Citrus Sinensis ID: 011488

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480----
MASRPIVPRQARGEAVVGGVAIKQQKKAGAVVAEGKNRHALNDIGNLVTVNGVDGKPQPQISRPITRSFCAQLLANAQAAAENNKKQACVNMNKSTVLLDGIGVGKKALPAKPVQKKVTVKPKAQAQAQPQPQPRPQAQAQQPQPQEVIELSPDTEKEKVAANKKKKEGEVSAKKKSQTLTSVLTARSKAACGLAQKPKEQIVDIDAKDANNDLAGVEYVEDIYKFYKLVENESRPCSYIHTQTEITERMRAILVDWLIDVHQEFELSQETLYLTINIIDRFLSVKVVSRRELQLVGMGAMLIASKYEEIWAPEVNDLVRIADNAYSHPEVLAMEKTILGKLEWTLTVPTYYVFLVRFIKASIPDQDMENTVYFLAELGMMHYDTLMFSPSMVAASAVYAARCTLNRSPAWTDTLRFHTGFSETQLMDCARLLVYFHSKASENRLQVVHKKYARTQRGSVSLLPPAKSLLSGDRSAGGPMKNTA
cccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccHHHcHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccccccccEEEEccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHHHHHHcccccccEEccccccccccccccccccccccc
ccccccccHHHcccccccccHHHHHHccccccHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccHHHHccccccccccccccccccccccccccHHccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccHccHHcHHHcccccccccccccccHcccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccHHHHHHccccHHHHHHHHHHHHHHHHHccccccHEEEEcccccHHcHHcccccccHHHHHHHHccccccccc
masrpivprqargeavVGGVAIKQQKKAGAVVAegknrhalndignlvtvngvdgkpqpqisrpiTRSFCAQLLANAQAAAENNKKQACVNMNKSTVLLdgigvgkkalpakpvqkkvtvkpkaqaqaqpqpqprpqaqaqqpqpqevielspdTEKEKVAANKkkkegevsakkKSQTLTSVLTARSKAAcglaqkpkeqivdidakdanndlagVEYVEDIYKFYKLVenesrpcsyihTQTEITERMRAILVDWLIDVHQEFELSQETLYLTINIIDRFLSVKVVSRRELQLVGMGAMLIASKYEEIWAPEVNDLVRIadnayshpeVLAMEKTILGKLEWTLTVPTYYVFLVRFIkasipdqdmeNTVYFLAELGMMhydtlmfspSMVAASAVYAARCtlnrspawtdtlrfhtgfsetqLMDCARLLVYFHSKASENRLQVVHKKYartqrgsvsllppaksllsgdrsaggpmknta
masrpivprqargeavvggvAIKQQKKAGAVVAegknrhalndignlvtvngvdgkpqPQISRPITRSFCAQLLANAQAAAENNKKQACVNMNKSTVLLDGIGVGKKALPAKPVQKKVTVKPKAQaqaqpqpqprpqaqaqqpqpqevielspdteKEKVAankkkkegevsakkksqtltsVLTARSKAacglaqkpkeqivDIDAKDANNDLAGVEYVEDIYKFYKLvenesrpcsYIHTQTEITERMRAILVDWLIDVHQEFELSQETLYLTINIIDRFLSVKVVSRRELQLVGMGAMLIASKYEEIWAPEVNDLVRIADNAYSHPEVLAMEKTILGKLEWTLTVPTYYVFLVRFIkasipdqdMENTVYFLAELGMMHYDTLMFSPSMVAASAVYAARCTLNRSPAWTDTLRFHTGFSETQLMDCARLLVYFHSKASENRLQVVHKKyartqrgsvsllppaksllsgdrsaggpmknta
MASRPIVPRQARGEAVVGGVAIKQQKKAGAVVAEGKNRHALNDIGNLVTVNGVDGKPQPQISRPITRSFCaqllanaqaaaennkkqaCVNMNKSTVLLDGIGVGKKALpakpvqkkvtvkpkaqaqaqpqpqprpqaqaqqpqpqEVIELSPDTekekvaankkkkegevsakkksQTLTSVLTARSKAACGLAQKPKEQIVDIDAKDANNDLAGVEYVEDIYKFYKLVENESRPCSYIHTQTEITERMRAILVDWLIDVHQEFELSQETLYLTINIIDRFLSVKVVSRRELQLVGMGAMLIASKYEEIWAPEVNDLVRIADNAYSHPEVLAMEKTILGKLEWTLTVPTYYVFLVRFIKASIPDQDMENTVYFLAELGMMHYDTLMFSPSMVAASAVYAARCTLNRSPAWTDTLRFHTGFSETQLMDCARLLVYFHSKASENRLQVVHKKYARTQRGSVSLLPPAKSLLSGDRSAGGPMKNTA
***************VVGGVAIKQQKKAGAVVAEGKNRHALNDIGNLVTVNGVD*********PITRSFCAQLLANAQAA******QACVNMNKSTVLLDGIGVGK**********************************************************************************************QIVDIDAKDANNDLAGVEYVEDIYKFYKLVENESRPCSYIHTQTEITERMRAILVDWLIDVHQEFELSQETLYLTINIIDRFLSVKVVSRRELQLVGMGAMLIASKYEEIWAPEVNDLVRIADNAYSHPEVLAMEKTILGKLEWTLTVPTYYVFLVRFIKASIPDQDMENTVYFLAELGMMHYDTLMFSPSMVAASAVYAARCTLNRSPAWTDTLRFHTGFSETQLMDCARLLVYFHSKASENRLQVVHKKY********************************
*****************************************NDIGNL********************************************************************************************************************************************************EQIVDIDAKDANNDLAGVEYVEDIYKFYKLVENESRPCSYIHTQTEITERMRAILVDWLIDVHQEFELSQETLYLTINIIDRFLSVKVVSRRELQLVGMGAMLIASKYEEIWAPEVNDLVRIADNAYSHPEVLAMEKTILGKLEWTLTVPTYYVFLVRFIKASIPDQDMENTVYFLAELGMMHYDTLMFSPSMVAASAVYAARCTLNRSPAWTDTLRFHTGFSETQLMDCARLLVYFHSKASENRLQVVHKKYARTQRGSVSLLPPA******************
MASRPIVPRQARGEAVVGGVAI*********VAEGKNRHALNDIGNLVTVNGVDGKPQPQISRPITRSFCAQLLANAQAAAENNKKQACVNMNKSTVLLDGIGVGKKALPAKP*********************************EVIELSPD***********************QTLTSVLTARSKAACGLAQKPKEQIVDIDAKDANNDLAGVEYVEDIYKFYKLVENESRPCSYIHTQTEITERMRAILVDWLIDVHQEFELSQETLYLTINIIDRFLSVKVVSRRELQLVGMGAMLIASKYEEIWAPEVNDLVRIADNAYSHPEVLAMEKTILGKLEWTLTVPTYYVFLVRFIKASIPDQDMENTVYFLAELGMMHYDTLMFSPSMVAASAVYAARCTLNRSPAWTDTLRFHTGFSETQLMDCARLLVYFHSKASENRLQVVHKKYARTQRGSVSLLPPAKSLL**************
*****************************************N***NLVTVNG*********SR*********LL*NA*********************************************************************************************************************AQKPKEQIVDIDAKDANNDLAGVEYVEDIYKFYKLVENESRPCSYIHTQTEITERMRAILVDWLIDVHQEFELSQETLYLTINIIDRFLSVKVVSRRELQLVGMGAMLIASKYEEIWAPEVNDLVRIADNAYSHPEVLAMEKTILGKLEWTLTVPTYYVFLVRFIKASIPDQDMENTVYFLAELGMMHYDTLMFSPSMVAASAVYAARCTLNRSPAWTDTLRFHTGFSETQLMDCARLLVYFHSKASENRLQVVHKKYARTQRGSVSLLPPAKSLLSGDRS*********
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MASRPIVPRQARGEAVVGGVAIKQQKKAGAVVAEGKNRHALNDIGNLVTVNGVDGKPQPQISRPITRSFCAQLLANAQAAAENNKKQACVNMNKSTVLLDGIGVGKKALPAKPVQKKVTVKPKAQAQAQPQPQPRPQAQAQQPQPQEVIELSPDTEKEKVAANKKKKEGEVSAKKKSQTLTSVLTARSKAACGLAQKPKEQIVDIDAKDANNDLAGVEYVEDIYKFYKLVENESRPCSYIHTQTEITERMRAILVDWLIDVHQEFELSQETLYLTINIIDRFLSVKVVSRRELQLVGMGAMLIASKYEEIWAPEVNDLVRIADNAYSHPEVLAMEKTILGKLEWTLTVPTYYVFLVRFIKASIPDQDMENTVYFLAELGMMHYDTLMFSPSMVAASAVYAARCTLNRSPAWTDTLRFHTGFSETQLMDCARLLVYFHSKASENRLQVVHKKYARTQRGSVSLLPPAKSLLSGDRSAGGPMKNTA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query484 2.2.26 [Sep-21-2011]
P25011454 G2/mitotic-specific cycli no no 0.909 0.969 0.621 1e-152
P34800473 G2/mitotic-specific cycli N/A no 0.909 0.930 0.6 1e-149
P34801441 G2/mitotic-specific cycli N/A no 0.894 0.981 0.610 1e-145
Q39067445 Cyclin-B1-2 OS=Arabidopsi yes no 0.884 0.961 0.567 1e-144
Q39069414 Cyclin-B1-3 OS=Arabidopsi no no 0.845 0.987 0.538 1e-132
P30183428 Cyclin-B1-1 OS=Arabidopsi no no 0.867 0.981 0.515 1e-122
Q0DH40449 Cyclin-B1-5 OS=Oryza sati yes no 0.840 0.906 0.506 1e-113
Q0JIF2449 Cyclin-B1-1 OS=Oryza sati no no 0.661 0.712 0.567 1e-107
P25012257 G2/mitotic-specific cycli no no 0.524 0.988 0.704 1e-106
O48790387 Cyclin-B1-4 OS=Arabidopsi no no 0.654 0.819 0.558 1e-101
>sp|P25011|CCNB1_SOYBN G2/mitotic-specific cyclin S13-6 OS=Glycine max PE=2 SV=1 Back     alignment and function desciption
 Score =  540 bits (1391), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 295/475 (62%), Positives = 351/475 (73%), Gaps = 35/475 (7%)

Query: 1   MASRPIVPRQARGEAVVGGVAIKQQKKAGAVVAEGKNRHALNDIGNLVTVNGV-DGKPQP 59
           MASR +  +QARGEAVVGG   KQQKK G  VA+G+NR AL DIGNL  V GV D KP  
Sbjct: 1   MASRIVQQQQARGEAVVGGG--KQQKKNG--VADGRNRKALGDIGNLANVRGVVDAKP-- 54

Query: 60  QISRPITRSF--CAQLLANAQAAAENNKKQACVNM-NKSTVLLDGIGVGKKALPAKPVQK 116
             +RPITRSF       A A AAA+N+K+QAC N+     V  +G+ V K+A P KPV K
Sbjct: 55  --NRPITRSFGAQLLANAQAAAAADNSKRQACANVAGPPAVANEGVAVAKRAAP-KPVSK 111

Query: 117 KVTVKPKAQAQAQPQPQPRPQAQAQQPQPQEVIELSPDTEKEKVAANKKKKEGEVSAKKK 176
           KV VKPK                     P E +     +  +K     KKKEG+ + KKK
Sbjct: 112 KVIVKPK---------------------PSEKVTDIDASPDKKEVLKDKKKEGDANPKKK 150

Query: 177 SQ-TLTSVLTARSKAACGLAQKPKEQIVDIDAKDANNDLAGVEYVEDIYKFYKLVENESR 235
           SQ TLTSVLTARSKAACG+  KPKEQI+DIDA D +N+LA VEY++DIYKFYKLVENESR
Sbjct: 151 SQHTLTSVLTARSKAACGITNKPKEQIIDIDASDVDNELAAVEYIDDIYKFYKLVENESR 210

Query: 236 PCSYIHTQTEITERMRAILVDWLIDVHQEFELSQETLYLTINIIDRFLSVKVVSRRELQL 295
           P  YI +Q EI ERMRAILVDWLIDVH +FELS ETLYLTINIIDRFL+VK V RRELQL
Sbjct: 211 PHDYIGSQPEINERMRAILVDWLIDVHTKFELSLETLYLTINIIDRFLAVKTVPRRELQL 270

Query: 296 VGMGAMLIASKYEEIWAPEVNDLVRIADNAYSHPEVLAMEKTILGKLEWTLTVPTYYVFL 355
           VG+ AML+ASKYEEIW PEVND V ++D AY+H  +L MEKTIL KLEWTLTVPT  VFL
Sbjct: 271 VGISAMLMASKYEEIWPPEVNDFVCLSDRAYTHEHILTMEKTILNKLEWTLTVPTPLVFL 330

Query: 356 VRFIKASIPDQDMENTVYFLAELGMMHYDTLMFSPSMVAASAVYAARCTLNRSPAWTDTL 415
           VRFIKAS+PDQ+++N  +FL+ELGMM+Y TLM+ PSMVAASAV AARCTLN++P W +TL
Sbjct: 331 VRFIKASVPDQELDNMAHFLSELGMMNYATLMYCPSMVAASAVLAARCTLNKAPFWNETL 390

Query: 416 RFHTGFSETQLMDCARLLVYFHSKASENRLQVVHKKYARTQRGSVSLLPPAKSLL 470
           + HTG+S+ QLMDCARLLV F+S     +L+VV++KY+  Q+G+V++LPPAK LL
Sbjct: 391 KLHTGYSQEQLMDCARLLVGFYSTLENGKLRVVYRKYSDPQKGAVAVLPPAKFLL 445
Essential for the control of the cell cycle at the G2/M (mitosis) transition.
Glycine max (taxid: 3847)
>sp|P34800|CCN1_ANTMA G2/mitotic-specific cyclin-1 OS=Antirrhinum majus PE=2 SV=1 Back     alignment and function description
>sp|P34801|CCN2_ANTMA G2/mitotic-specific cyclin-2 OS=Antirrhinum majus PE=2 SV=1 Back     alignment and function description
>sp|Q39067|CCB12_ARATH Cyclin-B1-2 OS=Arabidopsis thaliana GN=CYCB1-2 PE=1 SV=2 Back     alignment and function description
>sp|Q39069|CCB13_ARATH Cyclin-B1-3 OS=Arabidopsis thaliana GN=CYCB1-3 PE=2 SV=2 Back     alignment and function description
>sp|P30183|CCB11_ARATH Cyclin-B1-1 OS=Arabidopsis thaliana GN=CYCB1-1 PE=1 SV=2 Back     alignment and function description
>sp|Q0DH40|CCB15_ORYSJ Cyclin-B1-5 OS=Oryza sativa subsp. japonica GN=CYCB1-5 PE=3 SV=1 Back     alignment and function description
>sp|Q0JIF2|CCB11_ORYSJ Cyclin-B1-1 OS=Oryza sativa subsp. japonica GN=CYCB1-1 PE=2 SV=2 Back     alignment and function description
>sp|P25012|CCNB2_SOYBN G2/mitotic-specific cyclin S13-7 (Fragment) OS=Glycine max PE=2 SV=1 Back     alignment and function description
>sp|O48790|CCB14_ARATH Cyclin-B1-4 OS=Arabidopsis thaliana GN=CYCB1-4 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query484
224139678450 cyclin b [Populus trichocarpa] gi|222867 0.921 0.991 0.653 1e-167
1835260445 mitotic cyclin [Sesbania rostrata] 0.913 0.993 0.654 1e-165
224089937457 predicted protein [Populus trichocarpa] 0.904 0.958 0.665 1e-162
255552467455 cyclin B, putative [Ricinus communis] gi 0.913 0.971 0.673 1e-162
225440137453 PREDICTED: G2/mitotic-specific cyclin S1 0.917 0.980 0.637 1e-159
3253135454 cyclin [Lupinus luteus] gi|4884726|gb|AA 0.909 0.969 0.602 1e-156
307136021455 mitotic B-type cyclin [Cucumis melo subs 0.911 0.969 0.629 1e-156
4884728459 mitotic cyclin B1-3 [Lupinus luteus] gi| 0.915 0.965 0.607 1e-156
225448497462 PREDICTED: G2/mitotic-specific cyclin-1 0.917 0.961 0.607 1e-155
356571892455 PREDICTED: G2/mitotic-specific cyclin S1 0.921 0.980 0.629 1e-155
>gi|224139678|ref|XP_002323225.1| cyclin b [Populus trichocarpa] gi|222867855|gb|EEF04986.1| cyclin b [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  594 bits (1532), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 313/479 (65%), Positives = 358/479 (74%), Gaps = 33/479 (6%)

Query: 1   MASRPIVPRQARGEAVVGGVAIKQQKKAGAVVAEGKNRHALNDIGNLVTVNGVDGKPQPQ 60
           MASR    +  RGEAVVG   + +  K  A  AE KNR  L DIGNLVTV G++GK QP 
Sbjct: 1   MASRVQQQQAIRGEAVVG---VNKNVKKIAAAAEVKNRRVLGDIGNLVTVRGIEGKQQP- 56

Query: 61  ISRPITRSF--CAQLLANAQAAAENNKKQACVNMNK-STVLLDGIGV-GKKALPAKPVQK 116
            +RP+TRSF       A A AAAENNKKQ CV   K     +DG+    +K    KP QK
Sbjct: 57  -NRPVTRSFGAQLLANAQAAAAAENNKKQVCVKAEKVPAAGVDGVAAEARKVAVRKPAQK 115

Query: 117 KVTVKPKAQAQAQPQPQPRPQAQAQQPQPQEVIELSPDTEKEKVAANKKKKEGEVSAKKK 176
           KVTVKPK                     P+EV E+SPDTE++      KKKEGE S KK 
Sbjct: 116 KVTVKPK---------------------PEEVTEISPDTEEK---PGNKKKEGEGSTKKN 151

Query: 177 SQTLTSVLTARSKAACGLAQKPKEQIVDIDAKDANNDLAGVEYVEDIYKFYKLVENESRP 236
             TL+SVLTARSKAACG+A KPK Q++DIDA D NNDLAGVEYVEDIYKFYKLVENESRP
Sbjct: 152 KPTLSSVLTARSKAACGVANKPKGQVIDIDAADVNNDLAGVEYVEDIYKFYKLVENESRP 211

Query: 237 CSYIHTQTEITERMRAILVDWLIDVHQEFELSQETLYLTINIIDRFLSVKVVSRRELQLV 296
             Y+  Q EI E+MRAILVDWLIDV  +FELS ETLYLTINIIDRFLSVK V R+ELQLV
Sbjct: 212 NDYMDRQPEINEKMRAILVDWLIDVQHKFELSPETLYLTINIIDRFLSVKTVPRKELQLV 271

Query: 297 GMGAMLIASKYEEIWAPEVNDLVRIADNAYSHPEVLAMEKTILGKLEWTLTVPTYYVFLV 356
           GM A L+ASKYEEIWAPEVNDLV I+D AY+H ++L MEKTIL  LEWTLTVPT+YVFL 
Sbjct: 272 GMSATLMASKYEEIWAPEVNDLVCISDRAYTHEQILVMEKTILANLEWTLTVPTHYVFLA 331

Query: 357 RFIKASIPDQDMENTVYFLAELGMMHYDTLMFSPSMVAASAVYAARCTLNRSPAWTDTLR 416
           RFIKASIP++ MEN VYFLAELG+MHYDT+MF PSMVAASAVY ARCTLN++P+WTDTL+
Sbjct: 332 RFIKASIPEKGMENMVYFLAELGLMHYDTVMFCPSMVAASAVYVARCTLNKTPSWTDTLK 391

Query: 417 FHTGFSETQLMDCARLLVYFHSKASENRLQVVHKKYARTQRGSVSLLPPAKSLLSGDRS 475
            HTGFSE QL DCA LLVYFHSKA+E+RLQ V++KY++ +RG+V+LLPPAKSLL G  S
Sbjct: 392 KHTGFSEPQLKDCAGLLVYFHSKAAEHRLQSVYRKYSKPERGAVALLPPAKSLLPGGLS 450

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|1835260|emb|CAA99990.1| mitotic cyclin [Sesbania rostrata] Back     alignment and taxonomy information
>gi|224089937|ref|XP_002308872.1| predicted protein [Populus trichocarpa] gi|222854848|gb|EEE92395.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255552467|ref|XP_002517277.1| cyclin B, putative [Ricinus communis] gi|223543540|gb|EEF45070.1| cyclin B, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225440137|ref|XP_002283152.1| PREDICTED: G2/mitotic-specific cyclin S13-6 [Vitis vinifera] gi|297741679|emb|CBI32811.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|3253135|gb|AAC61888.1| cyclin [Lupinus luteus] gi|4884726|gb|AAD31789.1| mitotic cyclin B1-2 [Lupinus luteus] Back     alignment and taxonomy information
>gi|307136021|gb|ADN33876.1| mitotic B-type cyclin [Cucumis melo subsp. melo] Back     alignment and taxonomy information
>gi|4884728|gb|AAD31790.1|AF126107_1 mitotic cyclin B1-3 [Lupinus luteus] gi|3253137|gb|AAC61889.1| cyclin [Lupinus luteus] Back     alignment and taxonomy information
>gi|225448497|ref|XP_002273378.1| PREDICTED: G2/mitotic-specific cyclin-1 [Vitis vinifera] gi|297736580|emb|CBI25451.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356571892|ref|XP_003554105.1| PREDICTED: G2/mitotic-specific cyclin S13-6 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query484
TAIR|locus:2160722445 CYC1BAT [Arabidopsis thaliana 0.601 0.653 0.672 3.5e-122
TAIR|locus:2126377428 CYCB1;1 "CYCLIN B1;1" [Arabido 0.615 0.696 0.651 3.4e-109
TAIR|locus:2080717414 CYCB1;3 "CYCLIN B1;3" [Arabido 0.588 0.688 0.658 3.9e-108
TAIR|locus:2043818387 CYCB1;4 "Cyclin B1;4" [Arabido 0.584 0.731 0.591 5.5e-92
TAIR|locus:2030482429 CYCB2;3 "Cyclin B2;3" [Arabido 0.570 0.643 0.483 2e-69
TAIR|locus:2014574431 CYCB2;4 "CYCLIN B2;4" [Arabido 0.557 0.626 0.471 8.7e-67
TAIR|locus:2127948429 CYCB2;2 "Cyclin B2;2" [Arabido 0.578 0.652 0.459 2.8e-66
TAIR|locus:2057243429 CYCB2;1 "Cyclin B2;1" [Arabido 0.564 0.636 0.481 4.5e-66
DICTYBASE|DDB_G0275493436 cycB "G2/M-specific cyclinB" [ 0.539 0.598 0.384 1.6e-49
UNIPROTKB|P13351392 ccnb2 "G2/mitotic-specific cyc 0.574 0.709 0.378 9.8e-48
TAIR|locus:2160722 CYC1BAT [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1061 (378.5 bits), Expect = 3.5e-122, Sum P(2) = 3.5e-122
 Identities = 197/293 (67%), Positives = 246/293 (83%)

Query:   179 TLTSVLTARSKAACGLAQKPKEQIVDIDAKDANNDLAGVEYVEDIYKFYKLVENESRPCS 238
             T +SVL+ARSKAACG+  KPK  I+DID  D +N LA VEYV+D+Y FYK VE ES+P  
Sbjct:   144 TYSSVLSARSKAACGIVNKPK--IIDIDESDKDNHLAAVEYVDDMYSFYKEVEKESQPKM 201

Query:   239 YIHTQTEITERMRAILVDWLIDVHQEFELSQETLYLTINIIDRFLSVKVVSRRELQLVGM 298
             Y+H QTE+ E+MRAIL+DWL++VH +FEL+ ETLYLT+NIIDRFLSVK V +RELQLVG+
Sbjct:   202 YMHIQTEMNEKMRAILIDWLLEVHIKFELNLETLYLTVNIIDRFLSVKAVPKRELQLVGI 261

Query:   299 GAMLIASKYEEIWAPEVNDLVRIADNAYSHPEVLAMEKTILGKLEWTLTVPTYYVFLVRF 358
              A+LIASKYEEIW P+VNDLV + DNAYS  ++L MEK ILG LEW LTVPT YVFLVRF
Sbjct:   262 SALLIASKYEEIWPPQVNDLVYVTDNAYSSRQILVMEKAILGNLEWYLTVPTQYVFLVRF 321

Query:   359 IKASIPDQDMENTVYFLAELGMMHYDTLMFSPSMVAASAVYAARCTLNRSPAWTDTLRFH 418
             IKAS+ D +MEN V+FLAELGMMHYDTL F PSM+AASAVY ARC+LN+SPAWTDTL+FH
Sbjct:   322 IKASMSDPEMENMVHFLAELGMMHYDTLTFCPSMLAASAVYTARCSLNKSPAWTDTLQFH 381

Query:   419 TGFSETQLMDCARLLVYFHSKASENRLQVVHKKYARTQRGSVSLLPPAKSLLS 471
             TG++E+++MDC++LL + HS+  E+RL+ V+KKY++ + G V+++ PAKSLLS
Sbjct:   382 TGYTESEIMDCSKLLAFLHSRCGESRLRAVYKKYSKAENGGVAMVSPAKSLLS 434
GO:0000079 "regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0016538 "cyclin-dependent protein serine/threonine kinase regulator activity" evidence=ISS
GO:0019901 "protein kinase binding" evidence=IEA
GO:0051726 "regulation of cell cycle" evidence=IEA;ISS
GO:0010332 "response to gamma radiation" evidence=IEP
GO:0005737 "cytoplasm" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
TAIR|locus:2126377 CYCB1;1 "CYCLIN B1;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080717 CYCB1;3 "CYCLIN B1;3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043818 CYCB1;4 "Cyclin B1;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2030482 CYCB2;3 "Cyclin B2;3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2014574 CYCB2;4 "CYCLIN B2;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127948 CYCB2;2 "Cyclin B2;2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057243 CYCB2;1 "Cyclin B2;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0275493 cycB "G2/M-specific cyclinB" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|P13351 ccnb2 "G2/mitotic-specific cyclin-B2" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q0DH40CCB15_ORYSJNo assigned EC number0.50680.84090.9064yesno
P34801CCN2_ANTMANo assigned EC number0.61020.89460.9818N/Ano
P34800CCN1_ANTMANo assigned EC number0.60.90900.9302N/Ano
Q39067CCB12_ARATHNo assigned EC number0.56780.88420.9617yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
CYCB1-2
cyclin b (417 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.X.1153.1
hypothetical protein; Excises uracil residues from the DNA which can arise as a result of misin [...] (216 aa)
      • 0.702
wus
SubName- Full=WUS protein; (264 aa)
      • 0.702
CDKD
hypothetical protein (416 aa)
      • 0.700
estExt_Genewise1_v1.C_LG_IX3930
proliferating cell nuclear antigen (PCNA); This protein is an auxiliary protein of DNA polymera [...] (265 aa)
      • 0.510
estExt_Genewise1_v1.C_LG_I1046
proliferating cell nuclear antigen (PCNA); This protein is an auxiliary protein of DNA polymera [...] (268 aa)
      • 0.510
RBL901
SubName- Full=Putative uncharacterized protein;; Regulator of biological processes that recruit [...] (965 aa)
      • 0.502

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query484
pfam00134127 pfam00134, Cyclin_N, Cyclin, N-terminal domain 1e-63
COG5024440 COG5024, COG5024, Cyclin [Cell division and chromo 9e-48
pfam02984117 pfam02984, Cyclin_C, Cyclin, C-terminal domain 2e-43
cd0004388 cd00043, CYCLIN, Cyclin box fold 1e-23
smart0038583 smart00385, CYCLIN, domain present in cyclins, TFI 2e-19
smart0038583 smart00385, CYCLIN, domain present in cyclins, TFI 3e-18
cd0004388 cd00043, CYCLIN, Cyclin box fold 1e-17
>gnl|CDD|215740 pfam00134, Cyclin_N, Cyclin, N-terminal domain Back     alignment and domain information 
 Score =  202 bits (515), Expect = 1e-63
 Identities = 67/127 (52%), Positives = 89/127 (70%), Gaps = 1/127 (0%)

Query: 222 DIYKFYKLVENESRPCS-YIHTQTEITERMRAILVDWLIDVHQEFELSQETLYLTINIID 280
           DIY + + +E E RP   Y+  Q +I  +MRAIL+DWL++VH+EF+L  ETLYL +N +D
Sbjct: 1   DIYAYLRELEEEDRPPPDYLDQQPDINPKMRAILIDWLVEVHEEFKLLPETLYLAVNYLD 60

Query: 281 RFLSVKVVSRRELQLVGMGAMLIASKYEEIWAPEVNDLVRIADNAYSHPEVLAMEKTILG 340
           RFLS + V R +LQLVG+  +LIA+KYEEI+ P V D V I DNAY+  E+L ME  IL 
Sbjct: 61  RFLSKQPVPRTKLQLVGVTCLLIAAKYEEIYPPSVEDFVYITDNAYTKEEILRMELLILS 120

Query: 341 KLEWTLT 347
            L W L+
Sbjct: 121 TLNWDLS 127

Cyclins regulate cyclin dependent kinases (CDKs). Human cyclin-O is a Uracil-DNA glycosylase that is related to other cyclins. Cyclins contain two domains of similar all-alpha fold, of which this family corresponds with the N-terminal domain. Length = 127
>gnl|CDD|227357 COG5024, COG5024, Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|217307 pfam02984, Cyclin_C, Cyclin, C-terminal domain Back     alignment and domain information
>gnl|CDD|238003 cd00043, CYCLIN, Cyclin box fold Back     alignment and domain information
>gnl|CDD|214641 smart00385, CYCLIN, domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>gnl|CDD|214641 smart00385, CYCLIN, domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>gnl|CDD|238003 cd00043, CYCLIN, Cyclin box fold Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 484
KOG0653391 consensus Cyclin B and related kinase-activating p 100.0
COG5024440 Cyclin [Cell division and chromosome partitioning] 100.0
KOG0654359 consensus G2/Mitotic-specific cyclin A [Cell cycle 100.0
KOG0655408 consensus G1/S-specific cyclin E [Cell cycle contr 100.0
KOG0656335 consensus G1/S-specific cyclin D [Cell cycle contr 100.0
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 99.93
TIGR00569305 ccl1 cyclin ccl1. University). 99.88
PF02984118 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR 99.87
KOG0834323 consensus CDK9 kinase-activating protein cyclin T 99.85
KOG0835367 consensus Cyclin L [General function prediction on 99.79
KOG0794264 consensus CDK8 kinase-activating protein cyclin C 99.75
COG5333297 CCL1 Cdk activating kinase (CAK)/RNA polymerase II 99.7
PRK00423310 tfb transcription initiation factor IIB; Reviewed 99.59
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 99.53
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 99.47
KOG2496325 consensus Cdk activating kinase (CAK)/RNA polymera 99.25
KOG1597308 consensus Transcription initiation factor TFIIB [T 99.22
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 99.1
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 98.76
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 98.74
PF08613149 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eu 98.54
KOG4164497 consensus Cyclin ik3-1/CABLES [Cell cycle control, 97.75
KOG1598 521 consensus Transcription initiation factor TFIIIB, 97.4
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 96.69
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 95.77
KOG1674218 consensus Cyclin [General function prediction only 95.21
PRK00423310 tfb transcription initiation factor IIB; Reviewed 95.1
KOG1675343 consensus Predicted cyclin [General function predi 93.48
PF02984118 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR 91.41
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 91.03
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 88.22
KOG0834323 consensus CDK9 kinase-activating protein cyclin T 83.82
>KOG0653 consensus Cyclin B and related kinase-activating proteins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=4.6e-50  Score=419.67  Aligned_cols=286  Identities=45%  Similarity=0.658  Sum_probs=261.3

Q ss_pred             HHHHhhhhhhhcccCCCCCccccCCCcCCCCCccccccHHHHHHHHHHHHhhcCCCCccCcCccccHHHHHHHHHHHHHH
Q 011488          182 SVLTARSKAACGLAQKPKEQIVDIDAKDANNDLAGVEYVEDIYKFYKLVENESRPCSYIHTQTEITERMRAILVDWLIDV  261 (484)
Q Consensus       182 s~l~~rs~~a~~~~~~p~~~i~diD~~d~~n~l~~~eY~~DIy~~l~~~E~e~~~~dyl~~Q~eIt~~mR~~LVdWLieV  261 (484)
                      +++...+...|+....   .+.|+|..|..|++++.||++|||.||+..|.++.+..|+..|++++++||.++||||++|
T Consensus        92 ~~~~~~~~~~~~~~~~---~~~dl~~~d~~~~~~~~ey~~di~~~l~~~e~~~~p~~~~~~~~e~~~~mR~iLvdwlvev  168 (391)
T KOG0653|consen   92 SVLESTSKLASGLSDL---SILDLDSEDKSDPSMIVEYVQDIFEYLRQLELEFLPLSYDISQSEIRAKMRAILVDWLVEV  168 (391)
T ss_pred             ccchhhhhhhcccccc---CccCcchhcccCcHHHHHHHHHHHHHHHHHHHhhCchhhhcccccccHHHHHHHHHHHHHh
Confidence            5555566667777543   4789999999999999999999999999998777888888999999999999999999999


Q ss_pred             HHHcCCCHHHHHHHHHHHHHhhcccccccchhHHHHHHHHH-HHhhhccccCCCHHHHHHHhccCCCHHHHHHHHHHHHH
Q 011488          262 HQEFELSQETLYLTINIIDRFLSVKVVSRRELQLVGMGAML-IASKYEEIWAPEVNDLVRIADNAYSHPEVLAMEKTILG  340 (484)
Q Consensus       262 ~~~f~L~~eTl~LAV~llDRfLs~~~V~~~~LQLvgiaCL~-IAsK~EE~~~P~l~dlv~isd~~yt~~~Il~mE~~IL~  340 (484)
                      |.+|+|.+|||||||+|+||||+...|++.++||+|++||| |||||||.++|.+.||+++++++||+++|++||+.||+
T Consensus       169 h~~F~L~~ETL~LaVnliDRfL~~~~v~~~~lqLvgvsalf~IA~K~EE~~~P~v~dlv~isd~~~s~~~il~mE~~il~  248 (391)
T KOG0653|consen  169 HEKFGLSPETLYLAVNLIDRFLSKVKVPLKKLQLVGVSALLSIACKYEEISLPSVEDLVLITDGAYSREEILRMEKYILN  248 (391)
T ss_pred             hhhcCcCHHHHHHHHHHHHHHHHHhcccHHHhhHHhHHHHHHHHHhhhhccCCccceeEeeeCCccchHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999977 99999999999999999999999999999999999999


Q ss_pred             HcCCcccCCCHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHhCCCCCChHHHHhhhC
Q 011488          341 KLEWTLTVPTYYVFLVRFIKASIPDQDMENTVYFLAELGMMHYDTLMFSPSMVAASAVYAARCTLNRSPAWTDTLRFHTG  420 (484)
Q Consensus       341 ~L~w~L~~PTp~~FL~~fl~~~~~d~el~~lA~yL~ELsL~d~~~l~~~PS~IAAAal~lA~~~l~~~p~W~~~L~~~tg  420 (484)
                      .|+|++.+|||+.||++|+++...+.+...++.|++|++++||.++.++||.+|+|++++++.++.....|..++.+|+|
T Consensus       249 ~L~f~l~~p~~~~FLrr~~ka~~~d~~~~~~~k~~~El~l~d~~~~~~~~s~~aaa~~~~~~~~~~~~~~w~~~~~~~sg  328 (391)
T KOG0653|consen  249 VLEFDLSVPTPLSFLRRFLKAADYDIKTRTLVKYLLELSLCDYSMLSIPPSSSAAASFTLALRMLSKGDVWSPTLEHYSG  328 (391)
T ss_pred             ccCeeecCCchHHHHHHHHHhhhcchhHHHHHHHHHHHHHhhhHHhccCcHHHHHHHHHHHHHHhccCCccCCCCeeccC
Confidence            99999999999999999999988888899999999999999999999999999999999999999877679999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhhcCcc-chHH-HHHhhCCCCCCcee----ecCCCCCcc
Q 011488          421 FSETQLMDCARLLVYFHSKASEN-RLQV-VHKKYARTQRGSVS----LLPPAKSLL  470 (484)
Q Consensus       421 ys~~eL~~c~~~L~~l~~~a~~s-~l~a-I~kKYS~~~~~~VA----~~pp~~~l~  470 (484)
                      |+..++.+|.+.+..++.....+ .+.. +++||+++.++.++    .++.+....
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ky~~~~~~~~~~~~~~~~~~~~~~  384 (391)
T KOG0653|consen  329 YSESYLFECARSLSALSLSSLQNPSLRASVLNKYNSSKFLPASPHVWILEKITSSA  384 (391)
T ss_pred             CCcHHHHHHHHHHHHHHHHhcccchhHHHHHHHhcccccchhhhhcceeccccccc
Confidence            99999999999999876665544 4554 99999999999999    455544433

>COG5024 Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0654 consensus G2/Mitotic-specific cyclin A [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0655 consensus G1/S-specific cyclin E [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0656 consensus G1/S-specific cyclin D [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>TIGR00569 ccl1 cyclin ccl1 Back     alignment and domain information
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0835 consensus Cyclin L [General function prediction only] Back     alignment and domain information
>KOG0794 consensus CDK8 kinase-activating protein cyclin C [Transcription] Back     alignment and domain information
>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>KOG2496 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG1597 consensus Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG4164 consensus Cyclin ik3-1/CABLES [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1598 consensus Transcription initiation factor TFIIIB, Brf1 subunit [Transcription] Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG1674 consensus Cyclin [General function prediction only] Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>KOG1675 consensus Predicted cyclin [General function prediction only] Back     alignment and domain information
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query484
3qhr_B261 Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic 3e-42
4i3z_B257 Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNES 3e-42
4ii5_B258 Structure Of Pcdk2/cyclina Bound To Adp And 1 Magne 3e-42
4bco_B262 Structure Of Cdk2 In Complex With Cyclin A And A 2- 1e-41
1vyw_B265 Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 1e-41
2g9x_B262 Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN 2e-41
1vin_A268 Bovine Cyclin A3 Length = 268 2e-41
1fin_B260 Cyclin A-Cyclin-Dependent Kinase 2 Complex Length = 2e-41
2x1n_B261 Truncation And Optimisation Of Peptide Inhibitors O 2e-41
1jst_B258 Phosphorylated Cyclin-Dependent Kinase-2 Bound To C 2e-41
1ogu_B260 Structure Of Human Thr160-phospho Cdk2/cyclin A Com 2e-41
1qmz_B259 Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Com 2e-41
3f5x_B256 Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Boun 3e-41
3dog_B264 Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN 3e-41
3ddq_B269 Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN 3e-41
3ddp_B268 Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN 3e-41
3bht_B262 Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN 3e-41
1e9h_B261 Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex 3e-41
4bcq_B262 Structure Of Cdk2 In Complex With Cyclin A And A 2- 8e-41
4bcq_D262 Structure Of Cdk2 In Complex With Cyclin A And A 2- 2e-40
2jgz_B260 Crystal Structure Of Phospho-Cdk2 In Complex With C 2e-39
2b9r_A269 Crystal Structure Of Human Cyclin B1 Length = 269 1e-38
1w98_B283 The Structural Basis Of Cdk2 Activation By Cyclin E 1e-17
3g33_B306 Crystal Structure Of Cdk4CYCLIN D3 Length = 306 2e-15
2w9z_A257 Crystal Structure Of Cdk4 In Complex With A D-Type 7e-12
2w96_A271 Crystal Structure Of Cdk4 In Complex With A D-Type 8e-12
1jow_A254 Crystal Structure Of A Complex Of Human Cdk6 And A 2e-11
1bu2_A229 X-Ray Structure Of A Viral Cyclin From Herpesvirus 2e-11
1g3n_C257 Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Com 6e-08
>pdb|3QHR|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic Length = 261 Back     alignment and structure 
Iteration: 1

 Score =  169 bits (429), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 101/255 (39%), Positives = 153/255 (60%), Gaps = 4/255 (1%)
Query: 218 EYVEDIYKFYKLVENESRP-CSYIHTQTEITERMRAILVDWLIDVHQEFELSQETLYLTI 276
           +Y EDI+ + + +E + +P   Y+  Q +IT  MRAILVDWL++V +E++L  ETL+L +
Sbjct: 6   DYQEDIHTYLREMEVKCKPKVGYMKRQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 65
Query: 277 NIIDRFLSVKVVSRRELQLVGMGAMLIASKYEEIWAPEVNDLVRIADNAYSHPEVLAMEK 336
           N IDRFLS   V R +LQLVG  AML+ASK+EEI+ PEV + V I D+ YS  +VL ME 
Sbjct: 66  NYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYSKKQVLRMEH 125
Query: 337 TILGKLEWTLTVPTYYVFLVR-FIKASIPDQDMENTVYFLAELGMMHYDT-LMFSPSMVA 394
            +L  L + L  PT   FL + F+     +  +E+   FL EL ++  D  L + PS++A
Sbjct: 126 LVLKVLAFDLAAPTVNQFLTQYFLHLQPANCKVESLAMFLGELSLIDADPYLKYLPSLIA 185
Query: 395 ASAVYAARCTLNRSPAWTDTLRFHTGFSETQLMDCARLLVYFHSKASENRLQVVHKKYAR 454
            +A + A  T+    +W ++L   TG++   L  C   L   + KA ++  Q + +KY  
Sbjct: 186 GAAFHLALYTVTGQ-SWPESLAQQTGYTLESLKPCLVDLHQTYLKAPQHAQQSIREKYKH 244
Query: 455 TQRGSVSLLPPAKSL 469
           ++  SVSLL P ++L
Sbjct: 245 SKYHSVSLLNPPETL 259
>pdb|4I3Z|B Chain B, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM IONS Length = 257 Back     alignment and structure
>pdb|4II5|B Chain B, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium Ion Length = 258 Back     alignment and structure
>pdb|4BCO|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 262 Back     alignment and structure
>pdb|1VYW|B Chain B, Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 265 Back     alignment and structure
>pdb|2G9X|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Nu6271 Length = 262 Back     alignment and structure
>pdb|1VIN|A Chain A, Bovine Cyclin A3 Length = 268 Back     alignment and structure
>pdb|1FIN|B Chain B, Cyclin A-Cyclin-Dependent Kinase 2 Complex Length = 260 Back     alignment and structure
>pdb|2X1N|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2, Cyclin A Through Structure Guided Design Length = 261 Back     alignment and structure
>pdb|1JST|B Chain B, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A Length = 258 Back     alignment and structure
>pdb|1OGU|B Chain B, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed With A 2-arylamino-4-cyclohexylmethyl-5-nitroso-6- aminopyrimidine Inhibitor Length = 260 Back     alignment and structure
>pdb|1QMZ|B Chain B, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex Length = 259 Back     alignment and structure
>pdb|3F5X|B Chain B, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At Its Active Site Length = 256 Back     alignment and structure
>pdb|3DOG|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN Complex With The Inhibitor N-&-N1 Length = 264 Back     alignment and structure
>pdb|3DDQ|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX With The Inhibitor Roscovitine Length = 269 Back     alignment and structure
>pdb|3DDP|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX With The Inhibitor Cr8 Length = 268 Back     alignment and structure
>pdb|3BHT|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Meriolin 3 Length = 262 Back     alignment and structure
>pdb|1E9H|B Chain B, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With The Inhibitor Indirubin-5-Sulphonate Bound Length = 261 Back     alignment and structure
>pdb|4BCQ|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 262 Back     alignment and structure
>pdb|4BCQ|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 262 Back     alignment and structure
>pdb|2JGZ|B Chain B, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B Length = 260 Back     alignment and structure
>pdb|2B9R|A Chain A, Crystal Structure Of Human Cyclin B1 Length = 269 Back     alignment and structure
>pdb|1W98|B Chain B, The Structural Basis Of Cdk2 Activation By Cyclin E Length = 283 Back     alignment and structure
>pdb|3G33|B Chain B, Crystal Structure Of Cdk4CYCLIN D3 Length = 306 Back     alignment and structure
>pdb|2W9Z|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 257 Back     alignment and structure
>pdb|2W96|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 271 Back     alignment and structure
>pdb|1JOW|A Chain A, Crystal Structure Of A Complex Of Human Cdk6 And A Viral Cyclin Length = 254 Back     alignment and structure
>pdb|1BU2|A Chain A, X-Ray Structure Of A Viral Cyclin From Herpesvirus Saimiri Length = 229 Back     alignment and structure
>pdb|1G3N|C Chain C, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex Length = 257 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query484
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 1e-125
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 1e-124
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 1e-111
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 1e-109
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 1e-107
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 1e-107
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 2e-99
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 3e-93
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 1e-26
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 2e-17
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 9e-15
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 1e-13
2ivx_A257 Cyclin-T2; transcription regulation, cell division 8e-13
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 1e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-12
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Length = 260 Back     alignment and structure
 Score =  364 bits (936), Expect = e-125
 Identities = 98/256 (38%), Positives = 150/256 (58%), Gaps = 4/256 (1%)

Query: 217 VEYVEDIYKFYKLVENESRP-CSYIHTQTEITERMRAILVDWLIDVHQEFELSQETLYLT 275
            +Y EDI+ + + +E + +P   Y+  Q +IT  MRAILVDWL++V +E++L  ETL+L 
Sbjct: 4   PDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLA 63

Query: 276 INIIDRFLSVKVVSRRELQLVGMGAMLIASKYEEIWAPEVNDLVRIADNAYSHPEVLAME 335
           +N IDRFLS   V R +LQLVG  AML+ASK+EEI+ PEV + V I D+ Y+  +VL ME
Sbjct: 64  VNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRME 123

Query: 336 KTILGKLEWTLTVPTYYVFLVRFI-KASIPDQDMENTVYFLAELGMMHYDT-LMFSPSMV 393
             +L  L + L  PT   FL ++       +  +E+   FL EL ++  D  L + PS++
Sbjct: 124 HLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVI 183

Query: 394 AASAVYAARCTLNRSPAWTDTLRFHTGFSETQLMDCARLLVYFHSKASENRLQVVHKKYA 453
           A +A + A  T+     W ++L   TG++   L  C   L   + KA ++  Q + +KY 
Sbjct: 184 AGAAFHLALYTVTGQS-WPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREKYK 242

Query: 454 RTQRGSVSLLPPAKSL 469
            ++   VSLL P ++L
Sbjct: 243 NSKYHGVSLLNPPETL 258
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Length = 269 Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 283 Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 306 Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Length = 254 Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Length = 271 Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Length = 257 Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Length = 252 Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 258 Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Length = 235 Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Length = 358 Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Length = 323 Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Length = 257 Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 285 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query484
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 100.0
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 100.0
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 100.0
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 100.0
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 100.0
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 100.0
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 100.0
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 100.0
2ivx_A257 Cyclin-T2; transcription regulation, cell division 100.0
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 100.0
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 100.0
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 100.0
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 100.0
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 100.0
1c9b_A207 General transcription factor IIB; protein-DNA comp 99.95
1ais_B200 TFB TFIIB, protein (transcription initiation facto 99.91
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 99.77
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 99.4
2pmi_B293 PHO85 cyclin PHO80, aminoglycoside anti; cyclin-de 98.3
1ais_B200 TFB TFIIB, protein (transcription initiation facto 96.72
1c9b_A207 General transcription factor IIB; protein-DNA comp 95.29
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 91.33
2ivx_A257 Cyclin-T2; transcription regulation, cell division 88.82
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 88.35
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 88.22
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 87.72
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 87.31
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 85.36
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 85.26
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 84.52
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 84.36
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 84.17
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 83.28
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 83.16
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 80.04
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
Probab=100.00  E-value=9.7e-57  Score=443.56  Aligned_cols=254  Identities=39%  Similarity=0.628  Sum_probs=244.1

Q ss_pred             ccccHHHHHHHHHHHHhhcCC-CCccCcCccccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcccccccchhH
Q 011488          216 GVEYVEDIYKFYKLVENESRP-CSYIHTQTEITERMRAILVDWLIDVHQEFELSQETLYLTINIIDRFLSVKVVSRRELQ  294 (484)
Q Consensus       216 ~~eY~~DIy~~l~~~E~e~~~-~dyl~~Q~eIt~~mR~~LVdWLieV~~~f~L~~eTl~LAV~llDRfLs~~~V~~~~LQ  294 (484)
                      |.||++|||.||+..|..+.| ++||..|++|++.||.+++|||+++|..|+|+++|+|+||+|||||++...+.+.++|
T Consensus         3 ~~eY~~di~~~l~~~E~~~~p~~~y~~~q~~i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lq   82 (260)
T 2cch_B            3 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQ   82 (260)
T ss_dssp             CCTTHHHHHHHHHHHHHHTCCCTTGGGGCSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_pred             hHhHHHHHHHHHHHHHhhcCCCchhhhcCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHHHh
Confidence            789999999999999999887 6999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhccccCCCHHHHHHHhccCCCHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHhcCCCc-hhHHHHH
Q 011488          295 LVGMGAMLIASKYEEIWAPEVNDLVRIADNAYSHPEVLAMEKTILGKLEWTLTVPTYYVFLVRFIKASIPDQ-DMENTVY  373 (484)
Q Consensus       295 LvgiaCL~IAsK~EE~~~P~l~dlv~isd~~yt~~~Il~mE~~IL~~L~w~L~~PTp~~FL~~fl~~~~~d~-el~~lA~  373 (484)
                      |+|+||||||||+||.++|+++||+.++++.|++++|++||+.||++|+|+++.|||++||.+|++....+. ++..+++
T Consensus        83 lv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~~~~~a~  162 (260)
T 2cch_B           83 LVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAM  162 (260)
T ss_dssp             HHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999877554 8899999


Q ss_pred             HHHHHHhcccc-ccCCcHHHHHHHHHHHHHHHhCCCCCChHHHHhhhCCCHHHHHHHHHHHHHHHhhcCccchHHHHHhh
Q 011488          374 FLAELGMMHYD-TLMFSPSMVAASAVYAARCTLNRSPAWTDTLRFHTGFSETQLMDCARLLVYFHSKASENRLQVVHKKY  452 (484)
Q Consensus       374 yL~ELsL~d~~-~l~~~PS~IAAAal~lA~~~l~~~p~W~~~L~~~tgys~~eL~~c~~~L~~l~~~a~~s~l~aI~kKY  452 (484)
                      |+++++++|+. ++.|+||.||+|||++|++.++. +.|...|.+++||++++|.+|++.|..++.....+++++|++||
T Consensus       163 ~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~-~~w~~~l~~~~g~~~~~i~~~~~~l~~~~~~~~~~~~~~i~~Ky  241 (260)
T 2cch_B          163 FLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTG-QSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREKY  241 (260)
T ss_dssp             HHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHS-CCSCHHHHHHHCCCHHHHHHHHHHHHHHHHHGGGSSCCHHHHHH
T ss_pred             HHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCC-CcchHHHHHHhCcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence            99999999999 99999999999999999999876 68999999999999999999999999999988888999999999


Q ss_pred             CCCCCCceeecCCCCCcc
Q 011488          453 ARTQRGSVSLLPPAKSLL  470 (484)
Q Consensus       453 S~~~~~~VA~~pp~~~l~  470 (484)
                      ++++|+.||.+||++.|.
T Consensus       242 ~~~~~~~vs~~~~~~~~~  259 (260)
T 2cch_B          242 KNSKYHGVSLLNPPETLN  259 (260)
T ss_dssp             TSGGGTTGGGSCCCSCCC
T ss_pred             CcccccceeCCCCcccCC
Confidence            999999999999998763
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B* Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 484
d2cchb1128 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [T 2e-47
d1w98b2140 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human 8e-47
d1f5qb1141 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesviru 3e-46
d1bu2a1127 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saim 2e-45
d1g3nc1132 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma 2e-44
d2cchb2124 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [T 1e-38
d2i53a1144 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) 9e-33
d1jkwa1151 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo s 7e-26
d2ivxa1143 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) 2e-24
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Length = 128 Back     information, alignment and structure

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Cyclin A
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  158 bits (400), Expect = 2e-47
 Identities = 61/127 (48%), Positives = 86/127 (67%), Gaps = 1/127 (0%)

Query: 222 DIYKFYKLVENESRP-CSYIHTQTEITERMRAILVDWLIDVHQEFELSQETLYLTINIID 280
           DI+ + + +E + +P   Y+  Q +IT  MRAILVDWL++V +E++L  ETL+L +N ID
Sbjct: 1   DIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYID 60

Query: 281 RFLSVKVVSRRELQLVGMGAMLIASKYEEIWAPEVNDLVRIADNAYSHPEVLAMEKTILG 340
           RFLS   V R +LQLVG  AML+ASK+EEI+ PEV + V I D+ Y+  +VL ME  +L 
Sbjct: 61  RFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLK 120

Query: 341 KLEWTLT 347
            L + L 
Sbjct: 121 VLTFDLA 127
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Length = 140 Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Length = 141 Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Length = 127 Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Length = 132 Back     information, alignment and structure
>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Length = 124 Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Length = 144 Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Length = 151 Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Length = 143 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query484
d1w98b2140 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 100.0
d2cchb1128 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1g3nc1132 Viral cyclin {Kaposi's sarcoma-associated herpesvi 99.97
d1bu2a1127 Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} 99.97
d1f5qb1141 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 99.96
d2cchb2124 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 99.91
d1jkwa1151 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 99.8
d2i53a1144 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 99.8
d2ivxa1143 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 99.74
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 98.49
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 98.32
d1w98b1130 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 98.13
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 97.93
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 97.92
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 97.8
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 97.77
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 97.57
d1jkwa2126 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 97.15
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 97.03
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 97.02
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 96.87
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 95.3
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 91.92
d1f5qb1141 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 88.28
d2cchb1128 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 88.12
d1bu2a1127 Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} 86.93
d1g3nc1132 Viral cyclin {Kaposi's sarcoma-associated herpesvi 81.87
d1w98b2140 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 80.75
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: G1/S-specific cyclin-E1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.9e-34  Score=253.78  Aligned_cols=135  Identities=31%  Similarity=0.605  Sum_probs=128.1

Q ss_pred             CccccccHHHHHHHHHHHHhhcCC-CCccCcCccccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccc-cccc
Q 011488          213 DLAGVEYVEDIYKFYKLVENESRP-CSYIHTQTEITERMRAILVDWLIDVHQEFELSQETLYLTINIIDRFLSVK-VVSR  290 (484)
Q Consensus       213 ~l~~~eY~~DIy~~l~~~E~e~~~-~dyl~~Q~eIt~~mR~~LVdWLieV~~~f~L~~eTl~LAV~llDRfLs~~-~V~~  290 (484)
                      |..+.+|.+|||.+|...|..+.+ .+|++.|++++++||.++||||++++..|+|+++|+|+||+||||||+.. .+.+
T Consensus         4 p~~~~~~~~dI~~~l~~~E~~~~~~~~~l~~q~~i~~~~R~~lidW~~~v~~~~~l~~et~~lAv~llDryl~~~~~v~~   83 (140)
T d1w98b2           4 PVLSWANREEVWKIMLNKEKTYLRDQHFLEQHPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVK   83 (140)
T ss_dssp             CCCSSSCHHHHHHHHHHHTTTSCCCTTGGGGCTTCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCCG
T ss_pred             ccccccCHHHHHHHHHHHHHhhCCChHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhccccccH
Confidence            556788999999999999988765 68999999999999999999999999999999999999999999999854 6899


Q ss_pred             chhHHHHHHHHHHHhhhccccCCCHHHHHHHhccCCCHHHHHHHHHHHHHHcCCccc
Q 011488          291 RELQLVGMGAMLIASKYEEIWAPEVNDLVRIADNAYSHPEVLAMEKTILGKLEWTLT  347 (484)
Q Consensus       291 ~~LQLvgiaCL~IAsK~EE~~~P~l~dlv~isd~~yt~~~Il~mE~~IL~~L~w~L~  347 (484)
                      +++||+|+||||||||+||..+|.+.+|+.++++.|+.++|++||+.||++|+|+|+
T Consensus        84 ~~lqL~a~acL~IAsK~ee~~~~~~~~l~~~~~~~~t~~ei~~mE~~IL~~L~~~Ln  140 (140)
T d1w98b2          84 TLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLS  140 (140)
T ss_dssp             GGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHHHHHHHHHHHTTTCCC
T ss_pred             HHHhHHHHHHHHHHHHHcccCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHCCCcCC
Confidence            999999999999999999999999999999999999999999999999999999985
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure
>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w98b1 a.74.1.1 (B:228-357) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1jkwa2 a.74.1.1 (A:162-287) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Back     information, alignment and structure
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure