaturation after stress. Length = 81

>gnl|CDD|224002 COG1076, DjlA, DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

 Score = 40.0 bits (94), Expect = 8e-04
 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 8/69 (11%)

Query: 45  DYYSTLNVRQNAT--LQEIKTSYRKLARKYHPDINKSPGAEEK------FKEISSAYEVL 96
           D +    + +     L  +K  YR+L R YHPD        E+        E++ AY+ L
Sbjct: 2   DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTL 61

Query: 97  SDDEKRSVY 105
            D   R+ Y
Sbjct: 62  KDPLLRAEY 70

Length = 174

>gnl|CDD|224032 COG1107, COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 8/59 (13%)

Query: 205 QVSTCSKCGGDGKIIIDH--CRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFD 261
            +  C +CGG GKI++    C  C G G            P GV+N +   +    +F+
Sbjct: 1   MIKKCPECGGKGKIVVGEEECPVCHGTGFSDD------FDPKGVANLSRETVDLFASFE 53

Length = 715

>gnl|CDD|224032 COG1107, COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 24/78 (30%), Positives = 29/78 (37%), Gaps = 15/78 (19%)

Query: 167 IRCGGTGAKSSNCI--QSCKACWGRG--------GVLKTQRTPF-GLISQVSTCSKCGGD 215
             CGG G      +  + C  C G G        GV    R       S    C KC G 
Sbjct: 6   PECGGKGKI---VVGEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGK 62

Query: 216 GKI-IIDHCRRCGGNGEV 232
           G + + D C  CGG G+V
Sbjct: 63  GTVTVYDTCPECGGTGKV 80

Length = 715

>gnl|CDD|211601 TIGR00714, hscB, Fe-S protein assembly co-chaperone HscB

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 59  QEIKTSYRKLARKYHPDINKS----PGAEEKFKEISSAYEVLSDDEKRSVY 105
             ++  YR+L  +YHPD +        A ++   ++ AY  L D  +R+ Y
Sbjct: 6   SRLRKRYRQLQAQYHPDASGMAQEQLAASQQSTTLNQAYHTLKDPLRRAEY 56

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock [Protein fate, Protein folding and stabilization]. Length = 155

>gnl|CDD|199909 cd10747, DnaJ_C, C-terminal substrate binding domain of DnaJ and HSP40

 Score = 38.2 bits (90), Expect = 0.003
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 9/75 (12%)

Query: 288 NLFSKISVDYTEAILGTSMEVE------TVEGMKDL--RIPSGVQPGDTVKLQQMGVPDI 339
           +L   + +   EA  G   E++       V   K L  +IP+GV  G  ++L+  G    
Sbjct: 2   DLRYDLELTLEEAYFGKEKEIKIPRKVTRVREKKTLTVKIPAGVDDGQRLRLRGEGDAGP 61

Query: 340 NNPSVRGDHLFIVNV 354
           N     GD   ++ V
Sbjct: 62  NG-GPPGDLYVVIRV 75

The C-terminal region of the DnaJ/Hsp40 protein mediates oligomerization and binding to denatured polypeptide substrate. DnaJ/Hsp40 is a widely conserved heat-shock protein. It prevents the aggregation of unfolded substrate and forms a ternary complex with both substrate and DnaK/Hsp70; the N-terminal J-domain of DnaJ/Hsp40 stimulates the ATPase activity of DnaK/Hsp70. Length = 158

>gnl|CDD|224002 COG1076, DjlA, DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

 Score = 37.7 bits (88), Expect = 0.004
 Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 14/61 (22%)

Query: 45  DYYSTLNVRQNATLQEIKTSYRKLARKYHPD-----------INKSPGAEEKFKEISSAY 93
           D    L V   A    IK +YRKL  + HPD           I K    +EK +EI  AY
Sbjct: 114 DALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEK---LKEKLQEIQEAY 170

Query: 94  E 94
           E
Sbjct: 171 E 171

Length = 174

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	485
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	100.0
PRK14296	372	chaperone protein DnaJ; Provisional	100.0
PRK14298	377	chaperone protein DnaJ; Provisional	100.0
PRK14287	371	chaperone protein DnaJ; Provisional	100.0
PRK14276	380	chaperone protein DnaJ; Provisional	100.0
PRK14278	378	chaperone protein DnaJ; Provisional	100.0
PRK14280	376	chaperone protein DnaJ; Provisional	100.0
PRK14288	369	chaperone protein DnaJ; Provisional	100.0
PRK14277	386	chaperone protein DnaJ; Provisional	100.0
PTZ00037	421	DnaJ_C chaperone protein; Provisional	100.0
PRK14286	372	chaperone protein DnaJ; Provisional	100.0
PRK14297	380	chaperone protein DnaJ; Provisional	100.0
PRK14284	391	chaperone protein DnaJ; Provisional	100.0
PRK14281	397	chaperone protein DnaJ; Provisional	100.0
PRK14282	369	chaperone protein DnaJ; Provisional	100.0
PRK14279	392	chaperone protein DnaJ; Provisional	100.0
PRK14285	365	chaperone protein DnaJ; Provisional	100.0
PRK14301	373	chaperone protein DnaJ; Provisional	100.0
PRK14294	366	chaperone protein DnaJ; Provisional	100.0
PRK14300	372	chaperone protein DnaJ; Provisional	100.0
PRK14295	389	chaperone protein DnaJ; Provisional	100.0
PRK10767	371	chaperone protein DnaJ; Provisional	100.0
PRK14291	382	chaperone protein DnaJ; Provisional	100.0
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	100.0
PRK14289	386	chaperone protein DnaJ; Provisional	100.0
PRK14283	378	chaperone protein DnaJ; Provisional	100.0
PRK14292	371	chaperone protein DnaJ; Provisional	100.0
PRK14293	374	chaperone protein DnaJ; Provisional	100.0
PRK14290	365	chaperone protein DnaJ; Provisional	100.0
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	100.0
PRK14299	291	chaperone protein DnaJ; Provisional	100.0
PRK10266	306	curved DNA-binding protein CbpA; Provisional	100.0
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	100.0
KOG0713	336	consensus Molecular chaperone (DnaJ superfamily) [	100.0
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	100.0
KOG0714	306	consensus Molecular chaperone (DnaJ superfamily) [	99.88
PF01556	81	CTDII: DnaJ C terminal domain; InterPro: IPR002939	99.82
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	99.78
KOG0716	279	consensus Molecular chaperone (DnaJ superfamily) [	99.77
KOG0691	296	consensus Molecular chaperone (DnaJ superfamily) [	99.76
KOG0718	546	consensus Molecular chaperone (DnaJ superfamily) [	99.74
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.73
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.69
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	99.69
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.68
KOG0719	264	consensus Molecular chaperone (DnaJ superfamily) [	99.66
PHA03102	153	Small T antigen; Reviewed	99.65
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	99.6
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.57
KOG0721	230	consensus Molecular chaperone (DnaJ superfamily) [	99.56
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.52
KOG0722	329	consensus Molecular chaperone (DnaJ superfamily) [	99.41
PRK05014	171	hscB co-chaperone HscB; Provisional	99.39
PRK01356	166	hscB co-chaperone HscB; Provisional	99.37
KOG0720	490	consensus Molecular chaperone (DnaJ superfamily) [	99.34
PRK00294	173	hscB co-chaperone HscB; Provisional	99.34
PRK03578	176	hscB co-chaperone HscB; Provisional	99.3
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	99.27
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.24
PTZ00100	116	DnaJ chaperone protein; Provisional	99.23
PRK14289	386	chaperone protein DnaJ; Provisional	99.23
PRK14293	374	chaperone protein DnaJ; Provisional	99.22
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	99.18
PRK14285	365	chaperone protein DnaJ; Provisional	99.18
PHA02624	647	large T antigen; Provisional	99.18
PRK14287	371	chaperone protein DnaJ; Provisional	99.16
PRK14279	392	chaperone protein DnaJ; Provisional	99.14
PRK14301	373	chaperone protein DnaJ; Provisional	99.14
PRK14276	380	chaperone protein DnaJ; Provisional	99.12
PRK14296	372	chaperone protein DnaJ; Provisional	99.09
PRK14298	377	chaperone protein DnaJ; Provisional	99.09
PRK14292	371	chaperone protein DnaJ; Provisional	99.09
PRK14280	376	chaperone protein DnaJ; Provisional	99.08
PRK14297	380	chaperone protein DnaJ; Provisional	99.07
PRK14295	389	chaperone protein DnaJ; Provisional	99.06
PRK14286	372	chaperone protein DnaJ; Provisional	99.06
PRK14283	378	chaperone protein DnaJ; Provisional	99.06
PRK14282	369	chaperone protein DnaJ; Provisional	99.05
PRK14277	386	chaperone protein DnaJ; Provisional	99.05
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	99.04
PRK14278	378	chaperone protein DnaJ; Provisional	99.04
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.04
PRK14288	369	chaperone protein DnaJ; Provisional	99.02
PRK14284	391	chaperone protein DnaJ; Provisional	99.02
PRK14294	366	chaperone protein DnaJ; Provisional	99.01
PRK14281	397	chaperone protein DnaJ; Provisional	99.01
PRK10767	371	chaperone protein DnaJ; Provisional	99.0
PRK14300	372	chaperone protein DnaJ; Provisional	98.99
PRK14291	382	chaperone protein DnaJ; Provisional	98.9
PRK14290	365	chaperone protein DnaJ; Provisional	98.88
PTZ00037	421	DnaJ_C chaperone protein; Provisional	98.88
PRK14299	291	chaperone protein DnaJ; Provisional	98.87
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	98.86
PRK01773	173	hscB co-chaperone HscB; Provisional	98.84
PRK10266	306	curved DNA-binding protein CbpA; Provisional	98.66
KOG1150	250	consensus Predicted molecular chaperone (DnaJ supe	98.52
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	98.51
KOG0568	342	consensus Molecular chaperone (DnaJ superfamily) [	98.29
PLN03165	111	chaperone protein dnaJ-related; Provisional	98.21
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.16
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	98.08
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	97.83
PF01556	81	CTDII: DnaJ C terminal domain; InterPro: IPR002939	97.45
KOG0723	112	consensus Molecular chaperone (DnaJ superfamily) [	97.22
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	96.96
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	96.86
COG1107	715	Archaea-specific RecJ-like exonuclease, contains D	96.63
KOG3192	168	consensus Mitochondrial J-type chaperone [Posttran	96.31
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	95.58
COG1107	715	Archaea-specific RecJ-like exonuclease, contains D	95.22
PLN03165	111	chaperone protein dnaJ-related; Provisional	95.05
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	94.84
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	94.57
KOG2813	406	consensus Predicted molecular chaperone, contains	94.13
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	93.86
KOG2813	406	consensus Predicted molecular chaperone, contains	93.04
KOG0431	453	consensus Auxilin-like protein and related protein	91.69
PF03656	127	Pam16: Pam16; InterPro: IPR005341 The Pam16 protei	82.66
KOG0724	335	consensus Zuotin and related molecular chaperones	82.43
PF11833	194	DUF3353: Protein of unknown function (DUF3353); In	81.61

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.4e-88  Score=686.86  Aligned_cols=320  Identities=43%  Similarity=0.716  Sum_probs=285.7

Q ss_pred             cCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCC-CccHHHHHHHHHHHHhhhccccccchhccccccCcCcccCCC
Q 011450           42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGL  120 (485)
Q Consensus        42 ~~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~-~~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~~~~~~~  120 (485)
                      +.+|||+||||+++||++|||+|||+||+|||||+|+ +++|+++|++|++||||||||+||++||+||++++++++.++
T Consensus         2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~gg   81 (371)
T COG0484           2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGFGG   81 (371)
T ss_pred             CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCCcCC
Confidence            5789999999999999999999999999999999999 889999999999999999999999999999999987333222


Q ss_pred             -CCCCCCCCchhhhhhhcCCCCCCCCCCCCCCCcccccCCCCCccc----------------------------ccccCC
Q 011450          121 -SNTSQGVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGL----------------------------DIRCGG  171 (485)
Q Consensus       121 -~~~~~~~dp~d~f~~fFgg~~g~fg~~g~~~g~~~~~~~~~~~~~----------------------------di~C~G  171 (485)
                       +.++.+.++.|+|++|||+..  ++. .        ..+.+.++.                            |..|+|
T Consensus        82 ~g~~~fgg~~~DIF~~~FgGg~--~~~-~--------~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~G  150 (371)
T COG0484          82 FGFGGFGGDFGDIFEDFFGGGG--GGR-R--------RPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHG  150 (371)
T ss_pred             CCcCCCCCCHHHHHHHhhcCCC--ccc-C--------CCCCcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCC
Confidence             112122268899999996321  111 0        001122222                            233999


Q ss_pred             CCCCCCCCcccCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEeecccccCCCceeeeceEEEEEcCCCCCCCCE
Q 011450          172 TGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGAT  251 (485)
Q Consensus       172 tG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~dG~~  251 (485)
                      +|++.++.+.+|++|+|+|++...+++  |.+++.++|+.|+|+|++|.++|.+|+|.|++++.++|+|+||||+.+|++
T Consensus       151 sGak~gt~~~tC~tC~G~G~v~~~~~~--g~~~~~~~C~~C~G~G~~i~~pC~~C~G~G~v~~~~~i~V~IPaGv~~g~~  228 (371)
T COG0484         151 SGAKPGTDPKTCPTCNGSGQVRTVQRT--GFFSFQQTCPTCNGTGKIIKDPCGKCKGKGRVKKKKSISVNIPAGVDDGDR  228 (371)
T ss_pred             CCCCCCCCCCcCCCCCCcCeEEEEEee--eEEEEEEECCCCccceeECCCCCCCCCCCCeEeeeeEEEEECCCCCccCCE
Confidence            999999999999999999999888777  888889999999999999999999999999999999999999999999999


Q ss_pred             EEEccccCCCCCCCCCccEEEEEEeeccccccccccceEEEEEecchhhccCceEEEEccCCeEEEEeCCCCCCCCEEEE
Q 011450          252 MQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKL  331 (485)
Q Consensus       252 Ir~~G~Gd~~~~g~~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~irl  331 (485)
                      |++.|+|+++.+++++|||||.|.|++|+.|+|+|+|||++++|++.+|+||++++||||+|.++|+||+|+|+|++++|
T Consensus       229 ir~~g~G~~g~~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~g~~~l~ip~Gtq~G~~~rl  308 (371)
T COG0484         229 IRLSGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGRVKLKIPAGTQTGEVFRL  308 (371)
T ss_pred             EEEecCcccCCCCCCCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCCEEEEEecCCCEEEecCCCCccCcEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 011450          332 QQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK  375 (485)
Q Consensus       332 ~g~G~P~~~~~~~rGDL~V~~~V~~P~~ls~~q~~ll~~l~~~~  375 (485)
                      +|+|||..++ ..+|||||+|+|++|++|+.+|++||++|++..
T Consensus       309 ~gkG~p~~~~-~~~GDl~v~v~v~~P~~ls~~q~~lL~~~~~~~  351 (371)
T COG0484         309 RGKGMPKLRS-GGRGDLYVRVKVETPKNLSDEQKELLEEFAKSL  351 (371)
T ss_pred             cCCCccccCC-CCcCCEEEEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence            9999998765 567999999999999999999999999999876

>PRK14296 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=3.8e-75  Score=604.74  Aligned_cols=331  Identities=30%  Similarity=0.560  Sum_probs=275.8

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhhhccccccchhccccccCcCcccC-CCC
Q 011450           43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYD-GLS  121 (485)
Q Consensus        43 ~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~~~~~-~~~  121 (485)
                      .+|||++|||+++||.+|||+|||+||++||||+|+++.|+++|++|++||+|||||+||+.||+||++++.++.+ +++
T Consensus         3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~~~~~~~~~   82 (372)
T PRK14296          3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFDGSSGFSSN   82 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccchhhcCCCCcCcC
Confidence            5799999999999999999999999999999999998889999999999999999999999999999987753211 000


Q ss_pred             CCC----------CCC-CchhhhhhhcCCCCCCCCCCCCCCCccc--------cc-CCCC-------CcccccccCCCCC
Q 011450          122 NTS----------QGV-DPFELYSAFFGGSDGLFGGVGEAGGINF--------NF-GNKG-------NFGLDIRCGGTGA  174 (485)
Q Consensus       122 ~~~----------~~~-dp~d~f~~fFgg~~g~fg~~g~~~g~~~--------~~-~~~~-------~~~~di~C~GtG~  174 (485)
                      .+.          .++ ++.|+|+.|||+.. . ....+..+.+.        .. ....       ....|..|+|+|+
T Consensus        83 ~~~~~~~~~~~~~~g~~~f~d~f~~~fggg~-~-~~~~~~~g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~G~G~  160 (372)
T PRK14296         83 FGDFEDLFSNMGSSGFSSFTNIFSDFFGSNK-S-DYQRSTKGQSVSLDIYLTFKELLFGVDKIIELDLLTNCSKCFGSGA  160 (372)
T ss_pred             CCccccccccccccccccchhhhhhhcCCCc-c-CCCCcCCCCCeEEEeeccHHHhhCCeeEEEEEeeeeccCCCCCCcc
Confidence            000          011 23367778875310 0 00000000000        00 0000       0112333999999


Q ss_pred             CCCCCcccCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEeecccccCCCceeeeceEEEEEcCCCCCCCCEEEE
Q 011450          175 KSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQI  254 (485)
Q Consensus       175 ~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~dG~~Ir~  254 (485)
                      +.+..+.+|+.|+|+|.++..++.++.+++..++|+.|+|+|+++...|+.|+|.|++.+.++++|.||||+++|++|+|
T Consensus       161 ~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~  240 (372)
T PRK14296        161 ESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKGKYLERKKIEVNIPKGIRPNQQIKL  240 (372)
T ss_pred             CCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeecccccCCCCceEEEEEEEEEEEECCCCCCCCEEEE
Confidence            99888999999999999988877766556667899999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCCCCccEEEEEEeecccccccc-ccceEEEEEecchhhccCceEEEEccCCeEEEEeCCCCCCCCEEEEcC
Q 011450          255 RGEGNFDRRRSLAGDLFVALHVDEKQGIHRD-GLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQ  333 (485)
Q Consensus       255 ~G~Gd~~~~g~~~GDL~v~I~v~~h~~F~R~-G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~irl~g  333 (485)
                      +|+|+++..++.+|||+|+|+++||+.|+|+ |+||+++++|||.|||+|+++.|+||||+++|+||+++++|++++|+|
T Consensus       241 ~g~G~~~~~~~~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl~eAllG~~~~i~tldG~~~v~ip~~t~~g~~~ri~G  320 (372)
T PRK14296        241 SQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEIIIKTLDGDIKYKLPKSINSNELIIINN  320 (372)
T ss_pred             eccccCCCCCCCCccEEEEEEEeCCCCEEEeCCCcEEEEEecCHHHHhCCCEEEeeCCCCCEEEEECCccCCCcEEEEcC
Confidence            9999998778889999999999999999995 899999999999999999999999999998999999999999999999


Q ss_pred             CCCCCCCCCCCCccEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 011450          334 MGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK  375 (485)
Q Consensus       334 ~G~P~~~~~~~rGDL~V~~~V~~P~~ls~~q~~ll~~l~~~~  375 (485)
                      +|||...+++.+|||||+|+|+||+.|+++|+++|++|++..
T Consensus       321 kGmP~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l~~l~~~~  362 (372)
T PRK14296        321 KGLYKSINKDKRGDLIIKVNIVVPKNLSKKEKELIEQIYEQT  362 (372)
T ss_pred             CCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence            999965555578999999999999999999999999998753

>PRK14298 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=7.9e-74  Score=595.80  Aligned_cols=333  Identities=38%  Similarity=0.683  Sum_probs=281.3

Q ss_pred             ccCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhhhccccccchhccccccCcCcccCCC
Q 011450           41 AAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGL  120 (485)
Q Consensus        41 ~~~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~~~~~~~  120 (485)
                      ...+|||+||||+++||.+|||+|||+||++||||+|+++.|+++|++|++||+||+||+||+.||+||++++++++++.
T Consensus         2 ~~~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~   81 (377)
T PRK14298          2 ATTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQYSAE   81 (377)
T ss_pred             CCCCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCccccccccCcc
Confidence            34589999999999999999999999999999999998888999999999999999999999999999998876432211


Q ss_pred             C-CCCCC-CCchhhhhhhcCCCCCCCCCCCCCCCccccc---------CCC-------CCcccccccCCCCCCCCCCccc
Q 011450          121 S-NTSQG-VDPFELYSAFFGGSDGLFGGVGEAGGINFNF---------GNK-------GNFGLDIRCGGTGAKSSNCIQS  182 (485)
Q Consensus       121 ~-~~~~~-~dp~d~f~~fFgg~~g~fg~~g~~~g~~~~~---------~~~-------~~~~~di~C~GtG~~~~~~~~~  182 (485)
                      + .+..+ .++.|+|++|||+. +.....++..+.+...         ...       .....|..|+|+|++.+..+.+
T Consensus        82 ~~~~~~~~~~~~d~f~~~Fgg~-~~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~  160 (377)
T PRK14298         82 DIFRGADFGGFGDIFEMFFGGG-GRRGRMGPRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGTSPKR  160 (377)
T ss_pred             cccccCCcCcchhhhHhhhcCC-CccCCCCCCCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCCCCCCcccCCCCCCc
Confidence            0 00111 13457899999642 1100000000000000         000       0011233399999999988999


Q ss_pred             CCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEeecccccCCCceeeeceEEEEEcCCCCCCCCEEEEccccCCCC
Q 011450          183 CKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDR  262 (485)
Q Consensus       183 C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~dG~~Ir~~G~Gd~~~  262 (485)
                      |+.|+|+|.++..++.++|+++..++|+.|+|+|+++...|..|+|.|++.+.++++|.||||+++|++|+|+|+|+++.
T Consensus       161 C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~~~g~G~~~~  240 (377)
T PRK14298        161 CPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCSGTGKVRKTRKITVNVPAGADSGLRLKLSGEGEAGS  240 (377)
T ss_pred             CCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCCCCCCCCCccEEEEEEEEEecCCCCCCCCCEEEEecccCCCC
Confidence            99999999999888888888888899999999999999999999999999999999999999999999999999999987


Q ss_pred             CCCCCccEEEEEEeeccccccccccceEEEEEecchhhccCceEEEEccCCeEEEEeCCCCCCCCEEEEcCCCCCCCCCC
Q 011450          263 RRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNP  342 (485)
Q Consensus       263 ~g~~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~irl~g~G~P~~~~~  342 (485)
                      .++.+|||||+|+++||+.|+|+|+||+++++|+|.||++|+++.|+|+||++.|+||+|+++|++++|+|+|||..+. 
T Consensus       241 ~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~i~v~ip~g~~~g~~lri~g~G~p~~~~-  319 (377)
T PRK14298        241 PGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVPTLYGKVKMNIPPGTQTHSVFRLKDKGMPRLHG-  319 (377)
T ss_pred             CCCCCcCEEEEEEEecCCCeEEEcCcEEEEEEeCHHHHhCCCeEEEecCCCCEEEEeCCCcccCCEEEECCCCCCCCCC-
Confidence            7889999999999999999999999999999999999999999999999999899999999999999999999997654 


Q ss_pred             CCCccEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 011450          343 SVRGDHLFIVNVLIPKDISDPERALVEEIAFLK  375 (485)
Q Consensus       343 ~~rGDL~V~~~V~~P~~ls~~q~~ll~~l~~~~  375 (485)
                      ..+|||||+|+|++|+.|+++++++|++|+++.
T Consensus       320 ~~~GDL~V~~~V~~P~~ls~~~~~ll~~l~~~~  352 (377)
T PRK14298        320 HGKGDQLVKVIVKTPTKLTQEQKELLREFDELS  352 (377)
T ss_pred             CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence            468999999999999999999999999998754

>PRK14287 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=8.8e-74  Score=594.56  Aligned_cols=329  Identities=34%  Similarity=0.674  Sum_probs=280.0

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhhhccccccchhccccccCcCcccCCCCC
Q 011450           43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSN  122 (485)
Q Consensus        43 ~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~~~~~~~~~  122 (485)
                      .+|||++|||+++||.+|||+|||+||++||||+|++++|+++|++|++||++|+||+||+.||+||++++.++.++++.
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~~~~~~~   82 (371)
T PRK14287          3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGFGGGGA   82 (371)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcccccccCCCCC
Confidence            47999999999999999999999999999999999888899999999999999999999999999999887643211111


Q ss_pred             CCCCC-CchhhhhhhcCCCCCCCCC-CCCCCCcccc---------cCCC-------CCcccccccCCCCCCCCCCcccCC
Q 011450          123 TSQGV-DPFELYSAFFGGSDGLFGG-VGEAGGINFN---------FGNK-------GNFGLDIRCGGTGAKSSNCIQSCK  184 (485)
Q Consensus       123 ~~~~~-dp~d~f~~fFgg~~g~fg~-~g~~~g~~~~---------~~~~-------~~~~~di~C~GtG~~~~~~~~~C~  184 (485)
                        .++ ++.|+|+.|||+.+ +... ..+..+.+..         ....       .....|-.|+|+|++....+.+|+
T Consensus        83 --~~f~~~~d~f~~~fgg~~-~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~  159 (371)
T PRK14287         83 --GDFGGFSDIFDMFFGGGG-GRRNPNAPRQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETCS  159 (371)
T ss_pred             --ccccchHHHHHhhhcccc-CCCCCCCCCCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCCCCCCcccCCCCCCcccC
Confidence              111 34588999997421 1000 0000000000         0000       001122339999999888889999


Q ss_pred             CCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEeecccccCCCceeeeceEEEEEcCCCCCCCCEEEEccccCCCCCC
Q 011450          185 ACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRR  264 (485)
Q Consensus       185 ~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~dG~~Ir~~G~Gd~~~~g  264 (485)
                      .|+|+|.++..+++++|++++.++|+.|+|+|+++...|..|+|.|++.+.++++|.||||+.+|++|+|+|+|+++..+
T Consensus       160 ~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~~~  239 (371)
T PRK14287        160 HCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCGGKGKVRKRKKINVKVPAGIDHGQQLRVSGQGEAGVNG  239 (371)
T ss_pred             CCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccccccCCCCCCeeEEeeeEEEEEEECCcCCCCCEEEEccCCcCCCCC
Confidence            99999999988899999999889999999999999999999999999999999999999999999999999999998777


Q ss_pred             CCCccEEEEEEeeccccccccccceEEEEEecchhhccCceEEEEccCCeEEEEeCCCCCCCCEEEEcCCCCCCCCCCCC
Q 011450          265 SLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSV  344 (485)
Q Consensus       265 ~~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~irl~g~G~P~~~~~~~  344 (485)
                      +.+|||||+|+++||+.|+|+|+||+++++|||.+|++|+++.|+|+||+++|+||+|+++|++++|+|+|||..++ +.
T Consensus       240 ~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~i~v~ip~g~~~g~~~ri~g~G~p~~~~-~~  318 (371)
T PRK14287        240 GPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTLNGKVKLKIPAGTQTGTSFRLRGKGVPNVHG-RG  318 (371)
T ss_pred             CCCccEEEEEEEecCCCEEEecCCeEEEEeccHHHHhCCCEEEEEcCCCCEEEEECCCccCCcEEEEcCCCccCCCC-CC
Confidence            78999999999999999999999999999999999999999999999999899999999999999999999997654 46


Q ss_pred             CccEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 011450          345 RGDHLFIVNVLIPKDISDPERALVEEIAFLK  375 (485)
Q Consensus       345 rGDL~V~~~V~~P~~ls~~q~~ll~~l~~~~  375 (485)
                      +|||||+|+|.+|+.|+.+|+++|++|+++.
T Consensus       319 ~GDL~V~~~v~~P~~l~~~q~~ll~~l~~~~  349 (371)
T PRK14287        319 QGDQHVQVRVVTPKNLTEKEKELMREFAGMS  349 (371)
T ss_pred             CCCEEEEEEEEcCCCCCHHHHHHHHHHHhhh
Confidence            8999999999999999999999999998653

>PRK14276 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=3.2e-73  Score=592.27  Aligned_cols=331  Identities=34%  Similarity=0.672  Sum_probs=280.3

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhhhccccccchhccccccCcCcccCC--C
Q 011450           43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDG--L  120 (485)
Q Consensus        43 ~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~~~~~~--~  120 (485)
                      .+|||+||||+++||.+|||+|||+||++||||+|+++.|+++|++|++||+||+||+||++||+||+++++++.++  +
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~~~~~~~~~   82 (380)
T PRK14276          3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGANGGFGGGAG   82 (380)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccccCCCCCCCC
Confidence            57999999999999999999999999999999999988899999999999999999999999999999987643211  0


Q ss_pred             CCCC----CC-CCchhhhhhhcCCCCCCCCCCCCCCCccccc---------CCC-------CCcccccccCCCCCCCCCC
Q 011450          121 SNTS----QG-VDPFELYSAFFGGSDGLFGGVGEAGGINFNF---------GNK-------GNFGLDIRCGGTGAKSSNC  179 (485)
Q Consensus       121 ~~~~----~~-~dp~d~f~~fFgg~~g~fg~~g~~~g~~~~~---------~~~-------~~~~~di~C~GtG~~~~~~  179 (485)
                      +.++    .+ .++.|+|+.|||+.++......+..+.+...         ...       .....|-.|+|+|++.+..
T Consensus        83 ~~~~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~  162 (380)
T PRK14276         83 GFGGFDGSGGFGGFEDIFSSFFGGGGARRNPNAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHTCNGSGAKPGTS  162 (380)
T ss_pred             CCCCccccccccchhhHHHHHhCccccccCcCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeccccCCCCcCcccCCCCC
Confidence            1000    01 2445889999964211000000000000000         000       0011223399999998888


Q ss_pred             cccCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEeecccccCCCceeeeceEEEEEcCCCCCCCCEEEEccccC
Q 011450          180 IQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGN  259 (485)
Q Consensus       180 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~dG~~Ir~~G~Gd  259 (485)
                      +.+|+.|+|+|.++..+++++|++++.++|+.|+|+|+++...|..|+|.|++.+.++++|.||+|+.+|++|+|+|+|+
T Consensus       163 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~l~G~G~  242 (380)
T PRK14276        163 PVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCHGTGHEKQAHTVSVKIPAGVETGQQIRLQGQGE  242 (380)
T ss_pred             CccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccCCCCCCCCceEEEEEEEEEEEeCCCccCCcEEEEecccc
Confidence            89999999999998888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCccEEEEEEeeccccccccccceEEEEEecchhhccCceEEEEccCCeEEEEeCCCCCCCCEEEEcCCCCCCC
Q 011450          260 FDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDI  339 (485)
Q Consensus       260 ~~~~g~~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~irl~g~G~P~~  339 (485)
                      +...++.+|||+|+|+++||+.|+|+|+||+++++|||.||++|+++.|+|+||+++|+||+|+++|++++|+|+|||..
T Consensus       243 ~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tldg~i~v~ip~g~~~g~~~~i~g~G~p~~  322 (380)
T PRK14276        243 AGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVPTVHGDVELKIPAGTQTGKKFRLRGKGAPKL  322 (380)
T ss_pred             CCCCCCCCcCEEEEEEEEECcceeeecceEEEEEecCHHHHhCCCeEEEEcCCCcEEEEECCCCCCCCEEEECCCCcCCC
Confidence            98777788999999999999999999999999999999999999999999999998999999999999999999999986


Q ss_pred             CCCCCCccEEEEEEEEcCCCCChhHHHHHHHHHhh
Q 011450          340 NNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFL  374 (485)
Q Consensus       340 ~~~~~rGDL~V~~~V~~P~~ls~~q~~ll~~l~~~  374 (485)
                      +. ..+|||||+|+|.+|+.|+++|+++|++|++.
T Consensus       323 ~~-~~~GDL~V~~~v~~P~~l~~~q~~~l~~~~~~  356 (380)
T PRK14276        323 RG-GGNGDQHVTVNIVTPTKLNDAQKEALKAFAKA  356 (380)
T ss_pred             CC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            54 46899999999999999999999999999864

>PRK14278 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=6.8e-73  Score=589.21  Aligned_cols=331  Identities=36%  Similarity=0.608  Sum_probs=276.6

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhhhccccccchhccccccCcCcccCCCCC
Q 011450           43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSN  122 (485)
Q Consensus        43 ~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~~~~~~~~~  122 (485)
                      .+|||+||||+++||.+|||+|||+||++||||+|++++|+++|++|++||+||+||++|+.||+||++...++..+++.
T Consensus         2 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~~~~~~~~~g~   81 (378)
T PRK14278          2 ARDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAGGGGGGF   81 (378)
T ss_pred             CCCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCccccccCCCCCC
Confidence            47999999999999999999999999999999999988899999999999999999999999999998743221110110


Q ss_pred             CCCCC-CchhhhhhhcCCCCCCCCCC-CCCCCcccc--------c-CCCC-------CcccccccCCCCCCCCCCcccCC
Q 011450          123 TSQGV-DPFELYSAFFGGSDGLFGGV-GEAGGINFN--------F-GNKG-------NFGLDIRCGGTGAKSSNCIQSCK  184 (485)
Q Consensus       123 ~~~~~-dp~d~f~~fFgg~~g~fg~~-g~~~g~~~~--------~-~~~~-------~~~~di~C~GtG~~~~~~~~~C~  184 (485)
                      + .++ ++.|+|++|||+.++..+.. .+..+.+..        . ....       ....+..|+|+|++.+..+.+|+
T Consensus        82 ~-~~f~~~~d~f~~ffgg~g~~~~~~~~~~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~  160 (378)
T PRK14278         82 G-GGFGGLGDVFEAFFGGGAASRGPRGRVRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTCD  160 (378)
T ss_pred             C-cCcCchhHHHHHHhCCCCCCCCCccCCCCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCCCCcCccCCCCCCceecC
Confidence            1 111 34588999997421000000 000000000        0 0000       01122239999999988899999


Q ss_pred             CCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEeecccccCCCceeeeceEEEEEcCCCCCCCCEEEEccccCCCCCC
Q 011450          185 ACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRR  264 (485)
Q Consensus       185 ~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~dG~~Ir~~G~Gd~~~~g  264 (485)
                      .|+|+|.++..+++.+|++++.++|+.|+|+|+++...|..|+|.|++.+.++++|.||||+.+|++|+|+|+|++++.+
T Consensus       161 ~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~  240 (378)
T PRK14278        161 TCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHECAGDGRVRARREITVKIPAGVGDGMRIRLAAQGEVGPGG  240 (378)
T ss_pred             CccCceEEEEEEeccceeEEEEEECCCCCccceeeCCCCCCCCCceeEecceEEEEEECCCCCCCcEEEEccCcCCCCCC
Confidence            99999999888888889998889999999999999999999999999999999999999999999999999999998877


Q ss_pred             CCCccEEEEEEeeccccccccccceEEEEEecchhhccCceEEEEcc-CCeEEEEeCCCCCCCCEEEEcCCCCCCCCCCC
Q 011450          265 SLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETV-EGMKDLRIPSGVQPGDTVKLQQMGVPDINNPS  343 (485)
Q Consensus       265 ~~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~V~tl-dG~~~l~Ip~g~q~G~~irl~g~G~P~~~~~~  343 (485)
                      +.+|||+|+|+++||+.|+|+|+||+++++|+|.+|++|+++.|+|+ ++.+.|+||+++++|++++|+|+|||..+. .
T Consensus       241 ~~~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld~~~i~v~ip~g~~~g~~lrl~g~G~p~~~~-~  319 (378)
T PRK14278        241 GPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAILDGPSEITIPPGTQPGSVITLRGRGMPHLRS-G  319 (378)
T ss_pred             CCCCCEEEEEEECcCCCEEEcCCCEEEEEecCHHHHhcCCeEEEecCCCCeEEEEeCCCcCCCcEEEECCCCCCCCCC-C
Confidence            88999999999999999999999999999999999999999999999 556899999999999999999999997653 4


Q ss_pred             CCccEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 011450          344 VRGDHLFIVNVLIPKDISDPERALVEEIAFLK  375 (485)
Q Consensus       344 ~rGDL~V~~~V~~P~~ls~~q~~ll~~l~~~~  375 (485)
                      .+|||||+|+|.||+.|+++|+++|++|+.+.
T Consensus       320 ~~GDL~V~~~V~~P~~Ls~~qk~~l~~~~~~~  351 (378)
T PRK14278        320 GRGDLHAHVEVVVPTRLDHEDIELLRELKALR  351 (378)
T ss_pred             CCCCEEEEEEEEcCCCCCHHHHHHHHHHHhhc
Confidence            68999999999999999999999999998653

>PRK14280 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=9.8e-73  Score=587.86  Aligned_cols=332  Identities=38%  Similarity=0.703  Sum_probs=280.7

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhhhccccccchhccccccCcCcccCCCC-
Q 011450           43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLS-  121 (485)
Q Consensus        43 ~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~~~~~~~~-  121 (485)
                      .+|||+||||+++||.+|||+|||+||++||||+|+++.|+++|++|++||+|||||.+|++||+||+++++++.++++ 
T Consensus         3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~~~   82 (376)
T PRK14280          3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQGFGGGGF   82 (376)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCccccccCcCCCCC
Confidence            4799999999999999999999999999999999998889999999999999999999999999999988764321111 


Q ss_pred             C--C-CCCCCchhhhhhhcCCCCCCCCCCCCCCCccccc---------CCCC-------CcccccccCCCCCCCCCCccc
Q 011450          122 N--T-SQGVDPFELYSAFFGGSDGLFGGVGEAGGINFNF---------GNKG-------NFGLDIRCGGTGAKSSNCIQS  182 (485)
Q Consensus       122 ~--~-~~~~dp~d~f~~fFgg~~g~fg~~g~~~g~~~~~---------~~~~-------~~~~di~C~GtG~~~~~~~~~  182 (485)
                      +  + ..++++.|+|+.|||+.++......+..+.+...         ....       ....|..|+|+|+..+..+.+
T Consensus        83 ~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~  162 (376)
T PRK14280         83 GGGDFGGGFGFEDIFSSFFGGGGRRRDPNAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGTSKET  162 (376)
T ss_pred             CCCCccccccchhhHHHHhCCccccCcccccccccCEEEEEEEEHHHHhCCceeEEEEeeeccCCCCCCcccCCCCCCcc
Confidence            0  0 0123456889999964210000000000000000         0000       011222399999998888899


Q ss_pred             CCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEeecccccCCCceeeeceEEEEEcCCCCCCCCEEEEccccCCCC
Q 011450          183 CKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDR  262 (485)
Q Consensus       183 C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~dG~~Ir~~G~Gd~~~  262 (485)
                      |+.|+|+|.++..+++++|++++.++|+.|+|+|+++...|..|+|.|++.+.++++|.||+|+.+|++|+|+|+|++..
T Consensus       163 C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~i~l~G~G~~~~  242 (376)
T PRK14280        163 CSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCHGKGKVRKRKKINVKIPAGVDNGQQIRVSGEGEPGV  242 (376)
T ss_pred             CCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecCCCCCCCCceEEEEEEEEEEEeCCCCcCCcEEEEcccccCCC
Confidence            99999999998888889999988899999999999999999999999999999999999999999999999999999987


Q ss_pred             CCCCCccEEEEEEeeccccccccccceEEEEEecchhhccCceEEEEccCCeEEEEeCCCCCCCCEEEEcCCCCCCCCCC
Q 011450          263 RRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNP  342 (485)
Q Consensus       263 ~g~~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~irl~g~G~P~~~~~  342 (485)
                      .++.+|||||+|+++||+.|+|+|+||+++++|||.||++|+++.|+|+||++.|+||+++++|++++|+|+|||...+ 
T Consensus       243 ~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~i~v~ip~g~~~g~~~~i~g~G~p~~~~-  321 (376)
T PRK14280        243 NGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVPTLHGKVKLKIPAGTQTGTQFRLKGKGVPNVRG-  321 (376)
T ss_pred             CCCCCcCEEEEEEEecCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCceEEEEECCCCCCCcEEEEcCCCCCCCCC-
Confidence            7788999999999999999999999999999999999999999999999999899999999999999999999997654 


Q ss_pred             CCCccEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 011450          343 SVRGDHLFIVNVLIPKDISDPERALVEEIAFLK  375 (485)
Q Consensus       343 ~~rGDL~V~~~V~~P~~ls~~q~~ll~~l~~~~  375 (485)
                      ..+|||||+|+|.+|+.|+++|+++|++|+++.
T Consensus       322 ~~~GDL~v~~~v~~P~~Ls~~q~~~l~~l~~~~  354 (376)
T PRK14280        322 YGQGDQYVVVRVVTPTKLTDRQKELLREFAELS  354 (376)
T ss_pred             CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence            468999999999999999999999999998653

>PRK14288 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=9.9e-73  Score=586.31  Aligned_cols=320  Identities=33%  Similarity=0.590  Sum_probs=263.3

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCC-CccHHHHHHHHHHHHhhhccccccchhccccccCcCcccCCCC
Q 011450           43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLS  121 (485)
Q Consensus        43 ~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~-~~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~~~~~~~~  121 (485)
                      .+|||+||||+++||.+|||+|||+||++||||+|+ ++.|+++|++|++||+||+||+||++||+||++++.++.++ +
T Consensus         2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~~~~~~-~   80 (369)
T PRK14288          2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLNQAGAS-Q   80 (369)
T ss_pred             CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccCCCC-c
Confidence            589999999999999999999999999999999998 57799999999999999999999999999999877632111 0


Q ss_pred             CCCCCCCchh----hhhhhcCCCCCCCCCC--CCCCCcccccC---------CCC-------CcccccccCCCCCCCCCC
Q 011450          122 NTSQGVDPFE----LYSAFFGGSDGLFGGV--GEAGGINFNFG---------NKG-------NFGLDIRCGGTGAKSSNC  179 (485)
Q Consensus       122 ~~~~~~dp~d----~f~~fFgg~~g~fg~~--g~~~g~~~~~~---------~~~-------~~~~di~C~GtG~~~~~~  179 (485)
                       ... .++|+    +|+.|||+.  +.+..  .+..+.+....         ...       ....+-.|+|+|++.. .
T Consensus        81 -~~~-~~~f~~~~~~F~~~fg~g--~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~-~  155 (369)
T PRK14288         81 -SDF-SDFFEDLGSFFEDAFGFG--ARGSKRQKSSIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTGAKDK-A  155 (369)
T ss_pred             -ccc-ccchhhHHHHHHhhcCCC--CcccCcCCCCCCCCeeEeccccHHHHhCCeEEEEEEEeeccCCCCCCcccCCC-C
Confidence             111 13333    444444321  00000  00000000000         000       0012223999999875 6


Q ss_pred             cccCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEeecccccCCCceeeeceEEEEEcCCCCCCCCEEEEccccC
Q 011450          180 IQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGN  259 (485)
Q Consensus       180 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~dG~~Ir~~G~Gd  259 (485)
                      +.+|+.|+|+|.+...+    |++++.++|+.|+|+|+++...|..|+|.|++.+.++++|.||||+.+|++|+|+|+|+
T Consensus       156 ~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~~i~l~g~G~  231 (369)
T PRK14288        156 LETCKQCNGQGQVFMRQ----GFMSFAQTCGACQGKGKIIKTPCQACKGKTYILKDEEIDAIIPEGIDDQNRMVLKNKGN  231 (369)
T ss_pred             CcCCCCCCCCcEEEEEe----ceEEEEEecCCCCCCceEccccCccCCCcceEEEEEEEEEecCCCCCCCCEEEEccCcc
Confidence            78999999999876543    66777789999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCccEEEEEEeeccccccccccceEEEEEecchhhccCceEEEEccCCe-EEEEeCCCCCCCCEEEEcCCCCCC
Q 011450          260 FDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGM-KDLRIPSGVQPGDTVKLQQMGVPD  338 (485)
Q Consensus       260 ~~~~g~~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~-~~l~Ip~g~q~G~~irl~g~G~P~  338 (485)
                      +.. ++.+|||+|+|++++|+.|+|+|+||+++++|||.|||+|+++.|+||||+ ++|+||+++++|++++|+|+|||.
T Consensus       232 ~~~-~~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~v~tLdG~~l~i~i~~~~~~g~~~~i~g~G~p~  310 (369)
T PRK14288        232 EYE-KGKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRNARDRQTFAFRNEGVKH  310 (369)
T ss_pred             CCC-CCCCCCEEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEEeecCCCCEEEEEeCCCCCCCcEEEEcCCCCCC
Confidence            865 578999999999999999999999999999999999999999999999997 799999999999999999999997


Q ss_pred             CCCCCCCccEEEEEEEEcCCCCChhHHHHHHHHHhh
Q 011450          339 INNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFL  374 (485)
Q Consensus       339 ~~~~~~rGDL~V~~~V~~P~~ls~~q~~ll~~l~~~  374 (485)
                      .+. ..+|||||+|+|.+|+.|+++|+++|++|+..
T Consensus       311 ~~~-~~~GDL~v~~~v~~P~~ls~~q~~~l~~~~~~  345 (369)
T PRK14288        311 PES-SYRGSLIVELQVIYPKSLNKEQQELLEKLHAS  345 (369)
T ss_pred             CCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            653 46899999999999999999999999999875

>PRK14277 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.4e-72  Score=588.57  Aligned_cols=324  Identities=37%  Similarity=0.694  Sum_probs=278.1

Q ss_pred             cCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCC-CccHHHHHHHHHHHHhhhccccccchhccccccCcCcccC-C
Q 011450           42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYD-G  119 (485)
Q Consensus        42 ~~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~-~~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~~~~~-~  119 (485)
                      +.+|||+||||+++||.+|||+|||+||++||||+|+ ++.|+++|++|++||+||+||.+|+.||+||+++++.+.. +
T Consensus         3 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~   82 (386)
T PRK14277          3 AKKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFDPGGFGQ   82 (386)
T ss_pred             CCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhcccccccccccc
Confidence            4589999999999999999999999999999999998 4678999999999999999999999999999988763211 0


Q ss_pred             C----CC---CCCC---CCchhhhhhhcCCCCCCCCCCCCCCCcccccCCCCCccc------------------------
Q 011450          120 L----SN---TSQG---VDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGL------------------------  165 (485)
Q Consensus       120 ~----~~---~~~~---~dp~d~f~~fFgg~~g~fg~~g~~~g~~~~~~~~~~~~~------------------------  165 (485)
                      +    ++   ++.+   .++.|+|++||+++   ||+.+...      ...+.++.                        
T Consensus        83 ~~~~~~g~~~~~~~~~~~~~~d~f~~~F~~~---fgg~~~~~------~~~~~kg~di~~~l~vtLee~~~G~~~~v~~~  153 (386)
T PRK14277         83 GGFGQGGFGGGGFDFDFGGFGDIFEDIFGDF---FGTGRRRA------ETGPQKGADIRYDLELTFEEAAFGTEKEIEVE  153 (386)
T ss_pred             CCcCCCCccccCccccccchhHHHHHhhccc---ccCCCcCC------CCCCCCCCCEEEEEEEEHHHHhCCeEEEEEEE
Confidence            0    00   0001   12346788888642   22100000      00011122                        


Q ss_pred             ----ccccCCCCCCCCCCcccCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEeecccccCCCceeeeceEEEEE
Q 011450          166 ----DIRCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVV  241 (485)
Q Consensus       166 ----di~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~  241 (485)
                          |..|+|+|......+.+|+.|+|+|.++..+++++|++++.++|+.|+|+|+++...|..|+|.|++.+.++++|.
T Consensus       154 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~  233 (386)
T PRK14277        154 RFEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCGGTGRIRRRRKIKVN  233 (386)
T ss_pred             eeccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccCCCCCCCCCcEEeeeeEEEEe
Confidence                2229999999888899999999999999888999999998899999999999999999999999999999999999


Q ss_pred             cCCCCCCCCEEEEccccCCCCCCCCCccEEEEEEeeccccccccccceEEEEEecchhhccCceEEEEccCCeEEEEeCC
Q 011450          242 IPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPS  321 (485)
Q Consensus       242 IP~Gv~dG~~Ir~~G~Gd~~~~g~~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~  321 (485)
                      ||+|+++|++|+|+|+|++...++.+|||+|+|++++|+.|+|+|+||+++++|||.||++|+++.|+|+||+++|+||+
T Consensus       234 Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~  313 (386)
T PRK14277        234 IPAGIDDGQMITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEIPTLDGKVKFTIPE  313 (386)
T ss_pred             cCCCccCCcEEEEccccccCCCCCCCccEEEEEEEecCCCeEEecCCEEEEEEcCHHHHhCCCEEEEEcCCCCEEEEECC
Confidence            99999999999999999987777789999999999999999999999999999999999999999999999998999999


Q ss_pred             CCCCCCEEEEcCCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 011450          322 GVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK  375 (485)
Q Consensus       322 g~q~G~~irl~g~G~P~~~~~~~rGDL~V~~~V~~P~~ls~~q~~ll~~l~~~~  375 (485)
                      ++++|++++|+|+|||..+. ..+|||||+|+|.||+.|+++|+++|++|+++.
T Consensus       314 g~~~g~~~ri~g~G~p~~~~-~~~GDL~v~~~V~~P~~Ls~~qk~~l~~l~~~~  366 (386)
T PRK14277        314 GTQTGTKFRLRGKGIPHLRG-RGRGDQIVKVYIEVPKKLTEKQKELLREFEKLS  366 (386)
T ss_pred             CCCCCCEEEECCCCCCCCCC-CCCCCEEEEEEEEeCCCCCHHHHHHHHHHHhhc
Confidence            99999999999999997654 368999999999999999999999999998653

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=100.00  E-value=8.3e-73  Score=593.70  Aligned_cols=340  Identities=30%  Similarity=0.557  Sum_probs=275.9

Q ss_pred             cccccCCCCCcccccccccccCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhhhccccc
Q 011450           22 FKWNYCSGNNRSHRRGMIRAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEK  101 (485)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYevLsDp~k  101 (485)
                      |.|+-+.+-+..|....-.+..+|||++|||+++||.+|||+|||+||++||||+|++   .++|++|++||+|||||+|
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~---~e~F~~i~~AYevLsD~~k   82 (421)
T PTZ00037          6 FPFDGMPGGGFDGGRRKREVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD---PEKFKEISRAYEVLSDPEK   82 (421)
T ss_pred             CCcccccCCCCCCCcccccccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch---HHHHHHHHHHHHHhccHHH
Confidence            4566555434332222222336899999999999999999999999999999999953   5899999999999999999


Q ss_pred             cchhccccccCcCcccCCCCCCCCCCCchhhhhhhcCCCCCCCCCCCCCCCcccc---------cCCCC-------Cccc
Q 011450          102 RSVYDRFGEAGITGEYDGLSNTSQGVDPFELYSAFFGGSDGLFGGVGEAGGINFN---------FGNKG-------NFGL  165 (485)
Q Consensus       102 R~~YD~~G~~~~~~~~~~~~~~~~~~dp~d~f~~fFgg~~g~fg~~g~~~g~~~~---------~~~~~-------~~~~  165 (485)
                      |+.||+||++++.++++       +.++.++|+.|||+...  .. +...+.+..         .....       ....
T Consensus        83 R~~YD~~G~~~~~~~~~-------~~d~~d~f~~~Fggg~~--~~-~~~rg~di~~~l~vtLee~~~G~~~~i~~~r~~~  152 (421)
T PTZ00037         83 RKIYDEYGEEGLEGGEQ-------PADASDLFDLIFGGGRK--PG-GKKRGEDIVSHLKVTLEQIYNGAMRKLAINKDVI  152 (421)
T ss_pred             HHHHhhhcchhcccCCC-------CcchhhhHHHhhccccc--cc-cccCCCCEEEEeeeeHHHHhCCCceEEEeecccc
Confidence            99999999987753211       23567899999974210  00 000010000         00000       1122


Q ss_pred             ccccCCCCCCCCCCcccCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEe--ecccccCCCceeeeceEEEEEcC
Q 011450          166 DIRCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIII--DHCRRCGGNGEVQSKRSMKVVIP  243 (485)
Q Consensus       166 di~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~--~~C~~C~G~G~v~~~k~l~V~IP  243 (485)
                      |-.|+|+|++.. .+.+|+.|+|+|.++...++.+..+++.++|+.|+|+|+++.  ..|..|+|.|++.+.++++|.||
T Consensus       153 C~~C~G~G~~~~-~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~~~~~l~V~Ip  231 (421)
T PTZ00037        153 CANCEGHGGPKD-AFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNID  231 (421)
T ss_pred             ccccCCCCCCCC-CCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccccccCCcCCCcceeeeeeEEEEeeC
Confidence            334999998654 678999999999977766655423345679999999999986  67999999999999999999999


Q ss_pred             CCCCCCCEEEEccccCCCCCCCCCccEEEEEEeeccccccccccceEEEEEecchhhccCceEEEEccCCe-EEEEeCCC
Q 011450          244 PGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGM-KDLRIPSG  322 (485)
Q Consensus       244 ~Gv~dG~~Ir~~G~Gd~~~~g~~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~-~~l~Ip~g  322 (485)
                      ||+.+|++|+|+|+|++.+ ++.||||||+|+++||+.|+|+|+||+++++|+|.|||+|+++.|+||||+ +.|+||+|
T Consensus       232 ~G~~dG~~I~~~G~Gd~~~-~~~pGDLiv~I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~i~I~tLdG~~l~I~ip~g  310 (421)
T PTZ00037        232 KGVPNQHKITFHGEADEKP-NEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDGRKLLVNTPPG  310 (421)
T ss_pred             CCCCCCcEEEEecccCCCC-CCCCCcEEEEEEecCCCCcEEeCCeEEEEEeCCHHHHhcCCEEEeeCCCCCeEEEEeCCC
Confidence            9999999999999999865 578999999999999999999999999999999999999999999999997 78999998


Q ss_pred             --CCCCCEEEEcCCCCCCCCCCCCCccEEEEEEEEcC--CCCChhHHHHHHHHHhhcC
Q 011450          323 --VQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIP--KDISDPERALVEEIAFLKS  376 (485)
Q Consensus       323 --~q~G~~irl~g~G~P~~~~~~~rGDL~V~~~V~~P--~~ls~~q~~ll~~l~~~~~  376 (485)
                        ++||++++|+|+|||..++++.+|||||+|+|.||  +.|+++|+++|++|+....
T Consensus       311 ~vt~pg~~~~I~geGmP~~~~~~~rGDL~V~~~V~~P~~~~Ls~~qk~ll~~l~~~~~  368 (421)
T PTZ00037        311 EVVKPGDIKVINNEGMPTYKSPFKKGNLYVTFEVIFPVDRKFTNEEKEILKSLFPQNP  368 (421)
T ss_pred             cccCCCcEEEeCCCCcccCCCCCCCCCEEEEEEEEcCCCCCCCHHHHHHHHHhccCCC
Confidence              99999999999999987655578999999999999  9999999999999986533

>PRK14286 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=3.1e-72  Score=583.20  Aligned_cols=328  Identities=36%  Similarity=0.695  Sum_probs=273.3

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCC-CccHHHHHHHHHHHHhhhccccccchhccccccCcCcccCCCC
Q 011450           43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLS  121 (485)
Q Consensus        43 ~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~-~~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~~~~~~~~  121 (485)
                      .+|||++|||+++||.+|||+|||+||++||||+|+ +++|+++|++|++||+||+||++|+.||+||+++++.+.++.+
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~   82 (372)
T PRK14286          3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGAGGFG   82 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhccccCCCC
Confidence            479999999999999999999999999999999997 4678999999999999999999999999999988764321111


Q ss_pred             CCC-CC-----CCchhhhhhhcCCCCCCCCCCC----CCCCccccc---------CCC-------CCcccccccCCCCCC
Q 011450          122 NTS-QG-----VDPFELYSAFFGGSDGLFGGVG----EAGGINFNF---------GNK-------GNFGLDIRCGGTGAK  175 (485)
Q Consensus       122 ~~~-~~-----~dp~d~f~~fFgg~~g~fg~~g----~~~g~~~~~---------~~~-------~~~~~di~C~GtG~~  175 (485)
                      .++ .+     .++.|+|+.|||+.+++....+    +..+.+...         ...       .....|-.|+|+|++
T Consensus        83 ~~~~~~~~~~~~~~~d~f~~ffgg~~~~~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~  162 (372)
T PRK14286         83 QGAYTDFSDIFGDFGDIFGDFFGGGRGGGSGGGRRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCNGSGAS  162 (372)
T ss_pred             CCCcccccccccchhhHHHHhhCCCccCCCcccccCCCCCCCCeeEEEEEEHHHHhCCeeEEEEeeccccCCCCcCCCcC
Confidence            000 01     1445889999974211100000    000000000         000       001122239999999


Q ss_pred             CCCCcccCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEeecccccCCCceeeeceEEEEEcCCCCCCCCEEEEc
Q 011450          176 SSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIR  255 (485)
Q Consensus       176 ~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~dG~~Ir~~  255 (485)
                      ....+.+|+.|+|+|.++..+    |++++.++|+.|+|+|+++...|..|+|.|++.+.++++|.||||+.+|++|+|+
T Consensus       163 ~~~~~~~C~~C~G~G~v~~~~----G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~  238 (372)
T PRK14286        163 KGSSPTTCPDCGGSGQIRRTQ----GFFSVATTCPTCRGKGTVISNPCKTCGGQGLQEKRRTINIKIPPGVETGSRLKVS  238 (372)
T ss_pred             CCCCCccCCCCcCeEEEEEEe----ceEEEEEeCCCCCceeeEecccCCCCCCCcEEecceEEEEEECCCCCCCCEEEEC
Confidence            888889999999999876542    7777788999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCCCCccEEEEEEeeccccccccccceEEEEEecchhhccCceEEEEccCCe-EEEEeCCCCCCCCEEEEcCC
Q 011450          256 GEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGM-KDLRIPSGVQPGDTVKLQQM  334 (485)
Q Consensus       256 G~Gd~~~~g~~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~-~~l~Ip~g~q~G~~irl~g~  334 (485)
                      |+|++...+..+|||||+|+++||+.|+|+|+||+++++|+|.+|++|+++.|+|+||+ ++|+||+++++|++++|+|+
T Consensus       239 g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~i~v~ip~g~~~g~~~ri~G~  318 (372)
T PRK14286        239 GEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKKAKMKIPEGTESGQVFRLKGH  318 (372)
T ss_pred             CccccCCCCCCCceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEEEEeCCCCCEEEEEeCCccCCCcEEEECCC
Confidence            99999877778899999999999999999999999999999999999999999999997 79999999999999999999


Q ss_pred             CCCCCCCCCCCccEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 011450          335 GVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK  375 (485)
Q Consensus       335 G~P~~~~~~~rGDL~V~~~V~~P~~ls~~q~~ll~~l~~~~  375 (485)
                      |||..+. ..+|||||+|+|.||+.|+++|+++|++|++..
T Consensus       319 G~P~~~~-~~~GDL~V~~~V~~P~~Ls~~qk~~l~~l~~~~  358 (372)
T PRK14286        319 GMPYLGA-YGKGDQHVIVKIEIPKKITRRQRELIEEFARES  358 (372)
T ss_pred             CCCCCCC-CCCCcEEEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            9997654 468999999999999999999999999999865

>PRK14297 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.1e-71  Score=580.84  Aligned_cols=332  Identities=35%  Similarity=0.649  Sum_probs=279.1

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCC-ccHHHHHHHHHHHHhhhccccccchhccccccCcCcccCCC-
Q 011450           43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS-PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGL-  120 (485)
Q Consensus        43 ~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~-~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~~~~~~~-  120 (485)
                      .+|||++|||+++||.+|||+|||+||++||||+|+. +.|+++|++|++||+||+||++|++||+||+++++++++.+ 
T Consensus         3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~~~~~~~~   82 (380)
T PRK14297          3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAGGFGS   82 (380)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccccccCCCCC
Confidence            4799999999999999999999999999999999974 67899999999999999999999999999998876321111 


Q ss_pred             -CCCCCC----CCchhhhhhhcCCCCCCCCC--CCCCCCccccc---------CCC-------CCcccccccCCCCCCCC
Q 011450          121 -SNTSQG----VDPFELYSAFFGGSDGLFGG--VGEAGGINFNF---------GNK-------GNFGLDIRCGGTGAKSS  177 (485)
Q Consensus       121 -~~~~~~----~dp~d~f~~fFgg~~g~fg~--~g~~~g~~~~~---------~~~-------~~~~~di~C~GtG~~~~  177 (485)
                       +.++..    .++.|+|++|||+..++.+.  ..+..+.+...         ...       .....|..|.|+|...+
T Consensus        83 ~~~~~~~~~~~~~~~d~f~~~fgg~~g~~~~~~~~~~kg~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~  162 (380)
T PRK14297         83 GGFGGFDFSDMGGFGDIFDSFFGGGFGSSSRRRNGPQRGADIEYTINLTFEEAVFGVEKEISVTRNENCETCNGTGAKPG  162 (380)
T ss_pred             CCCCCcCcccccchhHHHHHHhccCccccccccCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeeeccCCCcccccccCC
Confidence             101111    13458899999742111000  00000000000         000       00112223999999988


Q ss_pred             CCcccCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEeecccccCCCceeeeceEEEEEcCCCCCCCCEEEEccc
Q 011450          178 NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGE  257 (485)
Q Consensus       178 ~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~dG~~Ir~~G~  257 (485)
                      ....+|+.|+|+|.++..+++++|++++..+|+.|+|+|+++...|..|+|.|++.+.++++|.||||+.+|++|+|+|+
T Consensus       163 ~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~I~l~g~  242 (380)
T PRK14297        163 TSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCHGKGKVRKNRKIKVNVPAGVDTGNVIPLRGQ  242 (380)
T ss_pred             CcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCCCCCCCCCCeEEEeEeEEEEEeCCCCCCCcEEEEecC
Confidence            88899999999999988888899999888999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCccEEEEEEeeccccccccccceEEEEEecchhhccCceEEEEccCCeEEEEeCCCCCCCCEEEEcCCCCC
Q 011450          258 GNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVP  337 (485)
Q Consensus       258 Gd~~~~g~~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~irl~g~G~P  337 (485)
                      |+++..+..+|||||+|++++|+.|+|+|+||+++++|+|.||++|+++.|+|+||+++|+||+|+++|++++|+|+|||
T Consensus       243 G~~~~~~~~~GDL~v~v~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~~~v~ip~g~~~g~~~ri~g~G~p  322 (380)
T PRK14297        243 GEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTVDGEVKYEVPAGTQPGTVFRLKGKGVP  322 (380)
T ss_pred             ccCCCCCCCCccEEEEEEEcCCCCEEEeCCCEEEEEEeCHHHHhCCCcEEEEcCCCcEEEEECCCcCCCCEEEEcCCCcC
Confidence            99987778899999999999999999999999999999999999999999999999989999999999999999999999


Q ss_pred             CCCCCCCCccEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 011450          338 DINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK  375 (485)
Q Consensus       338 ~~~~~~~rGDL~V~~~V~~P~~ls~~q~~ll~~l~~~~  375 (485)
                      ..+. +.+|||||+|+|.||+.|+++|+++|++|+...
T Consensus       323 ~~~~-~~~GDL~v~~~v~~P~~ls~~q~~~l~~~~~~~  359 (380)
T PRK14297        323 RVNS-TGRGNQYVTVIVDIPKKLNSKQKEALTMFMEAS  359 (380)
T ss_pred             CCCC-CCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence            7653 468999999999999999999999999998764

>PRK14284 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.4e-71  Score=581.84  Aligned_cols=327  Identities=36%  Similarity=0.679  Sum_probs=268.5

Q ss_pred             CCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCC-ccHHHHHHHHHHHHhhhccccccchhccccccCcCcccCC-CC
Q 011450           44 TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS-PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDG-LS  121 (485)
Q Consensus        44 ~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~-~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~~~~~~-~~  121 (485)
                      .|||+||||+++||++|||+|||+||++||||+|++ +.|+++|++|++||+||+||+||+.||+||++++..+.++ ++
T Consensus         1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~g~~~~~~   80 (391)
T PRK14284          1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPFAGAGGFGG   80 (391)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccccccccccCCcCC
Confidence            489999999999999999999999999999999984 6789999999999999999999999999999876422110 00


Q ss_pred             CCCCC---------------C-CchhhhhhhcCCCCCCCCCCC----CCCCccccc---------CCC-------CCccc
Q 011450          122 NTSQG---------------V-DPFELYSAFFGGSDGLFGGVG----EAGGINFNF---------GNK-------GNFGL  165 (485)
Q Consensus       122 ~~~~~---------------~-dp~d~f~~fFgg~~g~fg~~g----~~~g~~~~~---------~~~-------~~~~~  165 (485)
                      .+..+               + ...|+|+.||++.++.|++..    +..+.+...         ...       .....
T Consensus        81 ~g~~~~~~~~~~~~~~f~~~~~~~~d~f~~~fgg~g~~~~~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~  160 (391)
T PRK14284         81 AGMGNMEDALRTFMGAFGGEFGGGGSFFEGLFGGLGEAFGMRGGPAGARQGASKKVHITLSFEEAAKGVEKELLVSGYKS  160 (391)
T ss_pred             CCcCcccchhhhccccccccccccccchhhhccCccccccccccCCCcCCCCCeEEEEEEEHHHHhCCeeEEEEEeeecc
Confidence            00000               0 013566677754211111100    000000000         000       00112


Q ss_pred             ccccCCCCCCCCCCcccCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEeecccccCCCceeeeceEEEEEcCCC
Q 011450          166 DIRCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPG  245 (485)
Q Consensus       166 di~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~G  245 (485)
                      |-.|+|+|++.+..+.+|+.|+|+|.++..+    |++++.++|+.|+|+|+++.+.|..|+|.|++.+.++++|.||||
T Consensus       161 C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~----G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G  236 (391)
T PRK14284        161 CDACSGSGANSSQGIKVCDRCKGSGQVVQSR----GFFSMASTCPECGGEGRVITDPCSVCRGQGRIKDKRSVHVHIPAG  236 (391)
T ss_pred             CCCCcccccCCCCCCeecCccCCeeEEEEEe----ceEEEEEECCCCCCCCcccCCcCCCCCCcceecceEEEEEEECCC
Confidence            2239999999988899999999999877543    677778899999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEccccCCCCCCCCCccEEEEEEeeccccccccccceEEEEEecchhhccCceEEEEccC--CeEEEEeCCCC
Q 011450          246 VSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVE--GMKDLRIPSGV  323 (485)
Q Consensus       246 v~dG~~Ir~~G~Gd~~~~g~~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~V~tld--G~~~l~Ip~g~  323 (485)
                      +.+|++|+|+|+|+++..++.||||||+|+++||+.|+|+|+||+++++|||.+|++|++++|+|++  +.++|+||+|+
T Consensus       237 ~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tld~g~~i~v~Ip~g~  316 (391)
T PRK14284        237 VDSGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIPTLLKEGTCRLTIPEGI  316 (391)
T ss_pred             CCCCCEEEEeccccCCCCCCCCCCEEEEEEEecCCCceeecCCEEEEEEecHHHHhCCCeEEEeecCCCcEEEEEECCcc
Confidence            9999999999999999888899999999999999999999999999999999999999999999999  56899999999


Q ss_pred             CCCCEEEEcCCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 011450          324 QPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK  375 (485)
Q Consensus       324 q~G~~irl~g~G~P~~~~~~~rGDL~V~~~V~~P~~ls~~q~~ll~~l~~~~  375 (485)
                      ++|++++|+|+|||..++ ..+|||||+|+|.+|+.|+++|+++|++|+++.
T Consensus       317 ~~g~~~~i~g~G~p~~~~-~~~GDL~V~~~v~~P~~l~~~q~~ll~~l~~~~  367 (391)
T PRK14284        317 QSGTILKVRGQGFPNVHG-KGRGDLLVRISVETPQNLSEEQKELLRQFAATE  367 (391)
T ss_pred             CCCeEEEECCCCCCCCCC-CCCCcEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence            999999999999997654 468999999999999999999999999998653

>PRK14281 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=8.3e-71  Score=576.90  Aligned_cols=329  Identities=37%  Similarity=0.705  Sum_probs=275.1

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCC-ccHHHHHHHHHHHHhhhccccccchhccccccCcCcccC--C
Q 011450           43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS-PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYD--G  119 (485)
Q Consensus        43 ~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~-~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~~~~~--~  119 (485)
                      .+|||+||||+++|+.+|||+|||+||++||||+|++ +.|+++|++|++||++|+||.+|+.||+||++++.+...  +
T Consensus         2 ~~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~~~~~~~~   81 (397)
T PRK14281          2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAASGG   81 (397)
T ss_pred             CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhccccccCC
Confidence            4799999999999999999999999999999999974 678899999999999999999999999999988763211  1


Q ss_pred             CCC-CCCCCCchhh---hhhhcCCCCCCCCCC------CCCCCcccccC-CCCCcccccc--------------------
Q 011450          120 LSN-TSQGVDPFEL---YSAFFGGSDGLFGGV------GEAGGINFNFG-NKGNFGLDIR--------------------  168 (485)
Q Consensus       120 ~~~-~~~~~dp~d~---f~~fFgg~~g~fg~~------g~~~g~~~~~~-~~~~~~~di~--------------------  168 (485)
                      +++ +..+.+..++   |++|||+..+ +++.      +..++...... ..+.++.|+.                    
T Consensus        82 ~~~~~~~~~~~~d~f~~f~~~Fgg~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~  160 (397)
T PRK14281         82 GPGYGGGGGDFNDIFSAFNDMFGGGAR-RGGGSPFGFEDVFGGGGRRRRASAGIPGTDLKIRLKLTLEEIAKGVEKTLKI  160 (397)
T ss_pred             CCCCCcCCCCHHHHHHHHHHHhCCCcc-cccccccccccccCCCcccccccCCCCCCCEEEEEEeEHHHHhCCeEEEEEE
Confidence            100 1111233344   5578864211 1000      00000000000 0111233322                    


Q ss_pred             --------cCCCCCCCCCCcccCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEeecccccCCCceeeeceEEEE
Q 011450          169 --------CGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKV  240 (485)
Q Consensus       169 --------C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V  240 (485)
                              |.|+|+..+ .+.+|+.|+|.|.++..+++.+|++++.++|+.|+|+|+++.+.|+.|+|.|++.+.++++|
T Consensus       161 ~r~~~C~~C~G~G~~~~-~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V  239 (397)
T PRK14281        161 KKQVPCKECNGTGSKTG-ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACYGEGIKQGEVTVKV  239 (397)
T ss_pred             EeeecCCCCCCcccCCC-CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCCCCCCCCccEecceEEEE
Confidence                    999999876 67899999999999888888999998889999999999999999999999999999999999


Q ss_pred             EcCCCCCCCCEEEEccccCCCCCCCCCccEEEEEEeeccccccccccceEEEEEecchhhccCceEEEEccCCeEEEEeC
Q 011450          241 VIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIP  320 (485)
Q Consensus       241 ~IP~Gv~dG~~Ir~~G~Gd~~~~g~~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip  320 (485)
                      .||||+++|++|+|+|+|+++..++.+|||||+|++++|+.|+|+|+||+++++|||.|||+|+++.|+|+||++.|+||
T Consensus       240 ~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~i~v~ip  319 (397)
T PRK14281        240 TVPAGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVPTLDGAVKLTIP  319 (397)
T ss_pred             ecCCCCCCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHhcCCeEEeecCCccEEEEeC
Confidence            99999999999999999999877788999999999999999999999999999999999999999999999999899999


Q ss_pred             CCCCCCCEEEEcCCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHHHHHHHHhh
Q 011450          321 SGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFL  374 (485)
Q Consensus       321 ~g~q~G~~irl~g~G~P~~~~~~~rGDL~V~~~V~~P~~ls~~q~~ll~~l~~~  374 (485)
                      +|+++|++++|+|+|||..+. +.+|||||+|+|.||+.|+++|+++|++|++.
T Consensus       320 ~g~~~G~~~ri~g~G~P~~~~-~~~GDL~V~~~V~~P~~Ls~~qk~~l~~l~~~  372 (397)
T PRK14281        320 AGTQPETMLRIPGKGIGHLRG-SGRGDQYVRVNVFVPKEVSHQDKELLKELKKS  372 (397)
T ss_pred             CccCCCcEEEEcCCCCCCCCC-CCCCCEEEEEEEEcCCCCCHHHHHHHHHHHhh
Confidence            999999999999999997654 46899999999999999999999999999864

>PRK14282 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=5.6e-71  Score=573.57  Aligned_cols=333  Identities=36%  Similarity=0.643  Sum_probs=277.4

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCC--ccHHHHHHHHHHHHhhhccccccchhccccccCcCcccCC-
Q 011450           43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS--PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDG-  119 (485)
Q Consensus        43 ~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~--~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~~~~~~-  119 (485)
                      .+|||++|||+++||.+|||+|||+||++||||+|+.  +.|+++|++|++||+||+||++|++||+||++++...+.+ 
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~~~~~~~~   82 (369)
T PRK14282          3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGEQPPYQET   82 (369)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCccccccccccC
Confidence            5899999999999999999999999999999999974  5688999999999999999999999999999876532111 


Q ss_pred             -CCCCCC-----CC-Cc--hhhhhhhcCCCCCCCCC-CCCCCCcccc--------c-CCC-------CCcccccccCCCC
Q 011450          120 -LSNTSQ-----GV-DP--FELYSAFFGGSDGLFGG-VGEAGGINFN--------F-GNK-------GNFGLDIRCGGTG  173 (485)
Q Consensus       120 -~~~~~~-----~~-dp--~d~f~~fFgg~~g~fg~-~g~~~g~~~~--------~-~~~-------~~~~~di~C~GtG  173 (485)
                       ++++..     .+ ++  .|+|+.|||+.++.... ..+..+.+..        . ...       .....|-.|+|+|
T Consensus        83 ~~~g~~~~~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~~~g~di~~~l~~slee~~~G~~~~i~~~r~~~C~~C~G~G  162 (369)
T PRK14282         83 ESGGGFFEDIFKDFENIFNRDIFDIFFGERRTQEEQREYARRGEDIRYEIEVTLSDLINGAEIPVEYDRYETCPHCGGTG  162 (369)
T ss_pred             CCCCcccccccccccccccchhhhHhhcccCCcccccCCCCCCCCeEEEEEEEHHHhcCCeEEEEEeeecccCCCCCccC
Confidence             110100     01 11  26788888642110000 0000000000        0 000       0011222399999


Q ss_pred             CCCCCCcccCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEeecccccCCCceeeeceEEEEEcCCCCCCCCEEE
Q 011450          174 AKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQ  253 (485)
Q Consensus       174 ~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~dG~~Ir  253 (485)
                      ++.+..+.+|+.|+|+|.++..+++++|++++.++|+.|+|+|+++...|..|+|.|++.+.++++|.||||+.+|++|+
T Consensus       163 ~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~  242 (369)
T PRK14282        163 VEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHECGGSGRIRRRVRTTVKIPAGVEDGTVLR  242 (369)
T ss_pred             CCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCCCCCCCCCCceeEEEEEEEEEEeCCCCCCCCEEE
Confidence            99888889999999999999989999999999999999999999999999999999999999999999999999999999


Q ss_pred             EccccCCCCCCCCCccEEEEEEeeccccccccccceEEEEEecchhhccCceEEEEccCCe-EEEEeCCCCCCCCEEEEc
Q 011450          254 IRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGM-KDLRIPSGVQPGDTVKLQ  332 (485)
Q Consensus       254 ~~G~Gd~~~~g~~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~-~~l~Ip~g~q~G~~irl~  332 (485)
                      |+|+|+++..++.+|||||+|+++||+.|+|+|+||+++++|||.||++|+++.|+|+||+ ++|+||+|+++|++++|+
T Consensus       243 ~~g~G~~~~~~~~~GDl~i~i~v~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~i~v~Ip~g~~~g~~iri~  322 (369)
T PRK14282        243 ITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPLPEGGTTMLKIPPGTQPETVFRLK  322 (369)
T ss_pred             EecccCCCCCCCCCCCEEEEEEEecCCcEEEecCCEEEEEEeCHHHHhCCCEEEEeCCCCcEEEEEeCCCcCCCCEEEEC
Confidence            9999999887889999999999999999999999999999999999999999999999996 799999999999999999


Q ss_pred             CCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHHHHHHHHhhcC
Q 011450          333 QMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLKS  376 (485)
Q Consensus       333 g~G~P~~~~~~~rGDL~V~~~V~~P~~ls~~q~~ll~~l~~~~~  376 (485)
                      |+|||..+. +.+|||||+|+|.+|+.|+++++++|++|+++..
T Consensus       323 GkG~p~~~~-~~~GDL~V~~~v~~P~~l~~~~~~ll~~l~~~~~  365 (369)
T PRK14282        323 GKGLPNMRY-GRRGDLIVNVHVEIPKRLSREERKLLKELAKKRG  365 (369)
T ss_pred             CCCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHhcC
Confidence            999997543 4689999999999999999999999999988754

>PRK14279 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.2e-70  Score=574.51  Aligned_cols=315  Identities=34%  Similarity=0.626  Sum_probs=263.6

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCC-CccHHHHHHHHHHHHhhhccccccchhccccccCcCcccC---
Q 011450           43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYD---  118 (485)
Q Consensus        43 ~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~-~~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~~~~~---  118 (485)
                      .+|||++|||+++||.+|||+|||+||++||||+|+ ++.|+++|++|++||+|||||+||++||+||+++...+..   
T Consensus         8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~~~~~g~~~~~   87 (392)
T PRK14279          8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRLFAGGGFGGRR   87 (392)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhhcccccccccc
Confidence            589999999999999999999999999999999997 4678999999999999999999999999999753321110   


Q ss_pred             --C-CCCCC-------CCCCchhhh---------------hhhcCCCCCCCCCCCCCCCcccccCCCCCcccc-------
Q 011450          119 --G-LSNTS-------QGVDPFELY---------------SAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLD-------  166 (485)
Q Consensus       119 --~-~~~~~-------~~~dp~d~f---------------~~fFgg~~g~fg~~g~~~g~~~~~~~~~~~~~d-------  166 (485)
                        + ++.++       .++++.++|               +.||++.    +  +  +.    ....+.++.|       
T Consensus        88 ~~~~~~~~g~~~~~~~~~~d~~~~f~~~~~~~~~~f~d~f~~~fg~~----~--~--~~----~~~~~~~g~di~~~l~l  155 (392)
T PRK14279         88 FDGGGGFGGFGTGGDGAEFNLNDLFDAAGRGGGGGIGDLFGGLFNRG----G--G--SA----RPSRPRRGNDLETETTL  155 (392)
T ss_pred             ccCCCCCCCccccccccCcChhhhhcccccccccchhhhhhhhhcCC----C--c--cc----ccCCCCCCCCeEEEEEE
Confidence              0 00000       012222232               2233210    0  0  00    0001112222       


Q ss_pred             ---------------------cccCCCCCCCCCCcccCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEeecccc
Q 011450          167 ---------------------IRCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRR  225 (485)
Q Consensus       167 ---------------------i~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~  225 (485)
                                           -.|+|+|++....+.+|+.|+|+|.++..+    |++++.++|+.|+|+|+++...|..
T Consensus       156 tLee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~i~~~C~~  231 (392)
T PRK14279        156 DFVEAAKGVTMPLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQ----GAFGFSEPCTDCRGTGSIIEDPCEE  231 (392)
T ss_pred             EHHHHhCCeEEEEeeeccccCCCCccccccCCCCCCCCCCCcceEEEEEEe----cceEEEEecCCCCceeEEeCCcCCC
Confidence                                 229999999988899999999999876543    5667779999999999999999999


Q ss_pred             cCCCceeeeceEEEEEcCCCCCCCCEEEEccccCCCCCCCCCccEEEEEEeeccccccccccceEEEEEecchhhccCce
Q 011450          226 CGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTS  305 (485)
Q Consensus       226 C~G~G~v~~~k~l~V~IP~Gv~dG~~Ir~~G~Gd~~~~g~~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~  305 (485)
                      |+|.|++.+.++++|.||||+++|++|+|+|+|+++++++.+|||+|+|+++||+.|+|+|+||+++++|||.+|++|++
T Consensus       232 C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~  311 (392)
T PRK14279        232 CKGTGVTTRTRTINVRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGST  311 (392)
T ss_pred             CCCCeEEEEeeeeEEEeCCCCCCCcEEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCce
Confidence            99999999999999999999999999999999999887888999999999999999999999999999999999999999


Q ss_pred             EEEEccCCeEEEEeCCCCCCCCEEEEcCCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 011450          306 MEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK  375 (485)
Q Consensus       306 i~V~tldG~~~l~Ip~g~q~G~~irl~g~G~P~~~~~~~rGDL~V~~~V~~P~~ls~~q~~ll~~l~~~~  375 (485)
                      +.|+|+||+++|+||+|+++|++++|+|+|||..  .+.+|||||+|+|.+|+.|+++|+++|++|+.+.
T Consensus       312 ~~v~~ldg~i~v~Ip~g~~~g~~iri~g~G~p~~--~~~~GDL~I~~~v~~P~~Ls~~q~~~l~~~~~~~  379 (392)
T PRK14279        312 LSVPTLDGPVGVKVPAGTADGRILRVRGRGVPKR--SGGAGDLLVTVKVAVPPNLDGAAAEALEAYAEAE  379 (392)
T ss_pred             EEEEcCCceEEEEECCCCCCCCEEEECCCCCCCC--CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999963  2468999999999999999999999999999763

>PRK14285 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=2.9e-70  Score=567.14  Aligned_cols=330  Identities=29%  Similarity=0.566  Sum_probs=274.4

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCC-ccHHHHHHHHHHHHhhhccccccchhccccccCcCcccCCCC
Q 011450           43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS-PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLS  121 (485)
Q Consensus        43 ~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~-~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~~~~~~~~  121 (485)
                      .+|||++|||+++||.+|||+|||+||++||||+|+. +.|+++|++|++||+||+||++|+.||+||++++.++.+.++
T Consensus         2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~~~~~~~~   81 (365)
T PRK14285          2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFEGGGGFEG   81 (365)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhccCCCccc
Confidence            4799999999999999999999999999999999974 678899999999999999999999999999988754321100


Q ss_pred             --CCCC--C---CCchhhhhhhcCCCCCCCCCCCCCCCcccc--------c-CCC-------CCcccccccCCCCCCCCC
Q 011450          122 --NTSQ--G---VDPFELYSAFFGGSDGLFGGVGEAGGINFN--------F-GNK-------GNFGLDIRCGGTGAKSSN  178 (485)
Q Consensus       122 --~~~~--~---~dp~d~f~~fFgg~~g~fg~~g~~~g~~~~--------~-~~~-------~~~~~di~C~GtG~~~~~  178 (485)
                        ++..  +   .++.|+|+.|||+..+......+..+.+..        . ...       .....|-.|+|+|++.+.
T Consensus        82 ~~~g~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~  161 (365)
T PRK14285         82 FSGGFSGFSDIFEDFGDIFDSFFTGNRGQDKNRKHEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCESCLGKKSEKGT  161 (365)
T ss_pred             cCCCccccccccccHHHHHHHhhcCCcCCCCCcCCCCCCCEEEEEEEEHHHhhCCeEEEEEeeecccCCCCCCcccCCCC
Confidence              0000  0   134578899986421110000000000000        0 000       001122339999999888


Q ss_pred             CcccCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEeecccccCCCceeeeceEEEEEcCCCCCCCCEEEEcccc
Q 011450          179 CIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEG  258 (485)
Q Consensus       179 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~dG~~Ir~~G~G  258 (485)
                      .+..|+.|+|+|.++.    .+|++++.++|+.|+|+|+++.+.|..|+|.|++.+.++++|.||||+++|++|+|+|+|
T Consensus       162 ~~~~C~~C~G~G~~~~----~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G  237 (365)
T PRK14285        162 SPSICNMCNGSGRVMQ----GGGFFRVTTTCPKCYGNGKIISNPCKSCKGKGSLKKKETIELKIPAGIDDNQQIKMRGKG  237 (365)
T ss_pred             CCccCCCccCceeEEe----cCceeEEeeecCCCCCcccccCCCCCCCCCCCEEeccEEEEEEECCCCCCCCEEEEeecc
Confidence            8899999999998764    357787789999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCccEEEEEEeeccccccccccceEEEEEecchhhccCceEEEEccCCe-EEEEeCCCCCCCCEEEEcCCCCC
Q 011450          259 NFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGM-KDLRIPSGVQPGDTVKLQQMGVP  337 (485)
Q Consensus       259 d~~~~g~~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~-~~l~Ip~g~q~G~~irl~g~G~P  337 (485)
                      ++++.++.+|||||+|++++|+.|+|+|+||+++++|||.|||+|+++.|+|+||+ ++|.||+|+++|++++|+|+|||
T Consensus       238 ~~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~~~i~tldG~~v~V~Ip~g~~~g~~irl~GkG~p  317 (365)
T PRK14285        238 SVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKKIKIKIPKGTENDEQIIIKNEGMP  317 (365)
T ss_pred             ccCCCCCCCCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCEEEEECCCCCEEEEEeCCCcCCCcEEEECCCCcc
Confidence            99887788999999999999999999999999999999999999999999999995 79999999999999999999999


Q ss_pred             CCCCCCCCccEEEEEEEEcCCCCChhHHHHHHHHHhhcCC
Q 011450          338 DINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLKSP  377 (485)
Q Consensus       338 ~~~~~~~rGDL~V~~~V~~P~~ls~~q~~ll~~l~~~~~~  377 (485)
                      ..+. ..+|||||+|+|.+|+.|+++|+++|++|+++.++
T Consensus       318 ~~~~-~~~GDL~V~~~v~~P~~l~~~q~~~l~~l~~~~~~  356 (365)
T PRK14285        318 ILHT-EKFGNLILIIKIKTPKNLNSNAIKLLENLSKELKD  356 (365)
T ss_pred             CCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence            7654 35799999999999999999999999999988765

>PRK14301 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=8.5e-70  Score=565.07  Aligned_cols=325  Identities=36%  Similarity=0.648  Sum_probs=269.3

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCC-ccHHHHHHHHHHHHhhhccccccchhccccccCcCcccCCCC
Q 011450           43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS-PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLS  121 (485)
Q Consensus        43 ~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~-~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~~~~~~~~  121 (485)
                      .+|||++|||+++||.+|||+|||+||++||||+|++ ++|+++|++|++||+||+||.+|+.||+||++++++++++++
T Consensus         3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~~~~~~~g   82 (373)
T PRK14301          3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNGNGGFGG   82 (373)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccccccccCCCCCC
Confidence            5799999999999999999999999999999999974 678899999999999999999999999999988764211111


Q ss_pred             CCCCCCCc----hhhhhhhcCCCCCCCCCC--CCCCCccccc---------CCC-------CCcccccccCCCCCCCCCC
Q 011450          122 NTSQGVDP----FELYSAFFGGSDGLFGGV--GEAGGINFNF---------GNK-------GNFGLDIRCGGTGAKSSNC  179 (485)
Q Consensus       122 ~~~~~~dp----~d~f~~fFgg~~g~fg~~--g~~~g~~~~~---------~~~-------~~~~~di~C~GtG~~~~~~  179 (485)
                      .. ...++    .|+|+.|||+. ++.+..  .+..+.+...         ...       .....+..|+|+|+.....
T Consensus        83 ~~-~~~~~~~~f~d~f~~~fg~g-~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~  160 (373)
T PRK14301         83 FS-SAEDIFSHFSDIFGDLFGFS-GGGSRRGPRPQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGTS  160 (373)
T ss_pred             cc-cccccccchHHHHHHHhhcc-CcccccCCCCCCCCCEEEEEeccHHHHhCCceEEEEeeecccCCCCCCcccCCCCC
Confidence            10 01122    25666666421 000000  0000000000         000       0011222399999998888


Q ss_pred             cccCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEeecccccCCCceeeeceEEEEEcCCCCCCCCEEEEccccC
Q 011450          180 IQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGN  259 (485)
Q Consensus       180 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~dG~~Ir~~G~Gd  259 (485)
                      +.+|+.|+|+|.+...    .|++++.++|+.|+|+|+++...|..|+|.|++.+.++++|.||||+++|++|+|+|+|+
T Consensus       161 ~~~C~~C~G~G~v~~~----~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~  236 (373)
T PRK14301        161 PETCRHCGGSGQVRQS----QGFFQIAVPCPVCRGEGRVITHPCPKCKGSGIVQQTRELKVRIPAGVDTGSRLRLRGEGE  236 (373)
T ss_pred             CcccCCccCeeEEEEE----eeeEEEEEeCCCCCceeeecCCCCCCCCCCceeccceEEEEEeCCCCcCCCEEEEecccc
Confidence            8999999999987653    267788899999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCccEEEEEEeeccccccccccceEEEEEecchhhccCceEEEEccCCeEEEEeCCCCCCCCEEEEcCCCCCCC
Q 011450          260 FDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDI  339 (485)
Q Consensus       260 ~~~~g~~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~irl~g~G~P~~  339 (485)
                      ++..++.+|||||+|++++|+.|+|+|+||+++++|||.+|++|+++.|+|+||+++|+||+|+++|++++|+|+|||..
T Consensus       237 ~~~~~~~~GDLiv~i~v~~h~~f~r~G~DL~~~~~Isl~eAl~G~~~~v~tldG~i~v~ip~g~~~g~~~ri~g~G~p~~  316 (373)
T PRK14301        237 PGVHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDDPVTLDIPKGTQSGEVFRLRGKGLPYL  316 (373)
T ss_pred             CCCCCCCCcCEEEEEEEEECCCceeecCcEEEEEEecHHHHhCCCeEEEecCCccEEEEECCCcCCCcEEEEcCCCCCCC
Confidence            98777889999999999999999999999999999999999999999999999999999999999999999999999986


Q ss_pred             CCCCCCccEEEEEEEEcCCCCChhHHHHHHHHHhh
Q 011450          340 NNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFL  374 (485)
Q Consensus       340 ~~~~~rGDL~V~~~V~~P~~ls~~q~~ll~~l~~~  374 (485)
                      +. ..+|||||+|+|.+|+.|+++|+++|++|+.+
T Consensus       317 ~~-~~~GDL~I~~~V~~P~~l~~~q~~~l~~l~~~  350 (373)
T PRK14301        317 GS-SQKGDLLVEVSVVTPTKLTKRQEELLREFEAL  350 (373)
T ss_pred             CC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            54 46899999999999999999999999999875

>PRK14294 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.5e-69  Score=562.37  Aligned_cols=326  Identities=36%  Similarity=0.685  Sum_probs=271.6

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCC-CccHHHHHHHHHHHHhhhccccccchhccccccCcCcccCCCC
Q 011450           43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLS  121 (485)
Q Consensus        43 ~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~-~~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~~~~~~~~  121 (485)
                      .+|||+||||+++||.+|||+|||+||++||||+|+ +++|+++|++|++||+||+||.+|+.||+||+++++++..+ +
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~~~~~~-~   81 (366)
T PRK14294          3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSGTGFS-G   81 (366)
T ss_pred             CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccccCCCCC-C
Confidence            589999999999999999999999999999999998 46789999999999999999999999999999987642111 1


Q ss_pred             CCCCC--C-CchhhhhhhcCCCCCCCCCC---CCCCCccccc---------CCC-------CCcccccccCCCCCCCCCC
Q 011450          122 NTSQG--V-DPFELYSAFFGGSDGLFGGV---GEAGGINFNF---------GNK-------GNFGLDIRCGGTGAKSSNC  179 (485)
Q Consensus       122 ~~~~~--~-dp~d~f~~fFgg~~g~fg~~---g~~~g~~~~~---------~~~-------~~~~~di~C~GtG~~~~~~  179 (485)
                      .++..  + ++.|+|++|||.. +..++.   .+..+.+...         ...       .....+..|.|+|......
T Consensus        82 ~~~~~~~~~~~~d~f~~~fg~g-~~~~~~~~~~~~~g~d~~~~l~lslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~  160 (366)
T PRK14294         82 FSGFDDIFSSFGDIFEDFFGFG-GGRRGRSRTAVRAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGSGCEPGTS  160 (366)
T ss_pred             cCccccchhhhhhhHHHhhccC-CCcCCcccCCCCCCCCceEEEEeeHHHhcCCeEEEEEeeecccCCCCCCccccCCCC
Confidence            01110  1 2347888888610 100000   0000000000         000       0011223399999998888


Q ss_pred             cccCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEeecccccCCCceeeeceEEEEEcCCCCCCCCEEEEccccC
Q 011450          180 IQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGN  259 (485)
Q Consensus       180 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~dG~~Ir~~G~Gd  259 (485)
                      +.+|+.|+|+|.++..    .|++++.++|+.|+|+|+++...|..|+|.|++.+.++++|.||||+++|++|+|+|+|+
T Consensus       161 ~~~C~~C~G~G~~~~~----~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~  236 (366)
T PRK14294        161 PTTCPQCGGSGQVTQS----QGFFSIRTTCPRCRGMGKVIVSPCKTCHGQGRVRVSKTVQVKIPAGVDTGSRLRLRGEGE  236 (366)
T ss_pred             cccCCCcCCeEEEEEE----eeeEEEEeeCCCCCCcCeecCcCCCCCCCceEeecceeEEEecCCCCcCCcEEEEccCcc
Confidence            8999999999987643    277777899999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCccEEEEEEeeccccccccccceEEEEEecchhhccCceEEEEccCCeEEEEeCCCCCCCCEEEEcCCCCCCC
Q 011450          260 FDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDI  339 (485)
Q Consensus       260 ~~~~g~~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~irl~g~G~P~~  339 (485)
                      ++..++.+|||+|+|+++||+.|+|+|+||+++++|||.+|++|+++.|+|+||+++|+||+|+++|++++|+|+|||..
T Consensus       237 ~~~~~~~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~iri~G~G~p~~  316 (366)
T PRK14294        237 AGVRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGERELKIPKGTQPGDIFRFKGKGIPSL  316 (366)
T ss_pred             CCCCCCCCCcEEEEEEEccCCcceecCCCEEEEEEeCHHHHhCCCeEEEECCCCcEEEEECCCcCCCCEEEECCCCCCCC
Confidence            98778889999999999999999999999999999999999999999999999998999999999999999999999976


Q ss_pred             CCCCCCccEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 011450          340 NNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK  375 (485)
Q Consensus       340 ~~~~~rGDL~V~~~V~~P~~ls~~q~~ll~~l~~~~  375 (485)
                      +. ..+|||||+|+|.+|+.|+++|+++|++|+.+.
T Consensus       317 ~~-~~~GDL~V~~~v~~P~~l~~~q~~ll~~~~~~~  351 (366)
T PRK14294        317 RG-GGRGDQIIEVEVKVPTRLTKKQEELLTEFARLE  351 (366)
T ss_pred             CC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            54 368999999999999999999999999998763

>PRK14300 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=3.2e-69  Score=560.74  Aligned_cols=327  Identities=33%  Similarity=0.631  Sum_probs=270.1

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhhhccccccchhccccccCcCccc--CC-
Q 011450           43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEY--DG-  119 (485)
Q Consensus        43 ~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~~~~--~~-  119 (485)
                      .+|||+||||+++||.+|||+|||+||++||||+|+++.++++|++|++||++|+|+.+|+.||+||++++....  ++ 
T Consensus         2 ~~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~~   81 (372)
T PRK14300          2 SQDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQNQQSRGGG   81 (372)
T ss_pred             CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhccccccccccccCCC
Confidence            379999999999999999999999999999999998778999999999999999999999999999998876321  10 


Q ss_pred             CCCCCCCCCchhhhhhhcCCCCCCCCCCCC----CCCccccc---------CCC-------CCcccccccCCCCCCCCCC
Q 011450          120 LSNTSQGVDPFELYSAFFGGSDGLFGGVGE----AGGINFNF---------GNK-------GNFGLDIRCGGTGAKSSNC  179 (485)
Q Consensus       120 ~~~~~~~~dp~d~f~~fFgg~~g~fg~~g~----~~g~~~~~---------~~~-------~~~~~di~C~GtG~~~~~~  179 (485)
                      ++.++.+.++.++|++||+++.++.+...+    ..+.+...         ...       .....+-.|+|+|...+..
T Consensus        82 g~~~~~~~~~~~~f~~~f~~~~gg~~~~~~~~~~~~g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~C~G~g~~~~~~  161 (372)
T PRK14300         82 GNHGGFHPDINDIFGDFFSDFMGGSRRSRPTSSKVRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGET  161 (372)
T ss_pred             CCCCccccchhhhHHHHHHhhcCCCCCCCCCcCCCCCCCeeEEEEEEHHHHhCCceEEEEeeeccccCCCCCcccCCCCC
Confidence            100111113346677777542111000000    00000000         000       0011222399999998888


Q ss_pred             cccCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEeecccccCCCceeeeceEEEEEcCCCCCCCCEEEEccccC
Q 011450          180 IQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGN  259 (485)
Q Consensus       180 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~dG~~Ir~~G~Gd  259 (485)
                      +.+|+.|+|+|.++..    .|++++..+|+.|+|.|+++...|..|+|.|++.+.++++|.||||+.+|++|+++|+|+
T Consensus       162 ~~~C~~C~G~G~~~~~----~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~l~g~G~  237 (372)
T PRK14300        162 VTTCDACSGVGATRMQ----QGFFTIEQACHKCQGNGQIIKNPCKKCHGMGRYHKQRNLSVNIPAGVENGTRIRHTGEGE  237 (372)
T ss_pred             CccCCCccCeEEEEEe----eceEEEEEeCCCCCccceEeCCCCCCCCCceEEEeeEEEEEEECCCCCCCcEEEEecccc
Confidence            9999999999987643    377887889999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCccEEEEEEeeccccccccccceEEEEEecchhhccCceEEEEccCC-eEEEEeCCCCCCCCEEEEcCCCCCC
Q 011450          260 FDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEG-MKDLRIPSGVQPGDTVKLQQMGVPD  338 (485)
Q Consensus       260 ~~~~g~~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~V~tldG-~~~l~Ip~g~q~G~~irl~g~G~P~  338 (485)
                      ++.+++.+|||+|+|+++||+.|+|+|+||+++++|+|.+|++|+++.|+|+|| .++|+||+|+++|++++|+|+|||.
T Consensus       238 ~~~~~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~i~~ldg~~i~v~Ip~g~~~g~~iri~g~G~p~  317 (372)
T PRK14300        238 AGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEGGKVNLTIPAGTQNGDQLRLRSKGMSK  317 (372)
T ss_pred             CCCCCCCCCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCCCEEEEEECCccCCCcEEEECCCCCCC
Confidence            987788999999999999999999999999999999999999999999999998 5899999999999999999999997


Q ss_pred             CCCCCCCccEEEEEEEEcCCCCChhHHHHHHHHHhh
Q 011450          339 INNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFL  374 (485)
Q Consensus       339 ~~~~~~rGDL~V~~~V~~P~~ls~~q~~ll~~l~~~  374 (485)
                      .++ ..+|||||+|+|.+|+.|+++|+++|++|+..
T Consensus       318 ~~~-~~~GDL~V~~~v~~P~~ls~~qk~~l~~l~~~  352 (372)
T PRK14300        318 MRS-TIRGDMLTHIHVEVPKNLSKRQRELLEEFKKE  352 (372)
T ss_pred             CCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            653 46899999999999999999999999999853

>PRK14295 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=2.1e-69  Score=564.67  Aligned_cols=317  Identities=39%  Similarity=0.654  Sum_probs=265.6

Q ss_pred             cCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCC-ccHHHHHHHHHHHHhhhccccccchhcc----ccccCcCcc
Q 011450           42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS-PGAEEKFKEISSAYEVLSDDEKRSVYDR----FGEAGITGE  116 (485)
Q Consensus        42 ~~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~-~~a~e~F~~I~~AYevLsDp~kR~~YD~----~G~~~~~~~  116 (485)
                      +.+|||+||||+++||.+|||+|||+||++||||+|+. +.|+++|++|++||+||+||++|+.||+    ||++++.++
T Consensus         7 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~~~~   86 (389)
T PRK14295          7 IEKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGFRPG   86 (389)
T ss_pred             cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcccccccC
Confidence            35899999999999999999999999999999999974 5789999999999999999999999999    999887532


Q ss_pred             cCCCCCCCCCCCchhhhhhh----------------cCCCCCCCCCCCCCCCcccccCCCCCccc---------------
Q 011450          117 YDGLSNTSQGVDPFELYSAF----------------FGGSDGLFGGVGEAGGINFNFGNKGNFGL---------------  165 (485)
Q Consensus       117 ~~~~~~~~~~~dp~d~f~~f----------------Fgg~~g~fg~~g~~~g~~~~~~~~~~~~~---------------  165 (485)
                      .++++.++..+++.++|..+                |+.+   |++.+        ....+.++.               
T Consensus        87 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~f~d~f~~~---fg~~~--------~~~~~~~g~di~~~l~lsLee~~~  155 (389)
T PRK14295         87 PGGGGGGGFNFDLGDLFGGGAQGGGGAGGGGGLGDVFGGL---FNRGG--------RRTQPRRGADVESEVTLSFTEAID  155 (389)
T ss_pred             CCCCCCCCCCcccccccccccccccccccccchhhhhccc---ccCCC--------CCCCCCCCCCEEEEEEEEHHHHhC
Confidence            11000011112333333221                2110   11000        000011122               


Q ss_pred             -------------ccccCCCCCCCCCCcccCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEeecccccCCCcee
Q 011450          166 -------------DIRCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEV  232 (485)
Q Consensus       166 -------------di~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v  232 (485)
                                   |..|.|+|++.+..+.+|+.|+|+|.++..+    |.+++.++|+.|+|+|+++...|..|.|.|++
T Consensus       156 G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~  231 (389)
T PRK14295        156 GATVPLRLTSQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNS----GGFSLSEPCPDCKGRGLIADDPCLVCKGSGRA  231 (389)
T ss_pred             CceEEEEeeccccCCCCcccccCCCCCCcCCCCCCCEeEEEEEe----cceEEEEecCCCcceeEEeccCCCCCCCCceE
Confidence                         2239999999988889999999999887653    56677789999999999999999999999999


Q ss_pred             eeceEEEEEcCCCCCCCCEEEEccccCCCCCCCCCccEEEEEEeeccccccccccceEEEEEecchhhccCceEEEEccC
Q 011450          233 QSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVE  312 (485)
Q Consensus       233 ~~~k~l~V~IP~Gv~dG~~Ir~~G~Gd~~~~g~~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~V~tld  312 (485)
                      .+.++++|.||+|+++|++|+|+|+|++...++.+|||+|+|+++||+.|+|+|+||+++++|||.+|++|++++|+|+|
T Consensus       232 ~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~tld  311 (389)
T PRK14295        232 KSSRTMQVRIPAGVSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVPTLG  311 (389)
T ss_pred             eeeeEEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEEEEeecHHHHhCCCeEEEECCC
Confidence            99999999999999999999999999998778889999999999999999999999999999999999999999999999


Q ss_pred             C-eEEEEeCCCCCCCCEEEEcCCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 011450          313 G-MKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK  375 (485)
Q Consensus       313 G-~~~l~Ip~g~q~G~~irl~g~G~P~~~~~~~rGDL~V~~~V~~P~~ls~~q~~ll~~l~~~~  375 (485)
                      | .+.|+||+|+++|++++|+|+|||..+  +.+|||||+|+|.||+.|+++|+++|++|++..
T Consensus       312 G~~~~v~ip~g~~~g~~iri~G~G~p~~~--~~~GDL~i~~~v~~P~~Ls~~qk~~l~~l~~~~  373 (389)
T PRK14295        312 GPPVTVKLPPGTPNGRVLRVRGKGAVRKD--GTRGDLLVTVEVAVPKDLSGKAREALEAFREAT  373 (389)
T ss_pred             CCEEEEEECCccCCCcEEEECCCCcCCCC--CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence            9 589999999999999999999999643  468999999999999999999999999998753

>PRK10767 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=6.9e-69  Score=558.48  Aligned_cols=326  Identities=38%  Similarity=0.669  Sum_probs=268.4

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCC-CccHHHHHHHHHHHHhhhccccccchhccccccCcCcccCCCC
Q 011450           43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLS  121 (485)
Q Consensus        43 ~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~-~~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~~~~~~~~  121 (485)
                      .+|||++|||+++||.+|||+|||+||++||||+|+ ++.|+++|++|++||++|+||.+|+.||+||++++..+.++++
T Consensus         3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~~~~~~~~   82 (371)
T PRK10767          3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQGGGGGG   82 (371)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccccccccCCCCCC
Confidence            579999999999999999999999999999999997 4678899999999999999999999999999988764321111


Q ss_pred             CCC-CCC-C-chhhhhhhcCCCCCCCCCCCCCCCcccc--------c-CCC-------CCcccccccCCCCCCCCCCccc
Q 011450          122 NTS-QGV-D-PFELYSAFFGGSDGLFGGVGEAGGINFN--------F-GNK-------GNFGLDIRCGGTGAKSSNCIQS  182 (485)
Q Consensus       122 ~~~-~~~-d-p~d~f~~fFgg~~g~fg~~g~~~g~~~~--------~-~~~-------~~~~~di~C~GtG~~~~~~~~~  182 (485)
                      .++ .++ + +.++|+.|||+.++ .+...+..+.+..        . ...       .....|-.|.|+|.........
T Consensus        83 ~~~~~~~~~~f~~~f~~~fgg~~~-~~~~~~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~  161 (371)
T PRK10767         83 FGGGGGFGDIFGDIFGDIFGGGRG-GGRQRARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKT  161 (371)
T ss_pred             CCCccccccchhhhhhhhccCCcc-ccCCCCCCCCCeEEEEEeehHHhhCCeeEEEeeeecccCCCCCCcccCCCCCCcc
Confidence            011 011 2 22456666643100 0000000000000        0 000       0011223399999998888899


Q ss_pred             CCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEeecccccCCCceeeeceEEEEEcCCCCCCCCEEEEccccCCCC
Q 011450          183 CKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDR  262 (485)
Q Consensus       183 C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~dG~~Ir~~G~Gd~~~  262 (485)
                      |+.|+|+|.++..+    |++++.++|+.|+|+|+++...|..|+|.|++.+.++++|.||||+.+|++|+|+|+|+++.
T Consensus       162 C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~  237 (371)
T PRK10767        162 CPTCHGAGQVRMQQ----GFFTVQQTCPTCHGRGKIIKDPCKKCHGQGRVEKEKTLSVKIPAGVDTGDRIRLSGEGEAGE  237 (371)
T ss_pred             CCCCCCeeEEEEee----ceEEEEEeCCCCCCceeECCCCCCCCCCCceEeeeeeEEEecCCCCCCCcEEEEecCccCCC
Confidence            99999999876543    67777789999999999999999999999999999999999999999999999999999977


Q ss_pred             CCCCCccEEEEEEeeccccccccccceEEEEEecchhhccCceEEEEccCCeEEEEeCCCCCCCCEEEEcCCCCCCCCCC
Q 011450          263 RRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNP  342 (485)
Q Consensus       263 ~g~~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~irl~g~G~P~~~~~  342 (485)
                      .++.+|||||+|+++||+.|+|+|+||++++.|+|.+|++|+++.|+|+||.+.|+||+|+++|++++|+|+|||..+. 
T Consensus       238 ~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~i~v~ip~g~~~g~~~~i~g~G~p~~~~-  316 (371)
T PRK10767        238 RGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDGRVKLKIPEGTQTGKLFRLRGKGVKSVRS-  316 (371)
T ss_pred             CCCCCcCEEEEEEEeeCCCEEEecCCEEEEEEeCHHHHhCCCeEEEecCCCcEEEEeCCCCCCCCEEEECCCCcCCCCC-
Confidence            7788999999999999999999999999999999999999999999999998899999999999999999999997654 


Q ss_pred             CCCccEEEEEEEEcCCCCChhHHHHHHHHHhh
Q 011450          343 SVRGDHLFIVNVLIPKDISDPERALVEEIAFL  374 (485)
Q Consensus       343 ~~rGDL~V~~~V~~P~~ls~~q~~ll~~l~~~  374 (485)
                      +.+|||||+|+|.+|+.|+++|+++|++|++.
T Consensus       317 ~~~GDL~v~~~v~~P~~l~~~~~~ll~~l~~~  348 (371)
T PRK10767        317 GARGDLYCQVVVETPVNLTKRQKELLEEFEES  348 (371)
T ss_pred             CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            46899999999999999999999999999864

>PRK14291 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.1e-68  Score=558.62  Aligned_cols=329  Identities=37%  Similarity=0.661  Sum_probs=273.2

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhhhccccccchhccccccCcCcccCCC-C
Q 011450           43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGL-S  121 (485)
Q Consensus        43 ~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~~~~~~~-~  121 (485)
                      .+|||++|||+++||.+|||+|||+||++||||+|+++.|+++|++|++||+|||||.+|+.||+||++++...++.. +
T Consensus         2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~~   81 (382)
T PRK14291          2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFSGSGQQQQG   81 (382)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccccccccCcccc
Confidence            579999999999999999999999999999999999888999999999999999999999999999998775432110 0


Q ss_pred             ---CCC-CCCCchhhhhhhcCCCC--CCCCCCCCCCCcccccCCCCCccccc----------------------------
Q 011450          122 ---NTS-QGVDPFELYSAFFGGSD--GLFGGVGEAGGINFNFGNKGNFGLDI----------------------------  167 (485)
Q Consensus       122 ---~~~-~~~dp~d~f~~fFgg~~--g~fg~~g~~~g~~~~~~~~~~~~~di----------------------------  167 (485)
                         .+. ...++.|+|++||+.++  +.|++.+..++... ....+.++.|+                            
T Consensus        82 ~~~~~~~~~~~~~d~f~~~f~~fg~~~~fg~~~~~~~~~~-~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~  160 (382)
T PRK14291         82 QEGFSDFGGGNIEDILEDVFDIFGFGDIFGRRRATRERRK-TYQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCE  160 (382)
T ss_pred             ccccccccCCCHHHHHHHHHHhcccccccccccccccccc-ccccccCCCCEEEEEEEEHHHhhCCEEEEEEEeeeccCC
Confidence               000 12255678888853221  11221100000000 00011122232                            


Q ss_pred             ccCCCCCCCCCCcccCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEeecccccCCCceeeeceEEEEEcCCCCC
Q 011450          168 RCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVS  247 (485)
Q Consensus       168 ~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~  247 (485)
                      .|+|+|++.+....+|+.|+|+|.++..    .+++++.++|+.|+|+|. +...|..|+|.|++.+.++++|.||||+.
T Consensus       161 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~----~g~~~~~~~C~~C~G~G~-~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~  235 (382)
T PRK14291        161 ACGGTGYDPGSGEKVCPTCGGSGEIYQR----GGFFRISQTCPTCGGEGV-LREPCSKCNGRGLVIKKETIKVRIPPGVD  235 (382)
T ss_pred             CCccccCCCCCCCccCCCCCCceEEEEe----cceEEEEecCCCCCCceE-EccCCCCCCCCceEEeeeEEEEEeCCCCC
Confidence            2999999998889999999999987654    256777789999999995 68889999999999999999999999999


Q ss_pred             CCCEEEEccccCCCCCCCCCccEEEEEEeeccccccccccceEEEEEecchhhccCceEEEEccCCe-EEEEeCCCCCCC
Q 011450          248 NGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGM-KDLRIPSGVQPG  326 (485)
Q Consensus       248 dG~~Ir~~G~Gd~~~~g~~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~-~~l~Ip~g~q~G  326 (485)
                      +|++|+|+|+|+++..++.+|||||+|+++||+.|+|+|+||+++++|+|.||++|+++.|+|+||+ ++|+||+|+++|
T Consensus       236 ~G~~i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~l~V~Ip~g~~~G  315 (382)
T PRK14291        236 NGSKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVPLLDGKKEKVKIPPGTKEG  315 (382)
T ss_pred             CCCEEEEecCcCCCCCCCCCccEEEEEEEccCCCeeeecCCeEEEEEeeHHHHhCCCEEEEecCCCCEEEEEECCccCCC
Confidence            9999999999999888899999999999999999999999999999999999999999999999996 799999999999


Q ss_pred             CEEEEcCCCCCCCCCCCCCccEEEEEEEEcCC--CCC------hhHHHHHHHHHhhcCCC
Q 011450          327 DTVKLQQMGVPDINNPSVRGDHLFIVNVLIPK--DIS------DPERALVEEIAFLKSPG  378 (485)
Q Consensus       327 ~~irl~g~G~P~~~~~~~rGDL~V~~~V~~P~--~ls------~~q~~ll~~l~~~~~~~  378 (485)
                      ++++|+|+|||..+. ..+|||||+|+|.||+  .|+      ++|++||++|+.+..+.
T Consensus       316 ~~i~i~G~G~p~~~~-~~~GDL~V~~~V~~P~~~~ls~~~~~~~~~~~~~~~l~~~~~~~  374 (382)
T PRK14291        316 DKIRVPGKGMPRLKG-SGYGDLVVRVHIDVPKISMLSKLMGDGKKAKKLLKELDKLLPEP  374 (382)
T ss_pred             CEEEECCCCCCCCCC-CCCCCEEEEEEEEeCCCcCcCccccCCHHHHHHHHHHHhhcCCc
Confidence            999999999998654 4689999999999998  599      99999999999877543

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=100.00  E-value=1e-68  Score=554.09  Aligned_cols=329  Identities=41%  Similarity=0.713  Sum_probs=277.2

Q ss_pred             CcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhhhccccccchhccccccCcCcccCC-C-CC
Q 011450           45 DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDG-L-SN  122 (485)
Q Consensus        45 d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~~~~~~-~-~~  122 (485)
                      |||++|||+++||.+|||+|||+||++||||+|+++.++++|++|++||++|+||.+|+.||+||+++++++..+ + +.
T Consensus         1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~~~~   80 (354)
T TIGR02349         1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGGGGGGGF   80 (354)
T ss_pred             ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhcccccccccCcCCCCCc
Confidence            799999999999999999999999999999999877899999999999999999999999999999887642211 1 00


Q ss_pred             CCC---C-CCchhhhhhhcCCCCCC-CC-CCCCCCCcccc---------cCCC-------CCcccccccCCCCCCCCCCc
Q 011450          123 TSQ---G-VDPFELYSAFFGGSDGL-FG-GVGEAGGINFN---------FGNK-------GNFGLDIRCGGTGAKSSNCI  180 (485)
Q Consensus       123 ~~~---~-~dp~d~f~~fFgg~~g~-fg-~~g~~~g~~~~---------~~~~-------~~~~~di~C~GtG~~~~~~~  180 (485)
                      .+.   + .++.++|+.|||+..+. .. ...+..+.+..         ....       .....+-.|.|+|+......
T Consensus        81 ~~~~~~~~~~~~~~f~~~fg~~~g~~~~~~~~~~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~  160 (354)
T TIGR02349        81 NGFDIGFFGDFGDIFGDFFGGGGGSGRRRRSGPRRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGTDP  160 (354)
T ss_pred             CCccccCcCchhhhHHHHhccCcccCccccCCCCCCCCeEEEEEEEHHHHhCCeeEEEEeecCCcCCCCCCCCCCCCCCC
Confidence            000   1 13457899999742110 00 00000000000         0000       00112223999999988888


Q ss_pred             ccCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEeecccccCCCceeeeceEEEEEcCCCCCCCCEEEEccccCC
Q 011450          181 QSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNF  260 (485)
Q Consensus       181 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~dG~~Ir~~G~Gd~  260 (485)
                      .+|+.|+|+|.++..+++++|++++.++|+.|+|+|+++...|..|+|.|++.+.++++|.||||+++|++|+|+|+|++
T Consensus       161 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~  240 (354)
T TIGR02349       161 KTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGKGRVKERKTITVKIPAGVDTGQRLRVSGKGNA  240 (354)
T ss_pred             ccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCCCCCCCCCCcEecccceEEEEECCCCCCCCEEEEecCccC
Confidence            99999999999998888999999998999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCCCccEEEEEEeeccccccccccceEEEEEecchhhccCceEEEEccCCeEEEEeCCCCCCCCEEEEcCCCCCCCC
Q 011450          261 DRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDIN  340 (485)
Q Consensus       261 ~~~g~~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~irl~g~G~P~~~  340 (485)
                      ...++.+|||+|+|++++|+.|+|+|+||+++++|||.|||+|+++.|+|+||.++|.||+++++|++++|+|+|||..+
T Consensus       241 ~~~~~~~GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~eAl~G~~~~i~~ldG~i~v~ip~g~~~g~~~~i~g~G~p~~~  320 (354)
T TIGR02349       241 GENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLDGDVKLKIPAGTQSGTVFRLKGKGVPRLR  320 (354)
T ss_pred             CCCCCCCCCEEEEEEEecCcceEEecCCEEEEEEeCHHHHhCCCeEEEecCCceEEEEECCcccCCcEEEECCCCcCCCC
Confidence            77778899999999999999999999999999999999999999999999999889999999999999999999999765


Q ss_pred             CCCCCccEEEEEEEEcCCCCChhHHHHHHHHHhh
Q 011450          341 NPSVRGDHLFIVNVLIPKDISDPERALVEEIAFL  374 (485)
Q Consensus       341 ~~~~rGDL~V~~~V~~P~~ls~~q~~ll~~l~~~  374 (485)
                      . ..+|||||+|+|.+|+.|+.+|+++|++|+..
T Consensus       321 ~-~~~GDL~i~~~v~~P~~l~~~~~~~l~~~~~~  353 (354)
T TIGR02349       321 G-NGRGDLLVTVKVETPKNLSKEQKELLEELAEA  353 (354)
T ss_pred             C-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            4 36899999999999999999999999999753

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14289 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.8e-68  Score=557.87  Aligned_cols=330  Identities=39%  Similarity=0.701  Sum_probs=276.8

Q ss_pred             cCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCC-CccHHHHHHHHHHHHhhhccccccchhccccccCcCcccCCC
Q 011450           42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGL  120 (485)
Q Consensus        42 ~~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~-~~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~~~~~~~  120 (485)
                      ..+|||++|||+++||.+|||+|||+||++||||+|+ +++|+++|++|++||++|+||.+|++||+||+++++++.+.+
T Consensus         3 ~~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~~~~~~~~   82 (386)
T PRK14289          3 EKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVGGAAGGG   82 (386)
T ss_pred             ccCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccCCCCC
Confidence            3689999999999999999999999999999999997 467999999999999999999999999999998875321111


Q ss_pred             CCCCCCCCchhhhhh---hcCCCCCCCCCCCCCCCcccccCCCCCcccc----------------------------ccc
Q 011450          121 SNTSQGVDPFELYSA---FFGGSDGLFGGVGEAGGINFNFGNKGNFGLD----------------------------IRC  169 (485)
Q Consensus       121 ~~~~~~~dp~d~f~~---fFgg~~g~fg~~g~~~g~~~~~~~~~~~~~d----------------------------i~C  169 (485)
                      +.++.++++.++|+.   +|+++.+++++.+..++ .. ......++.|                            -.|
T Consensus        83 ~~~~~~~~~~~~f~~f~~~fg~~~gg~~~~~~~~~-~~-~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C  160 (386)
T PRK14289         83 GFSGEGMSMEDIFSMFGDIFGGHGGGFGGFGGFGG-GG-SQQRVFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHC  160 (386)
T ss_pred             CCCCCCcChhhhhHHhhhhhcccccCccccccccc-cc-ccCCCCCCCCeEEEEEEEHHHhhCCeEEEEEEEeecccCCC
Confidence            111112344455443   36532111110000000 00 0001112222                            229


Q ss_pred             CCCCCCCCCCcccCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEeecccccCCCceeeeceEEEEEcCCCCCCC
Q 011450          170 GGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNG  249 (485)
Q Consensus       170 ~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~dG  249 (485)
                      +|+|+........|+.|+|+|.++..+++.+|+++...+|+.|+|+|+++...|..|+|.|++.+.++++|.||+|+++|
T Consensus       161 ~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G  240 (386)
T PRK14289        161 HGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCGGEGIVYGEEVITVKIPAGVAEG  240 (386)
T ss_pred             CCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcCCCCCCCCcEEeeeEEEEEEeCCCCCCC
Confidence            99999988889999999999999988889999998889999999999999999999999999999999999999999999


Q ss_pred             CEEEEccccCCCCCCCCCccEEEEEEeeccccccccccceEEEEEecchhhccCceEEEEccCCeEEEEeCCCCCCCCEE
Q 011450          250 ATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTV  329 (485)
Q Consensus       250 ~~Ir~~G~Gd~~~~g~~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~i  329 (485)
                      ++|+|+|+|++...++.+|||+|+|++++|+.|+|+|+||++++.|+|.+|++|+++.|+|++|+++|+||+|+++|+++
T Consensus       241 ~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldg~i~v~ip~g~~~g~~~  320 (386)
T PRK14289        241 MQLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEVPTIDGKAKVKIEAGTQPGKVL  320 (386)
T ss_pred             CEEEEeccccCCCCCCCCccEEEEEEEecCCcccccccceeEEeccCHHHHhCCCeEEeecCCceEEEEECCccCCCcEE
Confidence            99999999998777788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHHHHHHHHhh
Q 011450          330 KLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFL  374 (485)
Q Consensus       330 rl~g~G~P~~~~~~~rGDL~V~~~V~~P~~ls~~q~~ll~~l~~~  374 (485)
                      +|+|+|+|..++ +.+|||||+|+|.||+.|+++|+++|++|++.
T Consensus       321 ri~g~G~p~~~~-~~~GDL~v~~~v~~P~~l~~~q~~~l~~l~~~  364 (386)
T PRK14289        321 RLRNKGLPSVNG-YGTGDLLVNVSVYIPETLSKEEKQTLEKMENS  364 (386)
T ss_pred             EECCCCcCCCCC-CCCCcEEEEEEEEeCCCCCHHHHHHHHHHHhh
Confidence            999999997654 46899999999999999999999999999885

>PRK14283 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.8e-68  Score=556.38  Aligned_cols=329  Identities=38%  Similarity=0.711  Sum_probs=273.4

Q ss_pred             ccCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhhhccccccchhccccccCcCcccCCC
Q 011450           41 AAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGL  120 (485)
Q Consensus        41 ~~~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~~~~~~~  120 (485)
                      +..+|||++|||+++||.+|||+|||+||++||||+|+++.|+++|++|++||++|+||.+|++||+||++++.+....+
T Consensus         2 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~~~~~~~   81 (378)
T PRK14283          2 AEKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMDGFSQED   81 (378)
T ss_pred             CCcCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhcccccccccccc
Confidence            35789999999999999999999999999999999998888999999999999999999999999999998775211100


Q ss_pred             --CCCC-----CCC--Cchhhhhhh-cCCCCCCCCCCCCCCCccccc---------CCC-------CCcccccccCCCCC
Q 011450          121 --SNTS-----QGV--DPFELYSAF-FGGSDGLFGGVGEAGGINFNF---------GNK-------GNFGLDIRCGGTGA  174 (485)
Q Consensus       121 --~~~~-----~~~--dp~d~f~~f-Fgg~~g~fg~~g~~~g~~~~~---------~~~-------~~~~~di~C~GtG~  174 (485)
                        ....     .++  ++.++|+.| |++.    +..++..+.+...         ...       .....+-.|.|+|.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~f~~~~fgg~----~~~~~~kg~di~~~l~vsLed~~~G~~~~i~~~r~~~C~~C~G~G~  157 (378)
T PRK14283         82 IFNNINFEDIFQGFGFGIGNIFDMFGFGGG----SRHGPQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSRA  157 (378)
T ss_pred             cccccCccccccccccchhhhccccccCCC----CCCCccCCCCeEEEeeeeHHHHhCCcceEEEeeeeccCCCCCcccc
Confidence              0000     000  112333333 3210    0000000000000         000       00112233999999


Q ss_pred             CCCCCcccCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEeecccccCCCceeeeceEEEEEcCCCCCCCCEEEE
Q 011450          175 KSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQI  254 (485)
Q Consensus       175 ~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~dG~~Ir~  254 (485)
                      ..+.....|+.|+|+|.++..+++.+|++++..+|+.|+|+|+.+...|..|+|.|++.+.+.++|.||||+++|++|+|
T Consensus       158 ~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~l  237 (378)
T PRK14283        158 EPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCHGKGVVRETKTISVKIPAGVETGSRLRV  237 (378)
T ss_pred             CCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCCCCCCCCCceeeccceeEEEEECCCCCCCcEEEE
Confidence            98888899999999999998888889999888999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCCCCccEEEEEEeeccccccccccceEEEEEecchhhccCceEEEEccCCeEEEEeCCCCCCCCEEEEcCC
Q 011450          255 RGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQM  334 (485)
Q Consensus       255 ~G~Gd~~~~g~~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~irl~g~  334 (485)
                      +|+|++...++.+|||+|+|++++|+.|+|+|+||++++.|||.+|++|+++.|+|+||.+.|+||+|+++|++++|+|+
T Consensus       238 ~g~G~~~~~~~~~GDLiv~i~v~~~~~f~r~G~DL~~~~~Isl~eAl~G~~~~i~tldG~i~v~ip~g~~~g~~~ri~g~  317 (378)
T PRK14283        238 SGEGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVPTIDGPVELKIPAGTQSGTTFRLKGH  317 (378)
T ss_pred             eccccCCCCCCCCccEEEEEEEEcCCCEEEecCCEEEEEecCHHHHhcCCeEEEEcCCceEEEEeCCCCCCCCEEEECCC
Confidence            99999877778899999999999999999999999999999999999999999999999889999999999999999999


Q ss_pred             CCCCCCCCCCCccEEEEEEEEcCCCCChhHHHHHHHHHhh
Q 011450          335 GVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFL  374 (485)
Q Consensus       335 G~P~~~~~~~rGDL~V~~~V~~P~~ls~~q~~ll~~l~~~  374 (485)
                      |||.... ..+|||||+|+|.||+.|+++|+++|++|++.
T Consensus       318 G~p~~~~-~~~GdL~v~~~v~~P~~l~~~q~~ll~~~~~~  356 (378)
T PRK14283        318 GMPSLRW-SGKGNLYVKVKVVVPKKLSPKQKELLREFASI  356 (378)
T ss_pred             CCCCCCC-CCCCCEEEEEEEEeCCCCCHHHHHHHHHHHhh
Confidence            9997654 46899999999999999999999999999864

>PRK14292 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=3.4e-68  Score=553.33  Aligned_cols=326  Identities=35%  Similarity=0.642  Sum_probs=273.5

Q ss_pred             CCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhhhccccccchhccccccCcCcccCCCCCC
Q 011450           44 TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNT  123 (485)
Q Consensus        44 ~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~~~~~~~~~~  123 (485)
                      .|||++|||+++||.+|||+|||+||++||||+|++++|+++|++|++||++|+||.+|+.||+||+++..+..++++.+
T Consensus         2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~~~~~~~~~~   81 (371)
T PRK14292          2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAGMPGGDPFG   81 (371)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcccccccCCcccC
Confidence            49999999999999999999999999999999998888999999999999999999999999999998643211111111


Q ss_pred             CCCCCchhhhhhhcCCCCCCCCC----CCCCCCccccc---------CCCC-------CcccccccCCCCCCCCC-Cccc
Q 011450          124 SQGVDPFELYSAFFGGSDGLFGG----VGEAGGINFNF---------GNKG-------NFGLDIRCGGTGAKSSN-CIQS  182 (485)
Q Consensus       124 ~~~~dp~d~f~~fFgg~~g~fg~----~g~~~g~~~~~---------~~~~-------~~~~di~C~GtG~~~~~-~~~~  182 (485)
                      +.++|+.|+|+.|||+..  +++    .++..+.+...         ....       ....|-.|+|+|..... ...+
T Consensus        82 ~~~~d~~d~f~~~fg~~~--~~~~~~~~~~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~~  159 (371)
T PRK14292         82 GMGFDPMDIFEQLFGGAG--FGGGRGRRGPARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKT  159 (371)
T ss_pred             ccCCChHHHHHHhhCCCC--cCCCCCcccccCCCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCcccccCCCCCCCcc
Confidence            223577899999997531  111    00000000000         0000       01112239999987664 3789


Q ss_pred             CCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEeecccccCCCceeeeceEEEEEcCCCCCCCCEEEEccccCCCC
Q 011450          183 CKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDR  262 (485)
Q Consensus       183 C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~dG~~Ir~~G~Gd~~~  262 (485)
                      |+.|+|+|.+...+++.+|++++.++|+.|+|.|..+...|..|.|.|++.+.++++|.||+|+.+|++|+|+|+|+++.
T Consensus       160 C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~G~G~~~~  239 (371)
T PRK14292        160 CPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRVAGMGNEGP  239 (371)
T ss_pred             CCCCCCccEEEEEEeccCceEEEeeecCCCcccceecCCCCCCCCCceEEeecceEEEEECCCCCCCcEEEEecCcCCCC
Confidence            99999999998888888899988899999999999999999999999999999999999999999999999999999875


Q ss_pred             CCCCCccEEEEEEeeccccccccccceEEEEEecchhhccCceEEEEccCCeEEEEeCCCCCCCCEEEEcCCCCCCCCCC
Q 011450          263 RRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNP  342 (485)
Q Consensus       263 ~g~~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~irl~g~G~P~~~~~  342 (485)
                      .+ . |||||+|++++|+.|+|+|+||+++++|+|.+|++|+++.|+|++|+..|+||+|+++|++++|+|+|||..++ 
T Consensus       240 ~~-~-GDL~v~i~v~~h~~f~r~g~dL~~~~~isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~~~i~g~G~p~~~~-  316 (371)
T PRK14292        240 GG-N-GDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDGPQVIEVKPGTQHGDLHRLRGQGMPRLQG-  316 (371)
T ss_pred             CC-C-CCEEEEEEEecCCccccchhceeEEeccCHHHHhCCCeEEEECCCCCEEEecCCCcCCCcEEEECCCCCCCCCC-
Confidence            44 3 99999999999999999999999999999999999999999999998889999999999999999999997654 


Q ss_pred             CCCccEEEEEEEEcCCCCChhHHHHHHHHHhh
Q 011450          343 SVRGDHLFIVNVLIPKDISDPERALVEEIAFL  374 (485)
Q Consensus       343 ~~rGDL~V~~~V~~P~~ls~~q~~ll~~l~~~  374 (485)
                      ..+|||||+|+|.+|+.|+++|+++|++|++.
T Consensus       317 ~~~GDL~V~~~v~~P~~l~~~q~~ll~~~~~~  348 (371)
T PRK14292        317 AGTGDLIVEYEIAVPKQLSPEAREALEAYARA  348 (371)
T ss_pred             CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            35899999999999999999999999999864

>PRK14293 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.4e-67  Score=549.06  Aligned_cols=331  Identities=44%  Similarity=0.798  Sum_probs=279.3

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhhhccccccchhccccccCcCcccCCCCC
Q 011450           43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSN  122 (485)
Q Consensus        43 ~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~~~~~~~~~  122 (485)
                      ..|||+||||+++||.+|||+|||+||++||||+|+++.|+++|++|++||+||+||.+|++||+||++++.++.+.++.
T Consensus         2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~~~~~~~~~   81 (374)
T PRK14293          2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEAGVSGAAGFPDM   81 (374)
T ss_pred             CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhccccccccCCCcCCc
Confidence            47999999999999999999999999999999999988899999999999999999999999999999877532110000


Q ss_pred             CCCCCCchhhhhhhcCCCCCCCCCCC-------CCCCcccc--------c-CCCC-------CcccccccCCCCCCCCCC
Q 011450          123 TSQGVDPFELYSAFFGGSDGLFGGVG-------EAGGINFN--------F-GNKG-------NFGLDIRCGGTGAKSSNC  179 (485)
Q Consensus       123 ~~~~~dp~d~f~~fFgg~~g~fg~~g-------~~~g~~~~--------~-~~~~-------~~~~di~C~GtG~~~~~~  179 (485)
                      +.. .++.|+|++||+++++ +++.+       +..+.+..        . ....       ....|-.|.|+|+.....
T Consensus        82 ~~~-~~~~d~f~~~fg~~~~-~~~~~~~~~~~~~~kg~di~~~l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~  159 (374)
T PRK14293         82 GDM-GGFADIFETFFSGFGG-AGGQGGRRRRRGPQRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAKPGTG  159 (374)
T ss_pred             ccc-cchHHHHHHHhcccCC-CCCCCccccccCccCCCCeEEEEEeeHHHHhCCceEEEEeeccccCCCCCCcCCCCCCC
Confidence            101 1234789999964211 11000       00000000        0 0000       011222399999998888


Q ss_pred             cccCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEeecccccCCCceeeeceEEEEEcCCCCCCCCEEEEccccC
Q 011450          180 IQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGN  259 (485)
Q Consensus       180 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~dG~~Ir~~G~Gd  259 (485)
                      ..+|+.|+|+|.++..+++++|++++.++|+.|.|.|+++...|..|.|.|++.+.++++|.||||+++|++|+|+|+|+
T Consensus       160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~IppG~~~G~~i~l~g~G~  239 (374)
T PRK14293        160 PTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDACGGQGVKQVTKKLKINIPAGVDTGTRLRVSGEGD  239 (374)
T ss_pred             CeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEeccCCCCCCCCcccccceEEEEEeCCCCCCCCEEEEccCcc
Confidence            89999999999998888899999998999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCccEEEEEEeeccccccccccceEEEEEecchhhccCceEEEEccCCeEEEEeCCCCCCCCEEEEcCCCCCCC
Q 011450          260 FDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDI  339 (485)
Q Consensus       260 ~~~~g~~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~irl~g~G~P~~  339 (485)
                      +...+..+|||+|+|++++|+.|+|+|+||+++++|||.||++|+++.|+|+||+++|+||+++++|++++|+|+|||..
T Consensus       240 ~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldG~~~i~ip~~~~~g~~~ri~g~G~p~~  319 (374)
T PRK14293        240 AGLRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDTVDGPVELTIPAGTQPNTVLTLENKGVPRL  319 (374)
T ss_pred             CCCCCCCCcCEEEEEEEeCCCccChhhhceEEEeccCHHHHhCCCEEEecCCCCCEEEEeCCCCCCCCEEEECCCCCCCC
Confidence            87667789999999999999999999999999999999999999999999999988899999999999999999999986


Q ss_pred             CCCCCCccEEEEEEEEcCCCCChhHHHHHHHHHhhc
Q 011450          340 NNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLK  375 (485)
Q Consensus       340 ~~~~~rGDL~V~~~V~~P~~ls~~q~~ll~~l~~~~  375 (485)
                      +.++.+|||||+|+|++|+.|+++|+++|++|+++.
T Consensus       320 ~~~~~~GDL~v~~~v~~P~~l~~~~~~l~~~l~~~~  355 (374)
T PRK14293        320 GNPVARGDHLITVKVKIPTRISDEERELLEKLAKIK  355 (374)
T ss_pred             CCCCCcCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence            654568999999999999999999999999998764

>PRK14290 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=3e-67  Score=544.89  Aligned_cols=328  Identities=34%  Similarity=0.644  Sum_probs=268.5

Q ss_pred             CCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--cHHHHHHHHHHHHhhhccccccchhccccccCcCcccCCCC
Q 011450           44 TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSP--GAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLS  121 (485)
Q Consensus        44 ~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~~--~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~~~~~~~~  121 (485)
                      +|||+||||+++||.+|||+|||+||++||||+|++.  .|+++|++|++||++|+||.+|+.||+||++++++++++.+
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~~~~~~~~   82 (365)
T PRK14290          3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGAGGSNFN   82 (365)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcccccCCCCcc
Confidence            7999999999999999999999999999999999752  68999999999999999999999999999987753211100


Q ss_pred             CCC--CCCCchhhhhhhcCCCCCC--CCCCCCCC-----CcccccC---------CC-------CCcccccccCCCCCCC
Q 011450          122 NTS--QGVDPFELYSAFFGGSDGL--FGGVGEAG-----GINFNFG---------NK-------GNFGLDIRCGGTGAKS  176 (485)
Q Consensus       122 ~~~--~~~dp~d~f~~fFgg~~g~--fg~~g~~~-----g~~~~~~---------~~-------~~~~~di~C~GtG~~~  176 (485)
                      .++  ...++.|+|+.|||+..+.  |++.+...     +.+....         ..       .....+-.|+|+|+..
T Consensus        83 ~~~~~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~di~~~l~lsLee~~~G~~~~i~~~r~~~C~~C~G~g~~~  162 (365)
T PRK14290         83 WDNFTHFSDINDIFNQIFGGNFGSDFFSGFGNQQSTRNIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSGTGAKN  162 (365)
T ss_pred             ccccccccchhHHHHHHhcCccccccccccccccCCCCCCCCEEEEEEecHHHhcCCEEEEEEeeecccCCCCccccCCC
Confidence            000  0125678999999742110  11100000     0000000         00       0001122399999887


Q ss_pred             CCCcccCCCCCCCCeeeeeeecCCceee--eEeecccCCCCcEEEeecccccCCCceeeeceEEEEEcCCCCCCCCEEEE
Q 011450          177 SNCIQSCKACWGRGGVLKTQRTPFGLIS--QVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQI  254 (485)
Q Consensus       177 ~~~~~~C~~C~G~G~~~~~~~~~~g~~~--~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~dG~~Ir~  254 (485)
                      . ...+|+.|+|+|.+...+.  +|++.  ...+|+.|+|.|+++...|..|+|.|++.+.++++|.||||+.+|++|+|
T Consensus       163 ~-~~~~C~~C~G~G~~~~~~~--~g~~~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~  239 (365)
T PRK14290        163 G-KLITCPTCHGTGQQRIVRG--QGFFRMVTVTTCRTCGGRGRIPEEKCPRCNGTGTVVVNEDISVKIPKGATDNLRLRV  239 (365)
T ss_pred             C-CCccCCCCCCcCEEEEEec--cCeEEEEEEEeCCCCCCceeEccCCCCCCCCceeEEEeeEEEEEECCCCCCCcEEEE
Confidence            5 6789999999998766553  45553  35799999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCCCCccEEEEEEeeccccccccccceEEEEEecchhhccCceEEEEccCCeEEEEeCCCCCCCCEEEEcCC
Q 011450          255 RGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQM  334 (485)
Q Consensus       255 ~G~Gd~~~~g~~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~irl~g~  334 (485)
                      +|+|+.  .++.||||||+|++++|+.|+|+|+||+++++|||.+|++|+++.|+|++|.++|+||+|+++|++++|+|+
T Consensus       240 ~g~G~~--~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~~~~g~i~V~Ip~g~~~g~~iri~g~  317 (365)
T PRK14290        240 KGKGQS--YGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFREKYNLKIPEGTQPGEVLKIKGA  317 (365)
T ss_pred             ccccCC--CCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEEcCCceEEEEECCccCCCcEEEECCC
Confidence            999986  578999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCccEEEEEEEEcCCCCChhHHHHHHHHHhhcCC
Q 011450          335 GVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIAFLKSP  377 (485)
Q Consensus       335 G~P~~~~~~~rGDL~V~~~V~~P~~ls~~q~~ll~~l~~~~~~  377 (485)
                      |||..++ ..+|||||+|+|.+|+.|+++|+++|++|+.+...
T Consensus       318 G~p~~~~-~~~GDL~V~~~V~~P~~l~~~~~~ll~~~~~~~~~  359 (365)
T PRK14290        318 GMPHLNG-HGSGDLLVRINVEVPKRLTSKQKELIREFFDIKEN  359 (365)
T ss_pred             CCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHhhhc
Confidence            9997654 36899999999999999999999999999876644

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.6e-63  Score=496.81  Aligned_cols=313  Identities=36%  Similarity=0.644  Sum_probs=264.2

Q ss_pred             cCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhhhccccccchhccccccCcCcccCCCC
Q 011450           42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLS  121 (485)
Q Consensus        42 ~~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~~~~~~~~  121 (485)
                      .++.||+||||+++||++|||+|||+||++||||+|++  +.++|++|++||||||||+||++||+||+++++.++++++
T Consensus         2 ~~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~--~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~~~~g   79 (337)
T KOG0712|consen    2 KNTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD--AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGGGGGG   79 (337)
T ss_pred             cccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc--HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccCCCCC
Confidence            46799999999999999999999999999999999965  8899999999999999999999999999999976554322


Q ss_pred             CCCCCCCchhhhhhhcCCCCCCCCCCCCCCCccc------------ccCC----CCCcccccccCCCCCCCCCCcccCCC
Q 011450          122 NTSQGVDPFELYSAFFGGSDGLFGGVGEAGGINF------------NFGN----KGNFGLDIRCGGTGAKSSNCIQSCKA  185 (485)
Q Consensus       122 ~~~~~~dp~d~f~~fFgg~~g~fg~~g~~~g~~~------------~~~~----~~~~~~di~C~GtG~~~~~~~~~C~~  185 (485)
                      .+       . |++||+.  |++++.+...+-+.            ....    -.....+-.|.|.|.+++... .|+.
T Consensus        80 ~~-------~-f~~~F~~--g~~~~~~~~rg~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsGgksg~~~-~C~~  148 (337)
T KOG0712|consen   80 FG-------G-FSQFFGF--GGNGGRGRQRGKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSGGKSGSAP-KCTT  148 (337)
T ss_pred             Cc-------c-HHHhccC--CCcCccccccCCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCCCCCCCCC-CCCC
Confidence            11       1 8888861  22221110000000            0000    001122333999998877654 8999


Q ss_pred             CCCCCeeeeeeecCCceeeeE-eecccCCCCcEEE--eecccccCCCceeeeceEEEEEcCCCCCCCCEEEEccccCCCC
Q 011450          186 CWGRGGVLKTQRTPFGLISQV-STCSKCGGDGKII--IDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDR  262 (485)
Q Consensus       186 C~G~G~~~~~~~~~~g~~~~~-~~C~~C~G~G~~i--~~~C~~C~G~G~v~~~k~l~V~IP~Gv~dG~~Ir~~G~Gd~~~  262 (485)
                      |.|+|..+...+..+|+.++. ..|..|+|+|.++  .+.|+.|.|.+++.+.+.++|.|++|+.++++|.+.|++++..
T Consensus       149 C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~~kkil~v~V~~g~~~~~ki~f~geadea~  228 (337)
T KOG0712|consen  149 CRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLKDRCKTCSGAKVVREKKILEVHVEPGMPHGQKITFKGEADEAP  228 (337)
T ss_pred             CCCCCceeEEEeccccccccceeEeccCCCccccccccccCcccccchhhhhhheeeccccCCCcccceeeeeeeeeecC
Confidence            999999999999999888765 6999999999984  4569999999999999999999999999999999999999864


Q ss_pred             CCCCCccEEEEEEeeccccccccccceEEEEEecchhhccCceEEEEccCCe-EEEEeCCC--CCCCCEEEEcCCCCCCC
Q 011450          263 RRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGM-KDLRIPSG--VQPGDTVKLQQMGVPDI  339 (485)
Q Consensus       263 ~g~~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~-~~l~Ip~g--~q~G~~irl~g~G~P~~  339 (485)
                       +..|||++|.|..++|+.|.|+|+||++..+|+|.||++|+...+.|+||+ +.+.++||  +.||++++|.|+|||..
T Consensus       229 -g~~pgD~vl~i~~k~h~~F~Rrg~dL~~~~~i~l~eal~G~~~~~~~ldGr~l~~~~~pg~vi~~~~~~~v~~~gmp~~  307 (337)
T KOG0712|consen  229 -GTKPGDVVLLIDQKEHPGFDRRGSDLYRKLTISLVEALCGFQRVWETLDGRLLKLSSKPGEVISPGDTKRVEGEGMPIF  307 (337)
T ss_pred             -CCcCccEEEEecccccccceecccccceeeecchhhccccceEEEEccCCceEEEecCCCceeChhHEEeecCCCcccc
Confidence             566999999999999999999999999999999999999999999999997 68888888  89999999999999999


Q ss_pred             CCCCCCccEEEEEEEEcCCCCChhHHHHHHHH
Q 011450          340 NNPSVRGDHLFIVNVLIPKDISDPERALVEEI  371 (485)
Q Consensus       340 ~~~~~rGDL~V~~~V~~P~~ls~~q~~ll~~l  371 (485)
                      +++  +|||||+|+|+||+ +++++...|+++
T Consensus       308 ~~~--~g~lyi~~~v~fp~-~~~~~~~~l~~~  336 (337)
T KOG0712|consen  308 RNP--KGDLYIKFEVKFPK-LSPSQLKMLEDL  336 (337)
T ss_pred             cCC--CCcEEEEEEEEcCC-CChHHHHHHHhh
Confidence            885  99999999999999 999998888775

>PRK14299 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=7.5e-55  Score=439.45  Aligned_cols=275  Identities=36%  Similarity=0.630  Sum_probs=213.8

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhhhccccccchhccccccCcCcccCC---
Q 011450           43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDG---  119 (485)
Q Consensus        43 ~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~~~~~~---  119 (485)
                      .+|||+||||+++||.+|||+|||+||++||||+|+++.++++|++|++||++|+||++|+.||+||++++..+..+   
T Consensus         3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~~~~~~~~~~~   82 (291)
T PRK14299          3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAASAGWQGPPP   82 (291)
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCccccccccCCCC
Confidence            57999999999999999999999999999999999888899999999999999999999999999999865432110   


Q ss_pred             --CCCCC-CC---CCchhhhhhhcCCCCCCCCCCCCCCCccccc-CCCCCcccccccCCCCCCCCCCcccCCCCCCCCee
Q 011450          120 --LSNTS-QG---VDPFELYSAFFGGSDGLFGGVGEAGGINFNF-GNKGNFGLDIRCGGTGAKSSNCIQSCKACWGRGGV  192 (485)
Q Consensus       120 --~~~~~-~~---~dp~d~f~~fFgg~~g~fg~~g~~~g~~~~~-~~~~~~~~di~C~GtG~~~~~~~~~C~~C~G~G~~  192 (485)
                        ++.+. .+   .++.|+|+.|||+. +++++   .+. .+.. .....++.|+.                        
T Consensus        83 ~~~~~~~~~~~~~~~~~d~f~~~fgg~-~~~~~---~g~-~~~~~~~~~~~g~dl~------------------------  133 (291)
T PRK14299         83 GPPGGGDFSGFNVGDFSDFFQQLFGGR-GGFGG---FGD-LFGSVGRRARKGRDLE------------------------  133 (291)
T ss_pred             CCCCCCCccccCcCCHHHHHHHHhCCC-CCCCC---ccc-ccccccCCCCCCCCEE------------------------
Confidence              00010 01   24557888888642 11111   000 0000 00000111111                        


Q ss_pred             eeeeecCCceeeeEeecccCCCCcEEEeecccccCCCceeeeceEEEEEcCCCCCCCCEEEEccccCCCCCCCCCccEEE
Q 011450          193 LKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFV  272 (485)
Q Consensus       193 ~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~dG~~Ir~~G~Gd~~~~g~~~GDL~v  272 (485)
                      +. .        ..+.-..+.|.-+.+..            ..++++|.||||+++|++|+++|+|+..      |||+|
T Consensus       134 ~~-l--------~isL~ea~~G~~~~i~l------------~g~~~~V~Ip~G~~~G~~ir~~g~G~~~------GDL~v  186 (291)
T PRK14299        134 AE-L--------PLTLEEAYRGGEKVVEV------------AGERLSVRIPPGVREGQVIRLAGKGRQG------GDLYL  186 (291)
T ss_pred             EE-E--------EecHHHHhCCCeEEEee------------CCEEEEEecCCCcCCCcEEEECCCCCCC------CCEEE
Confidence            00 0        12223344444333321            2367999999999999999999999863      99999


Q ss_pred             EEEeeccccccccccceEEEEEecchhhccCceEEEEccCCeEEEEeCCCCCCCCEEEEcCCCCCCCCCCCCCccEEEEE
Q 011450          273 ALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIV  352 (485)
Q Consensus       273 ~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~irl~g~G~P~~~~~~~rGDL~V~~  352 (485)
                      +|++++|+.|+|+|+||+++++|||.+|++|+++.|+|+||.++|+||+++++|++++|+|+|||..  ++.+|||||+|
T Consensus       187 ~i~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~v~tldG~~~v~ip~~~~~g~~~rl~g~G~p~~--~~~~GDL~v~~  264 (291)
T PRK14299        187 VVRLLPHPVFRLEGDDLYATVDVPAPIAVVGGKVRVMTLDGPVEVTIPPRTQAGRKLRLKGKGWPRG--PAGRGDQYAEV  264 (291)
T ss_pred             EEEEcCCCCeEEECCEEEEEEecCHHHHhCCCEEEEECCCCCEEEEeCCCcCCCCEEEECCCCCCCC--CCCCCCEEEEE
Confidence            9999999999999999999999999999999999999999998999999999999999999999963  34689999999


Q ss_pred             EEEcCCCCChhHHHHHHHHHhhc
Q 011450          353 NVLIPKDISDPERALVEEIAFLK  375 (485)
Q Consensus       353 ~V~~P~~ls~~q~~ll~~l~~~~  375 (485)
                      +|.+|+.|+++|+++|++|+++.
T Consensus       265 ~V~~P~~l~~~~~~~l~~l~~~~  287 (291)
T PRK14299        265 RITIPTRPTPEEERLYKQLAELY  287 (291)
T ss_pred             EEECCCCCCHHHHHHHHHHHhhh
Confidence            99999999999999999998764

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=100.00  E-value=5e-54  Score=436.39  Aligned_cols=285  Identities=28%  Similarity=0.464  Sum_probs=225.2

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhhhccccccchhccccccC----cCcccC
Q 011450           43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAG----ITGEYD  118 (485)
Q Consensus        43 ~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~----~~~~~~  118 (485)
                      .+|||++|||+++||.+|||+|||+||++||||+|+++.++++|++|++||++|+||.+|+.||+||+..    +.+..+
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~~~~~~~~~~~~~   82 (306)
T PRK10266          3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNRQFQ   82 (306)
T ss_pred             cCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhccccCcccccccc
Confidence            3799999999999999999999999999999999988889999999999999999999999999998642    221111


Q ss_pred             CCCCCCC-CCCchhhhhhhcCCCCCCCCCCCCCCCcccccCCCCCcccccccCCCCCCCCCCcccCCCCCCCCeeeeeee
Q 011450          119 GLSNTSQ-GVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRCGGTGAKSSNCIQSCKACWGRGGVLKTQR  197 (485)
Q Consensus       119 ~~~~~~~-~~dp~d~f~~fFgg~~g~fg~~g~~~g~~~~~~~~~~~~~di~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~  197 (485)
                      .+++... ..++.++|+.|||+.    ++..        ......++.|+.                        +.   
T Consensus        83 ~~~~~~~~~~~~~~~f~~~~g~~----~~~~--------~~~~~~kg~di~------------------------~~---  123 (306)
T PRK10266         83 HGDGQSFNAEDFDDIFSSIFGQH----ARQS--------RQRPAARGHDIE------------------------IE---  123 (306)
T ss_pred             cCCCCCCCCCCHHHHHHHHhCCC----CCCC--------CCCCCCCCCceE------------------------EE---
Confidence            0011011 124568888888631    1000        000011122221                        00   


Q ss_pred             cCCceeeeEeecccCCCCcEEEeecccccCCCceee--eceEEEEEcCCCCCCCCEEEEccccCCCCCCCCCccEEEEEE
Q 011450          198 TPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQ--SKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALH  275 (485)
Q Consensus       198 ~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~--~~k~l~V~IP~Gv~dG~~Ir~~G~Gd~~~~g~~~GDL~v~I~  275 (485)
                            ...+.-..+.|..+.+......|.|.|.+.  ..++++|.||+|+++|++|+++|+|++..++..+|||+|+|+
T Consensus       124 ------v~isLee~~~G~~k~i~~~~~~~~g~G~~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~v~i~  197 (306)
T PRK10266        124 ------VAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIH  197 (306)
T ss_pred             ------EEEEHHHhcCCceEEEEEecccccCCCeEEEeeeEEEEEEECCCCcCCcEEEEecCCcCCCCCCCCccEEEEEE
Confidence                  012333455555555544445566666443  236899999999999999999999999877788999999999


Q ss_pred             eeccccccccccceEEEEEecchhhccCceEEEEccCCeEEEEeCCCCCCCCEEEEcCCCCCCCCCCCCCccEEEEEEEE
Q 011450          276 VDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVL  355 (485)
Q Consensus       276 v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~irl~g~G~P~~~~~~~rGDL~V~~~V~  355 (485)
                      ++||+.|+|+|+||+++++|||.+|++|+++.|+|++|++.|+||+++++|++++|+|+|||..+   .+|||||+|+|.
T Consensus       198 v~ph~~f~r~g~DL~~~~~Isl~~al~G~~~~i~~~~g~v~v~ip~g~~~g~~~ri~g~G~p~~~---~~GdL~v~~~v~  274 (306)
T PRK10266        198 IAPHPLFDIVGQDLEIVVPLAPWEAALGAKVTVPTLKESILLTIPPGSQAGQRLRVKGKGLVSKK---QTGDLYAVLKIV  274 (306)
T ss_pred             EcCCCCeEEeCCceEEEEecCHHHHhCCCEEEeeCCCccEEEEeCCCcCCCCEEEECCCCCCCCC---CCCCEEEEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999642   589999999999


Q ss_pred             cCCCCChhHHHHHHHHHhhc
Q 011450          356 IPKDISDPERALVEEIAFLK  375 (485)
Q Consensus       356 ~P~~ls~~q~~ll~~l~~~~  375 (485)
                      +|+.|+++|+++|++|+.+.
T Consensus       275 ~P~~l~~~q~~l~~~l~~~~  294 (306)
T PRK10266        275 MPPKPDEKTAALWQQLADAQ  294 (306)
T ss_pred             CCCCCCHHHHHHHHHHHhhc
Confidence            99999999999999998764

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=100.00  E-value=6.8e-40  Score=353.57  Aligned_cols=143  Identities=17%  Similarity=0.156  Sum_probs=122.7

Q ss_pred             ccCCCCcEEEeecccc--cCCCceeeeceEEEEEcCCCCCCCCEEEEccccCCCCCCCCCccEEEEEEeecccccccccc
Q 011450          210 SKCGGDGKIIIDHCRR--CGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGL  287 (485)
Q Consensus       210 ~~C~G~G~~i~~~C~~--C~G~G~v~~~k~l~V~IP~Gv~dG~~Ir~~G~Gd~~~~g~~~GDL~v~I~v~~h~~F~R~G~  287 (485)
                      ..+.|.-+.++..-..  |.|...+++.++++|.||||+++|++|+|+|+|+.+. ++ +|||||+|++++|+.|+|+|+
T Consensus       669 eLY~G~tKkIKitR~V~~g~G~ktvkE~ktLeVkIPpGVkdGqkIRf~GeGDegp-gg-~GDLyVvIkVKPHp~FrRdGd  746 (871)
T TIGR03835       669 LFFNNQIKEIKYTRHTVDGNTESTTNEAITLEIQLPITSQLNISAIFKGFGHDFG-NG-CGDLKVVFKVIPSNFFQIKND  746 (871)
T ss_pred             HHhCCCeEEEEEEEeeccCCCcceeeeeEEEEEecCCCCCCCCEEEeccccCCCC-CC-CCCEEEEEEEcCCCCeEEECC
Confidence            4566666666432222  3333456677899999999999999999999999864 33 499999999999999999999


Q ss_pred             ceEEEEEecchhhccCceEEEEccCCeEEEEeCCCCCCCCEEEEcCCCCCCCCCCCCCccEEEEEEEEc
Q 011450          288 NLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLI  356 (485)
Q Consensus       288 DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~irl~g~G~P~~~~~~~rGDL~V~~~V~~  356 (485)
                      ||+++++|+|.+||+|+++.|+|+||++.|+||+|+++|++++|+|+|||..+  +.+|||||+|+|.-
T Consensus       747 DL~~~v~ISL~EALLGgtIeIpTLDGrVkLkIPpgTqpGqvLRIkGKGMP~~~--~~RGDLyV~f~V~~  813 (871)
T TIGR03835       747 GLHVAALVDPLVAYNGGIIDVFGPNKLFNVRIPGGIKVNDQVIFKDLGLTKTK--YDKGSLIVHLYYSS  813 (871)
T ss_pred             eEEEEEecCHHHHhcCCEEEeeCCCCCEEEeeCCCCCCCcEEEECCCCCCCCC--CCCCCEEEEEEEee
Confidence            99999999999999999999999999989999999999999999999999532  46899999999974

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.9e-41  Score=336.83  Aligned_cols=291  Identities=32%  Similarity=0.487  Sum_probs=217.7

Q ss_pred             ccCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCC-CccHHHHHHHHHHHHhhhccccccchhccccccCcCcccCC
Q 011450           41 AAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDG  119 (485)
Q Consensus        41 ~~~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~-~~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~~~~~~  119 (485)
                      ...+|||++|||+++||..|||+||||||+|||||+|+ +|.|.++|++|+.||||||||++|+.||+||++++...+..
T Consensus        13 ~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~~~~   92 (336)
T KOG0713|consen   13 LAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDENKD   92 (336)
T ss_pred             hcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhcccccc
Confidence            45799999999999999999999999999999999999 58999999999999999999999999999999999864321


Q ss_pred             CCCCCCCCCchhhhhhhcCCCCCCCCCCCCCCCcccccCCCCCcccccc--------------------cCCCCCCC-CC
Q 011450          120 LSNTSQGVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIR--------------------CGGTGAKS-SN  178 (485)
Q Consensus       120 ~~~~~~~~dp~d~f~~fFgg~~g~fg~~g~~~g~~~~~~~~~~~~~di~--------------------C~GtG~~~-~~  178 (485)
                      +.++..+   .++|+.||+..+..+++..       .... ..++.++.                    +.|-.... ++
T Consensus        93 ~~~g~~~---~~~f~~~f~dfg~~~~g~~-------~~e~-~~~g~~V~~~~e~~~~h~y~~~~~e~~r~~~v~~~~~g~  161 (336)
T KOG0713|consen   93 GEGGGGG---NDIFSAFFGDFGVTVGGNP-------LEEA-LPKGSDVSSDLEKQLEHFYMGNFVEEVREKGVYKPAPGT  161 (336)
T ss_pred             cccCCcc---cchHHHhhcccccccCCCc-------ccCC-CCCCceEEeehhhchhhhhcccHHHHHhccCceeecCcc
Confidence            1111111   6778888865432222210       0000 11222221                    11111000 00


Q ss_pred             CcccCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEe-ecccccCCCceeeeceEEEEEcCCCCCCCCEEEEccc
Q 011450          179 CIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIII-DHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGE  257 (485)
Q Consensus       179 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~-~~C~~C~G~G~v~~~k~l~V~IP~Gv~dG~~Ir~~G~  257 (485)
                      .     .|+-.- .+             ..+..|.|....+. ..|..|.+.+...+...+++.+..|+.+|....+..+
T Consensus       162 ~-----~~~~~~-~~-------------~~~~~~~g~~~~~q~~~~~~~~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~  222 (336)
T KOG0713|consen  162 R-----KCNCRL-EM-------------FTQQEGPGRFQMLQEAVCDECPNVKLVLEEDPLEVEFERGDADGPEEIFELE  222 (336)
T ss_pred             c-----ccCChh-hh-------------eeeccCCChhhhhhhhhhccCCccceeecCCceeeeeeecccCCceeeeecc
Confidence            0     111110 11             12233333333322 2377777777778899999999999999999999999


Q ss_pred             cCCCCCCCCCccEEEEEEeeccccccccccceEEEEEecchhhccCceEEEEccCCe-EEEEeCCCCCCCCEEEEcCCCC
Q 011450          258 GNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGM-KDLRIPSGVQPGDTVKLQQMGV  336 (485)
Q Consensus       258 Gd~~~~g~~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~-~~l~Ip~g~q~G~~irl~g~G~  336 (485)
                      |.+.. -+.+||+.+.+..-+|+.|.|+++|+++++.|++.+++.|..+++.++|+. +.++--.++.|+..++..++||
T Consensus       223 ~~~h~-~~~~gD~~f~~~~y~~~~~~~k~~~~~~n~~~sl~~~~v~~~~e~~~~d~~~~~~~r~~~~~p~~~~~~~~~~~  301 (336)
T KOG0713|consen  223 GEPHI-DGVPGDLFFKIVSYTHPRFERKGDDLYTNVTISLEAALVGFEMEILHLDGHYVEVSRKKITWPGARTRKKGEGM  301 (336)
T ss_pred             CCcce-ecccCCceeeeEEecccceecCccchhhHHHHHHHHHHHHHHHHhhccchhhhhhhhhhccccchhhhhhhccc
Confidence            98754 478999999999999999999999999999999999999999999999997 3455556788999999999999


Q ss_pred             CCCCCCCCCccEEEEEEEEcCCC-CCh
Q 011450          337 PDINNPSVRGDHLFIVNVLIPKD-ISD  362 (485)
Q Consensus       337 P~~~~~~~rGDL~V~~~V~~P~~-ls~  362 (485)
                      |........|+++++|.+.+|.. ++.
T Consensus       302 ~~l~~~~~~~~~~~t~~~~~~~~~~~~  328 (336)
T KOG0713|consen  302 PLLKNRNEKGNLYVTFDVEFPKSSLSD  328 (336)
T ss_pred             hhhhccchhcceeEEecccCcccccch
Confidence            98877778999999999999965 554

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.6e-38  Score=319.27  Aligned_cols=234  Identities=41%  Similarity=0.722  Sum_probs=190.6

Q ss_pred             CcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhhhccccccchhccccccCcCcccCCCCCCC
Q 011450           45 DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTS  124 (485)
Q Consensus        45 d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~~~~~~~~~~~  124 (485)
                      |||+||||+++|++.|||+||++||++||||.|.+++|+++|++|.+|||+|+|++||++||++|..+.   +      +
T Consensus        44 d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~~---~------~  114 (288)
T KOG0715|consen   44 DYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQH---G------E  114 (288)
T ss_pred             chhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhcc---c------c
Confidence            999999999999999999999999999999999999999999999999999999999999999998751   1      1


Q ss_pred             CCCCchhhhhhhcCC-CCCCCCCC-CCC-CCcccccCCCC-Cc-------ccccccCCCCCCCCCCcccCCCCCCCCeee
Q 011450          125 QGVDPFELYSAFFGG-SDGLFGGV-GEA-GGINFNFGNKG-NF-------GLDIRCGGTGAKSSNCIQSCKACWGRGGVL  193 (485)
Q Consensus       125 ~~~dp~d~f~~fFgg-~~g~fg~~-g~~-~g~~~~~~~~~-~~-------~~di~C~GtG~~~~~~~~~C~~C~G~G~~~  193 (485)
                      .+.||+++|..+|++ +.....+. ... -...+...... .+       ..+..|.|.|+..+.....|..|.|.|.+.
T Consensus       115 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~f~~A~~g~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~  194 (288)
T KOG0715|consen  115 FGGNPFDVFLEFFGGKMNKRVPDKDQYYDLSLDFKEAVRGSKKRISFNVLSDCETCFGSGAEEGAKRESCKTCSGRGLVS  194 (288)
T ss_pred             ccCCccchHHHhhcccccccccCcccccccccCHHHHhhccccceEEEeecccccccCcCcccccccccchhhhCccccc
Confidence            123789999999976 21111100 000 00001000000 01       122239999999999999999999999776


Q ss_pred             eeeecCCceeeeEeecccCCCCcEEEeecccccCCCceeeeceEEEEEcCCCCCCCCEEEEccccCCCCCCCCCccEEEE
Q 011450          194 KTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVA  273 (485)
Q Consensus       194 ~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~dG~~Ir~~G~Gd~~~~g~~~GDL~v~  273 (485)
                      ...+.+|.+.    +|..|+|.|.+....|..|.|.|.+...+.+.|.+|+|+.++.+|++.+.|..        ||+|.
T Consensus       195 ~~~~~~f~~~----~~~~c~~~~~~~~~~c~~~~g~~~v~~~k~i~i~~~~g~~~~~~l~~~~~~~~--------~l~v~  262 (288)
T KOG0715|consen  195 NPKEDPFILY----TCSYCLGRGLVLRDNCQACSGAGQVRRAKDIMIVLPAGVRSADTLRFAGHGND--------DLFVR  262 (288)
T ss_pred             ccccCCccee----ecccccccceeccchHHHhhcchhhhhheeEEeecCcccccccEEEEecCCcc--------eEEEE
Confidence            6555555432    89999999999999999999999999999999999999999999999999764        99999


Q ss_pred             EEeeccccccccccceEEEEEecchh
Q 011450          274 LHVDEKQGIHRDGLNLFSKISVDYTE  299 (485)
Q Consensus       274 I~v~~h~~F~R~G~DL~~~~~Isl~e  299 (485)
                      +.|.+++.|+|+|.|+++++.|++.|
T Consensus       263 ~~v~~~~~~~r~~~~i~~~~~i~~~~  288 (288)
T KOG0715|consen  263 LIVAKSPSFRREGKDILYDAIISFTQ  288 (288)
T ss_pred             EEeccCcccccccCcccccccccccC
Confidence            99999999999999999999999865

>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=7.1e-22  Score=195.93  Aligned_cols=289  Identities=29%  Similarity=0.379  Sum_probs=182.3

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--cHHHHHHHHHHHHhhhccccccchhccccccCcCcccCCC
Q 011450           43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSP--GAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGL  120 (485)
Q Consensus        43 ~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~~--~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~~~~~~~  120 (485)
                      ..|||++|+|.++|+.+||++||++||++||||+|+.+  .++++|++|++||++|+|+.+|..||+||++++.+.....
T Consensus         2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~~~~~~~   81 (306)
T KOG0714|consen    2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLKGGGSFS   81 (306)
T ss_pred             cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCccccccCCCCC
Confidence            57999999999999999999999999999999999876  6667899999999999999999999999997766521111


Q ss_pred             CC--C----CCCCCchhhhhhhcCCCCCCCCC-CC--CCCCcccccCCCCCcccccccCCCCCCCCCCcccCCCCCCCCe
Q 011450          121 SN--T----SQGVDPFELYSAFFGGSDGLFGG-VG--EAGGINFNFGNKGNFGLDIRCGGTGAKSSNCIQSCKACWGRGG  191 (485)
Q Consensus       121 ~~--~----~~~~dp~d~f~~fFgg~~g~fg~-~g--~~~g~~~~~~~~~~~~~di~C~GtG~~~~~~~~~C~~C~G~G~  191 (485)
                      ..  .    ....++.+.|..|||........ .+  +.... .........+....+....   ......+..+.....
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  157 (306)
T KOG0714|consen   82 SSFTSELFYFLFRKPDKDFYEFFGVSSPFSGSKKGYRDKNAA-PGEEAFKSEGKAFQSLYGP---KRKQYDSSGSDRSAR  157 (306)
T ss_pred             CCCCCCcceeccCchhhhHHHHhCCCCCCccccccCCccccc-cCccccccccccccccCCC---ccccccccccccccc
Confidence            10  1    11235677888888743211110 00  00000 0000000000000000000   000000000000000


Q ss_pred             eeeeeecCCceeeeEeecccCCCCcEEEeecccccCCCceeeeceEEEEEcCCCCCCCCEEEEccccCCCCCCCCCccEE
Q 011450          192 VLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLF  271 (485)
Q Consensus       192 ~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~dG~~Ir~~G~Gd~~~~g~~~GDL~  271 (485)
                      ........ ........+..|.-..++.........-. .......+.+.+.+++..|..+....+|+.... ..|-+++
T Consensus       158 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~  234 (306)
T KOG0714|consen  158 QSPPVEHP-LRVSLEDLYKGESKKMKISRQSFTSNGRE-GSSRSRYLSISIKPGWKEGTKITFPEEGDEEPG-ILPADIE  234 (306)
T ss_pred             CCCCccCC-cceeHHHhccccceeeecccccccCCccc-ccCccceeEEeccCCcccccceeccccccccCC-cCcceeE
Confidence            00000000 00000112333333333322211111111 235678899999999999999999999987543 7899999


Q ss_pred             EEEEeeccccccccccceEEE--EEecchhhccCceEEEEccCCe-EEEEeC-CCCCCCCEEEEcCCCCCC
Q 011450          272 VALHVDEKQGIHRDGLNLFSK--ISVDYTEAILGTSMEVETVEGM-KDLRIP-SGVQPGDTVKLQQMGVPD  338 (485)
Q Consensus       272 v~I~v~~h~~F~R~G~DL~~~--~~Isl~eAllG~~i~V~tldG~-~~l~Ip-~g~q~G~~irl~g~G~P~  338 (485)
                      +.+..++|+.|.|.+.||...  ..|++.+|++|....++++++. ..+.+. .-+.++...+++++|+|.
T Consensus       235 f~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (306)
T KOG0714|consen  235 FVVDEKPHPLFSRDGNDLSYSSGYEISLKEALLGVTVFVPTLDGRSYSLSINKDLIEPGEEDVIPGEGLPC  305 (306)
T ss_pred             EEEecCCcccccCCCccceecccceeehhhhhcCcceeeecccCccccCcccccccCCCceeeecCCCCCC
Confidence            999999999999999999999  9999999999999999999886 334444 457899999999999985

>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress

Probab=99.82  E-value=2.6e-20  Score=153.63  Aligned_cols=80  Identities=30%  Similarity=0.656  Sum_probs=70.5

Q ss_pred             ceEEEEEecchhhccCceEEEEccCC-eEEEEeCCCCCCCCEEEEcCCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHH
Q 011450          288 NLFSKISVDYTEAILGTSMEVETVEG-MKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERA  366 (485)
Q Consensus       288 DL~~~~~Isl~eAllG~~i~V~tldG-~~~l~Ip~g~q~G~~irl~g~G~P~~~~~~~rGDL~V~~~V~~P~~ls~~q~~  366 (485)
                      ||+++++||++||++|+++.|+|++| .++|+||+++++|++++|+|+|||...+++.+|||||+|+|.+|++||++|++
T Consensus         1 DL~~~~~I~l~~al~G~~i~i~~l~g~~~~i~ip~~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~ls~~qk~   80 (81)
T PF01556_consen    1 DLYCTIPISLKEALLGGTISIPTLDGKTIKIKIPPGTQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKKLSPEQKE   80 (81)
T ss_dssp             EEEEEEEEEHHHHHH-EEEEEE-TTS-EEEEEETST-STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SSTSHHHHH
T ss_pred             CeEEEEEeCHHHHhCCCEEEEECCCCCEEEEeccCccCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHhc
Confidence            89999999999999999999999999 68999999999999999999999998876689999999999999999999987


Q ss_pred             H
Q 011450          367 L  367 (485)
Q Consensus       367 l  367 (485)
                      |
T Consensus        81 l   81 (81)
T PF01556_consen   81 L   81 (81)
T ss_dssp             H
T ss_pred             C
Confidence            6

The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=99.78  E-value=2.1e-19  Score=199.28  Aligned_cols=76  Identities=38%  Similarity=0.635  Sum_probs=71.1

Q ss_pred             ccccCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhhhccccccchhccccccCcC
Q 011450           39 IRAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGIT  114 (485)
Q Consensus        39 ~~~~~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~  114 (485)
                      .+..+++||++|||+++||..|||+|||+||++||||+|+++.|.++|++|++||+|||||.+|+.||+||.+++.
T Consensus       568 ~~~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~  643 (1136)
T PTZ00341        568 IEIPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIK  643 (1136)
T ss_pred             ccCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhccccccC
Confidence            3346799999999999999999999999999999999998778899999999999999999999999999998765

>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.77  E-value=1.4e-19  Score=176.47  Aligned_cols=72  Identities=54%  Similarity=0.885  Sum_probs=69.0

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCC-ccHHHHHHHHHHHHhhhccccccchhccccccCcC
Q 011450           43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS-PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGIT  114 (485)
Q Consensus        43 ~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~-~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~  114 (485)
                      ..|+|+|||++++|+.++||||||+||++||||++++ |++.++|++||+||+||+||.||..||+||+.++.
T Consensus        30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~  102 (279)
T KOG0716|consen   30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLK  102 (279)
T ss_pred             hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHH
Confidence            6899999999999999999999999999999999986 88999999999999999999999999999988764

>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=4.5e-19  Score=177.93  Aligned_cols=90  Identities=46%  Similarity=0.744  Sum_probs=79.8

Q ss_pred             cCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCC-CccHHHHHHHHHHHHhhhccccccchhccccccCcCcccCCC
Q 011450           42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGL  120 (485)
Q Consensus        42 ~~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~-~~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~~~~~~~  120 (485)
                      ...|||++|||+.+||..||++|||+.|++||||+|| +|.|.++|+++.+||+||+|+.+|+.||++|..+....    
T Consensus         3 ~~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~----   78 (296)
T KOG0691|consen    3 KDTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQ----   78 (296)
T ss_pred             ccchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccch----
Confidence            3789999999999999999999999999999999999 58899999999999999999999999999998765432    


Q ss_pred             CCCCCCCCchhhhhhhcCC
Q 011450          121 SNTSQGVDPFELYSAFFGG  139 (485)
Q Consensus       121 ~~~~~~~dp~d~f~~fFgg  139 (485)
                          .-.++.+.|...|++
T Consensus        79 ----~~~d~~~~~r~~f~~   93 (296)
T KOG0691|consen   79 ----GREDQADGFRKKFGS   93 (296)
T ss_pred             ----hhhhHHHHHHHHhhh
Confidence                124778888888854

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=1.2e-18  Score=179.85  Aligned_cols=72  Identities=50%  Similarity=0.899  Sum_probs=68.2

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCc----cHHHHHHHHHHHHhhhccccccchhccccccCcC
Q 011450           43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSP----GAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGIT  114 (485)
Q Consensus        43 ~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~~----~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~  114 (485)
                      +.|||.+|||+++||.+|||+|||++++-||||+..++    .|+++|+.|.+||||||||.+|++||.||+.|++
T Consensus         8 e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~   83 (546)
T KOG0718|consen    8 EIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK   83 (546)
T ss_pred             hhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence            46999999999999999999999999999999998753    5899999999999999999999999999999998

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=3.2e-17  Score=155.20  Aligned_cols=70  Identities=59%  Similarity=0.882  Sum_probs=64.9

Q ss_pred             cccCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc--HHHHHHHHHHHHhhhccccccchhcccc
Q 011450           40 RAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPG--AEEKFKEISSAYEVLSDDEKRSVYDRFG  109 (485)
Q Consensus        40 ~~~~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~~~--a~e~F~~I~~AYevLsDp~kR~~YD~~G  109 (485)
                      +....|||+||||+++|+.+||++|||++|++||||+|+...  ++++|++|++||++|+|+.+|+.||+++
T Consensus         2 ~~~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~   73 (237)
T COG2214           2 MSDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG   73 (237)
T ss_pred             chhhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence            345689999999999999999999999999999999998543  8999999999999999999999999984

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=99.69  E-value=1.5e-17  Score=130.42  Aligned_cols=62  Identities=48%  Similarity=0.817  Sum_probs=59.2

Q ss_pred             CcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc--HHHHHHHHHHHHhhhccccccchhc
Q 011450           45 DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPG--AEEKFKEISSAYEVLSDDEKRSVYD  106 (485)
Q Consensus        45 d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~~~--a~e~F~~I~~AYevLsDp~kR~~YD  106 (485)
                      |||+||||+++|+.+|||+||+++++++|||++....  +++.|+.|++||++|+||.+|+.||
T Consensus         1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD   64 (64)
T PF00226_consen    1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD   64 (64)
T ss_dssp             HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence            6899999999999999999999999999999987655  8899999999999999999999998

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.69  E-value=1.3e-17  Score=172.27  Aligned_cols=75  Identities=44%  Similarity=0.677  Sum_probs=69.0

Q ss_pred             cCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCC--ccHHHHHHHHHHHHhhhccccccchhccccccCcCcc
Q 011450           42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS--PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGE  116 (485)
Q Consensus        42 ~~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~--~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~~~  116 (485)
                      +.+.||+||||.++|+..|||++||+||++||||+||+  .+|+++|+.|+.||+|||||..|+-||.+-+.-|.+.
T Consensus         6 ~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~~~   82 (508)
T KOG0717|consen    6 KKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILRGK   82 (508)
T ss_pred             hhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhcCC
Confidence            45899999999999999999999999999999999986  5789999999999999999999999999888666544

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.68  E-value=4.6e-17  Score=163.52  Aligned_cols=77  Identities=48%  Similarity=0.724  Sum_probs=69.3

Q ss_pred             cccCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCC----ccHHHHHHHHHHHHhhhccccccchhccccccCcCc
Q 011450           40 RAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS----PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITG  115 (485)
Q Consensus        40 ~~~~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~----~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~~  115 (485)
                      .+..+|||+||||.++|+..||.||||+||.|||||...+    +.|+++|-.|..|-|||+||+||++||+ |++.+..
T Consensus       390 qs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDn-GeDPLD~  468 (504)
T KOG0624|consen  390 QSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDN-GEDPLDP  468 (504)
T ss_pred             HhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccC-CCCCCCh
Confidence            4567999999999999999999999999999999998765    3589999999999999999999999998 7777765


Q ss_pred             cc
Q 011450          116 EY  117 (485)
Q Consensus       116 ~~  117 (485)
                      ..
T Consensus       469 Es  470 (504)
T KOG0624|consen  469 ES  470 (504)
T ss_pred             hh
Confidence            43

>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.66  E-value=4.9e-17  Score=155.28  Aligned_cols=70  Identities=46%  Similarity=0.750  Sum_probs=65.0

Q ss_pred             cCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCC---ccHHHHHHHHHHHHhhhccccccchhcccccc
Q 011450           42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS---PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEA  111 (485)
Q Consensus        42 ~~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~---~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~  111 (485)
                      ..+|+|+||||.++|+..||++|||+||++||||+++.   .+|.++|+.++.||.||+|.++|+.||+.|.-
T Consensus        12 ~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~i   84 (264)
T KOG0719|consen   12 NKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSI   84 (264)
T ss_pred             cccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCC
Confidence            34699999999999999999999999999999999963   57899999999999999999999999998864

>PHA03102 Small T antigen; Reviewed

Probab=99.65  E-value=1.6e-16  Score=145.53  Aligned_cols=85  Identities=24%  Similarity=0.323  Sum_probs=72.6

Q ss_pred             CCCcchhccCCCCC--CHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhhhccccccchhccccccCcCcccCCC
Q 011450           43 GTDYYSTLNVRQNA--TLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGL  120 (485)
Q Consensus        43 ~~d~Y~iLgv~~~A--s~~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~~~~~~~  120 (485)
                      ...+|++|||+++|  |.+|||+|||++|+++|||+++   ..++|++|++||++|+|+.+|..||.+|+......    
T Consensus         4 ~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg---~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~~~----   76 (153)
T PHA03102          4 SKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGG---DEEKMKELNTLYKKFRESVKSLRDLDGEEDSSSEE----   76 (153)
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCc---hhHHHHHHHHHHHHHhhHHHhccccccCCcccccc----
Confidence            35789999999999  9999999999999999999984   45799999999999999999999999998754321    


Q ss_pred             CCCCCCCCchhhhhhhcCC
Q 011450          121 SNTSQGVDPFELYSAFFGG  139 (485)
Q Consensus       121 ~~~~~~~dp~d~f~~fFgg  139 (485)
                           ...|.++|.+.||+
T Consensus        77 -----~~~~~~~f~~~fg~   90 (153)
T PHA03102         77 -----EDVPSGYVGATFGD   90 (153)
T ss_pred             -----cccHHHHhhhhcCC
Confidence                 12378888888854

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=99.60  E-value=1e-15  Score=118.25  Aligned_cols=58  Identities=67%  Similarity=0.969  Sum_probs=54.3

Q ss_pred             CCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCC--CccHHHHHHHHHHHHhhhccccc
Q 011450           44 TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK--SPGAEEKFKEISSAYEVLSDDEK  101 (485)
Q Consensus        44 ~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~--~~~a~e~F~~I~~AYevLsDp~k  101 (485)
                      +|||++|||+++++.++||+||++|++++|||++.  .+.+.+.|++|++||++|+||.+
T Consensus         1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~   60 (60)
T smart00271        1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK   60 (60)
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence            48999999999999999999999999999999998  56788999999999999999853

>cd06257 DnaJ DnaJ domain or J-domain

Probab=99.57  E-value=3.5e-15  Score=113.07  Aligned_cols=54  Identities=67%  Similarity=0.987  Sum_probs=51.5

Q ss_pred             CcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCC-ccHHHHHHHHHHHHhhhcc
Q 011450           45 DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS-PGAEEKFKEISSAYEVLSD   98 (485)
Q Consensus        45 d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~-~~a~e~F~~I~~AYevLsD   98 (485)
                      |||++|||+++++.++||++||+|+++||||++.. +.+.+.|++|++||++|+|
T Consensus         1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257           1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence            79999999999999999999999999999999976 6789999999999999986

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.56  E-value=3e-15  Score=141.98  Aligned_cols=71  Identities=37%  Similarity=0.677  Sum_probs=66.0

Q ss_pred             cCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCC-ccHHHHHHHHHHHHhhhccccccchhccccccC
Q 011450           42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS-PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAG  112 (485)
Q Consensus        42 ~~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~-~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~  112 (485)
                      ...|+|+||||+++||.+|||+|||+|.+|||||++++ .+.++.|.+|++||+.|+|+..|+.|..||+..
T Consensus        97 ~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PD  168 (230)
T KOG0721|consen   97 QKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPD  168 (230)
T ss_pred             hcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCC
Confidence            46799999999999999999999999999999999987 567778889999999999999999999999753

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.52  E-value=9e-15  Score=150.05  Aligned_cols=92  Identities=41%  Similarity=0.694  Sum_probs=77.2

Q ss_pred             ccccCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCC--ccHHHHHHHHHHHHhhhccccccchhccccccCcCcc
Q 011450           39 IRAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS--PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGE  116 (485)
Q Consensus        39 ~~~~~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~--~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~~~  116 (485)
                      -++..+|||.|||+.++|+..|||+|||++|+.||||+|..  .+++.+|++|-+||.+|+||.+|..||. |.+ +...
T Consensus       368 kkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~ds-g~d-le~~  445 (486)
T KOG0550|consen  368 KKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDS-GQD-LEEV  445 (486)
T ss_pred             HHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhccc-ccc-hhhh
Confidence            45678999999999999999999999999999999999963  5789999999999999999999999997 222 1111


Q ss_pred             cCCCCCCCCCCCchhhhhhh
Q 011450          117 YDGLSNTSQGVDPFELYSAF  136 (485)
Q Consensus       117 ~~~~~~~~~~~dp~d~f~~f  136 (485)
                          +.++.++||+++|..|
T Consensus       446 ----~~~~a~~dp~~~~~a~  461 (486)
T KOG0550|consen  446 ----GSGGAGFDPFNIFRAF  461 (486)
T ss_pred             ----cCCCcCcChhhhhhhc
Confidence                1122578999999887

>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.41  E-value=6.9e-14  Score=135.17  Aligned_cols=68  Identities=40%  Similarity=0.710  Sum_probs=64.4

Q ss_pred             ccCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhhhccccccchhccc
Q 011450           41 AAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRF  108 (485)
Q Consensus        41 ~~~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYevLsDp~kR~~YD~~  108 (485)
                      ....|.|++|||.++|+..||++|||+||++||||+++++++.+.|+.|..|||+|.|.+.|..||-+
T Consensus        30 CG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydya   97 (329)
T KOG0722|consen   30 CGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYA   97 (329)
T ss_pred             ccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHH
Confidence            45679999999999999999999999999999999999999999999999999999999999999953

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=99.39  E-value=3.7e-13  Score=126.23  Aligned_cols=64  Identities=27%  Similarity=0.444  Sum_probs=57.2

Q ss_pred             CCcchhccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc------cHHHHHHHHHHHHhhhccccccchhcc
Q 011450           44 TDYYSTLNVRQN--ATLQEIKTSYRKLARKYHPDINKSP------GAEEKFKEISSAYEVLSDDEKRSVYDR  107 (485)
Q Consensus        44 ~d~Y~iLgv~~~--As~~eIk~AYr~la~k~HPD~n~~~------~a~e~F~~I~~AYevLsDp~kR~~YD~  107 (485)
                      .|||++|||++.  ++..+|+++||+|++++|||+....      .+.++|+.|++||++|+||.+|+.|+-
T Consensus         1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll   72 (171)
T PRK05014          1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLL   72 (171)
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHH
Confidence            489999999996  7889999999999999999997532      256789999999999999999999984

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=99.37  E-value=4.6e-13  Score=124.93  Aligned_cols=64  Identities=30%  Similarity=0.450  Sum_probs=56.6

Q ss_pred             CCcchhccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc----HHHHHHHHHHHHhhhccccccchhcc
Q 011450           44 TDYYSTLNVRQN--ATLQEIKTSYRKLARKYHPDINKSPG----AEEKFKEISSAYEVLSDDEKRSVYDR  107 (485)
Q Consensus        44 ~d~Y~iLgv~~~--As~~eIk~AYr~la~k~HPD~n~~~~----a~e~F~~I~~AYevLsDp~kR~~YD~  107 (485)
                      .|||++|||++.  ++..+|+++||+|++++|||++.+..    +.+.+..|++||++|+||.+|+.|+.
T Consensus         2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL   71 (166)
T PRK01356          2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYML   71 (166)
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            589999999997  78999999999999999999986422    33457899999999999999999985

>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.34  E-value=5.6e-13  Score=138.27  Aligned_cols=65  Identities=42%  Similarity=0.600  Sum_probs=63.7

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhhhccccccchhcc
Q 011450           43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDR  107 (485)
Q Consensus        43 ~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYevLsDp~kR~~YD~  107 (485)
                      .+|.|.+|||++++|.++|||.||++|+-.|||+|..+.|+|.|+.++.|||+|+|+++|..||.
T Consensus       234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~  298 (490)
T KOG0720|consen  234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDL  298 (490)
T ss_pred             CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999997

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=99.34  E-value=1.3e-12  Score=122.52  Aligned_cols=66  Identities=26%  Similarity=0.411  Sum_probs=59.2

Q ss_pred             cCCCcchhccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc------cHHHHHHHHHHHHhhhccccccchhcc
Q 011450           42 AGTDYYSTLNVRQN--ATLQEIKTSYRKLARKYHPDINKSP------GAEEKFKEISSAYEVLSDDEKRSVYDR  107 (485)
Q Consensus        42 ~~~d~Y~iLgv~~~--As~~eIk~AYr~la~k~HPD~n~~~------~a~e~F~~I~~AYevLsDp~kR~~YD~  107 (485)
                      +..|||++|||++.  .+..+|+++||+|+++||||++...      .+.++|..||+||++|+||.+|+.|+.
T Consensus         2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL   75 (173)
T PRK00294          2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLL   75 (173)
T ss_pred             CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence            56899999999999  6789999999999999999998642      256789999999999999999999994

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=99.30  E-value=3e-12  Score=120.55  Aligned_cols=65  Identities=23%  Similarity=0.310  Sum_probs=56.8

Q ss_pred             CCCcchhccCCCC--CCHHHHHHHHHHHHHHhCCCCCCC-cc-----HHHHHHHHHHHHhhhccccccchhcc
Q 011450           43 GTDYYSTLNVRQN--ATLQEIKTSYRKLARKYHPDINKS-PG-----AEEKFKEISSAYEVLSDDEKRSVYDR  107 (485)
Q Consensus        43 ~~d~Y~iLgv~~~--As~~eIk~AYr~la~k~HPD~n~~-~~-----a~e~F~~I~~AYevLsDp~kR~~YD~  107 (485)
                      ..|||++|||++.  ++..+|+++||+|++++|||++.. +.     +.+.++.||+||++|+||.+|+.|+.
T Consensus         5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll   77 (176)
T PRK03578          5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLL   77 (176)
T ss_pred             CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHH
Confidence            4799999999996  689999999999999999999863 22     33446899999999999999999994

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=99.27  E-value=8.3e-12  Score=99.12  Aligned_cols=63  Identities=48%  Similarity=0.988  Sum_probs=53.0

Q ss_pred             ccCCCCCCCCCCcccCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEE-eecccccCCCc
Q 011450          168 RCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKII-IDHCRRCGGNG  230 (485)
Q Consensus       168 ~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i-~~~C~~C~G~G  230 (485)
                      .|+|+|++++..+.+|+.|+|+|.++..++.+++.+++.++|+.|+|+|++| .++|+.|+|+|
T Consensus         3 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C~G~g   66 (66)
T PF00684_consen    3 KCNGTGAKPGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTCKGSG   66 (66)
T ss_dssp             CCTTTSB-STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSSTTSS
T ss_pred             cCCCcccCCCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCCCCcC
Confidence            3999999999999999999999999998888888888899999999999999 88999999976

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.24  E-value=9.8e-12  Score=128.23  Aligned_cols=117  Identities=26%  Similarity=0.480  Sum_probs=84.8

Q ss_pred             CcccCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEee----------cccccCCCceeeeceEEEEEcCCCCCC
Q 011450          179 CIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID----------HCRRCGGNGEVQSKRSMKVVIPPGVSN  248 (485)
Q Consensus       179 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~----------~C~~C~G~G~v~~~k~l~V~IP~Gv~d  248 (485)
                      ...+|++|+|+|..-.+         ...+|++|+|+|.+...          .|++|+|+|.+.       .=|-....
T Consensus       141 ~~~~C~~C~GsGak~gt---------~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i-------~~pC~~C~  204 (371)
T COG0484         141 RSVTCSTCHGSGAKPGT---------DPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKII-------KDPCGKCK  204 (371)
T ss_pred             eeeECCcCCCCCCCCCC---------CCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeEC-------CCCCCCCC
Confidence            45689999999976432         14689999999976443          399999999652       22444333


Q ss_pred             CCEEEEccccCCCCCCCCCccEEEEEEeeccccccccccceEEEEEecchhhccCceEEEEccCCeEEEEeCCCCCCCCE
Q 011450          249 GATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDT  328 (485)
Q Consensus       249 G~~Ir~~G~Gd~~~~g~~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~  328 (485)
                      |.-..-.                                                        .-.++|+||+|+..|++
T Consensus       205 G~G~v~~--------------------------------------------------------~~~i~V~IPaGv~~g~~  228 (371)
T COG0484         205 GKGRVKK--------------------------------------------------------KKSISVNIPAGVDDGDR  228 (371)
T ss_pred             CCCeEee--------------------------------------------------------eeEEEEECCCCCccCCE
Confidence            3211100                                                        01378999999999999


Q ss_pred             EEEcCCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHHHH
Q 011450          329 VKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALV  368 (485)
Q Consensus       329 irl~g~G~P~~~~~~~rGDL~V~~~V~~P~~ls~~q~~ll  368 (485)
                      |++.|+|-...++ +..|||||+|.|.-.+.|..+..+|+
T Consensus       229 ir~~g~G~~g~~G-gp~GDLyv~i~v~~h~~F~R~g~dL~  267 (371)
T COG0484         229 IRLSGEGEAGPNG-GPAGDLYVFVHVKPHPIFERDGDDLY  267 (371)
T ss_pred             EEEecCcccCCCC-CCCccEEEEEEeecCCCeEECCCceE
Confidence            9999999988654 56899999999999887766655543

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=99.23  E-value=8.5e-12  Score=109.10  Aligned_cols=52  Identities=23%  Similarity=0.410  Sum_probs=47.8

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhhhc
Q 011450           43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLS   97 (485)
Q Consensus        43 ~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYevLs   97 (485)
                      ..++|++|||+++||.+|||+|||+|++++|||++   ++.+.|++|++||++|.
T Consensus        64 ~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkg---Gs~~~~~kIneAyevL~  115 (116)
T PTZ00100         64 KSEAYKILNISPTASKERIREAHKQLMLRNHPDNG---GSTYIASKVNEAKDLLL  115 (116)
T ss_pred             HHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC---CCHHHHHHHHHHHHHHh
Confidence            36999999999999999999999999999999986   45678999999999984

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.23  E-value=2.7e-11  Score=127.37  Aligned_cols=54  Identities=22%  Similarity=0.382  Sum_probs=47.6

Q ss_pred             EEEEeCCCCCCCCEEEEcCCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHHHHH
Q 011450          315 KDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVE  369 (485)
Q Consensus       315 ~~l~Ip~g~q~G~~irl~g~G~P~~~~~~~rGDL~V~~~V~~P~~ls~~q~~ll~  369 (485)
                      ++|.||+|+++|++++|+|+|+|...+ ..+|||||+|+|..|+.+..++.+|+.
T Consensus       229 ~~V~Ip~G~~~G~~i~l~g~G~~~~~~-~~~GDL~v~v~v~~~~~f~r~g~DL~~  282 (386)
T PRK14289        229 ITVKIPAGVAEGMQLSMNGKGNAGKHG-GVNGDLLVVIEEEPHPELIRDENDLIY  282 (386)
T ss_pred             EEEEeCCCCCCCCEEEEeccccCCCCC-CCCccEEEEEEEecCCcccccccceeE
Confidence            689999999999999999999986543 468999999999999999988877754

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.22  E-value=2.7e-11  Score=126.86  Aligned_cols=56  Identities=20%  Similarity=0.338  Sum_probs=48.5

Q ss_pred             EEEEeCCCCCCCCEEEEcCCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHHHHHHH
Q 011450          315 KDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEI  371 (485)
Q Consensus       315 ~~l~Ip~g~q~G~~irl~g~G~P~~~~~~~rGDL~V~~~V~~P~~ls~~q~~ll~~l  371 (485)
                      ++|.||+|+++|++++|+|+|+|...+ ..+|||||+|+|..|+.++.++.+|+..+
T Consensus       218 ~~V~IppG~~~G~~i~l~g~G~~~~~~-~~~GDL~v~v~v~~~~~f~r~g~DL~~~~  273 (374)
T PRK14293        218 LKINIPAGVDTGTRLRVSGEGDAGLRG-GPPGDLYVYLFVKNDPEFRRDGINILSEI  273 (374)
T ss_pred             EEEEeCCCCCCCCEEEEccCccCCCCC-CCCcCEEEEEEEeCCCccChhhhceEEEe
Confidence            689999999999999999999986543 45799999999999999999988775443

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=99.18  E-value=1.6e-11  Score=122.94  Aligned_cols=57  Identities=40%  Similarity=0.531  Sum_probs=51.5

Q ss_pred             cCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCC--------ccHHHHHHHHHHHHhhhcc
Q 011450           42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS--------PGAEEKFKEISSAYEVLSD   98 (485)
Q Consensus        42 ~~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~--------~~a~e~F~~I~~AYevLsD   98 (485)
                      ...|+|++|||+++||.+|||+|||+|+++||||++..        +.++++|++|++||++|+.
T Consensus       198 ~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~  262 (267)
T PRK09430        198 TLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK  262 (267)
T ss_pred             cHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence            44799999999999999999999999999999999742        3478999999999999975

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.18  E-value=4.7e-11  Score=124.65  Aligned_cols=119  Identities=23%  Similarity=0.461  Sum_probs=85.2

Q ss_pred             CCcccCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEE--------eecccccCCCceeeeceEEEEEcCCCCCCC
Q 011450          178 NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKII--------IDHCRRCGGNGEVQSKRSMKVVIPPGVSNG  249 (485)
Q Consensus       178 ~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i--------~~~C~~C~G~G~v~~~k~l~V~IP~Gv~dG  249 (485)
                      .....|+.|+|+|.....         ...+|+.|+|+|.+.        ...|..|.|.|.+.       .-|-....|
T Consensus       144 ~r~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~-------~~~C~~C~G  207 (365)
T PRK14285        144 TRNMLCESCLGKKSEKGT---------SPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKII-------SNPCKSCKG  207 (365)
T ss_pred             eecccCCCCCCcccCCCC---------CCccCCCccCceeEEecCceeEEeeecCCCCCccccc-------CCCCCCCCC
Confidence            345689999999974321         125799999999764        33599999999652       122222222


Q ss_pred             CEEEEccccCCCCCCCCCccEEEEEEeeccccccccccceEEEEEecchhhccCceEEEEccCCeEEEEeCCCCCCCCEE
Q 011450          250 ATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTV  329 (485)
Q Consensus       250 ~~Ir~~G~Gd~~~~g~~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~i  329 (485)
                      ..++-.                                                        .-.++|+||+|+++|+++
T Consensus       208 ~g~v~~--------------------------------------------------------~~~~~V~Ip~G~~~G~~i  231 (365)
T PRK14285        208 KGSLKK--------------------------------------------------------KETIELKIPAGIDDNQQI  231 (365)
T ss_pred             CCEEec--------------------------------------------------------cEEEEEEECCCCCCCCEE
Confidence            221100                                                        013689999999999999


Q ss_pred             EEcCCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHHHHH
Q 011450          330 KLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVE  369 (485)
Q Consensus       330 rl~g~G~P~~~~~~~rGDL~V~~~V~~P~~ls~~q~~ll~  369 (485)
                      +++|+|.+..++ +.+|||||+|+|..|+.++.+..+|+.
T Consensus       232 ~~~g~G~~~~~~-~~~GDL~v~i~v~~h~~f~R~G~dL~~  270 (365)
T PRK14285        232 KMRGKGSVNPDN-QQYGDLYIKILIKPHKIFKRNGKDLYA  270 (365)
T ss_pred             EEeeccccCCCC-CCCCCEEEEEEEecCCCeEEeccceEE
Confidence            999999987653 457999999999999999888766643

>PHA02624 large T antigen; Provisional

Probab=99.18  E-value=1.5e-11  Score=133.38  Aligned_cols=62  Identities=27%  Similarity=0.492  Sum_probs=57.5

Q ss_pred             cCCCcchhccCCCCC--CHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhhhccccccchhc
Q 011450           42 AGTDYYSTLNVRQNA--TLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYD  106 (485)
Q Consensus        42 ~~~d~Y~iLgv~~~A--s~~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYevLsDp~kR~~YD  106 (485)
                      ...++|++|||+++|  +.+|||+|||+||++||||++   +++++|++|++||++|+|+.+|..|+
T Consensus         9 e~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKg---Gdeekfk~Ln~AYevL~d~~k~~r~~   72 (647)
T PHA02624          9 ESKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKG---GDEEKMKRLNSLYKKLQEGVKSARQS   72 (647)
T ss_pred             HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC---CcHHHHHHHHHHHHHHhcHHHhhhcc
Confidence            356999999999999  999999999999999999997   45789999999999999999999993

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.16  E-value=5.3e-11  Score=124.53  Aligned_cols=66  Identities=18%  Similarity=0.334  Sum_probs=51.4

Q ss_pred             hccCceEEEEccCCeEEEEeCCCCCCCCEEEEcCCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHHH
Q 011450          300 AILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERAL  367 (485)
Q Consensus       300 AllG~~i~V~tldG~~~l~Ip~g~q~G~~irl~g~G~P~~~~~~~rGDL~V~~~V~~P~~ls~~q~~l  367 (485)
                      +.|++...|.. .-.++|.||+|+++|++++++|+|+|...+ +.+|||||+|+|..++.+..+..+|
T Consensus       199 ~~C~G~g~v~~-~~~l~V~Ip~G~~~G~~i~~~G~G~~~~~~-~~~GDL~v~i~v~~h~~F~R~G~DL  264 (371)
T PRK14287        199 ATCGGKGKVRK-RKKINVKVPAGIDHGQQLRVSGQGEAGVNG-GPPGDLYVVFNVKPHEFFERDGDDI  264 (371)
T ss_pred             CCCCCeeEEee-eEEEEEEECCcCCCCCEEEEccCCcCCCCC-CCCccEEEEEEEecCCCEEEecCCe
Confidence            44555555542 123789999999999999999999997644 4689999999999988887666444

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.14  E-value=9.4e-11  Score=123.50  Aligned_cols=52  Identities=27%  Similarity=0.430  Sum_probs=44.6

Q ss_pred             EEEEeCCCCCCCCEEEEcCCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHHH
Q 011450          315 KDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERAL  367 (485)
Q Consensus       315 ~~l~Ip~g~q~G~~irl~g~G~P~~~~~~~rGDL~V~~~V~~P~~ls~~q~~l  367 (485)
                      ++|.||+|+++|++|+++|+|.+..++ ..+|||||+|+|.-++.+..+..+|
T Consensus       244 ~~V~Ip~G~~~G~~i~~~g~G~~~~~~-~~~GDL~i~i~v~~h~~F~R~G~DL  295 (392)
T PRK14279        244 INVRIPPGVEDGQRIRLAGQGEAGLRG-APSGDLYVTVHVRPDKVFGRDGDDL  295 (392)
T ss_pred             eEEEeCCCCCCCcEEEEeCCccCCCCC-CCCCCEEEEEEEecCCcceeecCcE
Confidence            689999999999999999999987644 4579999999999988887766544

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.14  E-value=9.4e-11  Score=122.77  Aligned_cols=117  Identities=27%  Similarity=0.523  Sum_probs=83.0

Q ss_pred             CCcccCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEe--------ecccccCCCceeeeceEEEEEcCCCCCCC
Q 011450          178 NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIII--------DHCRRCGGNGEVQSKRSMKVVIPPGVSNG  249 (485)
Q Consensus       178 ~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~--------~~C~~C~G~G~v~~~k~l~V~IP~Gv~dG  249 (485)
                      .....|+.|+|+|.....         ...+|+.|+|+|.+..        ..|..|.|.|.+..       -+--..+|
T Consensus       142 ~r~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~-------~~C~~C~G  205 (373)
T PRK14301        142 PKNVTCDDCGGSGAAPGT---------SPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVIT-------HPCPKCKG  205 (373)
T ss_pred             eecccCCCCCCcccCCCC---------CCcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeecC-------CCCCCCCC
Confidence            345689999999975321         1257999999997653        35999999996421       11222222


Q ss_pred             CEEEEccccCCCCCCCCCccEEEEEEeeccccccccccceEEEEEecchhhccCceEEEEccCCeEEEEeCCCCCCCCEE
Q 011450          250 ATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTV  329 (485)
Q Consensus       250 ~~Ir~~G~Gd~~~~g~~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~i  329 (485)
                      ..++                                                       .. .-.++|.||+|+++|+++
T Consensus       206 ~g~v-------------------------------------------------------~~-~~~l~V~Ip~G~~~G~~i  229 (373)
T PRK14301        206 SGIV-------------------------------------------------------QQ-TRELKVRIPAGVDTGSRL  229 (373)
T ss_pred             Ccee-------------------------------------------------------cc-ceEEEEEeCCCCcCCCEE
Confidence            1111                                                       00 013689999999999999


Q ss_pred             EEcCCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHHH
Q 011450          330 KLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERAL  367 (485)
Q Consensus       330 rl~g~G~P~~~~~~~rGDL~V~~~V~~P~~ls~~q~~l  367 (485)
                      +++|+|+|...+ +.+|||||+|+|..|+.+..+..+|
T Consensus       230 ~~~g~G~~~~~~-~~~GDLiv~i~v~~h~~f~r~G~DL  266 (373)
T PRK14301        230 RLRGEGEPGVHG-GPPGDLYVVITVEDDKIFQRQGQDL  266 (373)
T ss_pred             EEeccccCCCCC-CCCcCEEEEEEEEECCCceeecCcE
Confidence            999999987543 4689999999999999988766554

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.12  E-value=1.3e-10  Score=122.12  Aligned_cols=117  Identities=27%  Similarity=0.502  Sum_probs=83.0

Q ss_pred             CCcccCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEe------------ecccccCCCceeeeceEEEEEcCCC
Q 011450          178 NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIII------------DHCRRCGGNGEVQSKRSMKVVIPPG  245 (485)
Q Consensus       178 ~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~------------~~C~~C~G~G~v~~~k~l~V~IP~G  245 (485)
                      .....|+.|+|+|.....         ...+|+.|+|+|.+..            ..|..|.|.|.+.       .-+..
T Consensus       144 ~~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------~~~C~  207 (380)
T PRK14276        144 NREATCHTCNGSGAKPGT---------SPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEI-------KEPCQ  207 (380)
T ss_pred             eccccCCCCcCcccCCCC---------CCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccc-------cCCCC
Confidence            345689999999974321         1357999999997643            2499999999652       22222


Q ss_pred             CCCCCEEEEccccCCCCCCCCCccEEEEEEeeccccccccccceEEEEEecchhhccCceEEEEccCCeEEEEeCCCCCC
Q 011450          246 VSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQP  325 (485)
Q Consensus       246 v~dG~~Ir~~G~Gd~~~~g~~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~  325 (485)
                      ...|..++-                                                       . .-.++|.||+|+++
T Consensus       208 ~C~G~g~~~-------------------------------------------------------~-~~~l~V~Ip~G~~~  231 (380)
T PRK14276        208 TCHGTGHEK-------------------------------------------------------Q-AHTVSVKIPAGVET  231 (380)
T ss_pred             CCCCceEEE-------------------------------------------------------E-EEEEEEEeCCCccC
Confidence            223322210                                                       0 01368999999999


Q ss_pred             CCEEEEcCCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHHH
Q 011450          326 GDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERAL  367 (485)
Q Consensus       326 G~~irl~g~G~P~~~~~~~rGDL~V~~~V~~P~~ls~~q~~l  367 (485)
                      |++++++|+|+|..++ ..+|||||+|+|..++.+..+..+|
T Consensus       232 G~~i~l~G~G~~~~~~-~~~GDL~v~i~v~~h~~F~R~G~DL  272 (380)
T PRK14276        232 GQQIRLQGQGEAGFNG-GPYGDLYVVFRVEPSKKFERDGSTI  272 (380)
T ss_pred             CcEEEEeccccCCCCC-CCCcCEEEEEEEEECcceeeecceE
Confidence            9999999999997654 4689999999999998888665544

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.09  E-value=4.3e-10  Score=117.76  Aligned_cols=48  Identities=29%  Similarity=0.486  Sum_probs=42.0

Q ss_pred             EEEEeCCCCCCCCEEEEcCCCCCCCCCCCCCccEEEEEEEEcCCCCChh
Q 011450          315 KDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDP  363 (485)
Q Consensus       315 ~~l~Ip~g~q~G~~irl~g~G~P~~~~~~~rGDL~V~~~V~~P~~ls~~  363 (485)
                      ++|.||+|+++|++|+++|+|.+...+ +.+|||||+|+|..++.+..+
T Consensus       224 ~~V~Ip~G~~~G~~i~~~g~G~~~~~~-~~~GDL~v~v~v~~h~~F~R~  271 (372)
T PRK14296        224 IEVNIPKGIRPNQQIKLSQKGHASLNN-GVNGDLIIDIYLKESKVFEII  271 (372)
T ss_pred             EEEEECCCCCCCCEEEEeccccCCCCC-CCCccEEEEEEEeCCCCEEEe
Confidence            689999999999999999999987543 468999999999988888763

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.09  E-value=1.6e-10  Score=121.16  Aligned_cols=117  Identities=24%  Similarity=0.473  Sum_probs=81.3

Q ss_pred             CCcccCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEe------------ecccccCCCceeeeceEEEEEcCCC
Q 011450          178 NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIII------------DHCRRCGGNGEVQSKRSMKVVIPPG  245 (485)
Q Consensus       178 ~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~------------~~C~~C~G~G~v~~~k~l~V~IP~G  245 (485)
                      .....|+.|+|+|.....         ...+|+.|+|+|.++.            ..|..|.|.|.+..       -+-.
T Consensus       139 ~r~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~-------~~C~  202 (377)
T PRK14298        139 PRAERCSTCSGTGAKPGT---------SPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIE-------SPCP  202 (377)
T ss_pred             EeeccCCCCCCCcccCCC---------CCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccC-------CCCC
Confidence            345689999999975321         1357999999997653            24999999996421       1222


Q ss_pred             CCCCCEEEEccccCCCCCCCCCccEEEEEEeeccccccccccceEEEEEecchhhccCceEEEEccCCeEEEEeCCCCCC
Q 011450          246 VSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQP  325 (485)
Q Consensus       246 v~dG~~Ir~~G~Gd~~~~g~~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~  325 (485)
                      ...|..+                                                       |.. .-.++|.||||+++
T Consensus       203 ~C~G~g~-------------------------------------------------------v~~-~~~l~V~IppG~~~  226 (377)
T PRK14298        203 VCSGTGK-------------------------------------------------------VRK-TRKITVNVPAGADS  226 (377)
T ss_pred             CCCCccE-------------------------------------------------------EEE-EEEEEecCCCCCCC
Confidence            2222111                                                       110 01368999999999


Q ss_pred             CCEEEEcCCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHHH
Q 011450          326 GDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERAL  367 (485)
Q Consensus       326 G~~irl~g~G~P~~~~~~~rGDL~V~~~V~~P~~ls~~q~~l  367 (485)
                      |++++++|+|++...+ +.+|||||+|+|.-.+.+..+..+|
T Consensus       227 G~~i~~~g~G~~~~~~-~~~GDL~i~i~v~~h~~F~R~G~DL  267 (377)
T PRK14298        227 GLRLKLSGEGEAGSPG-APSGDLYIVLHVKEHDYFERVGDDI  267 (377)
T ss_pred             CCEEEEecccCCCCCC-CCCcCEEEEEEEecCCCeEEEcCcE
Confidence            9999999999986443 5689999999999888777655444

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.09  E-value=2.4e-10  Score=119.70  Aligned_cols=54  Identities=17%  Similarity=0.367  Sum_probs=46.8

Q ss_pred             EEEEeCCCCCCCCEEEEcCCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHHHHHHH
Q 011450          315 KDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEI  371 (485)
Q Consensus       315 ~~l~Ip~g~q~G~~irl~g~G~P~~~~~~~rGDL~V~~~V~~P~~ls~~q~~ll~~l  371 (485)
                      ++|.||+|+++|++++++|+|.+..++   .|||||+|+|..|+.++.+..+|+..+
T Consensus       215 ~~V~Ip~G~~~G~~i~~~G~G~~~~~~---~GDL~v~i~v~~h~~f~r~g~dL~~~~  268 (371)
T PRK14292        215 VKVKLPRGIDEGYRIRVAGMGNEGPGG---NGDLYVHIEMEPHPELRREQEHLIYEA  268 (371)
T ss_pred             EEEEECCCCCCCcEEEEecCcCCCCCC---CCCEEEEEEEecCCccccchhceeEEe
Confidence            689999999999999999999986433   399999999999999998887775443

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.08  E-value=2.3e-10  Score=120.02  Aligned_cols=117  Identities=24%  Similarity=0.507  Sum_probs=81.9

Q ss_pred             CCcccCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEe------------ecccccCCCceeeeceEEEEEcCCC
Q 011450          178 NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIII------------DHCRRCGGNGEVQSKRSMKVVIPPG  245 (485)
Q Consensus       178 ~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~------------~~C~~C~G~G~v~~~k~l~V~IP~G  245 (485)
                      .....|+.|+|+|.....         ...+|+.|+|+|.+..            ..|..|.|.|.+.       .-+.-
T Consensus       141 ~r~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------~~~C~  204 (376)
T PRK14280        141 PKEETCDTCHGSGAKPGT---------SKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEI-------KEKCP  204 (376)
T ss_pred             eeeccCCCCCCcccCCCC---------CCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCcee-------cCCCC
Confidence            345689999999964321         1357999999997642            3599999999642       22222


Q ss_pred             CCCCCEEEEccccCCCCCCCCCccEEEEEEeeccccccccccceEEEEEecchhhccCceEEEEccCCeEEEEeCCCCCC
Q 011450          246 VSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQP  325 (485)
Q Consensus       246 v~dG~~Ir~~G~Gd~~~~g~~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~  325 (485)
                      ...|..+.                                                       .. .-.++|.||+|+++
T Consensus       205 ~C~G~g~v-------------------------------------------------------~~-~~~i~V~Ip~G~~~  228 (376)
T PRK14280        205 TCHGKGKV-------------------------------------------------------RK-RKKINVKIPAGVDN  228 (376)
T ss_pred             CCCCceEE-------------------------------------------------------EE-EEEEEEEeCCCCcC
Confidence            22222111                                                       00 01368999999999


Q ss_pred             CCEEEEcCCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHHH
Q 011450          326 GDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERAL  367 (485)
Q Consensus       326 G~~irl~g~G~P~~~~~~~rGDL~V~~~V~~P~~ls~~q~~l  367 (485)
                      |++++++|+|+|...+ +.+|||||+|+|.-++.+..+..+|
T Consensus       229 G~~i~l~G~G~~~~~~-~~~GDL~v~i~v~~h~~F~R~G~DL  269 (376)
T PRK14280        229 GQQIRVSGEGEPGVNG-GPAGDLYVVFRVRPHEFFERDGDDI  269 (376)
T ss_pred             CcEEEEcccccCCCCC-CCCcCEEEEEEEecCCCeEEecCCE
Confidence            9999999999997654 5689999999999888877655443

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.07  E-value=2.2e-10  Score=120.33  Aligned_cols=52  Identities=21%  Similarity=0.346  Sum_probs=43.4

Q ss_pred             EEEEeCCCCCCCCEEEEcCCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHHH
Q 011450          315 KDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERAL  367 (485)
Q Consensus       315 ~~l~Ip~g~q~G~~irl~g~G~P~~~~~~~rGDL~V~~~V~~P~~ls~~q~~l  367 (485)
                      ++|.||+|+++|++|+++|+|++...+ ...|||||+|+|..++.|..+..+|
T Consensus       223 i~V~Ip~G~~~G~~I~l~g~G~~~~~~-~~~GDL~v~v~v~~h~~f~R~G~DL  274 (380)
T PRK14297        223 IKVNVPAGVDTGNVIPLRGQGEHGKNG-GPTGDLYINIRVAPHKTFKRKGFDI  274 (380)
T ss_pred             EEEEeCCCCCCCcEEEEecCccCCCCC-CCCccEEEEEEEcCCCCEEEeCCCE
Confidence            688999999999999999999986543 4579999999999999886554333

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.06  E-value=2.5e-10  Score=120.13  Aligned_cols=53  Identities=26%  Similarity=0.427  Sum_probs=44.5

Q ss_pred             eEEEEeCCCCCCCCEEEEcCCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHHH
Q 011450          314 MKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERAL  367 (485)
Q Consensus       314 ~~~l~Ip~g~q~G~~irl~g~G~P~~~~~~~rGDL~V~~~V~~P~~ls~~q~~l  367 (485)
                      .++|.||+|+++|++++++|+|+|...+ ..+|||||+|+|.-.+.+..+..+|
T Consensus       236 ~l~V~Ip~G~~~G~~i~l~g~G~~~~~~-~~~GDL~v~i~v~~h~~F~R~G~DL  288 (389)
T PRK14295        236 TMQVRIPAGVSDGQRIRLRGKGAPGERG-GPAGDLYVVVHVDPHPVFGRSGDNL  288 (389)
T ss_pred             EEEEEeCCCCCCCCEEEEcccccCCCCC-CCCccEEEEEEEecCCCEEEecCCE
Confidence            3689999999999999999999987543 4689999999999888777665444

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.06  E-value=2.7e-10  Score=119.30  Aligned_cols=117  Identities=28%  Similarity=0.543  Sum_probs=81.9

Q ss_pred             CCcccCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEe--------ecccccCCCceeeeceEEEEEcCCCCCCC
Q 011450          178 NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIII--------DHCRRCGGNGEVQSKRSMKVVIPPGVSNG  249 (485)
Q Consensus       178 ~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~--------~~C~~C~G~G~v~~~k~l~V~IP~Gv~dG  249 (485)
                      .....|+.|+|+|.....         ...+|+.|+|+|.+..        ..|..|.|.|.+..       -|--...|
T Consensus       148 ~r~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~-------~~C~~C~G  211 (372)
T PRK14286        148 PRLESCVDCNGSGASKGS---------SPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVIS-------NPCKTCGG  211 (372)
T ss_pred             eccccCCCCcCCCcCCCC---------CCccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEec-------ccCCCCCC
Confidence            456789999999974321         1257999999997643        35999999996521       12112222


Q ss_pred             CEEEEccccCCCCCCCCCccEEEEEEeeccccccccccceEEEEEecchhhccCceEEEEccCCeEEEEeCCCCCCCCEE
Q 011450          250 ATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTV  329 (485)
Q Consensus       250 ~~Ir~~G~Gd~~~~g~~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~i  329 (485)
                             .|-                                                +.. .-.++|.||+|+++|+++
T Consensus       212 -------~g~------------------------------------------------~~~-~~~l~V~Ip~G~~~G~~i  235 (372)
T PRK14286        212 -------QGL------------------------------------------------QEK-RRTINIKIPPGVETGSRL  235 (372)
T ss_pred             -------CcE------------------------------------------------Eec-ceEEEEEECCCCCCCCEE
Confidence                   111                                                110 013689999999999999


Q ss_pred             EEcCCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHHH
Q 011450          330 KLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERAL  367 (485)
Q Consensus       330 rl~g~G~P~~~~~~~rGDL~V~~~V~~P~~ls~~q~~l  367 (485)
                      +++|+|+|..++ ..+|||||+|+|.-++.+..+..+|
T Consensus       236 ~~~g~G~~~~~~-~~~GDL~i~i~v~~h~~F~R~G~DL  272 (372)
T PRK14286        236 KVSGEGEAGPNG-GPHGDLYVVTHIKKHELFERQGNDL  272 (372)
T ss_pred             EECCccccCCCC-CCCceEEEEEEEccCCCEEEecCCE
Confidence            999999997654 4679999999999888777655443

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.06  E-value=2.8e-10  Score=119.42  Aligned_cols=116  Identities=22%  Similarity=0.453  Sum_probs=82.2

Q ss_pred             CCcccCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEe------------ecccccCCCceeeeceEEEEEcCCC
Q 011450          178 NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIII------------DHCRRCGGNGEVQSKRSMKVVIPPG  245 (485)
Q Consensus       178 ~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~------------~~C~~C~G~G~v~~~k~l~V~IP~G  245 (485)
                      .....|+.|+|+|.....         ...+|+.|+|+|.+..            ..|..|.|.|...       .-|-.
T Consensus       144 ~r~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------~~~C~  207 (378)
T PRK14283        144 RHTKKCPVCNGSRAEPGS---------EVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIV-------EKPCS  207 (378)
T ss_pred             eeeccCCCCCccccCCCC---------CCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceec-------CCCCC
Confidence            345689999999964321         1357999999998753            3499999999642       12222


Q ss_pred             CCCCCEEEEccccCCCCCCCCCccEEEEEEeeccccccccccceEEEEEecchhhccCceEEEEccCCeEEEEeCCCCCC
Q 011450          246 VSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQP  325 (485)
Q Consensus       246 v~dG~~Ir~~G~Gd~~~~g~~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~  325 (485)
                      ...|..+..                                                       . .-.++|.||+|+++
T Consensus       208 ~C~G~g~v~-------------------------------------------------------~-~~~l~V~IppG~~~  231 (378)
T PRK14283        208 NCHGKGVVR-------------------------------------------------------E-TKTISVKIPAGVET  231 (378)
T ss_pred             CCCCceeec-------------------------------------------------------c-ceeEEEEECCCCCC
Confidence            222222210                                                       0 01368999999999


Q ss_pred             CCEEEEcCCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHH
Q 011450          326 GDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERA  366 (485)
Q Consensus       326 G~~irl~g~G~P~~~~~~~rGDL~V~~~V~~P~~ls~~q~~  366 (485)
                      |++++++|+|+|...+ +.+|||||+|+|..++.+..+..+
T Consensus       232 G~~i~l~g~G~~~~~~-~~~GDLiv~i~v~~~~~f~r~G~D  271 (378)
T PRK14283        232 GSRLRVSGEGEMGDRG-GEPGDLYVVIKVKPHKIFRREGAN  271 (378)
T ss_pred             CcEEEEeccccCCCCC-CCCccEEEEEEEEcCCCEEEecCC
Confidence            9999999999997653 578999999999999887755433

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.05  E-value=3.1e-10  Score=118.77  Aligned_cols=53  Identities=23%  Similarity=0.341  Sum_probs=44.5

Q ss_pred             eEEEEeCCCCCCCCEEEEcCCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHHH
Q 011450          314 MKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERAL  367 (485)
Q Consensus       314 ~~~l~Ip~g~q~G~~irl~g~G~P~~~~~~~rGDL~V~~~V~~P~~ls~~q~~l  367 (485)
                      .++|.||+|+.+|++|+++|+|.+...+ +..|||||+|+|..++.+..+..+|
T Consensus       226 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~~-~~~GDl~i~i~v~~h~~F~r~G~DL  278 (369)
T PRK14282        226 RTTVKIPAGVEDGTVLRITGGGNAGYYG-GPYGDLYVIVRVRPDPRFKRSGSDL  278 (369)
T ss_pred             EEEEEeCCCCCCCCEEEEecccCCCCCC-CCCCCEEEEEEEecCCcEEEecCCE
Confidence            3789999999999999999999986543 4689999999999888877655444

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.05  E-value=2.9e-10  Score=119.58  Aligned_cols=53  Identities=21%  Similarity=0.381  Sum_probs=43.9

Q ss_pred             eEEEEeCCCCCCCCEEEEcCCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHHH
Q 011450          314 MKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERAL  367 (485)
Q Consensus       314 ~~~l~Ip~g~q~G~~irl~g~G~P~~~~~~~rGDL~V~~~V~~P~~ls~~q~~l  367 (485)
                      .++|.||+|+++|++++|+|+|+|...+ ..+|||||+|+|+-++.+..+..+|
T Consensus       229 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~~-~~~GDL~v~i~v~~h~~F~R~G~DL  281 (386)
T PRK14277        229 KIKVNIPAGIDDGQMITLRGEGEPGIKG-GPNGDLYIVIKVKPHPLFKREGYNV  281 (386)
T ss_pred             EEEEecCCCccCCcEEEEccccccCCCC-CCCccEEEEEEEecCCCeEEecCCE
Confidence            3689999999999999999999996543 4689999999999888777654433

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=99.04  E-value=1e-10  Score=121.03  Aligned_cols=70  Identities=37%  Similarity=0.667  Sum_probs=64.3

Q ss_pred             cCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCC------ccHHHHHHHHHHHHhhhccccccchhcccccc
Q 011450           42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS------PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEA  111 (485)
Q Consensus        42 ~~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~------~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~  111 (485)
                      ..-|+|+|||++.+++..+||++||+|.+|||||+-+.      .+-+|++++|++||+.|+|+..|+.|=.||.-
T Consensus        96 ~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtP  171 (610)
T COG5407          96 RGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTP  171 (610)
T ss_pred             cCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCC
Confidence            35799999999999999999999999999999999763      35788999999999999999999999999864

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.04  E-value=4.8e-10  Score=117.65  Aligned_cols=117  Identities=25%  Similarity=0.421  Sum_probs=81.4

Q ss_pred             CCcccCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEe------------ecccccCCCceeeeceEEEEEcCCC
Q 011450          178 NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIII------------DHCRRCGGNGEVQSKRSMKVVIPPG  245 (485)
Q Consensus       178 ~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~------------~~C~~C~G~G~v~~~k~l~V~IP~G  245 (485)
                      .....|+.|+|+|.....         ...+|+.|+|+|.+..            ..|..|+|.|.+.       .-+-.
T Consensus       137 ~~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------~~~C~  200 (378)
T PRK14278        137 DTAVLCDRCHGKGTAGDS---------KPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVI-------PDPCH  200 (378)
T ss_pred             EeeccCCCCcCccCCCCC---------CceecCCccCceEEEEEEeccceeEEEEEECCCCCccceee-------CCCCC
Confidence            345689999999974321         1357999999997642            3599999999642       11222


Q ss_pred             CCCCCEEEEccccCCCCCCCCCccEEEEEEeeccccccccccceEEEEEecchhhccCceEEEEccCCeEEEEeCCCCCC
Q 011450          246 VSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQP  325 (485)
Q Consensus       246 v~dG~~Ir~~G~Gd~~~~g~~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~  325 (485)
                      ...|..++                                                       .. .-.++|.||||+++
T Consensus       201 ~C~G~g~v-------------------------------------------------------~~-~~~~~V~Ip~G~~~  224 (378)
T PRK14278        201 ECAGDGRV-------------------------------------------------------RA-RREITVKIPAGVGD  224 (378)
T ss_pred             CCCCceeE-------------------------------------------------------ec-ceEEEEEECCCCCC
Confidence            22222111                                                       00 11368999999999


Q ss_pred             CCEEEEcCCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHHH
Q 011450          326 GDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERAL  367 (485)
Q Consensus       326 G~~irl~g~G~P~~~~~~~rGDL~V~~~V~~P~~ls~~q~~l  367 (485)
                      |++|+++|+|.+..+. +..|||||+|+|.-++.+..+..+|
T Consensus       225 G~~i~~~g~G~~~~~~-~~~GDL~v~i~~~~h~~F~R~G~DL  265 (378)
T PRK14278        225 GMRIRLAAQGEVGPGG-GPAGDLYVEVHEQPHDVFVRDGDDL  265 (378)
T ss_pred             CcEEEEccCcCCCCCC-CCCCCEEEEEEECcCCCEEEcCCCE
Confidence            9999999999987543 4579999999999888777655433

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.04  E-value=4.5e-10  Score=116.89  Aligned_cols=53  Identities=23%  Similarity=0.369  Sum_probs=44.8

Q ss_pred             eEEEEeCCCCCCCCEEEEcCCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHHH
Q 011450          314 MKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERAL  367 (485)
Q Consensus       314 ~~~l~Ip~g~q~G~~irl~g~G~P~~~~~~~rGDL~V~~~V~~P~~ls~~q~~l  367 (485)
                      .++|.||+|+++|++++++|+|.+...+ ...|||||+|+|..++.+..+..+|
T Consensus       217 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~~-~~~GDl~v~i~v~~h~~f~r~g~DL  269 (354)
T TIGR02349       217 TITVKIPAGVDTGQRLRVSGKGNAGENG-GPNGDLYVVIRVKPHKIFERDGNDL  269 (354)
T ss_pred             eEEEEECCCCCCCCEEEEecCccCCCCC-CCCCCEEEEEEEecCcceEEecCCE
Confidence            3689999999999999999999986443 4689999999999998888765443

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.02  E-value=5.3e-10  Score=116.96  Aligned_cols=114  Identities=25%  Similarity=0.487  Sum_probs=80.3

Q ss_pred             CcccCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEe--------ecccccCCCceeeeceEEEEEcCCCCCCCC
Q 011450          179 CIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIII--------DHCRRCGGNGEVQSKRSMKVVIPPGVSNGA  250 (485)
Q Consensus       179 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~--------~~C~~C~G~G~v~~~k~l~V~IP~Gv~dG~  250 (485)
                      ....|+.|+|+|....          ...+|+.|+|+|.+..        ..|..|.|.|.+.       .-+.-...|.
T Consensus       139 r~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-------~~~C~~C~G~  201 (369)
T PRK14288        139 YQSVCESCDGTGAKDK----------ALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKII-------KTPCQACKGK  201 (369)
T ss_pred             eeccCCCCCCcccCCC----------CCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEc-------cccCccCCCc
Confidence            3458999999996431          1257999999997643        3599999999642       1112222221


Q ss_pred             EEEEccccCCCCCCCCCccEEEEEEeeccccccccccceEEEEEecchhhccCceEEEEccCCeEEEEeCCCCCCCCEEE
Q 011450          251 TMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVK  330 (485)
Q Consensus       251 ~Ir~~G~Gd~~~~g~~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~ir  330 (485)
                      .+                                                       |.. .-.++|.||+|+++|++++
T Consensus       202 g~-------------------------------------------------------v~~-~~~l~V~IP~G~~~G~~i~  225 (369)
T PRK14288        202 TY-------------------------------------------------------ILK-DEEIDAIIPEGIDDQNRMV  225 (369)
T ss_pred             ce-------------------------------------------------------EEE-EEEEEEecCCCCCCCCEEE
Confidence            11                                                       000 0136899999999999999


Q ss_pred             EcCCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHHH
Q 011450          331 LQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERAL  367 (485)
Q Consensus       331 l~g~G~P~~~~~~~rGDL~V~~~V~~P~~ls~~q~~l  367 (485)
                      ++|+|.+..+  +..|||||+|+|..++.+..+..+|
T Consensus       226 l~g~G~~~~~--~~~GDL~v~i~v~~h~~f~R~G~DL  260 (369)
T PRK14288        226 LKNKGNEYEK--GKRGDLYLEARVKEDEHFKREGCDL  260 (369)
T ss_pred             EccCccCCCC--CCCCCEEEEEEEEECCCcEEeCCEE
Confidence            9999998653  4689999999999999887665444

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.02  E-value=5.6e-10  Score=117.63  Aligned_cols=117  Identities=27%  Similarity=0.583  Sum_probs=81.1

Q ss_pred             CCcccCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEe--------ecccccCCCceeeeceEEEEEcCCCCCCC
Q 011450          178 NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIII--------DHCRRCGGNGEVQSKRSMKVVIPPGVSNG  249 (485)
Q Consensus       178 ~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~--------~~C~~C~G~G~v~~~k~l~V~IP~Gv~dG  249 (485)
                      .....|+.|+|+|.....         ...+|+.|+|+|.+..        ..|+.|.|.|.+..       -|.-...|
T Consensus       156 ~r~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~-------~~C~~C~G  219 (391)
T PRK14284        156 SGYKSCDACSGSGANSSQ---------GIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVIT-------DPCSVCRG  219 (391)
T ss_pred             eeeccCCCCcccccCCCC---------CCeecCccCCeeEEEEEeceEEEEEECCCCCCCCcccC-------CcCCCCCC
Confidence            345689999999974321         1357999999998653        36999999986421       11111111


Q ss_pred             CEEEEccccCCCCCCCCCccEEEEEEeeccccccccccceEEEEEecchhhccCceEEEEccCCeEEEEeCCCCCCCCEE
Q 011450          250 ATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTV  329 (485)
Q Consensus       250 ~~Ir~~G~Gd~~~~g~~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~i  329 (485)
                             .|                                                .|.. ...++|.||+|+.+|++|
T Consensus       220 -------~g------------------------------------------------~v~~-~~~l~V~Ip~G~~~G~~i  243 (391)
T PRK14284        220 -------QG------------------------------------------------RIKD-KRSVHVHIPAGVDSGMRL  243 (391)
T ss_pred             -------cc------------------------------------------------eecc-eEEEEEEECCCCCCCCEE
Confidence                   11                                                1100 013689999999999999


Q ss_pred             EEcCCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHHH
Q 011450          330 KLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERAL  367 (485)
Q Consensus       330 rl~g~G~P~~~~~~~rGDL~V~~~V~~P~~ls~~q~~l  367 (485)
                      +++|+|-+..++ +..|||||+|+|.-++.+..+..+|
T Consensus       244 ~~~g~G~~~~~~-~~~GDL~v~i~v~~h~~F~R~G~DL  280 (391)
T PRK14284        244 KMEGYGDAGQNG-APAGDLYVFIDVEPHPVFERRGDDL  280 (391)
T ss_pred             EEeccccCCCCC-CCCCCEEEEEEEecCCCceeecCCE
Confidence            999999876543 4679999999999888777654433

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.01  E-value=6.9e-10  Score=115.99  Aligned_cols=117  Identities=26%  Similarity=0.536  Sum_probs=80.8

Q ss_pred             CCcccCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEe--------ecccccCCCceeeeceEEEEEcCCCCCCC
Q 011450          178 NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIII--------DHCRRCGGNGEVQSKRSMKVVIPPGVSNG  249 (485)
Q Consensus       178 ~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~--------~~C~~C~G~G~v~~~k~l~V~IP~Gv~dG  249 (485)
                      .....|+.|+|+|......         ..+|+.|+|.|.++.        ..|+.|.|.|.+..       -+--..+|
T Consensus       142 ~r~~~C~~C~G~G~~~~~~---------~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~-------~~C~~C~G  205 (366)
T PRK14294        142 QKLETCEECHGSGCEPGTS---------PTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIV-------SPCKTCHG  205 (366)
T ss_pred             eecccCCCCCCccccCCCC---------cccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeecC-------cCCCCCCC
Confidence            3456899999999753221         357999999997653        35999999996421       11111111


Q ss_pred             CEEEEccccCCCCCCCCCccEEEEEEeeccccccccccceEEEEEecchhhccCceEEEEccCCeEEEEeCCCCCCCCEE
Q 011450          250 ATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTV  329 (485)
Q Consensus       250 ~~Ir~~G~Gd~~~~g~~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~i  329 (485)
                      ..+                                                       |.. ...++|.||+|+++|+++
T Consensus       206 ~g~-------------------------------------------------------v~~-~~~l~V~Ip~G~~~G~~i  229 (366)
T PRK14294        206 QGR-------------------------------------------------------VRV-SKTVQVKIPAGVDTGSRL  229 (366)
T ss_pred             ceE-------------------------------------------------------eec-ceeEEEecCCCCcCCcEE
Confidence            111                                                       100 113689999999999999


Q ss_pred             EEcCCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHHH
Q 011450          330 KLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERAL  367 (485)
Q Consensus       330 rl~g~G~P~~~~~~~rGDL~V~~~V~~P~~ls~~q~~l  367 (485)
                      +++|+|.+...+ +.+|||||+|+|.-++.+..+..+|
T Consensus       230 ~~~g~G~~~~~~-~~~GDl~v~i~v~~h~~F~R~G~DL  266 (366)
T PRK14294        230 RLRGEGEAGVRG-GPPGDLYVFLTVEPHEFFERDGNDV  266 (366)
T ss_pred             EEccCccCCCCC-CCCCcEEEEEEEccCCcceecCCCE
Confidence            999999986543 4689999999999777777655443

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.01  E-value=5.4e-10  Score=117.97  Aligned_cols=53  Identities=17%  Similarity=0.294  Sum_probs=44.4

Q ss_pred             eEEEEeCCCCCCCCEEEEcCCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHHH
Q 011450          314 MKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERAL  367 (485)
Q Consensus       314 ~~~l~Ip~g~q~G~~irl~g~G~P~~~~~~~rGDL~V~~~V~~P~~ls~~q~~l  367 (485)
                      .++|.||+|+++|++|+++|+|.+...+ +..|||||+|++.-++.+..+..+|
T Consensus       236 ~~~V~Ip~G~~~G~~i~~~g~G~~~~~~-~~~GDL~i~i~~~~h~~F~R~G~DL  288 (397)
T PRK14281        236 TVKVTVPAGVQDGNYLTLRGQGNAGPRG-GAPGDLIVVIEEKPHELFVRNGDDV  288 (397)
T ss_pred             EEEEecCCCCCCCCEEEEecccccCCCC-CCCCcEEEEEEEcCCCCeEEecCCE
Confidence            3689999999999999999999987643 4689999999999888777665443

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.00  E-value=6.4e-10  Score=116.43  Aligned_cols=116  Identities=26%  Similarity=0.505  Sum_probs=80.4

Q ss_pred             CCcccCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEe--------ecccccCCCceeeeceEEEEEcCCCCCCC
Q 011450          178 NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIII--------DHCRRCGGNGEVQSKRSMKVVIPPGVSNG  249 (485)
Q Consensus       178 ~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~--------~~C~~C~G~G~v~~~k~l~V~IP~Gv~dG  249 (485)
                      .....|+.|+|+|.....         ....|+.|+|+|.++.        ..|..|.|.|.+..       -+--...|
T Consensus       140 ~r~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~-------~~C~~C~G  203 (371)
T PRK10767        140 PTLVTCDTCHGSGAKPGT---------SPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIK-------DPCKKCHG  203 (371)
T ss_pred             eecccCCCCCCcccCCCC---------CCccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeECC-------CCCCCCCC
Confidence            345689999999975321         1247999999997643        35999999996421       11111122


Q ss_pred             CEEEEccccCCCCCCCCCccEEEEEEeeccccccccccceEEEEEecchhhccCceEEEEccCCeEEEEeCCCCCCCCEE
Q 011450          250 ATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTV  329 (485)
Q Consensus       250 ~~Ir~~G~Gd~~~~g~~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~i  329 (485)
                      ..+                                                       +.. .-.++|.||+|+++|+++
T Consensus       204 ~g~-------------------------------------------------------v~~-~~~l~V~Ip~G~~~G~~i  227 (371)
T PRK10767        204 QGR-------------------------------------------------------VEK-EKTLSVKIPAGVDTGDRI  227 (371)
T ss_pred             Cce-------------------------------------------------------Eee-eeeEEEecCCCCCCCcEE
Confidence            111                                                       100 013689999999999999


Q ss_pred             EEcCCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHH
Q 011450          330 KLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERA  366 (485)
Q Consensus       330 rl~g~G~P~~~~~~~rGDL~V~~~V~~P~~ls~~q~~  366 (485)
                      +++|+|++.... +.+|||||+|+|.-++.+..+..+
T Consensus       228 ~~~g~G~~~~~~-~~~GDL~v~i~v~~h~~F~R~G~D  263 (371)
T PRK10767        228 RLSGEGEAGERG-GPAGDLYVQIHVKEHPIFERDGND  263 (371)
T ss_pred             EEecCccCCCCC-CCCcCEEEEEEEeeCCCEEEecCC
Confidence            999999986544 468999999999988777655433

>PRK14300 chaperone protein DnaJ; Provisional

Probab=98.99  E-value=7.9e-10  Score=115.79  Aligned_cols=117  Identities=23%  Similarity=0.428  Sum_probs=81.4

Q ss_pred             CCcccCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEe--------ecccccCCCceeeeceEEEEEcCCCCCCC
Q 011450          178 NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIII--------DHCRRCGGNGEVQSKRSMKVVIPPGVSNG  249 (485)
Q Consensus       178 ~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~--------~~C~~C~G~G~v~~~k~l~V~IP~Gv~dG  249 (485)
                      .....|+.|+|+|.....         ...+|+.|+|+|.++.        ..|..|.|.|.+.       .-|--..+|
T Consensus       143 ~r~~~C~~C~G~g~~~~~---------~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-------~~~C~~C~G  206 (372)
T PRK14300        143 SSEVKCDTCHGSGSEKGE---------TVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQII-------KNPCKKCHG  206 (372)
T ss_pred             eeccccCCCCCcccCCCC---------CCccCCCccCeEEEEEeeceEEEEEeCCCCCccceEe-------CCCCCCCCC
Confidence            445789999999975321         1358999999997643        3599999999652       122222222


Q ss_pred             CEEEEccccCCCCCCCCCccEEEEEEeeccccccccccceEEEEEecchhhccCceEEEEccCCeEEEEeCCCCCCCCEE
Q 011450          250 ATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTV  329 (485)
Q Consensus       250 ~~Ir~~G~Gd~~~~g~~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~i  329 (485)
                      ..++-..                                                        -.++|.||+|+++|++|
T Consensus       207 ~g~v~~~--------------------------------------------------------~~~~V~Ip~G~~~G~~i  230 (372)
T PRK14300        207 MGRYHKQ--------------------------------------------------------RNLSVNIPAGVENGTRI  230 (372)
T ss_pred             ceEEEee--------------------------------------------------------EEEEEEECCCCCCCcEE
Confidence            2211000                                                        03689999999999999


Q ss_pred             EEcCCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHHH
Q 011450          330 KLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERAL  367 (485)
Q Consensus       330 rl~g~G~P~~~~~~~rGDL~V~~~V~~P~~ls~~q~~l  367 (485)
                      +++|+|.+...+ +..|||||+|+|.-.+.+..+..+|
T Consensus       231 ~l~g~G~~~~~~-~~~GDL~v~i~v~~h~~f~R~G~Dl  267 (372)
T PRK14300        231 RHTGEGEAGIRG-GNSGDLYVDIAIKPHDIYKVDGANL  267 (372)
T ss_pred             EEeccccCCCCC-CCCCCEEEEEEECCCCCeEEecCCE
Confidence            999999986443 4679999999999887776554433

>PRK14291 chaperone protein DnaJ; Provisional

Probab=98.90  E-value=3.1e-09  Score=111.71  Aligned_cols=53  Identities=25%  Similarity=0.310  Sum_probs=43.6

Q ss_pred             eEEEEeCCCCCCCCEEEEcCCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHHH
Q 011450          314 MKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERAL  367 (485)
Q Consensus       314 ~~~l~Ip~g~q~G~~irl~g~G~P~~~~~~~rGDL~V~~~V~~P~~ls~~q~~l  367 (485)
                      .++|.||+|+.+|++|+++|+|-....+ +..|||||+|++.-++.+..+..+|
T Consensus       225 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~g-~~~GDL~v~i~~~~h~~F~r~G~DL  277 (382)
T PRK14291        225 TIKVRIPPGVDNGSKLRVPGKGHAGRFG-GPPGDLYIIVKVKPHPLFERRGDNL  277 (382)
T ss_pred             EEEEEeCCCCCCCCEEEEecCcCCCCCC-CCCccEEEEEEEccCCCeeeecCCe
Confidence            3789999999999999999999865433 4689999999999888877655443

>PRK14290 chaperone protein DnaJ; Provisional

Probab=98.88  E-value=2.2e-09  Score=112.16  Aligned_cols=57  Identities=23%  Similarity=0.421  Sum_probs=50.9

Q ss_pred             eEEEEEcCCCCCCCCEEEEccccCCCCCCCCCccEEEEEEeeccccccccccceEEE
Q 011450          236 RSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSK  292 (485)
Q Consensus       236 k~l~V~IP~Gv~dG~~Ir~~G~Gd~~~~g~~~GDL~v~I~v~~h~~F~R~G~DL~~~  292 (485)
                      ..++|.||+|+++|++|+++|+|.+...+..+|||||+|+|..++.|++++.+|+.+
T Consensus       296 g~i~V~Ip~g~~~g~~iri~g~G~p~~~~~~~GDL~V~~~V~~P~~l~~~~~~ll~~  352 (365)
T PRK14290        296 EKYNLKIPEGTQPGEVLKIKGAGMPHLNGHGSGDLLVRINVEVPKRLTSKQKELIRE  352 (365)
T ss_pred             ceEEEEECCccCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence            368999999999999999999999866556789999999999999999998887655

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=98.88  E-value=3e-09  Score=112.90  Aligned_cols=51  Identities=18%  Similarity=0.259  Sum_probs=43.1

Q ss_pred             EEEEeCCCCCCCCEEEEcCCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHHH
Q 011450          315 KDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERAL  367 (485)
Q Consensus       315 ~~l~Ip~g~q~G~~irl~g~G~P~~~~~~~rGDL~V~~~V~~P~~ls~~q~~l  367 (485)
                      ++|.||+|+.+|++|+++|+|-...+  +..|||||+|+++-.+.|..+..+|
T Consensus       226 l~V~Ip~G~~dG~~I~~~G~Gd~~~~--~~pGDLiv~I~~~ph~~F~R~G~DL  276 (421)
T PTZ00037        226 LEVNIDKGVPNQHKITFHGEADEKPN--EIPGNVVFILNEKPHDTFKREGGDL  276 (421)
T ss_pred             EEEeeCCCCCCCcEEEEecccCCCCC--CCCCcEEEEEEecCCCCcEEeCCeE
Confidence            68999999999999999999987654  4689999999999888777655444

>PRK14299 chaperone protein DnaJ; Provisional

Probab=98.87  E-value=2.1e-09  Score=108.99  Aligned_cols=78  Identities=28%  Similarity=0.411  Sum_probs=68.8

Q ss_pred             ccccccceEEEEEecchhhccCceEEEEccCC-eEEEEeCCCCCCCCEEEEcCCCCCCCCCCCCCccEEEEEEEEcCCCC
Q 011450          282 IHRDGLNLFSKISVDYTEAILGTSMEVETVEG-MKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDI  360 (485)
Q Consensus       282 F~R~G~DL~~~~~Isl~eAllG~~i~V~tldG-~~~l~Ip~g~q~G~~irl~g~G~P~~~~~~~rGDL~V~~~V~~P~~l  360 (485)
                      +.|+|.||++.+.|||.||++|+++.| +++| .++|+||+|+++|++++++|+|++.       |||||+|+|+-++.+
T Consensus       125 ~~~~g~dl~~~l~isL~ea~~G~~~~i-~l~g~~~~V~Ip~G~~~G~~ir~~g~G~~~-------GDL~v~i~v~~h~~f  196 (291)
T PRK14299        125 RARKGRDLEAELPLTLEEAYRGGEKVV-EVAGERLSVRIPPGVREGQVIRLAGKGRQG-------GDLYLVVRLLPHPVF  196 (291)
T ss_pred             CCCCCCCEEEEEEecHHHHhCCCeEEE-eeCCEEEEEecCCCcCCCcEEEECCCCCCC-------CCEEEEEEEcCCCCe
Confidence            357899999999999999999999998 5677 4799999999999999999999862       999999999998887


Q ss_pred             ChhHHHH
Q 011450          361 SDPERAL  367 (485)
Q Consensus       361 s~~q~~l  367 (485)
                      ..+..+|
T Consensus       197 ~R~G~DL  203 (291)
T PRK14299        197 RLEGDDL  203 (291)
T ss_pred             EEECCEE
Confidence            7665444

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=98.86  E-value=3e-09  Score=98.58  Aligned_cols=52  Identities=31%  Similarity=0.450  Sum_probs=46.0

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCCCCc------cHHHHHHHHHHHHhhhccccccchhcc
Q 011450           56 ATLQEIKTSYRKLARKYHPDINKSP------GAEEKFKEISSAYEVLSDDEKRSVYDR  107 (485)
Q Consensus        56 As~~eIk~AYr~la~k~HPD~n~~~------~a~e~F~~I~~AYevLsDp~kR~~YD~  107 (485)
                      .+..+|+++||+|+++||||+....      .+.+.|+.||+||++|+||.+|+.|+.
T Consensus         3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL   60 (157)
T TIGR00714         3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYML   60 (157)
T ss_pred             CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence            4788999999999999999986432      266889999999999999999999995

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=98.84  E-value=4e-09  Score=99.14  Aligned_cols=63  Identities=19%  Similarity=0.265  Sum_probs=55.7

Q ss_pred             CCcchhccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc------HHHHHHHHHHHHhhhccccccchhc
Q 011450           44 TDYYSTLNVRQN--ATLQEIKTSYRKLARKYHPDINKSPG------AEEKFKEISSAYEVLSDDEKRSVYD  106 (485)
Q Consensus        44 ~d~Y~iLgv~~~--As~~eIk~AYr~la~k~HPD~n~~~~------a~e~F~~I~~AYevLsDp~kR~~YD  106 (485)
                      .|||++||+++.  .+..++++.|++|.+++|||+.....      +.+.-..||+||.+|+||.+|+.|=
T Consensus         2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YL   72 (173)
T PRK01773          2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAI   72 (173)
T ss_pred             CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHH
Confidence            599999999998  89999999999999999999975433      3445678999999999999999995

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=98.66  E-value=3.2e-08  Score=101.16  Aligned_cols=82  Identities=18%  Similarity=0.340  Sum_probs=66.2

Q ss_pred             ccccceEEEEEecchhhccCceEEE----EccC--C--------eEEEEeCCCCCCCCEEEEcCCCCCCCCCCCCCccEE
Q 011450          284 RDGLNLFSKISVDYTEAILGTSMEV----ETVE--G--------MKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHL  349 (485)
Q Consensus       284 R~G~DL~~~~~Isl~eAllG~~i~V----~tld--G--------~~~l~Ip~g~q~G~~irl~g~G~P~~~~~~~rGDL~  349 (485)
                      ++|.||++.+.|+|.||+.|+...|    ++++  |        .++|.||+|+++|++++++|+|+|..++ ..+||||
T Consensus       115 ~kg~di~~~v~isLee~~~G~~k~i~~~~~~~~g~G~~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~-~~~GDl~  193 (306)
T PRK10266        115 ARGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENG-GPNGDLW  193 (306)
T ss_pred             CCCCceEEEEEEEHHHhcCCceEEEEEecccccCCCeEEEeeeEEEEEEECCCCcCCcEEEEecCCcCCCCC-CCCccEE
Confidence            5689999999999999999996554    3343  3        3688899999999999999999997543 5689999


Q ss_pred             EEEEEEcCCCCChhHHH
Q 011450          350 FIVNVLIPKDISDPERA  366 (485)
Q Consensus       350 V~~~V~~P~~ls~~q~~  366 (485)
                      |+|+|.-.+.+..+..+
T Consensus       194 v~i~v~ph~~f~r~g~D  210 (306)
T PRK10266        194 LVIHIAPHPLFDIVGQD  210 (306)
T ss_pred             EEEEEcCCCCeEEeCCc
Confidence            99999965666655433

>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.52  E-value=7.2e-08  Score=90.86  Aligned_cols=64  Identities=30%  Similarity=0.470  Sum_probs=57.6

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCC--ccHHHHHHHHHHHHhhhccccccchhc
Q 011450           43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS--PGAEEKFKEISSAYEVLSDDEKRSVYD  106 (485)
Q Consensus        43 ~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~--~~a~e~F~~I~~AYevLsDp~kR~~YD  106 (485)
                      ..|+|+||.|.++.+.++||+.||+|.+-.|||+|++  +.|...|--|..||..|-|+.-|..-+
T Consensus        52 nLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~  117 (250)
T KOG1150|consen   52 NLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCL  117 (250)
T ss_pred             ccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence            5799999999999999999999999999999999985  568889999999999999998655443

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=6.6e-08  Score=94.83  Aligned_cols=66  Identities=36%  Similarity=0.488  Sum_probs=59.4

Q ss_pred             CCCcchhccCCCC---CCHHHHHHHHHHHHHHhCCCCCC---CccHHHHHHHHHHHHhhhccccccchhccc
Q 011450           43 GTDYYSTLNVRQN---ATLQEIKTSYRKLARKYHPDINK---SPGAEEKFKEISSAYEVLSDDEKRSVYDRF  108 (485)
Q Consensus        43 ~~d~Y~iLgv~~~---As~~eIk~AYr~la~k~HPD~n~---~~~a~e~F~~I~~AYevLsDp~kR~~YD~~  108 (485)
                      ..|+|.+|||+..   |++.+|.+|.++...+||||+..   +.+..+-|+.|+.||+||+|+.+|.+||.-
T Consensus        42 ~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~  113 (379)
T COG5269          42 KVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSN  113 (379)
T ss_pred             hhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhcccc
Confidence            3799999999876   89999999999999999999873   345678999999999999999999999974

>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.29  E-value=5.8e-07  Score=86.47  Aligned_cols=55  Identities=25%  Similarity=0.567  Sum_probs=51.6

Q ss_pred             CCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHh-hhcc
Q 011450           44 TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYE-VLSD   98 (485)
Q Consensus        44 ~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYe-vLsD   98 (485)
                      +.||.+|||..+|+.+|++.||.+||+++|||...+....++|.+|.+||. ||+.
T Consensus        47 ~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~  102 (342)
T KOG0568|consen   47 MECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQE  102 (342)
T ss_pred             HHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHH
Confidence            589999999999999999999999999999999988788899999999998 8874

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=98.21  E-value=2.5e-06  Score=74.44  Aligned_cols=57  Identities=37%  Similarity=0.753  Sum_probs=44.7

Q ss_pred             cccccCCCCCCCCCCcccCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEeecccccCCCceee
Q 011450          165 LDIRCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQ  233 (485)
Q Consensus       165 ~di~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~  233 (485)
                      .+..|+|+|..      +|+.|+|+|.+...+   .+.++...+|+.|+|+|+.   .|+.|.|+|++.
T Consensus        43 ~C~~C~GsG~~------~C~~C~G~G~v~~~~---~g~~q~~~~C~~C~G~Gk~---~C~~C~G~G~~~   99 (111)
T PLN03165         43 PCFPCSGTGAQ------VCRFCVGSGNVTVEL---GGGEKEVSKCINCDGAGSL---TCTTCQGSGIQP   99 (111)
T ss_pred             CCCCCCCCCCc------CCCCCcCcCeEEEEe---CCcEEEEEECCCCCCccee---eCCCCCCCEEEe
Confidence            44559999973      899999999887543   2345567899999999975   399999999764

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.16  E-value=1.9e-06  Score=97.01  Aligned_cols=54  Identities=39%  Similarity=0.568  Sum_probs=46.8

Q ss_pred             cCCCcchhccCCCC----CCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhhhc
Q 011450           42 AGTDYYSTLNVRQN----ATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLS   97 (485)
Q Consensus        42 ~~~d~Y~iLgv~~~----As~~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYevLs   97 (485)
                      ..-+-|+||.|+-+    -..+.||++|+|||++||||+|  |+..++|..+++|||.|+
T Consensus      1279 S~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKN--PEGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1279 SVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKN--PEGREMFERVNKAYELLS 1336 (2235)
T ss_pred             chHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCC--chHHHHHHHHHHHHHHHH
Confidence            45688999999855    2447899999999999999999  466799999999999998

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=98.08  E-value=2.9e-06  Score=80.52  Aligned_cols=49  Identities=27%  Similarity=0.609  Sum_probs=45.1

Q ss_pred             EeecccCCCCcEEEe--ecccccCCCceeeeceEEEEEcCCCCCCCCEEEEc
Q 011450          206 VSTCSKCGGDGKIII--DHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIR  255 (485)
Q Consensus       206 ~~~C~~C~G~G~~i~--~~C~~C~G~G~v~~~k~l~V~IP~Gv~dG~~Ir~~  255 (485)
                      ..+|+.|+|+|+++.  .+|+.|+|.|+++.++++.+.+ .|+.+|++|++.
T Consensus        99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~~~~~~k~-~g~~~g~~it~~  149 (186)
T TIGR02642        99 SCKCPRCRGTGLIQRRQRECDTCAGTGRFRPTVEDLLKS-FGVDSGAAIVLK  149 (186)
T ss_pred             CCcCCCCCCeeEEecCCCCCCCCCCccEEeeeEEEEEEe-eeccCCceeeHH
Confidence            568999999999997  5799999999999999999999 999999999875

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=97.83  E-value=2.1e-05  Score=87.53  Aligned_cols=71  Identities=49%  Similarity=0.871  Sum_probs=67.6

Q ss_pred             CCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhhhccccccchhccccccCcC
Q 011450           44 TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGIT  114 (485)
Q Consensus        44 ~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~  114 (485)
                      +|||++|||+++|+.++||+|||+||++||||+++.+.+.++|++|++||++|+||.+|+.||+||.++..
T Consensus         2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~d   72 (871)
T TIGR03835         2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHDGVD   72 (871)
T ss_pred             CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccccc
Confidence            69999999999999999999999999999999998888889999999999999999999999999987654

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress

Probab=97.45  E-value=0.00017  Score=59.36  Aligned_cols=46  Identities=30%  Similarity=0.616  Sum_probs=35.7

Q ss_pred             ceEEEEEcCCCCCCCCEEEEccccCCCCCCC-CCccEEEEEEeeccc
Q 011450          235 KRSMKVVIPPGVSNGATMQIRGEGNFDRRRS-LAGDLFVALHVDEKQ  280 (485)
Q Consensus       235 ~k~l~V~IP~Gv~dG~~Ir~~G~Gd~~~~g~-~~GDL~v~I~v~~h~  280 (485)
                      .+.++|.||+|+++|++++++|+|.+...+. ..|||||+++|.-..
T Consensus        26 g~~~~i~ip~~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~   72 (81)
T PF01556_consen   26 GKTIKIKIPPGTQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPK   72 (81)
T ss_dssp             S-EEEEEETST-STT-EEEETTESEEESSSTTSBEEEEEEEEEE--S
T ss_pred             CCEEEEeccCccCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCC
Confidence            3689999999999999999999999654444 899999999998443

The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....

>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.22  E-value=0.00052  Score=58.96  Aligned_cols=53  Identities=25%  Similarity=0.312  Sum_probs=44.7

Q ss_pred             CCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhhhccc
Q 011450           44 TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDD   99 (485)
Q Consensus        44 ~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYevLsDp   99 (485)
                      +.--.||||+++++.+.||+|+|++-...|||+..+|--.   ..||||+++|...
T Consensus        56 ~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSPYlA---sKINEAKdlLe~~  108 (112)
T KOG0723|consen   56 REAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPYLA---SKINEAKDLLEGT  108 (112)
T ss_pred             HHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCHHHH---HHHHHHHHHHhcc
Confidence            3445699999999999999999999999999999776422   5799999999743

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=96.96  E-value=0.00065  Score=53.84  Aligned_cols=42  Identities=33%  Similarity=0.926  Sum_probs=28.8

Q ss_pred             CCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEee------------cccccCCCceee
Q 011450          183 CKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID------------HCRRCGGNGEVQ  233 (485)
Q Consensus       183 C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~------------~C~~C~G~G~v~  233 (485)
                      |+.|+|+|.....         ...+|+.|+|+|.+...            .|+.|+|.|.+.
T Consensus         1 C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i   54 (66)
T PF00684_consen    1 CPKCNGTGAKPGK---------KPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII   54 (66)
T ss_dssp             -CCCTTTSB-STT---------T-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-
T ss_pred             CCcCCCcccCCCC---------CCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE
Confidence            8899999984221         13689999999988653            299999999763

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.86  E-value=0.0018  Score=66.72  Aligned_cols=46  Identities=33%  Similarity=0.527  Sum_probs=39.5

Q ss_pred             eceEEEEEcCCC--CCCCCEEEEccccCCCCCCCCCccEEEEEEeeccc
Q 011450          234 SKRSMKVVIPPG--VSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQ  280 (485)
Q Consensus       234 ~~k~l~V~IP~G--v~dG~~Ir~~G~Gd~~~~g~~~GDL~v~I~v~~h~  280 (485)
                      ..+.+++.++||  +.+|+++++.|+|.+-.... .|||||..+|+-.+
T Consensus       277 dGr~l~~~~~pg~vi~~~~~~~v~~~gmp~~~~~-~g~lyi~~~v~fp~  324 (337)
T KOG0712|consen  277 DGRLLKLSSKPGEVISPGDTKRVEGEGMPIFRNP-KGDLYIKFEVKFPK  324 (337)
T ss_pred             CCceEEEecCCCceeChhHEEeecCCCcccccCC-CCcEEEEEEEEcCC
Confidence            457899999999  99999999999999865554 99999999987443

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

Probab=96.63  E-value=0.0011  Score=71.70  Aligned_cols=66  Identities=33%  Similarity=0.735  Sum_probs=36.7

Q ss_pred             ccccCCCCCCCCCCcccCCCCCCCCeeeeee--------ecCCceeee-EeecccCCCCcEE-EeecccccCCCcee
Q 011450          166 DIRCGGTGAKSSNCIQSCKACWGRGGVLKTQ--------RTPFGLISQ-VSTCSKCGGDGKI-IIDHCRRCGGNGEV  232 (485)
Q Consensus       166 di~C~GtG~~~~~~~~~C~~C~G~G~~~~~~--------~~~~g~~~~-~~~C~~C~G~G~~-i~~~C~~C~G~G~v  232 (485)
                      |..|+|+|... .....|+.|+|+|..-...        +..+-++.. ..+|+.|.|+|++ +...|+.|.|+|.+
T Consensus         5 C~~C~g~G~i~-v~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~~~c~~c~G~gkv   80 (715)
T COG1107           5 CPECGGKGKIV-VGEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYDTCPECGGTGKV   80 (715)
T ss_pred             ccccCCCceEe-eeeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEEeecccCCCceeE
Confidence            45577776543 2345688888887652110        001111221 2478888888766 34567777777744

>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=96.31  E-value=0.0032  Score=57.80  Aligned_cols=66  Identities=23%  Similarity=0.432  Sum_probs=52.6

Q ss_pred             ccCCCcchhccCCCC--CCHHHHHHHHHHHHHHhCCCCCCC------ccHHHHHHHHHHHHhhhccccccchhc
Q 011450           41 AAGTDYYSTLNVRQN--ATLQEIKTSYRKLARKYHPDINKS------PGAEEKFKEISSAYEVLSDDEKRSVYD  106 (485)
Q Consensus        41 ~~~~d~Y~iLgv~~~--As~~eIk~AYr~la~k~HPD~n~~------~~a~e~F~~I~~AYevLsDp~kR~~YD  106 (485)
                      ...++||.++|....  ..++-.+.-|--..++.|||+...      .-|.+.-.++++||.+|.||-+|+.|=
T Consensus         5 ~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yi   78 (168)
T KOG3192|consen    5 GSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYL   78 (168)
T ss_pred             chHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            456799999977544  566666668899999999998431      236677889999999999999999995

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=95.58  E-value=0.0068  Score=57.12  Aligned_cols=53  Identities=38%  Similarity=0.532  Sum_probs=46.6

Q ss_pred             CCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCC--------ccHHHHHHHHHHHHhhh
Q 011450           44 TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS--------PGAEEKFKEISSAYEVL   96 (485)
Q Consensus        44 ~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~--------~~a~e~F~~I~~AYevL   96 (485)
                      .+.|.+|++...++..+|+++|+++...+|||+-..        ..+.+++++|++||+.+
T Consensus       113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~  173 (174)
T COG1076         113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI  173 (174)
T ss_pred             hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            689999999999999999999999999999997431        35788999999999853

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

Probab=95.22  E-value=0.014  Score=63.56  Aligned_cols=44  Identities=32%  Similarity=0.723  Sum_probs=34.7

Q ss_pred             cccCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEee---------------------cccccCCCceee
Q 011450          180 IQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID---------------------HCRRCGGNGEVQ  233 (485)
Q Consensus       180 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~---------------------~C~~C~G~G~v~  233 (485)
                      +.+|+.|+|+|.+...          ...|+.|+|+|+.-..                     .|..|+|.|.+.
T Consensus         2 ~~~C~~C~g~G~i~v~----------~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~   66 (715)
T COG1107           2 IKKCPECGGKGKIVVG----------EEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVT   66 (715)
T ss_pred             CccccccCCCceEeee----------eeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEE
Confidence            4689999999987543          3579999999987210                     299999999875

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=95.05  E-value=0.024  Score=49.63  Aligned_cols=38  Identities=34%  Similarity=0.885  Sum_probs=30.4

Q ss_pred             CcccCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEe---------ecccccCCCce
Q 011450          179 CIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIII---------DHCRRCGGNGE  231 (485)
Q Consensus       179 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~---------~~C~~C~G~G~  231 (485)
                      ....|..|+|+|..               +|+.|+|.|.+..         ..|+.|+|.|.
T Consensus        40 ~~v~C~~C~GsG~~---------------~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk   86 (111)
T PLN03165         40 NTQPCFPCSGTGAQ---------------VCRFCVGSGNVTVELGGGEKEVSKCINCDGAGS   86 (111)
T ss_pred             cCCCCCCCCCCCCc---------------CCCCCcCcCeEEEEeCCcEEEEEECCCCCCcce
Confidence            45789999999961               6999999987643         24999999994

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=94.84  E-value=0.029  Score=57.18  Aligned_cols=44  Identities=18%  Similarity=0.317  Sum_probs=35.4

Q ss_pred             EEEEeCCCCCCCCEEEEcCCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHHH
Q 011450          315 KDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERAL  367 (485)
Q Consensus       315 ~~l~Ip~g~q~G~~irl~g~G~P~~~~~~~rGDL~V~~~V~~P~~ls~~q~~l  367 (485)
                      +.|.+|+|+..+.++++++.|-         .||+|.+.|..-..+..+...+
T Consensus       235 i~i~~~~g~~~~~~l~~~~~~~---------~~l~v~~~v~~~~~~~r~~~~i  278 (288)
T KOG0715|consen  235 IMIVLPAGVRSADTLRFAGHGN---------DDLFVRLIVAKSPSFRREGKDI  278 (288)
T ss_pred             EEeecCcccccccEEEEecCCc---------ceEEEEEEeccCcccccccCcc
Confidence            6789999999999999999863         2999999999877776444333

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=94.57  E-value=0.019  Score=54.18  Aligned_cols=63  Identities=30%  Similarity=0.455  Sum_probs=49.7

Q ss_pred             CcchhccCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcc------HHHHHHHHHHHHhhhccccccchhcc
Q 011450           45 DYYSTLNVRQNA--TLQEIKTSYRKLARKYHPDINKSPG------AEEKFKEISSAYEVLSDDEKRSVYDR  107 (485)
Q Consensus        45 d~Y~iLgv~~~A--s~~eIk~AYr~la~k~HPD~n~~~~------a~e~F~~I~~AYevLsDp~kR~~YD~  107 (485)
                      ||+...|.++.+  ..+.++..|+.+++.||||+.....      +.+.+..++.||.+|.||-+|+.|=.
T Consensus         2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~l   72 (174)
T COG1076           2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLL   72 (174)
T ss_pred             CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            455566666654  4456899999999999999986432      44578899999999999999999964

>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]

Probab=94.13  E-value=0.048  Score=55.47  Aligned_cols=23  Identities=35%  Similarity=0.892  Sum_probs=14.1

Q ss_pred             EeecccCCCCcEEEeecccccCCCce
Q 011450          206 VSTCSKCGGDGKIIIDHCRRCGGNGE  231 (485)
Q Consensus       206 ~~~C~~C~G~G~~i~~~C~~C~G~G~  231 (485)
                      ...|..|+|+|..   .|.+|.|+|.
T Consensus       234 ~~~C~~C~G~G~~---~C~tC~grG~  256 (406)
T KOG2813|consen  234 HDLCYMCHGRGIK---ECHTCKGRGK  256 (406)
T ss_pred             cchhhhccCCCcc---cCCcccCCCC
Confidence            3567788887743   3555555553

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=93.86  E-value=0.04  Score=52.59  Aligned_cols=31  Identities=26%  Similarity=0.677  Sum_probs=24.1

Q ss_pred             cccCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEe
Q 011450          180 IQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIII  220 (485)
Q Consensus       180 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~  220 (485)
                      ..+|+.|+|+|.++..          ..+|+.|+|+|++-.
T Consensus        99 ~~~C~~C~G~G~~i~~----------~~~C~~C~G~G~v~~  129 (186)
T TIGR02642        99 SCKCPRCRGTGLIQRR----------QRECDTCAGTGRFRP  129 (186)
T ss_pred             CCcCCCCCCeeEEecC----------CCCCCCCCCccEEee
Confidence            5689999999987642          146999999998754

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]

Probab=93.04  E-value=0.057  Score=54.92  Aligned_cols=26  Identities=35%  Similarity=0.905  Sum_probs=19.6

Q ss_pred             eecccCCCCcEEEeecccccCCCceeeec
Q 011450          207 STCSKCGGDGKIIIDHCRRCGGNGEVQSK  235 (485)
Q Consensus       207 ~~C~~C~G~G~~i~~~C~~C~G~G~v~~~  235 (485)
                      ..|+.|.|.|.+   +|.+|.|+|.+..-
T Consensus       246 ~~C~tC~grG~k---~C~TC~gtgsll~~  271 (406)
T KOG2813|consen  246 KECHTCKGRGKK---PCTTCSGTGSLLNY  271 (406)
T ss_pred             ccCCcccCCCCc---ccccccCccceeee
Confidence            369999999853   69999998865433

>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]

Probab=91.69  E-value=0.19  Score=54.35  Aligned_cols=25  Identities=32%  Similarity=0.429  Sum_probs=22.6

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCCCCc
Q 011450           56 ATLQEIKTSYRKLARKYHPDINKSP   80 (485)
Q Consensus        56 As~~eIk~AYr~la~k~HPD~n~~~   80 (485)
                      .+.+++||||||..+..|||+-+..
T Consensus       400 Vtp~~VKKaYrKA~L~VHPDKlqq~  424 (453)
T KOG0431|consen  400 VTPAQVKKAYRKAVLCVHPDKLQQK  424 (453)
T ss_pred             cCHHHHHHHHHhhhheeCcccccCC
Confidence            5899999999999999999998644

>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []

Probab=82.66  E-value=2.5  Score=38.01  Aligned_cols=53  Identities=23%  Similarity=0.265  Sum_probs=36.2

Q ss_pred             CcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhhhcccc
Q 011450           45 DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDE  100 (485)
Q Consensus        45 d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYevLsDp~  100 (485)
                      .-..||||++.++.++|.+.|.+|-...+|++..+.--   =..|..|.|.|..+.
T Consensus        59 EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGSfYL---QSKV~rAKErl~~El  111 (127)
T PF03656_consen   59 EARQILNVKEELSREEIQKRYKHLFKANDPSKGGSFYL---QSKVFRAKERLEQEL  111 (127)
T ss_dssp             HHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-HHH---HHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCCHHH---HHHHHHHHHHHHHHH
Confidence            44689999999999999999999999999998743211   136777888876443

In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.

>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]

Probab=82.43  E-value=1.2  Score=46.01  Aligned_cols=52  Identities=40%  Similarity=0.596  Sum_probs=43.5

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCCC-----CccHHHHHHHHHHHHhhhccccccchhcc
Q 011450           56 ATLQEIKTSYRKLARKYHPDINK-----SPGAEEKFKEISSAYEVLSDDEKRSVYDR  107 (485)
Q Consensus        56 As~~eIk~AYr~la~k~HPD~n~-----~~~a~e~F~~I~~AYevLsDp~kR~~YD~  107 (485)
                      ++..+|+.+|+..++..||+.-.     .-..++.|+.|.+||++|.+.++|..+|.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~   60 (335)
T KOG0724|consen    4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDS   60 (335)
T ss_pred             ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhh
Confidence            67889999999999999999873     22456779999999999999777766665

>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised

Probab=81.61  E-value=2.4  Score=40.83  Aligned_cols=38  Identities=26%  Similarity=0.518  Sum_probs=30.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhhhc
Q 011450           53 RQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLS   97 (485)
Q Consensus        53 ~~~As~~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYevLs   97 (485)
                      +++||.|||.+|+.++..+|--|       ++.-.+|-.||+.+-
T Consensus         1 S~~ASfeEIq~Arn~ll~~y~gd-------~~~~~~IEaAYD~IL   38 (194)
T PF11833_consen    1 SEDASFEEIQAARNRLLAQYAGD-------EKSREAIEAAYDAIL   38 (194)
T ss_pred             CCCCCHHHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHHH
Confidence            57999999999999999998433       344567999998543

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	485
1hdj_A	77	Human Hsp40 (Hdj-1), Nmr Length = 77		2e-20
2lo1_A	71	Nmr Structure Of The Protein Bc008182, A Dnaj-Like		8e-17
2kqx_A	73	Nmr Structure Of The J-Domain (Residues 2-72) In Th		2e-16
2cug_A	88	Solution Structure Of The J Domain Of The Pseudo Dn		3e-15
1bq0_A	103	J-Domain (Residues 1-77) Of The Escherichia Coli N-		7e-15
3lz8_A	329	Structure Of A Putative Chaperone Dnaj From Klebsie		7e-15
3lz8_A	329	Structure Of A Putative Chaperone Dnaj From Klebsie		7e-07
2dn9_A	79	Solution Structure Of J-Domain From The Dnaj Homolo		8e-15
2lgw_A	99	Solution Structure Of The J Domain Of Hsj1a Length		1e-14
1xbl_A	107	Nmr Structure Of The J-Domain (Residues 2-76) In Th		1e-14
2ctw_A	109	Solution Structure Of J-Domain From Mouse Dnaj Subf		1e-14
2och_A	73	J-domain Of Dnj-12 From Caenorhabditis Elegans Leng		2e-14
1bqz_A	77	J-Domain (Residues 1-77) Of The Escherichia Coli N-		2e-14
2ctp_A	78	Solution Structure Of J-Domain From Human Dnaj Subf		2e-14
2ctr_A	88	Solution Structure Of J-Domain From Human Dnaj Subf		2e-14
2ej7_A	82	Solution Structure Of The Dnaj Domain Of The Human		2e-13
2o37_A	92	J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From S		9e-13
2dmx_A	92	Solution Structure Of The J Domain Of Dnaj Homolog		1e-12
3apo_A	780	Crystal Structure Of Full-Length Erdj5 Length = 780		5e-11
3apq_A	210	Crystal Structure Of J-Trx1 Fragment Of Erdj5 Lengt		9e-11
2qsa_A	109	Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2		5e-08
1nlt_A	248	The Crystal Structure Of Hsp40 Ydj1 Length = 248		9e-08
2y4u_A	450	Crystal Structure Of Human P58(Ipk) In Space Group		7e-07
2y4t_A	450	Crystal Structure Of The Human Co-Chaperone P58(Ipk		7e-07
2q2g_A	180	Crystal Structure Of Dimerization Domain Of Hsp40 F		9e-07
2b26_A	173	The Crystal Structure Of The Protein Complex Of Yea		1e-06
1c3g_A	170	S. Cerevisiae Heat Shock Protein 40 Sis1 Length = 1		6e-06
2yua_A	99	Solution Structure Of The Dnaj Domain From Human Wi		1e-04
2l6l_A	155	Solution Structure Of Human J-Protein Co-Chaperone,		1e-04
2ctq_A	112	Solution Structure Of J-Domain From Human Dnaj Subf		4e-04
1wjz_A	94	Soluiotn Structure Of J-Domain Of Mouse Dnaj Like P		5e-04
2ys8_A	90	Solution Structure Of The Dnaj-Like Domain From Hum		6e-04

>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr Length = 77

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/73 (58%), Positives = 56/73 (76%)
Query: 43  GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKR 102
           G DYY TL + + A+ +EIK +YR+ A +YHPD NK PGAEEKFKEI+ AY+VLSD  KR
Sbjct: 2   GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKR 61
Query: 103 SVYDRFGEAGITG 115
            ++DR+GE G+ G
Sbjct: 62  EIFDRYGEEGLKG 74

>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain From Homo Sapiens Length = 71

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 43/74 (58%), Positives = 54/74 (72%), Gaps = 4/74 (5%)
Query: 37  GMIRAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVL 96
           GM++   T YY  L V+ NAT +E+K +YRKLA KYHPD  K+P   EKFK+IS AYEVL
Sbjct: 1   GMVKE--TTYYDVLGVKPNATQEELKKAYRKLALKYHPD--KNPNEGEKFKQISQAYEVL 56
Query: 97  SDDEKRSVYDRFGE 110
           SD +KR +YD+ GE
Sbjct: 57  SDAKKRELYDKGGE 70

>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The Escherichia Coli Cbpa Length = 73

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/63 (53%), Positives = 51/63 (80%)
Query: 45  DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSV 104
           DYY+ + V+    L+ IKT+YR+LARKYHPD++K P AE +FKE++ A+EVLSD+++R+ 
Sbjct: 6   DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 65
Query: 105 YDR 107
           YD+
Sbjct: 66  YDQ 68

>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj Protein, Mouse Hypothetical Mkiaa0962 Length = 88

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/77 (48%), Positives = 54/77 (70%)
Query: 39  IRAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSD 98
           + A   D Y  L V + A+  +IK +Y+KLAR++HPD NK PGAE++F +IS AYE+LS+
Sbjct: 12  LSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSN 71
Query: 99  DEKRSVYDRFGEAGITG 115
           +EKR+ YD +G    +G
Sbjct: 72  EEKRTNYDHYGSGPSSG 88

>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-104) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 103

Iteration: 1
 Score = 78.6 bits (192), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 37/72 (51%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
Query: 42  AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPG-AEEKFKEISSAYEVLSDDE 100
           A  DYY  L V + A  +EI+ +Y++LA KYHPD N+    AE KFKEI  AYEVL+D +
Sbjct: 1   AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 101 KRSVYDRFGEAG 112
           KR+ YD++G A 
Sbjct: 61  KRAAYDQYGHAA 72

>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A Resolution. Length = 329

Iteration: 1
 Score = 78.6 bits (192), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 33/64 (51%), Positives = 49/64 (76%)
Query: 45  DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSV 104
           DYY+ L V+    L+ IKT+YR+LARKYHPD++K   AE KFK+++ A+EVL D+++R+ 
Sbjct: 29  DYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAE 88
Query: 105 YDRF 108
           YD+ 
Sbjct: 89  YDQL 92

>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A Resolution. Length = 329

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 72/145 (49%), Gaps = 3/145 (2%)
Query: 228 GNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGL 287
           G  E ++ +++ V IP GV +G  ++++G+G         GDL++ +H+         G 
Sbjct: 173 GMIESETPKTLNVKIPAGVVDGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGH 232
Query: 288 NLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGD 347
           NL   + +   EA LG  + V T++    L +P G Q G  ++++  G   + + +  GD
Sbjct: 233 NLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPGSQAGQRLRIKGKG---LVSKTHTGD 289
Query: 348 HLFIVNVLIPKDISDPERALVEEIA 372
              ++ +++P    +  R L +++A
Sbjct: 290 LFAVIKIVMPTKPDEKARELWQQLA 314

>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog, Human Tid1 Protein Length = 79

Iteration: 1
 Score = 78.2 bits (191), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 38/72 (52%), Positives = 51/72 (70%), Gaps = 1/72 (1%)
Query: 45  DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRS 103
           DYY  L V +NA+ +EIK +Y +LA+KYHPD NK  P A+EKF +++ AYEVLSD+ KR 
Sbjct: 8   DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK 67
Query: 104 VYDRFGEAGITG 115
            YD +G    +G
Sbjct: 68  QYDAYGSGPSSG 79

>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a Length = 99

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/83 (46%), Positives = 54/83 (65%), Gaps = 2/83 (2%)
Query: 46  YYSTLNVRQNATLQEIKTSYRKLARKYHPDIN--KSPGAEEKFKEISSAYEVLSDDEKRS 103
           YY  L+V ++A+  +IK +YR+ A ++HPD N      AE+KFKE++ AYEVLSD  KR 
Sbjct: 4   YYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKRE 63
Query: 104 VYDRFGEAGITGEYDGLSNTSQG 126
           +YDR+G  G+TG   G S    G
Sbjct: 64  IYDRYGREGLTGTGTGPSRAEAG 86

>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The Escherichia Coli N-Terminal Fragment (Residues 2-108) Of The Molecular Chaperone Dnaj, 20 Structures Length = 107

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/72 (51%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
Query: 42  AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPG-AEEKFKEISSAYEVLSDDE 100
           A  DYY  L V + A  +EI+ +Y++LA KYHPD N+    AE KFKEI  AYEVL+D +
Sbjct: 1   AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 101 KRSVYDRFGEAG 112
           KR+ YD++G A 
Sbjct: 61  KRAAYDQYGHAA 72

>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C Menber 5 Length = 109

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/80 (46%), Positives = 55/80 (68%), Gaps = 1/80 (1%)
Query: 35  RRGMIRAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDIN-KSPGAEEKFKEISSAY 93
           R+  +  +G   Y  L + +NAT  +IK SYRKLA KYHPD N  +P A +KFKEI++A+
Sbjct: 8   RQRSLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAH 67
Query: 94  EVLSDDEKRSVYDRFGEAGI 113
            +L+D  KR++YD++G  G+
Sbjct: 68  AILTDATKRNIYDKYGSLGL 87

>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans Length = 73

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/67 (53%), Positives = 50/67 (74%), Gaps = 2/67 (2%)
Query: 44  TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRS 103
           T YY  L V+ +A+  E+K +YRK+A K+HPD  K+P   E+FK+IS AYEVLSD++KR 
Sbjct: 8   TGYYDVLGVKPDASDNELKKAYRKMALKFHPD--KNPDGAEQFKQISQAYEVLSDEKKRQ 65
Query: 104 VYDRFGE 110
           +YD+ GE
Sbjct: 66  IYDQGGE 72

>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-78) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 77

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/72 (51%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
Query: 42  AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPG-AEEKFKEISSAYEVLSDDE 100
           A  DYY  L V + A  +EI+ +Y++LA KYHPD N+    AE KFKEI  AYEVL+D +
Sbjct: 1   AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 101 KRSVYDRFGEAG 112
           KR+ YD++G A 
Sbjct: 61  KRAAYDQYGHAA 72

>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 12 Length = 78

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/71 (50%), Positives = 49/71 (69%)
Query: 45  DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSV 104
           DYY  L V + A+ +++K +YR+LA K+HPD N +PGA E FK I +AY VLS+ EKR  
Sbjct: 8   DYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQ 67
Query: 105 YDRFGEAGITG 115
           YD+FG    +G
Sbjct: 68  YDQFGSGPSSG 78

>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 9 Length = 88

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/81 (49%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 46  YYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVY 105
           YY  L V ++A+ ++IK ++ KLA KYHPD NKSP AE KF+EI+ AYE LSD  +R  Y
Sbjct: 9   YYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEY 68
Query: 106 DRFGEAGITGEYDGLSNTSQG 126
           D  G +  T    G S  S G
Sbjct: 69  DTLGHSAFTSG-KGQSGPSSG 88

>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein Hcg3, A Hypothetical Protein Tmp_locus_21 Length = 82

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/74 (48%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
Query: 44  TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDIN--KSPGAEEKFKEISSAYEVLSDDEK 101
            DYY  L+V + A+ + IK +YRKLA K+HPD N      AE +FK+++ AYEVLSD +K
Sbjct: 9   VDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKK 68
Query: 102 RSVYDRFGEAGITG 115
           R +YDR+G    +G
Sbjct: 69  RDIYDRYGSGPSSG 82

>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From Saccharomyces Cerevisiae Length = 92

Iteration: 1
 Score = 71.6 bits (174), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 35/66 (53%), Positives = 44/66 (66%), Gaps = 2/66 (3%)
Query: 44  TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRS 103
           T  Y  L V  +A  QE+K  YRK A KYHPD  K  G  EKFKEIS A+E+L+D +KR 
Sbjct: 8   TKLYDLLGVSPSANEQELKKGYRKAALKYHPD--KPTGDTEKFKEISEAFEILNDPQKRE 65
Query: 104 VYDRFG 109
           +YD++G
Sbjct: 66  IYDQYG 71

>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/68 (52%), Positives = 49/68 (72%), Gaps = 2/68 (2%)
Query: 44  TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDIN--KSPGAEEKFKEISSAYEVLSDDEK 101
            +YY  L V+ +A+ ++IK +YRKLA ++HPD N      AE+KFK +S AYEVLSD +K
Sbjct: 9   ANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKK 68
Query: 102 RSVYDRFG 109
           RS+YDR G
Sbjct: 69  RSLYDRAG 76

>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5 Length = 780

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 53/82 (64%), Gaps = 5/82 (6%)
Query: 45  DYYSTLNVRQNATLQEIKTSYRKLARKYHPDIN-KSPGAEEKFKEISSAYEVLSDDEKRS 103
           ++YS L V + A+ +EI+ +++KLA K HPD N  +P A   F +I+ AYEVL D++ R 
Sbjct: 22  NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 81
Query: 104 VYDRFGEAGIT----GEYDGLS 121
            YD++GE G+     G+Y+  S
Sbjct: 82  KYDKYGEKGLEDNQGGQYESWS 103

>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5 Length = 210

Iteration: 1
 Score = 65.1 bits (157), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 53/82 (64%), Gaps = 5/82 (6%)
Query: 45  DYYSTLNVRQNATLQEIKTSYRKLARKYHPDIN-KSPGAEEKFKEISSAYEVLSDDEKRS 103
           ++YS L V + A+ +EI+ +++KLA K HPD N  +P A   F +I+ AYEVL D++ R 
Sbjct: 3   NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 62
Query: 104 VYDRFGEAGIT----GEYDGLS 121
            YD++GE G+     G+Y+  S
Sbjct: 63  KYDKYGEKGLEDNQGGQYESWS 84

>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2 Precursor From C.Elegans Length = 109

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/67 (43%), Positives = 42/67 (62%), Gaps = 5/67 (7%)
Query: 47  YSTLNV-RQNATLQEIKTSYRKLARKYHPDINKSPG----AEEKFKEISSAYEVLSDDEK 101
           Y  L V R+    Q++  +YR LARK+HPD  K+      AEE+F+ I++AYE L DDE 
Sbjct: 18  YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEA 77
Query: 102 RSVYDRF 108
           ++ YD +
Sbjct: 78  KTNYDYY 84

>pdb|1NLT|A Chain A, The Crystal Structure Of Hsp40 Ydj1 Length = 248

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 88/207 (42%), Gaps = 14/207 (6%)
Query: 169 CGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKII--IDHCRRC 226
           C G G K    ++ C +C G+G    T++    +    + C  C G G II   D C+ C
Sbjct: 44  CEGRGGKKG-AVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSC 102
Query: 227 GGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDG 286
            G      ++ ++V + PG+ +G  +  +GE +      + GD+   +     +   RDG
Sbjct: 103 NGKKVENERKILEVHVEPGMKDGQRIVFKGEAD-QAPDVIPGDVVFIVSERPHKSFKRDG 161
Query: 287 LNLFSKISVDYTEAILGTSMEVETVEG--MKDLRIPSGV-QPGDTVKLQQMGVPDINNPS 343
            +L  +  +D   AI G    +E V G  +K   +P  V  PG    ++  G+P    P 
Sbjct: 162 DDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMP---IPK 218
Query: 344 VRGDHLFIVNVLIPKDISDPERALVEE 370
             G      N++I   I DPE     E
Sbjct: 219 YGG----YGNLIIKFTIKDPENHFTSE 241

>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312 Length = 450

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 48/76 (63%), Gaps = 4/76 (5%)
Query: 35  RRGMIRAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPD----INKSPGAEEKFKEIS 90
           +R + ++   DYY  L V++NA  QEI  +YRKLA ++HPD      +   AE+KF +I+
Sbjct: 373 QRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIA 432
Query: 91  SAYEVLSDDEKRSVYD 106
           +A EVLSD E R  +D
Sbjct: 433 AAKEVLSDPEXRKKFD 448

>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk) Length = 450

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 48/76 (63%), Gaps = 4/76 (5%)
Query: 35  RRGMIRAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPD----INKSPGAEEKFKEIS 90
           +R + ++   DYY  L V++NA  QEI  +YRKLA ++HPD      +   AE+KF +I+
Sbjct: 373 QRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIA 432
Query: 91  SAYEVLSDDEKRSVYD 106
           +A EVLSD E R  +D
Sbjct: 433 AAKEVLSDPEMRKKFD 448

>pdb|2Q2G|A Chain A, Crystal Structure Of Dimerization Domain Of Hsp40 From Cryptosporidium Parvum, Cgd2_1800 Length = 180

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 65/135 (48%), Gaps = 3/135 (2%)
Query: 238 MKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDY 297
           ++V I PG  +G  +   GEG+ +   +  GDL + +         RD  +L  K+++  
Sbjct: 44  VEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDCHLIXKVTIPL 103
Query: 298 TEAILGTSMEVETVEGMKDLRIP--SGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVL 355
             A+ G +  V T++  ++L+IP    V P     +   G P  N P  +GD +   ++ 
Sbjct: 104 VRALTGFTCPVTTLDN-RNLQIPIKEIVNPKTRKIVPNEGXPIKNQPGQKGDLILEFDIC 162
Query: 356 IPKDISDPERALVEE 370
            PK ++  ++ L++E
Sbjct: 163 FPKSLTPEQKKLIKE 177

>pdb|2B26|A Chain A, The Crystal Structure Of The Protein Complex Of Yeast Hsp40 Sis1 And Hsp70 Ssa1 Length = 173

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 66/147 (44%), Gaps = 2/147 (1%)
Query: 225 RCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHR 284
           R G +G    K  + + + PG   G  +  + +G+++ +      L   +         R
Sbjct: 26  RKGPHG-ASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKR 84
Query: 285 DGLNLFSKISVDYTEAILGTSMEVETVEGMK-DLRIPSGVQPGDTVKLQQMGVPDINNPS 343
           DG +L   + + + E++LG S  ++T++G    L     VQP  T      G+P   NPS
Sbjct: 85  DGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPS 144
Query: 344 VRGDHLFIVNVLIPKDISDPERALVEE 370
            RG+ +    V  P  ++D ++  ++E
Sbjct: 145 QRGNLIVKYKVDYPISLNDAQKRAIDE 171

>pdb|1C3G|A Chain A, S. Cerevisiae Heat Shock Protein 40 Sis1 Length = 170

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 65/146 (44%), Gaps = 2/146 (1%)
Query: 225 RCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHR 284
           R G +G    K  + + + PG   G  +  + +G+++ +      L   +         R
Sbjct: 26  RKGPHG-ASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKR 84
Query: 285 DGLNLFSKISVDYTEAILGTSMEVETVEGMK-DLRIPSGVQPGDTVKLQQMGVPDINNPS 343
           DG +L   + + + E++LG S  ++T++G    L     VQP  T      G+P   NPS
Sbjct: 85  DGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPS 144
Query: 344 VRGDHLFIVNVLIPKDISDPERALVE 369
            RG+ +    V  P  ++D ++  ++
Sbjct: 145 QRGNLIVKYKVDYPISLNDAQKRAID 170

>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams- Beuren Syndrome Chromosome Region 18 Protein Length = 99

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/65 (43%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 44  TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKR 102
           T  Y  L V   AT  +IK +Y +    YHPD N  S  A E+F  IS AY VL     R
Sbjct: 17  TALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLR 76
Query: 103 SVYDR 107
             YDR
Sbjct: 77  RKYDR 81

>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4 Length = 155

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Query: 45  DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS--PGAE-----EKFKEISSAYEVLS 97
           D+YS L    +A + ++K  Y+KL   YHPD   +  P        +KF EI  A+++L 
Sbjct: 11  DWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILG 70
Query: 98  DDEKRSVYD 106
           ++E +  YD
Sbjct: 71  NEETKREYD 79

>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C Menber 12 Length = 112

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 45  DYYSTLNVRQNATLQEIKTSYRKLARKYHPDIN-KSPGAEEKFKEISSAYEVLSDDEKRS 103
           DYY+ L   + +++++I   ++  A + HPD + ++P A E F+++  A E+L+++E R+
Sbjct: 21  DYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRA 80
Query: 104 VYDRF 108
            YD +
Sbjct: 81  RYDHW 85

>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein Length = 94

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 29  GNNRSHRRGMIRAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS--PGAE--- 83
           G++ S    + +    D+YS L    +A + ++K  Y+KL   YHPD   +  P      
Sbjct: 1   GSSGSSGMALEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEE 60
Query: 84  --EKFKEISSAYEVLSDDEKRSVYD 106
             +KF EI  A+++L ++E +  YD
Sbjct: 61  CMQKFIEIDQAWKILGNEETKKKYD 85

>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human Ras- Associated Protein Rap1 Length = 90

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 45 DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVL 96
          D +  L V+  A+  E+  +YRKLA   HPD   +PG+E+ FK + +A   L
Sbjct: 28 DSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTAL 79

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	485
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	4e-82
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	8e-45
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	4e-43
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	5e-42
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	1e-40
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	1e-36
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	1e-36
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	2e-36
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	2e-36
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	2e-36
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	3e-36
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	3e-36
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	8e-36
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	3e-35
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	5e-35
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	8e-35
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	5e-34
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	8e-34
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	1e-33
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	1e-32
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	1e-31
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	8e-29
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	9e-29
2q2g_A	180	HSP40 protein, heat shock 40 kDa protein, putative	2e-27
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	2e-27
1c3g_A	170	Heat shock protein 40; beta sheets, short helices,	4e-25
3agx_A	181	DNAJ homolog subfamily B member 1; chaperone; 1.85	9e-24
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	1e-23
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-22
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	4e-19
3i38_A	109	Putative chaperone DNAJ; structural genomics, prot	1e-17
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	1e-16
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	3e-16
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	3e-16
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	2e-15
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	2e-14
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	5e-14
2guz_A	71	Mitochondrial import inner membrane translocase su	5e-12
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	1e-11
1xao_A	121	YDJ1, mitochondrial protein import protein MAS5; b	8e-11
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	3e-07
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329

 Score =  256 bits (657), Expect = 4e-82
 Identities = 75/334 (22%), Positives = 138/334 (41%), Gaps = 44/334 (13%)

Query: 45  DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSV 104
           DYY+ L V+    L+ IKT+YR+LARKYHPD++K   AE KFK+++ A+EVL D+++R+ 
Sbjct: 29  DYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAE 88

Query: 105 YDRFGEAGITGEYDGLSNTSQGVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFG 164
           YD+  +      +     T +     + +   F     +FG                  G
Sbjct: 89  YDQLWQHRNDPGFGRQRQTHEQSYSQQDFDDIFSS---MFGQQAHQRR-----RQHAARG 140

Query: 165 LDIRCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKI-IIDHC 223
            D+                                          +       I      
Sbjct: 141 HDLEIEVAV-------------------------FL-------EETLAEQTRTISYNLPV 168

Query: 224 RRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIH 283
               G  E ++ +++ V IP GV +G  ++++G+G         GDL++ +H+       
Sbjct: 169 YNVFGMIESETPKTLNVKIPAGVVDGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFD 228

Query: 284 RDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPS 343
             G NL   + +   EA LG  + V T++    L +P G Q G  ++++  G+    + +
Sbjct: 229 IVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPGSQAGQRLRIKGKGLV---SKT 285

Query: 344 VRGDHLFIVNVLIPKDISDPERALVEEIAFLKSP 377
             GD   ++ +++P    +  R L +++A  ++ 
Sbjct: 286 HTGDLFAVIKIVMPTKPDEKARELWQQLAAAEAS 319

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 Length = 248

 Score =  156 bits (397), Expect = 8e-45
 Identities = 50/207 (24%), Positives = 87/207 (42%), Gaps = 10/207 (4%)

Query: 169 CGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIII--DHCRRC 226
           C G G K    ++ C +C G+G    T++    +    + C  C G G II   D C+ C
Sbjct: 44  CEGRGGKK-GAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSC 102

Query: 227 GGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDG 286
            G      ++ ++V + PG+ +G  +  +GE +      + GD+   +     +   RDG
Sbjct: 103 NGKKVENERKILEVHVEPGMKDGQRIVFKGEAD-QAPDVIPGDVVFIVSERPHKSFKRDG 161

Query: 287 LNLFSKISVDYTEAILGTSMEVETVEGMK-DLRIPSG--VQPGDTVKLQQMGVPDINNPS 343
            +L  +  +D   AI G    +E V G    + I  G  + PG    ++  G+P      
Sbjct: 162 DDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGG 221

Query: 344 VRGDHLFI-VNVLIPKDISDPERALVE 369
             G+ L I   +  P++    E  L +
Sbjct: 222 -YGN-LIIKFTIKDPENHFTSEENLKK 246

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88

 Score =  146 bits (370), Expect = 4e-43
 Identities = 38/87 (43%), Positives = 56/87 (64%)

Query: 29  GNNRSHRRGMIRAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKE 88
            +  S     + A   D Y  L V + A+  +IK +Y+KLAR++HPD NK PGAE++F +
Sbjct: 2   SSGSSGILQSLSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQ 61

Query: 89  ISSAYEVLSDDEKRSVYDRFGEAGITG 115
           IS AYE+LS++EKR+ YD +G    +G
Sbjct: 62  ISKAYEILSNEEKRTNYDHYGSGPSSG 88

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77

 Score =  143 bits (362), Expect = 5e-42
 Identities = 43/73 (58%), Positives = 56/73 (76%)

Query: 43  GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKR 102
           G DYY TL + + A+ +EIK +YR+ A +YHPD NK PGAEEKFKEI+ AY+VLSD  KR
Sbjct: 2   GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKR 61

Query: 103 SVYDRFGEAGITG 115
            ++DR+GE G+ G
Sbjct: 62  EIFDRYGEEGLKG 74

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score =  139 bits (352), Expect = 1e-40
 Identities = 36/75 (48%), Positives = 50/75 (66%)

Query: 41  AAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDE 100
            +  DYY  L V + A+ +++K +YR+LA K+HPD N +PGA E FK I +AY VLS+ E
Sbjct: 4   GSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPE 63

Query: 101 KRSVYDRFGEAGITG 115
           KR  YD+FG    +G
Sbjct: 64  KRKQYDQFGSGPSSG 78

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score =  129 bits (326), Expect = 1e-36
 Identities = 40/82 (48%), Positives = 51/82 (62%), Gaps = 1/82 (1%)

Query: 45  DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSV 104
            YY  L V ++A+ ++IK ++ KLA KYHPD NKSP AE KF+EI+ AYE LSD  +R  
Sbjct: 8   SYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKE 67

Query: 105 YDRFGEAGITGEYDGLSNTSQG 126
           YD  G +  T    G S  S G
Sbjct: 68  YDTLGHSAFTSGK-GQSGPSSG 88

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109

 Score =  129 bits (327), Expect = 1e-36
 Identities = 39/89 (43%), Positives = 57/89 (64%), Gaps = 3/89 (3%)

Query: 28  SGNNRSHRRGMIRAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKF 86
           SG++   R      +G   Y  L + +NAT  +IK SYRKLA KYHPD N  +P A +KF
Sbjct: 3   SGSSGRQRSLS--TSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKF 60

Query: 87  KEISSAYEVLSDDEKRSVYDRFGEAGITG 115
           KEI++A+ +L+D  KR++YD++G  G+  
Sbjct: 61  KEINNAHAILTDATKRNIYDKYGSLGLYV 89

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score =  128 bits (324), Expect = 2e-36
 Identities = 38/76 (50%), Positives = 52/76 (68%), Gaps = 1/76 (1%)

Query: 41  AAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDD 99
            +  DYY  L V +NA+ +EIK +Y +LA+KYHPD NK  P A+EKF +++ AYEVLSD+
Sbjct: 4   GSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDE 63

Query: 100 EKRSVYDRFGEAGITG 115
            KR  YD +G    +G
Sbjct: 64  VKRKQYDAYGSGPSSG 79

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73

 Score =  128 bits (323), Expect = 2e-36
 Identities = 36/70 (51%), Positives = 49/70 (70%), Gaps = 2/70 (2%)

Query: 41  AAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDE 100
              T YY  L V+ +A+  E+K +YRK+A K+HPD N  P   E+FK+IS AYEVLSD++
Sbjct: 5   VKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKN--PDGAEQFKQISQAYEVLSDEK 62

Query: 101 KRSVYDRFGE 110
           KR +YD+ GE
Sbjct: 63  KRQIYDQGGE 72

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score =  133 bits (335), Expect = 2e-36
 Identities = 38/118 (32%), Positives = 58/118 (49%), Gaps = 7/118 (5%)

Query: 45  DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRS 103
           ++YS L V + A+ +EI+ +++KLA K HPD N  +P A   F +I+ AYEVL D++ R 
Sbjct: 3   NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 62

Query: 104 VYDRFGEAGITGEYDGLSNTSQGVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKG 161
            YD++GE G+     G        + +  Y   FG  D     +           N G
Sbjct: 63  KYDKYGEKGLEDNQGG------QYESWSYYRYDFGIYDDDPEIITLERREFDAAVNSG 114

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82

 Score =  127 bits (322), Expect = 3e-36
 Identities = 36/73 (49%), Positives = 50/73 (68%), Gaps = 2/73 (2%)

Query: 45  DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK--SPGAEEKFKEISSAYEVLSDDEKR 102
           DYY  L+V + A+ + IK +YRKLA K+HPD N      AE +FK+++ AYEVLSD +KR
Sbjct: 10  DYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKR 69

Query: 103 SVYDRFGEAGITG 115
            +YDR+G    +G
Sbjct: 70  DIYDRYGSGPSSG 82

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99

 Score =  128 bits (323), Expect = 3e-36
 Identities = 39/84 (46%), Positives = 54/84 (64%), Gaps = 2/84 (2%)

Query: 45  DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSP--GAEEKFKEISSAYEVLSDDEKR 102
            YY  L+V ++A+  +IK +YR+ A ++HPD N      AE+KFKE++ AYEVLSD  KR
Sbjct: 3   SYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKR 62

Query: 103 SVYDRFGEAGITGEYDGLSNTSQG 126
            +YDR+G  G+TG   G S    G
Sbjct: 63  EIYDRYGREGLTGTGTGPSRAEAG 86

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112

 Score =  127 bits (322), Expect = 8e-36
 Identities = 21/87 (24%), Positives = 47/87 (54%), Gaps = 1/87 (1%)

Query: 45  DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRS 103
           DYY+ L   + +++++I   ++  A + HPD +  +P A E F+++  A E+L+++E R+
Sbjct: 21  DYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRA 80

Query: 104 VYDRFGEAGITGEYDGLSNTSQGVDPF 130
            YD +  + ++  +      +  V   
Sbjct: 81  RYDHWRRSQMSMPFQQWEALNDSVKTS 107

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92

 Score =  125 bits (316), Expect = 3e-35
 Identities = 43/112 (38%), Positives = 52/112 (46%), Gaps = 24/112 (21%)

Query: 41  AAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDE 100
              T  Y  L V  +A  QE+K  YRK A KYHPD  K  G  EKFKEIS A+E+L+D +
Sbjct: 5   VKETKLYDLLGVSPSANEQELKKGYRKAALKYHPD--KPTGDTEKFKEISEAFEILNDPQ 62

Query: 101 KRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYSAFFGGSDGLFGGVGEAGG 152
           KR +YD++G                            GG     GG G AGG
Sbjct: 63  KREIYDQYGLEAARS----------------------GGPSFGPGGPGGAGG 92

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score =  125 bits (315), Expect = 5e-35
 Identities = 31/89 (34%), Positives = 38/89 (42%), Gaps = 1/89 (1%)

Query: 32  RSHRRGMIRAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEIS 90
            S  +G    + T  Y  L V   AT  +IK +Y +    YHPD N  S  A E+F  IS
Sbjct: 5   SSGSQGDCSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRIS 64

Query: 91  SAYEVLSDDEKRSVYDRFGEAGITGEYDG 119
            AY VL     R  YDR   +       G
Sbjct: 65  QAYVVLGSATLRRKYDRGLLSDEDLRGPG 93

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92

 Score =  124 bits (313), Expect = 8e-35
 Identities = 36/73 (49%), Positives = 49/73 (67%), Gaps = 2/73 (2%)

Query: 45  DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK--SPGAEEKFKEISSAYEVLSDDEKR 102
           +YY  L V+ +A+ ++IK +YRKLA ++HPD N      AE+KFK +S AYEVLSD +KR
Sbjct: 10  NYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKR 69

Query: 103 SVYDRFGEAGITG 115
           S+YDR G      
Sbjct: 70  SLYDRAGCDSWRA 82

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94

 Score =  122 bits (308), Expect = 5e-34
 Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 7/94 (7%)

Query: 29  GNNRSHRRGMIRAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-------SPG 81
           G++ S    + +    D+YS L    +A + ++K  Y+KL   YHPD             
Sbjct: 1   GSSGSSGMALEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEE 60

Query: 82  AEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITG 115
             +KF EI  A+++L ++E +  YD       +G
Sbjct: 61  CMQKFIEIDQAWKILGNEETKKKYDLQRSGPSSG 94

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103

 Score =  121 bits (307), Expect = 8e-34
 Identities = 44/103 (42%), Positives = 60/103 (58%), Gaps = 4/103 (3%)

Query: 45  DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRS 103
           DYY  L V + A  +EI+ +Y++LA KYHPD N+    AE KFKEI  AYEVL+D +KR+
Sbjct: 4   DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63

Query: 104 VYDRFGEAGITGEYDGLSNTSQGVDPFELYSAFFGGSDGLFGG 146
            YD++G A       G      G D  +++   FG    +FGG
Sbjct: 64  AYDQYGHAAFEQGGMGGGGFGGGADFSDIFGDVFG---DIFGG 103

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109

 Score =  121 bits (306), Expect = 1e-33
 Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 5/73 (6%)

Query: 45  DYYSTLNVRQNA-TLQEIKTSYRKLARKYHPDINKSP----GAEEKFKEISSAYEVLSDD 99
           + Y  L V +     Q++  +YR LARK+HPD  K+      AEE+F+ I++AYE L DD
Sbjct: 16  NCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDD 75

Query: 100 EKRSVYDRFGEAG 112
           E ++ YD + +  
Sbjct: 76  EAKTNYDYYLDHP 88

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score =  118 bits (297), Expect = 1e-32
 Identities = 21/62 (33%), Positives = 32/62 (51%)

Query: 45  DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSV 104
           D +  L V+  A+  E+  +YRKLA   HPD   +PG+E+ FK + +A   L  + K   
Sbjct: 28  DSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGP 87

Query: 105 YD 106
             
Sbjct: 88  SS 89

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155

 Score =  118 bits (296), Expect = 1e-31
 Identities = 34/154 (22%), Positives = 55/154 (35%), Gaps = 37/154 (24%)

Query: 45  DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPG-------AEEKFKEISSAYEVLS 97
           D+YS L    +A + ++K  Y+KL   YHPD   +           +KF EI  A+++L 
Sbjct: 11  DWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILG 70

Query: 98  DDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYSAFFGGSDGLFGGVGEAGGINFNF 157
           ++E +  YD                                 + G          +++N 
Sbjct: 71  NEETKREYDLQRCED------------------------DLRNVGPVDAQVYLEEMSWNE 106

Query: 158 GNKGNFGLDIRCGGT-----GAKSSNCIQSCKAC 186
           G+  +F L  RCGG             + SC  C
Sbjct: 107 GD-HSFYLSCRCGGKYSVSKDEAEEVSLISCDTC 139

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114

 Score =  108 bits (272), Expect = 8e-29
 Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 11/109 (10%)

Query: 39  IRAAGTDYYSTLNVRQNA--TLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVL 96
           +R         L + ++A   +  ++ +Y K  +++HPD     G EEK K++++ Y+ +
Sbjct: 3   MREESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKG---GDEEKMKKMNTLYKKM 59

Query: 97  SDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYSAFFGGSDGLFG 145
            D  K +    FG      E       + G D +E +   F   + LF 
Sbjct: 60  EDGVKYAHQPDFGGFWDATE-----IPTYGTDEWEQWWNAFNEEN-LFC 102

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88

 Score =  107 bits (270), Expect = 9e-29
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 5/75 (6%)

Query: 45  DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSP--GAEEKFKEISSAYEVLSDDEKR 102
           +  S +         E K   R+L  K+HPD N      A E FK + +    L   EK+
Sbjct: 17  EVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRL---EKQ 73

Query: 103 SVYDRFGEAGITGEY 117
           +  D+  +      +
Sbjct: 74  AFLDQNADRASRRTF 88

>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II} Length = 180

 Score =  107 bits (269), Expect = 2e-27
 Identities = 39/163 (23%), Positives = 74/163 (45%), Gaps = 5/163 (3%)

Query: 212 CGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLF 271
             G  K I    +R   +     +  ++V I PG  +G  +   GEG+ +   +  GDL 
Sbjct: 18  YLGKRKKIKVTRKRFIEHKVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLV 77

Query: 272 VALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSG--VQPGDTV 329
           + +         RD  +L  K+++    A+ G +  V T++  ++L+IP    V P    
Sbjct: 78  LIIQTKTHPRFTRDDCHLIMKVTIPLVRALTGFTCPVTTLDN-RNLQIPIKEIVNPKTRK 136

Query: 330 KLQQMGVPDINNPSVRGDHLFI-VNVLIPKDISDPERALVEEI 371
            +   G+P  N P  +GD L +  ++  PK ++  ++ L++E 
Sbjct: 137 IVPNEGMPIKNQPGQKGD-LILEFDICFPKSLTPEQKKLIKEA 178

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174

 Score =  107 bits (268), Expect = 2e-27
 Identities = 20/97 (20%), Positives = 40/97 (41%), Gaps = 5/97 (5%)

Query: 36  RGMIRAAGTDYYSTLNVRQNA--TLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAY 93
           + + R         L + ++A   +  ++ +Y K  +++HPD     G EEK K++++ Y
Sbjct: 3   KVLNREESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKG---GDEEKMKKMNTLY 59

Query: 94  EVLSDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPF 130
           + + D  K +    FG      E    S        +
Sbjct: 60  KKMEDGVKYAHQPDFGGFWDATEVFASSLNPGVDAIY 96

>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A Length = 170

 Score =  100 bits (252), Expect = 4e-25
 Identities = 33/146 (22%), Positives = 63/146 (43%), Gaps = 3/146 (2%)

Query: 226 CGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRD 285
             G      K  + + + PG   G  +  + +G+++ +      L   +         RD
Sbjct: 26  RKGPHGASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRD 85

Query: 286 GLNLFSKISVDYTEAILGTSMEVETVEGMK-DLRIPSGVQPGDTVKLQQMGVPDINNPSV 344
           G +L   + + + E++LG S  ++T++G    L     VQP  T      G+P   NPS 
Sbjct: 86  GDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQ 145

Query: 345 RGDHLFI-VNVLIPKDISDPERALVE 369
           RG+ L +   V  P  ++D ++  ++
Sbjct: 146 RGN-LIVKYKVDYPISLNDAQKRAID 170

>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A Length = 181

 Score = 96.9 bits (242), Expect = 9e-24
 Identities = 36/166 (21%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 209 CSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAG 268
            S C    KI         G       + + + +  G   G  +    EG+     ++  
Sbjct: 17  YSGCTKKMKIS-HKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGD-QTSNNIPA 74

Query: 269 DLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSG--VQPG 326
           D+   L         RDG ++     +   EA+ G ++ V T++G + + +     ++PG
Sbjct: 75  DIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDG-RTIPVVFKDVIRPG 133

Query: 327 DTVKLQQMGVPDINNPSVRGDHLFI-VNVLIPKDISDPERALVEEI 371
              K+   G+P    P  RGD L I   V+ P+ I    R ++E++
Sbjct: 134 MRRKVPGEGLPLPKTPEKRGD-LIIEFEVIFPERIPQTSRTVLEQV 178

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score =  103 bits (258), Expect = 1e-23
 Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 6/130 (4%)

Query: 38  MIRAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDIN-KSPGAEEKFKEISSAYEVL 96
           +      ++YS L V + A+ +EI+ +++KLA K HPD N  +P A   F +I+ AYEVL
Sbjct: 15  IEGRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVL 74

Query: 97  SDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPF-----ELYSAFFGGSDGLFGGVGEAG 151
            D++ R  YD++GE G+     G   +            +               V    
Sbjct: 75  KDEDLRKKYDKYGEKGLEDNQGGQYESWSYYRYDFGIYDDDPEIITLERREFDAAVNSGE 134

Query: 152 GINFNFGNKG 161
               NF + G
Sbjct: 135 LWFVNFYSPG 144

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 98.2 bits (245), Expect = 2e-22
 Identities = 33/76 (43%), Positives = 48/76 (63%), Gaps = 4/76 (5%)

Query: 36  RGMIRAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPG----AEEKFKEISS 91
           R + ++   DYY  L V++NA  QEI  +YRKLA ++HPD  ++      AE+KF +I++
Sbjct: 374 RLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAA 433

Query: 92  AYEVLSDDEKRSVYDR 107
           A EVLSD E R  +D 
Sbjct: 434 AKEVLSDPEMRKKFDD 449

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181

 Score = 83.9 bits (207), Expect = 4e-19
 Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 9/100 (9%)

Query: 44  TDYYSTLNVRQNATL-------QEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVL 96
           + +Y          L         ++  YR+L  ++HPD   +    E+   ++ AY  L
Sbjct: 11  STFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPD--MAQQGSEQSSTLNQAYHTL 68

Query: 97  SDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYSAF 136
            D  +RS Y       I    +  SN     DP  L    
Sbjct: 69  KDPLRRSQYMLKLLRNIDLTQEQTSNEVTTSDPQLLLKVL 108

>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp} Length = 109

 Score = 77.2 bits (191), Expect = 1e-17
 Identities = 21/89 (23%), Positives = 43/89 (48%), Gaps = 3/89 (3%)

Query: 284 RDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPS 343
             G NL   + +   EA LG  + V T++    L +P G Q G  ++++  G+    + +
Sbjct: 9   IVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPGSQAGQRLRIKGKGLV---SKT 65

Query: 344 VRGDHLFIVNVLIPKDISDPERALVEEIA 372
             GD   ++ +++P    +  R L +++A
Sbjct: 66  HTGDLFAVIKIVMPTKPDEKARELWQQLA 94

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171

 Score = 76.9 bits (189), Expect = 1e-16
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 8/71 (11%)

Query: 45  DYYSTLNVRQNATL--QEIKTSYRKLARKYHPDINKSPGAEEK------FKEISSAYEVL 96
           DY++   +     L  Q +   ++ L R+YHPD   S    E+         I+ A++ L
Sbjct: 2   DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61

Query: 97  SDDEKRSVYDR 107
                R+ Y  
Sbjct: 62  RHPLMRAEYLL 72

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 104

 Score = 73.4 bits (181), Expect = 3e-16
 Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 4/73 (5%)

Query: 168 RCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCG 227
           RC G G +    +Q C  C G G          G     STC +CGG G III  C  C 
Sbjct: 33  RCNGKGNEPGTKVQHCHYCGGSGME----TINTGPFVMRSTCRRCGGRGSIIISPCVVCR 88

Query: 228 GNGEVQSKRSMKV 240
           G G+ + K+    
Sbjct: 89  GAGQAKQKKRSGP 101

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79

 Score = 70.0 bits (171), Expect = 2e-15
 Identities = 12/76 (15%), Positives = 28/76 (36%), Gaps = 5/76 (6%)

Query: 36  RGMIRAAGTDYYSTLNVRQNA--TLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAY 93
           R + RA        L + +        ++ +Y++ +   HPD     G+    +E++S +
Sbjct: 3   RVLSRADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKG---GSHALMQELNSLW 59

Query: 94  EVLSDDEKRSVYDRFG 109
                +      +  G
Sbjct: 60  GTFKTEVYNLRMNLGG 75

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182

 Score = 70.6 bits (172), Expect = 2e-14
 Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 4/67 (5%)

Query: 43  GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPG----AEEKFKEISSAYEVLSD 98
           G   +  + +    T +++K  YRK     HPD          A+  F E++ A+    +
Sbjct: 116 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFEN 175

Query: 99  DEKRSVY 105
             ++ +Y
Sbjct: 176 QGQKPLY 182

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1 Length = 79

 Score = 66.1 bits (162), Expect = 5e-14
 Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 169 CGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGG 228
           C G+GAK     Q+C  C G G V   Q    G  +   TC  C G G +I D C +C G
Sbjct: 17  CHGSGAKPGTQPQTCPTCHGSGQVQMRQ----GFFAVQQTCPHCQGRGTLIKDPCNKCHG 72

Query: 229 NGEVQ 233
           +G V+
Sbjct: 73  HGRVE 77

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71

 Score = 60.4 bits (147), Expect = 5e-12
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 45  DYYSTLNVRQNA-TLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKR 102
           +    LN+ +N  T +++K  +RK+    HPD   SP       +I+ A + L      
Sbjct: 15  EALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSP---FLATKINEAKDFLEKRGIS 70

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Length = 207

 Score = 62.8 bits (152), Expect = 1e-11
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 8/70 (11%)

Query: 45  DYYSTLNVRQNATL--QEIKTSYRKLARKYHPDINKSPGAEEK------FKEISSAYEVL 96
           DY+S ++  ++  +   +++  Y++L R  HPD        EK         ++ AY+ L
Sbjct: 44  DYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTL 103

Query: 97  SDDEKRSVYD 106
                R +Y 
Sbjct: 104 LAPLSRGLYL 113

>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae} Length = 121

 Score = 58.4 bits (142), Expect = 8e-11
 Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 10/96 (10%)

Query: 283 HRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSG----VQPGDTVKLQQMGVPD 338
            RDG +L  +  +D   AI G    +E V G   L++       + PG    ++  G+P 
Sbjct: 3   KRDGDDLVYEAEIDLLTAIAGGEFALEHVSG-DWLKVGIVPGEVIAPGMRKVIEGKGMPI 61

Query: 339 INNPSVRGDHLFI-VNVLIPKD--ISDPERALVEEI 371
                  G+ L I   +  P++   S+     +EEI
Sbjct: 62  PKYGG-YGN-LIIKFTIKFPENHFTSEENLKKLEEI 95

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Length = 92

 Score = 47.3 bits (112), Expect = 3e-07
 Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 4/60 (6%)

Query: 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPG----AEEKFKEISSAYEVLSD 98
          G   +  + +    T +++K  YRK     HP           A+  F E++ A+    +
Sbjct: 32 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Length = 106

 Score = 47.7 bits (113), Expect = 3e-07
 Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 6/67 (8%)

Query: 47  YSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEIS-SAYEVLSDDEKRSVY 105
           +  + +        ++ SY++     HPD  +  GA    K ++   +E+L +      +
Sbjct: 43  WKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQE-----AW 97

Query: 106 DRFGEAG 112
           D F   G
Sbjct: 98  DHFNTLG 104

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.8 bits (123), Expect = 4e-07
 Identities = 58/443 (13%), Positives = 121/443 (27%), Gaps = 133/443 (30%)

Query: 60  EIKTSYRKLARKYHPDINKS---PGAEEKFKEISSAYEV-----LSDDEKR--------- 102
           E +  Y+ +   +      +      ++  K I S  E+       D             
Sbjct: 13  EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLL 72

Query: 103 ----SVYDRFGEAGITGEYDGLSNT--SQGVDPFELYSAFFGGSDGLFGGVGEAGGINFN 156
                +  +F E  +   Y  L +   ++   P  +   +    D L+          F 
Sbjct: 73  SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV-----F- 126

Query: 157 FGNKGN-------------------------FGLDIRCGGTGAKSSNCIQSCKACWGRGG 191
              K N                          G+     G+G K+   +  C +      
Sbjct: 127 --AKYNVSRLQPYLKLRQALLELRPAKNVLIDGV----LGSG-KTWVALDVCLS------ 173

Query: 192 VLKTQRT-PFGL--ISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSN 248
             K Q    F +  ++ +  C+      +++     +   N   +S  S          +
Sbjct: 174 -YKVQCKMDFKIFWLN-LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN---IKLRIH 228

Query: 249 GATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISV-----DYTEAILG 303
               ++R      + +     L V L+V   +    +  NL  KI +       T+ +  
Sbjct: 229 SIQAELR---RLLKSKPYENCLLVLLNVQNAKAW--NAFNLSCKILLTTRFKQVTDFLSA 283

Query: 304 TSMEVETVE-------------------GMKDLRIPSGVQPGDTVKLQQMGVPDINNPS- 343
            +    +++                     +   +P  V   +  +L  +     +  + 
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343

Query: 344 ------VRGDHL--FI---VNVLIPKDISDPERALVEEIA-FLKS---PGK-----WHSV 383
                 V  D L   I   +NVL P +     R + + ++ F  S   P       W  V
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEY----RKMFDRLSVFPPSAHIPTILLSLIWFDV 399

Query: 384 STNSTEAA----QRKSAKVRDWK 402
             +          + S   +  K
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPK 422

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	485
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	100.0
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	100.0
3agx_A	181	DNAJ homolog subfamily B member 1; chaperone; 1.85	100.0
2q2g_A	180	HSP40 protein, heat shock 40 kDa protein, putative	100.0
1c3g_A	170	Heat shock protein 40; beta sheets, short helices,	100.0
3i38_A	109	Putative chaperone DNAJ; structural genomics, prot	99.93
1xao_A	121	YDJ1, mitochondrial protein import protein MAS5; b	99.89
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.89
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.87
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	99.85
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	99.84
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.84
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.84
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.83
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	99.83
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.83
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.83
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.82
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	99.81
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.81
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	99.81
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	99.78
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.78
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.76
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.75
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.7
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	99.7
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	99.69
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.68
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	99.67
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	99.65
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.63
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	99.62
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	99.62
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	99.61
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	99.6
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	99.59
2guz_A	71	Mitochondrial import inner membrane translocase su	99.57
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	99.56
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	99.27
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	99.09
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.02
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	98.97
2q2g_A	180	HSP40 protein, heat shock 40 kDa protein, putative	98.77
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	98.76
1c3g_A	170	Heat shock protein 40; beta sheets, short helices,	98.75
3agx_A	181	DNAJ homolog subfamily B member 1; chaperone; 1.85	98.71
2guz_B	65	Mitochondrial import inner membrane translocase su	98.49
3i38_A	109	Putative chaperone DNAJ; structural genomics, prot	97.59
1xao_A	121	YDJ1, mitochondrial protein import protein MAS5; b	97.5
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	97.41
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	97.4
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	96.61
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	96.61
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	95.64
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	95.24
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	90.24
3pmq_A	669	Decaheme cytochrome C MTRF; greek KEY, C type cyto	81.35

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=100.00  E-value=3.1e-61  Score=491.53  Aligned_cols=285  Identities=26%  Similarity=0.456  Sum_probs=147.4

Q ss_pred             cCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhhhccccccchhccccccCcCcccCCC-
Q 011450           42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGL-  120 (485)
Q Consensus        42 ~~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~~~~~~~-  120 (485)
                      ..+|||++|||+++||.+|||+|||+||++||||+|+++.|+++|++|++||++|+||++|+.||+|+.....++++++ 
T Consensus        26 ~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~~~~~~~~  105 (329)
T 3lz8_A           26 ELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQHRNDPGFGRQR  105 (329)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhcccchhhccccCCCccccc
Confidence            3489999999999999999999999999999999998888999999999999999999999999999544321111100 


Q ss_pred             ---CCCCCCCCchhhhhhhcCCCCCCCCCCCCCCCcccccCCCCCcccccccCCCCCCCCCCcccCCCCCCCCeeeeeee
Q 011450          121 ---SNTSQGVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRCGGTGAKSSNCIQSCKACWGRGGVLKTQR  197 (485)
Q Consensus       121 ---~~~~~~~dp~d~f~~fFgg~~g~fg~~g~~~g~~~~~~~~~~~~~di~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~  197 (485)
                         +.+..+.++.|+|++|||+.+  .++     +     ...+.++.|+.                        +.   
T Consensus       106 ~~~~~~f~~~~f~diF~~~Fg~~g--~~~-----~-----~~~~~~g~Dl~------------------------~~---  146 (329)
T 3lz8_A          106 QTHEQSYSQQDFDDIFSSMFGQQA--HQR-----R-----RQHAARGHDLE------------------------IE---  146 (329)
T ss_dssp             -------------------------------------------CCCCCCEE------------------------EE---
T ss_pred             ccccCCcCCCchhhhhHhhhcCcC--CCC-----C-----CCCcCCCCCEE------------------------EE---
Confidence               001012245678888885420  000     0     00011222222                        00   


Q ss_pred             cCCceeeeEeecccCCCCcEEEeecccccCCCcee--eeceEEEEEcCCCCCCCCEEEEccccCCCCCCCCCccEEEEEE
Q 011450          198 TPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEV--QSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALH  275 (485)
Q Consensus       198 ~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v--~~~k~l~V~IP~Gv~dG~~Ir~~G~Gd~~~~g~~~GDL~v~I~  275 (485)
                            ..++....+.|..+.+...+..|.+.|.+  .+.++++|+||||+++|++|+|+|+|+++..++.+|||||+|+
T Consensus       147 ------l~vsleea~~G~~k~i~i~~~v~~g~G~v~~~~~~~l~V~IP~Gv~~G~~Irl~G~G~~g~~gg~~GDL~v~I~  220 (329)
T 3lz8_A          147 ------VAVFLEETLAEQTRTISYNLPVYNVFGMIESETPKTLNVKIPAGVVDGQRIRLKGQGTPGENGGPNGDLWLVIH  220 (329)
T ss_dssp             ------ECCCTTGGGSCEEEEEEEEEEECCSCC-CCEEEEEEEEEEECTTCCTTCEEEESSCSCCC---CCCCCEEEEEC
T ss_pred             ------EecchhhhhhccceEEEEEEEeecCCeEEEEecceEEEEeCCCCCCCCCEEEEcccccCCCCCCCCCcEEEEEE
Confidence                  01234455666666666555555555644  3468999999999999999999999999888899999999999


Q ss_pred             eeccccccccccceEEEEEecchhhccCceEEEEccCCeEEEEeCCCCCCCCEEEEcCCCCCCCCCCCCCccEEEEEEEE
Q 011450          276 VDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVL  355 (485)
Q Consensus       276 v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~irl~g~G~P~~~~~~~rGDL~V~~~V~  355 (485)
                      |+||+.|+|+|+||+++++|+|+||+||++++|+||||++.|+||+|+++|++++|+|+|||..   +.+|||||+|+|+
T Consensus       221 v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~VptLdG~v~l~ip~gt~~g~~~rl~G~GmP~~---~~rGDL~v~~~V~  297 (329)
T 3lz8_A          221 IAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPGSQAGQRLRIKGKGLVSK---THTGDLFAVIKIV  297 (329)
T ss_dssp             CCCCSSCEEETTEEEEEEEECHHHHHHCEEEEECCSSSCEEEEECTTCCTTCEEEETTCSCBCS---SCBCCEEEEEEEC
T ss_pred             EecCCccEEcCCcEEEEEECCHHHHcCCCeEEEECCCCCEEEEECCCCCCCCEEEEcCCCCCCC---CCCCCEEEEEEEE
Confidence            9999999999999999999999999999999999999999999999999999999999999975   3699999999999


Q ss_pred             cCCCCChhHHHHHHHHHhh
Q 011450          356 IPKDISDPERALVEEIAFL  374 (485)
Q Consensus       356 ~P~~ls~~q~~ll~~l~~~  374 (485)
                      +|+.|+++|+++|++|+++
T Consensus       298 ~P~~l~~~q~~~l~~~~~~  316 (329)
T 3lz8_A          298 MPTKPDEKARELWQQLAAA  316 (329)
T ss_dssp             CCSSCCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHhh
Confidence            9999999999999999983

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=100.00  E-value=6.3e-49  Score=386.59  Aligned_cols=201  Identities=25%  Similarity=0.498  Sum_probs=176.1

Q ss_pred             cccccCCCCCCCCCCcccCCCCCCCCeeeeeeecCCcee-eeEeecccCCCCcEEE--eecccccCCCceeeeceEEEEE
Q 011450          165 LDIRCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLI-SQVSTCSKCGGDGKII--IDHCRRCGGNGEVQSKRSMKVV  241 (485)
Q Consensus       165 ~di~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~-~~~~~C~~C~G~G~~i--~~~C~~C~G~G~v~~~k~l~V~  241 (485)
                      .+-.|+|+|++++. ..+|+.|+|+|.++..++..+ ++ +..++|+.|+|+|+++  .+.|+.|+|.|++++.++++|+
T Consensus        40 ~C~~C~G~G~~~g~-~~~C~~C~G~G~~~~~~~~g~-~~~~~~~~C~~C~G~G~~i~~~~~C~~C~G~g~~~~~~~l~V~  117 (248)
T 1nlt_A           40 LCKECEGRGGKKGA-VKKCTSCNGQGIKFVTRQMGP-MIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVH  117 (248)
T ss_dssp             ECTTTTTCSBSTTT-CCCCTTSSSSSCEEEEEESSS-EEEEEECSCTTCSSSSSCCCTTSBCSSSTTSCEEEEEEEEEEE
T ss_pred             eCCCCcCccCCCCC-CccCCCCCCCcEEEEEEecCc-eEEEEEEcCCCCCCcCEEeccCCCCcccCCCceEeeeEEEEEE
Confidence            45569999999887 599999999999988777776 44 4457999999999999  7889999999999999999999


Q ss_pred             cCCCCCCCCEEEEccccCCCCCCCCCccEEEEEEeeccccccccccceEEEEEecchhhccCceEEEEccCCe-EEEEeC
Q 011450          242 IPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGM-KDLRIP  320 (485)
Q Consensus       242 IP~Gv~dG~~Ir~~G~Gd~~~~g~~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~-~~l~Ip  320 (485)
                      |||||++|++|+|+|+|+++ .++.||||||+|+++||+.|+|+|+|||++++|||+||++|++++|+||||+ +.|+||
T Consensus       118 Ip~G~~~G~~ir~~g~G~~~-~~g~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~~i~ip  196 (248)
T 1nlt_A          118 VEPGMKDGQRIVFKGEADQA-PDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIV  196 (248)
T ss_dssp             ECTTCCTTCEEEETTCSCCC-TTCBCCCEEEEEEECCCSSCEEETTEEEEEEEEEHHHHHHCBCCEEECSSSCEEECCBC
T ss_pred             ECCCccCCCEEEEeeeecCC-CCCCcceEEEEEEEecCccceeeCCEEEEEEEeCHHHHhcCCEEEEeCCCCCEEEEEeC
Confidence            99999999999999999996 4569999999999999999999999999999999999999999999999996 899999


Q ss_pred             CC--CCCCCEEEEcCCCCCCCCCCCCCccEEEEEEEEcCCC--CChhHHHHHH
Q 011450          321 SG--VQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKD--ISDPERALVE  369 (485)
Q Consensus       321 ~g--~q~G~~irl~g~G~P~~~~~~~rGDL~V~~~V~~P~~--ls~~q~~ll~  369 (485)
                      +|  +++|++++|+|+|||..+++ .+|||||+|+|+||+.  |+++|+++|+
T Consensus       197 ~g~vt~~g~~~rl~g~Gmp~~~~~-~~GDL~V~~~V~~P~~~~Ls~~q~~~l~  248 (248)
T 1nlt_A          197 PGEVIAPGMRKVIEGKGMPIPKYG-GYGNLIIKFTIKDPENHFTSEENLKKLE  248 (248)
T ss_dssp             TTTTCSTTCEEEETTCSCBCSSSC-SBCCEEEEEEEECCC-------------
T ss_pred             CCCeeCCCeEEEEcCCCCccCCCC-CcCCEEEEEEEECCCCCCCCHHHHHhhC
Confidence            99  99999999999999987654 6899999999999999  9999999875

>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A

Probab=100.00  E-value=4.4e-40  Score=309.27  Aligned_cols=162  Identities=20%  Similarity=0.364  Sum_probs=148.4

Q ss_pred             ccCCCCcEE--EeecccccCCCceeeeceEEEEEcCCCCCCCCEEEEccccCCCCCCCCCccEEEEEEeecccccccccc
Q 011450          210 SKCGGDGKI--IIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGL  287 (485)
Q Consensus       210 ~~C~G~G~~--i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~dG~~Ir~~G~Gd~~~~g~~~GDL~v~I~v~~h~~F~R~G~  287 (485)
                      ..+.|.-+.  +...|..|+|.|++++.++++|+||||+++|++|+|+|+|++++ ++.+|||||+|++++|+.|+|+|+
T Consensus        15 e~~~G~~k~i~i~~~c~~c~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~G~G~~~~-~g~~GDl~v~i~~~~h~~F~R~G~   93 (181)
T 3agx_A           15 EIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTS-NNIPADIVFVLKDKPHNIFKRDGS   93 (181)
T ss_dssp             HHHHCEEEEEEEEEEEECTTSSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCS-SSCCCCEEEEEEECCCSSCEEETT
T ss_pred             HhcCCcEEEEEEecccCCCCCceEEEEeEEEEEEECCCccCCcEEEEeeccccCC-CCCcccEEEEEEEeccccceeeCC
Confidence            334444333  34469999999999999999999999999999999999999976 679999999999999999999999


Q ss_pred             ceEEEEEecchhhccCceEEEEccCCe-EEEEeCCCCCCCCEEEEcCCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHH
Q 011450          288 NLFSKISVDYTEAILGTSMEVETVEGM-KDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERA  366 (485)
Q Consensus       288 DL~~~~~Isl~eAllG~~i~V~tldG~-~~l~Ip~g~q~G~~irl~g~G~P~~~~~~~rGDL~V~~~V~~P~~ls~~q~~  366 (485)
                      ||+++++|||+||++|++++|+|+||+ +.|+||+++++|++++|+|+|||..++++.+|||||+|+|++|+.|+++|++
T Consensus        94 DL~~~~~Isl~eAllG~~i~v~tldG~~~~i~i~~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~~ls~~q~~  173 (181)
T 3agx_A           94 DVIYPARISLREALCGCTVNVPTLDGRTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRT  173 (181)
T ss_dssp             EEEEEEEEEHHHHHHCEEEEEECTTSCEEEEEECSCCCTTCEEEETTCSCBCSSSTTSBCCEEEEEEEECCSCCCHHHHH
T ss_pred             cEEEEEEcCHHHHhCCCEEEeECCCCCEEEEECCCccCCCcEEEECCcCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHH
Confidence            999999999999999999999999995 8999999999999999999999987655679999999999999999999999


Q ss_pred             HHHHHH
Q 011450          367 LVEEIA  372 (485)
Q Consensus       367 ll~~l~  372 (485)
                      +|++|+
T Consensus       174 ~l~~~~  179 (181)
T 3agx_A          174 VLEQVL  179 (181)
T ss_dssp             HHHHHS
T ss_pred             HHHHhc
Confidence            999986

>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=2e-37  Score=290.87  Aligned_cols=143  Identities=22%  Similarity=0.420  Sum_probs=136.7

Q ss_pred             ceeeeceEEEEEcCCCCCCCCEEEEccccCCCCCCCCCccEEEEEEeeccccccccccceEEEEEecchhhccCceEEEE
Q 011450          230 GEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVE  309 (485)
Q Consensus       230 G~v~~~k~l~V~IP~Gv~dG~~Ir~~G~Gd~~~~g~~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~V~  309 (485)
                      |++++.++++|+|||||++|++|+|+|+|+++.+++.+|||||+|++++|+.|+|+|+||+++++|||+||++|++++|+
T Consensus        36 g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~g~~gg~~GDl~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~  115 (180)
T 2q2g_A           36 KVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDCHLIMKVTIPLVRALTGFTCPVT  115 (180)
T ss_dssp             EEEEEEEEEEEEECTTCCTTCEEEETTCSCCSSTTSCCCEEEEEEEECCCSSCEEETTEEEEEEEEEHHHHHHCEEEEEE
T ss_pred             ceEEeeEEEEEEECCCCcCCcEEEEeeccCCCCCCCccccEEEEEEEEecccEEEcCCEEEEEEEcCHHHHhCCCEEEee
Confidence            77888899999999999999999999999997778999999999999999999999999999999999999999999999


Q ss_pred             ccCCe-EEEEeCCCCCCCCEEEEcCCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHHHHHHHH
Q 011450          310 TVEGM-KDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIA  372 (485)
Q Consensus       310 tldG~-~~l~Ip~g~q~G~~irl~g~G~P~~~~~~~rGDL~V~~~V~~P~~ls~~q~~ll~~l~  372 (485)
                      |+||+ +.|+||+++++|++++|+|+|||..++++.+|||||+|+|++|+.|+++|+++|++|+
T Consensus       116 tldG~~v~i~ip~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l~~~~  179 (180)
T 2q2g_A          116 TLDNRNLQIPIKEIVNPKTRKIVPNEGMPIKNQPGQKGDLILEFDICFPKSLTPEQKKLIKEAL  179 (180)
T ss_dssp             CTTCCEEEEEECSCCCTTCEEEETTCSCBCSSSTTCBCCEEEEEEEECCSCCCHHHHHHHHHHC
T ss_pred             CCCCCEEEEECCCccCCCEEEEECCcCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHhc
Confidence            99995 8899999999999999999999987665679999999999999999999999999985

>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A

Probab=100.00  E-value=1.1e-36  Score=283.54  Aligned_cols=140  Identities=23%  Similarity=0.464  Sum_probs=132.3

Q ss_pred             CceeeeceEEEEEcCCCCCCCCEEEEccccCCCCCCCCCccEEEEEEeeccccccccccceEEEEEecchhhccCceEEE
Q 011450          229 NGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEV  308 (485)
Q Consensus       229 ~G~v~~~k~l~V~IP~Gv~dG~~Ir~~G~Gd~~~~g~~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~V  308 (485)
                      .|.+ +.++++|+||||+.+|++|+|+|+|+++.+++.+|||||+|++++|+.|+|+|+||+++++|||+||++|+++.|
T Consensus        30 ~G~~-~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~gg~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v  108 (170)
T 1c3g_A           30 HGAS-EKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLPLSFKESLLGFSKTI  108 (170)
T ss_dssp             TTEE-EEEEEEEECCTTCCTTCEEEESSCSSBCSSSSCBCEEEEEEEECCCSSEEEETTEEEEEECCBHHHHHHCEEEEE
T ss_pred             CCcE-EeEEEEEEeCCCccCCCEEEEeccccCCCCCCccccEEEEEEEccCCccEEeCCcEeEEEEcCHHHHhCCCeEEe
Confidence            3555 789999999999999999999999998888999999999999999999999999999999999999999999999


Q ss_pred             EccCCe-EEEEeCCCCCCCCEEEEcCCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHHHHH
Q 011450          309 ETVEGM-KDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVE  369 (485)
Q Consensus       309 ~tldG~-~~l~Ip~g~q~G~~irl~g~G~P~~~~~~~rGDL~V~~~V~~P~~ls~~q~~ll~  369 (485)
                      +|+||+ +.|+||+++++|++++|+|+|||..++++.+|||||+|+|++|+.|+++|+++|+
T Consensus       109 ~tldG~~~~i~i~~~t~~g~~~rl~g~G~p~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l~  170 (170)
T 1c3g_A          109 QTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPISLNDAQKRAID  170 (170)
T ss_dssp             ECSSSCEEEEEESSCCCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBCCSSCCTTHHHHTC
T ss_pred             eCCCCCEEEEECCCccCCCcEEEEeCCCCCcCCCCCCCCCEEEEEEEECCCCCCHHHHHhhC
Confidence            999996 8999999999999999999999987665678999999999999999999998873

>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}

Probab=99.93  E-value=9.8e-26  Score=194.94  Aligned_cols=96  Identities=22%  Similarity=0.363  Sum_probs=90.7

Q ss_pred             eccccccccccceEEEEEecchhhccCceEEEEccCCeEEEEeCCCCCCCCEEEEcCCCCCCCCCCCCCccEEEEEEEEc
Q 011450          277 DEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLI  356 (485)
Q Consensus       277 ~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~irl~g~G~P~~~~~~~rGDL~V~~~V~~  356 (485)
                      +||+.|+|+|+||+++++|||.||++|++++|+|+||.+.|+||+|+++|++++|+|+|||. .  +.+|||||+|+|++
T Consensus         2 kph~~F~R~G~DL~~~~~Isl~eAl~G~~i~v~tldG~~~v~ip~g~~~G~~~rl~G~G~p~-~--~~~GDL~v~~~V~~   78 (109)
T 3i38_A            2 NAHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPGSQAGQRLRIKGKGLVS-K--THTGDLFAVIKIVM   78 (109)
T ss_dssp             --CCCCEEETTEEEEEEEECHHHHHHCEEEEECCSSSCEEEEECTTCCTTCEEEETTCSCBC-S--SCBCCEEEEEEECC
T ss_pred             CCCCCeEEECCEEEEEEEcCHHHHhCCCEEEEEcCCCCEEEeeCCCcCcCeEEEECCccCCC-C--CCCcCEEEEEEEEC
Confidence            68999999999999999999999999999999999999999999999999999999999997 3  27999999999999


Q ss_pred             CCCCChhHHHHHHHHHhhc
Q 011450          357 PKDISDPERALVEEIAFLK  375 (485)
Q Consensus       357 P~~ls~~q~~ll~~l~~~~  375 (485)
                      |+.|+++|+++|++|+++.
T Consensus        79 P~~Ls~~q~~~l~~l~~~~   97 (109)
T 3i38_A           79 PTKPDEKARELWQQLAAAE   97 (109)
T ss_dssp             CSSCCHHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHhhc
Confidence            9999999999999999875

>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}

Probab=99.89  E-value=2.2e-23  Score=183.47  Aligned_cols=95  Identities=24%  Similarity=0.360  Sum_probs=85.0

Q ss_pred             cccccccceEEEEEecchhhccCceEEEEccCCe-EEEEeCCC--CCCCCEEEEcCCCCCCCCCCCCCccEEEEEEEEcC
Q 011450          281 GIHRDGLNLFSKISVDYTEAILGTSMEVETVEGM-KDLRIPSG--VQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIP  357 (485)
Q Consensus       281 ~F~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~-~~l~Ip~g--~q~G~~irl~g~G~P~~~~~~~rGDL~V~~~V~~P  357 (485)
                      .|+|+|+||+++++|+|.+|++|+++.|+|+||+ +.|+||+|  +++|++++|+|+|||..+++ .+|||||+|+|++|
T Consensus         1 ~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~~v~ip~g~v~~~G~~~rl~G~Gmp~~~~~-~~GDL~V~~~V~~P   79 (121)
T 1xao_A            1 SFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYG-GYGNLIIKFTIKFP   79 (121)
T ss_dssp             CCEEETTEEEEEEEEEHHHHHHCEEEEEECTTSCEEEEEECTTSCCCTTCEEEETTCSCC-------CCCEEEEEEEECC
T ss_pred             CceEECCeEEEEEEcCHHHHhCCCEEEEecCCCCEEEEEeCCCCeeCCCcEEEECCCCCCCCCCC-CCCCEEEEEEEECC
Confidence            4899999999999999999999999999999997 89999999  99999999999999987654 68999999999999


Q ss_pred             CC--CChhHHHHHHHHHhhcC
Q 011450          358 KD--ISDPERALVEEIAFLKS  376 (485)
Q Consensus       358 ~~--ls~~q~~ll~~l~~~~~  376 (485)
                      +.  |+++|+++|++|+....
T Consensus        80 ~~~~ls~~q~~~l~~l~~~~~  100 (121)
T 1xao_A           80 ENHFTSEENLKKLEEILPPRI  100 (121)
T ss_dssp             CTTCSCHHHHHHHHHHSCCCC
T ss_pred             CCCCCCHHHHHHHHHHccccc
Confidence            99  99999999999986543

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=99.89  E-value=3.8e-24  Score=182.98  Aligned_cols=97  Identities=42%  Similarity=0.710  Sum_probs=70.2

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCC-ccHHHHHHHHHHHHhhhccccccchhccccccCcCcccCCCC
Q 011450           43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS-PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLS  121 (485)
Q Consensus        43 ~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~-~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~~~~~~~~  121 (485)
                      ..|||+||||+++||.+|||+|||+|+++||||+++. +.++++|++|++||++|+||.+|+.||++|++++..+..+++
T Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~~~~~~~   81 (103)
T 1bq0_A            2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGGG   81 (103)
T ss_dssp             CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSSCSCC----
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhhcccCcCCC
Confidence            5799999999999999999999999999999999984 788999999999999999999999999999998875432211


Q ss_pred             CCCCCCCchhhhhhhcCC
Q 011450          122 NTSQGVDPFELYSAFFGG  139 (485)
Q Consensus       122 ~~~~~~dp~d~f~~fFgg  139 (485)
                      +...++++.++|+.+|+.
T Consensus        82 ~~~~~~~~~~~f~~~f~~   99 (103)
T 1bq0_A           82 GFGGGADFSDIFGDVFGD   99 (103)
T ss_dssp             ------------------
T ss_pred             CCCCCCCHHHHHHHHHHh
Confidence            111123556778888754

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.87  E-value=1.1e-22  Score=164.58  Aligned_cols=74  Identities=58%  Similarity=1.024  Sum_probs=70.2

Q ss_pred             cCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhhhccccccchhccccccCcCc
Q 011450           42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITG  115 (485)
Q Consensus        42 ~~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~~  115 (485)
                      +..|||+||||+++||.+|||+|||+|+++||||+++++.+.++|++|++||++|+||.+|+.||++|++++.+
T Consensus         1 m~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~   74 (77)
T 1hdj_A            1 MGKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLKG   74 (77)
T ss_dssp             CCCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGCCS
T ss_pred             CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHHccccccc
Confidence            35799999999999999999999999999999999998889999999999999999999999999999987764

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.85  E-value=4.1e-22  Score=165.58  Aligned_cols=77  Identities=47%  Similarity=0.774  Sum_probs=71.6

Q ss_pred             cCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhhhccccccchhccccccCcCcccC
Q 011450           42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYD  118 (485)
Q Consensus        42 ~~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~~~~~  118 (485)
                      ...|||+||||+++|+.+|||+|||+|+++||||+++.+.+.++|++|++||++|+||.+|+.||++|++++.++.+
T Consensus         5 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~~~   81 (88)
T 2ctr_A            5 SSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFTSGKG   81 (88)
T ss_dssp             CCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHHHTCSSS
T ss_pred             CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccccccCCC
Confidence            46799999999999999999999999999999999998889999999999999999999999999999987765443

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.84  E-value=1.1e-21  Score=159.18  Aligned_cols=73  Identities=48%  Similarity=0.837  Sum_probs=68.7

Q ss_pred             ccCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhhhccccccchhccccccCc
Q 011450           41 AAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGI  113 (485)
Q Consensus        41 ~~~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~  113 (485)
                      ....|||+||||+++|+.+|||+|||+|+++||||+++.+.+.++|++|++||++|+||.+|+.||++|+.+.
T Consensus         4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~   76 (78)
T 2ctp_A            4 GSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGPS   76 (78)
T ss_dssp             SCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCSC
T ss_pred             CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHcCcccc
Confidence            3468999999999999999999999999999999999888899999999999999999999999999998653

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.84  E-value=2.1e-21  Score=157.84  Aligned_cols=73  Identities=51%  Similarity=0.857  Sum_probs=67.7

Q ss_pred             ccCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCC-CccHHHHHHHHHHHHhhhccccccchhccccccCc
Q 011450           41 AAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGI  113 (485)
Q Consensus        41 ~~~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~-~~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~  113 (485)
                      ....|||+||||+++|+.+|||+|||+|+++||||+++ .+.+.++|++|++||++|+||.+|+.||++|..+.
T Consensus         4 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~   77 (79)
T 2dn9_A            4 GSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGPS   77 (79)
T ss_dssp             SCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCCCS
T ss_pred             CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCcCC
Confidence            34679999999999999999999999999999999997 47789999999999999999999999999997653

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=99.84  E-value=2.8e-21  Score=160.55  Aligned_cols=73  Identities=49%  Similarity=0.848  Sum_probs=68.9

Q ss_pred             cccCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhhhccccccchhccccccC
Q 011450           40 RAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAG  112 (485)
Q Consensus        40 ~~~~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~  112 (485)
                      .....|||+||||+++|+.+|||+|||+|+++||||+++++.++++|++|++||++|+||.+|+.||++|+.+
T Consensus        13 ~~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~   85 (88)
T 2cug_A           13 SALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYGSGP   85 (88)
T ss_dssp             CSSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTCC
T ss_pred             ccCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCCC
Confidence            3457899999999999999999999999999999999998889999999999999999999999999999754

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.83  E-value=2.8e-21  Score=158.17  Aligned_cols=73  Identities=48%  Similarity=0.817  Sum_probs=67.4

Q ss_pred             cCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--cHHHHHHHHHHHHhhhccccccchhccccccCcC
Q 011450           42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSP--GAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGIT  114 (485)
Q Consensus        42 ~~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~~--~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~  114 (485)
                      ...|||+||||+++|+.+|||+|||+|+++||||+++..  .++++|++|++||++|+||.+|+.||++|+.++.
T Consensus         7 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~~   81 (82)
T 2ej7_A            7 GMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGPSS   81 (82)
T ss_dssp             SSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCCSCC
T ss_pred             CCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCccccC
Confidence            457999999999999999999999999999999999753  6788999999999999999999999999987654

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.83  E-value=3e-21  Score=166.72  Aligned_cols=83  Identities=46%  Similarity=0.780  Sum_probs=74.4

Q ss_pred             cccccccccccCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCC-ccHHHHHHHHHHHHhhhccccccchhccccc
Q 011450           32 RSHRRGMIRAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS-PGAEEKFKEISSAYEVLSDDEKRSVYDRFGE  110 (485)
Q Consensus        32 ~~~~~~~~~~~~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~-~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~  110 (485)
                      ++++...+.....|||+||||+++|+.+|||+|||+|+++||||+++. +.+.++|++|++||++|+||.+|+.||++|.
T Consensus         5 ~s~~~r~~~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~   84 (109)
T 2ctw_A            5 SSGRQRSLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGS   84 (109)
T ss_dssp             SCCCCCCTTSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCH
T ss_pred             CCCCCcccCCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhcc
Confidence            344555566778999999999999999999999999999999999974 6789999999999999999999999999998


Q ss_pred             cCcC
Q 011450          111 AGIT  114 (485)
Q Consensus       111 ~~~~  114 (485)
                      .++.
T Consensus        85 ~~~~   88 (109)
T 2ctw_A           85 LGLY   88 (109)
T ss_dssp             HHHH
T ss_pred             cccc
Confidence            7654

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=4.3e-21  Score=160.57  Aligned_cols=76  Identities=47%  Similarity=0.713  Sum_probs=69.5

Q ss_pred             cCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCC--ccHHHHHHHHHHHHhhhccccccchhccccccCcCccc
Q 011450           42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS--PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEY  117 (485)
Q Consensus        42 ~~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~--~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~~~~  117 (485)
                      ...|||+||||+++|+.+|||+|||+|+++||||+++.  +.++++|++|++||++|+||.+|+.||++|.+++..++
T Consensus         7 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~~   84 (92)
T 2dmx_A            7 GMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSWRAGG   84 (92)
T ss_dssp             CCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCSSCCCC
T ss_pred             CCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccCCC
Confidence            34799999999999999999999999999999999975  36789999999999999999999999999998876543

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=99.83  E-value=3.6e-21  Score=154.24  Aligned_cols=70  Identities=50%  Similarity=0.823  Sum_probs=62.8

Q ss_pred             cccCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhhhccccccchhcccccc
Q 011450           40 RAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEA  111 (485)
Q Consensus        40 ~~~~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~  111 (485)
                      |....|||+||||+++|+.+|||+|||+|+++||||+++.  +.++|++|++||++|+||.+|+.||++|++
T Consensus         4 m~~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~--~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~   73 (73)
T 2och_A            4 MVKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPD--GAEQFKQISQAYEVLSDEKKRQIYDQGGEE   73 (73)
T ss_dssp             --CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTT--CHHHHHHHHHHHHHHTSHHHHHHHHHTC--
T ss_pred             ccCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcC--HHHHHHHHHHHHHHHCCHHHHHHHHhcCCC
Confidence            4567899999999999999999999999999999999964  468999999999999999999999999863

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=99.82  E-value=2.3e-21  Score=162.38  Aligned_cols=74  Identities=46%  Similarity=0.728  Sum_probs=67.8

Q ss_pred             cccCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhhhccccccchhccccccCcCc
Q 011450           40 RAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITG  115 (485)
Q Consensus        40 ~~~~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~~  115 (485)
                      |....|||+||||+++|+.+|||+|||+|+++||||+++  .+.++|++|++||++|+||.+|+.||++|++++..
T Consensus         4 m~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~--~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~   77 (92)
T 2o37_A            4 MVKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPT--GDTEKFKEISEAFEILNDPQKREIYDQYGLEAARS   77 (92)
T ss_dssp             CCSCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTT--CCHHHHHHHHHHHHHHTSHHHHHHHHHHCHHHHHT
T ss_pred             cccCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC--ChHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHhhc
Confidence            346789999999999999999999999999999999995  34679999999999999999999999999887764

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.81  E-value=7.8e-21  Score=164.83  Aligned_cols=74  Identities=27%  Similarity=0.557  Sum_probs=69.1

Q ss_pred             ccCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCC-CccHHHHHHHHHHHHhhhccccccchhccccccCcC
Q 011450           41 AAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGIT  114 (485)
Q Consensus        41 ~~~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~-~~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~  114 (485)
                      ....|||+||||+++|+.+|||+|||+|+++||||+++ ++.++++|++|++||++|+||.+|+.||++|++++.
T Consensus        17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~   91 (112)
T 2ctq_A           17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQMS   91 (112)
T ss_dssp             CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTCS
T ss_pred             cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhccC
Confidence            45689999999999999999999999999999999998 578999999999999999999999999999987653

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=99.81  E-value=8.7e-21  Score=161.13  Aligned_cols=73  Identities=49%  Similarity=0.875  Sum_probs=64.6

Q ss_pred             CCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCC--ccHHHHHHHHHHHHhhhccccccchhccccccCcCcc
Q 011450           44 TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS--PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGE  116 (485)
Q Consensus        44 ~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~--~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~~~  116 (485)
                      +|||+||||+++|+.+|||+|||+|+++||||+++.  +.++++|++|++||++|+||.+|+.||++|.+++.+.
T Consensus         2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~~~~   76 (99)
T 2lgw_A            2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLTGT   76 (99)
T ss_dssp             CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC-----
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccCC
Confidence            599999999999999999999999999999999975  3478999999999999999999999999998877643

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.81  E-value=1.4e-20  Score=159.75  Aligned_cols=70  Identities=40%  Similarity=0.525  Sum_probs=65.0

Q ss_pred             ccccCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCC-CccHHHHHHHHHHHHhhhccccccchhccc
Q 011450           39 IRAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRF  108 (485)
Q Consensus        39 ~~~~~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~-~~~a~e~F~~I~~AYevLsDp~kR~~YD~~  108 (485)
                      ......|||+||||+++|+.+|||+|||+|+++||||+++ ++.+.++|++|++||++|+||.+|+.||+.
T Consensus        12 ~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~   82 (99)
T 2yua_A           12 CSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRG   82 (99)
T ss_dssp             CSSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHT
T ss_pred             CCCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHh
Confidence            3456789999999999999999999999999999999997 577899999999999999999999999984

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=99.78  E-value=6.5e-20  Score=153.72  Aligned_cols=69  Identities=32%  Similarity=0.580  Sum_probs=63.9

Q ss_pred             cCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCC-------ccHHHHHHHHHHHHhhhccccccchhccccc
Q 011450           42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS-------PGAEEKFKEISSAYEVLSDDEKRSVYDRFGE  110 (485)
Q Consensus        42 ~~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~-------~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~  110 (485)
                      ...|||+||||+++|+.+|||+|||+|+++||||+++.       +.+.++|++|++||++|+||.+|+.||++..
T Consensus        14 ~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   89 (94)
T 1wjz_A           14 LKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS   89 (94)
T ss_dssp             SCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred             CCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence            46899999999999999999999999999999999863       4678999999999999999999999998654

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.78  E-value=1.4e-19  Score=171.44  Aligned_cols=89  Identities=38%  Similarity=0.711  Sum_probs=76.3

Q ss_pred             CCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCC-CccHHHHHHHHHHHHhhhccccccchhccccccCcCcccCCCCC
Q 011450           44 TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSN  122 (485)
Q Consensus        44 ~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~-~~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~~~~~~~~~  122 (485)
                      .|||++|||+++|+.+|||+|||+||++||||+++ ++++.++|++|++||++|+||.+|+.||++|++++....+    
T Consensus         2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~~~~~----   77 (210)
T 3apq_A            2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDNQG----   77 (210)
T ss_dssp             CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTCCTTCS----
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhcccccccccc----
Confidence            58999999999999999999999999999999996 5789999999999999999999999999999988764432    


Q ss_pred             CCCCCCchhhhhhhcC
Q 011450          123 TSQGVDPFELYSAFFG  138 (485)
Q Consensus       123 ~~~~~dp~d~f~~fFg  138 (485)
                        .....+.+|...|+
T Consensus        78 --~~~~~~~~~~~~fg   91 (210)
T 3apq_A           78 --GQYESWSYYRYDFG   91 (210)
T ss_dssp             --CCCCCHHHHHHSSS
T ss_pred             --cccccccccccccc
Confidence              12345666666653

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=99.76  E-value=1.4e-19  Score=155.96  Aligned_cols=72  Identities=39%  Similarity=0.597  Sum_probs=66.5

Q ss_pred             cccCCCcchhccCCCCC-CHHHHHHHHHHHHHHhCCCCCCC----ccHHHHHHHHHHHHhhhccccccchhcccccc
Q 011450           40 RAAGTDYYSTLNVRQNA-TLQEIKTSYRKLARKYHPDINKS----PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEA  111 (485)
Q Consensus        40 ~~~~~d~Y~iLgv~~~A-s~~eIk~AYr~la~k~HPD~n~~----~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~  111 (485)
                      +....|||+||||+++| +.+|||+|||+|+++||||+++.    +.+.++|++|++||++|+||.+|+.||+++..
T Consensus        11 ~~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~   87 (109)
T 2qsa_A           11 YCGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDH   87 (109)
T ss_dssp             TTTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC
T ss_pred             HcCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccC
Confidence            34578999999999999 99999999999999999999975    56889999999999999999999999998854

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.75  E-value=7.8e-19  Score=146.47  Aligned_cols=64  Identities=33%  Similarity=0.515  Sum_probs=60.9

Q ss_pred             ccCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhhhccccccch
Q 011450           41 AAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSV  104 (485)
Q Consensus        41 ~~~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYevLsDp~kR~~  104 (485)
                      ....|||+||||+++|+.+|||+|||+|+++||||+++++.+.++|++|++||++|+||.+|+.
T Consensus        24 ~~~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~   87 (90)
T 2ys8_A           24 RNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGP   87 (90)
T ss_dssp             HTCSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred             hcCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCcccccC
Confidence            3568999999999999999999999999999999999988999999999999999999999875

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=99.70  E-value=5.7e-18  Score=154.76  Aligned_cols=69  Identities=32%  Similarity=0.574  Sum_probs=63.1

Q ss_pred             cCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-------cHHHHHHHHHHHHhhhccccccchhccccc
Q 011450           42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSP-------GAEEKFKEISSAYEVLSDDEKRSVYDRFGE  110 (485)
Q Consensus        42 ~~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~~-------~a~e~F~~I~~AYevLsDp~kR~~YD~~G~  110 (485)
                      ...|||+||||+++|+.+|||+|||+|+++||||+++..       .|.++|++|++||++|+||.+|+.||..+.
T Consensus         8 ~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~   83 (155)
T 2l6l_A            8 PKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRC   83 (155)
T ss_dssp             CCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHH
T ss_pred             CCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence            457999999999999999999999999999999999754       267899999999999999999999998653

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=99.70  E-value=1.2e-18  Score=151.59  Aligned_cols=66  Identities=24%  Similarity=0.415  Sum_probs=61.5

Q ss_pred             cCCCcchhccCCCCCCH--HHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhhhccccccchhccccc
Q 011450           42 AGTDYYSTLNVRQNATL--QEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGE  110 (485)
Q Consensus        42 ~~~d~Y~iLgv~~~As~--~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~  110 (485)
                      ...|||+||||+++|+.  +|||+|||+||++||||++++   .++|++|++||++|+||.+|+.||.+|.
T Consensus         6 ~~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~---~e~f~~I~~AYevL~d~~~R~~~~~~~~   73 (114)
T 1gh6_A            6 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKKMEDGVKYAHQPDFGG   73 (114)
T ss_dssp             HHHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT---TTTTHHHHHHHHHHHHHHHSCCSSCCSC
T ss_pred             hhhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc---HHHHHHHHHHHHHHCCHHHHHHhhhccc
Confidence            34799999999999999  999999999999999999965   4799999999999999999999999875

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=99.69  E-value=6.8e-18  Score=137.48  Aligned_cols=67  Identities=13%  Similarity=0.297  Sum_probs=60.4

Q ss_pred             CCCcchhccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhhhccccccchhccccccCc
Q 011450           43 GTDYYSTLNVRQN--ATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGI  113 (485)
Q Consensus        43 ~~d~Y~iLgv~~~--As~~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~  113 (485)
                      ..++|+||||+++  |+.+|||+|||+||++||||++.   +.++|++|++||++|+|+.+|.. |.||.+++
T Consensus        10 ~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~---~~~~f~~i~~AYe~L~~~~~r~~-~~~g~~~~   78 (79)
T 1faf_A           10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGG---SHALMQELNSLWGTFKTEVYNLR-MNLGGTGF   78 (79)
T ss_dssp             HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSC---CHHHHHHHHHHHHHHHHHHHHHT-TCCSSCCC
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC---CHHHHHHHHHHHHHHhhHHHHHH-HhcCCccC
Confidence            4689999999999  99999999999999999999984   46899999999999999999988 56887653

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=99.68  E-value=1.9e-18  Score=160.35  Aligned_cols=66  Identities=24%  Similarity=0.452  Sum_probs=58.9

Q ss_pred             cCCCcchhccCCCCCC--HHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhhhccccccchhccccc
Q 011450           42 AGTDYYSTLNVRQNAT--LQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGE  110 (485)
Q Consensus        42 ~~~d~Y~iLgv~~~As--~~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~  110 (485)
                      ...|||++|||+++|+  .+|||+|||+||+++|||++++   +++|++|++||++|+||.+|+.||+||.
T Consensus         9 ~~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~---~e~F~~I~~AYevLsdp~kR~~YD~~G~   76 (174)
T 2pf4_E            9 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKKMEDGVKYAHQPDFGG   76 (174)
T ss_dssp             HHHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C---CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred             ccccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC---HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence            4579999999999999  6999999999999999999965   3789999999999999999999999995

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.67  E-value=1.7e-17  Score=137.92  Aligned_cols=70  Identities=21%  Similarity=0.135  Sum_probs=60.9

Q ss_pred             cccccccCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCC--ccHHHHHHHHHHHHhhhccccccchh
Q 011450           36 RGMIRAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS--PGAEEKFKEISSAYEVLSDDEKRSVY  105 (485)
Q Consensus        36 ~~~~~~~~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~--~~a~e~F~~I~~AYevLsDp~kR~~Y  105 (485)
                      .+.......++|+||||+++||.+|||+|||+||++||||+|++  +.++++|++|++||++|+|...|..+
T Consensus         8 ~~~~~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r~~~   79 (88)
T 1iur_A            8 LVPRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLDQN   79 (88)
T ss_dssp             CCCSSSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTCSSS
T ss_pred             CCCCCccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhcccccc
Confidence            33444556899999999999999999999999999999999986  35889999999999999998887443

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.63  E-value=2.3e-17  Score=184.64  Aligned_cols=82  Identities=38%  Similarity=0.683  Sum_probs=40.9

Q ss_pred             ccccccccCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCC-CccHHHHHHHHHHHHhhhccccccchhccccccCc
Q 011450           35 RRGMIRAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGI  113 (485)
Q Consensus        35 ~~~~~~~~~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~-~~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~  113 (485)
                      +.+.....+.|||++|||+++||.+|||+|||+||++||||+|+ ++.+.++|++|++||++|+||.+|+.||+||++++
T Consensus        12 ~~~~~~~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~   91 (780)
T 3apo_A           12 SGHIEGRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGL   91 (780)
T ss_dssp             -----------CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC-----
T ss_pred             CCCCCCCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhccccc
Confidence            34445566799999999999999999999999999999999996 57789999999999999999999999999999887


Q ss_pred             Ccc
Q 011450          114 TGE  116 (485)
Q Consensus       114 ~~~  116 (485)
                      ..+
T Consensus        92 ~~~   94 (780)
T 3apo_A           92 EDN   94 (780)
T ss_dssp             ---
T ss_pred             ccC
Confidence            654

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=99.62  E-value=1.2e-16  Score=149.27  Aligned_cols=62  Identities=21%  Similarity=0.393  Sum_probs=58.6

Q ss_pred             CCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc----HHHHHHHHHHHHhhhccccccchh
Q 011450           44 TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPG----AEEKFKEISSAYEVLSDDEKRSVY  105 (485)
Q Consensus        44 ~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~~~----a~e~F~~I~~AYevLsDp~kR~~Y  105 (485)
                      .|||++|||+++|+.+|||+|||+||++||||+++...    |+++|++|++||++|+||.+|+.|
T Consensus       117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y  182 (182)
T 1n4c_A          117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY  182 (182)
T ss_dssp             CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence            69999999999999999999999999999999997543    789999999999999999999988

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=99.62  E-value=1.1e-16  Score=148.58  Aligned_cols=66  Identities=24%  Similarity=0.360  Sum_probs=60.2

Q ss_pred             CCcchhccCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcc------HHHHHHHHHHHHhhhccccccchhcccc
Q 011450           44 TDYYSTLNVRQNA--TLQEIKTSYRKLARKYHPDINKSPG------AEEKFKEISSAYEVLSDDEKRSVYDRFG  109 (485)
Q Consensus        44 ~d~Y~iLgv~~~A--s~~eIk~AYr~la~k~HPD~n~~~~------a~e~F~~I~~AYevLsDp~kR~~YD~~G  109 (485)
                      .|||++|||++++  |.++||+|||+|+++||||+++...      |.++|+.|++||++|+||.+|+.||...
T Consensus         1 ~d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l   74 (171)
T 1fpo_A            1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSL   74 (171)
T ss_dssp             CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHh
Confidence            3899999999999  9999999999999999999997532      4579999999999999999999999853

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=99.61  E-value=2.3e-16  Score=150.71  Aligned_cols=66  Identities=23%  Similarity=0.400  Sum_probs=59.7

Q ss_pred             cCCCcchhccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc------cHHHHHHHHHHHHhhhccccccchhcc
Q 011450           42 AGTDYYSTLNVRQN--ATLQEIKTSYRKLARKYHPDINKSP------GAEEKFKEISSAYEVLSDDEKRSVYDR  107 (485)
Q Consensus        42 ~~~d~Y~iLgv~~~--As~~eIk~AYr~la~k~HPD~n~~~------~a~e~F~~I~~AYevLsDp~kR~~YD~  107 (485)
                      ...|||++|||+++  ++.++||+|||+|+++||||+++..      .|.++|++|++||++|+||.+|+.||.
T Consensus        41 ~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~  114 (207)
T 3bvo_A           41 PTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLL  114 (207)
T ss_dssp             TTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred             CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence            35799999999987  7999999999999999999999753      256789999999999999999999995

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=99.60  E-value=1.9e-16  Score=132.41  Aligned_cols=55  Identities=20%  Similarity=0.294  Sum_probs=51.0

Q ss_pred             CCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCc----cHHHHHHHHHHHHhhhcc
Q 011450           44 TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSP----GAEEKFKEISSAYEVLSD   98 (485)
Q Consensus        44 ~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~~----~a~e~F~~I~~AYevLsD   98 (485)
                      .++|++|||+++||.+|||+|||+||++||||+|++.    .|+++|++|++||+||.+
T Consensus        33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence            5899999999999999999999999999999999753    278899999999999975

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=99.59  E-value=2.3e-16  Score=135.39  Aligned_cols=58  Identities=17%  Similarity=0.264  Sum_probs=52.3

Q ss_pred             cCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--------cHHHHHHHHHHHHhhhcccc
Q 011450           42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSP--------GAEEKFKEISSAYEVLSDDE  100 (485)
Q Consensus        42 ~~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~~--------~a~e~F~~I~~AYevLsDp~  100 (485)
                      .+.|||++||++. ||.+|||+|||+||++||||+|+++        .|+++|++|++||++|+|+.
T Consensus        39 ~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~  104 (106)
T 3ag7_A           39 SGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG  104 (106)
T ss_dssp             TTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             ccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence            4579999999996 9999999999999999999998632        36889999999999999985

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.57  E-value=9.2e-16  Score=122.27  Aligned_cols=58  Identities=22%  Similarity=0.284  Sum_probs=52.6

Q ss_pred             CCCcchhccCCC-CCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhhhccccccc
Q 011450           43 GTDYYSTLNVRQ-NATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRS  103 (485)
Q Consensus        43 ~~d~Y~iLgv~~-~As~~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYevLsDp~kR~  103 (485)
                      ..++|+||||++ +||.+|||+|||+|+++||||++   ++.++|++|++||++|+|+..|+
T Consensus        13 ~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~---g~~~~f~~i~~Aye~L~~~~~rk   71 (71)
T 2guz_A           13 SKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKG---GSPFLATKINEAKDFLEKRGISK   71 (71)
T ss_dssp             HHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGT---CCHHHHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCC---CCHHHHHHHHHHHHHHhhhhhcC
Confidence            369999999999 79999999999999999999997   34579999999999999987764

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=99.56  E-value=5.6e-16  Score=145.15  Aligned_cols=65  Identities=23%  Similarity=0.437  Sum_probs=59.3

Q ss_pred             cCCCcchhc------cCCC-CCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhhhccccccchhccc
Q 011450           42 AGTDYYSTL------NVRQ-NATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRF  108 (485)
Q Consensus        42 ~~~d~Y~iL------gv~~-~As~~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYevLsDp~kR~~YD~~  108 (485)
                      ..+|||++|      |+++ +|+.++||+|||+|+++||||+++.  +.++|++|++||++|+||.+|+.||..
T Consensus         9 ~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~--a~~~f~~i~~AY~vL~dp~~R~~Yd~~   80 (181)
T 3uo3_A            9 FTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ--GSEQSSTLNQAYHTLKDPLRRSQYMLK   80 (181)
T ss_dssp             CSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS--CSSGGGSHHHHHHHHHSHHHHHHHHHH
T ss_pred             CCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc--HHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence            347999999      4665 8999999999999999999999975  778999999999999999999999983

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.27  E-value=2.3e-12  Score=109.95  Aligned_cols=75  Identities=33%  Similarity=0.647  Sum_probs=65.8

Q ss_pred             ccccccCCCCCCCCCCcccCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEeecccccCCCceeeeceEEEEEc
Q 011450          164 GLDIRCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVI  242 (485)
Q Consensus       164 ~~di~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~I  242 (485)
                      ..+-.|+|+|++++....+|+.|+|+|.+...+    |+|++.++|+.|+|+|+++.++|+.|+|.|++++.++|+|+|
T Consensus        29 ~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~----G~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~~  103 (104)
T 2ctt_A           29 DTCERCNGKGNEPGTKVQHCHYCGGSGMETINT----GPFVMRSTCRRCGGRGSIIISPCVVCRGAGQAKQKKRSGPSS  103 (104)
T ss_dssp             EECSSSSSSSSCTTCCCEECSSSSSSCEEEEEE----TTEEEEEECSSSSSSSEECSSCCSSSSSCSEECCCCSSCCSC
T ss_pred             eECCCCcCCccCCCCCCccCCCCCCCEEEEEEe----CCEEEEEECCcCCCcceECCCcCCCCCCeeEEEEEEEEEEEc
Confidence            455569999999988889999999999876543    567778899999999999999999999999999999988876

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=99.09  E-value=4.7e-11  Score=117.00  Aligned_cols=51  Identities=18%  Similarity=0.309  Sum_probs=44.3

Q ss_pred             EEEEeCCCCCCCCEEEEcCCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHHH
Q 011450          315 KDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERAL  367 (485)
Q Consensus       315 ~~l~Ip~g~q~G~~irl~g~G~P~~~~~~~rGDL~V~~~V~~P~~ls~~q~~l  367 (485)
                      ++|+||+|+.+|++|+++|+|-+..+  +..|||||+|+|.-++.|..+..+|
T Consensus       114 l~V~Ip~G~~~G~~ir~~g~G~~~~~--g~~GDl~v~i~v~~h~~F~R~G~DL  164 (248)
T 1nlt_A          114 LEVHVEPGMKDGQRIVFKGEADQAPD--VIPGDVVFIVSERPHKSFKRDGDDL  164 (248)
T ss_dssp             EEEEECTTCCTTCEEEETTCSCCCTT--CBCCCEEEEEEECCCSSCEEETTEE
T ss_pred             EEEEECCCccCCCEEEEeeeecCCCC--CCcceEEEEEEEecCccceeeCCEE
Confidence            68999999999999999999998643  3689999999999888888776554

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.02  E-value=1.5e-10  Score=117.55  Aligned_cols=65  Identities=49%  Similarity=0.714  Sum_probs=56.3

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCc----cHHHHHHHHHHHHhhhccccccchhcc
Q 011450           43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSP----GAEEKFKEISSAYEVLSDDEKRSVYDR  107 (485)
Q Consensus        43 ~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~~----~a~e~F~~I~~AYevLsDp~kR~~YD~  107 (485)
                      ..++|.+||+.+.++.++|+++|+++++++|||+.+.+    .++++|++|.+||++|+||++|+.||+
T Consensus       381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~  449 (450)
T 2y4t_A          381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD  449 (450)
T ss_dssp             SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred             chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence            46999999999999999999999999999999999764    388999999999999999999999996

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=98.97  E-value=6.7e-10  Score=89.61  Aligned_cols=66  Identities=38%  Similarity=0.784  Sum_probs=56.2

Q ss_pred             cccccCCCCCCCCCCcccCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEeecccccCCCceeee
Q 011450          165 LDIRCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQS  234 (485)
Q Consensus       165 ~di~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~  234 (485)
                      ..-.|+|+|+.......+|+.|+|+|.++..+    |+++...+|+.|+|.|+++.+.|+.|+|.|++.+
T Consensus        13 ~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~~~~   78 (79)
T 1exk_A           13 ECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQ----GFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRVER   78 (79)
T ss_dssp             ECGGGTTTSBCSSSCCEECTTTTTSSEEEEEE----TTEEEEEECTTTTTSSEECSSBCGGGTTSSEEEC
T ss_pred             ECCCCcccccCCCccCCCCCCCcCeEEEEEEc----CCCEEeeECcCCCCccEECCCcCCCCCCeEEEee
Confidence            44459999998777778999999999877643    6677778999999999999999999999998753

>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}

Probab=98.77  E-value=4.4e-09  Score=98.12  Aligned_cols=81  Identities=15%  Similarity=0.224  Sum_probs=67.4

Q ss_pred             ccceEEEEEecchhhccCceEEEEccC------------CeEEEEeCCCCCCCCEEEEcCCCCCCCCCCCCCccEEEEEE
Q 011450          286 GLNLFSKISVDYTEAILGTSMEVETVE------------GMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVN  353 (485)
Q Consensus       286 G~DL~~~~~Isl~eAllG~~i~V~tld------------G~~~l~Ip~g~q~G~~irl~g~G~P~~~~~~~rGDL~V~~~  353 (485)
                      |.|+.+++.|||.||+.|++++|....            ..++|+||+|+.+|++++++|+|-+... .+..|||||+|+
T Consensus         3 g~d~~~~l~islee~~~G~~k~i~~~~~~~c~~g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~g~~-gg~~GDl~v~i~   81 (180)
T 2q2g_A            3 PRSHEVPLLVTLEELYLGKRKKIKVTRKRFIEHKVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESP-GTSPGDLVLIIQ   81 (180)
T ss_dssp             -CEEEEEEEECHHHHHHCEEEEEEEEEEEEETTEEEEEEEEEEEEECTTCCTTCEEEETTCSCCSST-TSCCCEEEEEEE
T ss_pred             CCCEEEEEEeeHHHhcCCcEEEEEEeEEEecCCceEEeeEEEEEEECCCCcCCcEEEEeeccCCCCC-CCccccEEEEEE
Confidence            789999999999999999998887432            2378999999999999999999987322 257899999999


Q ss_pred             EEcCCCCChhHHHH
Q 011450          354 VLIPKDISDPERAL  367 (485)
Q Consensus       354 V~~P~~ls~~q~~l  367 (485)
                      +.-++.|..+..+|
T Consensus        82 ~~~h~~F~R~G~DL   95 (180)
T 2q2g_A           82 TKTHPRFTRDDCHL   95 (180)
T ss_dssp             ECCCSSCEEETTEE
T ss_pred             EEecccEEEcCCEE
Confidence            99888888776544

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=98.76  E-value=9e-09  Score=104.70  Aligned_cols=83  Identities=19%  Similarity=0.300  Sum_probs=63.4

Q ss_pred             ccccceEEEEEecchhhccCceEEEEcc------C--------CeEEEEeCCCCCCCCEEEEcCCCCCCCCCCCCCccEE
Q 011450          284 RDGLNLFSKISVDYTEAILGTSMEVETV------E--------GMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHL  349 (485)
Q Consensus       284 R~G~DL~~~~~Isl~eAllG~~i~V~tl------d--------G~~~l~Ip~g~q~G~~irl~g~G~P~~~~~~~rGDL~  349 (485)
                      ++|.||++++.|+|.||+.|.+..|...      .        ..++|+||+|+++|++|+++|+|.|...+ +.+||||
T Consensus       138 ~~g~Dl~~~l~vsleea~~G~~k~i~i~~~v~~g~G~v~~~~~~~l~V~IP~Gv~~G~~Irl~G~G~~g~~g-g~~GDL~  216 (329)
T 3lz8_A          138 ARGHDLEIEVAVFLEETLAEQTRTISYNLPVYNVFGMIESETPKTLNVKIPAGVVDGQRIRLKGQGTPGENG-GPNGDLW  216 (329)
T ss_dssp             CCCCCEEEEECCCTTGGGSCEEEEEEEEEEECCSCC-CCEEEEEEEEEEECTTCCTTCEEEESSCSCCC----CCCCCEE
T ss_pred             CCCCCEEEEEecchhhhhhccceEEEEEEEeecCCeEEEEecceEEEEeCCCCCCCCCEEEEcccccCCCCC-CCCCcEE
Confidence            4677788888888888888876655432      2        23689999999999999999999987543 5689999


Q ss_pred             EEEEEEcCCCCChhHHHH
Q 011450          350 FIVNVLIPKDISDPERAL  367 (485)
Q Consensus       350 V~~~V~~P~~ls~~q~~l  367 (485)
                      |+|+|.-++.+..+..+|
T Consensus       217 v~I~v~~h~~F~R~G~DL  234 (329)
T 3lz8_A          217 LVIHIAPHPLFDIVGHNL  234 (329)
T ss_dssp             EEECCCCCSSCEEETTEE
T ss_pred             EEEEEecCCccEEcCCcE
Confidence            999999888776665443

>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A

Probab=98.75  E-value=3.9e-09  Score=97.62  Aligned_cols=80  Identities=11%  Similarity=0.197  Sum_probs=66.8

Q ss_pred             cceEEEEEecchhhccCceEEEEccC---------CeEEEEeCCCCCCCCEEEEcCCCCCCCCCCCCCccEEEEEEEEcC
Q 011450          287 LNLFSKISVDYTEAILGTSMEVETVE---------GMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIP  357 (485)
Q Consensus       287 ~DL~~~~~Isl~eAllG~~i~V~tld---------G~~~l~Ip~g~q~G~~irl~g~G~P~~~~~~~rGDL~V~~~V~~P  357 (485)
                      .|+.+++.|||.||+.|++++|....         ..++|+||+|+.+|++++++|+|-+...+ +.+|||||+|++.-+
T Consensus         1 ~d~~~~l~islee~~~G~~k~i~~~~~~~~G~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~g-g~~GDl~v~i~v~~h   79 (170)
T 1c3g_A            1 ETVQVNLPVSLEDLFVGKKKSFKIGRKGPHGASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQT-GRRKTLQFVIQEKSH   79 (170)
T ss_dssp             CEEEEEEEECHHHHHHTCEEEEEEEEEETTTEEEEEEEEEECCTTCCTTCEEEESSCSSBCSSS-SCBCEEEEEEEECCC
T ss_pred             CCEEEEEEeEHHHhhCCcEEEEEEEEecCCCcEEeEEEEEEeCCCccCCCEEEEeccccCCCCC-CccccEEEEEEEccC
Confidence            38999999999999999998887541         23789999999999999999999865433 578999999999988


Q ss_pred             CCCChhHHHH
Q 011450          358 KDISDPERAL  367 (485)
Q Consensus       358 ~~ls~~q~~l  367 (485)
                      +.|..+..+|
T Consensus        80 ~~F~R~G~DL   89 (170)
T 1c3g_A           80 PNFKRDGDDL   89 (170)
T ss_dssp             SSEEEETTEE
T ss_pred             CccEEeCCcE
Confidence            8877665544

>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A

Probab=98.71  E-value=7e-09  Score=96.87  Aligned_cols=80  Identities=13%  Similarity=0.246  Sum_probs=64.7

Q ss_pred             ccceEEEEEecchhhccCceEEEEcc------CC--------eEEEEeCCCCCCCCEEEEcCCCCCCCCCCCCCccEEEE
Q 011450          286 GLNLFSKISVDYTEAILGTSMEVETV------EG--------MKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFI  351 (485)
Q Consensus       286 G~DL~~~~~Isl~eAllG~~i~V~tl------dG--------~~~l~Ip~g~q~G~~irl~g~G~P~~~~~~~rGDL~V~  351 (485)
                      |.|+.+++.|||.||+.|++++|...      .|        .++|+||+|+.+|++++++|+|-+..+  +.+|||||+
T Consensus         2 ~~d~~~~l~islee~~~G~~k~i~i~~~c~~c~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~G~G~~~~~--g~~GDl~v~   79 (181)
T 3agx_A            2 DPPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSN--NIPADIVFV   79 (181)
T ss_dssp             ----CEEEEECHHHHHHCEEEEEEEEEEEECTTSSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCSS--SCCCCEEEE
T ss_pred             CCCEEEEEEEEHHHhcCCcEEEEEEecccCCCCCceEEEEeEEEEEEECCCccCCcEEEEeeccccCCC--CCcccEEEE
Confidence            57899999999999999999887643      23        268999999999999999999998653  478999999


Q ss_pred             EEEEcCCCCChhHHHH
Q 011450          352 VNVLIPKDISDPERAL  367 (485)
Q Consensus       352 ~~V~~P~~ls~~q~~l  367 (485)
                      |++.-++.|..+..+|
T Consensus        80 i~~~~h~~F~R~G~DL   95 (181)
T 3agx_A           80 LKDKPHNIFKRDGSDV   95 (181)
T ss_dssp             EEECCCSSCEEETTEE
T ss_pred             EEEeccccceeeCCcE
Confidence            9999988888776544

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=98.49  E-value=7.9e-08  Score=75.00  Aligned_cols=51  Identities=14%  Similarity=0.119  Sum_probs=44.5

Q ss_pred             CcchhccCCCC---CCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhhhcc
Q 011450           45 DYYSTLNVRQN---ATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSD   98 (485)
Q Consensus        45 d~Y~iLgv~~~---As~~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYevLsD   98 (485)
                      +-|.||||+++   ++.++|++|||+|....|||+..   ..-....|++|++.|..
T Consensus         5 EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGG---S~yl~~ki~~Ake~l~~   58 (65)
T 2guz_B            5 ESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGG---SFYLQSKVYRAAERLKW   58 (65)
T ss_dssp             HHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTC---CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHHHH
Confidence            45889999999   99999999999999999999974   44566889999999864

>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}

Probab=97.59  E-value=7.5e-05  Score=63.88  Aligned_cols=44  Identities=27%  Similarity=0.594  Sum_probs=37.8

Q ss_pred             EEEEEcCCCCCCCCEEEEccccCCCCCCCCCccEEEEEEeeccccc
Q 011450          237 SMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGI  282 (485)
Q Consensus       237 ~l~V~IP~Gv~dG~~Ir~~G~Gd~~~~g~~~GDL~v~I~v~~h~~F  282 (485)
                      .++|.||+|+++|++++++|+|.+. .+ ..|||||+++|.-....
T Consensus        39 ~~~v~ip~g~~~G~~~rl~G~G~p~-~~-~~GDL~v~~~V~~P~~L   82 (109)
T 3i38_A           39 SILLTVPPGSQAGQRLRIKGKGLVS-KT-HTGDLFAVIKIVMPTKP   82 (109)
T ss_dssp             CEEEEECTTCCTTCEEEETTCSCBC-SS-CBCCEEEEEEECCCSSC
T ss_pred             CEEEeeCCCcCcCeEEEECCccCCC-CC-CCcCEEEEEEEECCCCC
Confidence            4789999999999999999999986 33 79999999999855443

>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}

Probab=97.50  E-value=6.6e-05  Score=65.36  Aligned_cols=46  Identities=24%  Similarity=0.343  Sum_probs=36.2

Q ss_pred             eEEEEEcCCC--CCCCCEEEEccccCCCCCCCCCccEEEEEEeecccc
Q 011450          236 RSMKVVIPPG--VSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQG  281 (485)
Q Consensus       236 k~l~V~IP~G--v~dG~~Ir~~G~Gd~~~~g~~~GDL~v~I~v~~h~~  281 (485)
                      +.++|.||+|  +++|++++++|+|.+...+...|||||+++|.-...
T Consensus        34 ~~~~v~ip~g~v~~~G~~~rl~G~Gmp~~~~~~~GDL~V~~~V~~P~~   81 (121)
T 1xao_A           34 DWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKFPEN   81 (121)
T ss_dssp             CEEEEEECTTSCCCTTCEEEETTCSCC------CCCEEEEEEEECCCT
T ss_pred             CEEEEEeCCCCeeCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCC
Confidence            5688999999  999999999999997644446899999999986554

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=97.41  E-value=3.4e-05  Score=57.57  Aligned_cols=30  Identities=30%  Similarity=0.798  Sum_probs=26.6

Q ss_pred             EeecccCCCCcEEEeecccccCCCceeeec
Q 011450          206 VSTCSKCGGDGKIIIDHCRRCGGNGEVQSK  235 (485)
Q Consensus       206 ~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~  235 (485)
                      .++|+.|+|+|+++.++|+.|+|.|++.+.
T Consensus         9 ~~~C~~C~GsG~~i~~~C~~C~G~G~v~~~   38 (53)
T 3lcz_A            9 ETTCPNCNGSGREEPEPCPKCLGKGVILTA   38 (53)
T ss_dssp             EEECTTTTTSCEETTEECTTTTTSSEEECH
T ss_pred             eccCcCCcccccCCCCcCCCCCCcEEEEEE
Confidence            578999999999999999999999987654

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=97.40  E-value=8.4e-05  Score=59.41  Aligned_cols=47  Identities=30%  Similarity=0.824  Sum_probs=36.9

Q ss_pred             CCcccCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEe--------ecccccCCCceee
Q 011450          178 NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIII--------DHCRRCGGNGEVQ  233 (485)
Q Consensus       178 ~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~--------~~C~~C~G~G~v~  233 (485)
                      .....|+.|+|+|....         ....+|+.|+|+|.++.        ..|+.|+|.|.+.
T Consensus         9 ~~~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~   63 (79)
T 1exk_A            9 PTLEECDVCHGSGAKPG---------TQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLI   63 (79)
T ss_dssp             CCEEECGGGTTTSBCSS---------SCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEEC
T ss_pred             ccceECCCCcccccCCC---------ccCCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEEC
Confidence            45679999999997431         11368999999998864        4799999999764

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.61  E-value=0.0013  Score=55.33  Aligned_cols=46  Identities=43%  Similarity=1.029  Sum_probs=35.0

Q ss_pred             CCcccCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEe--------ecccccCCCcee
Q 011450          178 NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIII--------DHCRRCGGNGEV  232 (485)
Q Consensus       178 ~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~--------~~C~~C~G~G~v  232 (485)
                      .....|+.|+|+|.....         ...+|+.|+|+|.+..        ..|+.|+|.|.+
T Consensus        26 ~~~~~C~~C~G~G~~~g~---------~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~   79 (104)
T 2ctt_A           26 NIMDTCERCNGKGNEPGT---------KVQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSI   79 (104)
T ss_dssp             SCCEECSSSSSSSSCTTC---------CCEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEE
T ss_pred             eeeeECCCCcCCccCCCC---------CCccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceE
Confidence            456789999999974211         1358999999997643        359999999975

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=96.61  E-value=0.00082  Score=50.06  Aligned_cols=27  Identities=33%  Similarity=0.779  Sum_probs=17.0

Q ss_pred             eecccCCCCcEEEeecccccCCCceee
Q 011450          207 STCSKCGGDGKIIIDHCRRCGGNGEVQ  233 (485)
Q Consensus       207 ~~C~~C~G~G~~i~~~C~~C~G~G~v~  233 (485)
                      .+|+.|+|+|.++...|+.|+|.|.+.
T Consensus        10 ~~C~~C~GsG~~~~~~C~~C~G~G~v~   36 (53)
T 2bx9_A           10 VACPKCERAGEIEGTPCPACSGKGVIL   36 (53)
T ss_dssp             EECTTTTTSSEETTEECTTTTTSSEEE
T ss_pred             ccCCCCcceeccCCCCCccCCCCccEE
Confidence            456666666666655666666666553

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=95.64  E-value=0.0054  Score=45.59  Aligned_cols=30  Identities=27%  Similarity=0.677  Sum_probs=24.1

Q ss_pred             cccCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEee
Q 011450          180 IQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID  221 (485)
Q Consensus       180 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~  221 (485)
                      ..+|+.|+|+|.++.            .+|+.|+|.|.++..
T Consensus         9 ~~~C~~C~GsG~~~~------------~~C~~C~G~G~v~~~   38 (53)
T 2bx9_A            9 EVACPKCERAGEIEG------------TPCPACSGKGVILTA   38 (53)
T ss_dssp             EEECTTTTTSSEETT------------EECTTTTTSSEEECH
T ss_pred             cccCCCCcceeccCC------------CCCccCCCCccEEEE
Confidence            458999999998641            579999999998763

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=95.24  E-value=0.0088  Score=44.43  Aligned_cols=30  Identities=33%  Similarity=0.716  Sum_probs=24.1

Q ss_pred             cccCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEee
Q 011450          180 IQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID  221 (485)
Q Consensus       180 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~  221 (485)
                      ..+|+.|+|+|.++.            .+|+.|+|.|.+...
T Consensus         9 ~~~C~~C~GsG~~i~------------~~C~~C~G~G~v~~~   38 (53)
T 3lcz_A            9 ETTCPNCNGSGREEP------------EPCPKCLGKGVILTA   38 (53)
T ss_dssp             EEECTTTTTSCEETT------------EECTTTTTSSEEECH
T ss_pred             eccCcCCcccccCCC------------CcCCCCCCcEEEEEE
Confidence            358999999998653            479999999987553

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=90.24  E-value=0.12  Score=56.66  Aligned_cols=50  Identities=16%  Similarity=0.195  Sum_probs=39.8

Q ss_pred             ccccCCCcchhccCCCCCCH--HHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhh
Q 011450           39 IRAAGTDYYSTLNVRQNATL--QEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEV   95 (485)
Q Consensus        39 ~~~~~~d~Y~iLgv~~~As~--~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYev   95 (485)
                      +....+|||.+||++.++..  .+|++|||+||+..+++       .+++..|..|+.|
T Consensus       624 ~~~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~-------~~r~~lvd~a~~v  675 (681)
T 2pzi_A          624 LKDNKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ-------RHRYTLVDMANKV  675 (681)
T ss_dssp             HTSCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH-------HHHHHHHHHHHHH
T ss_pred             HHccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh-------HHHHHHHHHhccc
Confidence            34567789999999776655  67999999999975544       4789999999876

>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}

Probab=81.35  E-value=0.099  Score=57.50  Aligned_cols=51  Identities=18%  Similarity=0.383  Sum_probs=31.5

Q ss_pred             cccCCCCCCCCC---CcccCCCCCCCCeeee--------eeecCCcee-eeEeecccCCCCcE
Q 011450          167 IRCGGTGAKSSN---CIQSCKACWGRGGVLK--------TQRTPFGLI-SQVSTCSKCGGDGK  217 (485)
Q Consensus       167 i~C~GtG~~~~~---~~~~C~~C~G~G~~~~--------~~~~~~g~~-~~~~~C~~C~G~G~  217 (485)
                      ..|+|+|++.+.   .+.+|++|+|+.....        ......|.| +....|..||..+.
T Consensus       195 ~tCHGsGA~~Gt~~~~~~tC~tCHGs~~~~~~~~~~~~~iH~iH~G~fP~~~~~C~~CH~~~~  257 (669)
T 3pmq_A          195 NSCHSNLAFHGGRYNQVETCVTCHNSKKVSNAADIFPQMIHSKHLTGFPQSISNCQTCHADNP  257 (669)
T ss_dssp             HHHHSSCCTTTTTSCSSSCSTTTSSTTTCCCSSCSHHHHHHHHTTSSCSSCTTCCTTTSCCCT
T ss_pred             CCCCCCCCcCCccCcCCccCCCCCCCcccCCccccccceeeeeeccCCCCccCcchhhcCCcc
Confidence            349999999887   6789999999942110        001111222 22357888887764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	485
d1xbla_	75	a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain	9e-22
d1hdja_	77	a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9	2e-21
d1wjza_	94	a.2.3.1 (A:) CSL-type zinc finger-containing prote	3e-17
d1fpoa1	76	a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma	3e-17
d1nz6a_	98	a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T	2e-16
d1fafa_	79	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	6e-16
d1iura_	88	a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human	1e-15
d1c3ga2	90	b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Ba	6e-15
d1gh6a_	114	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	1e-13
d1nlta3	74	g.54.1.1 (A:139-212) Mitochondrial protein import	2e-12
d1nlta2	80	b.4.1.1 (A:258-337) Mitochondrial protein import p	1e-11
d1exka_	79	g.54.1.1 (A:) Cysteine-rich domain of the chaperon	5e-11
d1m1qa_	90	a.138.1.3 (A:) Flavocytochrome c3 (respiratory fum	2e-10
d1c3ga1	80	b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Ba	7e-09
d1nlta1	74	b.4.1.1 (A:110-138,A:213-257) Mitochondrial protei	7e-07

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 86.6 bits (214), Expect = 9e-22
 Identities = 37/73 (50%), Positives = 49/73 (67%), Gaps = 1/73 (1%)

Query: 42  AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS-PGAEEKFKEISSAYEVLSDDE 100
           A  DYY  L V + A  +EI+ +Y++LA KYHPD N+    AE KFKEI  AYEVL+D +
Sbjct: 1   AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60

Query: 101 KRSVYDRFGEAGI 113
           KR+ YD++G A  
Sbjct: 61  KRAAYDQYGHAAF 73

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.5 bits (211), Expect = 2e-21
 Identities = 43/74 (58%), Positives = 56/74 (75%)

Query: 43  GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKR 102
           G DYY TL + + A+ +EIK +YR+ A +YHPD NK PGAEEKFKEI+ AY+VLSD  KR
Sbjct: 2   GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKR 61

Query: 103 SVYDRFGEAGITGE 116
            ++DR+GE G+ G 
Sbjct: 62  EIFDRYGEEGLKGS 75

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 74.7 bits (183), Expect = 3e-17
 Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 7/94 (7%)

Query: 29  GNNRSHRRGMIRAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEK--- 85
           G++ S    + +    D+YS L    +A + ++K  Y+KL   YHPD   +         
Sbjct: 1   GSSGSSGMALEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEE 60

Query: 86  ----FKEISSAYEVLSDDEKRSVYDRFGEAGITG 115
               F EI  A+++L ++E +  YD       +G
Sbjct: 61  CMQKFIEIDQAWKILGNEETKKKYDLQRSGPSSG 94

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 73.9 bits (181), Expect = 3e-17
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 8/70 (11%)

Query: 45  DYYSTLNVRQNATL--QEIKTSYRKLARKYHPDINKSPGAEEK------FKEISSAYEVL 96
           DY++   +     L  Q +   ++ L R+YHPD   S    E+         I+ A++ L
Sbjct: 2   DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61

Query: 97  SDDEKRSVYD 106
                R+ Y 
Sbjct: 62  RHPLMRAEYL 71

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 72.3 bits (177), Expect = 2e-16
 Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 4/67 (5%)

Query: 43  GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGA----EEKFKEISSAYEVLSD 98
           G   +  + +    T +++K  YRK     HPD           +  F E++ A+    +
Sbjct: 32  GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFEN 91

Query: 99  DEKRSVY 105
             ++ +Y
Sbjct: 92  QGQKPLY 98

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

 Score = 70.4 bits (172), Expect = 6e-16
 Identities = 12/76 (15%), Positives = 28/76 (36%), Gaps = 5/76 (6%)

Query: 36  RGMIRAAGTDYYSTLNVRQNA--TLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAY 93
           R + RA        L + +        ++ +Y++ +   HPD     G+    +E++S +
Sbjct: 3   RVLSRADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKG---GSHALMQELNSLW 59

Query: 94  EVLSDDEKRSVYDRFG 109
                +      +  G
Sbjct: 60  GTFKTEVYNLRMNLGG 75

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.7 bits (170), Expect = 1e-15
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 5/70 (7%)

Query: 45  DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS--PGAEEKFKEISSAYEVLSDDEKR 102
           +  S +         E K   R+L  K+HPD N      A E FK + +    L   EK+
Sbjct: 17  EVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRL---EKQ 73

Query: 103 SVYDRFGEAG 112
           +  D+  +  
Sbjct: 74  AFLDQNADRA 83

>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 90

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.1 bits (166), Expect = 6e-15
 Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 1/87 (1%)

Query: 284 RDGLNLFSKISVDYTEAILGTSMEVETVEGMKD-LRIPSGVQPGDTVKLQQMGVPDINNP 342
           RDG +L   + + + E++LG S  ++T++G    L     VQP  T      G+P   NP
Sbjct: 4   RDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNP 63

Query: 343 SVRGDHLFIVNVLIPKDISDPERALVE 369
           S RG+ +    V  P  ++D ++  ++
Sbjct: 64  SQRGNLIVKYKVDYPISLNDAQKRAID 90

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Length = 114

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

 Score = 64.8 bits (157), Expect = 1e-13
 Identities = 21/105 (20%), Positives = 44/105 (41%), Gaps = 10/105 (9%)

Query: 39  IRAAGTDYYSTLNVRQNA--TLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVL 96
           +R         L + ++A   +  ++ +Y K  +++HPD        EK K++++ Y+ +
Sbjct: 3   MREESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE---EKMKKMNTLYKKM 59

Query: 97  SDDEKRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYSAFFGGSD 141
            D  K +    FG       +D     + G D +E +   F   +
Sbjct: 60  EDGVKYAHQPDFGG-----FWDATEIPTYGTDEWEQWWNAFNEEN 99

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 74

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.1 bits (145), Expect = 2e-12
 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 168 RCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIII--DHCRR 225
            C G G K    ++ C +C G+G    T++    +    + C  C G G II   D C+ 
Sbjct: 7   ECEGRGGKK-GAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKS 65

Query: 226 CGGNGEVQ 233
           C G     
Sbjct: 66  CNGKKVEN 73

>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 80

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.4 bits (141), Expect = 1e-11
 Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 4/78 (5%)

Query: 284 RDGLNLFSKISVDYTEAILGTSMEVETVEGM---KDLRIPSGVQPGDTVKLQQMGVPDIN 340
           RDG +L  +  +D   AI G    +E V G      +     + PG    ++  G+P   
Sbjct: 4   RDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPK 63

Query: 341 NPSVRGDHLFIVNVLIPK 358
                G+ +    +  P+
Sbjct: 64  YGG-YGNLIIKFTIKDPE 80

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]} Length = 79

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

 Score = 56.3 bits (135), Expect = 5e-11
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 168 RCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCG 227
            C G+GAK     Q+C  C G        +   G  +   TC  C G G +I D C +C 
Sbjct: 16  VCHGSGAKPGTQPQTCPTCHGS----GQVQMRQGFFAVQQTCPHCQGRGTLIKDPCNKCH 71

Query: 228 GNGEVQ 233
           G+G V+
Sbjct: 72  GHGRVE 77

>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]} Length = 90

class: All alpha proteins
fold: Multiheme cytochromes
superfamily: Multiheme cytochromes
family: Di-heme elbow motif
domain: Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain
species: Shewanella oneidensis [TaxId: 70863]

 Score = 55.2 bits (132), Expect = 2e-10
 Identities = 11/70 (15%), Positives = 20/70 (28%), Gaps = 3/70 (4%)

Query: 169 CGGTGAKSSNCI---QSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRR 225
           C   G  S++       C++C G+   +     P       + C             C  
Sbjct: 17  CHKDGTPSADGAFEFAQCQSCHGKLSEMDAVHKPHDGNLVCADCHAVHDMNVGQKPTCES 76

Query: 226 CGGNGEVQSK 235
           C  +G   + 
Sbjct: 77  CHDDGRTSAS 86

>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 80

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.3 bits (120), Expect = 7e-09
 Identities = 10/67 (14%), Positives = 22/67 (32%), Gaps = 3/67 (4%)

Query: 212 CGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLF 271
             G  K      +   G  E   K  + + + PG   G  +  + +G+++ +      L 
Sbjct: 15  FVGKKKSFKIGRKGPHGASE---KTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQ 71

Query: 272 VALHVDE 278
             +    
Sbjct: 72  FVIQEKS 78

>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 74

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.7 bits (105), Expect = 7e-07
 Identities = 12/71 (16%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 284 RDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPS 343
           + G ++  +IS    E   G + ++     + ++ +  G++ G  +  +       +   
Sbjct: 2   QRGKDIKHEISASLEELYKGRTAKLALNRKILEVHVEPGMKDGQRIVFKGEADQAPDVI- 60

Query: 344 VRGDHLFIVNV 354
             GD +FIV+ 
Sbjct: 61  -PGDVVFIVSE 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	485
d1c3ga2	90	Heat shock protein 40 Sis1 {Baker's yeast (Sacchar	99.89
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.89
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	99.8
d1nlta2	80	Mitochondrial protein import protein mas5 (Hsp40,	99.79
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	99.78
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	99.67
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.64
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.61
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.6
d1nlta1	74	Mitochondrial protein import protein mas5 (Hsp40,	99.44
d1c3ga1	80	Heat shock protein 40 Sis1 {Baker's yeast (Sacchar	99.32
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	99.12
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	99.08
d1nlta1	74	Mitochondrial protein import protein mas5 (Hsp40,	98.91
d1c3ga1	80	Heat shock protein 40 Sis1 {Baker's yeast (Sacchar	98.86
d1nlta2	80	Mitochondrial protein import protein mas5 (Hsp40,	97.29
d1c3ga2	90	Heat shock protein 40 Sis1 {Baker's yeast (Sacchar	97.17
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	96.77
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	96.69
d1m1qa_	90	Flavocytochrome c3 (respiratory fumarate reductase	95.93

>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=2.3e-24  Score=178.06  Aligned_cols=89  Identities=28%  Similarity=0.505  Sum_probs=84.7

Q ss_pred             cccccccceEEEEEecchhhccCceEEEEccCCe-EEEEeCCCCCCCCEEEEcCCCCCCCCCCCCCccEEEEEEEEcCCC
Q 011450          281 GIHRDGLNLFSKISVDYTEAILGTSMEVETVEGM-KDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKD  359 (485)
Q Consensus       281 ~F~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~-~~l~Ip~g~q~G~~irl~g~G~P~~~~~~~rGDL~V~~~V~~P~~  359 (485)
                      .|+|+|+||+++++||+.||++|++++|+|+||+ +.|+||+++++|++++|+|+|||..++++.+|||||+|+|++|+.
T Consensus         1 ~F~R~G~DL~~~~~I~~~eal~G~~~~i~~~dG~~i~i~ip~~~~~g~~~~i~g~G~p~~~~~~~rGdL~V~~~v~~P~~   80 (90)
T d1c3ga2           1 NFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPIS   80 (90)
T ss_dssp             SEEEETTEEEEEECCBHHHHHHCEEEEEECSSSCEEEEEESSCCCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBCCSS
T ss_pred             CCeEeCCeEEEEEEeCHHHHhcCCeEEEecccccceecccccccccccccccCCCCCCcCCCCCCcCCEEEEEEEEcCCC
Confidence            4999999999999999999999999999999995 799999999999999999999999877778999999999999999


Q ss_pred             CChhHHHHHH
Q 011450          360 ISDPERALVE  369 (485)
Q Consensus       360 ls~~q~~ll~  369 (485)
                      ||++|+++||
T Consensus        81 ls~~qk~~lE   90 (90)
T d1c3ga2          81 LNDAQKRAID   90 (90)
T ss_dssp             CCTTHHHHTC
T ss_pred             CCHHHHHhhC
Confidence            9999999875

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=7.2e-24  Score=169.35  Aligned_cols=72  Identities=50%  Similarity=0.860  Sum_probs=67.6

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCC-ccHHHHHHHHHHHHhhhccccccchhccccccCcC
Q 011450           43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS-PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGIT  114 (485)
Q Consensus        43 ~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~-~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~  114 (485)
                      .+|||+||||+++||.+|||+|||+|+++||||+|+. +.++++|++|++||+||+||.+|+.||+||+++++
T Consensus         2 k~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~e   74 (75)
T d1xbla_           2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFE   74 (75)
T ss_dssp             CCCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTTCHHHHHHHHHHHHHHHTTSSHHHHHHHHHTTSSCC
T ss_pred             CCCHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHhCccccC
Confidence            5799999999999999999999999999999999974 67888999999999999999999999999988764

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=6.2e-24  Score=170.53  Aligned_cols=74  Identities=58%  Similarity=1.024  Sum_probs=70.8

Q ss_pred             cCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhhhccccccchhccccccCcCc
Q 011450           42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITG  115 (485)
Q Consensus        42 ~~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~~  115 (485)
                      +.+|||+||||+++||.+||++||++|++++|||+++++.+.++|+.|++||+||+||.+|+.||+||++++++
T Consensus         1 m~kdyY~iLgv~~~as~~eIk~ay~~l~~~~hPD~~~~~~~~~~~~~i~~Ay~vLsdp~~R~~YD~~g~~~~~g   74 (77)
T d1hdja_           1 MGKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLKG   74 (77)
T ss_dssp             CCCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGCCS
T ss_pred             CCCChHHHcCCCCCcCHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcC
Confidence            46899999999999999999999999999999999999999999999999999999999999999999998864

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=1.3e-20  Score=156.59  Aligned_cols=69  Identities=32%  Similarity=0.582  Sum_probs=62.9

Q ss_pred             ccCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCC-------ccHHHHHHHHHHHHhhhccccccchhcccc
Q 011450           41 AAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS-------PGAEEKFKEISSAYEVLSDDEKRSVYDRFG  109 (485)
Q Consensus        41 ~~~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~-------~~a~e~F~~I~~AYevLsDp~kR~~YD~~G  109 (485)
                      .+.+|||+||||+++|+.+|||+||++|+++||||+|+.       +.++++|+.|++||+||+||++|+.||...
T Consensus        13 ~~~~d~Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~~YD~~~   88 (94)
T d1wjza_          13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQR   88 (94)
T ss_dssp             SSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHS
T ss_pred             hhccChHHHcCCCCCcCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHcc
Confidence            346899999999999999999999999999999999863       347789999999999999999999999753

>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=5.2e-20  Score=148.32  Aligned_cols=77  Identities=25%  Similarity=0.393  Sum_probs=71.7

Q ss_pred             cccccccceEEEEEecchhhccCceEEEEccCCe-EEEEeCCC--CCCCCEEEEcCCCCCCCCCCCCCccEEEEEEEEcC
Q 011450          281 GIHRDGLNLFSKISVDYTEAILGTSMEVETVEGM-KDLRIPSG--VQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIP  357 (485)
Q Consensus       281 ~F~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~-~~l~Ip~g--~q~G~~irl~g~G~P~~~~~~~rGDL~V~~~V~~P  357 (485)
                      .|+|+|+||+++++|++.||++|++++|+|+||. ++++||++  +++|++++|+|+|||..++ +.+|||||+|+|++|
T Consensus         1 tF~R~G~dL~~~~~I~~~eal~G~~~~i~~~dg~~~~i~i~~~~~~~~g~~~~i~g~G~p~~~~-~~~GDL~v~~~V~~P   79 (80)
T d1nlta2           1 SFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKY-GGYGNLIIKFTIKDP   79 (80)
T ss_dssp             SCEEETTEEEEEEEEEHHHHHHCBCCEEECSSSCEEECCBCTTTTCSTTCEEEETTCSCBCSSS-CSBCCEEEEEEEECC
T ss_pred             CcEEeCCEEEEEEEeCHHHHhCCCEEEEEecCcceEEEEeCCCCCcCCCCEEEecCCCCCCCCc-CCcCcEEEEEEEEcC
Confidence            4899999999999999999999999999999996 67888876  9999999999999999865 579999999999999


Q ss_pred             C
Q 011450          358 K  358 (485)
Q Consensus       358 ~  358 (485)
                      +
T Consensus        80 k   80 (80)
T d1nlta2          80 E   80 (80)
T ss_dssp             C
T ss_pred             C
Confidence            6

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=99.78  E-value=7e-21  Score=163.63  Aligned_cols=68  Identities=22%  Similarity=0.407  Sum_probs=62.4

Q ss_pred             cCCCcchhccCCCCC--CHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhhhccccccchhccccccC
Q 011450           42 AGTDYYSTLNVRQNA--TLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAG  112 (485)
Q Consensus        42 ~~~d~Y~iLgv~~~A--s~~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~  112 (485)
                      ...|||+||||+++|  +.++||+|||+||++||||+|+++   ++|++|++||+||+||++|+.||.+|...
T Consensus         6 ~~~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~~---e~F~~I~~AY~vLsd~~kR~~YD~~~~~~   75 (114)
T d1gh6a_           6 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE---EKMKKMNTLYKKMEDGVKYAHQPDFGGFW   75 (114)
T ss_dssp             HHHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTT---TTTHHHHHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccchhhH---HHHHHHHHHHHHhCCHHHHHHHhccCCCC
Confidence            367999999999999  788999999999999999999754   68999999999999999999999988654

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=99.67  E-value=7.2e-18  Score=135.25  Aligned_cols=65  Identities=12%  Similarity=0.234  Sum_probs=59.4

Q ss_pred             cCCCcchhccCCCCC--CHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhhhccccccchhcccc
Q 011450           42 AGTDYYSTLNVRQNA--TLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFG  109 (485)
Q Consensus        42 ~~~d~Y~iLgv~~~A--s~~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYevLsDp~kR~~YD~~G  109 (485)
                      ...+||+||||++++  +.+|||+|||+|+++||||++.   +.++|++|++||++|+|+.+|..||.-+
T Consensus         9 ~~~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~g---~~e~~~~in~Ay~~L~d~~~r~~~~~~~   75 (79)
T d1fafa_           9 DKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGG---SHALMQELNSLWGTFKTEVYNLRMNLGG   75 (79)
T ss_dssp             HHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSC---CHHHHHHHHHHHHHHHHHHHHHTTCCSS
T ss_pred             HHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccCC---CHHHHHHHHHHHHHHCCHHHHHHHccCC
Confidence            457999999999998  9999999999999999999984   4579999999999999999999999743

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=2.5e-17  Score=131.10  Aligned_cols=64  Identities=25%  Similarity=0.409  Sum_probs=56.7

Q ss_pred             CCcchhccCCCCC--CHHHHHHHHHHHHHHhCCCCCCCc------cHHHHHHHHHHHHhhhccccccchhcc
Q 011450           44 TDYYSTLNVRQNA--TLQEIKTSYRKLARKYHPDINKSP------GAEEKFKEISSAYEVLSDDEKRSVYDR  107 (485)
Q Consensus        44 ~d~Y~iLgv~~~A--s~~eIk~AYr~la~k~HPD~n~~~------~a~e~F~~I~~AYevLsDp~kR~~YD~  107 (485)
                      .|||++|||++++  +.+|||+|||+|+++||||++...      .+++.|+.|++||+||+||.+|+.|+.
T Consensus         1 lnyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R~~Yll   72 (76)
T d1fpoa1           1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLL   72 (76)
T ss_dssp             CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred             CChHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            4899999999965  589999999999999999997532      366789999999999999999999974

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=8.1e-17  Score=131.66  Aligned_cols=65  Identities=25%  Similarity=0.303  Sum_probs=58.1

Q ss_pred             CCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCC--ccHHHHHHHHHHHHhhhccccccchhcccccc
Q 011450           44 TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS--PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEA  111 (485)
Q Consensus        44 ~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~--~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~  111 (485)
                      +|+|+||+|+.+||.+|||+|||+|+++||||+|++  ..|+++|++|++||++|++   ++.||++...
T Consensus        16 ~~~y~iL~v~~~as~~eIKkAYrrl~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~~---~~~~d~~~~~   82 (88)
T d1iura_          16 KEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEK---QAFLDQNADR   82 (88)
T ss_dssp             HHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHH---HTTCSSSSSC
T ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHH---HHHhhccchH
Confidence            799999999999999999999999999999999985  3588999999999999974   6777776554

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.60  E-value=1.1e-16  Score=133.44  Aligned_cols=63  Identities=22%  Similarity=0.422  Sum_probs=58.2

Q ss_pred             CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc----HHHHHHHHHHHHhhhccccccchh
Q 011450           43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPG----AEEKFKEISSAYEVLSDDEKRSVY  105 (485)
Q Consensus        43 ~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~~~----a~e~F~~I~~AYevLsDp~kR~~Y  105 (485)
                      ..++|++|||+..||.+|||+|||+++++||||+++++.    |++.|+.|++||++|+||.+|+.|
T Consensus        32 ~~~~y~~Lgl~~~~t~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~I~~Ay~~L~d~~~R~~Y   98 (98)
T d1nz6a_          32 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY   98 (98)
T ss_dssp             TCCSCCCCCGGGCCSHHHHHHHHHHHHHHSCHHHHTTSTTHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred             cccCCeecCCCccCCHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHCCHHHHhcC
Confidence            457899999999999999999999999999999987543    678999999999999999999998

>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.44  E-value=1.5e-13  Score=108.50  Aligned_cols=72  Identities=17%  Similarity=0.297  Sum_probs=66.0

Q ss_pred             ccccceEEEEEecchhhccCceEEEEccCCeEEEEeCCCCCCCCEEEEcCCCCCCCCCCCCCccEEEEEEEEcC
Q 011450          284 RDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIP  357 (485)
Q Consensus       284 R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~irl~g~G~P~~~~~~~rGDL~V~~~V~~P  357 (485)
                      |+|.|++++++|||.||++|+++.|.+..+.++|+||+|+++|++++++|+|.+..+  +.+|||+|++++.-+
T Consensus         2 rkg~di~~~l~isleea~~G~~~~~~~~~~~~~i~Ip~G~~~G~~ir~~g~G~~~~~--~~~GDl~v~i~~~pH   73 (74)
T d1nlta1           2 QRGKDIKHEISASLEELYKGRTAKLALNRKILEVHVEPGMKDGQRIVFKGEADQAPD--VIPGDVVFIVSERPH   73 (74)
T ss_dssp             CBCCCEEEEEEECTTHHHHCEEEEEEEEEEEEEEEECTTCCTTCEEEETTCSCCCTT--CBCCCEEEEEEECCC
T ss_pred             CCCCCEEEEEEecHHHHHhhcccceeecCccEEEEecccccCCeEEEecCCcCCCCC--CCCCCEEEEEEecCC
Confidence            789999999999999999999999999888899999999999999999999998754  468999999998644

>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.32  E-value=9.4e-13  Score=105.20  Aligned_cols=71  Identities=14%  Similarity=0.229  Sum_probs=63.3

Q ss_pred             eecccCCCCcEEEeecccccCCCceeeeceEEEEEcCCCCCCCCEEEEccccCCCCCCCCCccEEEEEEeeccc
Q 011450          207 STCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQ  280 (485)
Q Consensus       207 ~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~dG~~Ir~~G~Gd~~~~g~~~GDL~v~I~v~~h~  280 (485)
                      +.-..+.|+.+.+...|..|.|.+   +.++++|.||||+++|++|+|+|+|++.+.++.+|||+|+|++++||
T Consensus        10 tLee~~~G~~k~i~~~r~~~~g~~---~~~~~~v~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~~~i~~~~HP   80 (80)
T d1c3ga1          10 SLEDLFVGKKKSFKIGRKGPHGAS---EKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHP   80 (80)
T ss_dssp             CHHHHHHTCEEEEEEEEEETTTEE---EEEEEEEECCTTCCTTCEEEESSCSSBCSSSSCBCEEEEEEEECCCS
T ss_pred             EHHHHhCCCceEeecceecccCCC---ceEEEEEEECCCCCCCcEEEECCccccCcCCCCCCCEEEEEEeCCCC
Confidence            445678888888888888898865   46789999999999999999999999988788999999999999998

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=99.12  E-value=3.5e-11  Score=95.78  Aligned_cols=66  Identities=36%  Similarity=0.754  Sum_probs=56.4

Q ss_pred             cccccCCCCCCCCCCcccCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEeecccccCCCceeee
Q 011450          165 LDIRCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQS  234 (485)
Q Consensus       165 ~di~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~  234 (485)
                      ..-.|+|+|++.+..+.+|+.|+|+|++..    ..+++++.++|+.|+|+|+++.++|..|+|.|++++
T Consensus        13 ~C~~C~G~G~~~g~~~~~C~~C~G~G~v~~----~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~k   78 (79)
T d1exka_          13 ECDVCHGSGAKPGTQPQTCPTCHGSGQVQM----RQGFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRVER   78 (79)
T ss_dssp             ECGGGTTTSBCSSSCCEECTTTTTSSEEEE----EETTEEEEEECTTTTTSSEECSSBCGGGTTSSEEEC
T ss_pred             cCCCCcCcccCCCccceeCCCccceeEEEE----ecccceeeEECcccCcceeECCCCCCCCCCceEeec
Confidence            344599999999888999999999998643    235667778999999999999999999999998865

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.08  E-value=4.5e-11  Score=93.98  Aligned_cols=67  Identities=28%  Similarity=0.632  Sum_probs=57.4

Q ss_pred             cccCCCCCCCCCCcccCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEe--ecccccCCCceeee
Q 011450          167 IRCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIII--DHCRRCGGNGEVQS  234 (485)
Q Consensus       167 i~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~--~~C~~C~G~G~v~~  234 (485)
                      -.|+|+|++.+. ..+|+.|+|+|.++...++.++++++..+|+.|+|+|+++.  ++|..|+|.|+++|
T Consensus         6 ~~C~G~G~~~~~-~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~E   74 (74)
T d1nlta3           6 KECEGRGGKKGA-VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENE   74 (74)
T ss_dssp             TTTTTCSBSTTT-CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCTTSBCSSSTTSCEEEE
T ss_pred             cCCcccccCCCC-CCCCCCCcceeeeeEEEEecCcEEEEEEECccCccceEEeCCCCCCCCCCCeeEeCC
Confidence            349999998764 67899999999999888888877777789999999999875  46999999998764

>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.91  E-value=1e-09  Score=86.02  Aligned_cols=46  Identities=17%  Similarity=0.479  Sum_probs=42.4

Q ss_pred             eceEEEEEcCCCCCCCCEEEEccccCCCCCCCCCccEEEEEEeeccc
Q 011450          234 SKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQ  280 (485)
Q Consensus       234 ~~k~l~V~IP~Gv~dG~~Ir~~G~Gd~~~~g~~~GDL~v~I~v~~h~  280 (485)
                      ..+.++|+||||+.+|++|+|+|+|++.+ ++.+|||+|+|+++||.
T Consensus        29 ~~~~~~i~Ip~G~~~G~~ir~~g~G~~~~-~~~~GDl~v~i~~~pHk   74 (74)
T d1nlta1          29 NRKILEVHVEPGMKDGQRIVFKGEADQAP-DVIPGDVVFIVSERPHK   74 (74)
T ss_dssp             EEEEEEEEECTTCCTTCEEEETTCSCCCT-TCBCCCEEEEEEECCCS
T ss_pred             cCccEEEEecccccCCeEEEecCCcCCCC-CCCCCCEEEEEEecCCC
Confidence            45789999999999999999999999975 67899999999999995

>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.86  E-value=3.1e-09  Score=84.26  Aligned_cols=70  Identities=13%  Similarity=0.248  Sum_probs=58.4

Q ss_pred             cceEEEEEecchhhccCceEEEEc----cCC-----eEEEEeCCCCCCCCEEEEcCCCCCCCCCCCCCccEEEEEEEEcC
Q 011450          287 LNLFSKISVDYTEAILGTSMEVET----VEG-----MKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIP  357 (485)
Q Consensus       287 ~DL~~~~~Isl~eAllG~~i~V~t----ldG-----~~~l~Ip~g~q~G~~irl~g~G~P~~~~~~~rGDL~V~~~V~~P  357 (485)
                      +||.+.+.|||.||+.|++..|..    .+|     .+.|.||||+.+|++++++|+|....++ +.+|||+|+|+++-+
T Consensus         1 e~v~~~l~vtLee~~~G~~k~i~~~r~~~~g~~~~~~~~v~Ip~G~~~G~~i~~~g~G~~~~~~-~~~GDl~~~i~~~~H   79 (80)
T d1c3ga1           1 ETVQVNLPVSLEDLFVGKKKSFKIGRKGPHGASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQT-GRRKTLQFVIQEKSH   79 (80)
T ss_dssp             CEEEEEEEECHHHHHHTCEEEEEEEEEETTTEEEEEEEEEECCTTCCTTCEEEESSCSSBCSSS-SCBCEEEEEEEECCC
T ss_pred             CCEEEEeEEEHHHHhCCCceEeecceecccCCCceEEEEEEECCCCCCCcEEEECCccccCcCC-CCCCCEEEEEEeCCC
Confidence            478999999999999999876653    344     2688999999999999999999876553 468999999998753

>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.29  E-value=0.00018  Score=55.90  Aligned_cols=43  Identities=26%  Similarity=0.377  Sum_probs=37.8

Q ss_pred             ceEEEEEcCCC--CCCCCEEEEccccCCCCCCCCCccEEEEEEee
Q 011450          235 KRSMKVVIPPG--VSNGATMQIRGEGNFDRRRSLAGDLFVALHVD  277 (485)
Q Consensus       235 ~k~l~V~IP~G--v~dG~~Ir~~G~Gd~~~~g~~~GDL~v~I~v~  277 (485)
                      .+.++|.||++  +++|++++++|+|.+...++..|||+|+++|+
T Consensus        33 g~~~~i~i~~~~~~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~V~   77 (80)
T d1nlta2          33 GDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIK   77 (80)
T ss_dssp             SCEEECCBCTTTTCSTTCEEEETTCSCBCSSSCSBCCEEEEEEEE
T ss_pred             cceEEEEeCCCCCcCCCCEEEecCCCCCCCCcCCcCcEEEEEEEE
Confidence            46788888877  99999999999999877777899999999986

>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.17  E-value=0.00024  Score=56.51  Aligned_cols=48  Identities=23%  Similarity=0.248  Sum_probs=39.1

Q ss_pred             ceEEEEEcCCCCCCCCEEEEccccCCCC-CCCCCccEEEEEEeeccccc
Q 011450          235 KRSMKVVIPPGVSNGATMQIRGEGNFDR-RRSLAGDLFVALHVDEKQGI  282 (485)
Q Consensus       235 ~k~l~V~IP~Gv~dG~~Ir~~G~Gd~~~-~g~~~GDL~v~I~v~~h~~F  282 (485)
                      .+.++|.||+|+++|++++++|+|.+.. ..+..|||+|++++.-...+
T Consensus        33 G~~i~i~ip~~~~~g~~~~i~g~G~p~~~~~~~rGdL~V~~~v~~P~~l   81 (90)
T d1c3ga2          33 GRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPISL   81 (90)
T ss_dssp             SCEEEEEESSCCCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBCCSSC
T ss_pred             ccceecccccccccccccccCCCCCCcCCCCCCcCCEEEEEEEEcCCCC
Confidence            4688999999999999999999998643 34568999999998843333

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=96.77  E-value=0.00037  Score=54.08  Aligned_cols=47  Identities=32%  Similarity=0.822  Sum_probs=35.5

Q ss_pred             CCcccCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEee--------cccccCCCceee
Q 011450          178 NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID--------HCRRCGGNGEVQ  233 (485)
Q Consensus       178 ~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~--------~C~~C~G~G~v~  233 (485)
                      .....|+.|+|+|.....         ...+|+.|+|.|.+...        .|+.|+|.|.+.
T Consensus         9 ~~~~~C~~C~G~G~~~g~---------~~~~C~~C~G~G~v~~~~g~~~~~~~C~~C~G~G~~i   63 (79)
T d1exka_           9 PTLEECDVCHGSGAKPGT---------QPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLI   63 (79)
T ss_dssp             CCEEECGGGTTTSBCSSS---------CCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEEC
T ss_pred             eeeccCCCCcCcccCCCc---------cceeCCCccceeEEEEecccceeeEECcccCcceeEC
Confidence            356789999999964211         13679999999987543        399999999763

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.69  E-value=0.00025  Score=54.49  Aligned_cols=43  Identities=37%  Similarity=0.914  Sum_probs=32.6

Q ss_pred             cccCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEee------------cccccCCCcee
Q 011450          180 IQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID------------HCRRCGGNGEV  232 (485)
Q Consensus       180 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~------------~C~~C~G~G~v  232 (485)
                      ...|+.|+|+|.....          ..+|+.|+|+|.+...            .|+.|.|.|.+
T Consensus         2 ~v~C~~C~G~G~~~~~----------~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~   56 (74)
T d1nlta3           2 QILCKECEGRGGKKGA----------VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDI   56 (74)
T ss_dssp             EEECTTTTTCSBSTTT----------CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSC
T ss_pred             ccCCcCCcccccCCCC----------CCCCCCCcceeeeeEEEEecCcEEEEEEECccCccceEE
Confidence            3579999999964211          2479999999976542            39999999965

>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]}

class: All alpha proteins
fold: Multiheme cytochromes
superfamily: Multiheme cytochromes
family: Di-heme elbow motif
domain: Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain
species: Shewanella oneidensis [TaxId: 70863]

Probab=95.93  E-value=9.4e-05  Score=58.57  Aligned_cols=68  Identities=16%  Similarity=0.346  Sum_probs=49.2

Q ss_pred             ccccCCCCCCCCCC---cccCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEeecccccCCCceee
Q 011450          166 DIRCGGTGAKSSNC---IQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQ  233 (485)
Q Consensus       166 di~C~GtG~~~~~~---~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~  233 (485)
                      +..|++.+......   ..+|..|+|.|......+...+....-+.|..|+|.|..+...|..|++.|++.
T Consensus        14 C~~CH~~~~~~~~~~~~~~~C~~CHg~~~~~~~~~~~h~~~~~c~~CH~~H~~~~~~~~~C~~CH~~gr~~   84 (90)
T d1m1qa_          14 CESCHKDGTPSADGAFEFAQCQSCHGKLSEMDAVHKPHDGNLVCADCHAVHDMNVGQKPTCESCHDDGRTS   84 (90)
T ss_dssp             GGGTSGGGCCCSSSHHHHHHHHHHHCCGGGSCTTTGGGTTTCCGGGTCCTTTSBTTCCCCSTTTCSSCCCH
T ss_pred             CCCcCCCCccccCCCCCCCcCcccCCCceeEeeccccccCccccccCccccCCCCcCCCccccccCCCccc
Confidence            55688877654332   357999999997655444443333344689999999988888999999999764