Citrus Sinensis ID: 011459

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-----
MADVEACSSRDSLENGDGCSLVLELTEDDPLFHKKKKLLNDKGFGVKEQIHLQSSMCPDSISNSLETMLRIGRIIHVDEVELYFGEFDTQMGFYSPRNELETLNSILARVNTLLSRQMHKKMNVWQGLQAAIILKIQEFGNQIKEVARIDKNYTCEKEKCLVQWGESNGVKTKLEIAYVGGAGRGAVAMEDLRVGDIALEIPVSIILSKDLVHKSDMYNVLGKIEGMSSETMLLLWSMKEKHNCGSKFKNYFDSLPKEFHTGLSFGVDAIMALEGTLLLEEIMQAKEHLRTQYDELFPRLCNDYPDIFPPKFYTWEQFLWACELFYSNSMKIIFADGKLRTCLIPIAGFLNHSLNPHIVHYGRVDSATNSLKFPLSRPCNIGEQCCLSYGNFSTSHLITFYGFSPQGDNRYDVIPIDIDVGQADCFEDCPMSNWTTHMVRGTWLSKNHNIFNYGLPSPLLDYLRRVRNPMQYEKTLVIFLSLLHM
ccccccccccccccccccEEEEEccccccHHHHHHHHHHccccccccEEEEcccccccccccHHHHHHHHHHHHHcccEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHcccccccHHHHHHHHHHHHHccccccEEEEEEcccccEEEEccccccccEEEEccccccccccccccccHHHHHHccccccHHHHHHHHHHHHHccccccccHHHHcccccccccccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHEEccccEEEcccccccccccccccccccccccEEEEEcccccccEEEEEEccccccccEEEEccccccHHHHHHHccccccccccccEEEEEcccccccccccccccHHHHHHHcccccccEEccccccccHHHHHHHHHHccccccHHHHHHHHHHccc
cccccccccHHHHcccccEEEEEEccccccHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHHHHHHHHHcHcHEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHccccccEEEEEccccccEEEEEcccccccEEEEEcHHHEEcHHHHcccHHHHHHHccccccHHHHHHHHHHHHHHccccccHHHHHHccccccccEEccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHccccccccccEEEEEEHHHHHccccccEEEEEEEccccccEEEEEEEcccccccEEEEEcccccHHHHHHHccccccccccccEEEEEEEcccccHHHHHHHHHHHHccccccEEccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHcc
madveacssrdslengdgcslvlelteddplfhkkkkllndkgfgVKEQIHLqssmcpdsiSNSLETMLRIGRIIHVDEVELyfgefdtqmgfysprneLETLNSILARVNTLLSRQMHKKMNVWQGLQAAIILKIQEFGNQIKEVARIDknytcekeKCLVQwgesngvktkLEIAYVGGAGRGAVAMEDLRVGDIALEIPVSIILSKDLVHKSDMYNVLGKIEGMSSETMLLLWSMKekhncgskfknyfdslpkefhtglsfgVDAIMALEGTLLLEEIMQAKEHLRTQYDELFprlcndypdifppkfyTWEQFLWACELFYSNSMKIIFADGKLRTCLIPIagflnhslnphivhygrvdsatnslkfplsrpcnigeqcclsygnfstshlitfygfspqgdnrydvipididvgqadcfedcpmsnwtthmvrgtwlsknhnifnyglpspllDYLRRVRNPMQYEKTLVIFLSLLHM
madveacssrdslengdgCSLVLElteddplfhKKKKLLNDKGFGVKEQIHLQSSMCPDSISNSLETMLRIGRIIHVDEVELYFGEFDTQMGFYSPRNELETLNSILARVNTLLSRQMHKKMNVWQGLQAAIILKIQEFGNQIKEVARIDKNYTCEKEKClvqwgesngvktKLEIAYVGGAGRGAVAMEDLRVGDIALEIPVSiilskdlvhKSDMYNVLGKIEGMSSETMLLLWSMKEKHNCGSKFKNYFDSLPKEFHTGLSFGVDAIMALEGTLLLEEIMQAKEHLRTQYDELFPRLCNDYPDIFPPKFYTWEQFLWACELFYSNSMKIIFADGKLRTCLIPIAGFLNHSLNPHIVHYGRVDSATNSLKFPLSRPCNIGEQCCLSYGNFSTSHLITFYGFSPQGDNRYDVIPIDIDVGQADCFEDCPMSNWTTHMVRGTWLSKNHNIFNYGLPSPLLDYLRRVRNPMQYEKTLVIFLSLLHM
MADVEACSSRDSLENGDGCSLVLELTEDDPLFHKKKKLLNDKGFGVKEQIHLQSSMCPDSISNSLETMLRIGRIIHVDEVELYFGEFDTQMGFYSPRNELETLNSILARVNTLLSRQMHKKMNVWQGLQAAIILKIQEFGNQIKEVARIDKNYTCEKEKCLVQWGESNGVKTKLEIayvggagrgavaMEDLRVGDIALEIPVSIILSKDLVHKSDMYNVLGKIEGMSSETMLLLWSMKEKHNCGSKFKNYFDSLPKEFHTGLSFGVDAIMALEGTLLLEEIMQAKEHLRTQYDELFPRLCNDYPDIFPPKFYTWEQFLWACELFYSNSMKIIFADGKLRTCLIPIAGFLNHSLNPHIVHYGRVDSATNSLKFPLSRPCNIGEQCCLSYGNFSTSHLITFYGFSPQGDNRYDVIPIDIDVGQADCFEDCPMSNWTTHMVRGTWLSKNHNIFNYGLPSPLLDYLRRVRNPMQYEKTLVIFLSLLHM
******************CSLVLELTEDDPLFHKKKKLLNDKGFGVKEQIHLQSSMCPDSISNSLETMLRIGRIIHVDEVELYFGEFDTQMGFYSPRNELETLNSILARVNTLLSRQMHKKMNVWQGLQAAIILKIQEFGNQIKEVARIDKNYTCEKEKCLVQWGESNGVKTKLEIAYVGGAGRGAVAMEDLRVGDIALEIPVSIILSKDLVHKSDMYNVLGKIEGMSSETMLLLWSMKEKHNCGSKFKNYFDSLPKEFHTGLSFGVDAIMALEGTLLLEEIMQAKEHLRTQYDELFPRLCNDYPDIFPPKFYTWEQFLWACELFYSNSMKIIFADGKLRTCLIPIAGFLNHSLNPHIVHYGRVDSATNSLKFPLSRPCNIGEQCCLSYGNFSTSHLITFYGFSPQGDNRYDVIPIDIDVGQADCFEDCPMSNWTTHMVRGTWLSKNHNIFNYGLPSPLLDYLRRVRNPMQYEKTLVIFLSLL**
**************NGDGCSLVLELTEDDPLFHKKKKLLNDKGFGVKEQIHLQSSMCPDSISNSLETMLRIGRIIHVDEVELYFGEFDTQMGFYSPRNELETLNSILA******************GLQAA*****************************LVQWGESNGVKTKLEIAYVGGAGRGAVAMEDLRVGDIALEIPVSIILSKDLVHKSDMYNVLGKIEGMSSETMLLLWSMKEKHNCGSKFKNYFDSLPKEFHTGLSFGVDAIMALEGTLLLEEIMQAKEHLRTQYDELFPRLCNDYPDIFPPKFYTWEQFLWACELFYSNSMKIIFADGKLRTCLIPIAGFLNHSLNPHIVHYGRVDSATNSLKFPLSRPCNIGEQCCLSYGNFSTSHLITFYGFSPQGDNRYDVIPIDIDVGQADCFEDCPMSNWTTHMVRGTWLSKNHNIFNYGLPSPLLDYLRRVRNPMQYEKTLVIFLSLLHM
***************GDGCSLVLELTEDDPLFHKKKKLLNDKGFGVKEQIHLQSSMCPDSISNSLETMLRIGRIIHVDEVELYFGEFDTQMGFYSPRNELETLNSILARVNTLLSRQMHKKMNVWQGLQAAIILKIQEFGNQIKEVARIDKNYTCEKEKCLVQWGESNGVKTKLEIAYVGGAGRGAVAMEDLRVGDIALEIPVSIILSKDLVHKSDMYNVLGKIEGMSSETMLLLWSMKEKHNCGSKFKNYFDSLPKEFHTGLSFGVDAIMALEGTLLLEEIMQAKEHLRTQYDELFPRLCNDYPDIFPPKFYTWEQFLWACELFYSNSMKIIFADGKLRTCLIPIAGFLNHSLNPHIVHYGRVDSATNSLKFPLSRPCNIGEQCCLSYGNFSTSHLITFYGFSPQGDNRYDVIPIDIDVGQADCFEDCPMSNWTTHMVRGTWLSKNHNIFNYGLPSPLLDYLRRVRNPMQYEKTLVIFLSLLHM
**************NGDGCSLVLELTEDDPLFHKKKKLLNDKGFGVKEQIHLQSSMCPDSISNSLETMLRIGRIIHVDEVELYFGEFDTQMGFYSPRNELETLNSILARVNTLLSRQMHKKMNVWQGLQAAIILKIQEFGNQIKEVA******TCEKEKCLVQWGESNGVKTKLEIAYVGGAGRGAVAMEDLRVGDIALEIPVSIILSKDLVHKSDMYNVLGKIEGMSSETMLLLWSMKEKHNCGSKFKNYFDSLPKEFHTGLSFGVDAIMALEGTLLLEEIMQAKEHLRTQYDELFPRLCNDYPDIFPPKFYTWEQFLWACELFYSNSMKIIFADGKLRTCLIPIAGFLNHSLNPHIVHYGRVDSATNSLKFPLSRPCNIGEQCCLSYGNFSTSHLITFYGFSPQGDNRYDVIPIDIDVGQADCFEDCPMSNWTTHMVRGTWLSKNHNIFNYGLPSPLLDYLRRVRNPMQYEKTLVIFLSLLHM
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MADVEACSSRDSLENGDGCSLVLELTEDDPLFHKKKKLLNDKGFGVKEQIHLQSSMCPDSISNSLETMLRIGRIIHVDEVELYFGEFDTQMGFYSPRNELETLNSILARVNTLLSRQMHKKMNVWQGLQAAIILKIQEFGNQIKEVARIDKNYTCEKEKCLVQWGESNGVKTKLEIAYVGGAGRGAVAMEDLRVGDIALEIPVSIILSKDLVHKSDMYNVLGKIEGMSSETMLLLWSMKEKHNCGSKFKNYFDSLPKEFHTGLSFGVDAIMALEGTLLLEEIMQAKEHLRTQYDELFPRLCNDYPDIFPPKFYTWEQFLWACELFYSNSMKIIFADGKLRTCLIPIAGFLNHSLNPHIVHYGRVDSATNSLKFPLSRPCNIGEQCCLSYGNFSTSHLITFYGFSPQGDNRYDVIPIDIDVGQADCFEDCPMSNWTTHMVRGTWLSKNHNIFNYGLPSPLLDYLRRVRNPMQYEKTLVIFLSLLHM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query485 2.2.26 [Sep-21-2011]
Q43088 489 Ribulose-1,5 bisphosphate N/A no 0.591 0.586 0.267 3e-15
Q5ZK17447 N-lysine methyltransferas yes no 0.521 0.565 0.249 3e-12
Q9XI84 482 [Fructose-bisphosphate al no no 0.523 0.526 0.250 7e-12
P94026 491 Ribulose-1,5 bisphosphate N/A no 0.519 0.513 0.255 8e-12
B2KI88 594 Histone-lysine N-methyltr N/A no 0.531 0.434 0.227 4e-10
P58467439 SET domain-containing pro yes no 0.494 0.546 0.257 4e-10
Q5ZML9 593 Histone-lysine N-methyltr no no 0.531 0.435 0.231 5e-10
C1FXW2 589 Histone-lysine N-methyltr N/A no 0.531 0.438 0.235 1e-09
E2RBS6 588 Histone-lysine N-methyltr yes no 0.531 0.438 0.227 2e-09
A9X1D0 595 Histone-lysine N-methyltr N/A no 0.531 0.433 0.227 2e-09
>sp|Q43088|RBCMT_PEA Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic OS=Pisum sativum GN=RBCMT PE=1 SV=1 Back     alignment and function desciption
 Score = 84.0 bits (206), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 152/321 (47%), Gaps = 34/321 (10%)

Query: 163 QWGESNGV---KTKLEIAYVGGAGRGAVAMEDLRVGDIALEIPVSIILSKDLVHKSDMYN 219
           +W +  GV   KT ++ A V   G G VA++D+   D+ L++P  + ++ D V  S++  
Sbjct: 59  KWLQEEGVITAKTPVK-ASVVTEGLGLVALKDISRNDVILQVPKRLWINPDAVAASEIGR 117

Query: 220 VLGKIEGMSSETMLLLWSMKEKHNCGSKFKNYFDSLPKEFHTGLSFGVDAIMALEGTLLL 279
           V  +++   S   ++L+ ++E+    S +K+YF  LP+E  + + +  + +  L+G+ LL
Sbjct: 118 VCSELKPWLS---VILFLIRERSREDSVWKHYFGILPQETDSTIYWSEEELQELQGSQLL 174

Query: 280 EEIMQAKEHLRTQYDELFPRLCNDYPDIFPPKFYTWEQFLWACELFYSNSMKIIFADGKL 339
           +  +  KE+++ +  +L   +      +FP    T + F WA  +  S +        +L
Sbjct: 175 KTTVSVKEYVKNECLKLEQEIILPNKRLFPDPV-TLDDFFWAFGILRSRAF------SRL 227

Query: 340 RT---CLIPIAGFLNHSLNPHIV-HYGRVDSATN--------SLKFPLSRPCNIGEQCCL 387
           R     ++P+A  +NHS       H   V  A          SLK PLS     GEQ  +
Sbjct: 228 RNENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLS--VKAGEQVYI 285

Query: 388 SYG-NFSTSHLITFYGFSPQGDNRYDVIPIDIDVGQADCFEDCPMSNWTTHMVRGTWLSK 446
            Y  N S + L   YGF    +NR+    + +++ ++D F D  +    ++   G   + 
Sbjct: 286 QYDLNKSNAELALDYGFIEPNENRH-AYTLTLEISESDPFFDDKLDVAESN---GFAQTA 341

Query: 447 NHNIF-NYGLPSPLLDYLRRV 466
             +IF N  LP  LL YLR V
Sbjct: 342 YFDIFYNRTLPPGLLPYLRLV 362
Methylates 'Lys-14' of the large subunit of RuBisCO.
Pisum sativum (taxid: 3888)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 2EC: 7
>sp|Q5ZK17|SETD6_CHICK N-lysine methyltransferase SETD6 OS=Gallus gallus GN=SETD6 PE=2 SV=2 Back     alignment and function description
>sp|Q9XI84|RBCMT_ARATH [Fructose-bisphosphate aldolase]-lysine N-methyltransferase, chloroplastic OS=Arabidopsis thaliana GN=LSMT-L PE=1 SV=1 Back     alignment and function description
>sp|P94026|RBCMT_TOBAC Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic OS=Nicotiana tabacum GN=RBCMT PE=2 SV=1 Back     alignment and function description
>sp|B2KI88|SETD3_RHIFE Histone-lysine N-methyltransferase setd3 OS=Rhinolophus ferrumequinum GN=SETD3 PE=3 SV=1 Back     alignment and function description
>sp|P58467|SETD4_MOUSE SET domain-containing protein 4 OS=Mus musculus GN=Setd4 PE=2 SV=1 Back     alignment and function description
>sp|Q5ZML9|SETD3_CHICK Histone-lysine N-methyltransferase setd3 OS=Gallus gallus GN=SETD3 PE=2 SV=1 Back     alignment and function description
>sp|C1FXW2|SETD3_DASNO Histone-lysine N-methyltransferase setd3 OS=Dasypus novemcinctus GN=SETD3 PE=3 SV=1 Back     alignment and function description
>sp|E2RBS6|SETD3_CANFA Histone-lysine N-methyltransferase setd3 OS=Canis familiaris GN=SETD3 PE=3 SV=1 Back     alignment and function description
>sp|A9X1D0|SETD3_PAPAN Histone-lysine N-methyltransferase setd3 OS=Papio anubis GN=SETD3 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query485
255581713558 [ribulose-bisphosphate carboxylase]-lysi 0.983 0.854 0.680 0.0
224125978513 predicted protein [Populus trichocarpa] 0.898 0.849 0.696 0.0
356564844549 PREDICTED: uncharacterized protein LOC10 0.958 0.846 0.644 0.0
225446052566 PREDICTED: uncharacterized protein LOC10 0.956 0.819 0.628 1e-171
297735395583 unnamed protein product [Vitis vinifera] 0.956 0.795 0.628 1e-171
449506720559 PREDICTED: uncharacterized LOC101212907 0.960 0.833 0.590 1e-156
449466129559 PREDICTED: uncharacterized protein LOC10 0.960 0.833 0.590 1e-155
28393324543 unknown protein [Arabidopsis thaliana] 0.936 0.836 0.580 1e-152
79557522543 SET domain-containing protein [Arabidops 0.936 0.836 0.580 1e-152
334184301536 SET domain-containing protein [Arabidops 0.917 0.830 0.590 1e-151
>gi|255581713|ref|XP_002531659.1| [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase, putative [Ricinus communis] gi|223528717|gb|EEF30729.1| [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/479 (68%), Positives = 388/479 (81%), Gaps = 2/479 (0%)

Query: 1   MADVEACSSRDSLENGDGCSLVLELTEDDPLFHKKKKLLNDKGFGVKEQIHLQSSMCPDS 60
           M D +  SS   +   D   +VLEL EDDP F KKKKLL DKGF +KEQI LQSS   DS
Sbjct: 1   MEDPKHFSSNKIIVKDDTFIIVLELPEDDPFFDKKKKLLCDKGFDIKEQIQLQSSFSLDS 60

Query: 61  ISNSLETMLRIGRIIHVDEVELYFGEFD--TQMGFYSPRNELETLNSILARVNTLLSRQM 118
           ++ +L  +L I RIIH+DEVELYFGE D  + + + S RNE+E LNSI A ++ +LS + 
Sbjct: 61  VATTLRKILHIARIIHLDEVELYFGENDECSSVEYCSLRNEVEALNSIAALLDGMLSSKT 120

Query: 119 HKKMNVWQGLQAAIILKIQEFGNQIKEVARIDKNYTCEKEKCLVQWGESNGVKTKLEIAY 178
           H++MNV Q L+ A++ +I+      +   RIDK+Y+C+KEK + +WG+ NGV ++LEI Y
Sbjct: 121 HREMNVLQTLRDAVVDRIENSMEDNRVETRIDKSYSCDKEKSIAEWGQRNGVHSRLEIVY 180

Query: 179 VGGAGRGAVAMEDLRVGDIALEIPVSIILSKDLVHKSDMYNVLGKIEGMSSETMLLLWSM 238
           V GAGRGA+A EDL+VGDIALEIPVSII+S++LV  SDMY++L KI+G+SSETMLLLWSM
Sbjct: 181 VEGAGRGAIATEDLKVGDIALEIPVSIIISEELVRHSDMYHILEKIDGISSETMLLLWSM 240

Query: 239 KEKHNCGSKFKNYFDSLPKEFHTGLSFGVDAIMALEGTLLLEEIMQAKEHLRTQYDELFP 298
           KE+HNC SK K YFD+LPKEF+TGLSFGVDAIMA +GTLL +EIMQAKEHLR QYDEL P
Sbjct: 241 KERHNCNSKSKIYFDTLPKEFNTGLSFGVDAIMASDGTLLFDEIMQAKEHLRVQYDELVP 300

Query: 299 RLCNDYPDIFPPKFYTWEQFLWACELFYSNSMKIIFADGKLRTCLIPIAGFLNHSLNPHI 358
            LCN+YPD+FPP+ YTWEQFLWACEL+YSNSMKI F DGKLRTCLIPIAGFLNHSL+PHI
Sbjct: 301 ALCNNYPDVFPPELYTWEQFLWACELWYSNSMKIKFLDGKLRTCLIPIAGFLNHSLHPHI 360

Query: 359 VHYGRVDSATNSLKFPLSRPCNIGEQCCLSYGNFSTSHLITFYGFSPQGDNRYDVIPIDI 418
           +HYG+VDS TN+LKFPLSRPC +GEQCCLSYGNFS +HLITFYGF PQGDNRYD+IP+DI
Sbjct: 361 IHYGKVDSITNTLKFPLSRPCRVGEQCCLSYGNFSGAHLITFYGFLPQGDNRYDIIPLDI 420

Query: 419 DVGQADCFEDCPMSNWTTHMVRGTWLSKNHNIFNYGLPSPLLDYLRRVRNPMQYEKTLV 477
           D G+AD  EDCPMS+W THMVRGTWLSKNHNIF YGLP PLLD  RR R PM Y KT+ 
Sbjct: 421 DAGEADSTEDCPMSSWATHMVRGTWLSKNHNIFCYGLPCPLLDLFRRARVPMPYTKTIT 479

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class: N/A

Phylum: Streptophyta

Superkingdom:

>gi|224125978|ref|XP_002329631.1| predicted protein [Populus trichocarpa] gi|222870512|gb|EEF07643.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356564844|ref|XP_003550657.1| PREDICTED: uncharacterized protein LOC100778605 [Glycine max] Back     alignment and taxonomy information
>gi|225446052|ref|XP_002268920.1| PREDICTED: uncharacterized protein LOC100256524 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297735395|emb|CBI17835.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449506720|ref|XP_004162829.1| PREDICTED: uncharacterized LOC101212907 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449466129|ref|XP_004150779.1| PREDICTED: uncharacterized protein LOC101212907 [Cucumis sativus] Back     alignment and taxonomy information
>gi|28393324|gb|AAO42088.1| unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|79557522|ref|NP_179475.3| SET domain-containing protein [Arabidopsis thaliana] gi|56381987|gb|AAV85712.1| At2g18850 [Arabidopsis thaliana] gi|330251719|gb|AEC06813.1| SET domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|334184301|ref|NP_001189551.1| SET domain-containing protein [Arabidopsis thaliana] gi|330251720|gb|AEC06814.1| SET domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query485
TAIR|locus:2044465543 AT2G18850 "AT2G18850" [Arabido 0.936 0.836 0.565 1.9e-138
TAIR|locus:2077342 504 AT3G07670 [Arabidopsis thalian 0.680 0.654 0.245 7.6e-18
DICTYBASE|DDB_G0269768 567 cnrI "putative cell number reg 0.742 0.634 0.224 1.4e-11
TAIR|locus:2014764 482 LSMT-L "lysine methyltransfera 0.544 0.547 0.242 3.6e-10
UNIPROTKB|B2KI88 594 SETD3 "Histone-lysine N-methyl 0.531 0.434 0.216 6.8e-10
UNIPROTKB|Q5ZML9 593 SETD3 "Histone-lysine N-methyl 0.531 0.435 0.216 1.1e-09
UNIPROTKB|Q5ZK17447 SETD6 "N-lysine methyltransfer 0.519 0.563 0.231 1.9e-09
UNIPROTKB|E2RBS6 588 SETD3 "Histone-lysine N-methyl 0.531 0.438 0.216 2.4e-09
UNIPROTKB|C1FXW2 589 SETD3 "Histone-lysine N-methyl 0.531 0.438 0.224 2.4e-09
UNIPROTKB|F6R2J7 594 SETD3 "Uncharacterized protein 0.531 0.434 0.216 5.2e-09
TAIR|locus:2044465 AT2G18850 "AT2G18850" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1355 (482.0 bits), Expect = 1.9e-138, P = 1.9e-138
 Identities = 262/463 (56%), Positives = 341/463 (73%)

Query:    14 ENGDGCSLVLELTEDDPLFHKKKKLLNDKGFGVKEQIHLQSSMCPDSISNSLETMLRIGR 73
             E GD C   +EL +DDP +H KKK L+ KG  VKE ++L  S+    ++ +LE +L  GR
Sbjct:    10 ETGDLC---VELPKDDPFYHHKKKFLSCKGLCVKETLNLSGSLSQQLLNAALEKLLHFGR 66

Query:    74 IIHVDEVELYFGEFD-TQMGFYSPRNELETLNSILARVNTLLSRQMHKKMNVWQGLQAAI 132
             I+++D+VE+YFGE   T  G YS RNE+  L+ IL+ +   +S +M  +++ ++ L+AA+
Sbjct:    67 IVNLDKVEVYFGEDACTPAGIYSVRNEISALSWILSLIP--VSCKMQTQVDTFEALRAAL 124

Query:   133 ILKIQEFGNQIKEVARIDKNYTCEKEKCLVQWGESNGVKTKLEIXXXXXXXXXXXXMEDL 192
               +I E     KE AR+  +Y CEKE  LV+WG+ NGVKTKL+I             EDL
Sbjct:   125 KGRINEVVGAEKEKARVVDSYRCEKESKLVEWGQDNGVKTKLQIAQIDGYGRGAIASEDL 184

Query:   193 RVGDIALEIPVSIILSKDLVHKSDMYNVLGKIEGMSSETMLLLWSMKEKHNCGSKFKNYF 252
             + GD+ALEIPVS I+S++ V+ SDMY +L   +G++SETMLLLW+M+EKHN  SKFK YF
Sbjct:   185 KFGDVALEIPVSSIISEEYVYNSDMYPILETFDGITSETMLLLWTMREKHNLDSKFKPYF 244

Query:   253 DSLPKEFHTGLSFGVDAIMALEGTLLLEEIMQAKEHLRTQYDELFPRLCNDYPDIFPPKF 312
             DSL + F TGLSFGVDAIM L+GTLLL+EIMQAKE LR +YDEL P L N + ++FPP+ 
Sbjct:   245 DSLQENFCTGLSFGVDAIMELDGTLLLDEIMQAKELLRERYDELIPLLSN-HREVFPPEL 303

Query:   313 YTWEQFLWACELFYSNSMKIIFADGKLRTCLIPIAGFLNHSLNPHIVHYGRVDSATNSLK 372
             YTWE +LWACEL+YSNSM+I F DGKL+TCLIP+AGFLNHS+ PHIV YG+VD  T+SLK
Sbjct:   304 YTWEHYLWACELYYSNSMQIKFPDGKLKTCLIPVAGFLNHSIYPHIVKYGKVDIETSSLK 363

Query:   373 FPLSRPCNIGEQCCLSYGNFSTSHLITFYGFSPQGDNRYDVIPIDIDVGQADCFEDCPMS 432
             FP+SRPCN GEQC LSYGN+S+SHL+TFYGF P+GDN YDVIP+D DV   +  E     
Sbjct:   364 FPVSRPCNKGEQCFLSYGNYSSSHLLTFYGFLPKGDNPYDVIPLDFDVIDDEDIET--EF 421

Query:   433 NWTTHMVRGTWLSKNHNIFNYGLPSPLLDYLRRVRNPMQYEKT 475
             +WTTHM+RGTWLS NHNIF+YGLP+PLL+YLR+    + + +T
Sbjct:   422 SWTTHMLRGTWLSSNHNIFHYGLPTPLLNYLRKAHGLVHHSET 464
GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0009507 "chloroplast" evidence=ISM
TAIR|locus:2077342 AT3G07670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0269768 cnrI "putative cell number regulator" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TAIR|locus:2014764 LSMT-L "lysine methyltransferase (LSMT)-like" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|B2KI88 SETD3 "Histone-lysine N-methyltransferase setd3" [Rhinolophus ferrumequinum (taxid:59479)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZML9 SETD3 "Histone-lysine N-methyltransferase setd3" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZK17 SETD6 "N-lysine methyltransferase SETD6" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2RBS6 SETD3 "Histone-lysine N-methyltransferase setd3" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|C1FXW2 SETD3 "Histone-lysine N-methyltransferase setd3" [Dasypus novemcinctus (taxid:9361)] Back     alignment and assigned GO terms
UNIPROTKB|F6R2J7 SETD3 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.01210008
hypothetical protein (513 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 485
KOG1338 466 consensus Uncharacterized conserved protein [Funct 99.97
KOG1337 472 consensus N-methyltransferase [General function pr 99.96
PF00856162 SET: SET domain; InterPro: IPR001214 The SET domai 99.7
smart00317116 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) 98.83
PF09273128 Rubis-subs-bind: Rubisco LSMT substrate-binding; I 97.85
KOG2589 453 consensus Histone tail methylase [Chromatin struct 94.09
KOG4442 729 consensus Clathrin coat binding protein/Huntingtin 93.58
KOG1085392 consensus Predicted methyltransferase (contains a 92.8
KOG1079739 consensus Transcriptional repressor EZH1 [Transcri 90.48
KOG10801005 consensus Histone H3 (Lys4) methyltransferase comp 86.85
PF09273128 Rubis-subs-bind: Rubisco LSMT substrate-binding; I 84.46
>KOG1338 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information 
Probab=99.97  E-value=1.6e-30  Score=261.01  Aligned_cols=245  Identities=22%  Similarity=0.296  Sum_probs=201.0

Q ss_pred             ChhhHHHHHHHHHHCC-Cee--eEEEEEeC----CCceEEEEccCCCCCCEEEEeccccccCcccccC-CchHHHhhc-c
Q 011459          154 TCEKEKCLVQWGESNG-VKT--KLEIAYVG----GAGRGAVAMEDLRVGDIALEIPVSIILSKDLVHK-SDMYNVLGK-I  224 (485)
Q Consensus       154 ~~~~~~~f~~Wl~~~G-~~~--~v~i~~~~----~~GrGLvAt~dI~~Ge~ll~IP~~l~it~~~a~~-s~l~~~l~~-~  224 (485)
                      ..+....|+.|++..+ ..+  ++.+.+.+    ..|+|++|+++|++|+.++.+|+++++++.+..- .++.....- +
T Consensus         5 ~~d~~~~fl~w~k~t~eletSpKi~~ndl~~v~~~~G~g~vAtesIkkgE~Lf~~prdsvLsvtts~li~~lps~~rv~L   84 (466)
T KOG1338|consen    5 VSDLAKRFLLWGKLTLELETSPKIDNNDLPWVERIAGAGIVATESIKKGESLFAYPRDSVLSVTTSALITPLPSDIRVLL   84 (466)
T ss_pred             cccHHHHHHHHHHHhhheeecccccccccchhhhhcccceeeehhhcCCceEEEecCccEEeeehHHhcccchHHHHHHh
Confidence            4456789999999988 555  45555433    2599999999999999999999999999876321 122211111 2


Q ss_pred             cCCChHHHHHHHHHHhhc-cCCCCchhHHhhcCC--CccCcccccHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHhhh
Q 011459          225 EGMSSETMLLLWSMKEKH-NCGSKFKNYFDSLPK--EFHTGLSFGVDAIMALEGTLLLEEIMQAKEHLRTQYDELFPRLC  301 (485)
Q Consensus       225 ~~ls~~~~LaL~Ll~Er~-g~~S~W~pYl~~LP~--~~~tpl~ws~eel~~L~gT~l~~~~~~~~~~i~~~y~~l~~~L~  301 (485)
                      .+.+.|.+|++.|++|.. +.+|+|+||++.+|+  ..++|+||+++|++.|..+.++++..+.+..+++.|.....++.
T Consensus        85 ne~gsw~~Lllvll~E~~~pq~SrWrPYfs~wp~p~rm~spifWdEnEl~~Ll~stvlee~~Kd~aeI~~~~i~~i~pf~  164 (466)
T KOG1338|consen   85 NEVGSWGMLLLVLLREKKMPQKSRWRPYFSRWPQPARMHSPIFWDENELSMLLCSTVLEETVKDKAEIEKDFIFVIQPFK  164 (466)
T ss_pred             hcCCcHHHHHHHHHHHhhcccccccccHHHhCCChhhcCCCccCCchHHHHHhhcccchhhHhHHHHHHHHHHHHHHHHH
Confidence            567889999999999985 455999999999998  68899999999999887777777788899999999999999999


Q ss_pred             ccCCCCCCCCCCCHhhHHHHHHHhhcceeeeeecC-----------CCcceeccccccccCCCCC-CCceeeeeeecCCC
Q 011459          302 NDYPDIFPPKFYTWEQFLWACELFYSNSMKIIFAD-----------GKLRTCLIPIAGFLNHSLN-PHIVHYGRVDSATN  369 (485)
Q Consensus       302 ~~~p~~f~~~~~t~e~f~WA~siV~SRaf~~~~~d-----------G~~~~~LvP~~Dm~NH~~~-~~~~~~~~~d~~~~  369 (485)
                      +.+|..|..  +++|+|+++++++.+.+|.++..+           .....+|+|.+||+||+.. .++    ....+++
T Consensus       165 ~~~p~vfs~--~slEdF~y~~Al~laysfdve~~~s~~~~eee~e~e~ngk~m~p~ad~lNhd~~k~na----nl~y~~N  238 (466)
T KOG1338|consen  165 QHCPIVFSR--PSLEDFMYAYALGLAYSFDVEFLLSLDNLEEESEIECNGKLMTPIADFLNHDGLKANA----NLRYEDN  238 (466)
T ss_pred             HhCcchhcc--cCHHHHHHHHHHHHHHheeeehhcchhhhhhhhccccCcccccchhhhhccchhhccc----ceeccCc
Confidence            999999854  899999999999999999998652           1246899999999999976 332    1234689


Q ss_pred             eEEEEeccccCCCCeeEeccCCCChHHHHHhcCccCC
Q 011459          370 SLKFPLSRPCNIGEQCCLSYGNFSTSHLITFYGFSPQ  406 (485)
Q Consensus       370 ~l~l~a~r~i~~GeEVfisYG~~sN~eLLl~YGFv~~  406 (485)
                      |+.|+|.|+|.+|+||+++||-++|.  |++||.+.-
T Consensus       239 cL~mva~r~iekgdev~n~dg~~p~~--l~~l~ka~c  273 (466)
T KOG1338|consen  239 CLEMVADRNIEKGDEVDNSDGLKPMG--LLKLTKALC  273 (466)
T ss_pred             ceeeeecCCCCCccccccccccCcch--hhhhhhhcc
Confidence            99999999999999999999999998  788887766

>KOG1337 consensus N-methyltransferase [General function prediction only] Back     alignment and domain information
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco Back     alignment and domain information
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain Back     alignment and domain information
>PF09273 Rubis-subs-bind: Rubisco LSMT substrate-binding; InterPro: IPR015353 This domain adopts a multihelical structure, with an irregular array of long and short alpha-helices Back     alignment and domain information
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only] Back     alignment and domain information
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription] Back     alignment and domain information
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>PF09273 Rubis-subs-bind: Rubisco LSMT substrate-binding; InterPro: IPR015353 This domain adopts a multihelical structure, with an irregular array of long and short alpha-helices Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query485
1mlv_A 444 Structure And Catalytic Mechanism Of A Set Domain P 6e-14
2h21_A 440 Structure Of Rubisco Lsmt Bound To Adomet Length = 6e-14
3smt_A497 Crystal Structure Of Human Set Domain-Containing Pr 3e-07
3qxy_A449 Human Setd6 In Complex With Rela Lys310 Length = 44 5e-05
>pdb|1MLV|A Chain A, Structure And Catalytic Mechanism Of A Set Domain Protein Methyltransferase Length = 444 Back     alignment and structure 
Iteration: 1

 Score = 75.5 bits (184), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 137/292 (46%), Gaps = 30/292 (10%)
Query: 189 MEDLRVGDIALEIPVSIILSKDLVHKSDMYNVLGKIEGMSSETMLLLWSMKEKHNCGSKF 248
           ++D+   D+ L++P  + ++ D V  S++  V  +++   S   ++L+ ++E+    S +
Sbjct: 43  LKDISRNDVILQVPKRLWINPDAVAASEIGRVCSELKPWLS---VILFLIRERSREDSVW 99
Query: 249 KNYFDSLPKEFHTGLSFGVDAIMALEGTLLLEEIMQAKEHLRTQYDELFPRLCNDYPDIF 308
           K+YF  LP+E  + + +  + +  L+G+ LL+  +  KE+++ +  +L   +      +F
Sbjct: 100 KHYFGILPQETDSTIYWSEEELQELQGSQLLKTTVSVKEYVKNECLKLEQEIILPNKRLF 159
Query: 309 PPKFYTWEQFLWACELFYSNSMKIIFADGKLRT---CLIPIAGFLNHSLNPHIV-HYGRV 364
           P    T + F WA  +  S +        +LR     ++P+A  +NHS       H   V
Sbjct: 160 PDPV-TLDDFFWAFGILRSRAF------SRLRNENLVVVPMADLINHSAGVTTEDHAYEV 212
Query: 365 DSATN--------SLKFPLSRPCNIGEQCCLSYG-NFSTSHLITFYGFSPQGDNRYDVIP 415
             A          SLK PLS     GEQ  + Y  N S + L   YGF    +NR+    
Sbjct: 213 KGAAGLFSWDYLFSLKSPLS--VKAGEQVYIQYDLNKSNAELALDYGFIEPNENRH-AYT 269
Query: 416 IDIDVGQADCFEDCPMSNWTTHMVRGTWLSKNHNIF-NYGLPSPLLDYLRRV 466
           + +++ ++D F D  +    ++   G   +   +IF N  LP  LL YLR V
Sbjct: 270 LTLEISESDPFFDDKLDVAESN---GFAQTAYFDIFYNRTLPPGLLPYLRLV 318
>pdb|2H21|A Chain A, Structure Of Rubisco Lsmt Bound To Adomet Length = 440 Back     alignment and structure
>pdb|3SMT|A Chain A, Crystal Structure Of Human Set Domain-Containing Protein3 Length = 497 Back     alignment and structure
>pdb|3QXY|A Chain A, Human Setd6 In Complex With Rela Lys310 Length = 449 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query485
3smt_A497 Histone-lysine N-methyltransferase SETD3; histone 6e-57
3qxy_A449 N-lysine methyltransferase SETD6; epigenetics, pro 7e-52
2h21_A 440 Ribulose-1,5 bisphosphate carboxylase/oxygenase; S 1e-50
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
3n71_A 490 Histone lysine methyltransferase SMYD1; heart deve 6e-07
3qwp_A429 SET and MYND domain-containing protein 3; SMYD3,SE 7e-07
3qww_A433 SET and MYND domain-containing protein 2; methyltr 7e-05
>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens} Length = 497 Back     alignment and structure
 Score =  195 bits (497), Expect = 6e-57
 Identities = 65/382 (17%), Positives = 142/382 (37%), Gaps = 13/382 (3%)

Query: 89  TQMGFYSPRNELETLNSILARVNTLLSRQMHKKMNVWQGLQAAIILKIQEFGNQIKEVAR 148
           +  G  +  +  E LN     +    S          + +Q   ++  ++   + K ++ 
Sbjct: 11  SGTGATATVSPKEILNLTSELLQKCSSPAPGPGKEWEEYVQIRTLV--EKIRKKQKGLSV 68

Query: 149 IDKNYTCEKEKCLVQWGESNGVKT-KLEIAYVGGAGRGAVAMEDLRVGDIALEIPVSIIL 207
                  +    L++W   NG      E+      G G  A  D++  ++ L +P  +++
Sbjct: 69  TFDGKREDYFPDLMKWASENGASVEGFEMVNFKEEGFGLRATRDIKAEELFLWVPRKLLM 128

Query: 208 SKDLVHKSDMYNVLGKIEGMSS--ETMLLLWSMKEKHNCGSKFKNYFDSLPKEFHTGLSF 265
           + +    S +  +  +   + +     L    + E+ +  S ++ Y  +LP E+ T L F
Sbjct: 129 TVESAKNSVLGPLYSQDRILQAMGNIALAFHLLCERASPNSFWQPYIQTLPSEYDTPLYF 188

Query: 266 GVDAIMALEGTLLLEEIMQAKEHLRTQYDELFPRL--CNDYPDIFPPKFYTWEQFLWACE 323
             D +  L+ T  + ++    ++   QY   +  +        +     +T+E + WA  
Sbjct: 189 EEDEVRYLQSTQAIHDVFSQYKNTARQYAYFYKVIQTHPHANKLPLKDSFTYEDYRWAVS 248

Query: 324 LFYSNSMKIIFADG-KLRTCLIPIAGFLNHSLNPHIVHYGRVDSATNSLKFPLSRPCNIG 382
              +   +I   DG ++   LIP+    NH+       Y   D   +  +    +    G
Sbjct: 249 SVMTRQNQIPTEDGSRVTLALIPLWDMCNHTNGLITTGYNLED---DRCECVALQDFRAG 305

Query: 383 EQCCLSYGNFSTSHLITFYGFSPQGDNRYDVIPIDIDVGQADCFEDCPMSNWTTHMVRGT 442
           EQ  + YG  S +  +   GF    +N +D + I + V ++D              +  +
Sbjct: 306 EQIYIFYGTRSNAEFVIHSGFFFD-NNSHDRVKIKLGVSKSDRLYAMKAEVLARAGIPTS 364

Query: 443 WLSKNHNIFNYGLPSPLLDYLR 464
            +    +     + + LL +LR
Sbjct: 365 SVF-ALHFTEPPISAQLLAFLR 385
>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A* Length = 449 Back     alignment and structure
>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A* Length = 440 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490 Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429 Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query485
3smt_A497 Histone-lysine N-methyltransferase SETD3; histone 100.0
2h21_A 440 Ribulose-1,5 bisphosphate carboxylase/oxygenase; S 100.0
3qxy_A449 N-lysine methyltransferase SETD6; epigenetics, pro 100.0
3n71_A 490 Histone lysine methyltransferase SMYD1; heart deve 99.45
3qww_A433 SET and MYND domain-containing protein 2; methyltr 99.44
3qwp_A429 SET and MYND domain-containing protein 3; SMYD3,SE 99.36
1n3j_A119 A612L, histone H3 lysine methyltransferase; beta b 98.65
3f9x_A166 Histone-lysine N-methyltransferase SETD8; methyltr 98.42
3ooi_A232 Histone-lysine N-methyltransferase, H3 lysine-36 l 97.97
3rq4_A247 Histone-lysine N-methyltransferase SUV420H2; suppr 97.09
3ope_A222 Probable histone-lysine N-methyltransferase ASH1L; 96.92
2w5y_A192 Histone-lysine N-methyltransferase HRX; transcript 96.82
3s8p_A273 Histone-lysine N-methyltransferase SUV420H1; SET d 96.75
2f69_A261 Histone-lysine N-methyltransferase, H3 lysine-4 sp 96.67
3h6l_A278 Histone-lysine N-methyltransferase SETD2; SET doma 96.65
3hna_A287 Histone-lysine N-methyltransferase, H3 lysine-9 sp 96.46
1h3i_A293 Histone H3 lysine 4 specific methyltransferase; 2. 96.42
2qpw_A149 PR domain zinc finger protein 2; methyltransferase 96.2
3smt_A497 Histone-lysine N-methyltransferase SETD3; histone 96.14
3bo5_A290 Histone-lysine N-methyltransferase setmar; SET dom 96.09
2r3a_A300 Histone-lysine N-methyltransferase SUV39H2; histon 96.0
1mvh_A299 Cryptic LOCI regulator 4; lysine methyltransferase 95.87
1ml9_A302 Histone H3 methyltransferase DIM-5; adoMet-depende 95.69
2h21_A440 Ribulose-1,5 bisphosphate carboxylase/oxygenase; S 94.74
3db5_A151 PR domain zinc finger protein 4; methyltransferase 91.08
3ep0_A170 PR domain zinc finger protein 12; PR domain-contai 90.36
3h6l_A278 Histone-lysine N-methyltransferase SETD2; SET doma 89.04
3hna_A287 Histone-lysine N-methyltransferase, H3 lysine-9 sp 88.87
3bo5_A290 Histone-lysine N-methyltransferase setmar; SET dom 87.59
3dal_A196 PR domain zinc finger protein 1; methyltransferase 86.77
2w5y_A192 Histone-lysine N-methyltransferase HRX; transcript 86.71
1mvh_A299 Cryptic LOCI regulator 4; lysine methyltransferase 85.92
1ml9_A302 Histone H3 methyltransferase DIM-5; adoMet-depende 84.81
3ope_A222 Probable histone-lysine N-methyltransferase ASH1L; 83.78
3ihx_A152 PR domain zinc finger protein 10; PRDM10, methyltr 80.95
>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=2.8e-56  Score=477.90  Aligned_cols=333  Identities=19%  Similarity=0.282  Sum_probs=269.0

Q ss_pred             HHHHhhhhcccccchhhccccCChhhHHHHHHHHHHCCCee-eEEEEEeCCCceEEEEccCCCCCCEEEEeccccccCcc
Q 011459          132 IILKIQEFGNQIKEVARIDKNYTCEKEKCLVQWGESNGVKT-KLEIAYVGGAGRGAVAMEDLRVGDIALEIPVSIILSKD  210 (485)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~Wl~~~G~~~-~v~i~~~~~~GrGLvAt~dI~~Ge~ll~IP~~l~it~~  210 (485)
                      ++.++++......   ...+....+.+.+|++|+++||+.+ +|+|+.+++.|||++|+++|++|++|++||.+++||.+
T Consensus        55 ~~~~~~~~~~~~~---~~~~~~r~~~~~~ll~W~~~~G~~~~~v~i~~~~~~GrGl~A~~dI~~ge~ll~IP~~lllt~~  131 (497)
T 3smt_A           55 LVEKIRKKQKGLS---VTFDGKREDYFPDLMKWASENGASVEGFEMVNFKEEGFGLRATRDIKAEELFLWVPRKLLMTVE  131 (497)
T ss_dssp             HHHHHHHTSCSCS---CCCSSCGGGGHHHHHHHHHHTTCCCTTEEEEEETTTEEEEEESSCBCTTCEEEEEEGGGCEEHH
T ss_pred             HHHHHHHHhcccC---CccccccHHHHHHHHHHHHHCCCCccceEEEEcCCCccEEEEcccCCCCCEEEEcCHHHhCcHH
Confidence            4666665432211   1335566788999999999999987 79999999999999999999999999999999999999


Q ss_pred             cccCCchHHHhhccc--CCChHHHHHHHHHHhhccCCCCchhHHhhcCCCccCcccccHHHHHhccCChHHHHHHHHHHH
Q 011459          211 LVHKSDMYNVLGKIE--GMSSETMLLLWSMKEKHNCGSKFKNYFDSLPKEFHTGLSFGVDAIMALEGTLLLEEIMQAKEH  288 (485)
Q Consensus       211 ~a~~s~l~~~l~~~~--~ls~~~~LaL~Ll~Er~g~~S~W~pYl~~LP~~~~tpl~ws~eel~~L~gT~l~~~~~~~~~~  288 (485)
                      ++..+.+++++....  ...++..|+++|++|+.|++|+|+||+++||+.+++|++|+++|++.|+||+++..+.++.+.
T Consensus       132 ~a~~s~l~~~~~~~~~l~~~~~~~Lal~Ll~E~~~~~S~w~pYl~~LP~~~~~pl~w~~eel~~L~gt~l~~~v~~~~~~  211 (497)
T 3smt_A          132 SAKNSVLGPLYSQDRILQAMGNIALAFHLLCERASPNSFWQPYIQTLPSEYDTPLYFEEDEVRYLQSTQAIHDVFSQYKN  211 (497)
T ss_dssp             HHHTSTTHHHHHHCHHHHHCHHHHHHHHHHHHHTCTTCTTHHHHTTSCSCCCSGGGCCHHHHHTTSSSSHHHHHHHHHHH
T ss_pred             hhhhhhcccccccccccccccHHHHHHHHHHHhcCCCCchHHHHHhCCCCCCCCCcCCHHHHhhccCCcHHHHHHHHHHH
Confidence            987655555543210  112466799999999999999999999999999999999999999999999999999888888


Q ss_pred             HHHHHHHHHHhhhccCCCCC--C-CCCCCHhhHHHHHHHhhcceeeeeecCCC-cceeccccccccCCCCCCCceeeeee
Q 011459          289 LRTQYDELFPRLCNDYPDIF--P-PKFYTWEQFLWACELFYSNSMKIIFADGK-LRTCLIPIAGFLNHSLNPHIVHYGRV  364 (485)
Q Consensus       289 i~~~y~~l~~~L~~~~p~~f--~-~~~~t~e~f~WA~siV~SRaf~~~~~dG~-~~~~LvP~~Dm~NH~~~~~~~~~~~~  364 (485)
                      +.++|..+.+.+ +.+|+.+  + .+.||+++|+||+++|+||+|.++..+|. ...+|||++||+||++.++.+   .+
T Consensus       212 ~~~~~~~~~~~~-~~~p~~~~~~~~~~~t~e~f~wA~~~v~SRa~~~~~~~g~~~~~~LvP~~Dm~NH~~~~~~~---~~  287 (497)
T 3smt_A          212 TARQYAYFYKVI-QTHPHANKLPLKDSFTYEDYRWAVSSVMTRQNQIPTEDGSRVTLALIPLWDMCNHTNGLITT---GY  287 (497)
T ss_dssp             HHHHHHHHHHHC-----CCCCSTTTTCCCHHHHHHHHHHHHHHCEEEECTTSSSEEEEECTTGGGCEECSCSEEE---EE
T ss_pred             HHHHHHHHHHHH-HhCcccccCccccccCHHHHHHhhheEecccccccCcccccccceeechHHhhcCCCcccce---ee
Confidence            899999887765 6777754  2 35799999999999999999999876654 368999999999999987532   35


Q ss_pred             ecCCCeEEEEeccccCCCCeeEeccCCCChHHHHHhcCccCCCCCCCceEEEeeccCCCCcccCCCcccccccccccccc
Q 011459          365 DSATNSLKFPLSRPCNIGEQCCLSYGNFSTSHLITFYGFSPQGDNRYDVIPIDIDVGQADCFEDCPMSNWTTHMVRGTWL  444 (485)
Q Consensus       365 d~~~~~l~l~a~r~i~~GeEVfisYG~~sN~eLLl~YGFv~~~~Np~D~v~L~l~~~~~d~~~~~~~~~~~~~~l~~~~l  444 (485)
                      +.+++.+++++.++|++||||||+||+++|++||++|||+++ +||+|.+.|+++++.+|+.+..|...+..+.+.+   
T Consensus       288 ~~~~~~~~~~a~~~i~~Geei~isYG~~~n~~Ll~~YGFv~~-~Np~D~v~l~l~~~~~d~l~~~K~~~L~~~gl~~---  363 (497)
T 3smt_A          288 NLEDDRCECVALQDFRAGEQIYIFYGTRSNAEFVIHSGFFFD-NNSHDRVKIKLGVSKSDRLYAMKAEVLARAGIPT---  363 (497)
T ss_dssp             ETTTTEEEEEESSCBCTTCEEEECCCSCCHHHHHHHHSCCCT-TCTTCEEEEEEECCTTSTTHHHHHHHHHHTTCCS---
T ss_pred             eccCCeEEEEeCCccCCCCEEEEeCCCCChHHHHHHCCCCCC-CCCCceEEEEecCCCcchhHHHHHHHHHHcCCCc---
Confidence            667889999999999999999999999999999999999999 9999999999999999987653332222221111   


Q ss_pred             ccccccc--CCCCCHHHHHHHHHhcCCCCCchh
Q 011459          445 SKNHNIF--NYGLPSPLLDYLRRVRNPMQYEKT  475 (485)
Q Consensus       445 ~~~~~i~--~~~lP~~LL~~LRil~~~~~~~~~  475 (485)
                      ...|.++  ..++|.+|+++||++++++++.+.
T Consensus       364 ~~~f~l~~~~~~~~~~Ll~~LRvl~~~~~el~~  396 (497)
T 3smt_A          364 SSVFALHFTEPPISAQLLAFLRVFCMTEEELKE  396 (497)
T ss_dssp             EEEEEEESSSSCSCHHHHHHHHHHTCCHHHHHH
T ss_pred             cceeeeecCCCCCCHHHHHHHHHHhCCHHHHHH
Confidence            1123333  357899999999999999876543
>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A* Back     alignment and structure
>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A* Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Back     alignment and structure
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A* Back     alignment and structure
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Back     alignment and structure
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} Back     alignment and structure
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Back     alignment and structure
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Back     alignment and structure
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} Back     alignment and structure
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Back     alignment and structure
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Back     alignment and structure
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A Back     alignment and structure
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* Back     alignment and structure
>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens} Back     alignment and structure
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Back     alignment and structure
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} Back     alignment and structure
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Back     alignment and structure
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Back     alignment and structure
>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A* Back     alignment and structure
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens} Back     alignment and structure
>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens} Back     alignment and structure
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Back     alignment and structure
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Back     alignment and structure
>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens} Back     alignment and structure
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Back     alignment and structure
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Back     alignment and structure
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Back     alignment and structure
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Back     alignment and structure
>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 485
d2h2ja2261 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain 4e-40
d2h2ja1176 a.166.1.1 (A:311-486) RuBisCo LSMT C-terminal, sub 4e-05
>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 261 Back     information, alignment and structure

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: RuBisCo LSMT catalytic domain
domain: RuBisCo LSMT catalytic domain
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score =  143 bits (360), Expect = 4e-40
 Identities = 60/266 (22%), Positives = 115/266 (43%), Gaps = 17/266 (6%)

Query: 156 EKEKCLVQWGESNGVKTK--LEIAYVGGAGRGAVAMEDLRVGDIALEIPVSIILSKDLVH 213
              +   +W +  GV T      A V   G G VA++D+   D+ L++P  + ++ D V 
Sbjct: 3   PAVQTFWKWLQEEGVITAKTPVKASVVTEGLGLVALKDISRNDVILQVPKRLWINPDAVA 62

Query: 214 KSDMYNVLGKIEGMSSETMLLLWSMKEKHNCGSKFKNYFDSLPKEFHTGLSFGVDAIMAL 273
            S++  V  +++   S   ++L+ ++E+    S +K+YF  LP+E  + + +  + +  L
Sbjct: 63  ASEIGRVCSELKPWLS---VILFLIRERSREDSVWKHYFGILPQETDSTIYWSEEELQEL 119

Query: 274 EGTLLLEEIMQAKEHLRTQYDELFPRLCNDYPDIFPPKFYTWEQFLWACELFYSNSMKII 333
           +G+ LL+  +  KE+++ +  +L   +      +FP    T + F WA  +  S +    
Sbjct: 120 QGSQLLKTTVSVKEYVKNECLKLEQEIILPNKRLFPDPV-TLDDFFWAFGILRSRAFSR- 177

Query: 334 FADGKLRTCLIPIAGFLNHSLNPHIVHY-------GRVDSATNSLKFPLSRPCNIGEQCC 386
                    ++P+A  +NHS       +         + S               GEQ  
Sbjct: 178 --LRNENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVY 235

Query: 387 LSYG-NFSTSHLITFYGFSPQGDNRY 411
           + Y  N S + L   YGF    +NR+
Sbjct: 236 IQYDLNKSNAELALDYGFIEPNENRH 261
>d2h2ja1 a.166.1.1 (A:311-486) RuBisCo LSMT C-terminal, substrate-binding domain {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 176 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query485
d2h2ja2261 RuBisCo LSMT catalytic domain {Garden pea (Pisum s 100.0
d2h2ja1176 RuBisCo LSMT C-terminal, substrate-binding domain 97.87
d1ml9a_284 Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} 97.83
d2g46a1119 Viral histone H3 Lysine 27 Methyltransferase {Para 97.62
d2f69a2171 Histone H3 K4-specific methyltransferase SET7/9 ca 97.05
d1mvha_269 SET domain of Clr4 {Fission yeast (Schizosaccharom 96.62
d2h2ja1 176 RuBisCo LSMT C-terminal, substrate-binding domain 95.14
d2g46a1119 Viral histone H3 Lysine 27 Methyltransferase {Para 92.75
d1mvha_269 SET domain of Clr4 {Fission yeast (Schizosaccharom 89.1
d2f69a2171 Histone H3 K4-specific methyltransferase SET7/9 ca 86.3
>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: RuBisCo LSMT catalytic domain
domain: RuBisCo LSMT catalytic domain
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=100.00  E-value=2.9e-45  Score=356.17  Aligned_cols=249  Identities=23%  Similarity=0.377  Sum_probs=211.2

Q ss_pred             hhHHHHHHHHHHCCCee-eEEEEE-eCCCceEEEEccCCCCCCEEEEeccccccCcccccCCchHHHhhcccCCChHHHH
Q 011459          156 EKEKCLVQWGESNGVKT-KLEIAY-VGGAGRGAVAMEDLRVGDIALEIPVSIILSKDLVHKSDMYNVLGKIEGMSSETML  233 (485)
Q Consensus       156 ~~~~~f~~Wl~~~G~~~-~v~i~~-~~~~GrGLvAt~dI~~Ge~ll~IP~~l~it~~~a~~s~l~~~l~~~~~ls~~~~L  233 (485)
                      ++.+.|++|++++|+.. ++.+.. ..+.||||+|+++|++||+|++||.++++|..++..+.+++.+.   ...++..|
T Consensus         3 ~~~~~~~~W~~~~g~~~~~~~~~~~~~~~GrGl~AtrdI~~Ge~il~vP~~~~lt~~~~~~~~~~~~~~---~~~~~~~l   79 (261)
T d2h2ja2           3 PAVQTFWKWLQEEGVITAKTPVKASVVTEGLGLVALKDISRNDVILQVPKRLWINPDAVAASEIGRVCS---ELKPWLSV   79 (261)
T ss_dssp             HHHHHHHHHHHTTTSSCSSCCCEEEEETTEEEEECSSCCCTTCEEEEEEGGGCCSHHHHHTSGGGTTTT---TSCHHHHH
T ss_pred             hHHHHHHHHHHHCCCccCCceEeecCCCceeEEEECCcCCCCCEEEEeChHHhccHHHhhhhHHHHHHh---hcCcHHHH
Confidence            56788999999999987 566544 45779999999999999999999999999998877665554443   45678899


Q ss_pred             HHHHHHhhccCCCCchhHHhhcCCCccCcccccHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCC
Q 011459          234 LLWSMKEKHNCGSKFKNYFDSLPKEFHTGLSFGVDAIMALEGTLLLEEIMQAKEHLRTQYDELFPRLCNDYPDIFPPKFY  313 (485)
Q Consensus       234 aL~Ll~Er~g~~S~W~pYl~~LP~~~~tpl~ws~eel~~L~gT~l~~~~~~~~~~i~~~y~~l~~~L~~~~p~~f~~~~~  313 (485)
                      ++++++|+.+..|.|++|+++||+.+++|++|+.++++.|+++.+...+...++.+.++|..+...+....++.+. ..+
T Consensus        80 ~~~l~~e~~~~~s~~~~y~~~lp~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  158 (261)
T d2h2ja2          80 ILFLIRERSREDSVWKHYFGILPQETDSTIYWSEEELQELQGSQLLKTTVSVKEYVKNECLKLEQEIILPNKRLFP-DPV  158 (261)
T ss_dssp             HHHHHHHHHCTTCTTHHHHTTSCSCCSCGGGCCHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTCC-SCC
T ss_pred             HHHHHHHHhCCCCchhhhhhccccccCCcccCCHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc-Ccc
Confidence            9999999999999999999999999999999999999999999999999999999999999988887666666544 458


Q ss_pred             CHhhHHHHHHHhhcceeeeeecCCCcceeccccccccCCCCCCCceeee-------eeecCCCeEEEEeccccCCCCeeE
Q 011459          314 TWEQFLWACELFYSNSMKIIFADGKLRTCLIPIAGFLNHSLNPHIVHYG-------RVDSATNSLKFPLSRPCNIGEQCC  386 (485)
Q Consensus       314 t~e~f~WA~siV~SRaf~~~~~dG~~~~~LvP~~Dm~NH~~~~~~~~~~-------~~d~~~~~l~l~a~r~i~~GeEVf  386 (485)
                      +++.|.||+++|.||+|..+..   ...+|+|++||+||++.|++.++.       .....++.++++|.|+|++|||||
T Consensus       159 ~~~~~~~a~~~v~sr~~~~~~~---~~~~l~P~~d~~NHsc~pn~~~~~~~~~~~~~~~~~~~~~~l~A~r~I~~GEEI~  235 (261)
T d2h2ja2         159 TLDDFFWAFGILRSRAFSRLRN---ENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVY  235 (261)
T ss_dssp             CHHHHHHHHHHHHHHSBCCC------CCBCCTTGGGCEECSSCCSCCCCCC-----------CEEEEECSSCCCTTSBCE
T ss_pred             CHHHHHHHHHHhhccccccccc---ccccchhhhHHhhcCCCCCcccccccccCcccccCCCcEEEEEECCCCCCCCEEE
Confidence            9999999999999999988643   358999999999999999875421       112346789999999999999999


Q ss_pred             eccCC-CChHHHHHhcCccCCCCCCC
Q 011459          387 LSYGN-FSTSHLITFYGFSPQGDNRY  411 (485)
Q Consensus       387 isYG~-~sN~eLLl~YGFv~~~~Np~  411 (485)
                      |+||+ ++|++||.+||||++.+|||
T Consensus       236 isYG~~~~n~~ll~~yGFv~~~~n~~  261 (261)
T d2h2ja2         236 IQYDLNKSNAELALDYGFIEPNENRH  261 (261)
T ss_dssp             ECSCSSCCHHHHHHHSSCCCSCGGGC
T ss_pred             EecCCCCCHHHHHHhCCCCCCCCCCC
Confidence            99995 79999999999998845997
>d2h2ja1 a.166.1.1 (A:311-486) RuBisCo LSMT C-terminal, substrate-binding domain {Garden pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Back     information, alignment and structure
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Back     information, alignment and structure
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d2h2ja1 a.166.1.1 (A:311-486) RuBisCo LSMT C-terminal, substrate-binding domain {Garden pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Back     information, alignment and structure
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure