Citrus Sinensis ID: 011474

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-----
Protein Sequence
MAKNSETSAMEIDDKKSINSDQIGPKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSLKFTHGRGKYTRKAITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQRIYLIGRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELGKYGDVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALDLFKSKLEAVMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEKKLVIFDKIFTAYHEARGCIRSDLASAGNAENVKDDLFGLDKAVSAVLGQRTIERNQLLVSIVKGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQVCLYLSK
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccEEEHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccEEcccccHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccHHEEEEEcccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccEEEEcccEEEcccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEcc
Coil and Loop (DISEMBL)
maknsetsameiddkksinsdqigpkFSINVLQLLKSAQmqhglrhgdytrYRRYCTARLRRLYKSLKfthgrgkytrkaiTESTVTEVRFLHLVLYTAERAWSHAmekrqlpdgpnaRQRIYLIGRLRKAVKWATLFSNLcaikadprtsLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELgkygdvenQVLCRERVEELEPSIRYCLHkigesnvktsellqigemegpaldLFKSKLEAVMAEARSQQAASLTEFhwlghrfpisnaKTRVAILKAQELEKDLHVKaadslpaekKLVIFDKIFTAYHEARGCIrsdlasagnaenvkdDLFGLDKAVSAVLGQRTIERNQLLVSIVKgkltkqrddktgkvtkpeELVRLYDLLLQNTADLSDLvssgrerkpeevKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQVCLYLSK
Flexible Loop (DISEMBL)
maknsetsameiddkksinsdqigPKFSINVLQLLKSAQmqhglrhgdytryRRYCTARLRRLYkslkfthgrgkytrkaitestvteVRFLHLVLYTAERAWSHAmekrqlpdgpnaRQRIYLIGRLRKAVKWATLFSNLcaikadprTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELgkygdvenqVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALDLFKSKLEAVMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHvkaadslpaekkLVIFDKIFTAYHEARGCIRSDLASAGNAENVKDDLFGLDKAVSAVlgqrtiernqllvsivkgkltkqrddktgkvtkpeelVRLYDLLLQNTADLSDLvssgrerkpeevkfaeecelkslaFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDqvclylsk
Low Complexity Region (SEG)
MAKNSETSAMEIDDKKSINSDQIGPKFSINVLQLLKSAQMQHGLRHGDytryrryctarlrrlyKSLKFTHGRGKYTRKAITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQRIYLIGRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELGKYGDVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALDLFKSKLEAVMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEKKLVIFDKIFTAYHEARGCIRSDLASAGNAENVKDDLFGLDKAVSAVLGQRTIERNQLLVSIVKGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQVCLYLSK
Disordered region (IsUnstruct)
*************************KFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSLKFTHGRGKYTRKAITESTVTEVRFLHLVLYTAERAWSHAM**********ARQRIYLIGRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELGKYGDVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALDLFKSKLEAVMA******AASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEKKLVIFDKIFTAYHEARGCIRSDLASAGNAENVKDDLFGLDKAVSAVLGQRTIERNQLLVSIVKGKL***************ELVRLYDLLLQNTADL****************FAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMA**DQVCLY***
Disordered Region (DISOPRED)
***************************SINVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLY***************AITESTVTEVRFLHLVLYTAERAWSH********************GRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELGKYGDVENQVLCRERVEELEPSIRYCLH************************************************HWLGHRFPISNAKTRVAILKAQELEKD***************VIFDKIFTAYHEARG*******************FGLDKAVSAVLGQRTIERNQLLVSI*********************LVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSH*****************CLYL**
Disordered Region (DISEMBL)
***********IDDKKSINSDQIGPKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSLKFTHGRGKYTRKAITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQRIYLIGRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELGKYGDVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALDLFKSKLEAVM********ASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEKKLVIFDKIFTAYHEARGCIRSDLASAGNAENVKDDLFGLDKAVSAVLGQRTIERNQLLVSIVKGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSD********
Disordered Region (DISPRO)
***********************GPKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSLKFTHGRGKYTRKAITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQRIYLIGRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELGKYGDVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALDLFKSKLEAVMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEKKLVIFDKIFTAYHEARGCIRSDLASAGNAENVKDDLFGLDKAVSAVLGQRTIERNQLLVSIVKGKLTK*****TGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQVCLYLSK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAKNSETSAMEIDDKKSINSDQIGPKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSLKFTHGRGKYTRKAITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQRIYLIGRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELGKYGDVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALDLFKSKLEAVMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEKKLVIFDKIFTAYHEARGCIRSDLASAGNAENVKDDLFGLDKAVSAVLGQRTIERNQLLVSIVKGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQVCLYLSK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	485	2.2.26 [Sep-21-2011]
Q00004	622	Signal recognition partic	yes	no	0.905	0.705	0.360	6e-73
Q8BMA6	625	Signal recognition partic	yes	no	0.901	0.699	0.368	3e-72
Q9UHB9	627	Signal recognition partic	yes	no	0.905	0.700	0.361	9e-72
Q9VSS2	604	Signal recognition partic	yes	no	0.868	0.697	0.338	5e-61
Q20822	622	Probable signal recogniti	yes	no	0.901	0.702	0.287	3e-45
Q1ZXE8	614	Signal recognition partic	yes	no	0.432	0.342	0.345	2e-31
O74436	597	Signal recognition partic	yes	no	0.383	0.311	0.261	0.0002

>sp|Q00004|SRP68_CANFA Signal recognition particle 68 kDa protein OS=Canis familiaris GN=SRP68 PE=1 SV=1

 Score =  275 bits (703), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 169/469 (36%), Positives = 263/469 (56%), Gaps = 30/469 (6%)

Query: 22  QIGPKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSLKFTHG-RGKYTRKA 80
           + G   S+ +LQ++K +Q QHGLRHGD+ RYR YC+ R RRL K+L F  G R K+T K 
Sbjct: 50  EFGDSLSLEILQIIKESQQQHGLRHGDFQRYRGYCSRRQRRLRKTLNFKMGNRHKFTGKK 109

Query: 81  ITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQRIYLIGRLRKAVKWATLFSN 140
           +TE  +T+ R+L LVL  AERAWS+AM+ +Q  +    R+R +L+ RLRKAVK A     
Sbjct: 110 VTEDLLTDNRYLLLVLMDAERAWSYAMQLKQEANT-EPRKRFHLLSRLRKAVKHAEELER 168

Query: 141 LC-AIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELGKYGDVENQ 199
           LC + + D +T LEA+AY +Y+ G L FE  Q W+ A++ F   + +YE+L      E  
Sbjct: 169 LCESNRVDAKTKLEAQAYTAYLSGMLRFEH-QEWKAAIEAFNKCKTIYEKLASAFTEEQA 227

Query: 200 VLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALDLFKSKLEAVMAEARSQQ 259
           VL  +RVEE+ P+IRYC + IG+ +   +EL+Q+    G    L   KLEA++ + R++Q
Sbjct: 228 VLYNQRVEEISPNIRYCAYNIGDQSA-INELMQMRLRSGGTEGLLAEKLEALITQTRAKQ 286

Query: 260 AASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEKKLVIFDKIFTAYH 319
           AA+++E  W G   P+   K R+ +L   + E  +    A +   E K  +F+ + +   
Sbjct: 287 AATMSEVEWRGRTVPVKIDKVRIFLLGLADNEAAI----AQAESEETKERLFESMLSECR 342

Query: 320 EARGCIRSDL------------ASAGNAENVKDDLFGLDKAVSAVLGQRTIERNQLLVSI 367
           +A   +R +L              +G   N++     L   ++ +     I RN+ +   
Sbjct: 343 DAIQAVREELKPDQKQRDYTLDGESGKVSNLQ----YLHSYLTYIKLSTAIRRNENMAKG 398

Query: 368 VKGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELK 427
           ++  L +Q +D++ +  +P++L+RLYD++LQN  +L  L   G E   E+  F +E  LK
Sbjct: 399 LQKALQQQPEDESKRSPRPQDLIRLYDIILQNLVELLQL--PGLE---EDRAFQKEIGLK 453

Query: 428 SLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANS 476
           +L F+A RCF++A+SY L  K +EA  LY R   +A     D     NS
Sbjct: 454 TLVFKAYRCFFIAQSYVLVKKWSEALVLYDRVLKYANEVNSDAGAFRNS 502

Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. SRP68 binds the 7S RNA, SRP72 binds to this complex subsequently. This ribonucleoprotein complex might interact directly with the docking protein in the ER membrane and possibly participate in the elongation arrest function.
Canis familiaris (taxid: 9615)

>sp|Q8BMA6|SRP68_MOUSE Signal recognition particle 68 kDa protein OS=Mus musculus GN=Srp68 PE=2 SV=2

 Score =  272 bits (696), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 173/470 (36%), Positives = 269/470 (57%), Gaps = 33/470 (7%)

Query: 22  QIGPKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSLKFTHG-RGKYTRKA 80
           + G   S+ +LQ++K +Q QHGLRHGD+ RYR YC+ R RRL K+L F  G R K+T K 
Sbjct: 52  EFGDSLSLEILQIIKESQQQHGLRHGDFQRYRGYCSRRQRRLRKTLNFKMGNRHKFTGKK 111

Query: 81  ITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQRIYLIGRLRKAVKWATLFSN 140
           +TE  +T+ R+L LVL  AERAWS+AM+ +Q  +    R+R +L+ RLRKAVK A     
Sbjct: 112 VTEELLTDNRYLLLVLMDAERAWSYAMQLKQEANT-EPRKRFHLLSRLRKAVKHAEELER 170

Query: 141 LC-AIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELGKYGDVENQ 199
           LC + + D +T LEA+AY +Y+ G L FE  Q W++A++ F   + +YE+L      E  
Sbjct: 171 LCESNRVDAKTKLEAQAYTAYLSGMLRFEH-QEWKSAIEAFNKCKTIYEKLASAFTEEQA 229

Query: 200 VLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALDLFKSKLEAVMAEARSQQ 259
           VL  +RVEE+ P+IRYC + IG+ +   +EL+Q+    G    L   KLEA++ + R++Q
Sbjct: 230 VLYNQRVEEISPNIRYCAYNIGDQSA-INELMQMRLRSGGTEGLLAEKLEALITQTRAKQ 288

Query: 260 AASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEKKLVIFDKIFTAYH 319
           AA+++E  W G   P+   K R+ +L   + E  + V+A      E K  +F+ + +   
Sbjct: 289 AATMSEVEWRGRTVPVKIDKVRIFLLGLADNEAAI-VQAESE---ETKERLFESMLSECR 344

Query: 320 EARGCIRSDLAS-------AGNAENVK-DDLFGLDKAVSAVLGQRTIERNQLLV-SIVKG 370
           +A   +R +L         A + E+ K  +L  L   ++ +     I RN+ +   + + 
Sbjct: 345 DALQAVREELKPDQKQRDYALDGESGKVSNLQYLHSYLTYIKLSTAIRRNENMAKGLHRA 404

Query: 371 KLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLA 430
            L +Q +D + +  +P++L+RLYD++LQN  +L  L   G E   E+  F +E  LK+L 
Sbjct: 405 LLQQQPEDDSKRSPRPQDLIRLYDIILQNLVELLQL--PGLE---EDRTFQKEISLKTLV 459

Query: 431 FRAERCFYLARSYSLAGKRTEAYALYCRARSHA----------ENALKDF 470
           F+A RCF++A+SY L  K +EA  LY R   +A          +N+LKD 
Sbjct: 460 FKAYRCFFIAQSYVLVKKWSEALVLYDRVLKYANEVSSHGGASKNSLKDL 509

Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. SRP68 binds the 7S RNA, SRP72 binds to this complex subsequently. This ribonucleoprotein complex might interact directly with the docking protein in the ER membrane and possibly participate in the elongation arrest function.

Mus musculus (taxid: 10090)

>sp|Q9UHB9|SRP68_HUMAN Signal recognition particle 68 kDa protein OS=Homo sapiens GN=SRP68 PE=1 SV=2

 Score =  271 bits (693), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 170/470 (36%), Positives = 263/470 (55%), Gaps = 31/470 (6%)

Query: 22  QIGPKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSLKFTHG-RGKYTRKA 80
           + G   S+ +LQ++K +Q QHGLRHGD+ RYR YC+ R RRL K+L F  G R K+T K 
Sbjct: 53  EFGDSLSLEILQIIKESQQQHGLRHGDFQRYRGYCSRRQRRLRKTLNFKMGNRHKFTGKK 112

Query: 81  ITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQRIYLIGRLRKAVKWATLFSN 140
           +TE  +T+ R+L LVL  AERAWS+AM+ +Q  +    R+R +L+ RLRKAVK A     
Sbjct: 113 VTEELLTDNRYLLLVLMDAERAWSYAMQLKQEANT-EPRKRFHLLSRLRKAVKHAEELER 171

Query: 141 LC-AIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELGKYGDVENQ 199
           LC + + D +T LEA+AY +Y+ G L FE  Q W+ A++ F   + +YE+L      E  
Sbjct: 172 LCESNRVDAKTKLEAQAYTAYLSGMLRFEH-QEWKAAIEAFNKCKTIYEKLASAFTEEQA 230

Query: 200 VLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALDLFKSKLEAVMAEARSQQ 259
           VL  +RVEE+ P+IRYC + IG+ +   +EL+Q+    G    L   KLEA++ + R++Q
Sbjct: 231 VLYNQRVEEISPNIRYCAYNIGDQSA-INELMQMRLRSGGTEGLLAEKLEALITQTRAKQ 289

Query: 260 AASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEKKLVIFDKIFTAYH 319
           AA+++E  W G   P+   K R+ +L   + E  + V+A      E K  +F+ + +   
Sbjct: 290 AATMSEVEWRGRTVPVKIDKVRIFLLGLADNEAAI-VQAESE---ETKERLFESMLSECR 345

Query: 320 EARGCIRSDL------------ASAGNAENVKDDLFGLDKAVSAVLGQRTIERNQLLV-S 366
           +A   +R +L               G   N++     L   ++ +     I+RN+ +   
Sbjct: 346 DAIQVVREELKPDQKQRDYILEGEPGKVSNLQ----YLHSYLTYIKLSTAIKRNENMAKG 401

Query: 367 IVKGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECEL 426
           + +  L +Q +D + +  +P++L+RLYD++LQN  +L  L   G E   E+  F +E  L
Sbjct: 402 LQRALLQQQPEDDSKRSPRPQDLIRLYDIILQNLVELLQL--PGLE---EDKAFQKEIGL 456

Query: 427 KSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANS 476
           K+L F+A RCF++A+SY L  K +EA  LY R   +A     D     NS
Sbjct: 457 KTLVFKAYRCFFIAQSYVLVKKWSEALVLYDRVLKYANEVNSDAGAFKNS 506

Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. SRP68 binds the 7S RNA, SRP72 binds to this complex subsequently. This ribonucleoprotein complex might interact directly with the docking protein in the ER membrane and possibly participate in the elongation arrest function.

Homo sapiens (taxid: 9606)

>sp|Q9VSS2|SRP68_DROME Signal recognition particle 68 kDa protein OS=Drosophila melanogaster GN=Srp68 PE=2 SV=1

 Score =  235 bits (600), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 157/464 (33%), Positives = 253/464 (54%), Gaps = 43/464 (9%)

Query: 27  FSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSLKFTHG-RGKYTRKAITEST 85
           F++ +L ++K AQ QHGLRHGD+ RYR YC+ R+RRL K+LK+  G +  + R+ +T   
Sbjct: 29  FTVEILHMIKDAQQQHGLRHGDFQRYRGYCSRRIRRLRKALKYPQGDKRHFKRRDVTIGQ 88

Query: 86  VT----EVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQRIYLIGRLRKAVKWATLFSNL 141
           +T    + RF+H+ L  AERAW++AM+ +Q       R+R +L+ +LR+A  +A     L
Sbjct: 89  LTGKKADERFIHIPLICAERAWAYAMQLKQ-ESNTEPRKRFHLVNKLRRACFYALQLQEL 147

Query: 142 CAIKA-DPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELGKYGDVENQV 200
           C  +A D RT LE EAY ++M G L FE  Q W+TA ++ K A+ VYE LGK    + Q 
Sbjct: 148 CNTEAFDARTKLECEAYVAWMHGTLHFEL-QLWKTAGEHLKRAQVVYENLGKALPEDEQE 206

Query: 201 LCRERVEELEPSIRYCLHKI--GESNVKTSELLQI---GEMEGPALDLFKSKLEAVMAEA 255
           L R +V E  P++RYC + I  G S  K  E+L++   G +E          L+ ++++ 
Sbjct: 207 LYRAKVNEFTPNLRYCAYNISGGASGGKIDEILELRAQGVLEN---------LDVLVSQT 257

Query: 256 RSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEKKLVIFDKIF 315
           +++ +  L    W G +  +   K R+ +L AQEL+K L    A +   + K+ + ++I 
Sbjct: 258 KTESSEGLQTIDWRGRKVTVRPEKVRLFLLSAQELDKSL----AKTTKQDAKIELIERIL 313

Query: 316 TAYHEARGCIRSD------LASAGNAENVKDDLFGLDKAVSAVLGQRTIERNQLLVSIVK 369
               +A   +R +      L S    + V    + L   +S +   RT++RN  LV   K
Sbjct: 314 MDCKDAIQAVRDEIKQDPKLRSLTTGQTVSGVQYLL-AYLSYIRHSRTLQRNLCLVEQAK 372

Query: 370 -----GKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEEC 424
                  L  Q++   GK  +P++L RLY+++LQN  ++  +  +G E   ++  +  E 
Sbjct: 373 LNFYDPNLQSQQNVGDGKRVRPQDLARLYEIILQNVTEMQQI--NGLE---DDATYQSEV 427

Query: 425 ELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALK 468
           E  ++ F+A RC+Y+A +     K  EA ALY RA ++A  ALK
Sbjct: 428 ENLAITFKAFRCYYIALTLIDIKKWKEAVALYERASNYATEALK 471

Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. Srp68 binds the 7S RNA, Srp72 binds to this complex subsequently. This ribonucleoprotein complex might interact directly with the docking protein in the ER membrane and possibly participate in the elongation arrest function.

Drosophila melanogaster (taxid: 7227)

>sp|Q20822|SRP68_CAEEL Probable signal recognition particle 68 kDa protein OS=Caenorhabditis elegans GN=F55C5.8 PE=3 SV=2

 Score =  183 bits (464), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 135/470 (28%), Positives = 248/470 (52%), Gaps = 33/470 (7%)

Query: 20  SDQIGPKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSLKFTHGRG----- 74
           ++++ P  ++++LQ++K AQ QHGLRHGDY RYR+YC A+L R+ K+LKFT+        
Sbjct: 11  TEELPPFPTVHILQVVKDAQQQHGLRHGDYARYRKYCAAKLERMRKALKFTNSHNCQKKR 70

Query: 75  --KYTRKAITESTVTEVRFLHLVLYTAERAWSHAM-EKRQLPDGP-NARQRIYLIGRLRK 130
             K+ +K ++  +V  V+FL+  ++ +ER ++ AM +K  L D P  +R++  +I  LRK
Sbjct: 71  KAKFVKKWLSVESVQNVQFLNFGIFESERRYAEAMIDKITLEDNPEKSRKKFSMINSLRK 130

Query: 131 AVKWATLFSNLC--AIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYE 188
           AV  AT    +   + + D  T LEA+AYA++M+G   FE  +NW+ A ++ K A+ VYE
Sbjct: 131 AVLHATNLEKIVQESERFDAPTKLEAQAYAAWMRGMCSFES-RNWQKASESLKLAKTVYE 189

Query: 189 ELGK-YGDVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALDLFKSK 247
           +L +   +     + + R  E++P +R C   I ES      + ++ E+     +   S 
Sbjct: 190 KLAEATNNTTLSSIFKGRCREIQPQLRLCEFNIAESPGAVGTMTELMELRMQMGEGGDSS 249

Query: 248 LEAVMAEAR-SQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEK 306
           ++ +++E R S  +A +    W G +  + + K +  + + ++ E    V+ A     ++
Sbjct: 250 VDKLISEMRASATSAEVVTIEWGGAKSTVDDEKAKQVVQEWKQTE----VELAQCQTPKE 305

Query: 307 KLVIFDKIFTAYHEARGCIRSDLASAGNAENVKDDLFGLDKAVSAVLGQRTIERNQLLVS 366
           K+ +F+K      +A   I SD+    ++EN    +    KA    L         L + 
Sbjct: 306 KMALFEKATADTRDAIDRI-SDIIRRKSSENADTTVLQSIKAYLEFLKMNGTASRYLAII 364

Query: 367 IVKGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECEL 426
                     + K+ K +KP++L+RLYD +++   +++++  +  ++        +  E+
Sbjct: 365 ---------DNTKSEKKSKPQDLLRLYDSVIEIYKEVAEIPGADHDK-----NLIQAFEV 410

Query: 427 KSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANS 476
           K   +RA RCFY+A SYS   K +EA AL+ R  S  ++A    +++ +S
Sbjct: 411 KVEYYRAFRCFYMASSYSALHKYSEAAALFDRTVSRVQDAEGKLKKLKSS 460

Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. SRP68 binds the 7S RNA, SRP72 binds to this complex subsequently. This ribonucleoprotein complex might interact directly with the docking protein in the ER membrane and possibly participate in the elongation arrest function.

Caenorhabditis elegans (taxid: 6239)

>sp|Q1ZXE8|SRP68_DICDI Signal recognition particle subunit SRP68 OS=Dictyostelium discoideum GN=srp68 PE=3 SV=1

 Score =  137 bits (345), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 78/226 (34%), Positives = 128/226 (56%), Gaps = 16/226 (7%)

Query: 1   MAKNSETSAMEIDDKKSINSDQIGPKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARL 60
           MA N  TS  E         D    KF +++L   +++Q+Q GLR  DY +YR+YC+ R+
Sbjct: 1   MATNISTSPKE---------DVPKEKFHLDILNFSQTSQIQFGLRLQDYKKYRQYCSKRI 51

Query: 61  RRLYKSLKFTHGRGKYTRKAI-----TESTVTEVRFLHLVLYTAERAWSHAME-KRQLPD 114
           +RL   L+  +G+  Y  K +     TE  + +VR+L + L   ERAWS+AM+ K Q   
Sbjct: 52  QRLRSQLRKQYGKKNYVNKIVLNGGETEKQINDVRYLQISLLKTERAWSYAMDLKAQFEK 111

Query: 115 GPNARQRIYLIGRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWE 174
             ++R   ++  R  KA + +T    LC + AD  T +EA AY+S+M  +L   + Q+++
Sbjct: 112 DNDSRIGFHMNRRFGKASRNSTQLYELCKLVADQYTIIEAHAYSSWMASSLSLTK-QDFK 170

Query: 175 TALKNFKSARAVYEELGKYGDVENQVLCRERVEELEPSIRYCLHKI 220
            AL+    ++ +YE+L + GD   + L ++R+EE EP IR+CL+ +
Sbjct: 171 KALEEINISKTIYEKLSEQGDHSQKELYQKRIEETEPIIRFCLYNL 216

Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. Srp68 binds the 7S RNA, srp72 binds to this complex subsequently. This ribonucleoprotein complex might interact directly with the docking protein in the ER membrane and possibly participate in the elongation arrest function.

Dictyostelium discoideum (taxid: 44689)

>sp|O74436|SRP68_SCHPO Signal recognition particle subunit srp68 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=srp68 PE=3 SV=1

 Score = 47.4 bits (111), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 101/214 (47%), Gaps = 28/214 (13%)

Query: 31  VLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSLKFTHGRGKYTRKAITESTVTEVR 90
           +  LL  A+  H     +Y +Y    + R+  L KSL  T   GK       +S+V + R
Sbjct: 61  IFPLLLEARSDHFYEGNEYIKY---LSHRIHGLRKSLHITQRGGK------PKSSVDK-R 110

Query: 91  FLHLVLYTAERAWSHAMEKRQLPDGPNARQRIYLIGRLRKAVKWA---TLFSNLCAIKAD 147
           +  ++L+ A+RA+   +  R       + QR + + RL++A ++      F+N      D
Sbjct: 111 YAEILLFNADRAFQQFVFLR-------SSQRRHALRRLKRADQFGKELVSFTNAFDCN-D 162

Query: 148 PRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELGKYGDV----ENQVLCR 203
               LEA A+A Y++G L +E+ ++WE +L  F  +R  +  L    D     E  VL  
Sbjct: 163 HIFYLEAIAFAKYIEGTLNYEK-RDWEGSLSAFSISRLSFLVLQNKIDTLAEHEKSVLG- 220

Query: 204 ERVEELEPSIRYCLHKIGESN-VKTSELLQIGEM 236
           E   +++ ++RY   + G  N  K+ ++L +  +
Sbjct: 221 ELQNQIDSNLRYVAQRTGLQNQTKSLDILMLSSI 254

Signal-recognition-particle (SRP) assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum (ER) membrane. SRP is required for the cotranslational protein translocation for ER import and preferentially recognizes strongly hydrophobic signal sequences. It is involved in targeting the nascent chain-ribosome (RNC) complex to the ER and is proposed to participate in the arrest of nascent chain elongation during membrane targeting. Srp68 binds the 7S RNA.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	485
255540061	594	Signal recognition particle 68 kDa prote	0.975	0.796	0.852	0.0
224136328	601	predicted protein [Populus trichocarpa]	0.991	0.800	0.839	0.0
357520603	603	Signal recognition particle 68 kDa prote	0.975	0.784	0.818	0.0
224122166	602	predicted protein [Populus trichocarpa]	0.985	0.794	0.830	0.0
356513465	603	PREDICTED: signal recognition particle 6	0.991	0.797	0.806	0.0
225456479	595	PREDICTED: signal recognition particle 6	0.979	0.798	0.829	0.0
356527514	603	PREDICTED: signal recognition particle 6	0.991	0.797	0.806	0.0
18424534	605	signal recognition particle subunit SRP6	0.981	0.786	0.810	0.0
297793755	608	hypothetical protein ARALYDRAFT_496370 [	0.981	0.782	0.810	0.0
449476147	594	PREDICTED: signal recognition particle 6	0.967	0.789	0.812	0.0

>gi|255540061|ref|XP_002511095.1| Signal recognition particle 68 kDa protein, putative [Ricinus communis] gi|223550210|gb|EEF51697.1| Signal recognition particle 68 kDa protein, putative [Ricinus communis]

 Score =  847 bits (2189), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/473 (85%), Positives = 441/473 (93%)

Query: 9   AMEIDDKKSINSDQIGPKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSLK 68
           AM+ID  KS NS+QI P++SINVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSLK
Sbjct: 2   AMDIDGPKSNNSEQISPRYSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSLK 61

Query: 69  FTHGRGKYTRKAITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQRIYLIGRL 128
           FTHGRGKYTR+AITESTVTEVRFLHLVLY+AERAWSHAMEKRQLPDGPNARQRIYLIGRL
Sbjct: 62  FTHGRGKYTRRAITESTVTEVRFLHLVLYSAERAWSHAMEKRQLPDGPNARQRIYLIGRL 121

Query: 129 RKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYE 188
           RKAV+WA LFS LCA K D RTSLEAEAYA+YM GNLLFEQD+NW+TALKNF SARAVYE
Sbjct: 122 RKAVQWANLFSQLCAAKGDSRTSLEAEAYAAYMNGNLLFEQDRNWDTALKNFISARAVYE 181

Query: 189 ELGKYGDVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALDLFKSKL 248
           ELGKYGD+ENQVLCRERVEELEPSIRYC HKIG+SN++TS+LLQIGEMEGPALDLFK+KL
Sbjct: 182 ELGKYGDLENQVLCRERVEELEPSIRYCRHKIGQSNLQTSDLLQIGEMEGPALDLFKTKL 241

Query: 249 EAVMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEKKL 308
           EAVMAEARSQQAASLTEFHWLGH+FPISNAKTRVAILKAQELEKDLH  AADSLPAEKKL
Sbjct: 242 EAVMAEARSQQAASLTEFHWLGHKFPISNAKTRVAILKAQELEKDLHGSAADSLPAEKKL 301

Query: 309 VIFDKIFTAYHEARGCIRSDLASAGNAENVKDDLFGLDKAVSAVLGQRTIERNQLLVSIV 368
           V+FDKIF AYHEAR CIRSDL SAGNA++VKDDL GLDKAVSAVLGQRTIERNQLLVSI 
Sbjct: 302 VVFDKIFAAYHEARSCIRSDLVSAGNADSVKDDLSGLDKAVSAVLGQRTIERNQLLVSIA 361

Query: 369 KGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKS 428
           K K  K+RDDK  K+T+PEELVRLYDLLLQNT+DLSDLVSSGR+ KPEEV F+E+C L+S
Sbjct: 362 KSKFIKRRDDKNEKLTRPEELVRLYDLLLQNTSDLSDLVSSGRDTKPEEVAFSEDCALRS 421

Query: 429 LAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQVCL 481
           LAFRA+RCFYLA+SYSLAGKRTEAY+LYCRARS +ENAL+ FQ + N+D++ +
Sbjct: 422 LAFRAQRCFYLAKSYSLAGKRTEAYSLYCRARSLSENALQKFQSLNNTDEIMV 474

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136328|ref|XP_002322302.1| predicted protein [Populus trichocarpa] gi|222869298|gb|EEF06429.1| predicted protein [Populus trichocarpa]

 Score =  838 bits (2165), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/481 (83%), Positives = 437/481 (90%)

Query: 1   MAKNSETSAMEIDDKKSINSDQIGPKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARL 60
           M K +E  AME+D  KS NSDQI P++SINVLQLLKSAQMQHGLRHGDY RYRRYCTARL
Sbjct: 1   MGKENEAIAMEVDGPKSNNSDQINPRYSINVLQLLKSAQMQHGLRHGDYARYRRYCTARL 60

Query: 61  RRLYKSLKFTHGRGKYTRKAITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQ 120
           RRLYKSLKFTHGRGKYTR+AI ESTVTEVR+LH+VLYTAERAWSHAMEKRQL DGPNA+Q
Sbjct: 61  RRLYKSLKFTHGRGKYTRRAINESTVTEVRYLHMVLYTAERAWSHAMEKRQLLDGPNAKQ 120

Query: 121 RIYLIGRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNF 180
           RIYLIGRLRKAVKWA LFS LCA K D RTSLEAEAYASYM G LLFEQD+NW+TALKNF
Sbjct: 121 RIYLIGRLRKAVKWADLFSGLCAAKGDSRTSLEAEAYASYMNGLLLFEQDRNWDTALKNF 180

Query: 181 KSARAVYEELGKYGDVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPA 240
            S+RAVYEELGKYGD+ENQVLCRERVEELEPSIRYC HKIGESN+KTSELLQIGEMEGPA
Sbjct: 181 ISSRAVYEELGKYGDLENQVLCRERVEELEPSIRYCRHKIGESNLKTSELLQIGEMEGPA 240

Query: 241 LDLFKSKLEAVMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAAD 300
           LDLFK+KLEA MAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLH   AD
Sbjct: 241 LDLFKAKLEAAMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHGPTAD 300

Query: 301 SLPAEKKLVIFDKIFTAYHEARGCIRSDLASAGNAENVKDDLFGLDKAVSAVLGQRTIER 360
           S+PAEKKL +FDKIFTAYHEAR  IRSDL SAGNA++VKD+L GLDKAVSAVLGQRTIER
Sbjct: 301 SIPAEKKLAVFDKIFTAYHEARSFIRSDLVSAGNADSVKDELNGLDKAVSAVLGQRTIER 360

Query: 361 NQLLVSIVKGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKF 420
           NQLLVSI K KLT++RDDK  KVTKPEELVRLYDLLLQNTADLSDLVSSGR+RKPEEV+F
Sbjct: 361 NQLLVSIAKSKLTRRRDDKNEKVTKPEELVRLYDLLLQNTADLSDLVSSGRDRKPEEVEF 420

Query: 421 AEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQVC 480
            E+C+L+S AFRA+RCFYLA+SYS AGKR EAY LYC ARS AENALK FQ + ++D+V 
Sbjct: 421 TEDCDLRSTAFRAQRCFYLAKSYSSAGKRAEAYVLYCHARSLAENALKKFQTVTSTDEVT 480

Query: 481 L 481
           +
Sbjct: 481 I 481

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357520603|ref|XP_003630590.1| Signal recognition particle 68 kDa protein [Medicago truncatula] gi|355524612|gb|AET05066.1| Signal recognition particle 68 kDa protein [Medicago truncatula]

 Score =  822 bits (2123), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/473 (81%), Positives = 434/473 (91%)

Query: 1   MAKNSETSAMEIDDKKSINSDQIGPKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARL 60
           M K +++SAME+DD KS NSDQI PKFSI VLQLLKSAQMQHGLRHGDYTRYRRYCTARL
Sbjct: 1   MGKENQSSAMEVDDPKSTNSDQIVPKFSITVLQLLKSAQMQHGLRHGDYTRYRRYCTARL 60

Query: 61  RRLYKSLKFTHGRGKYTRKAITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQ 120
           RRLYKSLKFTHGRGKYT++ +TES VTEVRFLH++LY+AERAWSHAMEKRQLP+GPNA Q
Sbjct: 61  RRLYKSLKFTHGRGKYTKRTLTESNVTEVRFLHVILYSAERAWSHAMEKRQLPNGPNASQ 120

Query: 121 RIYLIGRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNF 180
           RIYLIGRLRKAVKWATLFS  CA+KAD RTSLEAEAY SYMKG+LLFEQDQNW+ ALK+F
Sbjct: 121 RIYLIGRLRKAVKWATLFSQFCAVKADSRTSLEAEAYESYMKGSLLFEQDQNWDVALKHF 180

Query: 181 KSARAVYEELGKYGDVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPA 240
           KSARAVYEELGKYGD++NQVLCRERVEELEPSIRYCLHKIG+SN++ SELL IG+MEGPA
Sbjct: 181 KSARAVYEELGKYGDLDNQVLCRERVEELEPSIRYCLHKIGQSNLQASELLNIGDMEGPA 240

Query: 241 LDLFKSKLEAVMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAAD 300
           LDLFK+KLEA MAEARSQQAAS+TEFHWLGHRFPISNAKTRVAILKAQELEKD+H   A+
Sbjct: 241 LDLFKAKLEAAMAEARSQQAASMTEFHWLGHRFPISNAKTRVAILKAQELEKDIHGPLAE 300

Query: 301 SLPAEKKLVIFDKIFTAYHEARGCIRSDLASAGNAENVKDDLFGLDKAVSAVLGQRTIER 360
           ++ A+K+LV FDKIF+AYH+ARGCIR+DLA+AGNAE+VKDDL GLDKAVSAVLG+RTIER
Sbjct: 301 NISADKRLVTFDKIFSAYHDARGCIRADLATAGNAESVKDDLNGLDKAVSAVLGERTIER 360

Query: 361 NQLLVSIVKGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKF 420
           N LLV + K KL K+ DDK  K+TKPEELVRLYDLLLQNT+DLSDLVSSGR++KPEEV F
Sbjct: 361 NLLLVKVAKSKLAKRNDDKNEKLTKPEELVRLYDLLLQNTSDLSDLVSSGRDQKPEEVSF 420

Query: 421 AEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRM 473
           AEEC  KSLAFRAERCFY+A+SYS+AGKR EAYALYCRARS AE+AL   Q++
Sbjct: 421 AEECSCKSLAFRAERCFYVAKSYSVAGKRAEAYALYCRARSLAEDALGKLQKL 473

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122166|ref|XP_002318768.1| predicted protein [Populus trichocarpa] gi|222859441|gb|EEE96988.1| predicted protein [Populus trichocarpa]

 Score =  818 bits (2112), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/479 (83%), Positives = 430/479 (89%), Gaps = 1/479 (0%)

Query: 1   MAKNSETSAMEIDDKKSINSDQIGPKFSIN-VLQLLKSAQMQHGLRHGDYTRYRRYCTAR 59
           M K +E +AMEI+  K  NSDQI P++SIN +LQLLKSAQMQHGLRHGDY RYRRYC AR
Sbjct: 1   MVKENEVAAMEIEGPKPNNSDQINPRYSINGILQLLKSAQMQHGLRHGDYARYRRYCIAR 60

Query: 60  LRRLYKSLKFTHGRGKYTRKAITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNAR 119
           LRRLYKSLKFTHGRGKYTR+A+ ESTVTEVR+LHLVLYTAERAWSHAMEKRQL DGPNA+
Sbjct: 61  LRRLYKSLKFTHGRGKYTRRAMNESTVTEVRYLHLVLYTAERAWSHAMEKRQLLDGPNAK 120

Query: 120 QRIYLIGRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKN 179
           QRIYLIGRLRKAVKWA LFS LCA K D RTSLEAEAYAS M G LLFEQD+NW+TALKN
Sbjct: 121 QRIYLIGRLRKAVKWADLFSRLCAAKGDSRTSLEAEAYASCMNGLLLFEQDRNWDTALKN 180

Query: 180 FKSARAVYEELGKYGDVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGP 239
           F SARAVYEELGKYGD+ENQVLCRERVEELEPS+RYC HKIGESN+KTSELLQIGEMEGP
Sbjct: 181 FISARAVYEELGKYGDLENQVLCRERVEELEPSVRYCRHKIGESNLKTSELLQIGEMEGP 240

Query: 240 ALDLFKSKLEAVMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAA 299
           ALDLFK+KLEA MAEARSQQAASLTEF WLGHRFPISNAKTRV+ILKAQELEKDLH  AA
Sbjct: 241 ALDLFKAKLEAAMAEARSQQAASLTEFRWLGHRFPISNAKTRVSILKAQELEKDLHGPAA 300

Query: 300 DSLPAEKKLVIFDKIFTAYHEARGCIRSDLASAGNAENVKDDLFGLDKAVSAVLGQRTIE 359
           DSLP EKKL +FDKI+TAY EAR  IRSDLASAGNA++VKDDL GLDKAV AVLGQRTIE
Sbjct: 301 DSLPVEKKLAVFDKIYTAYQEARSFIRSDLASAGNADSVKDDLNGLDKAVGAVLGQRTIE 360

Query: 360 RNQLLVSIVKGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVK 419
           RNQLLVSI K KL + RDDK  KVTKPEELVRLYDLLLQNT DLSDLVSSGR+RKPEEV 
Sbjct: 361 RNQLLVSIAKSKLARHRDDKNEKVTKPEELVRLYDLLLQNTGDLSDLVSSGRDRKPEEVA 420

Query: 420 FAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQ 478
           F+E+C L+S+AFRA+RCFYLA+SYS AGKRTEAYALYC ARS AENALK FQ M ++D+
Sbjct: 421 FSEDCVLRSMAFRAQRCFYLAKSYSSAGKRTEAYALYCHARSLAENALKKFQTMMDTDE 479

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513465|ref|XP_003525434.1| PREDICTED: signal recognition particle 68 kDa protein-like [Glycine max]

 Score =  816 bits (2108), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/481 (80%), Positives = 437/481 (90%)

Query: 1   MAKNSETSAMEIDDKKSINSDQIGPKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARL 60
           M K S+TSAMEID  KS+NSD I PKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARL
Sbjct: 1   MGKESQTSAMEIDAPKSMNSDLIVPKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARL 60

Query: 61  RRLYKSLKFTHGRGKYTRKAITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQ 120
           RRLYKSLKFTHGRGKY ++A+TESTVTEVRFLH++LYTAERAWSHAMEKRQLP+GPNARQ
Sbjct: 61  RRLYKSLKFTHGRGKYAKRALTESTVTEVRFLHVILYTAERAWSHAMEKRQLPNGPNARQ 120

Query: 121 RIYLIGRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNF 180
           RIYLIGRLRKAVKWATLFS LCA+KAD RTSLEAEAY SYMKG+LLFEQDQNW+ ALKNF
Sbjct: 121 RIYLIGRLRKAVKWATLFSQLCAVKADSRTSLEAEAYESYMKGSLLFEQDQNWDVALKNF 180

Query: 181 KSARAVYEELGKYGDVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPA 240
           KSARAVYEELGKYGD++NQVLCRERVEELEPSIRYCLHKIG+S+++ SELLQI ++EGPA
Sbjct: 181 KSARAVYEELGKYGDLDNQVLCRERVEELEPSIRYCLHKIGQSDLQASELLQISDVEGPA 240

Query: 241 LDLFKSKLEAVMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAAD 300
           LDLFK+KLEA MAEARSQQAAS+TEF WLGHRFPISNAKTRV+ILKAQELEKD+H   AD
Sbjct: 241 LDLFKAKLEAAMAEARSQQAASMTEFLWLGHRFPISNAKTRVSILKAQELEKDIHGPLAD 300

Query: 301 SLPAEKKLVIFDKIFTAYHEARGCIRSDLASAGNAENVKDDLFGLDKAVSAVLGQRTIER 360
           S+PA+K+LVIFDKIF+AYHEARG IR+DLA+ G+ E+VKDDL GLDKAVSAVLG+RTI+R
Sbjct: 301 SIPADKRLVIFDKIFSAYHEARGYIRADLATTGSTESVKDDLNGLDKAVSAVLGERTIDR 360

Query: 361 NQLLVSIVKGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKF 420
           N LLV + K KL K+ DDK  K+TKPEELVRLYDLLLQNT DLSDLVSSGR++KPEEV F
Sbjct: 361 NLLLVKVAKSKLAKRHDDKNEKLTKPEELVRLYDLLLQNTGDLSDLVSSGRDKKPEEVIF 420

Query: 421 AEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQVC 480
           AE C  KSLAFRA+RCFY+A+SYS+AGKR EAYALYCRAR+ A++ALK FQ +   ++  
Sbjct: 421 AEVCSCKSLAFRAQRCFYVAKSYSVAGKRAEAYALYCRARNLADDALKKFQMLDGDNKTM 480

Query: 481 L 481
           +
Sbjct: 481 M 481

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456479|ref|XP_002284577.1| PREDICTED: signal recognition particle 68 kDa protein [Vitis vinifera] gi|147791928|emb|CAN67894.1| hypothetical protein VITISV_040392 [Vitis vinifera] gi|297734504|emb|CBI15751.3| unnamed protein product [Vitis vinifera]

 Score =  815 bits (2106), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/481 (82%), Positives = 430/481 (89%), Gaps = 6/481 (1%)

Query: 1   MAKNSETSAMEIDDKKSINSDQIGPKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARL 60
           M K ++ S M+IDD+KS NSD   PKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARL
Sbjct: 1   MGKENQVSDMQIDDQKS-NSDHANPKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARL 59

Query: 61  RRLYKSLKFTHGRGKYTRKAITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQ 120
           RRLYKSLKFTHGRGKYTR++ITESTVTEVRFLHL+LYTAERAWSHAMEKRQLPDGPNARQ
Sbjct: 60  RRLYKSLKFTHGRGKYTRRSITESTVTEVRFLHLILYTAERAWSHAMEKRQLPDGPNARQ 119

Query: 121 RIYLIGRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNF 180
           RIYLIGRLRKAVKWATLFS LCAIK D +TSLEAEAYASYMKG LLFEQDQNW+ ALK F
Sbjct: 120 RIYLIGRLRKAVKWATLFSQLCAIKGDSKTSLEAEAYASYMKGTLLFEQDQNWDMALKLF 179

Query: 181 KSARAVYEELGKYGDVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPA 240
           KS+RAVYEELGKYGD+ENQVLCRERVEELEPSIRYCLHKIG SN  T ELL    MEGPA
Sbjct: 180 KSSRAVYEELGKYGDLENQVLCRERVEELEPSIRYCLHKIGASNSLTPELLH---MEGPA 236

Query: 241 LDLFKSKLEAVMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAAD 300
           LDLF++KLEAVMAEARSQQAAS+TEFHWLGHRFPISNAKTRV+ILKAQ+LEKDLH  AAD
Sbjct: 237 LDLFRAKLEAVMAEARSQQAASMTEFHWLGHRFPISNAKTRVSILKAQDLEKDLHGPAAD 296

Query: 301 SLPAEKKLVIFDKIFTAYHEARGCIRSDLASAGNAENVKDDLFGLDKAVSAVLGQRTIER 360
           SLPAEKKL IFDKIFTAYHEAR  IR+DL +AG+A N+KDDL GLDKAVSAVLG+RTIER
Sbjct: 297 SLPAEKKLGIFDKIFTAYHEARSSIRNDLVTAGSAGNMKDDLNGLDKAVSAVLGERTIER 356

Query: 361 NQLLVSIVKGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKF 420
           NQLL+ I K KLTKQ  +K  K TKPEELVRLYDLLLQN ADLSDLVSSGR+RKPEEV F
Sbjct: 357 NQLLIRIAKSKLTKQ--EKNEKATKPEELVRLYDLLLQNVADLSDLVSSGRDRKPEEVSF 414

Query: 421 AEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQVC 480
            EEC LKSLAFRAERCFYLA+SYSLAGKRTEAYALY  ARS A++AL+  Q  +N+DQ  
Sbjct: 415 TEECALKSLAFRAERCFYLAKSYSLAGKRTEAYALYSHARSLADDALQKLQASSNNDQTL 474

Query: 481 L 481
           +
Sbjct: 475 I 475

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527514|ref|XP_003532354.1| PREDICTED: signal recognition particle 68 kDa protein-like [Glycine max]

 Score =  815 bits (2105), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/481 (80%), Positives = 436/481 (90%)

Query: 1   MAKNSETSAMEIDDKKSINSDQIGPKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARL 60
           M K S  SAMEID  KS +SDQI PKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARL
Sbjct: 1   MGKESRASAMEIDAPKSTSSDQIVPKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARL 60

Query: 61  RRLYKSLKFTHGRGKYTRKAITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQ 120
           RRLYKSLKFTHGRGKY +KA+TESTVTEVRFLH++LYTAERAWSHAMEKRQLP+GPNARQ
Sbjct: 61  RRLYKSLKFTHGRGKYAKKALTESTVTEVRFLHVILYTAERAWSHAMEKRQLPNGPNARQ 120

Query: 121 RIYLIGRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNF 180
           RIYLIGRLRKAVKWATLFS LCA+KAD RTSLEAEAY SYMKG+LLFEQDQNW+ ALKNF
Sbjct: 121 RIYLIGRLRKAVKWATLFSLLCAVKADSRTSLEAEAYESYMKGSLLFEQDQNWDVALKNF 180

Query: 181 KSARAVYEELGKYGDVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPA 240
           KSARAVYEELGKYGD++NQVLCRERVEELEPSIRYCLHKIG+SN++ SELLQIG++EGPA
Sbjct: 181 KSARAVYEELGKYGDLDNQVLCRERVEELEPSIRYCLHKIGQSNLQASELLQIGDVEGPA 240

Query: 241 LDLFKSKLEAVMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAAD 300
           LDLFK+KLEA MAEARSQQAAS+TEF WLGHRFPISNAKTRV+ILK+QELEKD+H   AD
Sbjct: 241 LDLFKAKLEAAMAEARSQQAASMTEFIWLGHRFPISNAKTRVSILKSQELEKDVHGPLAD 300

Query: 301 SLPAEKKLVIFDKIFTAYHEARGCIRSDLASAGNAENVKDDLFGLDKAVSAVLGQRTIER 360
           S+PA+K+LVIFDKIF+AYHEARG IR+DLA+ G+ E+VKDDL GLDKAVSAVLG+RTIER
Sbjct: 301 SIPADKRLVIFDKIFSAYHEARGYIRADLATTGSTESVKDDLNGLDKAVSAVLGERTIER 360

Query: 361 NQLLVSIVKGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKF 420
           N LLV + K KL  + DDK  K+TKPEELVRLYDLLLQNTADLSDLV+SGR++KPEEV F
Sbjct: 361 NLLLVKVAKSKLANRHDDKNEKLTKPEELVRLYDLLLQNTADLSDLVNSGRDKKPEEVSF 420

Query: 421 AEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQVC 480
           AE C  KSLAFRA+RCFY+A+SYS+AGKR EAYALYCRA + A++ALK FQ +   +++ 
Sbjct: 421 AEVCSYKSLAFRAQRCFYVAKSYSVAGKRAEAYALYCRAHNLADDALKKFQMLDGDNKIM 480

Query: 481 L 481
           +
Sbjct: 481 M 481

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18424534|ref|NP_568947.1| signal recognition particle subunit SRP68 [Arabidopsis thaliana] gi|9758397|dbj|BAB08884.1| signal recognition particle 68kD protein-like [Arabidopsis thaliana] gi|15293137|gb|AAK93679.1| putative signal recognition particle protein [Arabidopsis thaliana] gi|19310613|gb|AAL85037.1| putative signal recognition particle protein [Arabidopsis thaliana] gi|332010161|gb|AED97544.1| signal recognition particle subunit SRP68 [Arabidopsis thaliana]

 Score =  810 bits (2093), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/476 (81%), Positives = 427/476 (89%)

Query: 3   KNSETSAMEIDDKKSINSDQIGPKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRR 62
           K SE SAMEIDD KS +SDQI P+FSINVLQL+KS+Q QHGLRHGDY RYRRYC+ARLRR
Sbjct: 4   KQSEISAMEIDDPKSESSDQILPRFSINVLQLMKSSQAQHGLRHGDYARYRRYCSARLRR 63

Query: 63  LYKSLKFTHGRGKYTRKAITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQRI 122
           LYKSLKFTHGRGKYTR+AI ESTVT+VRFLH+V Y AERAWSHAMEKRQLPDGPNARQRI
Sbjct: 64  LYKSLKFTHGRGKYTRRAILESTVTDVRFLHVVFYMAERAWSHAMEKRQLPDGPNARQRI 123

Query: 123 YLIGRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKS 182
           YL+GRLRKAVKWA+LFS+LC+IK D RTSLEAEAYASYMKG LLFEQDQNWET L  FK+
Sbjct: 124 YLVGRLRKAVKWASLFSSLCSIKTDSRTSLEAEAYASYMKGTLLFEQDQNWETGLACFKN 183

Query: 183 ARAVYEELGKYGDVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALD 242
           ARAVYEELGKYGD+ENQVLCRERVEELEPSIRYCLHKIG+SN++TSELLQIGEMEGPALD
Sbjct: 184 ARAVYEELGKYGDLENQVLCRERVEELEPSIRYCLHKIGKSNLQTSELLQIGEMEGPALD 243

Query: 243 LFKSKLEAVMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSL 302
           LFK+K+EA M EARSQQAASLTEF WLG+RFP+SN K+RV+ILKAQELEK+L    A+SL
Sbjct: 244 LFKAKIEAAMEEARSQQAASLTEFSWLGYRFPVSNPKSRVSILKAQELEKELQSPTAESL 303

Query: 303 PAEKKLVIFDKIFTAYHEARGCIRSDLASAGNAENVKDDLFGLDKAVSAVLGQRTIERNQ 362
           PAEKKL IFDK+FTAYH+AR  IRSDL SAGNAE+VKDDL GLDKAV AVLGQRTIERNQ
Sbjct: 304 PAEKKLTIFDKLFTAYHDARNTIRSDLVSAGNAESVKDDLNGLDKAVGAVLGQRTIERNQ 363

Query: 363 LLVSIVKGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAE 422
           LLV + K KL ++RDDK  KVT+PEELVRLYDLLLQN ADLSDL+SSGR+RKPEE+ F E
Sbjct: 364 LLVKVAKSKLNRKRDDKNDKVTRPEELVRLYDLLLQNVADLSDLISSGRDRKPEEIAFEE 423

Query: 423 ECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQ 478
           EC+  SLAFRAERCFYLA+SYSLAGKR EA+ALY RARS AE+AL  FQ +A  D+
Sbjct: 424 ECQRTSLAFRAERCFYLAKSYSLAGKRAEAFALYSRARSLAEDALNKFQSIAKKDE 479

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297793755|ref|XP_002864762.1| hypothetical protein ARALYDRAFT_496370 [Arabidopsis lyrata subsp. lyrata] gi|297310597|gb|EFH41021.1| hypothetical protein ARALYDRAFT_496370 [Arabidopsis lyrata subsp. lyrata]

 Score =  809 bits (2090), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/476 (81%), Positives = 429/476 (90%)

Query: 3   KNSETSAMEIDDKKSINSDQIGPKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRR 62
           K SE SAMEIDD KS +SDQI P+FSINVLQL+KS+Q QHGLRHGDY RYRRYC+ARLRR
Sbjct: 4   KESEVSAMEIDDPKSESSDQILPRFSINVLQLMKSSQAQHGLRHGDYARYRRYCSARLRR 63

Query: 63  LYKSLKFTHGRGKYTRKAITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQRI 122
           LYKSLKFTHGRGKYTR+AI ESTVT+VRFLH+V Y AERAWSHAMEKRQLPDGPNARQRI
Sbjct: 64  LYKSLKFTHGRGKYTRRAILESTVTDVRFLHVVFYMAERAWSHAMEKRQLPDGPNARQRI 123

Query: 123 YLIGRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKS 182
           YL+GRLRKAVKWA+LFS+LC+IK D RTSLEAEAYASYMKG LLFEQDQNWET L  FK+
Sbjct: 124 YLVGRLRKAVKWASLFSSLCSIKTDSRTSLEAEAYASYMKGTLLFEQDQNWETGLACFKN 183

Query: 183 ARAVYEELGKYGDVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALD 242
           ARAVYEELGKYGD+ENQVLCRERVEELEPSIRYCLHKIG+SN++TSELLQIGEMEGPALD
Sbjct: 184 ARAVYEELGKYGDLENQVLCRERVEELEPSIRYCLHKIGKSNLQTSELLQIGEMEGPALD 243

Query: 243 LFKSKLEAVMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSL 302
           LFK+K+EA M EARSQQAASLTEF+WLG+RFP+SN K+RV+ILKAQELEK+L    A+SL
Sbjct: 244 LFKAKIEAAMEEARSQQAASLTEFNWLGYRFPVSNPKSRVSILKAQELEKELQGPTAESL 303

Query: 303 PAEKKLVIFDKIFTAYHEARGCIRSDLASAGNAENVKDDLFGLDKAVSAVLGQRTIERNQ 362
           P EKKL IFDK+FTAYH+AR  IR+DL SAGNAE+VKDDL GLDKAV AVLGQRTIERNQ
Sbjct: 304 PVEKKLTIFDKLFTAYHDARNTIRNDLVSAGNAESVKDDLNGLDKAVGAVLGQRTIERNQ 363

Query: 363 LLVSIVKGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAE 422
           LLV I K KL ++RDDK+ KVT+PEELVRLYDLLLQN ADLSDL+SSGR+RKPEE+ F E
Sbjct: 364 LLVKIAKSKLNRKRDDKSEKVTRPEELVRLYDLLLQNVADLSDLISSGRDRKPEEIAFEE 423

Query: 423 ECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQ 478
           EC+ KSLAFRAERCFYLA+SYSLAGKR EA+ALY RARS AE+AL  FQ +A  D+
Sbjct: 424 ECQRKSLAFRAERCFYLAKSYSLAGKRAEAFALYSRARSLAEDALNKFQSIAKKDE 479

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449476147|ref|XP_004154654.1| PREDICTED: signal recognition particle 68 kDa protein-like [Cucumis sativus]

 Score =  792 bits (2045), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/470 (81%), Positives = 418/470 (88%), Gaps = 1/470 (0%)

Query: 8   SAMEIDDKKSINSDQIGPKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSL 67
           ++ME+D   S   D   P+FS+NVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSL
Sbjct: 2   ASMEVDSANSNTFDPDNPRFSVNVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSL 61

Query: 68  KFTHGRGKYTRKAITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQRIYLIGR 127
           KFTHGRGKYT++AIT+STV+EVR+LH+VLYTAERAWSHAMEKRQLPDGPN RQRIYLIGR
Sbjct: 62  KFTHGRGKYTKRAITQSTVSEVRYLHVVLYTAERAWSHAMEKRQLPDGPNPRQRIYLIGR 121

Query: 128 LRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVY 187
           LRKAVKWATLF+ LCA K D RTSLEAEAYASYM GNLLFEQD+NW+TAL NFK ARAVY
Sbjct: 122 LRKAVKWATLFAQLCASKGDSRTSLEAEAYASYMTGNLLFEQDRNWDTALLNFKRARAVY 181

Query: 188 EELGKYGDVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALDLFKSK 247
           EELGK GD+ENQVLCRERVEELEPSIRYCLHKIG+SN++ SELL IGEMEGPALDLFK+K
Sbjct: 182 EELGKVGDLENQVLCRERVEELEPSIRYCLHKIGKSNLQASELLHIGEMEGPALDLFKAK 241

Query: 248 LEAVMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEKK 307
           LEAVM+EARSQQA S+TEFHWLGHRFPISNAKTRV+ILKA+ELEKDL   +ADSLPAEK+
Sbjct: 242 LEAVMSEARSQQAVSMTEFHWLGHRFPISNAKTRVSILKARELEKDLQ-SSADSLPAEKR 300

Query: 308 LVIFDKIFTAYHEARGCIRSDLASAGNAENVKDDLFGLDKAVSAVLGQRTIERNQLLVSI 367
           L IFDKIF AYHEAR  IRSDL SAGNAE+VKDDL GLDKAVSAVLGQRTIERNQLLV I
Sbjct: 301 LSIFDKIFAAYHEARSSIRSDLVSAGNAESVKDDLSGLDKAVSAVLGQRTIERNQLLVKI 360

Query: 368 VKGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELK 427
            K KL ++ D+K  KVTKPEELVRLYDLLLQN ADLSDLVSSGR+R+ EEV FAEEC LK
Sbjct: 361 AKSKLVRRHDEKNEKVTKPEELVRLYDLLLQNIADLSDLVSSGRDRRQEEVTFAEECSLK 420

Query: 428 SLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSD 477
           SLAFR ERCFYLA+SYSLAGKR EAY LYC ARS  E+A++ F+    SD
Sbjct: 421 SLAFRGERCFYLAKSYSLAGKRAEAYVLYCHARSLIEDAIQKFRTANISD 470

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	485
TAIR|locus:2156181	605	AT5G61970 [Arabidopsis thalian	0.981	0.786	0.781	1.3e-196
UNIPROTKB|A6QQW3	623	SRP68 "Uncharacterized protein	0.913	0.711	0.349	7.4e-66
UNIPROTKB|F1PI42	618	SRP68 "Signal recognition part	0.913	0.716	0.346	4.1e-65
UNIPROTKB|Q00004	622	SRP68 "Signal recognition part	0.913	0.712	0.346	4.1e-65
UNIPROTKB|F1P0P4	602	SRP68 "Uncharacterized protein	0.888	0.715	0.347	6.7e-65
MGI|MGI:1917447	625	Srp68 "signal recognition part	0.927	0.72	0.346	1.4e-64
UNIPROTKB|Q9UHB9	627	SRP68 "Signal recognition part	0.952	0.736	0.340	2.3e-64
UNIPROTKB|F1RW08	624	SRP68 "Uncharacterized protein	0.954	0.741	0.336	4.2e-63
ZFIN|ZDB-GENE-040831-3	617	srp68 "signal recognition part	0.948	0.745	0.316	6.2e-62
UNIPROTKB|G3V1U4	589	SRP68 "Signal recognition part	0.771	0.634	0.344	2e-59

TAIR|locus:2156181 AT5G61970 [Arabidopsis thaliana (taxid:3702)]

 Score = 1904 (675.3 bits), Expect = 1.3e-196, P = 1.3e-196
 Identities = 372/476 (78%), Positives = 412/476 (86%)

Query:     3 KNSETSAMEIDDKKSINSDQIGPKFSINVLQLLKSAQMQHGLRHGDXXXXXXXXXXXXXX 62
             K SE SAMEIDD KS +SDQI P+FSINVLQL+KS+Q QHGLRHGD              
Sbjct:     4 KQSEISAMEIDDPKSESSDQILPRFSINVLQLMKSSQAQHGLRHGDYARYRRYCSARLRR 63

Query:    63 XXKSLKFTHGRGKYTRKAITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQRI 122
               KSLKFTHGRGKYTR+AI ESTVT+VRFLH+V Y AERAWSHAMEKRQLPDGPNARQRI
Sbjct:    64 LYKSLKFTHGRGKYTRRAILESTVTDVRFLHVVFYMAERAWSHAMEKRQLPDGPNARQRI 123

Query:   123 YLIGRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKS 182
             YL+GRLRKAVKWA+LFS+LC+IK D RTSLEAEAYASYMKG LLFEQDQNWET L  FK+
Sbjct:   124 YLVGRLRKAVKWASLFSSLCSIKTDSRTSLEAEAYASYMKGTLLFEQDQNWETGLACFKN 183

Query:   183 ARAVYEELGKYGDVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALD 242
             ARAVYEELGKYGD+ENQVLCRERVEELEPSIRYCLHKIG+SN++TSELLQIGEMEGPALD
Sbjct:   184 ARAVYEELGKYGDLENQVLCRERVEELEPSIRYCLHKIGKSNLQTSELLQIGEMEGPALD 243

Query:   243 LFKSKLEAVMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSL 302
             LFK+K+EA M EARSQQAASLTEF WLG+RFP+SN K+RV+ILKAQELEK+L    A+SL
Sbjct:   244 LFKAKIEAAMEEARSQQAASLTEFSWLGYRFPVSNPKSRVSILKAQELEKELQSPTAESL 303

Query:   303 PAEKKLVIFDKIFTAYHEARGCIRSDLASAGNAENVKDDLFGLDKAVSAVLGQRTIERNQ 362
             PAEKKL IFDK+FTAYH+AR  IRSDL SAGNAE+VKDDL GLDKAV AVLGQRTIERNQ
Sbjct:   304 PAEKKLTIFDKLFTAYHDARNTIRSDLVSAGNAESVKDDLNGLDKAVGAVLGQRTIERNQ 363

Query:   363 LLVSIVKGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAE 422
             LLV + K KL ++RDDK  KVT+PEELVRLYDLLLQN ADLSDL+SSGR+RKPEE+ F E
Sbjct:   364 LLVKVAKSKLNRKRDDKNDKVTRPEELVRLYDLLLQNVADLSDLISSGRDRKPEEIAFEE 423

Query:   423 ECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQ 478
             EC+  SLAFRAERCFYLA+SYSLAGKR EA+ALY RARS AE+AL  FQ +A  D+
Sbjct:   424 ECQRTSLAFRAERCFYLAKSYSLAGKRAEAFALYSRARSLAEDALNKFQSIAKKDE 479

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|A6QQW3 SRP68 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 670 (240.9 bits), Expect = 7.4e-66, P = 7.4e-66
 Identities = 163/466 (34%), Positives = 257/466 (55%)

Query:    22 QIGPKFSINVLQLLKSAQMQHGLRHGDXXXXXXXXXXXXXXXXKSLKFTHG-RGKYTRKA 80
             + G   S+ +LQ++K +Q QHGLRHGD                K+L F  G R K+T K 
Sbjct:    50 EFGDSLSLEILQIIKESQQQHGLRHGDFQRYRGYCSRRQRRLRKTLNFKMGNRHKFTGKK 109

Query:    81 ITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQRIYLIGRLRKAVKWATLFSN 140
             +TE  +T+ R+L LVL  AERAWS+AM+ +Q  +    R+R +L+ RLRKAVK A     
Sbjct:   110 VTEDLLTDNRYLLLVLMDAERAWSYAMQLKQEAN-TEPRKRFHLLSRLRKAVKHAEELER 168

Query:   141 LC-AIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELGKYGDVENQ 199
             LC + + D +T LEA+AY +Y+ G L FE  Q W+ A++ F   + +YE+L      E  
Sbjct:   169 LCESNRVDAKTKLEAQAYTAYLSGMLRFEH-QEWKAAIEAFNKCKTIYEKLASAFTEEQA 227

Query:   200 VLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALDLFKSKLEAVMAEARSQQ 259
             VL  +RVEE+ P+IRYC + IG+ +   +EL+Q+    G    L   KLEA++ + R++Q
Sbjct:   228 VLYNQRVEEISPNIRYCAYNIGDQSA-INELMQMRLRSGGTEGLLAEKLEALITQTRAKQ 286

Query:   260 AASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEKKLVIFDKIFTAYH 319
             AA+++E  W G   P+   K R+ +L   + E    +  A+S   +++L  F+ + +   
Sbjct:   287 AATMSEVEWRGRTVPVKIDKVRIFLLGLADNEAA--IAQAESEETKERL--FESMLSECR 342

Query:   320 EARGCIRSDLAS-------AGNAENVK-DDLFGLDKAVSAVLGQRTIERNQLLVS-IVKG 370
             +A   +R +L S       A + E+ K  +L  L   ++ +     I+RN+ +   + K 
Sbjct:   343 DAIQAVREELKSDQKQRDYALDVESGKVSNLQYLHSYLTYIKLSTAIKRNENMAKGLQKA 402

Query:   371 KLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLA 430
              L +Q +D + +  +P++L+RLYD++LQN  +L  L   G E   E+  F +E  LK+L 
Sbjct:   403 LLQQQPEDDSKRAPRPQDLIRLYDIILQNLVELLQL--PGLE---EDRAFQKEIGLKTLV 457

Query:   431 FRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANS 476
             ++A RCF++A+SY L  K  EA  LY R   +A+    D     NS
Sbjct:   458 YKAYRCFFIAQSYVLVKKWNEALVLYDRVLKYADEVNSDAGAFKNS 503

GO:0042493 "response to drug" evidence=IEA

GO:0030942 "endoplasmic reticulum signal peptide binding" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=IEA

GO:0005047 "signal recognition particle binding" evidence=IEA

UNIPROTKB|F1PI42 SRP68 "Signal recognition particle 68 kDa protein" [Canis lupus familiaris (taxid:9615)]

 Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
 Identities = 161/465 (34%), Positives = 255/465 (54%)

Query:    22 QIGPKFSINVLQLLKSAQMQHGLRHGDXXXXXXXXXXXXXXXXKSLKFTHG-RGKYTRKA 80
             + G   S+ +LQ++K +Q QHGLRHGD                K+L F  G R K+T K 
Sbjct:    46 EFGDSLSLEILQIIKESQQQHGLRHGDFQRYRGYCSRRQRRLRKTLNFKMGNRHKFTGKK 105

Query:    81 ITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQRIYLIGRLRKAVKWATLFSN 140
             +TE  +T+ R+L LVL  AERAWS+AM+ +Q  +    R+R +L+ RLRKAVK A     
Sbjct:   106 VTEDLLTDNRYLLLVLMDAERAWSYAMQLKQEAN-TEPRKRFHLLSRLRKAVKHAEELER 164

Query:   141 LC-AIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELGKYGDVENQ 199
             LC + + D +T LEA+AY +Y+ G L FE  Q W+ A++ F   + +YE+L      E  
Sbjct:   165 LCESNRVDAKTKLEAQAYTAYLSGMLRFEH-QEWKAAIEAFNKCKTIYEKLASAFTEEQA 223

Query:   200 VLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALDLFKSKLEAVMAEARSQQ 259
             VL  +RVEE+ P+IRYC + IG+ +   +EL+Q+    G    L   KLEA++ + R++Q
Sbjct:   224 VLYNQRVEEISPNIRYCAYNIGDQSA-INELMQMRLRSGGTEGLLAEKLEALITQTRAKQ 282

Query:   260 AASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEKKLVIFDKIFTAYH 319
             AA+++E  W G   P+   K R+ +L   + E    +  A+S   +++L  F+ + +   
Sbjct:   283 AATMSEVEWRGRTVPVKIDKVRIFLLGLADNEAA--IAQAESEETKERL--FESMLSECR 338

Query:   320 EARGCIRSDLASAG-------NAENVK-DDLFGLDKAVSAVLGQRTIERNQLLVSIVKGK 371
             +A   +R +L           + E+ K  +L  L   ++ +     I RN+ +   ++  
Sbjct:   339 DAIQAVREELKPDQKQRDYTLDGESGKVSNLQYLHSYLTYIKLSTAIRRNENMAKGLQKA 398

Query:   372 LTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAF 431
             L +Q +D++ +  +P++L+RLYD++LQN  +L  L   G E   E+  F +E  LK+L F
Sbjct:   399 LQQQPEDESKRSPRPQDLIRLYDIILQNLVELLQL--PGLE---EDRAFQKEIGLKTLVF 453

Query:   432 RAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANS 476
             +A RCF++A+SY L  K +EA  LY R   +A     D     NS
Sbjct:   454 KAYRCFFIAQSYVLVKKWSEALVLYDRVLKYANEVNSDAGAFRNS 498

GO:0030942 "endoplasmic reticulum signal peptide binding" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=IEA

GO:0005047 "signal recognition particle binding" evidence=IEA

UNIPROTKB|Q00004 SRP68 "Signal recognition particle 68 kDa protein" [Canis lupus familiaris (taxid:9615)]

 Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
 Identities = 161/465 (34%), Positives = 255/465 (54%)

Query:    22 QIGPKFSINVLQLLKSAQMQHGLRHGDXXXXXXXXXXXXXXXXKSLKFTHG-RGKYTRKA 80
             + G   S+ +LQ++K +Q QHGLRHGD                K+L F  G R K+T K 
Sbjct:    50 EFGDSLSLEILQIIKESQQQHGLRHGDFQRYRGYCSRRQRRLRKTLNFKMGNRHKFTGKK 109

Query:    81 ITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQRIYLIGRLRKAVKWATLFSN 140
             +TE  +T+ R+L LVL  AERAWS+AM+ +Q  +    R+R +L+ RLRKAVK A     
Sbjct:   110 VTEDLLTDNRYLLLVLMDAERAWSYAMQLKQEAN-TEPRKRFHLLSRLRKAVKHAEELER 168

Query:   141 LC-AIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELGKYGDVENQ 199
             LC + + D +T LEA+AY +Y+ G L FE  Q W+ A++ F   + +YE+L      E  
Sbjct:   169 LCESNRVDAKTKLEAQAYTAYLSGMLRFEH-QEWKAAIEAFNKCKTIYEKLASAFTEEQA 227

Query:   200 VLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALDLFKSKLEAVMAEARSQQ 259
             VL  +RVEE+ P+IRYC + IG+ +   +EL+Q+    G    L   KLEA++ + R++Q
Sbjct:   228 VLYNQRVEEISPNIRYCAYNIGDQSA-INELMQMRLRSGGTEGLLAEKLEALITQTRAKQ 286

Query:   260 AASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEKKLVIFDKIFTAYH 319
             AA+++E  W G   P+   K R+ +L   + E    +  A+S   +++L  F+ + +   
Sbjct:   287 AATMSEVEWRGRTVPVKIDKVRIFLLGLADNEAA--IAQAESEETKERL--FESMLSECR 342

Query:   320 EARGCIRSDLASAG-------NAENVK-DDLFGLDKAVSAVLGQRTIERNQLLVSIVKGK 371
             +A   +R +L           + E+ K  +L  L   ++ +     I RN+ +   ++  
Sbjct:   343 DAIQAVREELKPDQKQRDYTLDGESGKVSNLQYLHSYLTYIKLSTAIRRNENMAKGLQKA 402

Query:   372 LTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAF 431
             L +Q +D++ +  +P++L+RLYD++LQN  +L  L   G E   E+  F +E  LK+L F
Sbjct:   403 LQQQPEDESKRSPRPQDLIRLYDIILQNLVELLQL--PGLE---EDRAFQKEIGLKTLVF 457

Query:   432 RAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANS 476
             +A RCF++A+SY L  K +EA  LY R   +A     D     NS
Sbjct:   458 KAYRCFFIAQSYVLVKKWSEALVLYDRVLKYANEVNSDAGAFRNS 502

GO:0005829 "cytosol" evidence=TAS

GO:0005730 "nucleolus" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=IEA

GO:0030942 "endoplasmic reticulum signal peptide binding" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0005047 "signal recognition particle binding" evidence=IEA

UNIPROTKB|F1P0P4 SRP68 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 661 (237.7 bits), Expect = 6.7e-65, P = 6.7e-65
 Identities = 159/457 (34%), Positives = 257/457 (56%)

Query:    20 SDQIGPKFSINVLQLLKSAQMQHGLRHGDXXXXXXXXXXXXXXXXKSLKFTHG-RGKYTR 78
             +D +     + +LQ++K +Q QHGLRHGD                K+L F  G R K+T 
Sbjct:    26 ADGLSDSLGLEILQIVKESQQQHGLRHGDFQRYRGYCSRRLRRLRKTLNFKMGNRHKFTG 85

Query:    79 KAITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQRIYLIGRLRKAVKWATLF 138
             K +TE  +++ R+L L+L  AERAWS+AM+ +Q  +    R+R +L+ RLRKAVK A   
Sbjct:    86 KKVTEEILSDNRYLLLILMDAERAWSYAMQLKQEAN-TEPRKRFHLLSRLRKAVKHAEEL 144

Query:   139 SNLC-AIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELGKYGDVE 197
               LC + + D +T LEA+AY +Y+ G L FE  Q W+ A++ F   + +YE+L      E
Sbjct:   145 ERLCESNRVDAKTKLEAQAYMAYLTGMLRFEH-QEWKAAMEAFNKCKTIYEKLANAFTEE 203

Query:   198 NQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALDLFKSKLEAVMAEARS 257
               VL  +RVEE+ P+IRYC + IG+ +   +EL+Q+    G    L   KLEA++ + R+
Sbjct:   204 QAVLYNQRVEEISPNIRYCAYNIGDQSAM-NELMQMRLRSGGTEGLLAEKLEALITQTRA 262

Query:   258 QQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEKKLVIFDKIFTA 317
             +QAA+++E  W G   P+   K R+ +L   + E  + V+A +    E+   +F+ + + 
Sbjct:   263 KQAATMSEVEWRGRTVPVKIDKVRIFLLGLADNEAAI-VQAENEETRER---LFESLLSE 318

Query:   318 YHEARGCIRSDL---------ASAGNAENVKDDLFGLDKAVSAVLGQRTIERNQLLV-SI 367
               +A   +R DL         +  G++  V +  + L   ++ +     I+RN+ +  S+
Sbjct:   319 CRDAIQAVREDLKPDQKQREHSLEGDSGKVSNIQY-LHSYLTYIKLSTAIKRNESMAKSL 377

Query:   368 VKGKLTKQRDDKTGKVT-KPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECEL 426
              K  L +QR ++ GK T +P++L+RLYD++LQN  +L+ L   G E   E+  F +E  L
Sbjct:   378 QKALLQQQRSEEDGKRTPRPQDLIRLYDIILQNLVELTQL--PGLE---EDKSFQKEIGL 432

Query:   427 KSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHA 463
             K+L ++A RCF++A+SY L  K +EA  LY R   +A
Sbjct:   433 KTLVYKAYRCFFIAQSYVLVKKWSEALVLYERVLKYA 469

GO:0005047 "signal recognition particle binding" evidence=IEA

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=IEA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0030942 "endoplasmic reticulum signal peptide binding" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

MGI|MGI:1917447 Srp68 "signal recognition particle 68" [Mus musculus (taxid:10090)]

 Score = 658 (236.7 bits), Expect = 1.4e-64, P = 1.4e-64
 Identities = 164/473 (34%), Positives = 257/473 (54%)

Query:     2 AKNSETSAMEIDDKKSINSDQIGPKFSINVLQLLKSAQMQHGLRHGDXXXXXXXXXXXXX 61
             A   E    E     S  + + G   S+ +LQ++K +Q QHGLRHGD             
Sbjct:    32 AGGDENKENERPSAGSKANKEFGDSLSLEILQIIKESQQQHGLRHGDFQRYRGYCSRRQR 91

Query:    62 XXXKSLKFTHG-RGKYTRKAITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQ 120
                K+L F  G R K+T K +TE  +T+ R+L LVL  AERAWS+AM+ +Q  +    R+
Sbjct:    92 RLRKTLNFKMGNRHKFTGKKVTEELLTDNRYLLLVLMDAERAWSYAMQLKQEAN-TEPRK 150

Query:   121 RIYLIGRLRKAVKWATLFSNLC-AIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKN 179
             R +L+ RLRKAVK A     LC + + D +T LEA+AY +Y+ G L FE  Q W++A++ 
Sbjct:   151 RFHLLSRLRKAVKHAEELERLCESNRVDAKTKLEAQAYTAYLSGMLRFEH-QEWKSAIEA 209

Query:   180 FKSARAVYEELGKYGDVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGP 239
             F   + +YE+L      E  VL  +RVEE+ P+IRYC + IG+ +   +EL+Q+    G 
Sbjct:   210 FNKCKTIYEKLASAFTEEQAVLYNQRVEEISPNIRYCAYNIGDQSA-INELMQMRLRSGG 268

Query:   240 ALDLFKSKLEAVMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAA 299
                L   KLEA++ + R++QAA+++E  W G   P+   K R+ +L   + E  + V+A 
Sbjct:   269 TEGLLAEKLEALITQTRAKQAATMSEVEWRGRTVPVKIDKVRIFLLGLADNEAAI-VQAE 327

Query:   300 DSLPAEKKLVIFDKIFTAYHEARGCIRSDLAS-------AGNAENVK-DDLFGLDKAVSA 351
                  E K  +F+ + +   +A   +R +L         A + E+ K  +L  L   ++ 
Sbjct:   328 SE---ETKERLFESMLSECRDALQAVREELKPDQKQRDYALDGESGKVSNLQYLHSYLTY 384

Query:   352 VLGQRTIERNQLLVS-IVKGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSG 410
             +     I RN+ +   + +  L +Q +D + +  +P++L+RLYD++LQN  +L  L   G
Sbjct:   385 IKLSTAIRRNENMAKGLHRALLQQQPEDDSKRSPRPQDLIRLYDIILQNLVELLQL--PG 442

Query:   411 RERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHA 463
              E   E+  F +E  LK+L F+A RCF++A+SY L  K +EA  LY R   +A
Sbjct:   443 LE---EDRTFQKEISLKTLVFKAYRCFFIAQSYVLVKKWSEALVLYDRVLKYA 492

GO:0003723 "RNA binding" evidence=IEA

GO:0005047 "signal recognition particle binding" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005730 "nucleolus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=ISO

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0030942 "endoplasmic reticulum signal peptide binding" evidence=IEA

GO:0042493 "response to drug" evidence=ISO

UNIPROTKB|Q9UHB9 SRP68 "Signal recognition particle 68 kDa protein" [Homo sapiens (taxid:9606)]

 Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
 Identities = 166/487 (34%), Positives = 257/487 (52%)

Query:     2 AKNSETSAMEIDDKKSINSDQIGPKFSINVLQLLKSAQMQHGLRHGDXXXXXXXXXXXXX 61
             A   E    E     S  + + G   S+ +LQ++K +Q QHGLRHGD             
Sbjct:    33 AGGEENKENERPSAGSKANKEFGDSLSLEILQIIKESQQQHGLRHGDFQRYRGYCSRRQR 92

Query:    62 XXXKSLKFTHG-RGKYTRKAITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQ 120
                K+L F  G R K+T K +TE  +T+ R+L LVL  AERAWS+AM+ +Q  +    R+
Sbjct:    93 RLRKTLNFKMGNRHKFTGKKVTEELLTDNRYLLLVLMDAERAWSYAMQLKQEAN-TEPRK 151

Query:   121 RIYLIGRLRKAVKWATLFSNLC-AIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKN 179
             R +L+ RLRKAVK A     LC + + D +T LEA+AY +Y+ G L FE  Q W+ A++ 
Sbjct:   152 RFHLLSRLRKAVKHAEELERLCESNRVDAKTKLEAQAYTAYLSGMLRFEH-QEWKAAIEA 210

Query:   180 FKSARAVYEELGKYGDVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGP 239
             F   + +YE+L      E  VL  +RVEE+ P+IRYC + IG+ +   +EL+Q+    G 
Sbjct:   211 FNKCKTIYEKLASAFTEEQAVLYNQRVEEISPNIRYCAYNIGDQSA-INELMQMRLRSGG 269

Query:   240 ALDLFKSKLEAVMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAA 299
                L   KLEA++ + R++QAA+++E  W G   P+   K R+ +L   + E  + V+A 
Sbjct:   270 TEGLLAEKLEALITQTRAKQAATMSEVEWRGRTVPVKIDKVRIFLLGLADNEAAI-VQAE 328

Query:   300 DSLPAEKKLVIFDKIFTAYHEARGCIRSDLAS---------AGNAENVKDDLFGLDKAVS 350
                  E K  +F+ + +   +A   +R +L            G    V + L  L   ++
Sbjct:   329 SE---ETKERLFESMLSECRDAIQVVREELKPDQKQRDYILEGEPGKVSN-LQYLHSYLT 384

Query:   351 AVLGQRTIERNQLLVS-IVKGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSS 409
              +     I+RN+ +   + +  L +Q +D + +  +P++L+RLYD++LQN  +L  L   
Sbjct:   385 YIKLSTAIKRNENMAKGLQRALLQQQPEDDSKRSPRPQDLIRLYDIILQNLVELLQL--P 442

Query:   410 GRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKD 469
             G E   E+  F +E  LK+L F+A RCF++A+SY L  K +EA  LY R   +A     D
Sbjct:   443 GLE---EDKAFQKEIGLKTLVFKAYRCFFIAQSYVLVKKWSEALVLYDRVLKYANEVNSD 499

Query:   470 FQRMANS 476
                  NS
Sbjct:   500 AGAFKNS 506

GO:0008312 "7S RNA binding" evidence=IEA

GO:0030942 "endoplasmic reticulum signal peptide binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=IDA

GO:0042493 "response to drug" evidence=IDA

GO:0005047 "signal recognition particle binding" evidence=IPI

GO:0005783 "endoplasmic reticulum" evidence=TAS

GO:0005840 "ribosome" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006412 "translation" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F1RW08 SRP68 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
 Identities = 164/488 (33%), Positives = 262/488 (53%)

Query:     2 AKNSETSAMEIDDKKSINSDQIGPKFSINVLQLLKSAQMQHGLRHGDXXXXXXXXXXXXX 61
             A   E    E     S  + + G   S+ +LQ++K +Q QHGLRHGD             
Sbjct:    29 AGGEENKENERPSAGSKANKEFGDSLSLEILQIIKESQQQHGLRHGDFQRYRGYCSRRQR 88

Query:    62 XXXKSLKFTHG-RGKYTRKAITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQ 120
                K+L F  G R K+T K +TE  +T+ R+L LVL  AERAWS+AM+ +Q  +    R+
Sbjct:    89 RLRKTLNFKMGNRHKFTGKKVTEDLLTDNRYLLLVLMDAERAWSYAMQLKQEAN-TEPRK 147

Query:   121 RIYLIGRLRKAVKWATLFSNLC-AIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKN 179
             R +L+ RLRKAVK A     LC + + D +T LEA+AY +Y+ G L FE  Q W+ A++ 
Sbjct:   148 RFHLLSRLRKAVKHAEELERLCESNRVDAKTKLEAQAYTAYLSGMLRFEH-QEWKAAIEA 206

Query:   180 FKSARAVYEELGKYGDVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGP 239
             F   + +YE+L      E  VL  +RVEE+ P+IRYC + IG+ +   +EL+Q+    G 
Sbjct:   207 FNKCKTIYEKLASAFTEEQAVLYNQRVEEISPNIRYCAYNIGDQSA-INELMQMRLRSGG 265

Query:   240 ALDLFKSKLEAVMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAA 299
                L   KLEA++ + R++QAA+++E  W G   P+   + R+ +L   + E    +  A
Sbjct:   266 TEGLLAEKLEALITQTRAKQAATMSEVEWRGRAVPVKVDRVRIFLLGLADNEAA--IAQA 323

Query:   300 DSLPAEKKLVIFDKIFTAYHEARGCIRSDLASAG-------NAENVK-DDLFGLDKAVSA 351
             +S   +++L  F+ + +   +A   +R +L           + E+ K  +L  L   ++ 
Sbjct:   324 ESEETKERL--FESMLSECRDAIQAVREELKPDQKQRDYPLDGESGKVSNLQYLHSYLTY 381

Query:   352 VLGQRTIERNQLLVSIVKGKLTKQRDDKTGKVT-KPEELVRLYDLLLQNTADLSDLVSSG 410
             +     I+RN+ +   ++  L +Q+ +  GK + +P++L+RLYD++LQN  +L  L   G
Sbjct:   382 IKLSTAIKRNENMARGLQKALLQQQPEDDGKRSPRPQDLIRLYDIILQNLVELLQL--PG 439

Query:   411 RERKPEEVKFAEECELKSLAFRAE--RCFYLARSYSLAGKRTEAYALYCRARSHAENALK 468
              E   E+  F +E  LK+L ++A   RCF++A+SY L  K +EA  LY R   +A+    
Sbjct:   440 LE---EDRAFQKEIGLKTLVYKAYSVRCFFIAQSYVLVKKWSEALVLYDRVLKYADEVNS 496

Query:   469 DFQRMANS 476
             D     NS
Sbjct:   497 DAGAFKNS 504

GO:0042493 "response to drug" evidence=IEA

GO:0030942 "endoplasmic reticulum signal peptide binding" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=IEA

GO:0005047 "signal recognition particle binding" evidence=IEA

ZFIN|ZDB-GENE-040831-3 srp68 "signal recognition particle 68" [Danio rerio (taxid:7955)]

 Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
 Identities = 153/483 (31%), Positives = 262/483 (54%)

Query:     5 SETSAMEIDDKKSINSDQIGPKFSINVLQLLKSAQMQHGLRHGDXXXXXXXXXXXXXXXX 64
             +E + +++   +    + I     + +LQ++K +Q QHGLRHGD                
Sbjct:    27 AEQNGVKMPSTEENKENSIDQSIGLEILQIIKDSQQQHGLRHGDYQRYRGYCSRRLRRLR 86

Query:    65 KSLKFTHG-RGKYTRKAITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQRIY 123
             K+L F  G R K+T K +T   +++ R+L LVL  AERAWS+AM+ +Q  +    R+R +
Sbjct:    87 KALGFKMGNRHKFTGKKVTVEMLSDNRYLLLVLMEAERAWSYAMQLKQEAN-TEPRKRFH 145

Query:   124 LIGRLRKAVKWATLFSNLC-AIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKS 182
             L+GRLRKA K       LC +   D +T LEA+AY +Y+ G + FE  Q W++A++ F +
Sbjct:   146 LLGRLRKAAKHGDQLEKLCESPNVDAKTKLEAQAYTAYLTGMVQFEL-QEWKSAMEAFNN 204

Query:   183 ARAVYEELGKYGDVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALD 242
              + +YE+L      E  VL  +RVEE+ P+IRYC + IG+ N   ++L+Q+    G    
Sbjct:   205 CKTIYEKLASAFTEEQAVLYHQRVEEISPNIRYCAYNIGDQNA-INDLMQMRLSAGGGGG 263

Query:   243 LFKSKLEAVMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSL 302
             +   KLE+++ + R++QAA ++E  W G   PI   K R+ +L   + E    +  AD+ 
Sbjct:   264 MMAEKLESLITQTRAKQAAVMSEVEWRGRTVPIKIDKARIFLLGLADNEAA--ITQADN- 320

Query:   303 PAEKKLVIFDKIFTAYHEA----RGCIRSDLASAGNAENVKD-----DLFGLDKAVSAVL 353
               E K  +++ +     +     R  +R+D+     A +V +     +L  L   ++ + 
Sbjct:   321 -EETKEHLYESLLAECRDTIQAVREELRTDVKQRERATDVAESSKVSNLQYLHSYLTYIK 379

Query:   354 GQRTIERNQLLVSIVKGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRER 413
                 ++RN+ +   ++ KL + + D+  +  +P++L+RLYD++LQ+ A+LS L   G E 
Sbjct:   380 LWTVVKRNESMAHSLQTKLKEPQTDENKRGPRPQDLIRLYDIILQSLAELSSL--QGLE- 436

Query:   414 KPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRM 473
               E+  F +E  LK+L ++A RCFY+A+SY L  K +EA  LY R   + +      + +
Sbjct:   437 --EDHTFQKELSLKTLVYKAYRCFYIAQSYVLVKKWSEALVLYERVLKYTKEVQSKAKSL 494

Query:   474 ANS 476
             +N+
Sbjct:   495 SNN 497

GO:0005047 "signal recognition particle binding" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=IEA

GO:0030942 "endoplasmic reticulum signal peptide binding" evidence=IEA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

UNIPROTKB|G3V1U4 SRP68 "Signal recognition particle 68 kDa protein" [Homo sapiens (taxid:9606)]

 Score = 538 (194.4 bits), Expect = 2.0e-59, Sum P(2) = 2.0e-59
 Identities = 137/398 (34%), Positives = 216/398 (54%)

Query:    90 RFLHLVLYTAERAWSHAMEKRQLPDGPNARQRIYLIGRLRKAVKWATLFSNLC-AIKADP 148
             R+L LVL  AERAWS+AM+ +Q  +    R+R +L+ RLRKAVK A     LC + + D 
Sbjct:    84 RYLLLVLMDAERAWSYAMQLKQEAN-TEPRKRFHLLSRLRKAVKHAEELERLCESNRVDA 142

Query:   149 RTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELGKYGDVENQVLCRERVEE 208
             +T LEA+AY +Y+ G L FE  Q W+ A++ F   + +YE+L      E  VL  +RVEE
Sbjct:   143 KTKLEAQAYTAYLSGMLRFEH-QEWKAAIEAFNKCKTIYEKLASAFTEEQAVLYNQRVEE 201

Query:   209 LEPSIRYCLHKIGESNVKTSELLQIGEMEGPALDLFKSKLEAVMAEARSQQAASLTEFHW 268
             + P+IRYC + IG+ +   +EL+Q+    G    L   KLEA++ + R++QAA+++E  W
Sbjct:   202 ISPNIRYCAYNIGDQSA-INELMQMRLRSGGTEGLLAEKLEALITQTRAKQAATMSEVEW 260

Query:   269 LGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEKKLVIFDKIFTAYHEARGCIRSD 328
              G   P+   K R+ +L   + E  + V+A      E K  +F+ + +   +A   +R +
Sbjct:   261 RGRTVPVKIDKVRIFLLGLADNEAAI-VQAESE---ETKERLFESMLSECRDAIQVVREE 316

Query:   329 LAS---------AGNAENVKDDLFGLDKAVSAVLGQRTIERNQLLVS-IVKGKLTKQRDD 378
             L            G    V + L  L   ++ +     I+RN+ +   + +  L +Q +D
Sbjct:   317 LKPDQKQRDYILEGEPGKVSN-LQYLHSYLTYIKLSTAIKRNENMAKGLQRALLQQQPED 375

Query:   379 KTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCFY 438
              + +  +P++L+RLYD++LQN  +L  L   G E   E+  F +E  LK+L F+A RCF+
Sbjct:   376 DSKRSPRPQDLIRLYDIILQNLVELLQL--PGLE---EDKAFQKEIGLKTLVFKAYRCFF 430

Query:   439 LARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANS 476
             +A+SY L  K +EA  LY R   +A     D     NS
Sbjct:   431 IAQSYVLVKKWSEALVLYDRVLKYANEVNSDAGAFKNS 468

GO:0005047 "signal recognition particle binding" evidence=IEA

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=IEA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0030942 "endoplasmic reticulum signal peptide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_XV0330 hypothetical protein (602 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	485
KOG2460	593	consensus Signal recognition particle, subunit Srp	100.0
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	89.61
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	89.14
cd09034	345	BRO1_Alix_like Protein-interacting Bro1-like domai	88.24
cd09242	348	BRO1_ScBro1_like Protein-interacting, N-terminal,	86.76
PF03097	377	BRO1: BRO1-like domain; InterPro: IPR004328 The BR	86.44
cd09239	361	BRO1_HD-PTP_like Protein-interacting, N-terminal,	86.26
cd09247	346	BRO1_Alix_like_2 Protein-interacting Bro1-like dom	85.93
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	85.91
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	85.03
cd09243	353	BRO1_Brox_like Protein-interacting Bro1-like domai	80.68

>KOG2460 consensus Signal recognition particle, subunit Srp68 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.9e-92  Score=719.94  Aligned_cols=442  Identities=33%  Similarity=0.519  Sum_probs=394.5

Q ss_pred             ccchhHHHHHHHHHHhcCcCcchhHHHHHHHHHHHHHHHhhhCCccC-CCCcccccCCccccc--chhhHHHHHHHHHHH
Q 011474           26 KFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSLKFTHG-RGKYTRKAITESTVT--EVRFLHLVLYTAERA  102 (485)
Q Consensus        26 ~~sl~vl~~i~~~q~qhGLrh~DY~RYr~ycsrRL~rLRk~L~~t~g-~~Ky~~k~it~e~~~--d~r~l~llLl~AERa  102 (485)
                      --++.+|++++++|+|||||||||+|||+||++|++|+||.++|+.| .+||..+.||-...+  |.+||.+|++++||+
T Consensus        17 ~~t~~iL~~~kd~qqqHgLrhGd~qryR~yC~~~l~r~rKal~f~~gn~~k~~s~~v~~~~~~~~~~q~l~~~~~e~era   96 (593)
T KOG2460|consen   17 CRTLEILQTIKDAQQQHGLRHGDFQRYRGYCSRRLRRLRKALKFKNGNYGKFKSKDVTNKLKTLHDIQFLILPLAEAERA   96 (593)
T ss_pred             CchHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccccccchhhhhhhhhhhHhhhhhhhhhhhhhhhHHHH
Confidence            34899999999999999999999999999999999999999999988 788888877755554  999999999999999


Q ss_pred             HHHHHH-hccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhh--cCChhhHHHHHHHHHHHHHHHHhhccccHHHHHHH
Q 011474          103 WSHAME-KRQLPDGPNARQRIYLIGRLRKAVKWATLFSNLCAI--KADPRTSLEAEAYASYMKGNLLFEQDQNWETALKN  179 (485)
Q Consensus       103 WAyame-lk~~~~~~~~r~R~h~~~RLkKA~~~A~~L~~l~~~--~~d~~t~lEa~aY~~~i~G~~~~E~~~~W~~Al~~  179 (485)
                      |||||. .+| +.++.||+|+|+++||||||+||.+|+++|++  +.|++|+|||+||++||+|.+.||++ +|+.|.+.
T Consensus        97 ~Aeam~~~~Q-e~n~e~rkrfhll~rLrkA~~~A~eL~~~~q~~e~~Da~tkLEA~Ayaa~m~G~lnfE~r-~Wk~a~ea  174 (593)
T KOG2460|consen   97 YAEAMQLAKQ-EGNTESRKRFHLLNRLRKAVKHADELVNLTQNEERFDARTKLEAQAYAAYMEGMLNFERR-KWKDAAEA  174 (593)
T ss_pred             HHHHHHHHHH-hcCcchHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHhhhhhhHH-hHHhHHHH
Confidence            999999 777 67788999999999999999999999999986  47999999999999999999999999 99999999


Q ss_pred             HHHHHHHHHHHhcCCc-hhhHHHHHHHHHhhhhhHhhhhhhcCCCCC--CchHHHhhhhccCCchhHHHHHHHHHHH-HH
Q 011474          180 FKSARAVYEELGKYGD-VENQVLCRERVEELEPSIRYCLHKIGESNV--KTSELLQIGEMEGPALDLFKSKLEAVMA-EA  255 (485)
Q Consensus       180 ~~~ar~iy~~La~~~~-~~~~~l~~~~v~~i~p~lRycay~l~~~~~--~~~~l~~~~~~~~~~~~~L~~kl~~~~~-e~  255 (485)
                      |+.|+.+|+.|+.+.+ .+++.+|..+|++|+|+|||||||++.+..  ...++|+++.+.+.+.-.+...++.++. .+
T Consensus       175 ~~~~klvye~L~~a~~~e~~~~v~~~~vneiqpnLRycA~Ni~~~~~~~~i~Elmq~r~~~dee~~~~~~svd~lis~~t  254 (593)
T KOG2460|consen  175 FNNAKLVYEKLAHAKNLELEESVYDNRVNEIQPNLRYCAYNIIGPESNGFIDELMQSREQKDEELVKLLESVDFLISIQT  254 (593)
T ss_pred             HHHHHHHHHHHHhhcCchhHHHHHHHHHHhcChhHHHHhhhccCccccchHHHHHHhhccCCchhhhhhhccchhhhcch
Confidence            9999999999999977 666999999999999999999999975554  3677888765444333335566677777 44


Q ss_pred             HHHhhccccEEEEcccccccCCHHHHHHHHHHHHHHHHHhHhhcCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 011474          256 RSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEKKLVIFDKIFTAYHEARGCIRSDLASAGNA  335 (485)
Q Consensus       256 ~~~~~~~~~~I~Wrg~~~~i~~~~v~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~yd~~l~~~~dA~~~~r~~l~~~~~~  335 (485)
                      .+++.+.+++|+|||++|+|.+++|+++|..+++++.+|.+++    ..+.+++.++++++.+.||++.+++++.-....
T Consensus       255 ~tes~~~~t~IeWRg~kvkV~~~kV~~fL~~~~d~~~~l~q~~----t~~~K~~llEkala~~edaI~~v~D~~~~d~~~  330 (593)
T KOG2460|consen  255 STESSATTTTIEWRGRKVKVIDEKVRQFLLQGLDIEPALAQIT----TYDQKLSLLEKALARCEDAIQNVRDEIKIDEKQ  330 (593)
T ss_pred             hhhhhcceeEEEecCcccccccHHHHHHHHHHHhhcHHhccCC----CHhHHHHHHHHHHHHHHHHHHHHhhhcccchHh
Confidence            4566678999999999999999999999999999998887753    468999999999999999999999998644332


Q ss_pred             cCchhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHhhhccccccccCCCCChhhHHHHHHHHHHHHHHHhcccCCCCCCCh
Q 011474          336 ENVKDDLFGLDKAVSAVLGQRTIERNQLLVSIVKGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKP  415 (485)
Q Consensus       336 ~~~~~~l~~l~~yl~~~~l~~tIeRnl~li~~l~~~~~~~~~~~~~k~~k~~eivRLyd~ilq~l~ei~eLpg~~~~~v~  415 (485)
                      .+...+.+++++|+.|+++.+||.||..++..++..|.....+.++|+ +|+|+.||||+|+||++||+||||     ++
T Consensus       331 ~~~t~~~q~i~aYL~Y~~l~~tisR~~~~~~n~~~~~ls~~~~~~~k~-rpqdl~RLYd~iiknl~e~~elPG-----~~  404 (593)
T KOG2460|consen  331 RNSTLNGQIILAYLKYNKLLTTISRNEDAFTNLWNQWLSQQTSDPKKL-RPQDLERLYDSIIKNLSEIMELPG-----LE  404 (593)
T ss_pred             hhhhhcchHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHhCccccccc-CHHHHHHHHHHHHHHHHHHHhCCC-----cc
Confidence            222345678999999999999999999999999999887655566666 999999999999999999999999     78


Q ss_pred             hhHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhccCCCcc
Q 011474          416 EEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQV  479 (485)
Q Consensus       416 ~d~~l~~~l~a~~~~~~A~Rc~~lA~~y~~~~K~~EAlaL~~ra~~~~~~a~~~~~~~~~~~~~  479 (485)
                      +|..|..+++++..||+|+||||||.+|+..+||+||+|||+||.++++++.+.++.+++.+.+
T Consensus       405 ~D~~l~sqle~~~~~fkafRC~~iA~sY~a~~K~~EAlALy~Ra~sylqe~~~~l~s~~e~l~~  468 (593)
T KOG2460|consen  405 SDKELQSQLELKKLYFKAFRCFYIAVSYQAKKKYSEALALYVRAYSYLQEVNSELESFKESLLP  468 (593)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhcccc
Confidence            9999999999999999999999999999999999999999999999999999999999888774

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=89.61  E-value=0.84  Score=30.86  Aligned_cols=27  Identities=30%  Similarity=0.309  Sum_probs=22.9

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHHH
Q 011474          437 FYLARSYSLAGKRTEAYALYCRARSHA  463 (485)
Q Consensus       437 ~~lA~~y~~~~K~~EAlaL~~ra~~~~  463 (485)
                      ..||.+|...|+|.+|+.+|.+++...
T Consensus         3 ~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    3 NNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            469999999999999999999988544

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=89.14  E-value=0.77  Score=29.85  Aligned_cols=27  Identities=26%  Similarity=0.448  Sum_probs=23.7

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHH
Q 011474          436 CFYLARSYSLAGKRTEAYALYCRARSH  462 (485)
Q Consensus       436 c~~lA~~y~~~~K~~EAlaL~~ra~~~  462 (485)
                      +|.+|.+|...|+|.+|+..|.++...
T Consensus         4 ~~~lg~~~~~~~~~~~A~~~~~~al~l   30 (34)
T PF07719_consen    4 WYYLGQAYYQLGNYEEAIEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            577999999999999999999999864

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains

Probab=88.24  E-value=3  Score=42.97  Aligned_cols=80  Identities=19%  Similarity=0.084  Sum_probs=63.5

Q ss_pred             hhHHHHHHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 011474          387 EELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENA  466 (485)
Q Consensus       387 ~eivRLyd~ilq~l~ei~eLpg~~~~~v~~d~~l~~~l~a~~~~~~A~Rc~~lA~~y~~~~K~~EAlaL~~ra~~~~~~a  466 (485)
                      .+...+|+...+.+........     ..-+.++..-+..+..+|+|.=+|++|..+...+++.||++.+..|...++.+
T Consensus       210 ~~~~~~y~~A~~~l~~~~~~~~-----~~~~~~w~~~v~~K~~~~~a~a~~~~a~~~~e~~~~G~aia~L~~A~~~~~~~  284 (345)
T cd09034         210 CEAAKYYEEALKCLSGVDLETI-----KNIPKKWLLFLKWKKCIFKALAYYYHGLKLDEANKIGEAIARLQAALELLKES  284 (345)
T ss_pred             HHHHHHHHHHHHHHhcCCchhh-----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHH
Confidence            3466777777777665433200     01346888899999999999999999999999999999999999999999998


Q ss_pred             HHHHH
Q 011474          467 LKDFQ  471 (485)
Q Consensus       467 ~~~~~  471 (485)
                      ....+
T Consensus       285 ~~~~~  289 (345)
T cd09034         285 ERLCK  289 (345)
T ss_pred             HHHHH
Confidence            87644

This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to

>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins

Probab=86.76  E-value=4.7  Score=41.91  Aligned_cols=78  Identities=21%  Similarity=0.238  Sum_probs=61.3

Q ss_pred             hHHHHHHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Q 011474          388 ELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENAL  467 (485)
Q Consensus       388 eivRLyd~ilq~l~ei~eLpg~~~~~v~~d~~l~~~l~a~~~~~~A~Rc~~lA~~y~~~~K~~EAlaL~~ra~~~~~~a~  467 (485)
                      ++..+|....+.+....   +...  .+-+..+..-+..+..+|+|.=+||.|......+||.||+|-+..|...++++.
T Consensus       204 ~~~~~Y~~a~~~l~~~~---~~~~--~~~~~~W~~~~~~K~~~f~A~A~y~~a~~~~~~~k~GeaIa~L~~A~~~l~~a~  278 (348)
T cd09242         204 ATANLYESCVEFLKEIQ---EKGI--SYGDPKWISLVQCKAHYYKSLAAYYHALALEAAGKYGEAIAYLTQAESILKEAN  278 (348)
T ss_pred             HHHHHHHHHHHHHhccc---cccc--cccCHHHHHHHHHHHHHHHHHHHHHHHHHhHHhccHHHHHHHHHHHHHHHHHHH
Confidence            45667777766665432   2110  124568888899999999999999999999999999999999999999999888


Q ss_pred             HHH
Q 011474          468 KDF  470 (485)
Q Consensus       468 ~~~  470 (485)
                      ...
T Consensus       279 ~~~  281 (348)
T cd09242         279 PQK  281 (348)
T ss_pred             HHH
Confidence            754

This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the

>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome

Probab=86.44  E-value=2.8  Score=43.76  Aligned_cols=55  Identities=25%  Similarity=0.129  Sum_probs=49.9

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Q 011474          417 EVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQ  471 (485)
Q Consensus       417 d~~l~~~l~a~~~~~~A~Rc~~lA~~y~~~~K~~EAlaL~~ra~~~~~~a~~~~~  471 (485)
                      +..+..-+..+..||+|+-+|+.|..+...++|.||++.+..|...+.++.....
T Consensus       223 ~~~w~~~~~~K~~~~~A~A~y~~A~~~~~~~~~G~aia~L~~A~~~l~~a~~~~~  277 (377)
T PF03097_consen  223 PKDWRSYVQVKSAYYRALAHYHQALAAEEAKKYGEAIARLRRAEEALKEASKLAK  277 (377)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhhhh
Confidence            3578888999999999999999999999999999999999999999999987754

The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....

>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains

Probab=86.26  E-value=4.2  Score=42.58  Aligned_cols=84  Identities=14%  Similarity=0.122  Sum_probs=64.9

Q ss_pred             hHHHHHHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Q 011474          388 ELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENAL  467 (485)
Q Consensus       388 eivRLyd~ilq~l~ei~eLpg~~~~~v~~d~~l~~~l~a~~~~~~A~Rc~~lA~~y~~~~K~~EAlaL~~ra~~~~~~a~  467 (485)
                      .+..+|+.....+.+....+++..  ..-+.++..-+..+..||+|.=+||.|......+||.|++|-|+.|...+++|.
T Consensus       209 q~~~~Y~~a~~~l~~~~~~~~~~~--~~i~~~W~~~v~~K~~~f~A~A~y~~a~~~~~~~k~Ge~Ia~L~~A~~~l~~a~  286 (361)
T cd09239         209 QVVEYYKEALRALENWESNSKIIL--GKIQKEWRKLVQMKIAYYASIAHLHMGKQSEEQQKMGERVAYYQLANDKLEEAI  286 (361)
T ss_pred             HHHHHHHHHHHHHhcccccccccc--cccCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466788877777765322111000  123568889999999999999999999999999999999999999999999888


Q ss_pred             HHHHhc
Q 011474          468 KDFQRM  473 (485)
Q Consensus       468 ~~~~~~  473 (485)
                      ......
T Consensus       287 ~~~~~~  292 (361)
T cd09239         287 KNAKGQ  292 (361)
T ss_pred             HHHhCC
Confidence            765433

This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l

>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily

Probab=85.93  E-value=3.5  Score=42.82  Aligned_cols=74  Identities=18%  Similarity=0.118  Sum_probs=57.4

Q ss_pred             hHHHHHHHHHHHHHHHhc-ccCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 011474          388 ELVRLYDLLLQNTADLSD-LVSSGRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENA  466 (485)
Q Consensus       388 eivRLyd~ilq~l~ei~e-Lpg~~~~~v~~d~~l~~~l~a~~~~~~A~Rc~~lA~~y~~~~K~~EAlaL~~ra~~~~~~a  466 (485)
                      +...+|+.....+..... +++       -+.++..-+..+..+|+|.=|||+|......+|+.||++.++.|...+.++
T Consensus       214 ~~~~~y~~A~~~l~~~~~~~~~-------i~~~~~~~l~~k~~~~~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l~~~  286 (346)
T cd09247         214 GATQFLEEAKNVLRSLATDLKD-------LDPRFLRFISSCIALHEARSQLYLARRLKEAGHIGVAVGVLREALRNLKKK  286 (346)
T ss_pred             HHHHHHHHHHHHHHccCcchhh-------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence            355555555555543211 122       246899999999999999999999999999999999999999999987776


Q ss_pred             HH
Q 011474          467 LK  468 (485)
Q Consensus       467 ~~  468 (485)
                      ..
T Consensus       287 ~~  288 (346)
T cd09247         287 LP  288 (346)
T ss_pred             hc
Confidence            65

This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=85.91  E-value=1.5  Score=28.61  Aligned_cols=27  Identities=30%  Similarity=0.385  Sum_probs=23.7

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHH
Q 011474          436 CFYLARSYSLAGKRTEAYALYCRARSH  462 (485)
Q Consensus       436 c~~lA~~y~~~~K~~EAlaL~~ra~~~  462 (485)
                      ++.+|.+|...|+|.+|+.-|.+|++.
T Consensus         4 ~~~~g~~~~~~~~~~~A~~~~~~al~~   30 (34)
T PF00515_consen    4 YYNLGNAYFQLGDYEEALEYYQRALEL   30 (34)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            467999999999999999999999875

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=85.03  E-value=1.8  Score=29.22  Aligned_cols=30  Identities=30%  Similarity=0.275  Sum_probs=24.0

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 011474          437 FYLARSYSLAGKRTEAYALYCRARSHAENA  466 (485)
Q Consensus       437 ~~lA~~y~~~~K~~EAlaL~~ra~~~~~~a  466 (485)
                      ..||..|...|+|.||+.++.++....+..
T Consensus         6 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~   35 (42)
T PF13374_consen    6 NNLANAYRAQGRYEEALELLEEALEIRERL   35 (42)
T ss_dssp             HHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence            459999999999999999999999887755

>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins

Probab=80.68  E-value=12  Score=39.05  Aligned_cols=76  Identities=17%  Similarity=0.093  Sum_probs=61.8

Q ss_pred             hhHHHHHHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 011474          387 EELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENA  466 (485)
Q Consensus       387 ~eivRLyd~ilq~l~ei~eLpg~~~~~v~~d~~l~~~l~a~~~~~~A~Rc~~lA~~y~~~~K~~EAlaL~~ra~~~~~~a  466 (485)
                      .+...+|+...+.+..+.   .      .-+..+..-+..+..+|+|.=.||.|......+|+.||++.++.|.+.+..+
T Consensus       211 ~q~a~~Y~~A~~~l~~~~---~------~i~~~W~~~v~~K~~~f~A~A~y~~a~~l~e~~k~GeaIa~L~~A~~~~k~a  281 (353)
T cd09243         211 YETAKLFQKADDSLSSLD---P------EYSGKWRKYLQLKSVFYLAYAYCYHGETLLAKDKCGEAIRSLQESEKLYNKA  281 (353)
T ss_pred             HHHHHHHHHHHHHHHcCC---c------cccHHHHHHHHHHHHHHHHHHHHHHHHHhHhcchHHHHHHHHHHHHHHHHHH
Confidence            456778888777766532   1      1234688889999999999999999999999999999999999999999888


Q ss_pred             HHHHH
Q 011474          467 LKDFQ  471 (485)
Q Consensus       467 ~~~~~  471 (485)
                      ....+
T Consensus       282 ~~~~k  286 (353)
T cd09243         282 EALCK  286 (353)
T ss_pred             HHHHH
Confidence            76543

This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	485
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-12

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 67.2 bits (163), Expect = 6e-12
 Identities = 81/547 (14%), Positives = 157/547 (28%), Gaps = 170/547 (31%)

Query: 4   NSETSAMEIDDKK--SINSDQIGPKFSINVLQ-----LLKSAQMQHGLRHGDYTRYRRYC 56
           + ET   +   K   S+  D     F    +Q     +L   ++ H +   D        
Sbjct: 8   DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV------ 61

Query: 57  TARLRRLYKSL---------KFTHGRGKYTRKAITESTVTEVR--FLHLVLY--TAERAW 103
            +   RL+ +L         KF     +   K +     TE R   +   +Y    +R +
Sbjct: 62  -SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120

Query: 104 S--HAMEKRQLPDGPNARQRIYLIGRLRKAVKWATLFSNLCAIKADP-----------RT 150
           +      K  +        R+    +LR+A         L  ++              +T
Sbjct: 121 NDNQVFAKYNVS-------RLQPYLKLRQA---------LLELRPAKNVLIDGVLGSGKT 164

Query: 151 SLEAEAYASY----MKGNLLFEQDQNWETALKNFKSARAVYEELGKYGDVENQVLC---- 202
            +  +   SY         +F     W   LKN  S   V E L        Q L     
Sbjct: 165 WVALDVCLSYKVQCKMDFKIF-----WLN-LKNCNSPETVLEML--------QKLLYQID 210

Query: 203 -------------RERVEELEPSIRYCL--HKIGES-----NVKTSELLQIGEMEGPALD 242
                        + R+  ++  +R  L             NV+ ++          A +
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN-------AFN 263

Query: 243 LFKSKLEAVMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELE---KDLHVKAA 299
               K   ++   R      +T+F        IS     + +   +      K L  +  
Sbjct: 264 -LSCK---ILLTTRF---KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316

Query: 300 DSLPAEKKLVIFDKIFTAYHEARGCIRSDLASAGNAENVKDDLFGLDKAVSAVLGQRTIE 359
           D LP                E      +    +  AE+++D L   D         + + 
Sbjct: 317 D-LP---------------REV--LTTNPRRLSIIAESIRDGLATWD-------NWKHVN 351

Query: 360 RNQLLVSIVKGKLTKQRDDKTGKVTKPEELVRLYDLL--LQNTAD-----LSDLVSSGRE 412
            ++L  +I++  L            +P E  +++D L     +A      LS +     +
Sbjct: 352 CDKLT-TIIESSLNVL---------EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401

Query: 413 RKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQR 472
                V    +    SL  +  +      + S+        ++Y   +   EN     + 
Sbjct: 402 SDVMVV--VNKLHKYSLVEKQPK----ESTISI-------PSIYLELKVKLENEYALHRS 448

Query: 473 MANSDQV 479
           + +   +
Sbjct: 449 IVDHYNI 455

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	485
3r9m_A	376	BRO1 domain-containing protein BROX; protein bindi	83.62
3c3r_A	380	Programmed cell death 6-interacting protein; ALIX	82.4
3rau_A	363	Tyrosine-protein phosphatase non-receptor type 23;	81.26

>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A

Probab=83.62  E-value=3.7  Score=41.67  Aligned_cols=57  Identities=18%  Similarity=0.067  Sum_probs=52.0

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhc
Q 011474          417 EVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRM  473 (485)
Q Consensus       417 d~~l~~~l~a~~~~~~A~Rc~~lA~~y~~~~K~~EAlaL~~ra~~~~~~a~~~~~~~  473 (485)
                      +..+..-+..+..+|+|.=|||.|......+|+.||++-++.|.+.+.++....+..
T Consensus       237 ~~~W~~~v~~K~~~~~A~A~y~~a~~~~~~~k~GeaIa~L~~A~~~l~~a~~~~~~~  293 (376)
T 3r9m_A          237 SAKWRKYLHLKMCFYTAYAYCYHGETLLASDKCGEAIRSLQEAEKLYAKAEALCKEY  293 (376)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            456888999999999999999999999999999999999999999999998876543

>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C amphipathic-helix, apoptosis, HOST-virus interaction, protein transport, transport; 2.02A {Homo sapiens} PDB: 2oew_A 3c3o_A 3c3q_A

Probab=82.40  E-value=4.8  Score=40.88  Aligned_cols=72  Identities=8%  Similarity=-0.053  Sum_probs=58.3

Q ss_pred             hHHHHHHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Q 011474          388 ELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENAL  467 (485)
Q Consensus       388 eivRLyd~ilq~l~ei~eLpg~~~~~v~~d~~l~~~l~a~~~~~~A~Rc~~lA~~y~~~~K~~EAlaL~~ra~~~~~~a~  467 (485)
                      ++..+|+.....+.    +.+      .-+..+..-+..+..+|+|.=|||.|...-..+|+.||++.+..|.+.+.++.
T Consensus       240 ~~~~~Y~~A~~~l~----~~~------~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e~~k~GeaIa~L~~A~~~l~~a~  309 (380)
T 3c3r_A          240 QAADYFGDAFKQCQ----YKD------TLPKEVFPVLAAKHCIMQANAEYHQSILAKQQKKFGEEIARLQHAAELIKTVA  309 (380)
T ss_dssp             HHHHHHHHHHHHHT----TCC------CSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc----ccc------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH
Confidence            35566666666655    222      12357888899999999999999999999999999999999999999999887


Q ss_pred             HH
Q 011474          468 KD  469 (485)
Q Consensus       468 ~~  469 (485)
                      ..
T Consensus       310 ~~  311 (380)
T 3c3r_A          310 SR  311 (380)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain, hydrolase; 1.95A {Homo sapiens}

Probab=81.26  E-value=8.5  Score=38.78  Aligned_cols=54  Identities=17%  Similarity=0.129  Sum_probs=49.7

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHH
Q 011474          417 EVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDF  470 (485)
Q Consensus       417 d~~l~~~l~a~~~~~~A~Rc~~lA~~y~~~~K~~EAlaL~~ra~~~~~~a~~~~  470 (485)
                      +.++..-+..+..+|+|.=|||.|......+|+.||++-++.|...+.+|...-
T Consensus       236 ~~~w~~~v~~K~~~~~A~A~y~~a~~~~e~~k~GeaIa~L~~A~~~l~~a~~~~  289 (363)
T 3rau_A          236 QKDWKKLVQMKIYYFAAVAHLHMGKQAEEQQKFGERVAYFQSALDKLNEAIKLA  289 (363)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            468888899999999999999999999999999999999999999999887653

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00