Citrus Sinensis ID: 011491

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480----
Protein Sequence
MAATMTPYQKLNLSHCFITKSCDFVLFWRPPSQGRTSFSSSAEVSSKKLQLVTASGSTSNNALPVSQSVPPITASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLNGNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLEPYGICEVARTGRVALVRESGVDSTYLRGYPLPL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccEEEccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccEEEEEEEEEccccHHHHHHHHHHcccccccEEEEEccccccEEEEEEEcccHHHHHHHHHHHccccEEEEEEccccccEEEEEEEEEEEcccccHHHHHHHHHHcccEEEEEcccEEEEEEEccHHHHHHHHHHHccccEEEEEEEEEEEEEccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEccccHHHHHHHHHcccccccEEEEEEccccccccEEEEEEEccccHHHHHHHHHHccccEEEEEEccccccEEEEEEEEEEEcccccHHHHHHHHHHcccEEEEEcccEEEEEEEccHHHHHHHHHHHccccEEEEEEEcHHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccEEEEEEEccccHHHHHHHHHHHHccccEEEEEEcccccccEEEEEEcccHHHHHHHHHHHHHHHHHEEEEcccccccHHHHHEEEEEcccHHHHHHHHHHHHHHHcEEEEccccEEEEEEEccHHHHHHHHHHHcHcccEEEEEcccEEEEEccccccHHHHcccccccccHHHcccHHcccccccccccccccccccccccEEEEccccccccccEccccccccccccccccccEEEEEEEccccHHHHHHHHHHHHccccEcEEEEccccccccEEEEEEEcccHHHHHHHHHHHHHHHHHEEEEEcccccHHHHHHEEEEEcccHHHHHHHHHHHHHHHcEEEEccccEEEEEEEccHHHHHHHHHHHcHcccEEEEEccEEEEEccccccHHHHHcccccc
Coil and Loop (DISEMBL)
maatmtpyqklnlshcfitkscdfvlfwrppsqgrtsfsssaevssKKLQLVTAsgstsnnalpvsqsvppitaskvkrhtisvfvgdesgiINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKvedisnephVERELMLIKLngdtstwpeIMWLVDIFRAKVvdisehaltievtgdpgkMVAVQRNLSKFGIKELARTGKIALrreklgdtapfwnfsaasypdleekkrtgifipetnqslngnanvdtssrgdvypvepyddfsanqvldahwgilydedpsglrshtlsmlvnntpgvlNIVTGVISrrgyniqslavgpaekeglscittvvpgtdesIGKLVQLLHKLIDlhevqdithlpfAERELILIKIAVNTAARRDVLDIAKIFRAravdvsdhtiTLELTGDLNKIIALQRLlepygicevarTGRVALVREsgvdstylrgyplpl
Flexible Loop (DISEMBL)
maatmtpyqklnlshCFITKSCDFVLFWRPPSQGRTsfsssaevsSKKLQLVTASgstsnnalpvsqsvppitaskvKRHTIsvfvgdesgiiNRIAGVFARRGYNIESlavglnvdKALFTIVVSGTERVLRQVVEQLNKLVnvikvedisnephvERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHAltievtgdpgkmVAVQRNLSKFGIKELARTGKIAlrreklgdtapfwnfsaasypdleEKKRTGIFipetnqslngnanvdTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLavgpaekegLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFAERELILIKIAvntaarrdVLDIAKIFraravdvsdhtitleltgdlNKIIALQRLLEPYGICEVARTGRVALvresgvdstylrgyplpl
Low Complexity Region (SEG)
MAATMTPYQKLNLSHCFITKSCDFVLFWRPPSQGRTsfsssaevssKKLQLVTASGSTSNNALPVSQSVPPITASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLNGNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLEPYGICEVARTGRVALVRESGVDSTYLRGYPLPL
Disordered region (IsUnstruct)
*******YQKLNLSHCFITKSCDFVLFWR***********************************************VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLE***RTGIFI*******************DVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLEPYGICEVARTGRVALVRESGVDSTYLRG*****
Disordered Region (DISOPRED)
******P*QKLNLS******************************************************************TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALR******************************************************VEPYDDFSANQVLDAHWGI*Y*****GLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLEPYGICEVARTGRVALVRES******L*GYPL**
Disordered Region (DISEMBL)
MAATMTPYQKLNLSHCFITKSCDFVLFWRPPSQ*****************************LPVSQSVPPITASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLNGNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLEPYGICEVARTGRVALVRESGVDSTYLRGYPLPL
Disordered Region (DISPRO)
****MTPYQKLNLSHCFITKSCDFVLFWRPPS***************K**L*T*S********************KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLEEKK***********************RGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLEPYGICEVARTGRVALVRESGVDSTYLRGYPLPL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAATMTPYQKLNLSHCFITKSCDFVLFWRPPSQGRTSFSSSAEVSSKKLQLVTASGSTSNNALPVSQSVPPITASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLNGNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLEPYGICEVARTGRVALVRESGVDSTYLRGYPLPL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	484	2.2.26 [Sep-21-2011]
Q9FFF4	477	Acetolactate synthase sma	yes	no	0.929	0.943	0.725	0.0
Q93YZ7	491	Acetolactate synthase sma	no	no	0.861	0.849	0.718	0.0
Q9SMC2	449	Acetolactate synthase sma	N/A	no	0.760	0.819	0.772	1e-165
Q55141	172	Acetolactate synthase sma	N/A	no	0.318	0.895	0.589	3e-45
Q9TLY1	172	Acetolactate synthase sma	N/A	no	0.316	0.889	0.567	1e-44
Q9MS98	181	Acetolactate synthase sma	N/A	no	0.332	0.889	0.521	6e-44
O78451	169	Acetolactate synthase sma	yes	no	0.314	0.899	0.594	8e-44
P51230	174	Acetolactate synthase sma	N/A	no	0.322	0.896	0.506	2e-42
Q1XDQ7	174	Acetolactate synthase sma	N/A	no	0.338	0.942	0.530	6e-42
P65161	168	Putative acetolactate syn	yes	no	0.318	0.916	0.467	4e-34

>sp|Q9FFF4|ILVH1_ARATH Acetolactate synthase small subunit 1, chloroplastic OS=Arabidopsis thaliana GN=VAT1 PE=1 SV=1

 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/455 (72%), Positives = 381/455 (83%), Gaps = 5/455 (1%)

Query: 31  PSQGRTSFSSSAEVSSKKLQLVTA-SGSTSNNALPVSQSVPPITASKVKRHTISVFVGDE 89
           P++   S   +  +  +K++  T  S ++++ A+  +QSV P    +V+RHTISVFVGDE
Sbjct: 27  PAKTPNSLQVNQIIDGRKMRNATVLSAASTDKAITTAQSVAPTACDRVRRHTISVFVGDE 86

Query: 90  SGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVE 149
           SGIINRIAGVFARRGYNIESLAVGLN DKALFTIVV GT++VL+QVVEQLNKLVNVIKVE
Sbjct: 87  SGIINRIAGVFARRGYNIESLAVGLNEDKALFTIVVLGTDKVLQQVVEQLNKLVNVIKVE 146

Query: 150 DISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAV 209
           D+S EPHVERELMLIKLN D ST  EIMWLVDIFRAK+VD SE +LTIEVTGDPGKMVA+
Sbjct: 147 DLSKEPHVERELMLIKLNADPSTRSEIMWLVDIFRAKIVDTSEQSLTIEVTGDPGKMVAL 206

Query: 210 QRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLN 269
             NL KFGIKE+ARTGKIALRREK+G+TAPFW FSAASYP L ++        +T  +L 
Sbjct: 207 TTNLEKFGIKEIARTGKIALRREKMGETAPFWRFSAASYPHLVKESSHETVAEKTKLALT 266

Query: 270 GNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLN 329
           GN N   SS GDVYPVEPY+DF    VLDAHWG++YDED SGLRSHTLS+LV N PGVLN
Sbjct: 267 GNGNA--SSGGDVYPVEPYNDFKP--VLDAHWGMVYDEDSSGLRSHTLSLLVANVPGVLN 322

Query: 330 IVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDIT 389
           ++TG ISRRGYNIQSLAVGPAEKEGLS ITTV+PGTDE+I KLV+ L KLIDL E+Q+IT
Sbjct: 323 LITGAISRRGYNIQSLAVGPAEKEGLSRITTVIPGTDENIDKLVRQLQKLIDLQEIQNIT 382

Query: 390 HLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRL 449
           H+PFAEREL+LIK+A +T+ARRDVLDIA++FRA+A+DVSDHTITLE+TGDL K+ ALQ  
Sbjct: 383 HMPFAERELMLIKVAADTSARRDVLDIAQVFRAKAIDVSDHTITLEVTGDLRKMSALQTQ 442

Query: 450 LEPYGICEVARTGRVALVRESGVDSTYLRGYPLPL 484
           LE YGICEVARTGRVALVRESGVDSTYLRGY LPL
Sbjct: 443 LEAYGICEVARTGRVALVRESGVDSTYLRGYSLPL 477

Regulatory subunit of acetohydroxy-acid synthase. Involved in the feed-back inhibition by branched-chain amino acids but not in herbicide tolerance.
Arabidopsis thaliana (taxid: 3702)

>sp|Q93YZ7|ILVH2_ARATH Acetolactate synthase small subunit 2, chloroplastic OS=Arabidopsis thaliana GN=At2g31810 PE=1 SV=1

 Score =  641 bits (1654), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/437 (71%), Positives = 364/437 (83%), Gaps = 20/437 (4%)

Query: 56  GSTSNNALPVSQSVPPITASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLN 115
           G  S+ +   + S  P   SKV++HTISVFVGDESG+INRIAGVFARRGYNIESLAVGLN
Sbjct: 65  GKISDASFSEASSATP--KSKVRKHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLN 122

Query: 116 VDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPE 175
            DKALFTIVV GTERVL+QV+EQL KLVNV+KVEDIS+EP VERELML+K+N    +  E
Sbjct: 123 RDKALFTIVVCGTERVLQQVIEQLQKLVNVLKVEDISSEPQVERELMLVKVNAHPESRAE 182

Query: 176 IMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLG 235
           IMWLVD FRA+VVDI+EHALTIEVTGDPGKM+AV+RNL KF I+E+ RTGKIALRREK+G
Sbjct: 183 IMWLVDTFRARVVDIAEHALTIEVTGDPGKMIAVERNLKKFQIREIVRTGKIALRREKMG 242

Query: 236 DTAPFWNFSAASYPDLEEK--------KRTGIFIPETNQSLNGNANVDTSSRGDVYPVEP 287
            TAPFW FSAASYPDL+E+         + G  +P+           +TS+ GDVYPVEP
Sbjct: 243 ATAPFWRFSAASYPDLKEQAPVSVLRSSKKGAIVPQK----------ETSAGGDVYPVEP 292

Query: 288 YDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAV 347
           + D   +++LDAHWG+L DED SGLRSHTLS+LVN+ PGVLNIVTGV +RRGYNIQSLAV
Sbjct: 293 FFDPKVHRILDAHWGLLTDEDTSGLRSHTLSLLVNDIPGVLNIVTGVFARRGYNIQSLAV 352

Query: 348 GPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFAERELILIKIAVNT 407
           G AE +G+S ITTV+P TDES+ KLVQ L+KL+D+HEV D+THLPF+EREL+LIKIAVN 
Sbjct: 353 GHAETKGISRITTVIPATDESVSKLVQQLYKLVDVHEVHDLTHLPFSERELMLIKIAVNA 412

Query: 408 AARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLEPYGICEVARTGRVALV 467
           AARRDVLDIA IFRA+AVDVSDHTITL+LTGDL+K++ALQRLLEPYGICEVARTGRVAL 
Sbjct: 413 AARRDVLDIASIFRAKAVDVSDHTITLQLTGDLDKMVALQRLLEPYGICEVARTGRVALA 472

Query: 468 RESGVDSTYLRGYPLPL 484
           RESGVDS YLRGY  PL
Sbjct: 473 RESGVDSKYLRGYSFPL 489

Regulatory subunit of acetohydroxy-acid synthase. Involved in the feed-back inhibition by branched-chain amino acids. Contains 2 repeats, each of them being able to activate partially the catalytic subunit. The enzyme reconstituted with the first repeat is inhibited by leucine, but not by valine or isoleucine and the enzyme reconstituted with the second repeat is not inhibited by any branched-chain amino acid.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SMC2|ILVH_NICPL Acetolactate synthase small subunit 1, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1

 Score =  581 bits (1498), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 286/370 (77%), Positives = 323/370 (87%), Gaps = 2/370 (0%)

Query: 92  IINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI 151
           +INRIAGVFARRGYNIESLAVGLN DKALFTIVVSGTERVL+QV+EQL KLVNVIKVED+
Sbjct: 37  MINRIAGVFARRGYNIESLAVGLNKDKALFTIVVSGTERVLQQVMEQLQKLVNVIKVEDL 96

Query: 152 SNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQR 211
           S EP VERELMLIK++ D     E+MWLVD+FRAK+VDIS+ +LTIEVTGDPGKMVAVQR
Sbjct: 97  SKEPQVERELMLIKISADPKYRAEVMWLVDVFRAKIVDISDQSLTIEVTGDPGKMVAVQR 156

Query: 212 NLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLNGN 271
           NLSKFGI+E+ARTGKIALRREK+G++APFW FSAASYPDLE     G       ++ NG 
Sbjct: 157 NLSKFGIREIARTGKIALRREKMGESAPFWRFSAASYPDLEGAMSAGTISRTIKRTPNGE 216

Query: 272 ANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIV 331
           +   + + GDVYPVE  D+   +QVLDAHWG+L DED SGLRSHTLSMLVN+TPGVLNIV
Sbjct: 217 SM--SMAEGDVYPVETDDNSGVSQVLDAHWGVLNDEDTSGLRSHTLSMLVNDTPGVLNIV 274

Query: 332 TGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHL 391
           TGV +RRGYNIQSLAVG AE EGLS ITTVVPGTDES+ KLVQ L+KL+D+HEV+DITHL
Sbjct: 275 TGVFARRGYNIQSLAVGHAEVEGLSRITTVVPGTDESVSKLVQQLYKLVDIHEVRDITHL 334

Query: 392 PFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLE 451
           PFAEREL+LIKIAVN AARR+VLDIA IFRA+AVDVSDHTITLELTGDL+K++ LQRLLE
Sbjct: 335 PFAERELMLIKIAVNAAARRNVLDIASIFRAKAVDVSDHTITLELTGDLHKMVRLQRLLE 394

Query: 452 PYGICEVART 461
           PYGICEVART
Sbjct: 395 PYGICEVART 404

Regulatory subunit of acetohydroxy-acid synthase. Probably involved in feedback inhibition by branched-chain amino acids. Not involved in herbicide tolerance.

Nicotiana plumbaginifolia (taxid: 4092)

>sp|Q55141|ILVH_SYNY3 Acetolactate synthase small subunit OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=ilvH PE=3 SV=2

 Score =  183 bits (464), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 92/156 (58%), Positives = 120/156 (76%), Gaps = 2/156 (1%)

Query: 79  RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGL--NVDKALFTIVVSGTERVLRQVV 136
           +HT+SV V DE+G++ RIAG+FARRG+NIESLAVG     D +  T+VV G E  + Q+ 
Sbjct: 2   KHTLSVLVEDEAGVLTRIAGLFARRGFNIESLAVGSAEQGDVSRITMVVPGDENTIEQLT 61

Query: 137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
           +QL KLVNVIKV+DI+  P VERELML+K++ +     E++ L  +FRA++VDISE  +T
Sbjct: 62  KQLYKLVNVIKVQDITETPCVERELMLVKVSANAPNRAEVIELAQVFRARIVDISEDTVT 121

Query: 197 IEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRRE 232
           IEV GDPGKMVA+ + L+KFGIKE+ARTGKIAL RE
Sbjct: 122 IEVVGDPGKMVAILQMLAKFGIKEVARTGKIALVRE 157

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 2

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 6

>sp|Q9TLY1|ILVH_CYACA Acetolactate synthase small subunit OS=Cyanidium caldarium GN=ilvH PE=3 SV=1

 Score =  181 bits (458), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 88/155 (56%), Positives = 123/155 (79%), Gaps = 2/155 (1%)

Query: 79  RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVV 136
           ++T+SV V DE+G++ RIAG+FARRG+NIESLAVG    K +   T+VV G +R + Q+ 
Sbjct: 2   KYTLSVLVEDEAGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRTVEQLT 61

Query: 137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
           +QL KLVN++KV++I+  P VEREL+L+K+N  TS+ PEI+ ++ +FRAKVVD+SE+ L 
Sbjct: 62  KQLYKLVNILKVDNITEIPCVERELILVKINASTSSRPEILSILQVFRAKVVDLSENLLV 121

Query: 197 IEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRR 231
           +E+TGDPGK+ A+Q+ L KFGI E+ARTGKIAL R
Sbjct: 122 LELTGDPGKVAAIQQLLQKFGIIEIARTGKIALTR 156

Cyanidium caldarium (taxid: 2771)

EC: 2

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 6

>sp|Q9MS98|ILVH_GALSU Acetolactate synthase small subunit OS=Galdieria sulphuraria GN=ilvH PE=3 SV=1

 Score =  179 bits (453), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 86/165 (52%), Positives = 124/165 (75%)

Query: 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLV 373
            HTLS+LV +  GVL  ++G+ +RRG+NI SLAVGPAEK G+S IT V+ G +  I ++ 
Sbjct: 2   KHTLSVLVEDESGVLTRISGLFARRGFNIDSLAVGPAEKAGISRITMVIRGDNRIIEQIT 61

Query: 374 QLLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTIT 433
           + L+KL+++ ++QDIT++P  EREL+LIK+      R ++L+IA IFRAR VD+S+  I 
Sbjct: 62  KHLYKLVNVLKIQDITNIPCVERELMLIKVKTGENKRNEILEIANIFRARVVDLSESFII 121

Query: 434 LELTGDLNKIIALQRLLEPYGICEVARTGRVALVRESGVDSTYLR 478
           LE+TGD  KI A+++LLE YGICE+ARTG++AL RES +++  LR
Sbjct: 122 LEITGDPGKIAAIEKLLEKYGICEIARTGKIALTRESKINTEILR 166

Galdieria sulphuraria (taxid: 130081)

EC: 2

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 6

>sp|O78451|ILVH_GUITH Acetolactate synthase small subunit OS=Guillardia theta GN=ilvH PE=3 SV=1

 Score =  178 bits (452), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 94/158 (59%), Positives = 120/158 (75%), Gaps = 6/158 (3%)

Query: 79  RHTISVFVGDESGIINRIAGVFARRGYNIESLAVG----LNVDKALFTIVVSGTERVLRQ 134
           +HT+SV V DESG++ RIAG+FARRG+NIESLAVG    L + +   T+VV   ER + Q
Sbjct: 2   KHTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPTEKLGISR--ITMVVPSDERTIEQ 59

Query: 135 VVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHA 194
           + +QL KLVN++KVEDI+N P VERELMLIKL   T    E + +++IFRAKVVD+SE  
Sbjct: 60  LTKQLYKLVNILKVEDITNLPTVERELMLIKLRVSTFERTEALDIINIFRAKVVDLSEDF 119

Query: 195 LTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRRE 232
           L IEVTGDPGK+VA+++ LSKF I E+ RTGKI+L RE
Sbjct: 120 LIIEVTGDPGKIVAIEQILSKFTISEIVRTGKISLVRE 157

Guillardia theta (taxid: 55529)

EC: 2

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 6

>sp|P51230|ILVH_PORPU Acetolactate synthase small subunit OS=Porphyra purpurea GN=ilvH PE=3 SV=1

 Score =  173 bits (439), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 83/164 (50%), Positives = 126/164 (76%)

Query: 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQ 374
           HTLS+LV +  GVL+ ++G+ +RRG+NI SLAVGPAE+ G+S IT VV G + +I +L +
Sbjct: 3   HTLSVLVQDEAGVLSRISGLFARRGFNIASLAVGPAEQIGVSRITMVVQGDNRTIEQLTK 62

Query: 375 LLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITL 434
            L+KL+++  VQD+T++P  EREL+LIKI VN+  R + L+I KIFRA  VD+++  I +
Sbjct: 63  QLYKLVNILNVQDVTNIPSVERELMLIKIQVNSQNRIEALEIVKIFRANVVDIAEDLIIV 122

Query: 435 ELTGDLNKIIALQRLLEPYGICEVARTGRVALVRESGVDSTYLR 478
           E+TGD  KI+A+++LL  +GI E+ARTG+++LVR S +++ YL+
Sbjct: 123 EVTGDPGKIVAIEQLLTKFGIIEIARTGKISLVRTSKINTEYLK 166

Porphyra purpurea (taxid: 2787)

EC: 2

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 6

>sp|Q1XDQ7|ILVH_PORYE Acetolactate synthase small subunit OS=Porphyra yezoensis GN=ilvH PE=3 SV=1

 Score =  172 bits (436), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 88/166 (53%), Positives = 122/166 (73%), Gaps = 2/166 (1%)

Query: 79  RHTISVFVGDESGIINRIAGVFARRGYNIESLAVG--LNVDKALFTIVVSGTERVLRQVV 136
           +HT+SV V DE+G+++RI+G+FARRG+NI SLAVG    +  +  T+VV G  R + Q+ 
Sbjct: 2   KHTLSVLVQDEAGVLSRISGLFARRGFNIASLAVGPAEQIGVSRITMVVQGDNRTIEQLT 61

Query: 137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
           +QL KLVN++ V+D++N P VERELMLIK+  ++ T  E + +V IFRAK+VDI+E  L 
Sbjct: 62  KQLYKLVNILNVQDVTNIPSVERELMLIKIQINSQTRTEALEIVRIFRAKIVDIAEDLLI 121

Query: 197 IEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLGDTAPFWN 242
           IEVTGDPGK+VA+++ L+KFGI E+ARTGKI L R    +T    N
Sbjct: 122 IEVTGDPGKIVAIEQLLTKFGIIEIARTGKILLVRTSKINTEYLKN 167

Porphyra yezoensis (taxid: 2788)

EC: 2

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 6

>sp|P65161|ILVH_MYCTU Putative acetolactate synthase small subunit OS=Mycobacterium tuberculosis GN=ilvH PE=1 SV=1

 Score =  146 bits (368), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 73/156 (46%), Positives = 110/156 (70%), Gaps = 2/156 (1%)

Query: 78  KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLN--VDKALFTIVVSGTERVLRQV 135
           K HT+SV V D+ G++ R+A +F+RRG+NIESLAVG     D++  TIVVS  +  L Q+
Sbjct: 4   KTHTLSVLVEDKPGVLARVAALFSRRGFNIESLAVGATECKDRSRMTIVVSAEDTPLEQI 63

Query: 136 VEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHAL 195
            +QLNKL+NVIK+ +  +E  V REL LIK+  D  +  +++  V++FRA V+D+S  +L
Sbjct: 64  TKQLNKLINVIKIVEQDDEHSVSRELALIKVQADAGSRSQVIEAVNLFRANVIDVSPESL 123

Query: 196 TIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRR 231
           T+E TG+ GK+ A+ R L  FGI+E+A++G ++L R
Sbjct: 124 TVEATGNRGKLEALLRVLEPFGIREIAQSGMVSLSR 159

Mycobacterium tuberculosis (taxid: 1773)

EC: 2

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	484
359495876	476	PREDICTED: uncharacterized protein LOC10	0.857	0.871	0.846	0.0
449442655	480	PREDICTED: uncharacterized protein LOC10	0.935	0.943	0.737	0.0
224098798	414	predicted protein [Populus trichocarpa]	0.842	0.985	0.818	0.0
224112371	414	predicted protein [Populus trichocarpa]	0.838	0.980	0.812	0.0
225434187	482	PREDICTED: uncharacterized protein LOC10	0.911	0.914	0.744	0.0
255577893	493	acetolactate synthase, putative [Ricinus	0.911	0.894	0.743	0.0
147792338	451	hypothetical protein VITISV_043824 [Viti	0.842	0.904	0.8	0.0
15237321	477	protein valine-tolerant 1 [Arabidopsis t	0.929	0.943	0.725	0.0
222423112	477	AT5G16290 [Arabidopsis thaliana]	0.929	0.943	0.723	0.0
297807659	476	hypothetical protein ARALYDRAFT_488480 [	0.929	0.945	0.721	0.0

>gi|359495876|ref|XP_002266924.2| PREDICTED: uncharacterized protein LOC100256605 [Vitis vinifera] gi|296083398|emb|CBI23353.3| unnamed protein product [Vitis vinifera]

 Score =  706 bits (1823), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/417 (84%), Positives = 372/417 (89%), Gaps = 2/417 (0%)

Query: 68  SVPPITASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSG 127
           S PPI  SKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLN DKALFTIVVSG
Sbjct: 62  SAPPIQRSKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNEDKALFTIVVSG 121

Query: 128 TERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKV 187
           TE VLRQVVEQLNKLVNV+KV+D+S EP VERELMLIKLN D S   EIMWLVDIFRAK+
Sbjct: 122 TETVLRQVVEQLNKLVNVLKVKDLSREPQVERELMLIKLNADPSKRAEIMWLVDIFRAKI 181

Query: 188 VDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAAS 247
           VDISEH+LTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREK+G+TAPFW FSAAS
Sbjct: 182 VDISEHSLTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKMGETAPFWRFSAAS 241

Query: 248 YPDLEEKKRTGIFIPETNQSLNGNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDE 307
           YPDLEE       +    + LNGN +  TS  GDVYPVEP++DFS N VLD HWG L DE
Sbjct: 242 YPDLEETIPVNALVRNVKRPLNGNPS--TSPGGDVYPVEPFNDFSVNPVLDPHWGALNDE 299

Query: 308 DPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDE 367
           D SGLRSHTLSMLVN+TPGVLNIVTGVISRR YNIQSLAVGPAE EG S ITTVVPGTDE
Sbjct: 300 DSSGLRSHTLSMLVNDTPGVLNIVTGVISRRSYNIQSLAVGPAEMEGRSHITTVVPGTDE 359

Query: 368 SIGKLVQLLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDV 427
           SI KLVQ L KLIDLHEV+DITH+PFAEREL+LIKIAVNTAARRDVLDIA IFRA+AVDV
Sbjct: 360 SISKLVQQLQKLIDLHEVRDITHMPFAERELMLIKIAVNTAARRDVLDIASIFRAKAVDV 419

Query: 428 SDHTITLELTGDLNKIIALQRLLEPYGICEVARTGRVALVRESGVDSTYLRGYPLPL 484
           SDHTITLELTGDLNK++ALQRLLEPYGICEVARTGRVALVRESGVDSTYLRGY LPL
Sbjct: 420 SDHTITLELTGDLNKMVALQRLLEPYGICEVARTGRVALVRESGVDSTYLRGYALPL 476

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442655|ref|XP_004139096.1| PREDICTED: uncharacterized protein LOC101208212 [Cucumis sativus]

 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/468 (73%), Positives = 393/468 (83%), Gaps = 15/468 (3%)

Query: 29  RPPSQG---RTSFSSSAEVSSKKLQ---------LVTASGSTSNNALPVSQSVPPITASK 76
           +PP      R  FS+S  V  +++Q         L  +S + ++NA+ V+ S  P   S 
Sbjct: 16  KPPYSALASRHFFSTSLIVKYQEVQKWNRFEFQRLQVSSAAVNDNAVTVTDSSRPSIRST 75

Query: 77  VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVV 136
           V RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLN DKALFTIVV+GTE VLRQVV
Sbjct: 76  VMRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNKDKALFTIVVTGTENVLRQVV 135

Query: 137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
           EQLNKLVNVIKVEDIS +P VEREL+L+KLN D+ST  EIMWLVDIFR K+VDISEH++T
Sbjct: 136 EQLNKLVNVIKVEDISRQPQVERELVLMKLNADSSTRAEIMWLVDIFRGKIVDISEHSVT 195

Query: 197 IEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLEEKKR 256
           IEVTGDPGK+VAV+RN SKFGI+ELARTGKIALRREK G+TAPFW FSAASYPDLE+ + 
Sbjct: 196 IEVTGDPGKLVAVERNFSKFGIRELARTGKIALRREKRGETAPFWRFSAASYPDLEDSRP 255

Query: 257 TGIFIPETNQSLNGNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHT 316
              F+ +  QSL G     ++S GDVYPVEPY+ F ++QVLDAHWG+LYDED SG +SHT
Sbjct: 256 INSFVEDAIQSLKGQV---STSTGDVYPVEPYESFHSDQVLDAHWGVLYDEDSSGHQSHT 312

Query: 317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLL 376
           LSMLVN+ PGVLN+VTG+ISRRGYNIQSLAVG AE+EGLS ITTV+PGTDESIGKLVQ L
Sbjct: 313 LSMLVNDYPGVLNVVTGIISRRGYNIQSLAVGHAEREGLSRITTVIPGTDESIGKLVQQL 372

Query: 377 HKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLEL 436
           HKLIDLHEV+D+THLPFAEREL+LIKIA N  ARRDVLDIA IFRA+AVDVS HTITL+L
Sbjct: 373 HKLIDLHEVRDLTHLPFAERELMLIKIAANATARRDVLDIADIFRAKAVDVSGHTITLQL 432

Query: 437 TGDLNKIIALQRLLEPYGICEVARTGRVALVRESGVDSTYLRGYPLPL 484
           TGDLNK++ALQRLLEP+GICEVARTGRVAL RESGVDS YLRGYPLP+
Sbjct: 433 TGDLNKMVALQRLLEPFGICEVARTGRVALERESGVDSAYLRGYPLPI 480

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098798|ref|XP_002311270.1| predicted protein [Populus trichocarpa] gi|222851090|gb|EEE88637.1| predicted protein [Populus trichocarpa]

 Score =  689 bits (1778), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/414 (81%), Positives = 372/414 (89%), Gaps = 6/414 (1%)

Query: 76  KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQV 135
           +++RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLN DKALFTIVV GTE+VLRQV
Sbjct: 1   RLQRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNKDKALFTIVVCGTEKVLRQV 60

Query: 136 VEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHAL 195
           VEQLNKLVNVIKV+DIS EP VERELMLIK N D ST  E+MWLVDIFRAK+VDISE++L
Sbjct: 61  VEQLNKLVNVIKVDDISREPQVERELMLIKFNADPSTRAEVMWLVDIFRAKIVDISENSL 120

Query: 196 TIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLEEKK 255
           TIEVTGDPGKM A+QRNLSKFGIKELARTGKIALRRE++G+TAPFWNFSAASYPDLE   
Sbjct: 121 TIEVTGDPGKMAAIQRNLSKFGIKELARTGKIALRRERMGETAPFWNFSAASYPDLERVP 180

Query: 256 RTGIFIPETNQSLNGNANVDTSS------RGDVYPVEPYDDFSANQVLDAHWGILYDEDP 309
                   + +++ GNAN+  +       +GDVYPVEPYDDF  N VLDAHWG+LYDED 
Sbjct: 181 SGVALARNSTKTVAGNANLSLNGSNSSSSKGDVYPVEPYDDFLMNPVLDAHWGVLYDEDS 240

Query: 310 SGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESI 369
           +GLRSHTLSMLVNN PGVLNIVTGVISRRGYNIQSLAVGPAE+EGLS ITTV+PGTDESI
Sbjct: 241 NGLRSHTLSMLVNNCPGVLNIVTGVISRRGYNIQSLAVGPAEEEGLSRITTVIPGTDESI 300

Query: 370 GKLVQLLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSD 429
           GKLVQ LHKLIDLHEV+DITH PFAEREL+LIKIA N+AARRDVLDIA+IFRA+AVDVSD
Sbjct: 301 GKLVQQLHKLIDLHEVRDITHSPFAERELMLIKIAANSAARRDVLDIARIFRAKAVDVSD 360

Query: 430 HTITLELTGDLNKIIALQRLLEPYGICEVARTGRVALVRESGVDSTYLRGYPLP 483
           HTITLELTGD NK++ALQR+LEPYGICEVARTGRVALVRESGVDSTYLRG+PLP
Sbjct: 361 HTITLELTGDFNKMVALQRILEPYGICEVARTGRVALVRESGVDSTYLRGFPLP 414

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112371|ref|XP_002316167.1| predicted protein [Populus trichocarpa] gi|222865207|gb|EEF02338.1| predicted protein [Populus trichocarpa]

 Score =  682 bits (1761), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/416 (81%), Positives = 370/416 (88%), Gaps = 10/416 (2%)

Query: 77  VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVV 136
           ++RHTISVFVGDE GIINRIAGVFARRGY+IESLAVGLN DKALFTIVV GTE+VLRQVV
Sbjct: 1   MQRHTISVFVGDEIGIINRIAGVFARRGYSIESLAVGLNKDKALFTIVVCGTEKVLRQVV 60

Query: 137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
           EQLNKLVNVIKVEDIS +P VERELMLIKLN + ST  EIMWLVDIFRAK+VDISEH+LT
Sbjct: 61  EQLNKLVNVIKVEDISRDPQVERELMLIKLNANPSTRAEIMWLVDIFRAKIVDISEHSLT 120

Query: 197 IEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLE---- 252
           IEVTGDPGKM AVQRNLSKFGIKELARTGKIAL+RE +G+TAPFW FSAASYPDL+    
Sbjct: 121 IEVTGDPGKMAAVQRNLSKFGIKELARTGKIALKRETMGETAPFWGFSAASYPDLDRIPS 180

Query: 253 ----EKKRTGIFIPETNQSLNGNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDED 308
               ++  T  F    + SLNG+    +SS+GDVY VEPYDDF ANQVLDAHWG+LYDED
Sbjct: 181 GVALDRNSTNTFAGNGDLSLNGSNT--SSSKGDVYAVEPYDDFLANQVLDAHWGVLYDED 238

Query: 309 PSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDES 368
            +GLRSHTLSMLVNN PGVLNI+TGVISRRGYNIQSLAVG AEKEGLS ITTV+PGTDES
Sbjct: 239 SNGLRSHTLSMLVNNCPGVLNILTGVISRRGYNIQSLAVGHAEKEGLSRITTVIPGTDES 298

Query: 369 IGKLVQLLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVS 428
           IGKLVQ LHK ID HEV+DITH PFAEREL LIKIA N+AARRDVLDIA+IFRA+AVD S
Sbjct: 299 IGKLVQQLHKSIDFHEVRDITHSPFAERELTLIKIAANSAARRDVLDIARIFRAKAVDFS 358

Query: 429 DHTITLELTGDLNKIIALQRLLEPYGICEVARTGRVALVRESGVDSTYLRGYPLPL 484
           DHTITLELTGDLNK++ALQR+LEPYGICEVARTGRVALVRESGVDS++LRG+PLPL
Sbjct: 359 DHTITLELTGDLNKMVALQRILEPYGICEVARTGRVALVRESGVDSSHLRGFPLPL 414

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434187|ref|XP_002279286.1| PREDICTED: uncharacterized protein LOC100261174 [Vitis vinifera] gi|296084341|emb|CBI24729.3| unnamed protein product [Vitis vinifera]

 Score =  672 bits (1735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/450 (74%), Positives = 381/450 (84%), Gaps = 9/450 (2%)

Query: 42  AEVSSKKLQLVTASGSTSNNAL-------PVSQSVPPITASKVKRHTISVFVGDESGIIN 94
           +++ + +L  +  S S++ N +        V+   P    SKV+RHTISVFVGDESG+IN
Sbjct: 33  SKLKNPQLGKLVVSASSAENGVGFNDKTAAVANPAPSAARSKVRRHTISVFVGDESGMIN 92

Query: 95  RIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNE 154
           RIAGVFARRGYNI+SLAVGLN DKALFTIVVSGTERVL+QVVEQL+KLVNV+KVEDIS E
Sbjct: 93  RIAGVFARRGYNIDSLAVGLNKDKALFTIVVSGTERVLQQVVEQLHKLVNVLKVEDISTE 152

Query: 155 PHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLS 214
           PHVERELMLIK+N +     EIMWLV+IFRAK+VDISEH++TIEVTGDPGKMVAVQRNLS
Sbjct: 153 PHVERELMLIKVNANPQYRAEIMWLVNIFRAKIVDISEHSVTIEVTGDPGKMVAVQRNLS 212

Query: 215 KFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLNGNANV 274
           KFGI+E+ARTGKIALRREK+G++APFW FSA+SYPDLE +     F+    ++LN  +  
Sbjct: 213 KFGIREIARTGKIALRREKMGESAPFWRFSASSYPDLEGEIPENTFVETRTKTLNSES-- 270

Query: 275 DTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGV 334
           D S  GDVYPVEP D F  N+VLDAHWG+LYDED SGLRSHTLSM+VNN PGVLN+VTGV
Sbjct: 271 DASVGGDVYPVEPSDGFLFNKVLDAHWGVLYDEDTSGLRSHTLSMVVNNAPGVLNLVTGV 330

Query: 335 ISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFA 394
            +RRGYNIQSLAVG AE EGLS ITTVVPGTDESI KLVQ L KLIDLH+V+DITHLPFA
Sbjct: 331 FARRGYNIQSLAVGHAEVEGLSRITTVVPGTDESINKLVQQLKKLIDLHDVRDITHLPFA 390

Query: 395 ERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLEPYG 454
           EREL+LIKIAVN AARRDVLDIA IFRA+A+DVSDHTITLELTG L+K++ALQRLLEPYG
Sbjct: 391 ERELMLIKIAVNAAARRDVLDIASIFRAKAIDVSDHTITLELTGALDKMVALQRLLEPYG 450

Query: 455 ICEVARTGRVALVRESGVDSTYLRGYPLPL 484
           ICEVARTGRVALVRESGVDS YLRGY  PL
Sbjct: 451 ICEVARTGRVALVRESGVDSNYLRGYAFPL 480

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577893|ref|XP_002529819.1| acetolactate synthase, putative [Ricinus communis] gi|223530696|gb|EEF32568.1| acetolactate synthase, putative [Ricinus communis]

 Score =  670 bits (1728), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/452 (74%), Positives = 381/452 (84%), Gaps = 11/452 (2%)

Query: 33  QGRTSFSSSAEVSSKKLQLVTASGSTSNNALPVSQSVPPITASKVKRHTISVFVGDESGI 92
           Q R  F  SA   S K   V     +SN ++P +      T SKV+RHTISVFVGDESG+
Sbjct: 53  QPRRKFIVSATADSHKDDTVL----SSNGSVPAAA-----TLSKVRRHTISVFVGDESGM 103

Query: 93  INRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS 152
           INRIAGVFARRGYNIESLAVGLN DKALFTIVVSGTERVL+QVVEQL KLVNV+KVED+S
Sbjct: 104 INRIAGVFARRGYNIESLAVGLNKDKALFTIVVSGTERVLQQVVEQLQKLVNVMKVEDLS 163

Query: 153 NEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRN 212
           +EP VERELMLIK+N D S   EIMWLV IFRAK+VDISEH+LTIEVTGDPGKMVAVQRN
Sbjct: 164 SEPQVERELMLIKVNADPSYRAEIMWLVGIFRAKIVDISEHSLTIEVTGDPGKMVAVQRN 223

Query: 213 LSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLNGNA 272
           LSKFGI+E+ARTGKIALRREK+G+ APFW FSAASYPDL E +     +   ++++ G+ 
Sbjct: 224 LSKFGIREIARTGKIALRREKMGECAPFWRFSAASYPDLGEIRSEDALLGSKSRAVLGDD 283

Query: 273 NVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVT 332
             +TS+ GDVYPVE  D F   QVLDAHWG+L +ED +GLRSHTLSMLVN++PGVLNIVT
Sbjct: 284 --ETSAGGDVYPVETSDSFMLTQVLDAHWGVLNEEDTTGLRSHTLSMLVNDSPGVLNIVT 341

Query: 333 GVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLP 392
           G+ +RRGYN+QSLAVG +E EGLS ITTVVPGTDESI KLVQ L+KLIDLHEV+D+THLP
Sbjct: 342 GIFARRGYNVQSLAVGHSETEGLSRITTVVPGTDESISKLVQQLYKLIDLHEVRDLTHLP 401

Query: 393 FAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLEP 452
           FAEREL+LIKIAVN AARRDVLDIA IFRA+AVDVSDHTITLELTGDL+K++ALQRLLEP
Sbjct: 402 FAERELMLIKIAVNAAARRDVLDIASIFRAKAVDVSDHTITLELTGDLDKMVALQRLLEP 461

Query: 453 YGICEVARTGRVALVRESGVDSTYLRGYPLPL 484
           YGICEVARTGR+ALVRESGVDS YLRGY  P+
Sbjct: 462 YGICEVARTGRIALVRESGVDSKYLRGYSFPI 493

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147792338|emb|CAN61470.1| hypothetical protein VITISV_043824 [Vitis vinifera]

 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/410 (80%), Positives = 365/410 (89%), Gaps = 2/410 (0%)

Query: 75  SKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQ 134
           S+V+RHTISVFVGDESG+INRIAGVFARRGYNI+SLAVGLN DKALFTIVVSGTERVL+Q
Sbjct: 42  SQVRRHTISVFVGDESGMINRIAGVFARRGYNIDSLAVGLNKDKALFTIVVSGTERVLQQ 101

Query: 135 VVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHA 194
           VVEQL+KLVNV+KVEDIS EPHVERELMLIK+N +     EIMWLV+IFRAK+VDISEH+
Sbjct: 102 VVEQLHKLVNVLKVEDISTEPHVERELMLIKVNANPQYRAEIMWLVNIFRAKIVDISEHS 161

Query: 195 LTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLEEK 254
           +TIEVTGDPGKMVAVQRNLSKFGI+E+ARTGKIALRREK+G++APFW FSA+SYPDLE +
Sbjct: 162 VTIEVTGDPGKMVAVQRNLSKFGIREIARTGKIALRREKMGESAPFWRFSASSYPDLEGE 221

Query: 255 KRTGIFIPETNQSLNGNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRS 314
                F+    ++LN  +  D S  GDVYPVEP D F  N+VLDAHWG+LYDED SGLRS
Sbjct: 222 IPENTFVETRTKTLNSES--DASVGGDVYPVEPSDGFLFNKVLDAHWGVLYDEDTSGLRS 279

Query: 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQ 374
           HTLSM+VNN PGVLN+VTGV +RRGYNIQSLAVG AE EGLS ITTVVPGTDESI KLVQ
Sbjct: 280 HTLSMVVNNAPGVLNLVTGVFARRGYNIQSLAVGHAEVEGLSRITTVVPGTDESINKLVQ 339

Query: 375 LLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITL 434
            L KLIDLH+V+DITHLPFAEREL+LIKIAVN AARRDVLDIA IFRA+A+DVSDHTITL
Sbjct: 340 QLKKLIDLHDVRDITHLPFAERELMLIKIAVNAAARRDVLDIASIFRAKAIDVSDHTITL 399

Query: 435 ELTGDLNKIIALQRLLEPYGICEVARTGRVALVRESGVDSTYLRGYPLPL 484
           ELTG L+K++ALQRLLEPYGICEVARTGRVALVRESGVDS YLRGY  PL
Sbjct: 400 ELTGALDKMVALQRLLEPYGICEVARTGRVALVRESGVDSNYLRGYAFPL 449

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237321|ref|NP_197133.1| protein valine-tolerant 1 [Arabidopsis thaliana] gi|30685790|ref|NP_850829.1| protein valine-tolerant 1 [Arabidopsis thaliana] gi|75271992|sp|Q9FFF4.1|ILVH1_ARATH RecName: Full=Acetolactate synthase small subunit 1, chloroplastic; AltName: Full=Acetohydroxy-acid synthase small subunit; Short=AHAS; Short=ALS; AltName: Full=Protein valine-tolerant 1; Flags: Precursor gi|9759111|dbj|BAB09596.1| acetolactate synthase-like protein [Arabidopsis thaliana] gi|63003744|gb|AAY25401.1| At5g16290 [Arabidopsis thaliana] gi|110742103|dbj|BAE98982.1| acetolactate synthase-like protein [Arabidopsis thaliana] gi|332004889|gb|AED92272.1| protein valine-tolerant 1 [Arabidopsis thaliana] gi|332004890|gb|AED92273.1| protein valine-tolerant 1 [Arabidopsis thaliana]

 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/455 (72%), Positives = 381/455 (83%), Gaps = 5/455 (1%)

Query: 31  PSQGRTSFSSSAEVSSKKLQLVTA-SGSTSNNALPVSQSVPPITASKVKRHTISVFVGDE 89
           P++   S   +  +  +K++  T  S ++++ A+  +QSV P    +V+RHTISVFVGDE
Sbjct: 27  PAKTPNSLQVNQIIDGRKMRNATVLSAASTDKAITTAQSVAPTACDRVRRHTISVFVGDE 86

Query: 90  SGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVE 149
           SGIINRIAGVFARRGYNIESLAVGLN DKALFTIVV GT++VL+QVVEQLNKLVNVIKVE
Sbjct: 87  SGIINRIAGVFARRGYNIESLAVGLNEDKALFTIVVLGTDKVLQQVVEQLNKLVNVIKVE 146

Query: 150 DISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAV 209
           D+S EPHVERELMLIKLN D ST  EIMWLVDIFRAK+VD SE +LTIEVTGDPGKMVA+
Sbjct: 147 DLSKEPHVERELMLIKLNADPSTRSEIMWLVDIFRAKIVDTSEQSLTIEVTGDPGKMVAL 206

Query: 210 QRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLN 269
             NL KFGIKE+ARTGKIALRREK+G+TAPFW FSAASYP L ++        +T  +L 
Sbjct: 207 TTNLEKFGIKEIARTGKIALRREKMGETAPFWRFSAASYPHLVKESSHETVAEKTKLALT 266

Query: 270 GNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLN 329
           GN N   SS GDVYPVEPY+DF    VLDAHWG++YDED SGLRSHTLS+LV N PGVLN
Sbjct: 267 GNGNA--SSGGDVYPVEPYNDFKP--VLDAHWGMVYDEDSSGLRSHTLSLLVANVPGVLN 322

Query: 330 IVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDIT 389
           ++TG ISRRGYNIQSLAVGPAEKEGLS ITTV+PGTDE+I KLV+ L KLIDL E+Q+IT
Sbjct: 323 LITGAISRRGYNIQSLAVGPAEKEGLSRITTVIPGTDENIDKLVRQLQKLIDLQEIQNIT 382

Query: 390 HLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRL 449
           H+PFAEREL+LIK+A +T+ARRDVLDIA++FRA+A+DVSDHTITLE+TGDL K+ ALQ  
Sbjct: 383 HMPFAERELMLIKVAADTSARRDVLDIAQVFRAKAIDVSDHTITLEVTGDLRKMSALQTQ 442

Query: 450 LEPYGICEVARTGRVALVRESGVDSTYLRGYPLPL 484
           LE YGICEVARTGRVALVRESGVDSTYLRGY LPL
Sbjct: 443 LEAYGICEVARTGRVALVRESGVDSTYLRGYSLPL 477

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222423112|dbj|BAH19535.1| AT5G16290 [Arabidopsis thaliana]

 Score =  666 bits (1719), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/455 (72%), Positives = 381/455 (83%), Gaps = 5/455 (1%)

Query: 31  PSQGRTSFSSSAEVSSKKLQLVTA-SGSTSNNALPVSQSVPPITASKVKRHTISVFVGDE 89
           P++   S   +  +  +K++  T  S ++++ A+  +QSV P    +V+RHTISVFVGDE
Sbjct: 27  PAKTPNSLQVNQIIDGRKMRNATVLSAASTDKAITTAQSVAPTACDRVRRHTISVFVGDE 86

Query: 90  SGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVE 149
           SGIINRIAGVFARRGYNIESLAVGLN DKALFTIVV GT++VL+QVVEQLNKLVNVIKVE
Sbjct: 87  SGIINRIAGVFARRGYNIESLAVGLNEDKALFTIVVLGTDKVLQQVVEQLNKLVNVIKVE 146

Query: 150 DISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAV 209
           D+S EPHVERELMLIKLN D ST  EIMWLVDIFRAK+VD SE +LTIEVTGDPGKMVA+
Sbjct: 147 DLSKEPHVERELMLIKLNADPSTRSEIMWLVDIFRAKIVDTSEQSLTIEVTGDPGKMVAL 206

Query: 210 QRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLN 269
             NL KFGI+E+ARTGKIALRREK+G+TAPFW FSAASYP L ++        +T  +L 
Sbjct: 207 TTNLEKFGIQEIARTGKIALRREKMGETAPFWRFSAASYPHLVKESSHETVAEKTKLALT 266

Query: 270 GNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLN 329
           GN N   SS GDVYPVEPY+DF    VLDAHWG++YDED SGLRSHTLS+LV N PGVLN
Sbjct: 267 GNGNA--SSGGDVYPVEPYNDFKP--VLDAHWGMVYDEDSSGLRSHTLSLLVANVPGVLN 322

Query: 330 IVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDIT 389
           ++TG ISRRGYNIQSLAVGPAEKEGLS ITTV+PGTDE+I KLV+ L KLIDL E+Q+IT
Sbjct: 323 LITGAISRRGYNIQSLAVGPAEKEGLSRITTVIPGTDENIDKLVRQLQKLIDLQEIQNIT 382

Query: 390 HLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRL 449
           H+PFAEREL+LIK+A +T+ARRDVLDIA++FRA+A+DVSDHTITLE+TGDL K+ ALQ  
Sbjct: 383 HMPFAERELMLIKVAADTSARRDVLDIAQVFRAKAIDVSDHTITLEVTGDLRKMSALQTQ 442

Query: 450 LEPYGICEVARTGRVALVRESGVDSTYLRGYPLPL 484
           LE YGICEVARTGRVALVRESGVDSTYLRGY LPL
Sbjct: 443 LEAYGICEVARTGRVALVRESGVDSTYLRGYSLPL 477

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807659|ref|XP_002871713.1| hypothetical protein ARALYDRAFT_488480 [Arabidopsis lyrata subsp. lyrata] gi|297317550|gb|EFH47972.1| hypothetical protein ARALYDRAFT_488480 [Arabidopsis lyrata subsp. lyrata]

 Score =  664 bits (1712), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/456 (72%), Positives = 382/456 (83%), Gaps = 6/456 (1%)

Query: 31  PSQGRTSFSSSAEVSSKKLQLVTA-SGSTSNNALPVSQSVPPITASKVKRHTISVFVGDE 89
           P++   S   +  +  +K++  T  S ++++ A+  +QS+ P    +V+RHTISVFVGDE
Sbjct: 25  PAKTPNSLQVTPIIDGRKMRNATVLSAASTDKAITTAQSIAPTACDRVRRHTISVFVGDE 84

Query: 90  SGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVE 149
           SGIINRIAGVFARRGYNIESLAVGLN DKALFTIVV GT++VL+QVVEQLNKLVNVIKVE
Sbjct: 85  SGIINRIAGVFARRGYNIESLAVGLNEDKALFTIVVLGTDKVLQQVVEQLNKLVNVIKVE 144

Query: 150 DISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAV 209
           D+S EPHVERELMLIKLN D ST  EIMWLVDIFRAK+VD SEH+LTIEVTGDPGKMVA+
Sbjct: 145 DLSKEPHVERELMLIKLNADPSTRSEIMWLVDIFRAKIVDTSEHSLTIEVTGDPGKMVAL 204

Query: 210 QRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLEEKKRTGIFIPE-TNQSL 268
             NL KFGIKE+ARTGKIALRREK+G+TAPFW FSAASYP L  +  +   + E T  +L
Sbjct: 205 TTNLEKFGIKEIARTGKIALRREKMGETAPFWRFSAASYPHLVNESSSHETVAEKTKLAL 264

Query: 269 NGNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVL 328
            GN N   S  GDVYPVEPY+DF    VLDAHWG++YDED SGLRSHTLS+LV N PGVL
Sbjct: 265 TGNGNA--SPGGDVYPVEPYNDFKP--VLDAHWGMVYDEDSSGLRSHTLSLLVANVPGVL 320

Query: 329 NIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI 388
           N++TG ISRRGYNIQSLAVGPAEKEGLS ITTV+PGTDE+I KLV+ L KLIDL E+Q+I
Sbjct: 321 NLITGAISRRGYNIQSLAVGPAEKEGLSRITTVIPGTDENIDKLVRQLQKLIDLQEIQNI 380

Query: 389 THLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQR 448
           TH+PFAEREL+LIK+A +T+ARRDVLDIA++FRA+A+DVSDHTITLE+TGDL K+ ALQ 
Sbjct: 381 THMPFAERELMLIKVAADTSARRDVLDIAQVFRAKAIDVSDHTITLEVTGDLRKMSALQT 440

Query: 449 LLEPYGICEVARTGRVALVRESGVDSTYLRGYPLPL 484
            LE YG+CEVARTGRVALVRESGVDSTYLRGY LPL
Sbjct: 441 QLEAYGLCEVARTGRVALVRESGVDSTYLRGYSLPL 476

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	484
TAIR|locus:2171292	477	VAT1 "VALINE-TOLERANT 1" [Arab	0.896	0.909	0.747	2.8e-169
TAIR|locus:2045248	491	AT2G31810 [Arabidopsis thalian	0.884	0.871	0.722	7.3e-162
TIGR_CMR|CHY_0518	170	CHY_0518 "acetolactate synthas	0.316	0.9	0.574	1.2e-40
UNIPROTKB|P65161	168	ilvH "Putative acetolactate sy	0.326	0.940	0.462	9.5e-34
TIGR_CMR|DET_0832	178	DET_0832 "acetolactate synthas	0.316	0.859	0.470	2.9e-32
TIGR_CMR|GSU_1910	163	GSU_1910 "acetolactate synthas	0.324	0.963	0.433	4.7e-32
TIGR_CMR|CHY_1594	164	CHY_1594 "acetolactate synthas	0.318	0.939	0.441	7.4e-28
TIGR_CMR|SPO_2579	186	SPO_2579 "acetolactate synthas	0.353	0.919	0.397	5.6e-25
TIGR_CMR|BA_1418	169	BA_1418 "acetolactate synthase	0.303	0.869	0.429	9.4e-25
TIGR_CMR|CPS_3237	165	CPS_3237 "acetolactate synthas	0.324	0.951	0.378	9.4e-25

TAIR|locus:2171292 VAT1 "VALINE-TOLERANT 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1646 (584.5 bits), Expect = 2.8e-169, P = 2.8e-169
 Identities = 328/439 (74%), Positives = 375/439 (85%)

Query:    47 KKLQLVTA-SGSTSNNALPVSQSVPPITASKVKRHTISVFVGDESGIINRIAGVFARRGY 105
             +K++  T  S ++++ A+  +QSV P    +V+RHTISVFVGDESGIINRIAGVFARRGY
Sbjct:    43 RKMRNATVLSAASTDKAITTAQSVAPTACDRVRRHTISVFVGDESGIINRIAGVFARRGY 102

Query:   106 NIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIK 165
             NIESLAVGLN DKALFTIVV GT++VL+QVVEQLNKLVNVIKVED+S EPHVERELMLIK
Sbjct:   103 NIESLAVGLNEDKALFTIVVLGTDKVLQQVVEQLNKLVNVIKVEDLSKEPHVERELMLIK 162

Query:   166 LNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTG 225
             LN D ST  EIMWLVDIFRAK+VD SE +LTIEVTGDPGKMVA+  NL KFGIKE+ARTG
Sbjct:   163 LNADPSTRSEIMWLVDIFRAKIVDTSEQSLTIEVTGDPGKMVALTTNLEKFGIKEIARTG 222

Query:   226 KIALRREKLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLNGNANVDTSSRGDVYPV 285
             KIALRREK+G+TAPFW FSAASYP L ++        +T  +L GN N   SS GDVYPV
Sbjct:   223 KIALRREKMGETAPFWRFSAASYPHLVKESSHETVAEKTKLALTGNGNA--SSGGDVYPV 280

Query:   286 EPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSL 345
             EPY+DF    VLDAHWG++YDED SGLRSHTLS+LV N PGVLN++TG ISRRGYNIQSL
Sbjct:   281 EPYNDFKP--VLDAHWGMVYDEDSSGLRSHTLSLLVANVPGVLNLITGAISRRGYNIQSL 338

Query:   346 AVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFAERELILIKIAV 405
             AVGPAEKEGLS ITTV+PGTDE+I KLV+ L KLIDL E+Q+ITH+PFAEREL+LIK+A 
Sbjct:   339 AVGPAEKEGLSRITTVIPGTDENIDKLVRQLQKLIDLQEIQNITHMPFAERELMLIKVAA 398

Query:   406 NTAARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLEPYGICEVARTGRVA 465
             +T+ARRDVLDIA++FRA+A+DVSDHTITLE+TGDL K+ ALQ  LE YGICEVARTGRVA
Sbjct:   399 DTSARRDVLDIAQVFRAKAIDVSDHTITLEVTGDLRKMSALQTQLEAYGICEVARTGRVA 458

Query:   466 LVRESGVDSTYLRGYPLPL 484
             LVRESGVDSTYLRGY LPL
Sbjct:   459 LVRESGVDSTYLRGYSLPL 477

GO:0003984 "acetolactate synthase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009082 "branched-chain amino acid biosynthetic process" evidence=IEA;TAS

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA

GO:0006551 "leucine metabolic process" evidence=IMP

GO:0006573 "valine metabolic process" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

TAIR|locus:2045248 AT2G31810 [Arabidopsis thaliana (taxid:3702)]

 Score = 1576 (559.8 bits), Expect = 7.3e-162, P = 7.3e-162
 Identities = 312/432 (72%), Positives = 363/432 (84%)

Query:    53 TASGSTSNNALPVSQSVPPITASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAV 112
             +  G  S+ +   + S  P   SKV++HTISVFVGDESG+INRIAGVFARRGYNIESLAV
Sbjct:    62 SVDGKISDASFSEASSATP--KSKVRKHTISVFVGDESGMINRIAGVFARRGYNIESLAV 119

Query:   113 GLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTST 172
             GLN DKALFTIVV GTERVL+QV+EQL KLVNV+KVEDIS+EP VERELML+K+N    +
Sbjct:   120 GLNRDKALFTIVVCGTERVLQQVIEQLQKLVNVLKVEDISSEPQVERELMLVKVNAHPES 179

Query:   173 WPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRRE 232
               EIMWLVD FRA+VVDI+EHALTIEVTGDPGKM+AV+RNL KF I+E+ RTGKIALRRE
Sbjct:   180 RAEIMWLVDTFRARVVDIAEHALTIEVTGDPGKMIAVERNLKKFQIREIVRTGKIALRRE 239

Query:   233 KLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLNGNANVDTSSRGDVYPVEPYDDFS 292
             K+G TAPFW FSAASYPDL+E+    +       ++      +TS+ GDVYPVEP+ D  
Sbjct:   240 KMGATAPFWRFSAASYPDLKEQAPVSVLRSSKKGAIVPQK--ETSAGGDVYPVEPFFDPK 297

Query:   293 ANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK 352
              +++LDAHWG+L DED SGLRSHTLS+LVN+ PGVLNIVTGV +RRGYNIQSLAVG AE 
Sbjct:   298 VHRILDAHWGLLTDEDTSGLRSHTLSLLVNDIPGVLNIVTGVFARRGYNIQSLAVGHAET 357

Query:   353 EGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRD 412
             +G+S ITTV+P TDES+ KLVQ L+KL+D+HEV D+THLPF+EREL+LIKIAVN AARRD
Sbjct:   358 KGISRITTVIPATDESVSKLVQQLYKLVDVHEVHDLTHLPFSERELMLIKIAVNAAARRD 417

Query:   413 VLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLEPYGICEVARTGRVALVRESGV 472
             VLDIA IFRA+AVDVSDHTITL+LTGDL+K++ALQRLLEPYGICEVARTGRVAL RESGV
Sbjct:   418 VLDIASIFRAKAVDVSDHTITLQLTGDLDKMVALQRLLEPYGICEVARTGRVALARESGV 477

Query:   473 DSTYLRGYPLPL 484
             DS YLRGY  PL
Sbjct:   478 DSKYLRGYSFPL 489

GO:0003984 "acetolactate synthase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009082 "branched-chain amino acid biosynthetic process" evidence=IEA;TAS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016597 "amino acid binding" evidence=IEA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

TIGR_CMR|CHY_0518 CHY_0518 "acetolactate synthase, small subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
 Identities = 89/155 (57%), Positives = 119/155 (76%)

Query:    79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGL--NVDKALFTIVVSGTERVLRQVV 136
             RHT++V V +  G++ R+AG+F+RRGYNI+SLAVG   N D +  TIVV G +RVL QVV
Sbjct:     2 RHTLAVLVENNPGVLARVAGLFSRRGYNIDSLAVGRTENPDISRMTIVVEGDDRVLEQVV 61

Query:   137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
             +QL KLV+VIKV+DI++E +V REL+L+K++ D++T  EIM +V+IFRA++VDI    LT
Sbjct:    62 KQLRKLVDVIKVQDITSEQYVSRELLLLKVHADSNTRGEIMQIVEIFRARIVDIGPKTLT 121

Query:   197 IEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRR 231
             IE TGD  K+ A++  L  FGIKEL RTGKIAL R
Sbjct:   122 IEATGDEDKIEAIENALRPFGIKELVRTGKIALLR 156

GO:0003984 "acetolactate synthase activity" evidence=ISS

GO:0005948 "acetolactate synthase complex" evidence=ISS

GO:0009097 "isoleucine biosynthetic process" evidence=ISS

GO:0009099 "valine biosynthetic process" evidence=ISS

UNIPROTKB|P65161 ilvH "Putative acetolactate synthase small subunit" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 74/160 (46%), Positives = 111/160 (69%)

Query:    78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV--DKALFTIVVSGTERVLRQV 135
             K HT+SV V D+ G++ R+A +F+RRG+NIESLAVG     D++  TIVVS  +  L Q+
Sbjct:     4 KTHTLSVLVEDKPGVLARVAALFSRRGFNIESLAVGATECKDRSRMTIVVSAEDTPLEQI 63

Query:   136 VEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHAL 195
              +QLNKL+NVIK+ +  +E  V REL LIK+  D  +  +++  V++FRA V+D+S  +L
Sbjct:    64 TKQLNKLINVIKIVEQDDEHSVSRELALIKVQADAGSRSQVIEAVNLFRANVIDVSPESL 123

Query:   196 TIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLG 235
             T+E TG+ GK+ A+ R L  FGI+E+A++G ++L R   G
Sbjct:   124 TVEATGNRGKLEALLRVLEPFGIREIAQSGMVSLSRGPRG 163

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0040007 "growth" evidence=IMP

TIGR_CMR|DET_0832 DET_0832 "acetolactate synthase, small subunit" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 73/155 (47%), Positives = 106/155 (68%)

Query:    79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVV 136
             +HTI   V D  G++NR+A +F RRG+NI+S+AVG +        TIVV G   ++ QV 
Sbjct:     5 KHTIVALVEDRPGVLNRMASLFRRRGFNIDSIAVGRSETPGFSRMTIVVDGANTMVEQVR 64

Query:   137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
             +QL+K+V+V+KV DI+ +  + REL LIK+    +   EIM +VDIFRAK+VD++  +LT
Sbjct:    65 KQLDKVVDVVKVSDITGQDIICRELALIKVKSTPANRSEIMQIVDIFRAKIVDVASDSLT 124

Query:   197 IEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRR 231
             +EVTGD  K+ ++   L  FGIKE+ RTG+IA+ R
Sbjct:   125 VEVTGDEEKVNSLYNLLRAFGIKEITRTGRIAMTR 159

GO:0003984 "acetolactate synthase activity" evidence=ISS

GO:0005948 "acetolactate synthase complex" evidence=ISS

GO:0009097 "isoleucine biosynthetic process" evidence=ISS

GO:0009099 "valine biosynthetic process" evidence=ISS

TIGR_CMR|GSU_1910 GSU_1910 "acetolactate synthase, small subunit" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 69/159 (43%), Positives = 109/159 (68%)

Query:    79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVV 136
             RHTI+V V +E G+++R+AG+F+ RG+NI+SL+V    D+++   TIV  G +++L Q+ 
Sbjct:     2 RHTITVLVENEFGVLSRVAGLFSGRGFNIDSLSVAPTNDESISRMTIVTRGDDQILEQIT 61

Query:   137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
             +QLNKL++VIKV D ++   +ERE+ LIK+  +     E++ +VDIFR+K++D++  + T
Sbjct:    62 KQLNKLIDVIKVIDFTDGEVIEREMALIKVTAEDDARAEVLRIVDIFRSKIIDVTPRSFT 121

Query:   197 IEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLG 235
             IE TG P K+ A+   L   G+KEL RTG  A+ R   G
Sbjct:   122 IEATGTPAKIDAILELLRPLGLKELVRTGPAAIGRGAKG 160

GO:0003984 "acetolactate synthase activity" evidence=ISS

GO:0005948 "acetolactate synthase complex" evidence=ISS

GO:0009097 "isoleucine biosynthetic process" evidence=ISS

GO:0009099 "valine biosynthetic process" evidence=ISS

TIGR_CMR|CHY_1594 CHY_1594 "acetolactate synthase, small subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 313 (115.2 bits), Expect = 7.4e-28, P = 7.4e-28
 Identities = 68/154 (44%), Positives = 102/154 (66%)

Query:   315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQ 374
             HTLS+LV N PGVL  ++G++SRR +NI+S+  G +E+  ++ IT VV G D  + +++ 
Sbjct:     3 HTLSVLVLNKPGVLARISGLLSRRMFNIESITAGYSEEPNITRITIVVQGDDLVLEQVIN 62

Query:   375 LLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITL 434
              L KLID+ +++++       REL LIK+      R D+++I  IFRA  VDV+  T+ +
Sbjct:    63 QLSKLIDVIKIKELPMEETIARELALIKVRALPEKRADIVNIVNIFRANIVDVNRETMVI 122

Query:   435 ELTGDLNKIIALQRLLEPYGICEVARTGRVALVR 468
             ELTGD +KI AL  +L  +GI E+ RTG+VAL R
Sbjct:   123 ELTGDEDKINALCEVLTDHGIVEIVRTGKVALNR 156

GO:0003984 "acetolactate synthase activity" evidence=ISS

GO:0005948 "acetolactate synthase complex" evidence=ISS

GO:0009097 "isoleucine biosynthetic process" evidence=ISS

GO:0009099 "valine biosynthetic process" evidence=ISS

TIGR_CMR|SPO_2579 SPO_2579 "acetolactate synthase, small subunit" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 288 (106.4 bits), Expect = 5.6e-25, P = 5.6e-25
 Identities = 72/181 (39%), Positives = 108/181 (59%)

Query:    56 GSTSNNALPVSQSVPPITASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLN 115
             GS+S++A     ++ P  +   +RHTI++ V +E G++ R+ G+F+ RGYNIESL V   
Sbjct:     9 GSSSHSAY----NLRPTFSDVAERHTIALLVENEPGVLARVIGLFSGRGYNIESLTVA-E 63

Query:   116 VDK----ALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPH-VERELMLIKLNGDT 170
             VD     +  TIV +GT +V+ Q+  QL ++V+V  V D++ E   VEREL ++K+ G  
Sbjct:    64 VDHTGHLSRITIVTTGTPQVIEQIKAQLGRIVSVRDVHDLTVEGRSVERELAMLKVVGSG 123

Query:   171 STWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALR 230
                 E + L DIFRA VVD +  +   E+TG P K+ A    +   G+ E+ARTG  AL 
Sbjct:   124 DKRVEALRLADIFRANVVDSTLSSFVFEITGAPEKIDAFADLMRPLGLAEIARTGVAALL 183

Query:   231 R 231
             R
Sbjct:   184 R 184

GO:0003984 "acetolactate synthase activity" evidence=ISS

GO:0005948 "acetolactate synthase complex" evidence=ISS

GO:0009097 "isoleucine biosynthetic process" evidence=ISS

GO:0009099 "valine biosynthetic process" evidence=ISS

TIGR_CMR|BA_1418 BA_1418 "acetolactate synthase, small subunit" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 286 (105.7 bits), Expect = 9.4e-25, P = 9.4e-25
 Identities = 64/149 (42%), Positives = 94/149 (63%)

Query:   321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDES-IGKLVQLLHKL 379
             V N  GVLN +TGV++RR +NI+S++VG  E   +S +T VV   +E  + +L++ LHK 
Sbjct:     9 VRNQSGVLNRITGVMTRRHFNIESISVGHTESSDISRMTIVVHVENEQQVEQLIKQLHKQ 68

Query:   380 IDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLELTGD 439
             ID+ +V DIT      REL LIK+A + A R ++  + + FRA  +DV   +I +++TG 
Sbjct:    69 IDVLKVSDITEEAMIARELALIKVATSVA-RAELYSLIEPFRAAVIDVGKDSIVVQVTGT 127

Query:   440 LNKIIALQRLLEPYGICEVARTGRVALVR 468
               K+ AL  LL PYG+ E+ARTG  A  R
Sbjct:   128 QEKVEALIELLRPYGLKEIARTGVTAFTR 156

GO:0003984 "acetolactate synthase activity" evidence=ISS

GO:0005948 "acetolactate synthase complex" evidence=ISS

GO:0009097 "isoleucine biosynthetic process" evidence=ISS

GO:0009099 "valine biosynthetic process" evidence=ISS

TIGR_CMR|CPS_3237 CPS_3237 "acetolactate synthase III, small subunit" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 286 (105.7 bits), Expect = 9.4e-25, P = 9.4e-25
 Identities = 62/164 (37%), Positives = 104/164 (63%)

Query:    79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVV 136
             R  +++ + +E G ++RI G+F++R +NIESL V    D +L   TI   G ++VL Q+V
Sbjct:     2 RRILAILMENEPGSLSRIVGLFSQRAFNIESLTVAPTDDNSLSRMTIATKGDDKVLEQIV 61

Query:   137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNG-DTSTWPEIMWLVDIFRAKVVDISEHAL 195
             +Q+NKL++VIK+ DI++  H+EREL+L+K+   +  +  E+  + DIFR  ++DI +   
Sbjct:    62 KQVNKLIDVIKITDITDRKHIERELLLVKVAAMNDKSRTEVTRITDIFRGNIIDIGKQVY 121

Query:   196 TIEVTGDPGKMVAVQRNL-SKFGIKELARTGKIALRREKLGDTA 238
             T+++TGD  K+ A    L ++  I E AR+G + + R   GD A
Sbjct:   122 TVQLTGDAEKLNAFINALQNETEIIESARSGCVGMAR---GDQA 162

GO:0003984 "acetolactate synthase activity" evidence=ISS

GO:0005948 "acetolactate synthase complex" evidence=ISS

GO:0009097 "isoleucine biosynthetic process" evidence=ISS

GO:0009099 "valine biosynthetic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SMC2	ILVH_NICPL	No assigned EC number	0.7729	0.7603	0.8195	N/A	no
Q93YZ7	ILVH2_ARATH	No assigned EC number	0.7185	0.8615	0.8492	no	no
Q9FFF4	ILVH1_ARATH	No assigned EC number	0.7252	0.9297	0.9433	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.2.1	LOW CONFIDENCE prediction!
4th Layer	2.2.1.6	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00012144001	SubName- Full=Chromosome undetermined scaffold_351, whole genome shotgun sequence; (421 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00026591001	RecName- Full=3-isopropylmalate dehydrogenase; EC=1.1.1.85;; Catalyzes the oxidation of 3-carbo [...] (405 aa)	•					•	•		0.972
	GSVIVG00000550001	SubName- Full=Chromosome chr8 scaffold_106, whole genome shotgun sequence; (476 aa)	•					•	•		0.959
	GSVIVG00018719001	SubName- Full=Putative uncharacterized protein (Chromosome chr12 scaffold_18, whole genome shot [...] (588 aa)	•					•	•		0.958
	GSVIVG00037861001	RecName- Full=Acetolactate synthase; EC=2.2.1.6; (657 aa)	•		•			•	•		0.935
	GSVIVG00020486001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (564 aa)	•						•		0.932
	GSVIVG00029877001	RecName- Full=Acetolactate synthase; EC=2.2.1.6; (616 aa)	•		•			•	•		0.923
	GSVIVG00005682001	SubName- Full=Chromosome chr5 scaffold_156, whole genome shotgun sequence; (447 aa)	•						•		0.912
	GSVIVG00028924001	SubName- Full=Chromosome chr1 scaffold_46, whole genome shotgun sequence; (398 aa)						•			0.899
	GSVIVG00028312001	SubName- Full=Chromosome chr10 scaffold_43, whole genome shotgun sequence; (197 aa)						•			0.899
	GSVIVG00026166001	SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (89 aa)						•			0.899

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	484
PRK11895	161	PRK11895, ilvH, acetolactate synthase 3 regulatory	8e-71
CHL00100	174	CHL00100, ilvH, acetohydroxyacid synthase small su	1e-67
CHL00100	174	CHL00100, ilvH, acetohydroxyacid synthase small su	7e-66
PRK11895	161	PRK11895, ilvH, acetolactate synthase 3 regulatory	3e-63
TIGR00119	157	TIGR00119, acolac_sm, acetolactate synthase, small	1e-56
COG0440	163	COG0440, IlvH, Acetolactate synthase, small (regul	7e-56
COG0440	163	COG0440, IlvH, Acetolactate synthase, small (regul	2e-51
TIGR00119	157	TIGR00119, acolac_sm, acetolactate synthase, small	8e-50
pfam10369	75	pfam10369, ALS_ss_C, Small subunit of acetolactate	3e-29
cd04878	72	cd04878, ACT_AHAS, N-terminal ACT domain of the Es	3e-28
pfam10369	75	pfam10369, ALS_ss_C, Small subunit of acetolactate	4e-28
cd04878	72	cd04878, ACT_AHAS, N-terminal ACT domain of the Es	1e-25
pfam13710	63	pfam13710, ACT_5, ACT domain	5e-12
pfam13710	63	pfam13710, ACT_5, ACT domain	6e-10
PRK06737	76	PRK06737, PRK06737, acetolactate synthase 1 regula	5e-08
pfam01842	66	pfam01842, ACT, ACT domain	4e-07
PRK06737	76	PRK06737, PRK06737, acetolactate synthase 1 regula	5e-07
pfam01842	66	pfam01842, ACT, ACT domain	8e-07
cd02116	60	cd02116, ACT, ACT domains are commonly involved in	1e-04
cd02116	60	cd02116, ACT, ACT domains are commonly involved in	2e-04
cd04883	72	cd04883, ACT_AcuB, C-terminal ACT domain of the Ba	0.001
pfam13291	77	pfam13291, ACT_4, ACT domain	0.003
PRK08178	96	PRK08178, PRK08178, acetolactate synthase 1 regula	0.003
PRK08178	96	PRK08178, PRK08178, acetolactate synthase 1 regula	0.003
cd04879	71	cd04879, ACT_3PGDH-like, ACT_3PGDH-like CD include	0.004

>gnl|CDD|183365 PRK11895, ilvH, acetolactate synthase 3 regulatory subunit; Reviewed

 Score =  221 bits (567), Expect = 8e-71
 Identities = 82/155 (52%), Positives = 111/155 (71%), Gaps = 2/155 (1%)

Query: 79  RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVV 136
           RHT+SV V +E G+++R+AG+F+RRGYNIESL VG   D  L   TIV SG E+V+ Q+ 
Sbjct: 2   RHTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDEQVIEQIT 61

Query: 137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
           +QLNKL++V+KV D++ E HVEREL L+K+        EI+ L DIFRAK+VD++  +LT
Sbjct: 62  KQLNKLIDVLKVVDLTEEAHVERELALVKVRASGENRAEILRLADIFRAKIVDVTPESLT 121

Query: 197 IEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRR 231
           IEVTGD  K+ A    L  +GIKE+ RTG +A+ R
Sbjct: 122 IEVTGDSDKIDAFIDLLRPYGIKEIVRTGVVAIGR 156

Length = 161

>gnl|CDD|214364 CHL00100, ilvH, acetohydroxyacid synthase small subunit

 Score =  214 bits (546), Expect = 1e-67
 Identities = 91/168 (54%), Positives = 134/168 (79%)

Query: 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQ 374
           HTLS+LV +  GVL  + G+ +RRG+NI+SLAVGPAE++G+S IT VVPG D +I +L +
Sbjct: 3   HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRTIEQLTK 62

Query: 375 LLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITL 434
            L+KL+++ +VQDIT++P  EREL+LIKI VN+  R ++L+IA+IFRA+ VD+S+ ++ L
Sbjct: 63  QLYKLVNILKVQDITNIPCVERELMLIKINVNSQTRPEILEIAQIFRAKVVDLSEESLIL 122

Query: 435 ELTGDLNKIIALQRLLEPYGICEVARTGRVALVRESGVDSTYLRGYPL 482
           E+TGD  KI+A+++LLE +GI E+ARTG++AL+RES V++ YLR    
Sbjct: 123 EVTGDPGKIVAIEQLLEKFGIIEIARTGKIALIRESKVNTEYLRYISE 170

Length = 174

>gnl|CDD|214364 CHL00100, ilvH, acetohydroxyacid synthase small subunit

 Score =  209 bits (534), Expect = 7e-66
 Identities = 96/157 (61%), Positives = 125/157 (79%), Gaps = 2/157 (1%)

Query: 78  KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQV 135
            +HT+SV V DESG++ RIAG+FARRG+NIESLAVG    K +   T+VV G +R + Q+
Sbjct: 1   MKHTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRTIEQL 60

Query: 136 VEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHAL 195
            +QL KLVN++KV+DI+N P VERELMLIK+N ++ T PEI+ +  IFRAKVVD+SE +L
Sbjct: 61  TKQLYKLVNILKVQDITNIPCVERELMLIKINVNSQTRPEILEIAQIFRAKVVDLSEESL 120

Query: 196 TIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRRE 232
            +EVTGDPGK+VA+++ L KFGI E+ARTGKIAL RE
Sbjct: 121 ILEVTGDPGKIVAIEQLLEKFGIIEIARTGKIALIRE 157

Length = 174

>gnl|CDD|183365 PRK11895, ilvH, acetolactate synthase 3 regulatory subunit; Reviewed

 Score =  202 bits (516), Expect = 3e-63
 Identities = 78/158 (49%), Positives = 108/158 (68%)

Query: 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQ 374
           HTLS+LV N PGVL+ V G+ SRRGYNI+SL VGP E  GLS +T V  G ++ I ++ +
Sbjct: 3   HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDEQVIEQITK 62

Query: 375 LLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITL 434
            L+KLID+ +V D+T     EREL L+K+  +   R ++L +A IFRA+ VDV+  ++T+
Sbjct: 63  QLNKLIDVLKVVDLTEEAHVERELALVKVRASGENRAEILRLADIFRAKIVDVTPESLTI 122

Query: 435 ELTGDLNKIIALQRLLEPYGICEVARTGRVALVRESGV 472
           E+TGD +KI A   LL PYGI E+ RTG VA+ R   +
Sbjct: 123 EVTGDSDKIDAFIDLLRPYGIKEIVRTGVVAIGRGEKI 160

Length = 161

>gnl|CDD|129225 TIGR00119, acolac_sm, acetolactate synthase, small subunit

 Score =  184 bits (470), Expect = 1e-56
 Identities = 80/156 (51%), Positives = 107/156 (68%), Gaps = 2/156 (1%)

Query: 79  RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVV 136
           RH +SV V +E G+++R+AG+F RRG+NIESL VG   D  L   TIVV G ++VL Q+ 
Sbjct: 1   RHILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGDDKVLEQIT 60

Query: 137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
           +QLNKLV+VIKV D++    VEREL L+K++       EI+ L +IFR ++VD+S  + T
Sbjct: 61  KQLNKLVDVIKVSDLTESAIVERELCLVKVSAPGEGRDEIIRLTNIFRGRIVDVSPDSYT 120

Query: 197 IEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRRE 232
           +EVTGD  K+ A    L  FGIKE+ARTGK AL R 
Sbjct: 121 VEVTGDSDKIDAFLELLRPFGIKEVARTGKTALSRG 156

Acetolactate synthase is a heterodimeric thiamine pyrophosphate enzyme with large and small subunits. One of the three isozymes in E. coli K12 contains a frameshift in the large subunit gene and is not expressed. acetohydroxyacid synthase is a synonym [Amino acid biosynthesis, Pyruvate family]. Length = 157

>gnl|CDD|223517 COG0440, IlvH, Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

 Score =  183 bits (466), Expect = 7e-56
 Identities = 81/158 (51%), Positives = 113/158 (71%), Gaps = 2/158 (1%)

Query: 77  VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQ 134
             R  +S+ V +E G+++R+ G+F+RRGYNIESL VG      L   TIVVSG E+VL Q
Sbjct: 2   PMRRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSGDEQVLEQ 61

Query: 135 VVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHA 194
           +++QLNKL++V+KV D+++EPHVEREL LIK++ + S   EI  + +IFRA VVD+S  +
Sbjct: 62  IIKQLNKLIDVLKVLDLTSEPHVERELALIKVSAEGSERGEIARITEIFRASVVDVSPES 121

Query: 195 LTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRRE 232
           LTIE+TGD  K+ A  R L  +GI E+ARTG +A+ R 
Sbjct: 122 LTIELTGDEEKIEAFIRLLRPYGIIEIARTGVVAMSRG 159

Length = 163

>gnl|CDD|223517 COG0440, IlvH, Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

 Score =  171 bits (436), Expect = 2e-51
 Identities = 83/158 (52%), Positives = 109/158 (68%)

Query: 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKL 372
               LS+LV N PGVL+ VTG+ SRRGYNI+SL VGP E  GLS IT VV G ++ + ++
Sbjct: 3   MRRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSGDEQVLEQI 62

Query: 373 VQLLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTI 432
           ++ L+KLID+ +V D+T  P  EREL LIK++   + R ++  I +IFRA  VDVS  ++
Sbjct: 63  IKQLNKLIDVLKVLDLTSEPHVERELALIKVSAEGSERGEIARITEIFRASVVDVSPESL 122

Query: 433 TLELTGDLNKIIALQRLLEPYGICEVARTGRVALVRES 470
           T+ELTGD  KI A  RLL PYGI E+ARTG VA+ R  
Sbjct: 123 TIELTGDEEKIEAFIRLLRPYGIIEIARTGVVAMSRGP 160

Length = 163

>gnl|CDD|129225 TIGR00119, acolac_sm, acetolactate synthase, small subunit

 Score =  167 bits (424), Expect = 8e-50
 Identities = 74/156 (47%), Positives = 104/156 (66%)

Query: 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQ 374
           H LS+LV N PGVL+ V G+ +RRG+NI+SL VGP E   LS +T VV G D+ + ++ +
Sbjct: 2   HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGDDKVLEQITK 61

Query: 375 LLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITL 434
            L+KL+D+ +V D+T     EREL L+K++     R +++ +  IFR R VDVS  + T+
Sbjct: 62  QLNKLVDVIKVSDLTESAIVERELCLVKVSAPGEGRDEIIRLTNIFRGRIVDVSPDSYTV 121

Query: 435 ELTGDLNKIIALQRLLEPYGICEVARTGRVALVRES 470
           E+TGD +KI A   LL P+GI EVARTG+ AL R  
Sbjct: 122 EVTGDSDKIDAFLELLRPFGIKEVARTGKTALSRGP 157

Acetolactate synthase is a heterodimeric thiamine pyrophosphate enzyme with large and small subunits. One of the three isozymes in E. coli K12 contains a frameshift in the large subunit gene and is not expressed. acetohydroxyacid synthase is a synonym [Amino acid biosynthesis, Pyruvate family]. Length = 157

>gnl|CDD|204463 pfam10369, ALS_ss_C, Small subunit of acetolactate synthase

 Score =  109 bits (274), Expect = 3e-29
 Identities = 39/75 (52%), Positives = 49/75 (65%)

Query: 395 ERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLEPYG 454
           EREL L+K+      R ++L IA IFRA+ VDV+  + T+ELTGD  KI A   LL P+G
Sbjct: 1   ERELALVKVRATGETRAEILRIADIFRAKIVDVTPDSYTIELTGDPEKIDAFIDLLRPFG 60

Query: 455 ICEVARTGRVALVRE 469
           I EV RTG VA+ R 
Sbjct: 61  ILEVVRTGVVAIARG 75

ALS_ss_C is the C-terminal half of a family of proteins which are the small subunits of acetolactate synthase. Acetolactate synthase is a tetrameric enzyme, containing probably two large and two small subunits, which catalyzes the first step in branched-chain amino acid biosynthesis. This reaction is sensitive to certain herbicides. Length = 75

>gnl|CDD|153150 cd04878, ACT_AHAS, N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

 Score =  106 bits (267), Expect = 3e-28
 Identities = 40/72 (55%), Positives = 55/72 (76%), Gaps = 2/72 (2%)

Query: 80  HTISVFVGDESGIINRIAGVFARRGYNIESLAVGL--NVDKALFTIVVSGTERVLRQVVE 137
           HT+SV V +E G++NRI+G+FARRG+NIESL VG   +   +  TIVV G + V+ Q+V+
Sbjct: 1   HTLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDDDVIEQIVK 60

Query: 138 QLNKLVNVIKVE 149
           QLNKLV+V+KV 
Sbjct: 61  QLNKLVDVLKVS 72

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|204463 pfam10369, ALS_ss_C, Small subunit of acetolactate synthase

 Score =  105 bits (266), Expect = 4e-28
 Identities = 36/75 (48%), Positives = 49/75 (65%)

Query: 158 ERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFG 217
           EREL L+K+     T  EI+ + DIFRAK+VD++  + TIE+TGDP K+ A    L  FG
Sbjct: 1   ERELALVKVRATGETRAEILRIADIFRAKIVDVTPDSYTIELTGDPEKIDAFIDLLRPFG 60

Query: 218 IKELARTGKIALRRE 232
           I E+ RTG +A+ R 
Sbjct: 61  ILEVVRTGVVAIARG 75

ALS_ss_C is the C-terminal half of a family of proteins which are the small subunits of acetolactate synthase. Acetolactate synthase is a tetrameric enzyme, containing probably two large and two small subunits, which catalyzes the first step in branched-chain amino acid biosynthesis. This reaction is sensitive to certain herbicides. Length = 75

>gnl|CDD|153150 cd04878, ACT_AHAS, N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

 Score = 99.1 bits (248), Expect = 1e-25
 Identities = 39/72 (54%), Positives = 55/72 (76%)

Query: 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQ 374
           HTLS+LV N PGVLN ++G+ +RRG+NI+SL VGP E  G+S IT VV G D+ I ++V+
Sbjct: 1   HTLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDDDVIEQIVK 60

Query: 375 LLHKLIDLHEVQ 386
            L+KL+D+ +V 
Sbjct: 61  QLNKLVDVLKVS 72

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|222334 pfam13710, ACT_5, ACT domain

 Score = 60.6 bits (148), Expect = 5e-12
 Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 2/63 (3%)

Query: 88  DESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNV 145
           D  G++ RI  V  RRG+NI SL +    D  +   T+ V G ER +  +V QL KL++V
Sbjct: 1   DRPGVLERILRVVRRRGFNIASLNMSTTEDDGVARLTLTVEGHERPVDLLVNQLEKLIDV 60

Query: 146 IKV 148
           ++V
Sbjct: 61  LEV 63

ACT domains bind to amino acids and regulate associated enzyme domains. These ACT domains are found at the C-terminus of the RelA protein. Length = 63

>gnl|CDD|222334 pfam13710, ACT_5, ACT domain

 Score = 54.9 bits (133), Expect = 6e-10
 Identities = 26/63 (41%), Positives = 38/63 (60%)

Query: 323 NTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDL 382
           + PGVL  +  V+ RRG+NI SL +   E +G++ +T  V G +  +  LV  L KLID+
Sbjct: 1   DRPGVLERILRVVRRRGFNIASLNMSTTEDDGVARLTLTVEGHERPVDLLVNQLEKLIDV 60

Query: 383 HEV 385
            EV
Sbjct: 61  LEV 63

ACT domains bind to amino acids and regulate associated enzyme domains. These ACT domains are found at the C-terminus of the RelA protein. Length = 63

>gnl|CDD|180675 PRK06737, PRK06737, acetolactate synthase 1 regulatory subunit; Validated

 Score = 49.7 bits (118), Expect = 5e-08
 Identities = 26/75 (34%), Positives = 43/75 (57%)

Query: 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLV 373
           SHT S++++N P VL  ++G+ +RRGY I SL +   +  G+S +      T+     LV
Sbjct: 2   SHTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTENEATLLV 61

Query: 374 QLLHKLIDLHEVQDI 388
             L KLI++ +V  +
Sbjct: 62  SQLKKLINVLQVNKL 76

Length = 76

>gnl|CDD|190133 pfam01842, ACT, ACT domain

 Score = 47.0 bits (112), Expect = 4e-07
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 80  HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA-LFTIVVSGTERVLRQVVEQ 138
             + V V D  G++  + G  A RG NIES++   + DKA +  IVV   E  L   +E 
Sbjct: 1   TVLEVGVPDRPGLLAEVFGALADRGINIESISQSTSGDKAGIVFIVVVVDEEDLEAALEA 60

Query: 139 LNKLVN 144
           L KL+ 
Sbjct: 61  LKKLLG 66

This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5. Length = 66

>gnl|CDD|180675 PRK06737, PRK06737, acetolactate synthase 1 regulatory subunit; Validated

 Score = 47.0 bits (111), Expect = 5e-07
 Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 80  HTISVFVGDESGIINRIAGVFARRGYNIESLAVG--LNVDKALFTIVVSGTERVLRQVVE 137
           HT S+ + ++  ++ RI+G+FARRGY I SL +        +   +    TE     +V 
Sbjct: 3   HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTENEATLLVS 62

Query: 138 QLNKLVNVIKVEDI 151
           QL KL+NV++V  +
Sbjct: 63  QLKKLINVLQVNKL 76

Length = 76

>gnl|CDD|190133 pfam01842, ACT, ACT domain

 Score = 45.8 bits (109), Expect = 8e-07
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQ 374
             L + V + PG+L  V G ++ RG NI+S++   +  +       VV   +E +   ++
Sbjct: 1   TVLEVGVPDRPGLLAEVFGALADRGINIESISQSTSGDKAGIVFIVVVVD-EEDLEAALE 59

Query: 375 LLHKLID 381
            L KL+ 
Sbjct: 60  ALKKLLG 66

This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5. Length = 66

>gnl|CDD|153139 cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 82  ISVFVGDESGIINRIAGVFARRGYNIESLAVG--LNVDKALFTIVVSGTERVLRQVVEQL 139
           ++V   D  G++ ++  V A  G NI S+      +  +A   IVV G    L +++E L
Sbjct: 1   LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDGD-LEKLLEAL 59

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-prephenate dehydratase enzyme (P-protein), respectively. Aspartokinases typically consist of two C-terminal ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. ACT domain repeats have been shown to have nonequivalent ligand-binding sites with complex regulatory patterns such as those seen in the bifunctional enzyme, aspartokinase-homoserine dehydrogenase (ThrA). In other enzymes, such as phenylalanine hydroxylases, the ACT domain appears to function as a flexible small module providing allosteric regulation via transmission of conformational changes, these conformational changes are not necessarily initiated by regulatory ligand binding at the ACT domain itself. ACT domains are present either singularly, N- or C-terminal, or in pairs present C-terminal or between two catalytic domains. Unique to cyanobacteria are four ACT domains C-terminal to an aspartokinase domain. A few proteins are composed almost entirely of ACT domain repeats as seen in the four ACT domain protein, the ACR protein, found in higher plants; and the two ACT domain protein, the glycine cleavage system transcriptional repressor (GcvR) protein, found in some bacteria. Also seen are single ACT domain proteins similar to the Streptococcus pneumoniae ACT domain protein (uncharacterized pdb structure 1ZPV) found in both bacteria and archaea. Purportedly, the ACT domain is an evolutionarily mobile ligand binding regulatory module that has been fused to different enzymes at various times. Length = 60

>gnl|CDD|153139 cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLL 376
           L++   + PG+L  V  V++  G NI S+    +   G + I  VV G  + + KL++ L
Sbjct: 1   LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDGD-LEKLLEAL 59

Query: 377 H 377
            
Sbjct: 60  E 60

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-prephenate dehydratase enzyme (P-protein), respectively. Aspartokinases typically consist of two C-terminal ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. ACT domain repeats have been shown to have nonequivalent ligand-binding sites with complex regulatory patterns such as those seen in the bifunctional enzyme, aspartokinase-homoserine dehydrogenase (ThrA). In other enzymes, such as phenylalanine hydroxylases, the ACT domain appears to function as a flexible small module providing allosteric regulation via transmission of conformational changes, these conformational changes are not necessarily initiated by regulatory ligand binding at the ACT domain itself. ACT domains are present either singularly, N- or C-terminal, or in pairs present C-terminal or between two catalytic domains. Unique to cyanobacteria are four ACT domains C-terminal to an aspartokinase domain. A few proteins are composed almost entirely of ACT domain repeats as seen in the four ACT domain protein, the ACR protein, found in higher plants; and the two ACT domain protein, the glycine cleavage system transcriptional repressor (GcvR) protein, found in some bacteria. Also seen are single ACT domain proteins similar to the Streptococcus pneumoniae ACT domain protein (uncharacterized pdb structure 1ZPV) found in both bacteria and archaea. Purportedly, the ACT domain is an evolutionarily mobile ligand binding regulatory module that has been fused to different enzymes at various times. Length = 60

>gnl|CDD|153155 cd04883, ACT_AcuB, C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

 Score = 37.2 bits (87), Expect = 0.001
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEG 354
           V + PG L  +  +   RG NI S+ V P+++E 
Sbjct: 8   VPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEED 41

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|222030 pfam13291, ACT_4, ACT domain

 Score = 36.3 bits (85), Expect = 0.003
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 4/72 (5%)

Query: 81  TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK---ALFTIVVSGTERVLRQVVE 137
            + +   D  G++  I  V +    NI S+      +       T+ V   E  L +++ 
Sbjct: 6   DLEIEAIDRPGLLADITTVISNEKANILSVNAESKDNGIATINLTLEVKDLEH-LARLIR 64

Query: 138 QLNKLVNVIKVE 149
           +L K+  VI VE
Sbjct: 65  KLRKIPGVISVE 76

ACT domains bind to amino acids and regulate associated enzyme domains. These ACT domains are found at the C-terminus of the RelA protein. Length = 77

>gnl|CDD|236174 PRK08178, PRK08178, acetolactate synthase 1 regulatory subunit; Reviewed

 Score = 36.6 bits (85), Expect = 0.003
 Identities = 23/75 (30%), Positives = 46/75 (61%), Gaps = 5/75 (6%)

Query: 86  VGDESGIINRIAGVFARRGYNIES---LAVGLNVDKALFTIVVSGTERVLRQVVEQLNKL 142
           V +  G+++ + G+FARR +N+E    L +  + DK+   ++V+  +R L Q++ Q+ KL
Sbjct: 15  VRNHPGVMSHVCGLFARRAFNVEGILCLPIQ-DGDKSRIWLLVNDDQR-LEQMISQIEKL 72

Query: 143 VNVIKVEDISNEPHV 157
            +V+KV    ++P +
Sbjct: 73  EDVLKVRRNQSDPTM 87

Length = 96

>gnl|CDD|236174 PRK08178, PRK08178, acetolactate synthase 1 regulatory subunit; Reviewed

 Score = 36.6 bits (85), Expect = 0.003
 Identities = 20/71 (28%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQL 375
            L + V N PGV++ V G+ +RR +N++ +   P +    S I  +V   D+ + +++  
Sbjct: 10  ILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLV-NDDQRLEQMISQ 68

Query: 376 LHKLIDLHEVQ 386
           + KL D+ +V+
Sbjct: 69  IEKLEDVLKVR 79

Length = 96

>gnl|CDD|153151 cd04879, ACT_3PGDH-like, ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

 Score = 35.5 bits (83), Expect = 0.004
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 88  DESGIINRIAGVFARRGYNIESLAVGLN--VDKALFTIVVSGTERVLRQVVEQLNKLVNV 145
           D  G+I ++  +    G NI ++ VG       A   + V     V  +V+E+L  L  +
Sbjct: 8   DVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSP--VPEEVLEELKALPGI 65

Query: 146 IKVEDI 151
           I+V  I
Sbjct: 66  IRVRLI 71

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-exposed active site cleft. This CD also includes the C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillus, and Treponema species. LSD enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in E. coli, and other Enterobacteriales, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 71

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	484
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	100.0
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	100.0
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	100.0
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	100.0
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	100.0
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	100.0
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	100.0
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	100.0
KOG2663	309	consensus Acetolactate synthase, small subunit [Am	100.0
KOG2663	309	consensus Acetolactate synthase, small subunit [Am	100.0
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	99.97
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	99.97
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	99.96
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	99.96
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	99.96
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	99.95
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	99.95
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	99.93
PF10369	75	ALS_ss_C: Small subunit of acetolactate synthase;	99.92
PF10369	75	ALS_ss_C: Small subunit of acetolactate synthase;	99.92
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	99.88
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	99.83
COG3978	86	Acetolactate synthase (isozyme II), small (regulat	99.08
COG3978	86	Acetolactate synthase (isozyme II), small (regulat	98.9
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.83
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	98.81
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.75
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	98.67
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	98.61
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	98.59
PRK06349	426	homoserine dehydrogenase; Provisional	98.58
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	98.53
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	98.49
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	98.45
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	98.43
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	98.4
PRK06349	426	homoserine dehydrogenase; Provisional	98.4
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	98.4
PRK08577	136	hypothetical protein; Provisional	98.37
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	98.3
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	98.29
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	98.28
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	98.27
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	98.25
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	98.23
PRK08577	136	hypothetical protein; Provisional	98.18
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	98.18
PRK11589	190	gcvR glycine cleavage system transcriptional repre	98.16
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	98.14
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	98.14
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	98.12
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	98.11
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	98.09
PRK00194	90	hypothetical protein; Validated	98.07
PRK00194	90	hypothetical protein; Validated	98.03
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	98.01
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	98.01
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	98.01
PRK04435	147	hypothetical protein; Provisional	97.98
PRK04435	147	hypothetical protein; Provisional	97.97
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	97.93
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	97.9
cd02116	60	ACT ACT domains are commonly involved in specifica	97.9
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	97.89
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	97.88
COG4747	142	ACT domain-containing protein [General function pr	97.87
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.87
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	97.84
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	97.84
PRK07431	587	aspartate kinase; Provisional	97.82
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	97.82
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	97.81
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	97.78
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	97.77
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	97.77
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	97.73
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	97.71
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	97.7
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	97.68
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	97.68
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	97.64
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	97.59
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	97.56
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	97.52
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	97.5
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	97.49
cd02116	60	ACT ACT domains are commonly involved in specifica	97.46
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	97.44
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	97.44
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	97.42
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	97.42
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	97.39
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	97.38
COG4492	150	PheB ACT domain-containing protein [General functi	97.36
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	97.35
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	97.34
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	97.31
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	97.29
PRK05092	931	PII uridylyl-transferase; Provisional	97.27
COG4492	150	PheB ACT domain-containing protein [General functi	97.25
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	97.25
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	97.23
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	97.17
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	97.17
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	97.17
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	97.15
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	97.1
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	97.03
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	97.01
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	96.98
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	96.96
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	96.94
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	96.94
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	96.92
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	96.86
COG4747	142	ACT domain-containing protein [General function pr	96.84
PRK03381	774	PII uridylyl-transferase; Provisional	96.83
COG1707	218	ACT domain-containing protein [General function pr	96.82
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	96.69
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	96.69
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	96.66
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	96.66
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	96.66
PRK05007	884	PII uridylyl-transferase; Provisional	96.61
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	96.59
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	96.55
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	96.54
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	96.53
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	96.53
PRK00275	895	glnD PII uridylyl-transferase; Provisional	96.52
PRK03059	856	PII uridylyl-transferase; Provisional	96.52
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	96.5
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	96.29
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	96.28
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	96.23
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	96.2
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	96.18
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	96.15
COG1707	218	ACT domain-containing protein [General function pr	96.07
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	96.05
PRK07334	403	threonine dehydratase; Provisional	96.03
PRK07431	587	aspartate kinase; Provisional	96.02
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	96.0
PRK11589	190	gcvR glycine cleavage system transcriptional repre	95.96
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	95.96
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	95.94
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	95.92
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	95.86
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	95.85
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	95.82
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	95.76
PRK11899	279	prephenate dehydratase; Provisional	95.69
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	95.61
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	95.59
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	95.55
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	95.53
PRK04374	869	PII uridylyl-transferase; Provisional	95.5
COG2150	167	Predicted regulator of amino acid metabolism, cont	95.43
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	95.3
PRK07334	403	threonine dehydratase; Provisional	95.29
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	95.27
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	95.27
PRK06382	406	threonine dehydratase; Provisional	95.24
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	95.2
PRK11899	279	prephenate dehydratase; Provisional	95.13
PRK06635	404	aspartate kinase; Reviewed	95.12
PRK08198	404	threonine dehydratase; Provisional	95.09
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	95.01
cd04935	75	ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AK	94.97
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	94.7
cd04913	75	ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-	94.7
PRK06382	406	threonine dehydratase; Provisional	94.67
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	94.66
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	94.49
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	94.4
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	94.38
PRK06545	359	prephenate dehydrogenase; Validated	94.38
COG2061	170	ACT-domain-containing protein, predicted allosteri	94.33
PRK06545	359	prephenate dehydrogenase; Validated	94.3
cd04913	75	ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-	94.28
cd04912	75	ACT_AKiii-LysC-EC-like_1 ACT domains located C-ter	94.22
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	94.22
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	93.98
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	93.92
PRK11898	283	prephenate dehydratase; Provisional	93.84
cd04932	75	ACT_AKiii-LysC-EC_1 ACT domains located C-terminal	93.83
cd04935	75	ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AK	93.8
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	93.73
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	93.68
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	93.67
PRK08198	404	threonine dehydratase; Provisional	93.61
TIGR01270	464	Trp_5_monoox tryptophan 5-monooxygenase, tetrameri	93.55
cd04891	61	ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-	93.49
COG2061	170	ACT-domain-containing protein, predicted allosteri	93.46
PRK08818	370	prephenate dehydrogenase; Provisional	93.36
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	93.35
cd04891	61	ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-	93.11
PRK10622	386	pheA bifunctional chorismate mutase/prephenate deh	93.1
PRK03059	856	PII uridylyl-transferase; Provisional	92.88
cd04934	73	ACT_AK-Hom3_1 CT domains located C-terminal to the	92.87
PRK08818	370	prephenate dehydrogenase; Provisional	92.86
PRK12483	521	threonine dehydratase; Reviewed	92.83
cd04912	75	ACT_AKiii-LysC-EC-like_1 ACT domains located C-ter	92.75
PRK10622	386	pheA bifunctional chorismate mutase/prephenate deh	92.73
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	92.73
PRK11898	283	prephenate dehydratase; Provisional	92.69
cd04932	75	ACT_AKiii-LysC-EC_1 ACT domains located C-terminal	92.61
cd04890	62	ACT_AK-like_1 ACT domains found C-terminal to the	92.51
cd04919	66	ACT_AK-Hom3_2 ACT domains located C-terminal to th	92.42
cd04936	63	ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-	92.25
PRK05092	931	PII uridylyl-transferase; Provisional	92.21
PRK12483	521	threonine dehydratase; Reviewed	92.01
COG2150	167	Predicted regulator of amino acid metabolism, cont	91.72
PRK02047	91	hypothetical protein; Provisional	91.65
TIGR01268	436	Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetra	91.63
cd04890	62	ACT_AK-like_1 ACT domains found C-terminal to the	91.53
PLN02317	382	arogenate dehydratase	91.42
PRK15385	225	magnesium transport protein MgtC; Provisional	91.32
cd04934	73	ACT_AK-Hom3_1 CT domains located C-terminal to the	91.29
cd04922	66	ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctiona	91.27
PRK06635	404	aspartate kinase; Reviewed	91.23
TIGR01268	436	Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetra	91.15
COG3830	90	ACT domain-containing protein [Signal transduction	91.01
cd04924	66	ACT_AK-Arch_2 ACT domains of a monofunctional aspa	90.98
PLN02550	591	threonine dehydratase	90.94
cd04933	78	ACT_AK1-AT_1 ACT domains located C-terminal to the	90.91
PRK08210	403	aspartate kinase I; Reviewed	90.78
PRK03381	774	PII uridylyl-transferase; Provisional	90.73
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	90.72
TIGR01270	464	Trp_5_monoox tryptophan 5-monooxygenase, tetrameri	90.41
cd04916	66	ACT_AKiii-YclM-BS_2 ACT domains located C-terminal	90.22
PLN02550	591	threonine dehydratase	89.95
cd04936	63	ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-	89.84
PRK05007	884	PII uridylyl-transferase; Provisional	89.83
PLN02317	382	arogenate dehydratase	89.65
COG0527	447	LysC Aspartokinases [Amino acid transport and meta	89.04
PRK08210	403	aspartate kinase I; Reviewed	88.59
PRK01759	854	glnD PII uridylyl-transferase; Provisional	88.57
cd04933	78	ACT_AK1-AT_1 ACT domains located C-terminal to the	88.39
cd04892	65	ACT_AK-like_2 ACT domains C-terminal to the cataly	88.36
PRK00275	895	glnD PII uridylyl-transferase; Provisional	88.26
TIGR00657	441	asp_kinases aspartate kinase. The Lys-sensitive en	87.64
cd04914	67	ACT_AKi-DapG-BS_1 ACT domains of the diaminopimela	87.61
PRK08639	420	threonine dehydratase; Validated	87.54
PRK15385	225	magnesium transport protein MgtC; Provisional	87.48
COG3830	90	ACT domain-containing protein [Signal transduction	87.48
cd04919	66	ACT_AK-Hom3_2 ACT domains located C-terminal to th	87.4
cd04924	66	ACT_AK-Arch_2 ACT domains of a monofunctional aspa	87.35
PF04350	144	PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.	87.29
PRK08526	403	threonine dehydratase; Provisional	87.28
cd04916	66	ACT_AKiii-YclM-BS_2 ACT domains located C-terminal	87.15
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	87.0
PRK00907	92	hypothetical protein; Provisional	86.87
cd04892	65	ACT_AK-like_2 ACT domains C-terminal to the cataly	86.78
COG0527	447	LysC Aspartokinases [Amino acid transport and meta	86.2
TIGR02079	409	THD1 threonine dehydratase. This model represents	86.16
cd04918	65	ACT_AK1-AT_2 ACT domains located C-terminal to the	85.85
cd04922	66	ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctiona	85.63
PRK09034	454	aspartate kinase; Reviewed	85.52
PRK04374	869	PII uridylyl-transferase; Provisional	85.49
PF09383	76	NIL: NIL domain; InterPro: IPR018449 This domain i	85.18
cd04911	76	ACT_AKiii-YclM-BS_1 ACT domains located C-terminal	84.8
PRK01759	854	glnD PII uridylyl-transferase; Provisional	84.75
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	84.59
cd04923	63	ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-	84.41
PRK09084	448	aspartate kinase III; Validated	84.33
PRK04998	88	hypothetical protein; Provisional	84.16
cd04868	60	ACT_AK-like ACT domains C-terminal to the catalyti	84.01
PLN02551	521	aspartokinase	83.92
cd04918	65	ACT_AK1-AT_2 ACT domains located C-terminal to the	83.38
cd04868	60	ACT_AK-like ACT domains C-terminal to the catalyti	83.31
cd04923	63	ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-	83.1
PRK09084	448	aspartate kinase III; Validated	83.05
PF09383	76	NIL: NIL domain; InterPro: IPR018449 This domain i	82.66
TIGR00657	441	asp_kinases aspartate kinase. The Lys-sensitive en	82.38
PRK09977	215	putative Mg(2+) transport ATPase; Provisional	82.16
PF04350	144	PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.	81.88
PRK09034	454	aspartate kinase; Reviewed	81.78
cd04914	67	ACT_AKi-DapG-BS_1 ACT domains of the diaminopimela	81.46
PRK14434	92	acylphosphatase; Provisional	81.41
PRK06291	465	aspartate kinase; Provisional	81.4
cd04921	80	ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunc	81.38
PRK14434	92	acylphosphatase; Provisional	81.2
TIGR01124	499	ilvA_2Cterm threonine ammonia-lyase, biosynthetic,	81.16
cd04915	66	ACT_AK-Ectoine_2 ACT domains located C-terminal to	80.98
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	80.81
PRK08961	861	bifunctional aspartate kinase/diaminopimelate deca	80.8
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	80.63
PLN02551	521	aspartokinase	80.62
cd04937	64	ACT_AKi-DapG-BS_2 ACT domains of the diaminopimela	80.43
cd04937	64	ACT_AKi-DapG-BS_2 ACT domains of the diaminopimela	80.24

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=100.00  E-value=7.6e-54  Score=400.99  Aligned_cols=170  Identities=54%  Similarity=0.881  Sum_probs=166.4

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEeccCCch
Q 011491          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLP  392 (484)
Q Consensus       313 ~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dlt~~~  392 (484)
                      |+|+|+++++|+||+|+||+++|+||||||+||++++++++++|||||+++++++.++||.+||+||+||++|.++++.+
T Consensus         1 m~~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~~~~~ieqL~kQL~KLidVl~V~~~~~~~   80 (174)
T CHL00100          1 MKHTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRTIEQLTKQLYKLVNILKVQDITNIP   80 (174)
T ss_pred             CeEEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEECCHHHHHHHHHHHHHHhHhhEEEecCCcc
Confidence            58999999999999999999999999999999999999999999999999999888999999999999999999999999


Q ss_pred             hHHHhhheeEEecCccchHHHHHHHHHcCcEEEEecCCEEEEEEeCCHHHHHHHHHHhccCCcEEEeecceeEeecCCCc
Q 011491          393 FAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLEPYGICEVARTGRVALVRESGV  472 (484)
Q Consensus       393 ~V~REL~LIKV~~~~~~r~eI~~la~ifrakIVDvs~~si~iE~TG~~~Kidafi~lL~pyGIlEvaRTG~vAl~Rg~~~  472 (484)
                      +|+||||||||++++++|.+|++++++|||||||++++++++|+||+++|+++|+++|+||||+|++|||++||.|++..
T Consensus        81 ~v~rEl~LiKv~~~~~~r~ei~~~~~~f~a~ivdv~~~~~~ie~tG~~~ki~a~~~~l~~~gi~e~~RtG~val~r~~~~  160 (174)
T CHL00100         81 CVERELMLIKINVNSQTRPEILEIAQIFRAKVVDLSEESLILEVTGDPGKIVAIEQLLEKFGIIEIARTGKIALIRESKV  160 (174)
T ss_pred             ceeeEEEEEEEecCCcCHHHHHHHHHHhCCEEEEecCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEccCceeEecCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             cccccccCCC
Q 011491          473 DSTYLRGYPL  482 (484)
Q Consensus       473 ~~~~l~~~~~  482 (484)
                      .++||+.||.
T Consensus       161 ~~~~l~~~~~  170 (174)
T CHL00100        161 NTEYLRYISE  170 (174)
T ss_pred             hHHHHHhhhh
Confidence            8899998873

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=100.00  E-value=3.2e-53  Score=392.52  Aligned_cols=159  Identities=49%  Similarity=0.765  Sum_probs=156.6

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEeccCCch
Q 011491          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLP  392 (484)
Q Consensus       313 ~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dlt~~~  392 (484)
                      |+|+|+++++|+||+|+||+++|+||||||+||+++++++++++||||+++||++.++|++|||+||+||++|.++++++
T Consensus         1 m~~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~~~~i~qi~kQl~KLidV~~V~~~~~~~   80 (161)
T PRK11895          1 MRHTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDEQVIEQITKQLNKLIDVLKVVDLTEEA   80 (161)
T ss_pred             CeEEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECCHHHHHHHHHHHhccccEEEEEecCCcc
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHhhheeEEecCccchHHHHHHHHHcCcEEEEecCCEEEEEEeCCHHHHHHHHHHhccCCcEEEeecceeEeecCCC
Q 011491          393 FAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLEPYGICEVARTGRVALVRESG  471 (484)
Q Consensus       393 ~V~REL~LIKV~~~~~~r~eI~~la~ifrakIVDvs~~si~iE~TG~~~Kidafi~lL~pyGIlEvaRTG~vAl~Rg~~  471 (484)
                      +|+|||+||||++++.+|.+|++++++|||+|||++++++++|+||+++||++|+++|+||||+|++|||++||.||+.
T Consensus        81 ~v~rEl~LiKv~~~~~~r~~i~~i~~~f~a~ivdv~~~~~~iE~tG~~~ki~~~~~~l~~~gi~e~~RTG~~al~r~~~  159 (161)
T PRK11895         81 HVERELALVKVRASGENRAEILRLADIFRAKIVDVTPESLTIEVTGDSDKIDAFIDLLRPYGIKEIVRTGVVAIGRGEK  159 (161)
T ss_pred             hhheEEEEEEEECCcccHHHHHHHHHHhCCEEEEecCCEEEEEEeCCHHHHHHHHHHhhhcCCEEEEccCceeEEcCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999974

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=100.00  E-value=1.2e-52  Score=387.26  Aligned_cols=157  Identities=47%  Similarity=0.761  Sum_probs=154.8

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEeccCCchh
Q 011491          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPF  393 (484)
Q Consensus       314 ~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dlt~~~~  393 (484)
                      +|+|+++++|+||+|+||+++|+||||||+||+++++++++++||||+++|+++.++||.|||+||+||++|.+++++++
T Consensus         1 ~~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~d~~~i~qi~kQl~Kli~V~~V~~~~~~~~   80 (157)
T TIGR00119         1 RHILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGDDKVLEQITKQLNKLVDVIKVSDLTESAI   80 (157)
T ss_pred             CEEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEECCHHHHHHHHHHHhcCccEEEEEecCCCcc
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhheeEEecCccchHHHHHHHHHcCcEEEEecCCEEEEEEeCCHHHHHHHHHHhccCCcEEEeecceeEeecCC
Q 011491          394 AERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLEPYGICEVARTGRVALVRES  470 (484)
Q Consensus       394 V~REL~LIKV~~~~~~r~eI~~la~ifrakIVDvs~~si~iE~TG~~~Kidafi~lL~pyGIlEvaRTG~vAl~Rg~  470 (484)
                      ++||||||||++++++|.+|++++++|||+|||++++++++|+||+++|+|+|+++|+||||+|++|||++||.||.
T Consensus        81 v~rEl~LiKv~~~~~~r~~i~~i~~~f~a~ivdv~~~~~~ie~tG~~~ki~~~~~~l~~~gi~e~~RtG~va~~r~~  157 (157)
T TIGR00119        81 VERELCLVKVSAPGEGRDEIIRLTNIFRGRIVDVSPDSYTVEVTGDSDKIDAFLELLRPFGIKEVARTGKTALSRGP  157 (157)
T ss_pred             eeeEEEEEEEECCccCHHHHHHHHHHhCCEEEEecCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEccCeEEEecCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999983

acetohydroxyacid synthase is a synonym.

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=100.00  E-value=1.5e-52  Score=387.51  Aligned_cols=160  Identities=52%  Similarity=0.792  Sum_probs=157.7

Q ss_pred             ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEeccCCc
Q 011491          312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHL  391 (484)
Q Consensus       312 ~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dlt~~  391 (484)
                      +|+|+|+++|+|+||+|+||+|+|+||||||+||+|++||++++|||||++.||+..+|||+|||+||+||++|.+++++
T Consensus         2 ~m~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g~~~~~EQi~kQL~kLidV~kV~d~~~~   81 (163)
T COG0440           2 PMRRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSGDEQVLEQIIKQLNKLIDVLKVLDLTSE   81 (163)
T ss_pred             CceEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcCCcchHHHHHHHHHhhccceeEEEcCCc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHhhheeEEecCccchHHHHHHHHHcCcEEEEecCCEEEEEEeCCHHHHHHHHHHhccCCcEEEeecceeEeecCCC
Q 011491          392 PFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLEPYGICEVARTGRVALVRESG  471 (484)
Q Consensus       392 ~~V~REL~LIKV~~~~~~r~eI~~la~ifrakIVDvs~~si~iE~TG~~~Kidafi~lL~pyGIlEvaRTG~vAl~Rg~~  471 (484)
                      ++++|||+|+||++++..|.|+.+++++|||+|+||+++++++|+||+++|++||+++|+||||+|++|||.+||.||++
T Consensus        82 ~~veRel~LiKv~~~~~~R~ei~~~~~ifr~~vvDvs~~~~~~eltG~~~ki~afi~~l~~~gi~e~~rtG~~~~~Rg~~  161 (163)
T COG0440          82 PHVERELALIKVSAEGSERGEIARITEIFRASVVDVSPESLTIELTGDEEKIEAFIRLLRPYGIIEIARTGVVAMSRGPK  161 (163)
T ss_pred             chhheeeEEEEEecCccchHHHHHHHHHhCceEEecCcceEEEEEeCChHHHHHHHHHhcccceeEEEeccceeecccCC
Confidence            99999999999999998899999999999999999999999999999999999999999999999999999999999975

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=100.00  E-value=1e-51  Score=382.48  Aligned_cols=157  Identities=52%  Similarity=0.827  Sum_probs=153.2

Q ss_pred             eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChhHHHHHHHHHhcCcceeEEEecCCch
Q 011491           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEP  155 (484)
Q Consensus        78 ~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gde~~veQI~kQL~KLidVikV~dlt~~~  155 (484)
                      |+|+|+++++|+||+|+||+++|+||||||+||+++++++++.  |||+++||++.++|++|||+||+||++|.++++++
T Consensus         1 m~~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~~~~i~qi~kQl~KLidV~~V~~~~~~~   80 (161)
T PRK11895          1 MRHTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDEQVIEQITKQLNKLIDVLKVVDLTEEA   80 (161)
T ss_pred             CeEEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECCHHHHHHHHHHHhccccEEEEEecCCcc
Confidence            5899999999999999999999999999999999999987764  99999999999999999999999999999999999


Q ss_pred             hhhhhheeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecCcC
Q 011491          156 HVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKL  234 (484)
Q Consensus       156 ~V~RELaLiKV~~~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~fGIlE~aRTG~iAl~Rg~~  234 (484)
                      +|+|||+||||++++.+|.+|++++++|||||||++++++++|+||+++||++|+++|+||||+|++|||++||.||..
T Consensus        81 ~v~rEl~LiKv~~~~~~r~~i~~i~~~f~a~ivdv~~~~~~iE~tG~~~ki~~~~~~l~~~gi~e~~RTG~~al~r~~~  159 (161)
T PRK11895         81 HVERELALVKVRASGENRAEILRLADIFRAKIVDVTPESLTIEVTGDSDKIDAFIDLLRPYGIKEIVRTGVVAIGRGEK  159 (161)
T ss_pred             hhheEEEEEEEECCcccHHHHHHHHHHhCCEEEEecCCEEEEEEeCCHHHHHHHHHHhhhcCCEEEEccCceeEEcCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999964

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=100.00  E-value=3.4e-51  Score=377.62  Aligned_cols=155  Identities=52%  Similarity=0.801  Sum_probs=151.4

Q ss_pred             EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChhHHHHHHHHHhcCcceeEEEecCCchh
Q 011491           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPH  156 (484)
Q Consensus        79 khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gde~~veQI~kQL~KLidVikV~dlt~~~~  156 (484)
                      +|+|+++++|+||+|+||+++|+||||||+||+++++++++.  |||++++|++.++|+.|||+||+||++|.+++++++
T Consensus         1 ~~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~d~~~i~qi~kQl~Kli~V~~V~~~~~~~~   80 (157)
T TIGR00119         1 RHILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGDDKVLEQITKQLNKLVDVIKVSDLTESAI   80 (157)
T ss_pred             CEEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEECCHHHHHHHHHHHhcCccEEEEEecCCCcc
Confidence            599999999999999999999999999999999999987764  999999999999999999999999999999999999


Q ss_pred             hhhhheeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecCc
Q 011491          157 VERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREK  233 (484)
Q Consensus       157 V~RELaLiKV~~~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~fGIlE~aRTG~iAl~Rg~  233 (484)
                      |+||||||||++++++|.+|++++++|||||||++++++++|+||+++||++|+++|+||||+|++|||++||.||.
T Consensus        81 v~rEl~LiKv~~~~~~r~~i~~i~~~f~a~ivdv~~~~~~ie~tG~~~ki~~~~~~l~~~gi~e~~RtG~va~~r~~  157 (157)
T TIGR00119        81 VERELCLVKVSAPGEGRDEIIRLTNIFRGRIVDVSPDSYTVEVTGDSDKIDAFLELLRPFGIKEVARTGKTALSRGP  157 (157)
T ss_pred             eeeEEEEEEEECCccCHHHHHHHHHHhCCEEEEecCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEccCeEEEecCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999983

acetohydroxyacid synthase is a synonym.

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=100.00  E-value=2e-51  Score=384.76  Aligned_cols=167  Identities=59%  Similarity=0.877  Sum_probs=159.1

Q ss_pred             eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChhHHHHHHHHHhcCcceeEEEecCCch
Q 011491           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEP  155 (484)
Q Consensus        78 ~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gde~~veQI~kQL~KLidVikV~dlt~~~  155 (484)
                      |+|+|+++++|+||+|+||+++|+||||||+||+++++++++.  |||++.++++.++||.+||+||+||++|+++++++
T Consensus         1 m~~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~~~~~ieqL~kQL~KLidVl~V~~~~~~~   80 (174)
T CHL00100          1 MKHTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRTIEQLTKQLYKLVNILKVQDITNIP   80 (174)
T ss_pred             CeEEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEECCHHHHHHHHHHHHHHhHhhEEEecCCcc
Confidence            5899999999999999999999999999999999999999875  99999999888999999999999999999999999


Q ss_pred             hhhhhheeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecCcCC
Q 011491          156 HVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLG  235 (484)
Q Consensus       156 ~V~RELaLiKV~~~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~fGIlE~aRTG~iAl~Rg~~~  235 (484)
                      +|+||||||||++++++|.||++++++|||||||++++++++|+||+++||++|+++|+||||+|++|||++||.||+..
T Consensus        81 ~v~rEl~LiKv~~~~~~r~ei~~~~~~f~a~ivdv~~~~~~ie~tG~~~ki~a~~~~l~~~gi~e~~RtG~val~r~~~~  160 (174)
T CHL00100         81 CVERELMLIKINVNSQTRPEILEIAQIFRAKVVDLSEESLILEVTGDPGKIVAIEQLLEKFGIIEIARTGKIALIRESKV  160 (174)
T ss_pred             ceeeEEEEEEEecCCcCHHHHHHHHHHhCCEEEEecCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEccCceeEecCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999877


Q ss_pred             CCccccccc
Q 011491          236 DTAPFWNFS  244 (484)
Q Consensus       236 ~~~~~~~~~  244 (484)
                      ...++.++|
T Consensus       161 ~~~~l~~~~  169 (174)
T CHL00100        161 NTEYLRYIS  169 (174)
T ss_pred             hHHHHHhhh
Confidence            665554433

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=100.00  E-value=4.1e-51  Score=377.88  Aligned_cols=159  Identities=50%  Similarity=0.776  Sum_probs=155.4

Q ss_pred             ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEeCChhHHHHHHHHHhcCcceeEEEecCCc
Q 011491           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNE  154 (484)
Q Consensus        77 ~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~iTIVV~gde~~veQI~kQL~KLidVikV~dlt~~  154 (484)
                      +|+|+++++++|+||+|+||+|||+||||||+||+|++||+++  +|||++.||+..+||+.|||+||+||++|.+++++
T Consensus         2 ~m~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g~~~~~EQi~kQL~kLidV~kV~d~~~~   81 (163)
T COG0440           2 PMRRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSGDEQVLEQIIKQLNKLIDVLKVLDLTSE   81 (163)
T ss_pred             CceEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcCCcchHHHHHHHHHhhccceeEEEcCCc
Confidence            6899999999999999999999999999999999999999996  59999999999999999999999999999999999


Q ss_pred             hhhhhhheeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecCcC
Q 011491          155 PHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKL  234 (484)
Q Consensus       155 ~~V~RELaLiKV~~~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~fGIlE~aRTG~iAl~Rg~~  234 (484)
                      ++++|||+|+||++++..|.|+.+++++|||+|||++++++++|+||+++|+++|++.|+||||+|++|||.+||.||+.
T Consensus        82 ~~veRel~LiKv~~~~~~R~ei~~~~~ifr~~vvDvs~~~~~~eltG~~~ki~afi~~l~~~gi~e~~rtG~~~~~Rg~~  161 (163)
T COG0440          82 PHVERELALIKVSAEGSERGEIARITEIFRASVVDVSPESLTIELTGDEEKIEAFIRLLRPYGIIEIARTGVVAMSRGPK  161 (163)
T ss_pred             chhheeeEEEEEecCccchHHHHHHHHHhCceEEecCcceEEEEEeCChHHHHHHHHHhcccceeEEEeccceeecccCC
Confidence            99999999999999998899999999999999999999999999999999999999999999999999999999999976


Q ss_pred             C
Q 011491          235 G  235 (484)
Q Consensus       235 ~  235 (484)
                      .
T Consensus       162 ~  162 (163)
T COG0440         162 K  162 (163)
T ss_pred             C
Confidence            4

>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]

Probab=100.00  E-value=2e-51  Score=400.43  Aligned_cols=236  Identities=51%  Similarity=0.734  Sum_probs=219.9

Q ss_pred             cccceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChhHHHHHHHHHhcCcceeEEEec
Q 011491           74 ASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDI  151 (484)
Q Consensus        74 ~~~~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gde~~veQI~kQL~KLidVikV~dl  151 (484)
                      ....++|+|+++|+|+||||+||+|+|+|||||||||.||.||+++.  ||||+.|+|..++|.++||+||++|++|.|+
T Consensus        72 ~qr~krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gtd~VveQa~rQiedlVnV~aVlDy  151 (309)
T KOG2663|consen   72 RQRVKRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGTDGVVEQARRQIEDLVNVYAVLDY  151 (309)
T ss_pred             cccccceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEeccHHHHHHHHHHHHHhhhhheeeec
Confidence            46889999999999999999999999999999999999999999975  8999999999999999999999999999999


Q ss_pred             CCchhhhhhheeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeec
Q 011491          152 SNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRR  231 (484)
Q Consensus       152 t~~~~V~RELaLiKV~~~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~fGIlE~aRTG~iAl~R  231 (484)
                      +.+++|+|||||+||+         +...+.|+|  ||..++++++|+|||++   ++...|++|+|.|++|||. |+.|
T Consensus       152 t~e~~VeRELmlakvs---------llg~d~Fra--vd~~eh~~t~e~tadsg---al~tnlkkkq~~e~v~tak-allr  216 (309)
T KOG2663|consen  152 TNEPIVERELMLAKVS---------LLGVDYFRA--VDLHEHTLTIEVTADSG---ALVTNLKKKQIHEIVRTAK-ALLR  216 (309)
T ss_pred             CCChHHHHHHHHHHHH---------hhhHHHHHh--hhhhhhhhhhhhccCch---HHHhhHHHhccchhhccHH-HHHH
Confidence            9999999999999998         899999999  99999999999999999   8889999999999999999 9999


Q ss_pred             CcCCCCcccccccccCCchhhhhccccccccccccccCCCCCCCCCCCCceeecCCCCCCcccccccccccccccCCCCC
Q 011491          232 EKLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLNGNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSG  311 (484)
Q Consensus       232 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdvy~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (484)
                      .+++..+++|+|+++.||++.+..+...+.+..            +.+|||||++|.-++         +| +++++.+|
T Consensus       217 lk~~~la~i~rlta~f~grvvdis~~s~i~elt------------a~p~rV~~fl~l~dp---------~g-vle~~rSG  274 (309)
T KOG2663|consen  217 LKMGHLAPIWRLTAAFYGRVVDISETSCIVELT------------AKPGRVYPFLPLVDP---------KG-VLEEDRSG  274 (309)
T ss_pred             HhhhccchHHHHhhhhccchhccccceeeeeec------------cCCCcccccccccCc---------cc-chhhcccc
Confidence            999999999999999999999888877755432            678999999997433         22 66889999


Q ss_pred             ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC
Q 011491          312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG  364 (484)
Q Consensus       312 ~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~g  364 (484)
                      ++.||++.++.|-|                  ++++|+.|.++++|||.+.+|
T Consensus       275 l~a~trspl~n~v~------------------e~A~~dae~eei~rIttlpPg  309 (309)
T KOG2663|consen  275 LRAHTRSPLVNSVP------------------ELAVGDAEIEEISRITTLPPG  309 (309)
T ss_pred             hhhcccccccccCh------------------hhccCchhhhhheeccccCCC
Confidence            99999999999999                  899999999999999988765

>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]

Probab=100.00  E-value=4.3e-35  Score=286.28  Aligned_cols=163  Identities=33%  Similarity=0.526  Sum_probs=150.9

Q ss_pred             CCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEeccC
Q 011491          310 SGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDIT  389 (484)
Q Consensus       310 ~~~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dlt  389 (484)
                      +..++|+|+++|.|.|||||||+|+|+|||||||||.||-+|++.++|||||+.|+|+.++|.+.||+||++|++|.|++
T Consensus        73 qr~krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gtd~VveQa~rQiedlVnV~aVlDyt  152 (309)
T KOG2663|consen   73 QRVKRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGTDGVVEQARRQIEDLVNVYAVLDYT  152 (309)
T ss_pred             ccccceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEeccHHHHHHHHHHHHHhhhhheeeecC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchhHHHhhheeEEecCc-------------------------------------------------cchHHHHHHHHHc
Q 011491          390 HLPFAERELILIKIAVNT-------------------------------------------------AARRDVLDIAKIF  420 (484)
Q Consensus       390 ~~~~V~REL~LIKV~~~~-------------------------------------------------~~r~eI~~la~if  420 (484)
                      .++.|+|||||+||..-.                                                 .+-..|.++...|
T Consensus       153 ~e~~VeRELmlakvsllg~d~Fravd~~eh~~t~e~tadsgal~tnlkkkq~~e~v~takallrlk~~~la~i~rlta~f  232 (309)
T KOG2663|consen  153 NEPIVERELMLAKVSLLGVDYFRAVDLHEHTLTIEVTADSGALVTNLKKKQIHEIVRTAKALLRLKMGHLAPIWRLTAAF  232 (309)
T ss_pred             CChHHHHHHHHHHHHhhhHHHHHhhhhhhhhhhhhhccCchHHHhhHHHhccchhhccHHHHHHHhhhccchHHHHhhhh
Confidence            999999999999986311                                                 0012366788899


Q ss_pred             CcEEEEecCCEEEEEEeCCHHHHHHHHHHhccCCcEEEeecceeEeecCCCc
Q 011491          421 RARAVDVSDHTITLELTGDLNKIIALQRLLEPYGICEVARTGRVALVRESGV  472 (484)
Q Consensus       421 rakIVDvs~~si~iE~TG~~~Kidafi~lL~pyGIlEvaRTG~vAl~Rg~~~  472 (484)
                      .++++|++++++++|+|..+..+..|+.+++|||++|..|||..|+.|...+
T Consensus       233 ~grvvdis~~s~i~elta~p~rV~~fl~l~dp~gvle~~rSGl~a~trspl~  284 (309)
T KOG2663|consen  233 YGRVVDISETSCIVELTAKPGRVYPFLPLVDPKGVLEEDRSGLRAHTRSPLV  284 (309)
T ss_pred             ccchhccccceeeeeeccCCCcccccccccCcccchhhcccchhhccccccc
Confidence            9999999999999999999999999999999999999999999999998654

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=99.97  E-value=1e-31  Score=230.44  Aligned_cols=90  Identities=23%  Similarity=0.377  Sum_probs=85.8

Q ss_pred             CCCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEecc
Q 011491          309 PSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI  388 (484)
Q Consensus       309 ~~~~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dl  388 (484)
                      +..+.+|+||++|+|+||||+||+|||+||||||+||+||+|+++++|||||++. +++.++||+|||+||+||++|.++
T Consensus         3 ~~~~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~-~~~~i~Qi~kQL~KLidVikV~~l   81 (96)
T PRK08178          3 NTTHDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN-DDQRLEQMISQIEKLEDVLKVRRN   81 (96)
T ss_pred             CCCCCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc-CchHHHHHHHHHhCCcCEEEEEEC
Confidence            4457789999999999999999999999999999999999999999999999999 568999999999999999999999


Q ss_pred             CCchhHHHhhh
Q 011491          389 THLPFAERELI  399 (484)
Q Consensus       389 t~~~~V~REL~  399 (484)
                      ++++.+++|+.
T Consensus        82 ~~~~~v~~e~~   92 (96)
T PRK08178         82 QSDPTMFNKIA   92 (96)
T ss_pred             CCchhHHHHHH
Confidence            99999999985

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=99.97  E-value=1.5e-31  Score=224.40  Aligned_cols=80  Identities=28%  Similarity=0.395  Sum_probs=76.9

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEEEe--ccC
Q 011491          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEVQ--DIT  389 (484)
Q Consensus       313 ~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gde~~ieql~kQL~KLidVi~V~--dlt  389 (484)
                      |+|+||++|+|+||||+||+++|+||||||+||+||+||+|++||||||++ ||++.++||+|||+||+||++|.  |++
T Consensus         1 mk~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~~~ieqI~kQL~KlidVikV~~~~~~   80 (84)
T PRK13562          1 MTRILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDDTSLHILIKKLKQQINVLTVECYDLV   80 (84)
T ss_pred             CcEEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCHHHHHHHHHHHhCCccEEEEEEeecc
Confidence            589999999999999999999999999999999999999999999999998 99999999999999999999999  777


Q ss_pred             Cch
Q 011491          390 HLP  392 (484)
Q Consensus       390 ~~~  392 (484)
                      +.+
T Consensus        81 ~~~   83 (84)
T PRK13562         81 DNE   83 (84)
T ss_pred             ccC
Confidence            654

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=99.96  E-value=4.2e-30  Score=212.25  Aligned_cols=76  Identities=34%  Similarity=0.568  Sum_probs=74.4

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEecc
Q 011491          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI  388 (484)
Q Consensus       313 ~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dl  388 (484)
                      |+|+|+++|+|+||||+||+++|+||||||+||++|++|++++|||||++.|+++.++||+|||+||+||++|.++
T Consensus         1 m~~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~~~i~qi~kQL~KLidV~~V~~~   76 (76)
T PRK06737          1 MSHTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTENEATLLVSQLKKLINVLQVNKL   76 (76)
T ss_pred             CeEEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCHHHHHHHHHHHhCCcCEEEEEeC
Confidence            5899999999999999999999999999999999999999999999999999999999999999999999999875

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=99.96  E-value=4.2e-29  Score=214.33  Aligned_cols=85  Identities=24%  Similarity=0.448  Sum_probs=81.0

Q ss_pred             ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEeCChhHHHHHHHHHhcCcceeEEEecCCc
Q 011491           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNE  154 (484)
Q Consensus        77 ~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~iTIVV~gde~~veQI~kQL~KLidVikV~dlt~~  154 (484)
                      +.+|+||++|+|+||||+||+|||+||||||+||+||+|++++  +|||++. ++..++||+|||+||+||++|.+++++
T Consensus         6 ~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~-~~~~i~Qi~kQL~KLidVikV~~l~~~   84 (96)
T PRK08178          6 HDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN-DDQRLEQMISQIEKLEDVLKVRRNQSD   84 (96)
T ss_pred             CCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc-CchHHHHHHHHHhCCcCEEEEEECCCc
Confidence            6789999999999999999999999999999999999999997  5999998 578999999999999999999999999


Q ss_pred             hhhhhhhe
Q 011491          155 PHVERELM  162 (484)
Q Consensus       155 ~~V~RELa  162 (484)
                      +.|++|+.
T Consensus        85 ~~v~~e~~   92 (96)
T PRK08178         85 PTMFNKIA   92 (96)
T ss_pred             hhHHHHHH
Confidence            99999984

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=99.96  E-value=5.4e-29  Score=209.07  Aligned_cols=78  Identities=27%  Similarity=0.460  Sum_probs=73.9

Q ss_pred             eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEe-CChhHHHHHHHHHhcCcceeEEE--ecC
Q 011491           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVS-GTERVLRQVVEQLNKLVNVIKVE--DIS  152 (484)
Q Consensus        78 ~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~iTIVV~-gde~~veQI~kQL~KLidVikV~--dlt  152 (484)
                      |+|+||++|+|+||||+||+|+|+||||||+||+||+|++|+  +|||+++ ||++.++||+|||+||+||++|.  |++
T Consensus         1 mk~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~~~ieqI~kQL~KlidVikV~~~~~~   80 (84)
T PRK13562          1 MTRILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDDTSLHILIKKLKQQINVLTVECYDLV   80 (84)
T ss_pred             CcEEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCHHHHHHHHHHHhCCccEEEEEEeecc
Confidence            589999999999999999999999999999999999999998  5999998 99999999999999999999999  777


Q ss_pred             Cch
Q 011491          153 NEP  155 (484)
Q Consensus       153 ~~~  155 (484)
                      +.+
T Consensus        81 ~~~   83 (84)
T PRK13562         81 DNE   83 (84)
T ss_pred             ccC
Confidence            643

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=99.95  E-value=4e-28  Score=200.41  Aligned_cols=75  Identities=25%  Similarity=0.375  Sum_probs=72.6

Q ss_pred             ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEec
Q 011491          312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQD  387 (484)
Q Consensus       312 ~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~d  387 (484)
                      ||+|+|+++|+|+||||+||+|||+||||||+||++|+|+++++||||+++. +++.++||.|||+||+||++|+.
T Consensus         1 mm~~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~-~~~~i~ql~kQL~KL~dV~~V~~   75 (76)
T PRK11152          1 MMQHQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA-SERPIDLLSSQLNKLVDVAHVEI   75 (76)
T ss_pred             CceEEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC-CCchHHHHHHHHhcCcCeEEEEE
Confidence            6899999999999999999999999999999999999999999999999995 89999999999999999999974

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=99.95  E-value=1.2e-27  Score=197.73  Aligned_cols=74  Identities=34%  Similarity=0.558  Sum_probs=71.4

Q ss_pred             eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEeCChhHHHHHHHHHhcCcceeEEEec
Q 011491           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI  151 (484)
Q Consensus        78 ~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~iTIVV~gde~~veQI~kQL~KLidVikV~dl  151 (484)
                      |+|+|+++|+|+||||+||+|+|+||||||+||++|++++++  +|||++.|+++.++||.|||+||+||++|.++
T Consensus         1 m~~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~~~i~qi~kQL~KLidV~~V~~~   76 (76)
T PRK06737          1 MSHTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTENEATLLVSQLKKLINVLQVNKL   76 (76)
T ss_pred             CeEEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCHHHHHHHHHHHhCCcCEEEEEeC
Confidence            589999999999999999999999999999999999999997  49999999999999999999999999999985

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=99.93  E-value=6.5e-26  Score=187.30  Aligned_cols=73  Identities=27%  Similarity=0.436  Sum_probs=69.3

Q ss_pred             ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChhHHHHHHHHHhcCcceeEEEe
Q 011491           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVED  150 (484)
Q Consensus        77 ~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gde~~veQI~kQL~KLidVikV~d  150 (484)
                      ||+|+|+++|+|+||||+||+|+|+||||||+||++|+|++++.  |||++ ++++.++||.|||+||+||++|+.
T Consensus         1 mm~~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v-~~~~~i~ql~kQL~KL~dV~~V~~   75 (76)
T PRK11152          1 MMQHQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV-ASERPIDLLSSQLNKLVDVAHVEI   75 (76)
T ss_pred             CceEEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE-CCCchHHHHHHHHhcCcCeEEEEE
Confidence            68999999999999999999999999999999999999999974  99999 489999999999999999999974

>PF10369 ALS_ss_C: Small subunit of acetolactate synthase; InterPro: IPR019455 This entry represents the C-terminal domain of the small subunit of acetolactate synthase (the N-terminal domain being an ACT domain)

Probab=99.92  E-value=1.8e-25  Score=183.44  Aligned_cols=75  Identities=47%  Similarity=0.753  Sum_probs=70.8

Q ss_pred             hhhheeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecC
Q 011491          158 ERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRRE  232 (484)
Q Consensus       158 ~RELaLiKV~~~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~fGIlE~aRTG~iAl~Rg  232 (484)
                      +||||||||++++++|.+|+++++.|+|+|||++++++++|+||+++|||+|+++|+||||+|++|||++||.||
T Consensus         1 erEl~LiKV~~~~~~r~ei~~l~~~f~a~ivd~~~~~~iie~tG~~~kid~fi~~l~~~gi~Ei~RtG~vAi~Rg   75 (75)
T PF10369_consen    1 ERELALIKVKATPENRSEILQLAEIFRARIVDVSPDSIIIELTGTPEKIDAFIKLLKPFGILEIARTGRVAIERG   75 (75)
T ss_dssp             EEEEEEEEEE-SCHHHHHHHHHHHHTT-EEEEEETTEEEEEEEE-HHHHHHHHHHSTGGGEEEEEEEEEEEEEST
T ss_pred             CeEEEEEEEECCccCHHHHHHHHHHhCCEEEEECCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEcccceeEeCC
Confidence            699999999998899999999999999999999999999999999999999999999999999999999999997

Acetolactate synthase is a tetrameric enzyme, composed of two large and two small subunits, which catalyses the first step in branched-chain amino acid biosynthesis. This reaction is sensitive to certain herbicides []. ; PDB: 2F1F_B 2FGC_A 2PC6_A.

>PF10369 ALS_ss_C: Small subunit of acetolactate synthase; InterPro: IPR019455 This entry represents the C-terminal domain of the small subunit of acetolactate synthase (the N-terminal domain being an ACT domain)

Probab=99.92  E-value=2.8e-25  Score=182.33  Aligned_cols=75  Identities=55%  Similarity=0.832  Sum_probs=70.6

Q ss_pred             HHhhheeEEecCccchHHHHHHHHHcCcEEEEecCCEEEEEEeCCHHHHHHHHHHhccCCcEEEeecceeEeecC
Q 011491          395 ERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLEPYGICEVARTGRVALVRE  469 (484)
Q Consensus       395 ~REL~LIKV~~~~~~r~eI~~la~ifrakIVDvs~~si~iE~TG~~~Kidafi~lL~pyGIlEvaRTG~vAl~Rg  469 (484)
                      +||||||||+++..+|.+|++|++.|+|+|||++++++++|+||+++|||+|+++|+||||+|++|||++||.||
T Consensus         1 erEl~LiKV~~~~~~r~ei~~l~~~f~a~ivd~~~~~~iie~tG~~~kid~fi~~l~~~gi~Ei~RtG~vAi~Rg   75 (75)
T PF10369_consen    1 ERELALIKVKATPENRSEILQLAEIFRARIVDVSPDSIIIELTGTPEKIDAFIKLLKPFGILEIARTGRVAIERG   75 (75)
T ss_dssp             EEEEEEEEEE-SCHHHHHHHHHHHHTT-EEEEEETTEEEEEEEE-HHHHHHHHHHSTGGGEEEEEEEEEEEEEST
T ss_pred             CeEEEEEEEECCccCHHHHHHHHHHhCCEEEEECCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEcccceeEeCC
Confidence            589999999998899999999999999999999999999999999999999999999999999999999999997

Acetolactate synthase is a tetrameric enzyme, composed of two large and two small subunits, which catalyses the first step in branched-chain amino acid biosynthesis. This reaction is sensitive to certain herbicides []. ; PDB: 2F1F_B 2FGC_A 2PC6_A.

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=99.88  E-value=8.2e-23  Score=162.41  Aligned_cols=63  Identities=59%  Similarity=0.920  Sum_probs=59.2

Q ss_pred             CchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEE
Q 011491          323 NTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEV  385 (484)
Q Consensus       323 N~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V  385 (484)
                      |+||+|+||+++|+||||||+||+++++++++++||||++.|+++.++||++||+||+||++|
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~~~~i~~l~~Ql~KlidV~~V   63 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGDDREIEQLVKQLEKLIDVVKV   63 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-CCHHHHHHHHHHCSTTEEEE
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeCchhHHHHHHHHhccCCeEeC
Confidence            899999999999999999999999999999999999999999999999999999999999987

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=99.83  E-value=9.1e-21  Score=150.72  Aligned_cols=61  Identities=56%  Similarity=0.950  Sum_probs=56.2

Q ss_pred             CchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChhHHHHHHHHHhcCcceeEE
Q 011491           88 DESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKV  148 (484)
Q Consensus        88 N~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gde~~veQI~kQL~KLidVikV  148 (484)
                      |+||+|+||+++|+||||||+||+++++++++.  |||++.|+++.++||++||+||+||++|
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~~~~i~~l~~Ql~KlidV~~V   63 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGDDREIEQLVKQLEKLIDVVKV   63 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-CCHHHHHHHHHHCSTTEEEE
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeCchhHHHHHHHHhccCCeEeC
Confidence            899999999999999999999999999999985  9999999999999999999999999987

>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]

Probab=99.08  E-value=3.5e-10  Score=94.85  Aligned_cols=77  Identities=23%  Similarity=0.309  Sum_probs=72.9

Q ss_pred             ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEeccC
Q 011491          312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDIT  389 (484)
Q Consensus       312 ~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dlt  389 (484)
                      ||+|.|.+.+..+||.|.||.++-++|||-+.++++++..+.+.-.|.++|+++ +.++-|..||+||.||..|+..-
T Consensus         1 m~qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s~-R~~~lL~~QLeKl~Dv~~V~i~~   77 (86)
T COG3978           1 MMQYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDSD-RSVDLLTSQLEKLYDVAHVEITQ   77 (86)
T ss_pred             CceEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcCC-CChHHHHHHHHHHccceeEEEee
Confidence            789999999999999999999999999999999999999999999999999965 89999999999999999997544

>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]

Probab=98.90  E-value=4.5e-09  Score=88.31  Aligned_cols=75  Identities=20%  Similarity=0.311  Sum_probs=68.9

Q ss_pred             ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChhHHHHHHHHHhcCcceeEEEecC
Q 011491           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS  152 (484)
Q Consensus        77 ~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gde~~veQI~kQL~KLidVikV~dlt  152 (484)
                      ||+|.+.+.+..+||.|.||.++-++|||-+.+++....-|.+.  +.++|++ ++.++-|..||+||.||..|+-.-
T Consensus         1 m~qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s-~R~~~lL~~QLeKl~Dv~~V~i~~   77 (86)
T COG3978           1 MMQYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDS-DRSVDLLTSQLEKLYDVAHVEITQ   77 (86)
T ss_pred             CceEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcC-CCChHHHHHHHHHHccceeEEEee
Confidence            78999999999999999999999999999999999998877776  8889987 568999999999999999998543

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.83  E-value=1.6e-08  Score=77.36  Aligned_cols=66  Identities=24%  Similarity=0.422  Sum_probs=58.3

Q ss_pred             EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccc
Q 011491          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLID  381 (484)
Q Consensus       315 htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLid  381 (484)
                      |+|.+.+.|+||+|.+|+.+|+++|+||.++....+.+. ...+.++...+....+++.+.|+++.+
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~   66 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDG-VGIVFIVIVVDEEDLEKLLEELEALPG   66 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESST-TEEEEEEEEEEGHGHHHHHHHHHHHTT
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCC-ceEEEEEEECCCCCHHHHHHHHHcccC
Confidence            789999999999999999999999999999999998876 555666666788899999999998764

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=98.81  E-value=4e-08  Score=75.25  Aligned_cols=71  Identities=55%  Similarity=0.918  Sum_probs=63.3

Q ss_pred             EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEE
Q 011491          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEV  385 (484)
Q Consensus       315 htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V  385 (484)
                      |+|.+.+.|+||+|.+|+.+|+..|+||.++...+....+..++.+.+......+++++++|+++-+|.+|
T Consensus         1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v   71 (72)
T cd04878           1 HTLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDDDVIEQIVKQLNKLVDVLKV   71 (72)
T ss_pred             CEEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECCHHHHHHHHHHHhCCccEEEe
Confidence            79999999999999999999999999999999876535677888888874338899999999999999987

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.75  E-value=4.4e-08  Score=74.93  Aligned_cols=65  Identities=28%  Similarity=0.460  Sum_probs=56.3

Q ss_pred             EEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-cEEEEEEeCChhHHHHHHHHHhcCcc
Q 011491           80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIVVSGTERVLRQVVEQLNKLVN  144 (484)
Q Consensus        80 htISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~~iTIVV~gde~~veQI~kQL~KLid  144 (484)
                      |+|.+.+.|+||+|.+|+.+|+++|+||.++......+. ..+.++...+....+++.+.|+++.+
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   66 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDEEDLEKLLEELEALPG   66 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEGHGHHHHHHHHHHHTT
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCCCCHHHHHHHHHcccC
Confidence            789999999999999999999999999999999988774 34555566678889999999988753

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=98.67  E-value=2.7e-07  Score=74.83  Aligned_cols=75  Identities=25%  Similarity=0.385  Sum_probs=63.9

Q ss_pred             ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEEEe
Q 011491          312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEVQ  386 (484)
Q Consensus       312 ~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gde~~ieql~kQL~KLidVi~V~  386 (484)
                      .-+.+|.|...|+||+|+.|+.+++.-|.||.++++....+.+..++++.+. .+-+.+++++++|+++-+|.+|+
T Consensus         4 ~f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d~~~L~~ii~~L~~i~~V~~V~   79 (80)
T PF13291_consen    4 SFPVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKDLEHLNQIIRKLRQIPGVISVE   79 (80)
T ss_dssp             -EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESSHHHHHHHHHHHCTSTTEEEEE
T ss_pred             EEEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECCHHHHHHHHHHHHCCCCeeEEE
Confidence            3467899999999999999999999999999999999976577888888876 57889999999999999999986

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=98.61  E-value=1.8e-07  Score=71.18  Aligned_cols=71  Identities=25%  Similarity=0.417  Sum_probs=62.8

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEecc
Q 011491          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI  388 (484)
Q Consensus       316 tLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dl  388 (484)
                      +|.+.+.|+||+|++|+.+|+.+|+||.++.+.+.+..+...+++.++..  ..++++++|+++-+|.+|..+
T Consensus         1 ~l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~~--~~~~l~~~l~~~~~V~~v~~~   71 (71)
T cd04879           1 RLLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSP--VPEEVLEELKALPGIIRVRLI   71 (71)
T ss_pred             CEEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCCC--CCHHHHHHHHcCCCeEEEEEC
Confidence            36789999999999999999999999999999876656889999998643  588999999999999999764

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=98.59  E-value=3.9e-07  Score=69.72  Aligned_cols=69  Identities=59%  Similarity=0.947  Sum_probs=58.1

Q ss_pred             EEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEeCChhHHHHHHHHHhcCcceeEE
Q 011491           80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTERVLRQVVEQLNKLVNVIKV  148 (484)
Q Consensus        80 htISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~iTIVV~gde~~veQI~kQL~KLidVikV  148 (484)
                      |+|.+.+.|+||+|.+|+.+|+..|+||.++........+  .+.+.+......+++++++|.++-+|.+|
T Consensus         1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v   71 (72)
T cd04878           1 HTLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDDDVIEQIVKQLNKLVDVLKV   71 (72)
T ss_pred             CEEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECCHHHHHHHHHHHhCCccEEEe
Confidence            7899999999999999999999999999999987642233  36666653337899999999999999987

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>PRK06349 homoserine dehydrogenase; Provisional

Probab=98.58  E-value=1.5e-07  Score=99.31  Aligned_cols=73  Identities=19%  Similarity=0.260  Sum_probs=67.1

Q ss_pred             ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEEE
Q 011491          312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEV  385 (484)
Q Consensus       312 ~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gde~~ieql~kQL~KLidVi~V  385 (484)
                      ..+|.|++.++|+||||.+|+++|+++|+||+|+...+.+. +.++++|+++ .++..++++++||+||.+|.+.
T Consensus       346 ~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~-~~~~ivivT~~~~e~~l~~~i~~L~~l~~V~~~  419 (426)
T PRK06349        346 ESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGG-EGAEIVIVTHETSEAALRAALAAIEALDVVLGI  419 (426)
T ss_pred             ceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCC-CceeEEEEEEeCCHHHHHHHHHHHhcCcccccc
Confidence            45799999999999999999999999999999999987654 8899999998 8899999999999999998764

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=98.53  E-value=3.7e-07  Score=71.06  Aligned_cols=71  Identities=21%  Similarity=0.360  Sum_probs=62.3

Q ss_pred             EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEEE
Q 011491          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEV  385 (484)
Q Consensus       315 htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gde~~ieql~kQL~KLidVi~V  385 (484)
                      |.|.+.+.|+||+|++++.+|+..|.||+++...+..+.+..++.+++. .+...+++++++|+++-+|..+
T Consensus         1 ~yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~i~~L~~~~~V~~~   72 (79)
T cd04881           1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHETSEAALNAALAEIEALDAVQGV   72 (79)
T ss_pred             CEEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccCCHHHHHHHHHHHHcCccccCC
Confidence            5789999999999999999999999999999886655458888888776 5778899999999999888765

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=98.49  E-value=5.4e-07  Score=68.96  Aligned_cols=71  Identities=24%  Similarity=0.336  Sum_probs=62.4

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEecc
Q 011491          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI  388 (484)
Q Consensus       316 tLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dl  388 (484)
                      ||.+.+.|+||+|.+++.+|+..|.||.++.+.+....+...+.+.+++.  .+++++++|+++-+|.+|..+
T Consensus         1 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~~--~~~~~i~~l~~~~~v~~v~~~   71 (71)
T cd04903           1 TLIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQP--IDEEVIEEIKKIPNIHQVILI   71 (71)
T ss_pred             CEEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCCC--CCHHHHHHHHcCCCceEEEEC
Confidence            57899999999999999999999999999998765556778888888765  788999999999999998753

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=98.45  E-value=1.1e-06  Score=69.25  Aligned_cols=46  Identities=20%  Similarity=0.501  Sum_probs=40.2

Q ss_pred             EEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEE
Q 011491           80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVV  125 (484)
Q Consensus        80 htISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV  125 (484)
                      +.|++.++|+||+|++|+.+|+++|+||+++.+.+.++++.+.+.+
T Consensus         2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~   47 (66)
T cd04908           2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEFGILRLIV   47 (66)
T ss_pred             EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEE
Confidence            4688999999999999999999999999999998877765566655

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=98.43  E-value=1.2e-06  Score=68.96  Aligned_cols=45  Identities=31%  Similarity=0.555  Sum_probs=39.1

Q ss_pred             EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEE
Q 011491          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCIT  359 (484)
Q Consensus       315 htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiT  359 (484)
                      +.|++.++|+||+|++|+.+|+++|+||+|+.+.+.+++.+.|+.
T Consensus         2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~   46 (66)
T cd04908           2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEFGILRLI   46 (66)
T ss_pred             EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEE
Confidence            468889999999999999999999999999999887776555553

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=98.40  E-value=1e-06  Score=67.04  Aligned_cols=68  Identities=26%  Similarity=0.465  Sum_probs=58.0

Q ss_pred             EEEEEcCchhHHHHHHHHHhccCceeeeEeeeecC--CCcEEEEEEeCChhHHHHHHHHHhcCcceeEEEec
Q 011491           82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV--DKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI  151 (484)
Q Consensus        82 ISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Te--d~~~iTIVV~gde~~veQI~kQL~KLidVikV~dl  151 (484)
                      |.+.+.|+||+|++|+.+|+.+|+||.++.+...+  +...+++.++..  .+++++++|.++-+|.+|..+
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~~--~~~~l~~~l~~~~~V~~v~~~   71 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSP--VPEEVLEELKALPGIIRVRLI   71 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCCC--CCHHHHHHHHcCCCeEEEEEC
Confidence            67899999999999999999999999999998765  233477777543  588999999999999999864

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>PRK06349 homoserine dehydrogenase; Provisional

Probab=98.40  E-value=7.5e-07  Score=94.03  Aligned_cols=75  Identities=25%  Similarity=0.389  Sum_probs=65.4

Q ss_pred             cccceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-cEEEEEEe-CChhHHHHHHHHHhcCcceeEE
Q 011491           74 ASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIVVS-GTERVLRQVVEQLNKLVNVIKV  148 (484)
Q Consensus        74 ~~~~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~~iTIVV~-gde~~veQI~kQL~KLidVikV  148 (484)
                      .+...+|.|++.++|+||||++|+++|+++|+||+|+...++++. ..++|+++ .++..++++++||+||.+|.+.
T Consensus       343 ~~~~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~~~~e~~l~~~i~~L~~l~~V~~~  419 (426)
T PRK06349        343 EEIESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTHETSEAALRAALAAIEALDVVLGI  419 (426)
T ss_pred             HHhceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEEeCCHHHHHHHHHHHhcCcccccc
Confidence            445678999999999999999999999999999999998876442 45888887 7889999999999999998654

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=98.40  E-value=3e-06  Score=68.76  Aligned_cols=72  Identities=26%  Similarity=0.399  Sum_probs=57.6

Q ss_pred             eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEe-CChhHHHHHHHHHhcCcceeEEE
Q 011491           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVS-GTERVLRQVVEQLNKLVNVIKVE  149 (484)
Q Consensus        78 ~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~iTIVV~-gde~~veQI~kQL~KLidVikV~  149 (484)
                      -.-.|.|.+.|+||+|+.|+.+++..|.||.++++....+.+  .+++.+. .|-+.+++++++|+++-+|.+|+
T Consensus         5 f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d~~~L~~ii~~L~~i~~V~~V~   79 (80)
T PF13291_consen    5 FPVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKDLEHLNQIIRKLRQIPGVISVE   79 (80)
T ss_dssp             EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESSHHHHHHHHHHHCTSTTEEEEE
T ss_pred             EEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECCHHHHHHHHHHHHCCCCeeEEE
Confidence            356899999999999999999999999999999999874333  3444433 46789999999999999999986

>PRK08577 hypothetical protein; Provisional

Probab=98.37  E-value=3.3e-06  Score=76.06  Aligned_cols=76  Identities=24%  Similarity=0.397  Sum_probs=66.4

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe--CChHHHHHHHHHHhcccceEEEecc
Q 011491          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP--GTDESIGKLVQLLHKLIDLHEVQDI  388 (484)
Q Consensus       313 ~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~--gde~~ieql~kQL~KLidVi~V~dl  388 (484)
                      ..+.|.+.+.|+||+|+.|+.+|+..|+||.++.+......+..++++++.  ..+..+++++++|+++-+|.+|...
T Consensus        55 ~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~~~~l~~l~~~L~~l~~V~~V~~~  132 (136)
T PRK08577         55 KLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSDIDLEELEEELKKLEEVKEVEIR  132 (136)
T ss_pred             cEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCchhhHHHHHHHHHcCCCEEEEEEE
Confidence            469999999999999999999999999999999987766677787877766  3336899999999999999999754

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=98.30  E-value=3e-06  Score=65.94  Aligned_cols=70  Identities=26%  Similarity=0.360  Sum_probs=58.0

Q ss_pred             EEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC--cEEEEEEe-CChhHHHHHHHHHhcCcceeEEE
Q 011491           80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK--ALFTIVVS-GTERVLRQVVEQLNKLVNVIKVE  149 (484)
Q Consensus        80 htISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~--~~iTIVV~-gde~~veQI~kQL~KLidVikV~  149 (484)
                      |.|.+.+.|+||+|++++.+|++.|.||+++...+..+.  ..+.+++. .+...+++++++|.++-+|.++.
T Consensus         1 ~yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~i~~L~~~~~V~~~~   73 (79)
T cd04881           1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHETSEAALNAALAEIEALDAVQGVP   73 (79)
T ss_pred             CEEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccCCHHHHHHHHHHHHcCccccCCc
Confidence            578999999999999999999999999999988654332  34666654 56888999999999998887653

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=98.29  E-value=6.7e-06  Score=65.12  Aligned_cols=72  Identities=25%  Similarity=0.367  Sum_probs=59.7

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChH-HHHHHHHHHhcccceEEEecc
Q 011491          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDE-SIGKLVQLLHKLIDLHEVQDI  388 (484)
Q Consensus       316 tLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gde~-~ieql~kQL~KLidVi~V~dl  388 (484)
                      +|.+...|+||+|.+|++++++.|.||.+++... ...+..++.+++. .+.+ .+++|+++|.++-+|.+|+-+
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~-~~~~~~~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~~   75 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNI-PIHGRANVTISIDTSTMNGDIDELLEELREIDGVEKVELV   75 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCC-CCCCeEEEEEEEEcCchHHHHHHHHHHHhcCCCeEEEEEe
Confidence            5889999999999999999999999999997743 2246667777765 3444 899999999999999999753

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=98.28  E-value=6.5e-06  Score=63.26  Aligned_cols=70  Identities=34%  Similarity=0.424  Sum_probs=61.4

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEec
Q 011491          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQD  387 (484)
Q Consensus       316 tLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~d  387 (484)
                      .|.+.+.|+||+|++++.+|+..|+||.++...+. ..+..++++.+++. +.++.++++|++.-+|..|.-
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~-~~~~~~~~i~~~~~-~~~~~~~~~L~~~~~v~~v~~   71 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIE-REGKARIYMELEGV-GDIEELVEELRSLPIVREVEI   71 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEecc-CCCeEEEEEEEecc-ccHHHHHHHHhCCCCeEEEEe
Confidence            36788999999999999999999999999988654 35778899999876 788899999999999998864

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=98.27  E-value=3.5e-06  Score=64.46  Aligned_cols=69  Identities=29%  Similarity=0.405  Sum_probs=57.8

Q ss_pred             EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCC--CcEEEEEEeCChhHHHHHHHHHhcCcceeEEEec
Q 011491           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD--KALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI  151 (484)
Q Consensus        81 tISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted--~~~iTIVV~gde~~veQI~kQL~KLidVikV~dl  151 (484)
                      +|.+.+.|+||+|.+++.+|+..|+||.++.+.+...  .+.+.+.+++.  .+++++++|.++-.|.+|..+
T Consensus         1 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~~--~~~~~i~~l~~~~~v~~v~~~   71 (71)
T cd04903           1 TLIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQP--IDEEVIEEIKKIPNIHQVILI   71 (71)
T ss_pred             CEEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCCC--CCHHHHHHHHcCCCceEEEEC
Confidence            4789999999999999999999999999999876432  23466777654  788999999999999998753

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=98.25  E-value=1.7e-06  Score=67.39  Aligned_cols=68  Identities=18%  Similarity=0.279  Sum_probs=56.9

Q ss_pred             EEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhcCcceeEEEec
Q 011491           82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI  151 (484)
Q Consensus        82 ISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~KLidVikV~dl  151 (484)
                      |.+..+|+||+|++|+.++++.|+||.+++...+...+.+.+.++..  .+++++++|.++-+|++|..+
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~~~--~l~~li~~l~~~~~V~~v~~~   69 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDIDSE--VSEELLEALRAIPGTIRVRLL   69 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcCCC--CCHHHHHHHHcCCCeEEEEEC
Confidence            45688999999999999999999999999886654444566666553  888999999999999999754

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=98.23  E-value=2.3e-06  Score=66.59  Aligned_cols=68  Identities=15%  Similarity=0.260  Sum_probs=56.6

Q ss_pred             EEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEecc
Q 011491          317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI  388 (484)
Q Consensus       317 LsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dl  388 (484)
                      |-+..+|+||+|++|+.++++.|+||.++......  +...+.+.+...  .+++++++|.++-+|++|..+
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~--~~a~~~~~~~~~--~l~~li~~l~~~~~V~~v~~~   69 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRG--EIGYVVIDIDSE--VSEELLEALRAIPGTIRVRLL   69 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCC--CEEEEEEEcCCC--CCHHHHHHHHcCCCeEEEEEC
Confidence            45688999999999999999999999999876543  566666666644  788999999999999999754

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>PRK08577 hypothetical protein; Provisional

Probab=98.18  E-value=1.3e-05  Score=72.18  Aligned_cols=75  Identities=27%  Similarity=0.333  Sum_probs=61.9

Q ss_pred             ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEe--CChhHHHHHHHHHhcCcceeEEEec
Q 011491           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVS--GTERVLRQVVEQLNKLVNVIKVEDI  151 (484)
Q Consensus        77 ~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~iTIVV~--gde~~veQI~kQL~KLidVikV~dl  151 (484)
                      -..+.|.+.+.|+||+|+.|+.+|+..|+||.++++......+  .+++++.  ..+..+++++++|.++-+|..|...
T Consensus        54 k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~~~~l~~l~~~L~~l~~V~~V~~~  132 (136)
T PRK08577         54 KKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSDIDLEELEEELKKLEEVKEVEIR  132 (136)
T ss_pred             ccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCchhhHHHHHHHHHcCCCEEEEEEE
Confidence            3578999999999999999999999999999999987654333  3555444  4346799999999999999999853

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=98.18  E-value=5.4e-06  Score=64.87  Aligned_cols=71  Identities=21%  Similarity=0.332  Sum_probs=60.4

Q ss_pred             EEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEeccC
Q 011491          317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDIT  389 (484)
Q Consensus       317 LsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dlt  389 (484)
                      +.+.+.|+||+|++|+.+|+++|.||.++.+.+....+.+.+.+.++++  ....+.+.|.++-+|++|..+.
T Consensus         2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~~--~~~~~~~~l~~~~~v~~v~~~~   72 (73)
T cd04902           2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEP--VPDEVLEELRALPGILSAKVVE   72 (73)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCCC--CCHHHHHHHHcCCCccEEEEEe
Confidence            4568899999999999999999999999998887667888888888864  3458888999999999887653

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=98.16  E-value=6.8e-05  Score=72.07  Aligned_cols=65  Identities=22%  Similarity=0.321  Sum_probs=50.9

Q ss_pred             cceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHh
Q 011491           76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLN  140 (484)
Q Consensus        76 ~~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~  140 (484)
                      +++...|+++=.||||..++|+.+++..|.||...+...-...--|.+.+.+....+.++...|.
T Consensus         5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~~~~~~~~le~~L~   69 (190)
T PRK11589          5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGSWNAITLIESTLP   69 (190)
T ss_pred             cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeCChhHHHHHHHHHH
Confidence            44678999999999999999999999999999988877665543355566776666666655553

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=98.14  E-value=1.8e-05  Score=63.80  Aligned_cols=70  Identities=11%  Similarity=0.284  Sum_probs=60.5

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEeccC
Q 011491          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDIT  389 (484)
Q Consensus       316 tLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dlt  389 (484)
                      .|.|...|++|+|+.|+.+++..|+||.++.+...   +.-++++.+. +-+.+++++++|.++-+|.+|+-+.
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~---~~i~l~i~v~-~~~~L~~li~~L~~i~gV~~V~R~~   71 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK---GRIYLNFPTI-EFEKLQTLMPEIRRIDGVEDVKTVP   71 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC---CeEEEEeEec-CHHHHHHHHHHHhCCCCceEEEEee
Confidence            58899999999999999999999999999998653   4456666666 6678999999999999999998654

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=98.14  E-value=1.7e-05  Score=62.76  Aligned_cols=68  Identities=22%  Similarity=0.312  Sum_probs=59.9

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEE
Q 011491          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHE  384 (484)
Q Consensus       316 tLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gde~~ieql~kQL~KLidVi~  384 (484)
                      +|.+.+.|+||.|++|+.+++.-|.||.++..... ..+...+.+++. .+.+.++++++.|+++-+|.-
T Consensus         1 ~l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~-~~~~~~~~~~vev~~~~~l~~i~~~L~~i~gV~~   69 (74)
T cd04887           1 TLRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQ-GRDYTVRDITVDAPSEEHAETIVAAVRALPEVKV   69 (74)
T ss_pred             CEEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEe-cCCEEEEEEEEEcCCHHHHHHHHHHHhcCCCeEE
Confidence            47899999999999999999999999999998654 368888888877 577899999999999999874

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=98.12  E-value=2.1e-05  Score=60.43  Aligned_cols=69  Identities=28%  Similarity=0.388  Sum_probs=58.1

Q ss_pred             EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecC-CCcEEEEEEeCChhHHHHHHHHHhcCcceeEEEe
Q 011491           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKALFTIVVSGTERVLRQVVEQLNKLVNVIKVED  150 (484)
Q Consensus        81 tISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Te-d~~~iTIVV~gde~~veQI~kQL~KLidVikV~d  150 (484)
                      .|.+.+.|+||+|++++.+|++.|+||.++...... +...+++.+++. ..++.++++|++.-+|..|.-
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~L~~~~~v~~v~~   71 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELEGV-GDIEELVEELRSLPIVREVEI   71 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEecc-ccHHHHHHHHhCCCCeEEEEe
Confidence            478899999999999999999999999999876543 233477778775 688899999999999998864

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=98.11  E-value=1.9e-05  Score=62.55  Aligned_cols=71  Identities=20%  Similarity=0.349  Sum_probs=56.9

Q ss_pred             EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecC-CCcE--EEEEEeCChhHHHHHHHHHhcCcceeEEEec
Q 011491           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDI  151 (484)
Q Consensus        81 tISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Te-d~~~--iTIVV~gde~~veQI~kQL~KLidVikV~dl  151 (484)
                      .|.+.+.|+||+|++|+..+++.|.||.+++..... ....  +++.+.+-+..+++++++|.++-+|.+|+-+
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~~   75 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTMNGDIDELLEELREIDGVEKVELV   75 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCchHHHHHHHHHHHhcCCCeEEEEEe
Confidence            588999999999999999999999999999874322 1122  4444544445999999999999999999754

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=98.09  E-value=3.5e-05  Score=56.62  Aligned_cols=69  Identities=22%  Similarity=0.385  Sum_probs=58.9

Q ss_pred             EEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEEEe
Q 011491          317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEVQ  386 (484)
Q Consensus       317 LsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gde~~ieql~kQL~KLidVi~V~  386 (484)
                      |.+.+.|+||.+++++.+|+..++||.++...... .+...+.+++. .+...++.++++|.++..|.+|+
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~v~   70 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDD-DGLATIRLTLEVRDLEHLARIMRKLRQIPGVIDVR   70 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECC-CCEEEEEEEEEECCHHHHHHHHHHHhCCCCcEEEE
Confidence            46789999999999999999999999999887654 56677777765 46678999999999999998875

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>PRK00194 hypothetical protein; Validated

Probab=98.07  E-value=6.5e-06  Score=68.33  Aligned_cols=73  Identities=15%  Similarity=0.218  Sum_probs=55.4

Q ss_pred             ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCC--hHHHHHHHHHHhcccceEEEe
Q 011491          312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT--DESIGKLVQLLHKLIDLHEVQ  386 (484)
Q Consensus       312 ~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd--e~~ieql~kQL~KLidVi~V~  386 (484)
                      |++|++++.-.|+||++++|+++|+.+|.||..+.....  .+.--+.++++..  +..++.+.+.|+++-+...+.
T Consensus         1 ~~~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~l~~l~~~~~~~   75 (90)
T PRK00194          1 MMKAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIM--DGYFTMIMLVDISESKKDFAELKEELEELGKELGVK   75 (90)
T ss_pred             CceEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhh--CCeeEEEEEEEecCCCCCHHHHHHHHHHHHHHcCCE
Confidence            568999999999999999999999999999999987764  3444454454433  234677777777777665554

>PRK00194 hypothetical protein; Validated

Probab=98.03  E-value=8.6e-06  Score=67.58  Aligned_cols=73  Identities=22%  Similarity=0.287  Sum_probs=56.4

Q ss_pred             ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh--hHHHHHHHHHhcCcceeEEE
Q 011491           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE--RVLRQVVEQLNKLVNVIKVE  149 (484)
Q Consensus        77 ~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde--~~veQI~kQL~KLidVikV~  149 (484)
                      |++|++++.-.|+||++++|+++|+.+|.||..++.......-.++++++.+.  ..++.+.+.|+++-+...++
T Consensus         1 ~~~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~l~~l~~~~~~~   75 (90)
T PRK00194          1 MMKAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDISESKKDFAELKEELEELGKELGVK   75 (90)
T ss_pred             CceEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEecCCCCCHHHHHHHHHHHHHHcCCE
Confidence            56899999999999999999999999999999998765322223555666443  34678888888877766555

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=98.01  E-value=1.9e-05  Score=61.83  Aligned_cols=69  Identities=23%  Similarity=0.437  Sum_probs=55.4

Q ss_pred             EEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEeCChhHHHHHHHHHhcCcceeEEEecC
Q 011491           82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS  152 (484)
Q Consensus        82 ISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~iTIVV~gde~~veQI~kQL~KLidVikV~dlt  152 (484)
                      +-+...|+||+|++|+.+|+++|.||.++.+.+....+  .+.+.++++  ....+.+.|.++-+|++|..+.
T Consensus         2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~~--~~~~~~~~l~~~~~v~~v~~~~   72 (73)
T cd04902           2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEP--VPDEVLEELRALPGILSAKVVE   72 (73)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCCC--CCHHHHHHHHcCCCccEEEEEe
Confidence            45689999999999999999999999999987764333  366667653  3458888999999999887653

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=98.01  E-value=2.9e-05  Score=61.01  Aligned_cols=62  Identities=23%  Similarity=0.362  Sum_probs=52.0

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcc
Q 011491          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKL  379 (484)
Q Consensus       316 tLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KL  379 (484)
                      .+++.++|+||.|.+++.+|+++|+||+++...+...++...+.|.+.+++.  +++.+.|.+.
T Consensus         3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~~--~~~~~~L~~~   64 (72)
T cd04883           3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMNP--RPIIEDLRRA   64 (72)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCCH--HHHHHHHHHC
Confidence            5788999999999999999999999999999888767888889999886543  4666666653

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=98.01  E-value=1.6e-05  Score=60.27  Aligned_cols=46  Identities=22%  Similarity=0.516  Sum_probs=39.8

Q ss_pred             EEEEEcCchhHHHHHHHHHhccCceeeeEeeeecC-CCcEEEEEEeC
Q 011491           82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKALFTIVVSG  127 (484)
Q Consensus        82 ISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Te-d~~~iTIVV~g  127 (484)
                      |++.+.|+||.|.|++.+|+++|+||+++.+.+++ +.+.+.+.++.
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~   47 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD   47 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence            46899999999999999999999999999999886 44557777764

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>PRK04435 hypothetical protein; Provisional

Probab=97.98  E-value=7.1e-05  Score=68.93  Aligned_cols=78  Identities=26%  Similarity=0.336  Sum_probs=64.8

Q ss_pred             CceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe--CChHHHHHHHHHHhcccceEEEecc
Q 011491          311 GLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP--GTDESIGKLVQLLHKLIDLHEVQDI  388 (484)
Q Consensus       311 ~~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~--gde~~ieql~kQL~KLidVi~V~dl  388 (484)
                      .=+.-+|.+.+.|+||+|++|+.++++.|.||.+++... ...+...+++++.  ..+..+++|+.+|+++-.|.+|+-+
T Consensus        66 ~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i-~~~g~a~vs~tVevs~~~~~L~~Li~~L~~i~gV~~V~i~  144 (147)
T PRK04435         66 KGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSI-PLQGRANVTISIDTSSMEGDIDELLEKLRNLDGVEKVELI  144 (147)
T ss_pred             CCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEc-CCCCEEEEEEEEEeCChHHHHHHHHHHHHcCCCcEEEEEE
Confidence            335689999999999999999999999999999998743 2356777777776  3334899999999999999999865


Q ss_pred             C
Q 011491          389 T  389 (484)
Q Consensus       389 t  389 (484)
                      .
T Consensus       145 ~  145 (147)
T PRK04435        145 G  145 (147)
T ss_pred             e
Confidence            4

>PRK04435 hypothetical protein; Provisional

Probab=97.97  E-value=5.2e-05  Score=69.82  Aligned_cols=74  Identities=30%  Similarity=0.403  Sum_probs=59.7

Q ss_pred             EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-cEEEEEEe--CChhHHHHHHHHHhcCcceeEEEecC
Q 011491           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIVVS--GTERVLRQVVEQLNKLVNVIKVEDIS  152 (484)
Q Consensus        79 khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~~iTIVV~--gde~~veQI~kQL~KLidVikV~dlt  152 (484)
                      .-+|.+.+.|+||+|++|..++++.|.||.+++.....+. ..+++++.  ..+..+++|+.+|+++-.|.+|+-+.
T Consensus        69 ~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~~~~L~~Li~~L~~i~gV~~V~i~~  145 (147)
T PRK04435         69 IITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSMEGDIDELLEKLRNLDGVEKVELIG  145 (147)
T ss_pred             EEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCChHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            4589999999999999999999999999999987533222 23555444  44458999999999999999998654

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=97.93  E-value=6.3e-05  Score=60.60  Aligned_cols=70  Identities=9%  Similarity=0.268  Sum_probs=58.4

Q ss_pred             EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhcCcceeEEEecC
Q 011491           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS  152 (484)
Q Consensus        81 tISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~KLidVikV~dlt  152 (484)
                      .|.|...|++|+|+.|+.+++..|+||.++.+... ..-.+++.+. +...+++++++|.++-.|.+|..+.
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~i~l~i~v~-~~~~L~~li~~L~~i~gV~~V~R~~   71 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GRIYLNFPTI-EFEKLQTLMPEIRRIDGVEDVKTVP   71 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-CeEEEEeEec-CHHHHHHHHHHHhCCCCceEEEEee
Confidence            58899999999999999999999999999998653 2212555554 5678999999999999999998653

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=97.90  E-value=3.2e-05  Score=58.62  Aligned_cols=46  Identities=26%  Similarity=0.522  Sum_probs=39.0

Q ss_pred             EEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe
Q 011491          317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP  363 (484)
Q Consensus       317 LsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~  363 (484)
                      |++.+.|+||+|.|++.+|+++|+||+++.+.+++ .+...+-+.++
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~-~~~~~~~~~v~   46 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETR-GEFGILRLIFS   46 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEcc-CCcEEEEEEEC
Confidence            46789999999999999999999999999999886 45555555555

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=97.90  E-value=6.4e-05  Score=52.29  Aligned_cols=59  Identities=31%  Similarity=0.442  Sum_probs=50.2

Q ss_pred             EEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHH
Q 011491          317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLL  376 (484)
Q Consensus       317 LsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL  376 (484)
                      |++...|+||++.++++.|+++|+||.++........+..++++.+...+ .++.++++|
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l   59 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDG-DLEKLLEAL   59 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEEechH-HHHHHHHHh
Confidence            46788999999999999999999999999998776677788888888654 777777776

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=97.89  E-value=8.7e-05  Score=59.60  Aligned_cols=66  Identities=21%  Similarity=0.310  Sum_probs=55.5

Q ss_pred             EEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEeC--ChHHHHHHHHHHhcccce
Q 011491          317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPG--TDESIGKLVQLLHKLIDL  382 (484)
Q Consensus       317 LsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~-~~iSRiTIVV~g--de~~ieql~kQL~KLidV  382 (484)
                      +.+.++|+||.|.+|..+|+++|.||.+|.--|... ++-..+.|-+.|  ++..++++++.|++..+-
T Consensus         2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~~~~~   70 (75)
T cd04880           2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKRVTED   70 (75)
T ss_pred             EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhCCe
Confidence            567779999999999999999999999997777665 666677777788  578899999999986553

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=97.88  E-value=5.7e-05  Score=57.84  Aligned_cols=63  Identities=22%  Similarity=0.281  Sum_probs=52.4

Q ss_pred             EEEEEeCchhHHHHHHHHHhccCceeeeeeeeecC---CCCeEEEEEEEeCC-hHHHHHHHHHHhcc
Q 011491          317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE---KEGLSCITTVVPGT-DESIGKLVQLLHKL  379 (484)
Q Consensus       317 LsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te---~~~iSRiTIVV~gd-e~~ieql~kQL~KL  379 (484)
                      |.+.+.|+||.|.+|+.+++..|.||.++...+..   ..+...+.+.+... .+.++++++.|++.
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l~~~   67 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALREA   67 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence            45788999999999999999999999999987754   35777888887754 47788999998764

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=97.87  E-value=4.3e-05  Score=69.29  Aligned_cols=122  Identities=20%  Similarity=0.281  Sum_probs=80.8

Q ss_pred             ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhcCcceeEEEecCCchh
Q 011491           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPH  156 (484)
Q Consensus        77 ~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~KLidVikV~dlt~~~~  156 (484)
                      |+-.+||+++||+||-|..++..++..|+||..++.+.|.+.|++.++|+.++. ..++.+.               ..+
T Consensus         1 m~vKQISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~d~-A~~~Lee---------------~gF   64 (142)
T COG4747           1 MIVKQISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRPDE-AHSVLEE---------------AGF   64 (142)
T ss_pred             CceeEEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCChHH-HHHHHHH---------------CCc
Confidence            456789999999999999999999999999999999999999999999986554 3333322               222


Q ss_pred             hhhhheeEEEeCC--CCCHHHHHHHHHhcCcEEEEecCCEEEEEEe--------CChhHHHHHHHHhccCCcE
Q 011491          157 VERELMLIKLNGD--TSTWPEIMWLVDIFRAKVVDISEHALTIEVT--------GDPGKMVAVQRNLSKFGIK  219 (484)
Q Consensus       157 V~RELaLiKV~~~--~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~T--------G~~~KIdafi~~L~~fGIl  219 (484)
                      +-|+--.+-|..+  |..-   -.|++.++..  |++-+++--=++        =..+.+|+.++.|++-||.
T Consensus        65 ~Vr~~dVlaVEmeD~PG~l---~~I~~vl~d~--diNldYiYAFv~ek~KAlli~r~ed~d~~~~aLed~gi~  132 (142)
T COG4747          65 TVRETDVLAVEMEDVPGGL---SRIAEVLGDA--DINLDYIYAFVTEKQKALLIVRVEDIDRAIKALEDAGIK  132 (142)
T ss_pred             EEEeeeEEEEEecCCCCcH---HHHHHHHhhc--CcCceeeeeeeecCceEEEEEEhhHHHHHHHHHHHcCCe
Confidence            3333333333333  3333   3344444432  222233221111        1346789999999999975

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.87  E-value=9.5e-05  Score=58.48  Aligned_cols=66  Identities=17%  Similarity=0.258  Sum_probs=55.0

Q ss_pred             EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEe-CChhHHHHHHHHHhcCcceeE
Q 011491           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVS-GTERVLRQVVEQLNKLVNVIK  147 (484)
Q Consensus        81 tISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~-gde~~veQI~kQL~KLidVik  147 (484)
                      +|.+.+.|+||.|++|+.+++..|.||.++...... .+.  +.+++. .+...++++++.|+++-+|.-
T Consensus         1 ~l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~-~~~~~~~~~vev~~~~~l~~i~~~L~~i~gV~~   69 (74)
T cd04887           1 TLRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQG-RDYTVRDITVDAPSEEHAETIVAAVRALPEVKV   69 (74)
T ss_pred             CEEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEec-CCEEEEEEEEEcCCHHHHHHHHHHHhcCCCeEE
Confidence            478999999999999999999999999999987653 333  555555 467889999999999998764

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=97.84  E-value=5.9e-05  Score=60.81  Aligned_cols=63  Identities=21%  Similarity=0.314  Sum_probs=49.4

Q ss_pred             EEEEEeCchhHHHHHHHHHhccCceeeeeeeeecC----CCCeEEEEEEEeCCh-HHHHHHHHHHhcc
Q 011491          317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE----KEGLSCITTVVPGTD-ESIGKLVQLLHKL  379 (484)
Q Consensus       317 LsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te----~~~iSRiTIVV~gde-~~ieql~kQL~KL  379 (484)
                      +++...|+||++++|+.+|+++|.||.++.....+    ..+.-.|++.++..+ ..+.++.+.|+++
T Consensus         2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~l~~~l~~l   69 (81)
T cd04869           2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAGTDLDALREELEEL   69 (81)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCCCCHHHHHHHHHHH
Confidence            68999999999999999999999999999986655    336666677766443 2467777766654

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=97.84  E-value=0.00014  Score=53.44  Aligned_cols=68  Identities=25%  Similarity=0.326  Sum_probs=55.5

Q ss_pred             EEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-cEEEEEEe-CChhHHHHHHHHHhcCcceeEEE
Q 011491           82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIVVS-GTERVLRQVVEQLNKLVNVIKVE  149 (484)
Q Consensus        82 ISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~~iTIVV~-gde~~veQI~kQL~KLidVikV~  149 (484)
                      |.+.+.|+||.+++++.+|+..++||.++........ ..+.+.+. .+...++.++++|.++-.|.+|.
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~v~   70 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVRDLEHLARIMRKLRQIPGVIDVR   70 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEECCHHHHHHHHHHHhCCCCcEEEE
Confidence            4678999999999999999999999999998765422 33555554 45678999999999999998875

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>PRK07431 aspartate kinase; Provisional

Probab=97.82  E-value=0.0057  Score=67.20  Aligned_cols=287  Identities=13%  Similarity=0.136  Sum_probs=177.0

Q ss_pred             EEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-cEEEEEEeCChhHHHHHHHHHhcCcceeEEEecCCchhhhhhhee
Q 011491           85 FVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELML  163 (484)
Q Consensus        85 lVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~~iTIVV~gde~~veQI~kQL~KLidVikV~dlt~~~~V~RELaL  163 (484)
                      -+.++||.++||.+.|.+.|.||+.++.+..+.. .-+.++++.++  +++..+.|+++.+=++.    .+-.+.+++++
T Consensus       277 ~~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~~~~isf~i~~~d--~~~~~~~l~~l~~~~~~----~~i~~~~~~a~  350 (587)
T PRK07431        277 RVPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGNSNDIAFTVAENE--LKKAEAVAEAIAPALGG----AEVLVETNVAK  350 (587)
T ss_pred             cCCCcccHHHHHHHHHHHcCCcEEEEEeccCCCCCccEEEEEeHHH--HHHHHHHHHHHHHHcCC----CcEEEeCCeEE
Confidence            3568899999999999999999999987765432 23677775432  44444444433210100    11225678999


Q ss_pred             EEEeCCC-----CCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc-CCcEEEeeccceeeecCcCCCC
Q 011491          164 IKLNGDT-----STWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK-FGIKELARTGKIALRREKLGDT  237 (484)
Q Consensus       164 iKV~~~~-----~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~-fGIlE~aRTG~iAl~Rg~~~~~  237 (484)
                      |.|--..     .--..+++....++.+|.-++....-|-+.=+.+..+..++.|.. |.           +.+......
T Consensus       351 IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~sSe~~Is~vv~~~d~~~av~~Lh~~f~-----------~~~~~~~~~  419 (587)
T PRK07431        351 LSISGAGMMGRPGIAAKMFDTLAEAGINIRMISTSEVKVSCVIDAEDGDKALRAVCEAFE-----------LEDSQIEIN  419 (587)
T ss_pred             EEEECCCcccCccHHHHHHHHHHHCCCcEEEEEcCCCEEEEEEcHHHHHHHHHHHHHHhc-----------cCCcccccC
Confidence            9887643     233467888888888898887665666666666667777777653 32           111100000


Q ss_pred             cccccccccCCchhhhhccccccccccccccCCCCCCCCCCCCceeecCCCCCCcccccccccccccccCCCCCceEEEE
Q 011491          238 APFWNFSAASYPDLEEKKRTGIFIPETNQSLNGNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTL  317 (484)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdvy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~htL  317 (484)
                      +-.|+                                  ..+.-|-.+--.                     .++..-+|
T Consensus       420 ~~~~~----------------------------------~~~~~v~gIa~~---------------------~~~~~i~l  444 (587)
T PRK07431        420 PTASG----------------------------------QDEPEVRGVALD---------------------RNQAQLAI  444 (587)
T ss_pred             ccccC----------------------------------CCCCcEEEEEcc---------------------CCEEEEEE
Confidence            00000                                  000001111111                     12222333


Q ss_pred             EEEEeCchhHHHHHHHHHhccCceeeeeeeeec-CCCCeEEEEEEEeCC-hHHHHHHHHHHhcccceEEEeccCCchhHH
Q 011491          318 SMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPA-EKEGLSCITTVVPGT-DESIGKLVQLLHKLIDLHEVQDITHLPFAE  395 (484)
Q Consensus       318 silVeN~pGVL~RVtglFsRRGyNIeSLtVg~t-e~~~iSRiTIVV~gd-e~~ieql~kQL~KLidVi~V~dlt~~~~V~  395 (484)
                      . .+.++||.+.++.+.+.++|.||+.++.... +..+.-.++++++-+ -..+.++.++|.+..+...+       .+.
T Consensus       445 ~-~~~~~~g~~a~if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~~~~~~~~~~l~~l~~~~~~~~i-------~~~  516 (587)
T PRK07431        445 R-NVPDRPGMAASIFGALAEANISVDMIVQSQRCRSDGTRDISFTVPKEDREAAQKVLRELAKQLPGAEV-------EDG  516 (587)
T ss_pred             C-CCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcHHHHHHHHHHHHHHHHhcCCceE-------EEe
Confidence            2 4568899999999999999999999987643 334566788888843 23456666666655444333       234


Q ss_pred             HhhheeEEecCcc-c----hHHHHHHHHHcCcEEEEecCCEEEEEEeCCHHHHHHHHHHhc
Q 011491          396 RELILIKIAVNTA-A----RRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLE  451 (484)
Q Consensus       396 REL~LIKV~~~~~-~----r~eI~~la~ifrakIVDvs~~si~iE~TG~~~Kidafi~lL~  451 (484)
                      +.+++|-|--..- .    -..+++.....+.++.-++...+-|-+.=+.+..+..++.|.
T Consensus       517 ~~va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~~S~~~Is~vV~~~~~~~av~~Lh  577 (587)
T PRK07431        517 PAIAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIATSEIRTSCVVAEDDGVKALQAVH  577 (587)
T ss_pred             CCeEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEeeccceEEEEEEeHHHHHHHHHHHH
Confidence            5677877754322 2    247888888999999999988788877777777777776664

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=97.82  E-value=8.6e-05  Score=58.23  Aligned_cols=63  Identities=17%  Similarity=0.239  Sum_probs=47.9

Q ss_pred             EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhc
Q 011491          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK  378 (484)
Q Consensus       315 htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~K  378 (484)
                      |.+++.+.|+||.|.+++++|+..|+||.++...+.....-..+.+++..+ +..+++.+-|++
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~-~~~~~~~~~L~~   64 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQ-EDRERAKEILKE   64 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCH-HHHHHHHHHHHH
Confidence            689999999999999999999999999999987765322223455666643 356677776654

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=97.81  E-value=0.00018  Score=58.72  Aligned_cols=67  Identities=22%  Similarity=0.375  Sum_probs=53.0

Q ss_pred             EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEeCC--hHHHHHHHHHHhcccc
Q 011491          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPGT--DESIGKLVQLLHKLID  381 (484)
Q Consensus       315 htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~-~~iSRiTIVV~gd--e~~ieql~kQL~KLid  381 (484)
                      .+|.+.+.|+||.|.+|..+|+++|+||.|+..-|..+ .....+-+-+.|.  ++.+.+++++|++..+
T Consensus         2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~~~~   71 (80)
T cd04905           2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKRLTE   71 (80)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhCC
Confidence            46788889999999999999999999999999888754 3444444445564  6788899999988544

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=97.78  E-value=0.00011  Score=57.62  Aligned_cols=61  Identities=20%  Similarity=0.247  Sum_probs=48.6

Q ss_pred             EEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecC--CCcEEEEEEeCChhHHHHHHHHHhc
Q 011491           80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV--DKALFTIVVSGTERVLRQVVEQLNK  141 (484)
Q Consensus        80 htISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Te--d~~~iTIVV~gde~~veQI~kQL~K  141 (484)
                      |.+++.+.|+||.|.+++++|+..|+||.++......  ..+.+.+++..++ ..+++.+-|++
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~~-~~~~~~~~L~~   64 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQE-DRERAKEILKE   64 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCHH-HHHHHHHHHHH
Confidence            6899999999999999999999999999999877653  2456777777443 56677766654

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=97.77  E-value=0.00019  Score=58.58  Aligned_cols=65  Identities=22%  Similarity=0.397  Sum_probs=51.7

Q ss_pred             EEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-cEEE--EEEeCC--hhHHHHHHHHHhcCcc
Q 011491           80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFT--IVVSGT--ERVLRQVVEQLNKLVN  144 (484)
Q Consensus        80 htISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~~iT--IVV~gd--e~~veQI~kQL~KLid  144 (484)
                      ..|.+.+.|+||.|.+|..+|++.|+||.|+..-+..+. ..++  +-+++.  +..+++++++|++..+
T Consensus         2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~~~~   71 (80)
T cd04905           2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKRLTE   71 (80)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhCC
Confidence            367888899999999999999999999999998887653 3344  445554  6778889999987544

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=97.77  E-value=0.00015  Score=57.81  Aligned_cols=66  Identities=17%  Similarity=0.278  Sum_probs=50.0

Q ss_pred             EEEEEeCchhHHHHHHHHHhccCceeeeeeeeecC-CCCeEEEEEEEe-CChHHHHHHHHHHhcccce
Q 011491          317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE-KEGLSCITTVVP-GTDESIGKLVQLLHKLIDL  382 (484)
Q Consensus       317 LsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te-~~~iSRiTIVV~-gde~~ieql~kQL~KLidV  382 (484)
                      |++.+.|+||.|.+++.++++.|.||.|+...+.. +.+...+.+.+. .++..++.|.+.|++-.+|
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~e~~~~~~~i~~~L~~~~~~   69 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPMDRSKENELIEELKAKFTV   69 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEEecchHHHHHHHHHhCcccE
Confidence            68899999999999999999999999999887652 344444444443 2334588888888776444

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=97.73  E-value=5.1e-05  Score=63.07  Aligned_cols=70  Identities=14%  Similarity=0.181  Sum_probs=54.5

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh--HHHHHHHHHHhcccceEEE
Q 011491          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD--ESIGKLVQLLHKLIDLHEV  385 (484)
Q Consensus       314 ~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde--~~ieql~kQL~KLidVi~V  385 (484)
                      ++.+++...|+||++++|+++|+.+|.||..+.....  .+.-.|.+++....  ..++++.+.|++|-+-..+
T Consensus         1 ~~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~--~~~f~~~~~v~~~~~~~~~~~L~~~l~~l~~~~~l   72 (88)
T cd04872           1 KAVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIM--DGYFTMIMIVDISESNLDFAELQEELEELGKELGV   72 (88)
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhh--CCccEEEEEEEeCCCCCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999999999999999999987763  34455555555443  4588888888877655443

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=97.71  E-value=6.1e-05  Score=62.60  Aligned_cols=69  Identities=20%  Similarity=0.298  Sum_probs=54.9

Q ss_pred             EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCCh--hHHHHHHHHHhcCcceeEEE
Q 011491           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTE--RVLRQVVEQLNKLVNVIKVE  149 (484)
Q Consensus        79 khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gde--~~veQI~kQL~KLidVikV~  149 (484)
                      ++.+++...|+||++++|++.|+++|.||..+.....  .+.  +++++....  ..++++.+.|++|-+-..++
T Consensus         1 ~~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~--~~~f~~~~~v~~~~~~~~~~~L~~~l~~l~~~~~l~   73 (88)
T cd04872           1 KAVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIM--DGYFTMIMIVDISESNLDFAELQEELEELGKELGVK   73 (88)
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhh--CCccEEEEEEEeCCCCCCHHHHHHHHHHHHHHcCCE
Confidence            5789999999999999999999999999999987753  333  666776543  45888998888877554443

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=97.70  E-value=0.00024  Score=57.09  Aligned_cols=64  Identities=17%  Similarity=0.329  Sum_probs=52.1

Q ss_pred             EEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCC-CcE--EEEEEeC--ChhHHHHHHHHHhcCcce
Q 011491           82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD-KAL--FTIVVSG--TERVLRQVVEQLNKLVNV  145 (484)
Q Consensus        82 ISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted-~~~--iTIVV~g--de~~veQI~kQL~KLidV  145 (484)
                      +.+.++|+||.|++|...|+++|+||.+|.--|... ++.  +-|-+.|  ++..++++++.|.+..+-
T Consensus         2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~~~~~   70 (75)
T cd04880           2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKRVTED   70 (75)
T ss_pred             EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhCCe
Confidence            567789999999999999999999999997777655 333  5566677  578899999999886553

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=97.68  E-value=0.00015  Score=55.39  Aligned_cols=48  Identities=23%  Similarity=0.309  Sum_probs=41.9

Q ss_pred             EEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC
Q 011491          317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG  364 (484)
Q Consensus       317 LsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~g  364 (484)
                      +.+.+.|+||.|.+++++|++.|+||.++...+....+..++.+.+++
T Consensus         2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~   49 (65)
T cd04882           2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTED   49 (65)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCC
Confidence            678999999999999999999999999998876655677788888875

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=97.68  E-value=0.00015  Score=58.52  Aligned_cols=61  Identities=25%  Similarity=0.359  Sum_probs=47.6

Q ss_pred             EEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCC----CcE--EEEEEeCCh-hHHHHHHHHHhcC
Q 011491           82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD----KAL--FTIVVSGTE-RVLRQVVEQLNKL  142 (484)
Q Consensus        82 ISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted----~~~--iTIVV~gde-~~veQI~kQL~KL  142 (484)
                      +++...|+||.+++|+.+|+++|.||.++.....+.    .++  |++.++..+ ..+.++.+.|+++
T Consensus         2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~l~~~l~~l   69 (81)
T cd04869           2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAGTDLDALREELEEL   69 (81)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCCCCHHHHHHHHHHH
Confidence            789999999999999999999999999999865542    243  566666543 3577777777655

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=97.64  E-value=0.00022  Score=56.01  Aligned_cols=59  Identities=31%  Similarity=0.454  Sum_probs=46.2

Q ss_pred             EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEeCChhHHHHHHHHHhc
Q 011491           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTERVLRQVVEQLNK  141 (484)
Q Consensus        81 tISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~iTIVV~gde~~veQI~kQL~K  141 (484)
                      .+++.++|+||.|.+++.+|+++|+||+++...+....+  .+.+.+.+++  .+++.+.|.+
T Consensus         3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~--~~~~~~~L~~   63 (72)
T cd04883           3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMN--PRPIIEDLRR   63 (72)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCC--HHHHHHHHHH
Confidence            578999999999999999999999999999887764444  3677776544  2366666654

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=97.59  E-value=0.00036  Score=55.61  Aligned_cols=63  Identities=13%  Similarity=0.230  Sum_probs=47.3

Q ss_pred             EEEEEcCchhHHHHHHHHHhccCceeeeEeeeec--CC-CcE--EEEEEeCChhHHHHHHHHHhcCcce
Q 011491           82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLN--VD-KAL--FTIVVSGTERVLRQVVEQLNKLVNV  145 (484)
Q Consensus        82 ISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~T--ed-~~~--iTIVV~gde~~veQI~kQL~KLidV  145 (484)
                      +++.+.|+||.|.+++.++++.|.||.|+.....  +. ...  +++.+.. +..++.|.+.|.+-.+|
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~e~-~~~~~~i~~~L~~~~~~   69 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPMD-RSKENELIEELKAKFTV   69 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEEec-chHHHHHHHHHhCcccE
Confidence            6889999999999999999999999999988765  22 223  3443433 33488888888776444

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=97.56  E-value=0.00033  Score=53.60  Aligned_cols=61  Identities=15%  Similarity=0.259  Sum_probs=47.3

Q ss_pred             EEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCC---CcE--EEEEEeC-ChhHHHHHHHHHhcC
Q 011491           82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD---KAL--FTIVVSG-TERVLRQVVEQLNKL  142 (484)
Q Consensus        82 ISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted---~~~--iTIVV~g-de~~veQI~kQL~KL  142 (484)
                      |.+.+.|+||.|.+|+.+++..|.||.++...+..+   .+.  +.+.+.. +...++++++.|.+.
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l~~~   67 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALREA   67 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence            457889999999999999999999999999876532   332  5555543 346788999988764

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=97.52  E-value=0.00056  Score=77.15  Aligned_cols=90  Identities=16%  Similarity=0.223  Sum_probs=73.5

Q ss_pred             cccccccccccccCCCCCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHH
Q 011491          294 NQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKL  372 (484)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gde~~ieql  372 (484)
                      ..+++.+|+.    +..+.-.-.|.|.+.|++|+|+.|+.+++.-+.||.+++... .+.+...+.+.+. .+-+.+++|
T Consensus       610 er~i~v~W~~----~~~~~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~-~~~~~~~~~~~ieV~~~~~L~~i  684 (702)
T PRK11092        610 EKFMAVEWDK----ETEQEFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEE-KDGRVYSAFIRLTARDRVHLANI  684 (702)
T ss_pred             ceeEEeEECC----CCCceeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEE-cCCCEEEEEEEEEECCHHHHHHH
Confidence            4688999972    222233569999999999999999999999999999999753 4456777776665 577899999


Q ss_pred             HHHHhcccceEEEecc
Q 011491          373 VQLLHKLIDLHEVQDI  388 (484)
Q Consensus       373 ~kQL~KLidVi~V~dl  388 (484)
                      +++|.++-+|.+|.-.
T Consensus       685 ~~~Lr~i~~V~~V~R~  700 (702)
T PRK11092        685 MRKIRVMPDVIKVTRN  700 (702)
T ss_pred             HHHHhCCCCcceEEEc
Confidence            9999999999999764

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=97.50  E-value=0.00058  Score=55.67  Aligned_cols=64  Identities=28%  Similarity=0.393  Sum_probs=52.7

Q ss_pred             EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhcC
Q 011491           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKL  142 (484)
Q Consensus        79 khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~KL  142 (484)
                      ...|+++=.|+||++++|++.+++.|.||..+.....++.-.+.+.+++++..++++.+.|+++
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~~~~~~~l~~~L~~l   65 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIPEDSLERLESALEEL   65 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEESHHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeCcccHHHHHHHHHHH
Confidence            4689999999999999999999999999999998877654347777888888899999999876

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=97.49  E-value=0.00029  Score=56.49  Aligned_cols=64  Identities=17%  Similarity=0.182  Sum_probs=48.5

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh--HHHHHHHHHHhcc
Q 011491          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD--ESIGKLVQLLHKL  379 (484)
Q Consensus       316 tLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde--~~ieql~kQL~KL  379 (484)
                      +|++...|+||++++|++.|+.+|.||..+........+.-.|.+.+..+.  -.++++.+.|+++
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~l   66 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAPV   66 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Confidence            478899999999999999999999999999877533445555555555443  2577777777665

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=97.46  E-value=0.00064  Score=47.14  Aligned_cols=57  Identities=30%  Similarity=0.425  Sum_probs=45.4

Q ss_pred             EEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEeCChhHHHHHHHHH
Q 011491           82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTERVLRQVVEQL  139 (484)
Q Consensus        82 ISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~iTIVV~gde~~veQI~kQL  139 (484)
                      |++...|+||.+.++++.|+++|+||.++........+  .+++.+...+ .++.++++|
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l   59 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDG-DLEKLLEAL   59 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEEechH-HHHHHHHHh
Confidence            46888999999999999999999999999987764343  3667776544 677777765

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=97.44  E-value=0.00039  Score=55.77  Aligned_cols=62  Identities=15%  Similarity=0.193  Sum_probs=47.9

Q ss_pred             EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCCh--hHHHHHHHHHhcC
Q 011491           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTE--RVLRQVVEQLNKL  142 (484)
Q Consensus        81 tISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gde--~~veQI~kQL~KL  142 (484)
                      +|++...|+||++++|++.|+.+|+||..+........+.  |.+.+..+.  ..++++.+.|+++
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~l   66 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAPV   66 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Confidence            4789999999999999999999999999998765334444  555555553  2578888877665

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=97.44  E-value=0.00095  Score=53.73  Aligned_cols=64  Identities=14%  Similarity=0.239  Sum_probs=47.3

Q ss_pred             EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC------ChHHHHHHHHHHhc
Q 011491          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG------TDESIGKLVQLLHK  378 (484)
Q Consensus       315 htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~g------de~~ieql~kQL~K  378 (484)
                      ..+.|...|+||+|.+|+++|++.|+||.+-.+..+.+.-+--.-.+.+.      +++..+++.+.|.+
T Consensus         2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~   71 (73)
T cd04900           2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALED   71 (73)
T ss_pred             EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHh
Confidence            36889999999999999999999999999998877755544443333332      34456667666654

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=97.42  E-value=0.00056  Score=52.26  Aligned_cols=46  Identities=22%  Similarity=0.315  Sum_probs=37.7

Q ss_pred             EEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEeC
Q 011491           82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSG  127 (484)
Q Consensus        82 ISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~iTIVV~g  127 (484)
                      +.+.+.|+||.|++++++|++.|+||.++...+....+  .+.+.+++
T Consensus         2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~   49 (65)
T cd04882           2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTED   49 (65)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCC
Confidence            68899999999999999999999999999876654333  35666654

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=97.42  E-value=0.00096  Score=51.43  Aligned_cols=49  Identities=24%  Similarity=0.447  Sum_probs=40.1

Q ss_pred             EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh
Q 011491           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE  129 (484)
Q Consensus        81 tISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde  129 (484)
                      .|.|.+.|+||+|++++++|+..|+||.++.+...++....++.+.+.+
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~   50 (70)
T cd04873           2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSD   50 (70)
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCC
Confidence            5789999999999999999999999999999887665334566665433

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=97.39  E-value=0.00045  Score=55.90  Aligned_cols=63  Identities=17%  Similarity=0.204  Sum_probs=48.2

Q ss_pred             EEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChh-HHHHHHHHHhcCcc
Q 011491           82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTER-VLRQVVEQLNKLVN  144 (484)
Q Consensus        82 ISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~-~veQI~kQL~KLid  144 (484)
                      +++.-.|+||.+++|++.|+.+|.||..++.......=.+.+.+..++. .++++.+.|+++-+
T Consensus         2 vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~~~~~~l~~~l~~l~~   65 (75)
T cd04870           2 ITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDSADSEALLKDLLFKAH   65 (75)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            6888999999999999999999999999975544322125666665543 67888888877643

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=97.38  E-value=0.00042  Score=56.03  Aligned_cols=62  Identities=18%  Similarity=0.225  Sum_probs=49.4

Q ss_pred             EEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChH-HHHHHHHHHhccc
Q 011491          317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDE-SIGKLVQLLHKLI  380 (484)
Q Consensus       317 LsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~-~ieql~kQL~KLi  380 (484)
                      +++.-.|+||++++|+++|+.+|.||..+......  +.-.+.+.+...+. .++++.+.|+++-
T Consensus         2 vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~--~~f~~~~~v~~p~~~~~~~l~~~l~~l~   64 (75)
T cd04870           2 ITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIH--GRLSLGILVQIPDSADSEALLKDLLFKA   64 (75)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEc--CeeEEEEEEEcCCCCCHHHHHHHHHHHH
Confidence            67888999999999999999999999999755543  45667777776544 6788888777664

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG4492 PheB ACT domain-containing protein [General function prediction only]

Probab=97.36  E-value=0.0009  Score=61.76  Aligned_cols=75  Identities=23%  Similarity=0.365  Sum_probs=63.8

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe--CChHHHHHHHHHHhcccceEEEecc
Q 011491          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP--GTDESIGKLVQLLHKLIDLHEVQDI  388 (484)
Q Consensus       313 ~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~--gde~~ieql~kQL~KLidVi~V~dl  388 (484)
                      +.+||++.++|+.|.|+++..+.++++.||-+++..-. -.|-..+|+.++  +-+..++.|+..|.|+-.|.+|+-+
T Consensus        71 ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ip-l~g~Anvtlsi~~ssm~~~V~~ii~kl~k~e~V~kVeiv  147 (150)
T COG4492          71 RIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIP-LQGRANVTLSIDTSSMEKDVDKIIEKLRKVEGVEKVEIV  147 (150)
T ss_pred             eEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccc-cCceeeEEEEEEchhhhhhHHHHHHHHhcccceeEEEEe
Confidence            56899999999999999999999999999988776532 245566666665  7788999999999999999999854

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=97.35  E-value=0.0015  Score=50.35  Aligned_cols=49  Identities=20%  Similarity=0.335  Sum_probs=40.2

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh
Q 011491          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD  366 (484)
Q Consensus       316 tLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde  366 (484)
                      .|.|.+.|+||+|.+++++|+..|.||.++.+...++  ....++.+.+.+
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~--~~~~~~~v~~~~   50 (70)
T cd04873           2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGE--RALDVFYVTDSD   50 (70)
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCC--EEEEEEEEECCC
Confidence            5789999999999999999999999999999877654  455666665433

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=97.34  E-value=0.0012  Score=75.05  Aligned_cols=91  Identities=20%  Similarity=0.356  Sum_probs=74.5

Q ss_pred             cccccccccccccCCCCCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHH
Q 011491          294 NQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKL  372 (484)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gde~~ieql  372 (484)
                      +.+++..|+.    +....-.-.|.|.+.|++|+|+.|+.+++.-+.||.++++......+...|++++. .+-+.+.++
T Consensus       650 eR~I~V~W~~----~~~~~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~~~~L~~l  725 (743)
T PRK10872        650 ERIVDAVWGE----SYSSGYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRV  725 (743)
T ss_pred             ceEEEeEecC----CCCceeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECCHHHHHHH
Confidence            3578999972    11223356899999999999999999999999999999986544367777777776 577899999


Q ss_pred             HHHHhcccceEEEecc
Q 011491          373 VQLLHKLIDLHEVQDI  388 (484)
Q Consensus       373 ~kQL~KLidVi~V~dl  388 (484)
                      +++|.++-+|.+|.-.
T Consensus       726 ~~~L~~i~~V~~v~R~  741 (743)
T PRK10872        726 LGKLNQVPDVIDARRL  741 (743)
T ss_pred             HHHHhcCCCcCeEEec
Confidence            9999999999999764

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=97.31  E-value=0.0014  Score=73.84  Aligned_cols=88  Identities=16%  Similarity=0.208  Sum_probs=72.9

Q ss_pred             cccccccccccccCCCCCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHH
Q 011491          294 NQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKL  372 (484)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gde~~ieql  372 (484)
                      ..+++..|+.    +....-..+|.|.+.|++|+|+.|+.+++.-+.||.++++... ..+...|.+++. .+-+.+..|
T Consensus       594 er~I~v~W~~----~~~~~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~-~~~~~~~~~~ieV~~~~~L~~i  668 (683)
T TIGR00691       594 EKIIEVEWNA----SKPRRFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTY-GKREAILNITVEIKNYKHLLKI  668 (683)
T ss_pred             ccEEEEEecC----CCCceeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEc-CCCEEEEEEEEEECCHHHHHHH
Confidence            4688999972    2222346699999999999999999999999999999999654 457777777765 588899999


Q ss_pred             HHHHhcccceEEEe
Q 011491          373 VQLLHKLIDLHEVQ  386 (484)
Q Consensus       373 ~kQL~KLidVi~V~  386 (484)
                      +.+|.++-+|.+|.
T Consensus       669 i~~L~~i~~V~~v~  682 (683)
T TIGR00691       669 MLKIKTKNDVIVVK  682 (683)
T ss_pred             HHHHhCCCCceEEe
Confidence            99999999999885

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=97.29  E-value=0.0017  Score=50.59  Aligned_cols=61  Identities=18%  Similarity=0.235  Sum_probs=45.5

Q ss_pred             EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeC------ChhHHHHHHHHHhc
Q 011491           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSG------TERVLRQVVEQLNK  141 (484)
Q Consensus        81 tISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~g------de~~veQI~kQL~K  141 (484)
                      .|.|...|+||+|++|+++|+..|+||.++.+....+....++.+.+      +++..+++.+.|.+
T Consensus         2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~   68 (70)
T cd04899           2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDPERQEALRAALGE   68 (70)
T ss_pred             EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHh
Confidence            57899999999999999999999999999998765543334555532      23455566666654

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK05092 PII uridylyl-transferase; Provisional

Probab=97.27  E-value=0.014  Score=67.72  Aligned_cols=66  Identities=17%  Similarity=0.165  Sum_probs=49.3

Q ss_pred             EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe------CChHHHHHHHHHHhcccc
Q 011491          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP------GTDESIGKLVQLLHKLID  381 (484)
Q Consensus       315 htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~------gde~~ieql~kQL~KLid  381 (484)
                      ..+.|...|+||+|.+|+++|++.|+||.+..+.. .....--+-.+.+      .+++..+.|.+.|.+.++
T Consensus       844 t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T-~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~  915 (931)
T PRK05092        844 TVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIAT-YGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALA  915 (931)
T ss_pred             EEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEE-cCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhc
Confidence            68999999999999999999999999999999984 4433333333323      234457778888877664

>COG4492 PheB ACT domain-containing protein [General function prediction only]

Probab=97.25  E-value=0.0015  Score=60.28  Aligned_cols=76  Identities=26%  Similarity=0.375  Sum_probs=62.8

Q ss_pred             ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeee-cCCCcEEEEEE--eCChhHHHHHHHHHhcCcceeEEEecC
Q 011491           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGL-NVDKALFTIVV--SGTERVLRQVVEQLNKLVNVIKVEDIS  152 (484)
Q Consensus        77 ~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~-Ted~~~iTIVV--~gde~~veQI~kQL~KLidVikV~dlt  152 (484)
                      -+.+||++.++|+.|.|+++....++++.||-+++..- -+...-+||.+  .+-+..++.|+..|.|+-.|.+|+-+.
T Consensus        70 ~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~ssm~~~V~~ii~kl~k~e~V~kVeivg  148 (150)
T COG4492          70 ERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTSSMEKDVDKIIEKLRKVEGVEKVEIVG  148 (150)
T ss_pred             ceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEchhhhhhHHHHHHHHhcccceeEEEEee
Confidence            46789999999999999999999999999998888653 22223366654  467888999999999999999998653

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=97.25  E-value=0.0024  Score=52.07  Aligned_cols=64  Identities=22%  Similarity=0.368  Sum_probs=52.9

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcc
Q 011491          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKL  379 (484)
Q Consensus       314 ~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KL  379 (484)
                      ...|++.-.|+||++++|++.+++.|.||..+.......  .-.+.+.+.++++..+++.+.|+++
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~--~f~~~~~v~~~~~~~~~l~~~L~~l   65 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGG--RFTLIMLVSIPEDSLERLESALEEL   65 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETT--EEEEEEEEEESHHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcC--eEEEEEEEEeCcccHHHHHHHHHHH
Confidence            468999999999999999999999999999988887653  4567888888888999999999876

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=97.23  E-value=0.0017  Score=52.79  Aligned_cols=62  Identities=16%  Similarity=0.231  Sum_probs=48.1

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe----C----ChHHHHHHHHHHhcc
Q 011491          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP----G----TDESIGKLVQLLHKL  379 (484)
Q Consensus       316 tLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~----g----de~~ieql~kQL~KL  379 (484)
                      +|+++..|+||+|.+|+++|++.|.||.+-.+...  .+..--++.|.    |    +++..+++.+.|.+.
T Consensus         2 ~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~--~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~   71 (74)
T cd04925           2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTH--NGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNV   71 (74)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEE--CCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999888854  34444455542    2    345677888887764

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=97.17  E-value=0.0018  Score=52.55  Aligned_cols=62  Identities=18%  Similarity=0.249  Sum_probs=46.4

Q ss_pred             EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEe----C----ChhHHHHHHHHHhcC
Q 011491           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVS----G----TERVLRQVVEQLNKL  142 (484)
Q Consensus        81 tISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~----g----de~~veQI~kQL~KL  142 (484)
                      +|+|+..|+||+|++|++.|++.|.||.+-.+....+.-.-++.|.    +    +++..+++.+.|.+.
T Consensus         2 ~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~   71 (74)
T cd04925           2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNV   71 (74)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999985522222344432    2    345577787777664

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=97.17  E-value=0.0024  Score=51.56  Aligned_cols=45  Identities=18%  Similarity=0.347  Sum_probs=36.8

Q ss_pred             EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEE
Q 011491           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVV  125 (484)
Q Consensus        81 tISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV  125 (484)
                      .+.|.+.|+||+|.+|+++|++.|+||.|..+...++....++.+
T Consensus         3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v   47 (72)
T cd04926           3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYV   47 (72)
T ss_pred             EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEE
Confidence            578899999999999999999999999999987553322355555

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=97.17  E-value=0.0022  Score=52.57  Aligned_cols=63  Identities=14%  Similarity=0.194  Sum_probs=47.4

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCC-----hHHHHHHHHHHhc
Q 011491          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT-----DESIGKLVQLLHK  378 (484)
Q Consensus       316 tLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd-----e~~ieql~kQL~K  378 (484)
                      +|.|...|+||+|.++++.|++.|+||.+-.+..+.+.-.-..-.|.+.+     ++..+++.+.|.+
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~   69 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRA   69 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999887666544444444422     2345556666654

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=97.15  E-value=0.0031  Score=50.76  Aligned_cols=61  Identities=28%  Similarity=0.387  Sum_probs=44.9

Q ss_pred             EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE-EEEEEe---C----ChhHHHHHHHHHhc
Q 011491           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL-FTIVVS---G----TERVLRQVVEQLNK  141 (484)
Q Consensus        81 tISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~-iTIVV~---g----de~~veQI~kQL~K  141 (484)
                      .+.|...|+||+|.+|+++|++.|+||.+..+..+.+.-. =++.|.   +    +++..+++.+.|.+
T Consensus         3 ~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~   71 (73)
T cd04900           3 EVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALED   71 (73)
T ss_pred             EEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHh
Confidence            6889999999999999999999999999999877744422 233332   1    34456666666654

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=97.10  E-value=0.0044  Score=48.33  Aligned_cols=62  Identities=24%  Similarity=0.246  Sum_probs=45.9

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC------ChHHHHHHHHHHhcc
Q 011491          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG------TDESIGKLVQLLHKL  379 (484)
Q Consensus       316 tLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~g------de~~ieql~kQL~KL  379 (484)
                      .|.|...|+||+|.+|+++|+..|.||.++.+....+  ..-.++.+.+      +++..++|.+.|.+.
T Consensus         2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~--~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~~   69 (70)
T cd04899           2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGE--RAEDVFYVTDADGQPLDPERQEALRAALGEA   69 (70)
T ss_pred             EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCC--EEEEEEEEECCCCCcCCHHHHHHHHHHHHhh
Confidence            4788999999999999999999999999999876543  4445555531      234555666666543

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=97.03  E-value=0.004  Score=50.21  Aligned_cols=46  Identities=17%  Similarity=0.276  Sum_probs=37.8

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe
Q 011491          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP  363 (484)
Q Consensus       316 tLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~  363 (484)
                      .+.|.+.|+||+|.+|+++|++.|+||.|..+.+.+  +..-.++.+.
T Consensus         3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~--~~~~d~f~v~   48 (72)
T cd04926           3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQG--DMAVNVFYVT   48 (72)
T ss_pred             EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCC--CeEEEEEEEE
Confidence            578899999999999999999999999999887553  3455566653

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=97.01  E-value=0.0055  Score=49.86  Aligned_cols=68  Identities=12%  Similarity=0.169  Sum_probs=55.2

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEeCChHHHHHHHHHHhcccceE
Q 011491          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPGTDESIGKLVQLLHKLIDLH  383 (484)
Q Consensus       316 tLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~-~~iSRiTIVV~gde~~ieql~kQL~KLidVi  383 (484)
                      +|.+.+.|+||.|.+|...|+.+|+|+..|.--|... ++-..+-|-+.|+++.+++++++|++...=.
T Consensus         2 sl~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~~~~~~   70 (74)
T cd04904           2 SLIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRRVVADV   70 (74)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHHhcCeE
Confidence            4556668999999999999999999999999888764 4445566667788888999999998865433

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=96.98  E-value=0.0025  Score=52.10  Aligned_cols=63  Identities=22%  Similarity=0.317  Sum_probs=46.9

Q ss_pred             EEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhcC
Q 011491           80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKL  142 (484)
Q Consensus        80 htISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~KL  142 (484)
                      .+|++.-.|+||..++|+++++.+|.||..+..-.....-.|.+.++.+....+++.+.|+++
T Consensus         2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~~~~~~~l~~~l~~~   64 (77)
T cd04893           2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGSWDAIAKLEAALPGL   64 (77)
T ss_pred             EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEeccccHHHHHHHHHHH
Confidence            578999999999999999999999999999988763222225556665544566666655544

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=96.96  E-value=0.0062  Score=54.40  Aligned_cols=72  Identities=15%  Similarity=0.125  Sum_probs=58.4

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEeCChHHHHHHHHHHhcccceEEE
Q 011491          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPGTDESIGKLVQLLHKLIDLHEV  385 (484)
Q Consensus       314 ~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~-~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V  385 (484)
                      +.+|.+.+.|+||.|.+|...|+.+|+|+.+|.--|+.. ++-..+-|-+.|+.+.+.+++++|.+...-++|
T Consensus        41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg~~~~~~~aL~~L~~~~~~~kv  113 (115)
T cd04930          41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVHRSDLLQLISSLRQVAEDVRL  113 (115)
T ss_pred             cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEeCHHHHHHHHHHHHHhcCeeEe
Confidence            678888889999999999999999999999999988743 344556666778777899999999886654333

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=96.94  E-value=0.031  Score=64.18  Aligned_cols=65  Identities=22%  Similarity=0.302  Sum_probs=49.1

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-C---ChHHHHHHHHHHhc
Q 011491          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-G---TDESIGKLVQLLHK  378 (484)
Q Consensus       314 ~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~-g---de~~ieql~kQL~K  378 (484)
                      ...+.|...|+||+|.+|+.+|+.+|+||.+..+........--+.++.. |   +++..+.|.++|.+
T Consensus       779 ~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~~  847 (850)
T TIGR01693       779 ATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLAA  847 (850)
T ss_pred             eEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCCCCCHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999998766544444444422 2   34556677766654

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=96.94  E-value=0.0056  Score=49.79  Aligned_cols=67  Identities=16%  Similarity=0.264  Sum_probs=53.1

Q ss_pred             EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-cE--EEEEEeCChhHHHHHHHHHhcCcceeE
Q 011491           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-AL--FTIVVSGTERVLRQVVEQLNKLVNVIK  147 (484)
Q Consensus        81 tISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~~--iTIVV~gde~~veQI~kQL~KLidVik  147 (484)
                      +|.+.+.|+||.|.+|...|+.+|+|+..|---|.... ..  +=|-+.|++..+++++++|.+...=++
T Consensus         2 sl~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~~~~~~~   71 (74)
T cd04904           2 SLIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRRVVADVN   71 (74)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHHhcCeEE
Confidence            45667789999999999999999999999998886654 22  445566777789999999988654333

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=96.92  E-value=0.0043  Score=50.90  Aligned_cols=61  Identities=16%  Similarity=0.304  Sum_probs=44.6

Q ss_pred             EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE-EEEEE-eC-----ChhHHHHHHHHHhc
Q 011491           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL-FTIVV-SG-----TERVLRQVVEQLNK  141 (484)
Q Consensus        81 tISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~-iTIVV-~g-----de~~veQI~kQL~K  141 (484)
                      +|.|+..|+||+|.++++.|++.|+||.+-.+..|.+.-. =++.| +.     +++..+++.+.|.+
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~   69 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRA   69 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999987755532 23333 22     22445556665543

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=96.86  E-value=0.0065  Score=49.86  Aligned_cols=43  Identities=14%  Similarity=0.240  Sum_probs=37.1

Q ss_pred             EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEE
Q 011491          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSC  357 (484)
Q Consensus       315 htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSR  357 (484)
                      |.+.|+..|+||++.+++|+|++.|+||.+-.+-.+.+.-.--
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LD   44 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALD   44 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEE
Confidence            6889999999999999999999999999998887775544333

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=96.84  E-value=0.0024  Score=58.18  Aligned_cols=123  Identities=18%  Similarity=0.233  Sum_probs=79.4

Q ss_pred             ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEeccCCc
Q 011491          312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHL  391 (484)
Q Consensus       312 ~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dlt~~  391 (484)
                      |+-..||+++||+||=|..++..+..-|+||..++.+.|.+.||-||  +|+- .+...+..+.-.   .+.++      
T Consensus         1 m~vKQISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRm--vV~~-~d~A~~~Lee~g---F~Vr~------   68 (142)
T COG4747           1 MIVKQISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRM--VVDR-PDEAHSVLEEAG---FTVRE------   68 (142)
T ss_pred             CceeEEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEE--EcCC-hHHHHHHHHHCC---cEEEe------
Confidence            34578999999999999999999999999999999999999999776  4553 334444443321   22222      


Q ss_pred             hhHHHhhheeEEecCccch-HHHHHHHHHcCcEEEEecCCEEEEEEeC--------CHHHHHHHHHHhccCCcE
Q 011491          392 PFAERELILIKIAVNTAAR-RDVLDIAKIFRARAVDVSDHTITLELTG--------DLNKIIALQRLLEPYGIC  456 (484)
Q Consensus       392 ~~V~REL~LIKV~~~~~~r-~eI~~la~ifrakIVDvs~~si~iE~TG--------~~~Kidafi~lL~pyGIl  456 (484)
                            --.+-|..+  .+ ..+-.|++.++..  |++-+++.-=++-        ..+.+|+.++.|+.-||.
T Consensus        69 ------~dVlaVEme--D~PG~l~~I~~vl~d~--diNldYiYAFv~ek~KAlli~r~ed~d~~~~aLed~gi~  132 (142)
T COG4747          69 ------TDVLAVEME--DVPGGLSRIAEVLGDA--DINLDYIYAFVTEKQKALLIVRVEDIDRAIKALEDAGIK  132 (142)
T ss_pred             ------eeEEEEEec--CCCCcHHHHHHHHhhc--CcCceeeeeeeecCceEEEEEEhhHHHHHHHHHHHcCCe
Confidence                  222222221  11 1344455555443  3444444332222        346789999999999975

>PRK03381 PII uridylyl-transferase; Provisional

Probab=96.83  E-value=0.038  Score=63.23  Aligned_cols=37  Identities=19%  Similarity=0.380  Sum_probs=34.8

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeec
Q 011491          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPA  350 (484)
Q Consensus       314 ~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~t  350 (484)
                      ...|.|...|+||+|.+|+++|+..|+||.+..+...
T Consensus       707 ~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~  743 (774)
T PRK03381        707 ATVLEVRAADRPGLLARLARALERAGVDVRWARVATL  743 (774)
T ss_pred             eEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeec
Confidence            3689999999999999999999999999999999887

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=96.82  E-value=0.0048  Score=59.25  Aligned_cols=83  Identities=25%  Similarity=0.266  Sum_probs=68.2

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEeccCCchh
Q 011491          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPF  393 (484)
Q Consensus       314 ~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dlt~~~~  393 (484)
                      ..-||+.++|+||||..+||+.+.+|-||.-...--..+....+|-+-+.|- +..+.|+..|+-.-.|++|+.+...+-
T Consensus         2 ~~~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEgi-~d~e~l~~~lks~d~v~ev~i~~sle~   80 (218)
T COG1707           2 LRGLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEGI-DDFEKLLERLKSFDYVIEVEIHRSLEE   80 (218)
T ss_pred             cceeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeCC-CCHHHHHHHhhccceEEEeeecchHHH
Confidence            3568999999999999999999999999987555444444488888888865 358899999999999999999888766


Q ss_pred             HHHh
Q 011491          394 AERE  397 (484)
Q Consensus       394 V~RE  397 (484)
                      ++--
T Consensus        81 iyGK   84 (218)
T COG1707          81 IYGK   84 (218)
T ss_pred             HhCc
Confidence            6543

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=96.69  E-value=0.0056  Score=62.25  Aligned_cols=71  Identities=14%  Similarity=0.155  Sum_probs=53.0

Q ss_pred             CCCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCC-hHHHHHHHHHHhcc
Q 011491          309 PSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT-DESIGKLVQLLHKL  379 (484)
Q Consensus       309 ~~~~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd-e~~ieql~kQL~KL  379 (484)
                      +..|.++.+++...|+||+.++||++|+.+|.||..++...+...++-.|.+.+... ...+++|...|+++
T Consensus         2 ~~~m~~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~~~~~L~~~L~~l   73 (286)
T PRK13011          2 SRRPDTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGLDEDALRAGFAPI   73 (286)
T ss_pred             CCCCceEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCCCHHHHHHHHHHH
Confidence            356778999999999999999999999999999999999755555666666666421 22355555554444

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=96.69  E-value=0.0048  Score=62.78  Aligned_cols=70  Identities=10%  Similarity=0.123  Sum_probs=52.4

Q ss_pred             ccceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCC-hhHHHHHHHHHhcCcc
Q 011491           75 SKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGT-ERVLRQVVEQLNKLVN  144 (484)
Q Consensus        75 ~~~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gd-e~~veQI~kQL~KLid  144 (484)
                      .+|.++.+++.-.|+||+.++||++|+.+|.||+.++...+...+.  |.+.+..+ ...++++...|+++-+
T Consensus         3 ~~m~~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~~~~~L~~~L~~l~~   75 (286)
T PRK13011          3 RRPDTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGLDEDALRAGFAPIAA   75 (286)
T ss_pred             CCCceEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCCCHHHHHHHHHHHHH
Confidence            3677899999999999999999999999999999999874444455  44444422 2346677766665544

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=96.66  E-value=0.011  Score=66.96  Aligned_cols=88  Identities=18%  Similarity=0.378  Sum_probs=72.8

Q ss_pred             ccccccccccccCCCCCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHH
Q 011491          295 QVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLV  373 (484)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gde~~ieql~  373 (484)
                      .+++..|+.-.    .+.-...|.|...|++|+|+.|+.++++-+.||.++..... +.+..-|.+.+. .+-..+.+|+
T Consensus       612 r~i~v~W~~~~----~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~-~~~~~~~~~~i~v~n~~~L~~i~  686 (701)
T COG0317         612 RVIDVSWGPEY----GQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSD-KDQFATMQFTIEVKNLNHLGRVL  686 (701)
T ss_pred             eEEEEEecCCC----CcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeecccc-CCceEEEEEEEEECcHHHHHHHH
Confidence            68888998332    34457899999999999999999999999999999999886 555555555544 3778999999


Q ss_pred             HHHhcccceEEEec
Q 011491          374 QLLHKLIDLHEVQD  387 (484)
Q Consensus       374 kQL~KLidVi~V~d  387 (484)
                      .||..+-+|..|..
T Consensus       687 ~~l~~~~~V~~v~R  700 (701)
T COG0317         687 ARLKQLPDVISVRR  700 (701)
T ss_pred             HHHhcCCCeEEEEe
Confidence            99999999999864

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=96.66  E-value=0.011  Score=50.75  Aligned_cols=68  Identities=12%  Similarity=0.161  Sum_probs=53.9

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCC-CeEEEEEEEeCC-hHHHHHHHHHHhccc
Q 011491          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKE-GLSCITTVVPGT-DESIGKLVQLLHKLI  380 (484)
Q Consensus       313 ~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~-~iSRiTIVV~gd-e~~ieql~kQL~KLi  380 (484)
                      .+-+|.+.+.|+||.|.++...|+.+|+|+.+|.--|+... .-..+-|=+.|. +..+.+++++|.+-+
T Consensus        13 ~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~~~~~~~~~l~~L~~~~   82 (90)
T cd04931          13 GVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKKSAPALDPIIKSLRNDI   82 (90)
T ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCCCHHHHHHHHHHHHHh
Confidence            35677777899999999999999999999999999887543 344555556675 777888888888743

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=96.66  E-value=0.0064  Score=49.76  Aligned_cols=62  Identities=26%  Similarity=0.241  Sum_probs=46.0

Q ss_pred             EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhc
Q 011491          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK  378 (484)
Q Consensus       315 htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~K  378 (484)
                      ..|++.-.|+||+.++|+++++.+|.||..+........-.-||.+.++  ....+++.+.|++
T Consensus         2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~--~~~~~~l~~~l~~   63 (77)
T cd04893           2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS--WDAIAKLEAALPG   63 (77)
T ss_pred             EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec--cccHHHHHHHHHH
Confidence            5789999999999999999999999999999888754444555555544  3345555544443

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>PRK05007 PII uridylyl-transferase; Provisional

Probab=96.61  E-value=0.066  Score=62.16  Aligned_cols=66  Identities=14%  Similarity=0.255  Sum_probs=48.1

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe--C---ChHHHHHHHHHHhccc
Q 011491          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP--G---TDESIGKLVQLLHKLI  380 (484)
Q Consensus       314 ~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~--g---de~~ieql~kQL~KLi  380 (484)
                      ...|.|.+.|+||+|.+|+.+|.+-|+||.+--+..-.+. ..-+-.|.+  |   +++..+.|.++|..-+
T Consensus       808 ~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~ger-a~DvFyV~~~~g~~l~~~~~~~l~~~L~~~l  878 (884)
T PRK05007        808 RSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGER-VEDLFILATADRRALNEELQQELRQRLTEAL  878 (884)
T ss_pred             eEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCce-EEEEEEEEcCCCCcCCHHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999888764443 334444433  2   2455666766665544

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=96.59  E-value=0.0039  Score=66.06  Aligned_cols=72  Identities=17%  Similarity=0.298  Sum_probs=60.0

Q ss_pred             eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhcCcceeEEEec
Q 011491           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI  151 (484)
Q Consensus        78 ~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~KLidVikV~dl  151 (484)
                      -.|+|.+.=+|+||++++|+.++++.|+||..+.+....+...+.|-+++  ..-+.++++|+++-+|++|..+
T Consensus       337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~D~--~~~~~~~~~i~~i~~v~~v~~~  408 (409)
T PRK11790        337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDVDA--DYAEEALDALKAIPGTIRARLL  408 (409)
T ss_pred             CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEeCC--CCcHHHHHHHHcCCCeEEEEEe
Confidence            45899999999999999999999999999999999776644556666664  4466888999999999998754

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=96.55  E-value=0.015  Score=48.20  Aligned_cols=62  Identities=16%  Similarity=0.156  Sum_probs=46.2

Q ss_pred             EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe--C----ChHHHHHHHHHHh
Q 011491          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP--G----TDESIGKLVQLLH  377 (484)
Q Consensus       315 htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~--g----de~~ieql~kQL~  377 (484)
                      .+|.|...|+||+|.+|+.+|++-|.+|.+-.++.-... ....-.|.+  |    |++..+.|.++|.
T Consensus         2 Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Ger-v~DvFyV~d~~g~kl~d~~~~~~l~~~L~   69 (72)
T cd04895           2 TLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGW-FMDVFHVTDQLGNKLTDDSLIAYIEKSLG   69 (72)
T ss_pred             EEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCe-EEEEEEEECCCCCCCCCHHHHHHHHHHhc
Confidence            478999999999999999999999999999888765543 333333333  2    3456677777663

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=96.54  E-value=0.017  Score=51.64  Aligned_cols=71  Identities=15%  Similarity=0.204  Sum_probs=56.3

Q ss_pred             eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--E-EEEEEeCChhHHHHHHHHHhcCcceeEE
Q 011491           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--L-FTIVVSGTERVLRQVVEQLNKLVNVIKV  148 (484)
Q Consensus        78 ~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~-iTIVV~gde~~veQI~kQL~KLidVikV  148 (484)
                      .+..|.+.+.|+||.|.+|...|+.+|+|+.+|---|+....  + +=|-+.|....+++++++|.+...-++|
T Consensus        40 ~ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg~~~~~~~aL~~L~~~~~~~kv  113 (115)
T cd04930          40 QKATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVHRSDLLQLISSLRQVAEDVRL  113 (115)
T ss_pred             ccEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEeCHHHHHHHHHHHHHhcCeeEe
Confidence            367888888999999999999999999999999988875442  2 4455667666788899999876654443

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=96.53  E-value=0.006  Score=61.96  Aligned_cols=69  Identities=14%  Similarity=0.221  Sum_probs=51.2

Q ss_pred             cceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeC--ChhHHHHHHHHHhcCcc
Q 011491           76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSG--TERVLRQVVEQLNKLVN  144 (484)
Q Consensus        76 ~~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~g--de~~veQI~kQL~KLid  144 (484)
                      .|+++.|++.-.|+||..+.|+++++.+|.||+.++.......+.  |.+.++.  ....++++...|++|-+
T Consensus         3 ~~~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~~~~~~~~L~~~L~~l~~   75 (286)
T PRK06027          3 MMQRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGLIFNLETLRADFAALAE   75 (286)
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            467889999999999999999999999999999999887333344  4444544  12336666666655543

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=96.53  E-value=0.015  Score=48.25  Aligned_cols=61  Identities=13%  Similarity=0.197  Sum_probs=46.1

Q ss_pred             EEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEe-C----ChhHHHHHHHHHh
Q 011491           80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVS-G----TERVLRQVVEQLN  140 (484)
Q Consensus        80 htISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~-g----de~~veQI~kQL~  140 (484)
                      .+|.|...|+||+|.+|+..|++-|++|.+-.++.-.+.-.  |-+.-. |    |++..+.|.++|.
T Consensus         2 Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~   69 (72)
T cd04895           2 TLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLG   69 (72)
T ss_pred             EEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhc
Confidence            47899999999999999999999999999998876555432  333322 2    3456677777663

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=96.52  E-value=0.085  Score=61.35  Aligned_cols=65  Identities=11%  Similarity=0.233  Sum_probs=49.0

Q ss_pred             EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe--C----ChHHHHHHHHHHhccc
Q 011491          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP--G----TDESIGKLVQLLHKLI  380 (484)
Q Consensus       315 htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~--g----de~~ieql~kQL~KLi  380 (484)
                      -.|.|...|+||+|.+|+++|++.|.||.+-.+..+ +.-.--.-.|.+  |    +++..++|.+.|.+.+
T Consensus       815 T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~-g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L  885 (895)
T PRK00275        815 TVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATL-GERVEDVFFITDADNQPLSDPQLCSRLQDAICEQL  885 (895)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEec-CCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHH
Confidence            489999999999999999999999999999988877 443333333333  2    2345677777776654

>PRK03059 PII uridylyl-transferase; Provisional

Probab=96.52  E-value=0.048  Score=63.06  Aligned_cols=66  Identities=18%  Similarity=0.246  Sum_probs=50.8

Q ss_pred             EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC----ChHHHHHHHHHHhcccce
Q 011491          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG----TDESIGKLVQLLHKLIDL  382 (484)
Q Consensus       315 htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~g----de~~ieql~kQL~KLidV  382 (484)
                      ..|.|.+.|+||+|.+|+++|++.|+||.+-.+... +.. .-=++.|.+    +++..++|.+.|.+.++|
T Consensus       787 T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~-~~~-v~DvF~V~~~~~~~~~~~~~l~~~L~~~L~~  856 (856)
T PRK03059        787 YILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTL-GER-VEDTFLIDGSGLSDNRLQIQLETELLDALAV  856 (856)
T ss_pred             EEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeec-CCE-EEEEEEEcCCCCCCHHHHHHHHHHHHHHhcC
Confidence            589999999999999999999999999999888877 333 333333332    456678888888877665

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=96.50  E-value=0.016  Score=47.60  Aligned_cols=47  Identities=21%  Similarity=0.311  Sum_probs=39.0

Q ss_pred             EEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE-EEEEEe
Q 011491           80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL-FTIVVS  126 (484)
Q Consensus        80 htISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~-iTIVV~  126 (484)
                      |.|.|+..|+||++++++|.|++.|+||.+-.+-.+.+.-. =++.|.
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~   49 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVT   49 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEe
Confidence            67899999999999999999999999999998877755433 355543

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=96.29  E-value=0.021  Score=49.01  Aligned_cols=64  Identities=13%  Similarity=0.247  Sum_probs=50.6

Q ss_pred             eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--E-EEEEEeCC-hhHHHHHHHHHhc
Q 011491           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--L-FTIVVSGT-ERVLRQVVEQLNK  141 (484)
Q Consensus        78 ~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~-iTIVV~gd-e~~veQI~kQL~K  141 (484)
                      .+.+|.+.+.|+||.|.++...|+.+|+|+.+|.--|+....  + +=|-+.|. +..+++++++|.+
T Consensus        13 ~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~~~~~~~~~l~~L~~   80 (90)
T cd04931          13 GVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKKSAPALDPIIKSLRN   80 (90)
T ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCCCHHHHHHHHHHHH
Confidence            356788888999999999999999999999999988875442  2 44445564 6677888888876

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=96.28  E-value=0.0082  Score=63.68  Aligned_cols=72  Identities=17%  Similarity=0.275  Sum_probs=59.7

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEecc
Q 011491          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI  388 (484)
Q Consensus       313 ~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dl  388 (484)
                      ..|+|.+.=+|+||++++|+.++++.|+||.++.+....  +..-|+|-+++  ..-+.++++|+++-+|++|.-+
T Consensus       337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~--~~A~~iie~D~--~~~~~~~~~i~~i~~v~~v~~~  408 (409)
T PRK11790        337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDG--EIGYVVIDVDA--DYAEEALDALKAIPGTIRARLL  408 (409)
T ss_pred             CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCC--CEEEEEEEeCC--CCcHHHHHHHHcCCCeEEEEEe
Confidence            458999999999999999999999999999999996655  55556665654  4466899999999999998754

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=96.23  E-value=0.02  Score=47.86  Aligned_cols=63  Identities=11%  Similarity=0.055  Sum_probs=46.3

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeeeee--ecCCCCeEEEEEEEeC----ChHHHHHHHHHHhc
Q 011491          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVG--PAEKEGLSCITTVVPG----TDESIGKLVQLLHK  378 (484)
Q Consensus       316 tLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg--~te~~~iSRiTIVV~g----de~~ieql~kQL~K  378 (484)
                      .|.|...|+||+|.+|+..|.+-|++|.+-.++  .-...-+.-+-+..+|    +++..+.|...|.+
T Consensus         2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~g~kl~d~~~~~~L~~~L~~   70 (75)
T cd04896           2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKKQAALCARLRE   70 (75)
T ss_pred             EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCCCCccCCHHHHHHHHHHHHH
Confidence            588999999999999999999999999998887  4444444444443334    44556677766654

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=96.20  E-value=0.022  Score=64.58  Aligned_cols=72  Identities=21%  Similarity=0.265  Sum_probs=59.5

Q ss_pred             EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEe-CChhHHHHHHHHHhcCcceeEEEec
Q 011491           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVS-GTERVLRQVVEQLNKLVNVIKVEDI  151 (484)
Q Consensus        79 khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~-gde~~veQI~kQL~KLidVikV~dl  151 (484)
                      .-.|.|.+.|++|+|+.|+.+++.-+.||.+++.... +.+.  +++.+. .+-..+++|+++|.++-+|++|...
T Consensus       626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~-~~~~~~~~~~ieV~~~~~L~~i~~~Lr~i~~V~~V~R~  700 (702)
T PRK11092        626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEK-DGRVYSAFIRLTARDRVHLANIMRKIRVMPDVIKVTRN  700 (702)
T ss_pred             EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEc-CCCEEEEEEEEEECCHHHHHHHHHHHhCCCCcceEEEc
Confidence            3489999999999999999999999999999997543 3332  444443 4678999999999999999999864

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=96.18  E-value=0.011  Score=60.07  Aligned_cols=70  Identities=16%  Similarity=0.163  Sum_probs=50.8

Q ss_pred             CceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC--ChHHHHHHHHHHhccc
Q 011491          311 GLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG--TDESIGKLVQLLHKLI  380 (484)
Q Consensus       311 ~~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~g--de~~ieql~kQL~KLi  380 (484)
                      .|+++.+++.-.|+||+.+.|+++++.+|.||..++.......+.-.|.+.+..  ....+++|...|+++-
T Consensus         3 ~~~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~~~~~~~~L~~~L~~l~   74 (286)
T PRK06027          3 MMQRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGLIFNLETLRADFAALA   74 (286)
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            356789999999999999999999999999999999887434455555555554  1223555554444443

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=96.15  E-value=0.01  Score=64.71  Aligned_cols=74  Identities=20%  Similarity=0.384  Sum_probs=60.6

Q ss_pred             eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhcCcceeEEEec
Q 011491           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI  151 (484)
Q Consensus        78 ~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~KLidVikV~dl  151 (484)
                      ..|+|-+.-.|+||++.+|+.+|++.|+||.++.++..+..+.-.+++.-|+..-+.++++|.++.+|.+|..+
T Consensus       451 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D~~v~~~~l~~i~~~~~i~~~~~i  524 (526)
T PRK13581        451 EGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVDDPVPEEVLEELRALPGILSAKAV  524 (526)
T ss_pred             CceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECCCCCCHHHHHHHhcCCCcceEEEE
Confidence            34778777799999999999999999999999999987665553444444556668889999999999998865

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=96.07  E-value=0.022  Score=54.88  Aligned_cols=80  Identities=24%  Similarity=0.368  Sum_probs=62.2

Q ss_pred             EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCC--CcEEEEEEeCChhHHHHHHHHHhcCcceeEEEecCCchh
Q 011491           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD--KALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPH  156 (484)
Q Consensus        79 khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted--~~~iTIVV~gde~~veQI~kQL~KLidVikV~dlt~~~~  156 (484)
                      ..-||+.++|+||||..++|+.+.+|-||.-...-...+  .+.+-+-+.|-+ ..+.++..|.-+-.|++|+.+..-+.
T Consensus         2 ~~~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEgi~-d~e~l~~~lks~d~v~ev~i~~sle~   80 (218)
T COG1707           2 LRGLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEGID-DFEKLLERLKSFDYVIEVEIHRSLEE   80 (218)
T ss_pred             cceeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeCCC-CHHHHHHHhhccceEEEeeecchHHH
Confidence            346899999999999999999999999998655433222  234667777644 57899999999999999998877554


Q ss_pred             hhh
Q 011491          157 VER  159 (484)
Q Consensus       157 V~R  159 (484)
                      ++-
T Consensus        81 iyG   83 (218)
T COG1707          81 IYG   83 (218)
T ss_pred             HhC
Confidence            443

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=96.05  E-value=0.028  Score=44.71  Aligned_cols=60  Identities=13%  Similarity=0.179  Sum_probs=50.2

Q ss_pred             EEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC-ChHHHHHHHHHHhc
Q 011491          317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG-TDESIGKLVQLLHK  378 (484)
Q Consensus       317 LsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~g-de~~ieql~kQL~K  378 (484)
                      +++.+.++||-|.++..+++. |.||-.+.-.... .+..++++++.. +.+.++++.++|++
T Consensus         1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~-~~~~~v~v~ie~~~~~~~~~i~~~L~~   61 (68)
T cd04885           1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRNQG-GDEARVLVGIQVPDREDLAELKERLEA   61 (68)
T ss_pred             CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCC-CCceEEEEEEEeCCHHHHHHHHHHHHH
Confidence            467889999999999999999 9999999887654 566778877763 45789999999875

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK07334 threonine dehydratase; Provisional

Probab=96.03  E-value=0.029  Score=59.02  Aligned_cols=66  Identities=18%  Similarity=0.221  Sum_probs=56.4

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecC---CCCeEEEEEEEe-CChHHHHHHHHHHhcc
Q 011491          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE---KEGLSCITTVVP-GTDESIGKLVQLLHKL  379 (484)
Q Consensus       314 ~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te---~~~iSRiTIVV~-gde~~ieql~kQL~KL  379 (484)
                      +..|.|.+.|+||+|.+|+.+++.-+.||.+++.....   ..+..+|.+++. .+.+.+++++++|++.
T Consensus       326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d~~~L~~vi~~Lr~~  395 (403)
T PRK07334        326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRDAAHLQEVIAALRAA  395 (403)
T ss_pred             EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence            57999999999999999999999999999999986431   356777777776 4888999999999985

>PRK07431 aspartate kinase; Provisional

Probab=96.02  E-value=0.3  Score=53.91  Aligned_cols=51  Identities=25%  Similarity=0.328  Sum_probs=40.3

Q ss_pred             eCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhccc
Q 011491          322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLI  380 (484)
Q Consensus       322 eN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLi  380 (484)
                      .++||++.|+...+++.|+|+..++.      .--+++++|+  ++..++.++.|++-.
T Consensus       530 ~~~~gv~~ri~~aL~~~~I~v~~i~~------S~~~Is~vV~--~~~~~~av~~Lh~~f  580 (587)
T PRK07431        530 PGTPGVAARMFRALADAGINIEMIAT------SEIRTSCVVA--EDDGVKALQAVHQAF  580 (587)
T ss_pred             cCCcCHHHHHHHHHHHCCCcEEEeec------cceEEEEEEe--HHHHHHHHHHHHHHh
Confidence            58899999999999999999988872      1235667776  456788888888765

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=96.00  E-value=0.042  Score=45.34  Aligned_cols=62  Identities=18%  Similarity=0.212  Sum_probs=50.3

Q ss_pred             EEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEeCChHHHHHHHHHHhc
Q 011491          317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPGTDESIGKLVQLLHK  378 (484)
Q Consensus       317 LsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~-~~iSRiTIVV~gde~~ieql~kQL~K  378 (484)
                      |.+.+.|+||.|.++...|..+|+|+..|.--|... +.-..+-|-+.|+...+.++++.|.+
T Consensus         3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~~~~i~~~l~~l~~   65 (74)
T cd04929           3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECDQRRLDELVQLLKR   65 (74)
T ss_pred             EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCHHHHHHHHHHHHH
Confidence            455568999999999999999999999999988654 34455566677888788888888876

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=95.96  E-value=0.038  Score=53.38  Aligned_cols=115  Identities=16%  Similarity=0.176  Sum_probs=79.3

Q ss_pred             c-eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhccc---ceE-EEe
Q 011491          312 L-RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLI---DLH-EVQ  386 (484)
Q Consensus       312 ~-~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLi---dVi-~V~  386 (484)
                      | .+..|+++-.||||+.++|+.+++..|.||..........  .--|.+.+.+....+.++...|.++.   ++. .++
T Consensus         5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg--~Fa~i~lvs~~~~~~~~le~~L~~l~~~~~L~i~v~   82 (190)
T PRK11589          5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGE--EFTFIMLLSGSWNAITLIESTLPLKGAELDLLIVMK   82 (190)
T ss_pred             cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCC--ceEEEEEEeCChhHHHHHHHHHHhhhhhcCeEEEEE
Confidence            5 4568999999999999999999999999999888876644  44567777888788888888877766   332 233


Q ss_pred             ccCCchhHHHhhh-eeEEecCccchH----HHHHHHHHcCcEEEEecCC
Q 011491          387 DITHLPFAERELI-LIKIAVNTAARR----DVLDIAKIFRARAVDVSDH  430 (484)
Q Consensus       387 dlt~~~~V~REL~-LIKV~~~~~~r~----eI~~la~ifrakIVDvs~~  430 (484)
                      ......  .++.. .+.|.+...+|+    +|-+....++..|.|.+.+
T Consensus        83 ~~~~~~--~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~  129 (190)
T PRK11589         83 RTTARP--RPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSR  129 (190)
T ss_pred             eccccc--cccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEe
Confidence            332211  22332 366666666664    4455555667777776544

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=95.96  E-value=0.031  Score=57.97  Aligned_cols=67  Identities=15%  Similarity=0.312  Sum_probs=55.7

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeee---ecCCCCeEEEEEEEeC-ChHHHHHHHHHHhcc
Q 011491          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVG---PAEKEGLSCITTVVPG-TDESIGKLVQLLHKL  379 (484)
Q Consensus       313 ~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg---~te~~~iSRiTIVV~g-de~~ieql~kQL~KL  379 (484)
                      +.++|++.+.|+||.|.+++.+++..|.||.++...   +....+...+++.++. +.+..++|++-|++.
T Consensus       304 r~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~~~~~~~i~~~L~~~  374 (380)
T TIGR01127       304 RKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRGKEHLDEILKILRDM  374 (380)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence            467999999999999999999999999999999776   3334567788888874 567788999888764

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=95.94  E-value=0.03  Score=46.77  Aligned_cols=61  Identities=13%  Similarity=0.187  Sum_probs=44.9

Q ss_pred             EEEEEEcCchhHHHHHHHHHhccCceeeeEeee--ecCCCc--EEEEEEeC----ChhHHHHHHHHHhc
Q 011491           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVG--LNVDKA--LFTIVVSG----TERVLRQVVEQLNK  141 (484)
Q Consensus        81 tISilVeN~pGVL~RIagLFsRRGyNIeSLtVg--~Ted~~--~iTIVV~g----de~~veQI~kQL~K  141 (484)
                      +|.|...|+||+|.+|+..|++-|++|.+-.++  .-.+..  .|-+..+|    |+...+.|...|.+
T Consensus         2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~g~kl~d~~~~~~L~~~L~~   70 (75)
T cd04896           2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKKQAALCARLRE   70 (75)
T ss_pred             EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCCCCccCCHHHHHHHHHHHHH
Confidence            688999999999999999999999999998887  333322  25553334    34556666666643

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=95.92  E-value=0.021  Score=55.43  Aligned_cols=57  Identities=14%  Similarity=0.177  Sum_probs=48.3

Q ss_pred             EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC--ChHHHHH
Q 011491          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG--TDESIGK  371 (484)
Q Consensus       315 htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~g--de~~ieq  371 (484)
                      |+|-+.=.|+||++.+|+.++.+.|+||.++.++..+..+-.=|.|.+++  +++.+++
T Consensus       149 ~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD~~v~~~vl~~  207 (208)
T TIGR00719       149 PAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEIDKNIDDHIKDA  207 (208)
T ss_pred             cEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeCCCCCHHHHhh
Confidence            67777779999999999999999999999999999888887778887874  4555554

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=95.86  E-value=0.036  Score=62.67  Aligned_cols=70  Identities=19%  Similarity=0.235  Sum_probs=58.5

Q ss_pred             EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEe-CChhHHHHHHHHHhcCcceeEEE
Q 011491           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVS-GTERVLRQVVEQLNKLVNVIKVE  149 (484)
Q Consensus        79 khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~-gde~~veQI~kQL~KLidVikV~  149 (484)
                      .-.|.|.+.|++|+|+.|+.+++.-+.||.++++.... .+.  +.+.+. .+-..+..|+.+|.++-+|++|.
T Consensus       610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~-~~~~~~~~~ieV~~~~~L~~ii~~L~~i~~V~~v~  682 (683)
T TIGR00691       610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYG-KREAILNITVEIKNYKHLLKIMLKIKTKNDVIVVK  682 (683)
T ss_pred             EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcC-CCEEEEEEEEEECCHHHHHHHHHHHhCCCCceEEe
Confidence            44899999999999999999999999999999986543 333  444443 46789999999999999999885

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=95.85  E-value=0.036  Score=63.34  Aligned_cols=72  Identities=22%  Similarity=0.383  Sum_probs=59.5

Q ss_pred             EEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEe-CChhHHHHHHHHHhcCcceeEEEec
Q 011491           80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVS-GTERVLRQVVEQLNKLVNVIKVEDI  151 (484)
Q Consensus        80 htISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~-gde~~veQI~kQL~KLidVikV~dl  151 (484)
                      -.|.|.+.|++|+|+.|+.+++.-+.||.++++......+.  +++++. .+-..+.+|+.+|.++-+|++|...
T Consensus       667 v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~~~~L~~l~~~L~~i~~V~~v~R~  741 (743)
T PRK10872        667 LVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRL  741 (743)
T ss_pred             EEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECCHHHHHHHHHHHhcCCCcCeEEec
Confidence            48899999999999999999999999999999854331332  555444 4678999999999999999999864

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=95.82  E-value=0.05  Score=44.92  Aligned_cols=61  Identities=15%  Similarity=0.278  Sum_probs=48.1

Q ss_pred             EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--E-EEEEEeCChhHHHHHHHHHhc
Q 011491           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--L-FTIVVSGTERVLRQVVEQLNK  141 (484)
Q Consensus        81 tISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~-iTIVV~gde~~veQI~kQL~K  141 (484)
                      .+.+.+.|+||.|.++...|+.+|+|+..|.--|.....  + +=|-+.|+...++++++.|.+
T Consensus         2 sl~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~~~~i~~~l~~l~~   65 (74)
T cd04929           2 SVIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECDQRRLDELVQLLKR   65 (74)
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCHHHHHHHHHHHHH
Confidence            355666899999999999999999999999988865443  2 455667777778888887765

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=95.76  E-value=0.04  Score=46.02  Aligned_cols=62  Identities=18%  Similarity=0.252  Sum_probs=48.1

Q ss_pred             EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEE-EeC----ChhHHHHHHHHHhcC
Q 011491           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIV-VSG----TERVLRQVVEQLNKL  142 (484)
Q Consensus        81 tISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIV-V~g----de~~veQI~kQL~KL  142 (484)
                      ++.|...|+||+|.+|+..|++-|++|.+-.++...+...  +-|. .+|    |+...+.|.+.|.+.
T Consensus         3 vveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~a   71 (75)
T cd04897           3 VVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAA   71 (75)
T ss_pred             EEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999987655433  4443 223    566677777777554

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11899 prephenate dehydratase; Provisional

Probab=95.69  E-value=0.073  Score=54.24  Aligned_cols=69  Identities=17%  Similarity=0.179  Sum_probs=56.2

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecC-CCCeEEEEEEEeC--ChHHHHHHHHHHhcccce
Q 011491          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE-KEGLSCITTVVPG--TDESIGKLVQLLHKLIDL  382 (484)
Q Consensus       314 ~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te-~~~iSRiTIVV~g--de~~ieql~kQL~KLidV  382 (484)
                      +-.|.+.+.|+||.|.++.+.|++||+|+.+|.--|+. .++-..+-|-+.|  ++..+.+.+++|++.-.-
T Consensus       194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~~d~~v~~aL~~l~~~~~~  265 (279)
T PRK11899        194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGHPEDRNVALALEELRFFSEE  265 (279)
T ss_pred             eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhcCc
Confidence            56677777999999999999999999999999999985 4566677777777  456788888888876543

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=95.61  E-value=0.028  Score=54.53  Aligned_cols=56  Identities=23%  Similarity=0.238  Sum_probs=45.4

Q ss_pred             EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEeC--ChhHHHH
Q 011491           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSG--TERVLRQ  134 (484)
Q Consensus        79 khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~iTIVV~g--de~~veQ  134 (484)
                      .|.|-+.=.|+||++.+|+.++.+.|+||.++.++..+..+  +|.|.+++  +++.+++
T Consensus       148 g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD~~v~~~vl~~  207 (208)
T TIGR00719       148 HPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEIDKNIDDHIKDA  207 (208)
T ss_pred             ccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeCCCCCHHHHhh
Confidence            47888888999999999999999999999999999876555  47777764  3444443

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=95.59  E-value=0.017  Score=55.31  Aligned_cols=71  Identities=20%  Similarity=0.312  Sum_probs=52.0

Q ss_pred             eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc----E----EEEEEeCChhHHHHHHHHHhcCcceeEEE
Q 011491           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA----L----FTIVVSGTERVLRQVVEQLNKLVNVIKVE  149 (484)
Q Consensus        78 ~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~----~----iTIVV~gde~~veQI~kQL~KLidVikV~  149 (484)
                      ..|.+.+-+.||||.+++++.+|.++|+||++|..-..-.++    .    +|+-+.. ...+.++..+++.|-|=+.|+
T Consensus        91 ~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa-~~~i~~l~~~f~al~~~L~v~  169 (176)
T COG2716          91 APVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPA-NLSISALRDAFEALCDELNVD  169 (176)
T ss_pred             ceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCC-cCcHHHHHHHHHHHHHhhcce
Confidence            457999999999999999999999999999999986543332    2    3333332 335777778877765554443

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=95.55  E-value=0.028  Score=61.45  Aligned_cols=73  Identities=22%  Similarity=0.366  Sum_probs=60.2

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEecc
Q 011491          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI  388 (484)
Q Consensus       314 ~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dl  388 (484)
                      .|+|-+.-.|+||++.+|+.+|++.|+||.++.++..+..+..=|.|-++  +..-+.++++|.++.+|.+|..+
T Consensus       452 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D--~~v~~~~l~~i~~~~~i~~~~~i  524 (526)
T PRK13581        452 GHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVD--DPVPEEVLEELRALPGILSAKAV  524 (526)
T ss_pred             ceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECC--CCCCHHHHHHHhcCCCcceEEEE
Confidence            37787777999999999999999999999999999987766554544444  44568888999999999998765

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=95.53  E-value=0.061  Score=44.94  Aligned_cols=63  Identities=11%  Similarity=0.188  Sum_probs=47.4

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe--C----ChHHHHHHHHHHhcc
Q 011491          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP--G----TDESIGKLVQLLHKL  379 (484)
Q Consensus       316 tLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~--g----de~~ieql~kQL~KL  379 (484)
                      .+.|...|+||+|.+|+..|++-||+|.+-.++...+.- .-.-.+.+  |    ++...+.|.+.|...
T Consensus         3 vveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera-~D~FyV~d~~g~kl~~~~~~~~l~~~L~~a   71 (75)
T cd04897           3 VVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDA-HQEYYIRHKDGRTLSTEGERQRVIKCLEAA   71 (75)
T ss_pred             EEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceE-EEEEEEEcCCCCccCCHHHHHHHHHHHHHH
Confidence            688999999999999999999999999998888755433 33333332  3    555677777777654

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK04374 PII uridylyl-transferase; Provisional

Probab=95.50  E-value=0.36  Score=56.25  Aligned_cols=65  Identities=14%  Similarity=0.201  Sum_probs=46.6

Q ss_pred             EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe--CC---hHHHHHHHHHHhccc
Q 011491          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP--GT---DESIGKLVQLLHKLI  380 (484)
Q Consensus       315 htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~--gd---e~~ieql~kQL~KLi  380 (484)
                      .+|.|.+.|+||+|.+|+++|+..|.||.+-.+... +...--.-.|.+  |.   ++..++|.+.|.+.+
T Consensus       797 t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~-g~~a~D~F~V~d~~g~~~~~~~~~~l~~~L~~~l  866 (869)
T PRK04374        797 TRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATF-GERAEDQFQITDEHDRPLSESARQALRDALCACL  866 (869)
T ss_pred             EEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEec-CCEEEEEEEEECCCCCcCChHHHHHHHHHHHHHh
Confidence            589999999999999999999999999999988887 333322223323  21   233366666665544

>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]

Probab=95.43  E-value=0.042  Score=52.25  Aligned_cols=70  Identities=21%  Similarity=0.351  Sum_probs=59.3

Q ss_pred             EEEEEEE--eCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEe
Q 011491          315 HTLSMLV--NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQ  386 (484)
Q Consensus       315 htLsilV--eN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~  386 (484)
                      +.|.++.  .+.||+|..|+++.+.||++|-.+-....|-.+-+++||++.+-  .-..++.||.|+--|.+|.
T Consensus        94 gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~dpe~~~e~~l~IVte~~--iP~~li~el~~i~gVk~i~  165 (167)
T COG2150          94 GVIEIYPEDARYPGILAGVASLIAKRGISIRQIISEDPELQEEPKLTIVTERP--IPGDLIDELKKIDGVKKIS  165 (167)
T ss_pred             eEEEEEeccCCCccHHHHHHHHHHHcCceEEEEecCCcccCCCceEEEEEecc--CCHHHHHHHhcccCceeEE
Confidence            5666766  56899999999999999999999888877777889999999743  4567899999999998875

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=95.30  E-value=0.017  Score=55.44  Aligned_cols=72  Identities=22%  Similarity=0.249  Sum_probs=49.7

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCC----eEEEEEEEeC-ChHHHHHHHHHHhcccceEEE
Q 011491          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEG----LSCITTVVPG-TDESIGKLVQLLHKLIDLHEV  385 (484)
Q Consensus       314 ~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~----iSRiTIVV~g-de~~ieql~kQL~KLidVi~V  385 (484)
                      .|.+.+-++||||+++++|.+|.++|+||++|..-..-.++    +-.+.|.+.- ---.+.+|..+++.|-|=+.|
T Consensus        92 ~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~~~i~~l~~~f~al~~~L~v  168 (176)
T COG2716          92 PVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPANLSISALRDAFEALCDELNV  168 (176)
T ss_pred             eEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCCcCcHHHHHHHHHHHHHhhcc
Confidence            47889999999999999999999999999999886543332    2233333321 123567777777666443333

>PRK07334 threonine dehydratase; Provisional

Probab=95.29  E-value=0.072  Score=56.13  Aligned_cols=64  Identities=17%  Similarity=0.264  Sum_probs=51.8

Q ss_pred             EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecC---CCc--EEEEEEe-CChhHHHHHHHHHhcC
Q 011491           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV---DKA--LFTIVVS-GTERVLRQVVEQLNKL  142 (484)
Q Consensus        79 khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Te---d~~--~iTIVV~-gde~~veQI~kQL~KL  142 (484)
                      ...|.|.+.|+||+|++|+.+++.-+.||.+++.....   ..+  .+.+++. .|.+.+++++++|++.
T Consensus       326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d~~~L~~vi~~Lr~~  395 (403)
T PRK07334        326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRDAAHLQEVIAALRAA  395 (403)
T ss_pred             EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence            47999999999999999999999999999999986431   223  2555544 4778899999999885

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=95.27  E-value=0.23  Score=50.85  Aligned_cols=40  Identities=18%  Similarity=0.317  Sum_probs=36.9

Q ss_pred             cccceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeee
Q 011491           74 ASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVG  113 (484)
Q Consensus        74 ~~~~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg  113 (484)
                      +++|.+++|++.-.|+||+.++||++++..|.||..++.-
T Consensus         4 ~~~m~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~   43 (289)
T PRK13010          4 KPRSPSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQF   43 (289)
T ss_pred             cccccCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccc
Confidence            3467788999999999999999999999999999999975

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=95.27  E-value=0.029  Score=61.31  Aligned_cols=73  Identities=18%  Similarity=0.330  Sum_probs=58.2

Q ss_pred             EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhcCcceeEEEec
Q 011491           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI  151 (484)
Q Consensus        79 khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~KLidVikV~dl  151 (484)
                      -|+|-+.-.|+||++.+|+.+++..++||.++.++..+..+.-.+++.-|+..-+.++++|.++.+|.+|..+
T Consensus       451 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D~~v~~~~l~~i~~~~~i~~v~~i  523 (525)
T TIGR01327       451 GIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLDQPVPDEVLEEIKAIPDILSVFVV  523 (525)
T ss_pred             ccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcCCCCCHHHHHHHhcCCCccEEEEE
Confidence            4677777789999999999999999999999999987666553333334455667788889999999888765

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK06382 threonine dehydratase; Provisional

Probab=95.24  E-value=0.065  Score=56.54  Aligned_cols=65  Identities=18%  Similarity=0.327  Sum_probs=53.6

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeee----ecCCCCeEEEEEEEeCC-hHHHHHHHHHHhcc
Q 011491          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVG----PAEKEGLSCITTVVPGT-DESIGKLVQLLHKL  379 (484)
Q Consensus       314 ~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg----~te~~~iSRiTIVV~gd-e~~ieql~kQL~KL  379 (484)
                      ...|.+.+.|+||.|.+++.+|...|.||.++...    +. ..+...+++.++.. .+..++|.+.|++.
T Consensus       330 ~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~-~~~~~~v~i~vet~~~~~~~~v~~~L~~~  399 (406)
T PRK06382        330 LVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKET-PPGFQSVTFTVNVRGQDHLDRILNALREM  399 (406)
T ss_pred             EEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccC-CCCcEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence            57899999999999999999999999999999875    33 35667888888854 35567899888764

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=95.20  E-value=0.049  Score=55.38  Aligned_cols=62  Identities=15%  Similarity=0.160  Sum_probs=46.9

Q ss_pred             EEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCCh--hHHHHHHHHHhc
Q 011491           80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTE--RVLRQVVEQLNK  141 (484)
Q Consensus        80 htISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gde--~~veQI~kQL~K  141 (484)
                      ++|++.-.|+||..++||++++.+|.||..++.-.....+.  |.+.++.++  ...+++...|+.
T Consensus         1 ~~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~~~~~~l~~~l~~   66 (280)
T TIGR00655         1 GILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFRLEESSLLAAFKS   66 (280)
T ss_pred             CEEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Confidence            37899999999999999999999999999999876655566  555565433  235555555544

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>PRK11899 prephenate dehydratase; Provisional

Probab=95.13  E-value=0.11  Score=52.84  Aligned_cols=69  Identities=19%  Similarity=0.228  Sum_probs=53.9

Q ss_pred             eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-c-E-EEEEEeC--ChhHHHHHHHHHhcCccee
Q 011491           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-A-L-FTIVVSG--TERVLRQVVEQLNKLVNVI  146 (484)
Q Consensus        78 ~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~-~-iTIVV~g--de~~veQI~kQL~KLidVi  146 (484)
                      .+-.|.+.+.|+||.|.++.+.|++||+|+.+|.--|+... + + +-|-+.|  ++..+++.+++|.+.-.-+
T Consensus       193 ~ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~~d~~v~~aL~~l~~~~~~~  266 (279)
T PRK11899        193 IVTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGHPEDRNVALALEELRFFSEEV  266 (279)
T ss_pred             ceEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhcCcE
Confidence            36778888899999999999999999999999999887544 3 2 4455555  4667888888887765433

>PRK06635 aspartate kinase; Reviewed

Probab=95.12  E-value=0.13  Score=53.79  Aligned_cols=120  Identities=20%  Similarity=0.241  Sum_probs=82.6

Q ss_pred             EcCchhHHHHHHHHHhccCceeeeEeeeecCC-CcEEEEEEeCChhHHHHHHHHHhcCc---ceeEEEecCCchhhhhhh
Q 011491           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVD-KALFTIVVSGTERVLRQVVEQLNKLV---NVIKVEDISNEPHVEREL  161 (484)
Q Consensus        86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted-~~~iTIVV~gde~~veQI~kQL~KLi---dVikV~dlt~~~~V~REL  161 (484)
                      ..|+||+|.||...|.+.|+||+.++.+.+++ +.-++++++.  ...++..+.|+++.   .+..+.       +.+.+
T Consensus       270 ~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~--~~~~~a~~~L~~~~~~~~~~~i~-------~~~~i  340 (404)
T PRK06635        270 VPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPR--DDLEKALELLEEVKDEIGAESVT-------YDDDI  340 (404)
T ss_pred             CCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcH--HHHHHHHHHHHHHHHHcCcceEE-------EcCCe
Confidence            67899999999999999999999998776554 3447887763  33555666666632   222222       45678


Q ss_pred             eeEEEeCC-----CCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhc
Q 011491          162 MLIKLNGD-----TSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLS  214 (484)
Q Consensus       162 aLiKV~~~-----~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~  214 (484)
                      +++.|...     +..-.++++....++.+|.-++....-+-++=+.+..+..++.|.
T Consensus       341 a~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~ss~~~is~vv~~~d~~~a~~~Lh  398 (404)
T PRK06635        341 AKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMISTSEIKISVLIDEKYLELAVRALH  398 (404)
T ss_pred             EEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEEecCCeEEEEEcHHHHHHHHHHHH
Confidence            88888532     233457888888889899888654455555555566666677664

>PRK08198 threonine dehydratase; Provisional

Probab=95.09  E-value=0.11  Score=54.51  Aligned_cols=69  Identities=17%  Similarity=0.229  Sum_probs=57.4

Q ss_pred             CceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecC---CCCeEEEEEEEeC-ChHHHHHHHHHHhcc
Q 011491          311 GLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE---KEGLSCITTVVPG-TDESIGKLVQLLHKL  379 (484)
Q Consensus       311 ~~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te---~~~iSRiTIVV~g-de~~ieql~kQL~KL  379 (484)
                      .-+..+|++.+.|+||.|.++..+++..|.||.+++..+..   ..+...++++++. +.+.+++|++.|++.
T Consensus       324 ~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~~~~~~~~~l~~~L~~~  396 (404)
T PRK08198        324 AGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLETRGPEHIEEILDALRDA  396 (404)
T ss_pred             cCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence            33467999999999999999999999999999999987632   2577888888884 556788999998764

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=95.01  E-value=0.1  Score=54.27  Aligned_cols=65  Identities=14%  Similarity=0.268  Sum_probs=50.9

Q ss_pred             eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeee---ecCCCc--EEEEEEeC-ChhHHHHHHHHHhcC
Q 011491           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVG---LNVDKA--LFTIVVSG-TERVLRQVVEQLNKL  142 (484)
Q Consensus        78 ~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg---~Ted~~--~iTIVV~g-de~~veQI~kQL~KL  142 (484)
                      +.++|++.+.|+||.|.+++.++++.|.||.++...   .....+  .+++.++. +.+.+++|++.|++.
T Consensus       304 r~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~~~~~~~i~~~L~~~  374 (380)
T TIGR01127       304 RKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRGKEHLDEILKILRDM  374 (380)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence            456999999999999999999999999999999765   221223  37777764 456778888888664

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein

Probab=94.97  E-value=0.088  Score=43.28  Aligned_cols=56  Identities=13%  Similarity=0.233  Sum_probs=45.8

Q ss_pred             EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh-----HHHHHHHHHHhcccce
Q 011491          321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD-----ESIGKLVQLLHKLIDL  382 (484)
Q Consensus       321 VeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde-----~~ieql~kQL~KLidV  382 (484)
                      ..+.||++.+|.+.|++.|.|++-+..+.      .+++++++.++     +.+++|++.|+++-+|
T Consensus        11 ~~~~~g~~~~IF~~La~~~I~vDmI~~s~------~~isftv~~~~~~~~~~~~~~l~~el~~~~~v   71 (75)
T cd04935          11 MWQQVGFLADVFAPFKKHGVSVDLVSTSE------TNVTVSLDPDPNGLDPDVLDALLDDLNQICRV   71 (75)
T ss_pred             CCCccCHHHHHHHHHHHcCCcEEEEEeCC------CEEEEEEeCcccccchHHHHHHHHHHHhceEE
Confidence            46789999999999999999999996421      67999998654     3789999999995444

This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=94.70  E-value=0.15  Score=57.99  Aligned_cols=72  Identities=26%  Similarity=0.356  Sum_probs=61.5

Q ss_pred             ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--E--EEEEEeCChhHHHHHHHHHhcCcceeEEEe
Q 011491           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--L--FTIVVSGTERVLRQVVEQLNKLVNVIKVED  150 (484)
Q Consensus        77 ~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~--iTIVV~gde~~veQI~kQL~KLidVikV~d  150 (484)
                      .-...|.|...|++|+|+.|+.++++-+.||.+++.... +.+  .  |+|.|+ +-..+.+|+.||..+-+|+.|..
T Consensus       625 ~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~-~~~~~~~~~~i~v~-n~~~L~~i~~~l~~~~~V~~v~R  700 (701)
T COG0317         625 VYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSD-KDQFATMQFTIEVK-NLNHLGRVLARLKQLPDVISVRR  700 (701)
T ss_pred             ceEEEEEEEEccccchHHHHHHHHHhCCCceEEeecccc-CCceEEEEEEEEEC-cHHHHHHHHHHHhcCCCeEEEEe
Confidence            456789999999999999999999999999999998876 333  2  555554 67899999999999999999874

>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins

Probab=94.70  E-value=0.079  Score=40.77  Aligned_cols=55  Identities=22%  Similarity=0.383  Sum_probs=39.3

Q ss_pred             EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhc
Q 011491          321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK  378 (484)
Q Consensus       321 VeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~K  378 (484)
                      +.|+||++.++...+++.|.||+.+..+..+.. -.+++++++.  +..+++.+.|++
T Consensus         9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~~~~~~~-~~~is~~v~~--~d~~~~~~~l~~   63 (75)
T cd04913           9 VPDKPGVAAKIFGALAEANINVDMIVQNVSRDG-TTDISFTVPK--SDLKKALAVLEK   63 (75)
T ss_pred             CCCCCcHHHHHHHHHHHcCCeEEEEEeCCCCCC-cEEEEEEecH--HHHHHHHHHHHH
Confidence            478999999999999999999998876654332 2467777763  334444444444

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee

>PRK06382 threonine dehydratase; Provisional

Probab=94.67  E-value=0.12  Score=54.60  Aligned_cols=65  Identities=23%  Similarity=0.258  Sum_probs=50.7

Q ss_pred             eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeee----ecCCC-cEEEEEEeCC-hhHHHHHHHHHhcC
Q 011491           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVG----LNVDK-ALFTIVVSGT-ERVLRQVVEQLNKL  142 (484)
Q Consensus        78 ~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg----~Ted~-~~iTIVV~gd-e~~veQI~kQL~KL  142 (484)
                      ++..|.+.+.|+||.|.+++.+|...|.||.++...    +.++. ..+++.++.. .+..++|.+.|++.
T Consensus       329 ~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~~~~~~~v~~~L~~~  399 (406)
T PRK06382        329 QLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRGQDHLDRILNALREM  399 (406)
T ss_pred             CEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence            467999999999999999999999999999999875    33222 2477777753 34566888888653

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=94.66  E-value=0.16  Score=40.41  Aligned_cols=59  Identities=14%  Similarity=0.175  Sum_probs=45.8

Q ss_pred             EEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCC-CcEEEEEEeC-ChhHHHHHHHHHhc
Q 011491           82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD-KALFTIVVSG-TERVLRQVVEQLNK  141 (484)
Q Consensus        82 ISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted-~~~iTIVV~g-de~~veQI~kQL~K  141 (484)
                      +++.+.++||-|.++..+++. |.||-.+.-..... ...+.+++.. +.+.++++.++|.+
T Consensus         1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~~~~~~~i~~~L~~   61 (68)
T cd04885           1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPDREDLAELKERLEA   61 (68)
T ss_pred             CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCCHHHHHHHHHHHHH
Confidence            468889999999999999999 99999998765442 2345555552 45788899988865

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=94.49  E-value=0.19  Score=41.79  Aligned_cols=76  Identities=21%  Similarity=0.225  Sum_probs=57.1

Q ss_pred             EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC-C-hHHHHHHHHHHhcccceEEEeccCCch
Q 011491          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG-T-DESIGKLVQLLHKLIDLHEVQDITHLP  392 (484)
Q Consensus       315 htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~g-d-e~~ieql~kQL~KLidVi~V~dlt~~~  392 (484)
                      .++.+.+.|+||-|.+++.+++  |-||..+.-..... +-.++.+++.. + .+.++++.+.|++.=  .++.+.++.+
T Consensus         2 ~vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~-~~~~v~i~ie~~~~~~~~~~i~~~L~~~G--~~~~~~~~~~   76 (85)
T cd04906           2 ALLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADE-KDAHIFVGVSVANGAEELAELLEDLKSAG--YEVVDLSDDE   76 (85)
T ss_pred             eEEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCC-CeeEEEEEEEeCCcHHHHHHHHHHHHHCC--CCeEECCCCH
Confidence            4688999999999999999999  77888766665443 56778887774 3 478889999887743  3566677766


Q ss_pred             hHH
Q 011491          393 FAE  395 (484)
Q Consensus       393 ~V~  395 (484)
                      ...
T Consensus        77 ~~~   79 (85)
T cd04906          77 LAK   79 (85)
T ss_pred             HHH
Confidence            543

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=94.40  E-value=0.099  Score=53.48  Aligned_cols=72  Identities=15%  Similarity=0.212  Sum_probs=49.7

Q ss_pred             CCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeee--ecCCCCeEEEEEEEe--C--ChHHHHHHHHHHhcccc
Q 011491          310 SGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVG--PAEKEGLSCITTVVP--G--TDESIGKLVQLLHKLID  381 (484)
Q Consensus       310 ~~~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg--~te~~~iSRiTIVV~--g--de~~ieql~kQL~KLid  381 (484)
                      +.|.+++|++.-.|+||+.++||++++..|.||..++.-  .....-..|+.++..  +  +...+++-.+++-+-.+
T Consensus         5 ~~m~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~~~~~~~l~~~l~~l~~~l~   82 (289)
T PRK13010          5 PRSPSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEAASVDTFRQEFQPVAEKFD   82 (289)
T ss_pred             ccccCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHhC
Confidence            457788999999999999999999999999999999885  222233445555533  2  23344444444444444

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=94.38  E-value=0.075  Score=58.13  Aligned_cols=72  Identities=22%  Similarity=0.338  Sum_probs=59.1

Q ss_pred             EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEecc
Q 011491          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI  388 (484)
Q Consensus       315 htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dl  388 (484)
                      |+|-+.-.|+||++.+|+.++...++||.++.++..+..+..=|.|-++  +..-+.++++|.++.+|.+|..+
T Consensus       452 ~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D--~~v~~~~l~~i~~~~~i~~v~~i  523 (525)
T TIGR01327       452 IMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLD--QPVPDEVLEEIKAIPDILSVFVV  523 (525)
T ss_pred             cEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcC--CCCCHHHHHHHhcCCCccEEEEE
Confidence            6777777899999999999999999999999999987776655555555  44557788888888898888765

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK06545 prephenate dehydrogenase; Validated

Probab=94.38  E-value=0.11  Score=53.80  Aligned_cols=65  Identities=25%  Similarity=0.355  Sum_probs=49.5

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC--CCeEEEEEEEeCChHHHHHHHHHHhcccc
Q 011491          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK--EGLSCITTVVPGTDESIGKLVQLLHKLID  381 (484)
Q Consensus       314 ~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~--~~iSRiTIVV~gde~~ieql~kQL~KLid  381 (484)
                      -|.+.+.+.|+||.|.+|+.++.+.|+||+.|.+-++-.  .|+-|+++.   +++..++..+.|++-..
T Consensus       290 ~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~  356 (359)
T PRK06545        290 FYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQISFK---NEEDRERAKALLEEFWT  356 (359)
T ss_pred             ceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEEeC---CHHHHHHHHHHHHhcCc
Confidence            489999999999999999999999999999999976543  355555544   33455666666655543

>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=94.33  E-value=0.97  Score=43.12  Aligned_cols=138  Identities=24%  Similarity=0.275  Sum_probs=95.0

Q ss_pred             ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEeCC-hHHHHHHHHHHhcc-cceEEEecc
Q 011491          312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPGT-DESIGKLVQLLHKL-IDLHEVQDI  388 (484)
Q Consensus       312 ~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~-~~iSRiTIVV~gd-e~~ieql~kQL~KL-idVi~V~dl  388 (484)
                      +|+.+|.|..+|+||=|-++..=.+.-|-||-++.=..... .+-...-|++.+| ++...++.+-+++. +.++++...
T Consensus         3 ~mritldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~~~d~~~~~~~i~~~~e~~Gi~I~~~dg~   82 (170)
T COG2061           3 QMRITLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVPVQIVFEGDREDKDAKIIRLLEEEGIIIIRFDGA   82 (170)
T ss_pred             ceEEEEEEEecCCCcchhhhhcchhhcCccEEEEEeecCcccCCceeEEEEEEecccHHHHHHHHHHHhCCcEEEEecCc
Confidence            57899999999999999999999999999998766555433 5667788888887 56677777777332 344444322


Q ss_pred             CCchhHHHhhheeEEecCccchHHHHHHHHHcCcEEEEec--------CC--EEEEEEeCCHHHHHHHHHHhcc
Q 011491          389 THLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVS--------DH--TITLELTGDLNKIIALQRLLEP  452 (484)
Q Consensus       389 t~~~~V~REL~LIKV~~~~~~r~eI~~la~ifrakIVDvs--------~~--si~iE~TG~~~Kidafi~lL~p  452 (484)
                      .  ...+-...||-=-+...-+.-|-.+-.+-+|.++|++        +.  -++++..| .+|++..++.|+.
T Consensus        83 ~--~~~~~~vvLIGhiv~tdiqDTId~In~ig~A~vvDl~L~Mp~~e~~SsA~iti~a~~-~e~l~ea~~~l~e  153 (170)
T COG2061          83 R--LREKTDVVLIGHIVHTDIQDTIDRINSIGGAEVVDLSLSMPGIEGESSARITIIAVG-KEKLDEALRRLKE  153 (170)
T ss_pred             C--cceeEeEEEEEeeecCcHHHHHHHhhccCCEEEEEEEeecCCCCCCcceeEEEEEcC-hhHHHHHHHHHHH
Confidence            2  2222234555434455556778888889999999984        22  35666665 4667666666654

>PRK06545 prephenate dehydrogenase; Validated

Probab=94.30  E-value=0.13  Score=53.33  Aligned_cols=65  Identities=22%  Similarity=0.312  Sum_probs=51.7

Q ss_pred             EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC--cEEEEEEeCChhHHHHHHHHHhcCcc
Q 011491           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK--ALFTIVVSGTERVLRQVVEQLNKLVN  144 (484)
Q Consensus        79 khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~--~~iTIVV~gde~~veQI~kQL~KLid  144 (484)
                      -|.+.|.+.|+||.|.+++.++.+.|+||+.+.+-++-+.  |.+.|.+.. +...++..+.|.+-..
T Consensus       290 ~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~  356 (359)
T PRK06545        290 FYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQISFKN-EEDRERAKALLEEFWT  356 (359)
T ss_pred             ceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEEeCC-HHHHHHHHHHHHhcCc
Confidence            4899999999999999999999999999999999766433  468888873 4456666666665443

>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins

Probab=94.28  E-value=0.13  Score=39.51  Aligned_cols=54  Identities=22%  Similarity=0.386  Sum_probs=38.3

Q ss_pred             EcCchhHHHHHHHHHhccCceeeeEeeeecCCC-cEEEEEEeCChhHHHHHHHHHhc
Q 011491           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIVVSGTERVLRQVVEQLNK  141 (484)
Q Consensus        86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~~iTIVV~gde~~veQI~kQL~K  141 (484)
                      +.|+||++.++...+++.|.||+.+..+..... ..+++++..  ...+++.+.|++
T Consensus         9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~~~~~~~~~~is~~v~~--~d~~~~~~~l~~   63 (75)
T cd04913           9 VPDKPGVAAKIFGALAEANINVDMIVQNVSRDGTTDISFTVPK--SDLKKALAVLEK   63 (75)
T ss_pred             CCCCCcHHHHHHHHHHHcCCeEEEEEeCCCCCCcEEEEEEecH--HHHHHHHHHHHH
Confidence            578999999999999999999998876654332 247777763  334444444444

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee

>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=94.22  E-value=0.19  Score=40.70  Aligned_cols=52  Identities=15%  Similarity=0.268  Sum_probs=44.1

Q ss_pred             EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh-----HHHHHHHHHHhc
Q 011491          321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD-----ESIGKLVQLLHK  378 (484)
Q Consensus       321 VeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde-----~~ieql~kQL~K  378 (484)
                      ..+.||++.||...+++.|+|++.++.++      .+++++++.++     +.+..|.+-|+|
T Consensus        11 l~~~~g~~~~if~~L~~~~I~v~~i~~s~------~~is~~v~~~~~~~~~~~~~~~~~~l~~   67 (75)
T cd04912          11 MLGAHGFLAKVFEIFAKHGLSVDLISTSE------VSVSLTLDPTKNLSDQLLLDALVKDLSQ   67 (75)
T ss_pred             CCCCccHHHHHHHHHHHcCCeEEEEEcCC------cEEEEEEEchhhccchHHHHHHHHHHHh
Confidence            46789999999999999999999886422      67999998654     478899999999

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=94.22  E-value=0.11  Score=52.77  Aligned_cols=64  Identities=14%  Similarity=0.142  Sum_probs=46.6

Q ss_pred             EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh--HHHHHHHHHHhc
Q 011491          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD--ESIGKLVQLLHK  378 (484)
Q Consensus       315 htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde--~~ieql~kQL~K  378 (484)
                      ++|++.-.|+||+.++||++++.+|.||..++..-....+.--|.+.++.++  ...+++...|+.
T Consensus         1 ~~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~~~~~~l~~~l~~   66 (280)
T TIGR00655         1 GILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFRLEESSLLAAFKS   66 (280)
T ss_pred             CEEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Confidence            3788999999999999999999999999999888765555555555555332  234444444433

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=93.98  E-value=0.29  Score=50.26  Aligned_cols=75  Identities=23%  Similarity=0.402  Sum_probs=60.5

Q ss_pred             CceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEeC--ChHHHHHHHHHHhcccceEEE
Q 011491          311 GLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPG--TDESIGKLVQLLHKLIDLHEV  385 (484)
Q Consensus       311 ~~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~-~~iSRiTIVV~g--de~~ieql~kQL~KLidVi~V  385 (484)
                      +..+.+|.+.+.|+||.|-++.+.|+.||+|+..|.--|+.. ++-..+-|=+.|  ++..+.+.++.|.++-..+++
T Consensus       191 ~~~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg~~~~~~v~~AL~el~~~t~~~ki  268 (279)
T COG0077         191 GPEKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEGHIDDPLVKEALEELKEITEFVKI  268 (279)
T ss_pred             CCceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEecCcCcHhHHHHHHHHHhheeEEEE
Confidence            455788999999999999999999999999999999998874 565666666665  556688888888877665554

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=93.92  E-value=0.23  Score=50.88  Aligned_cols=72  Identities=19%  Similarity=0.409  Sum_probs=56.7

Q ss_pred             ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-c-E-EEEEE--eCChhHHHHHHHHHhcCcceeEE
Q 011491           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-A-L-FTIVV--SGTERVLRQVVEQLNKLVNVIKV  148 (484)
Q Consensus        77 ~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~-~-iTIVV--~gde~~veQI~kQL~KLidVikV  148 (484)
                      -.+.+|.+.+.|+||.|.++.+.|+.||+|...|---|+... + . +-|=+  +.++..+++.++.|.++-..+|+
T Consensus       192 ~~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg~~~~~~v~~AL~el~~~t~~~ki  268 (279)
T COG0077         192 PEKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEGHIDDPLVKEALEELKEITEFVKI  268 (279)
T ss_pred             CceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEecCcCcHhHHHHHHHHHhheeEEEE
Confidence            357889999999999999999999999999999998887643 3 2 44434  45666788888888877665555

>PRK11898 prephenate dehydratase; Provisional

Probab=93.84  E-value=0.33  Score=49.35  Aligned_cols=67  Identities=18%  Similarity=0.349  Sum_probs=50.5

Q ss_pred             eEEEEEEEEcCc-hhHHHHHHHHHhccCceeeeEeeeecCCC--cE-EEEEEeC--ChhHHHHHHHHHhcCcc
Q 011491           78 KRHTISVFVGDE-SGIINRIAGVFARRGYNIESLAVGLNVDK--AL-FTIVVSG--TERVLRQVVEQLNKLVN  144 (484)
Q Consensus        78 ~khtISilVeN~-pGVL~RIagLFsRRGyNIeSLtVg~Ted~--~~-iTIVV~g--de~~veQI~kQL~KLid  144 (484)
                      .+..|.+.+.|+ ||.|.++.+.|+++|+|+.+|---|....  .+ +=+-++|  ++..++++++.|.+...
T Consensus       195 ~ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~~~~~~~~~al~~L~~~~~  267 (283)
T PRK11898        195 DKTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGHIDDVLVAEALKELEALGE  267 (283)
T ss_pred             CeEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEccCCCHHHHHHHHHHHHhcC
Confidence            356777777665 99999999999999999999998886543  22 3333444  44578999999988654

>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=93.83  E-value=0.14  Score=42.10  Aligned_cols=56  Identities=14%  Similarity=0.326  Sum_probs=44.0

Q ss_pred             EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChH----HHH-HHHHHHhcccce
Q 011491          321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDE----SIG-KLVQLLHKLIDL  382 (484)
Q Consensus       321 VeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~----~ie-ql~kQL~KLidV  382 (484)
                      +.+.||++.+|...|++.|+||+-++.++      ..++++++.++.    .+. .|.+-|+|+-+|
T Consensus        11 ~~~~~g~~~~IF~~La~~~I~VDmI~~s~------~~iSftv~~~d~~~~~~~~~~l~~~l~~~~~v   71 (75)
T cd04932          11 MLHAQGFLAKVFGILAKHNISVDLITTSE------ISVALTLDNTGSTSDQLLTQALLKELSQICDV   71 (75)
T ss_pred             CCCCcCHHHHHHHHHHHcCCcEEEEeecC------CEEEEEEeccccchhHHHHHHHHHHHHhccEE
Confidence            57889999999999999999999997522      568999986653    244 688888885444

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein

Probab=93.80  E-value=0.25  Score=40.58  Aligned_cols=56  Identities=16%  Similarity=0.365  Sum_probs=44.0

Q ss_pred             EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh-----hHHHHHHHHHhcCcce
Q 011491           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE-----RVLRQVVEQLNKLVNV  145 (484)
Q Consensus        86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde-----~~veQI~kQL~KLidV  145 (484)
                      ..+.||++.+|.+.|++.|.|++-++.+.    .-+++++..++     +.+++|.+.|+++=+|
T Consensus        11 ~~~~~g~~~~IF~~La~~~I~vDmI~~s~----~~isftv~~~~~~~~~~~~~~l~~el~~~~~v   71 (75)
T cd04935          11 MWQQVGFLADVFAPFKKHGVSVDLVSTSE----TNVTVSLDPDPNGLDPDVLDALLDDLNQICRV   71 (75)
T ss_pred             CCCccCHHHHHHHHHHHcCCcEEEEEeCC----CEEEEEEeCcccccchHHHHHHHHHHHhceEE
Confidence            46789999999999999999999997422    44777777544     3788999999985433

This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=93.73  E-value=0.067  Score=44.88  Aligned_cols=62  Identities=16%  Similarity=0.197  Sum_probs=47.5

Q ss_pred             EEEEEEcC-chhHHHHHHHHHhccCceeeeEeeeecCC---------Cc-EEEEEEeCChhHHHHHHHHHhcCc
Q 011491           81 TISVFVGD-ESGIINRIAGVFARRGYNIESLAVGLNVD---------KA-LFTIVVSGTERVLRQVVEQLNKLV  143 (484)
Q Consensus        81 tISilVeN-~pGVL~RIagLFsRRGyNIeSLtVg~Ted---------~~-~iTIVV~gde~~veQI~kQL~KLi  143 (484)
                      +++++-.+ ++|.+++|+.+++.+|+||+.++-= +..         +- .|.+.+.+.+..++.+.++|.++-
T Consensus         1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l-~~~~~~~~~~~~~~~~~e~~v~~~~~~~~~lr~~L~~la   73 (84)
T cd04871           1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRL-SGRVPLEEQDDSPKACVEFSVRGQPADLEALRAALLELA   73 (84)
T ss_pred             CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHh-hccccccccCCCCcEEEEEEEeCCCCCHHHHHHHHHHHh
Confidence            36788888 9999999999999999999988762 111         22 367777877777888888886553

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=93.68  E-value=0.62  Score=48.72  Aligned_cols=128  Identities=17%  Similarity=0.243  Sum_probs=88.9

Q ss_pred             EEEEEE---EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhcCcceeEEEecCCchh
Q 011491           80 HTISVF---VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPH  156 (484)
Q Consensus        80 htISil---VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~KLidVikV~dlt~~~~  156 (484)
                      ..+++.   +.|+||++.|+...|.+.|+||+.++.+.++  .-++++++.  +..+++.+.|++...-.....+    .
T Consensus       261 a~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~--~~Is~~V~~--~d~~~a~~~L~~~~~~~~~~~i----~  332 (401)
T TIGR00656       261 TRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSE--TSISLTVDE--TDADEAVRALKDQSGAAGLDRV----E  332 (401)
T ss_pred             EEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCC--ceEEEEEeH--HHHHHHHHHHHHHHHhcCCceE----E
Confidence            457776   7899999999999999999999999876543  347788853  3456666666664322111111    2


Q ss_pred             hhhhheeEEEeCCC-----CCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 011491          157 VERELMLIKLNGDT-----STWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK  215 (484)
Q Consensus       157 V~RELaLiKV~~~~-----~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~  215 (484)
                      +.+.+++|-|-...     ..-..+++.....+.+|.-++....-+-+.=+.+..+..++.|..
T Consensus       333 ~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i~~s~~~is~vv~~~d~~~av~~Lh~  396 (401)
T TIGR00656       333 VEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILMIGSSETNISFLVDEKDAEKAVRKLHE  396 (401)
T ss_pred             EeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEEcCCCEEEEEEeHHHHHHHHHHHHH
Confidence            56778888886543     234578888888889998888766666666666777777777653

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=93.67  E-value=0.078  Score=44.48  Aligned_cols=63  Identities=24%  Similarity=0.345  Sum_probs=48.1

Q ss_pred             EEEEEeC-chhHHHHHHHHHhccCceeeeeeeee-------cCCCCeEEEEEEEeCChHHHHHHHHHHhcc
Q 011491          317 LSMLVNN-TPGVLNIVTGVISRRGYNIQSLAVGP-------AEKEGLSCITTVVPGTDESIGKLVQLLHKL  379 (484)
Q Consensus       317 LsilVeN-~pGVL~RVtglFsRRGyNIeSLtVg~-------te~~~iSRiTIVV~gde~~ieql~kQL~KL  379 (484)
                      ++++-.+ ++|.+.+|+.+++.+|.||+.+.-=.       ...+...-|.+.+.|.+...+.+.++|.++
T Consensus         2 vtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~~~~~~~lr~~L~~l   72 (84)
T cd04871           2 VTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQPADLEALRAALLEL   72 (84)
T ss_pred             EEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCCCCCHHHHHHHHHHH
Confidence            6788888 99999999999999999999887621       112234567777887767777777777655

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>PRK08198 threonine dehydratase; Provisional

Probab=93.61  E-value=0.33  Score=50.92  Aligned_cols=65  Identities=11%  Similarity=0.196  Sum_probs=51.5

Q ss_pred             eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCC---Cc--EEEEEEeC-ChhHHHHHHHHHhcC
Q 011491           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD---KA--LFTIVVSG-TERVLRQVVEQLNKL  142 (484)
Q Consensus        78 ~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted---~~--~iTIVV~g-de~~veQI~kQL~KL  142 (484)
                      +..++++.+.|+||.|.++..+++..|.||.+++..+...   .+  .++++++. +.+.+++|++.|++.
T Consensus       326 r~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~~~~~~~~~l~~~L~~~  396 (404)
T PRK08198        326 RYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLETRGPEHIEEILDALRDA  396 (404)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence            4579999999999999999999999999999999875321   23  26666663 455788899988764

>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric

Probab=93.55  E-value=0.38  Score=52.46  Aligned_cols=79  Identities=19%  Similarity=0.238  Sum_probs=63.0

Q ss_pred             CCCCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCe--EEEEEEEeCChHHHHHHHHHHhcccceEEE
Q 011491          308 DPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGL--SCITTVVPGTDESIGKLVQLLHKLIDLHEV  385 (484)
Q Consensus       308 ~~~~~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~i--SRiTIVV~gde~~ieql~kQL~KLidVi~V  385 (484)
                      +.++..+-+|.+.+.|+||.|.++..+|..+|+|+..|.--|+....-  ..+-|-+.|+...+.++++.|.+..+.++|
T Consensus        25 ~~~~~~ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~Eg~~~~l~~aL~~Lk~~~~~~~~  104 (464)
T TIGR01270        25 EEEGVQRLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVELFHYGLQEAMDLLKSGLDVHEV  104 (464)
T ss_pred             cCCCCceEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEEcCHHHHHHHHHHHHHhccccee
Confidence            445555667777779999999999999999999999999888754432  355566678888899999999998887666


Q ss_pred             e
Q 011491          386 Q  386 (484)
Q Consensus       386 ~  386 (484)
                      .
T Consensus       105 ~  105 (464)
T TIGR01270       105 S  105 (464)
T ss_pred             c
Confidence            4

This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.

>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins

Probab=93.49  E-value=0.28  Score=36.05  Aligned_cols=51  Identities=18%  Similarity=0.309  Sum_probs=37.6

Q ss_pred             EcCchhHHHHHHHHHhccCceeeeEeeeecCCCc-EEEEEEeCChhHHHHHHHH
Q 011491           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKA-LFTIVVSGTERVLRQVVEQ  138 (484)
Q Consensus        86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~-~iTIVV~gde~~veQI~kQ  138 (484)
                      +.|.||++.++...+++.|.||+.++.++..... .+++++..  +..++..+.
T Consensus         8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v~~--~~~~~~~~~   59 (61)
T cd04891           8 VPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVPK--SDLEKALAI   59 (61)
T ss_pred             CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEEeH--HHHHHHHHH
Confidence            5789999999999999999999999887644322 37777753  334444443

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=93.46  E-value=2.2  Score=40.83  Aligned_cols=137  Identities=22%  Similarity=0.258  Sum_probs=94.1

Q ss_pred             cceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-cE--EEEEEeCC-hhHHHHHHHHHhc-CcceeEEEe
Q 011491           76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-AL--FTIVVSGT-ERVLRQVVEQLNK-LVNVIKVED  150 (484)
Q Consensus        76 ~~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~~--iTIVV~gd-e~~veQI~kQL~K-LidVikV~d  150 (484)
                      .+|+-++.|-..|+||=|-++..=++.-|-||-++.=...... .+  +.|++.+| +.....+.+-+++ =+.++++..
T Consensus         2 ~~mritldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~~~d~~~~~~~i~~~~e~~Gi~I~~~dg   81 (170)
T COG2061           2 FQMRITLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVPVQIVFEGDREDKDAKIIRLLEEEGIIIIRFDG   81 (170)
T ss_pred             cceEEEEEEEecCCCcchhhhhcchhhcCccEEEEEeecCcccCCceeEEEEEEecccHHHHHHHHHHHhCCcEEEEecC
Confidence            3688999999999999999999999999999988775544332 23  77888877 5556667777733 355555543


Q ss_pred             cCCchhhhhhheeEEEeCCCCCHHHHHHHHHhcCcEEEEec--------CCE--EEEEEeCChhHHHHHHHHhcc
Q 011491          151 ISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDIS--------EHA--LTIEVTGDPGKMVAVQRNLSK  215 (484)
Q Consensus       151 lt~~~~V~RELaLiKV~~~~~~r~eI~~l~~~FrAkIVDvs--------~~s--l~iE~TG~~~KIdafi~~L~~  215 (484)
                      ..-.  .+-...||-=-+...-+.-|-.+-.+-+|.+||++        +.+  ++|+..| .+|++..++.|+.
T Consensus        82 ~~~~--~~~~vvLIGhiv~tdiqDTId~In~ig~A~vvDl~L~Mp~~e~~SsA~iti~a~~-~e~l~ea~~~l~e  153 (170)
T COG2061          82 ARLR--EKTDVVLIGHIVHTDIQDTIDRINSIGGAEVVDLSLSMPGIEGESSARITIIAVG-KEKLDEALRRLKE  153 (170)
T ss_pred             cCcc--eeEeEEEEEeeecCcHHHHHHHhhccCCEEEEEEEeecCCCCCCcceeEEEEEcC-hhHHHHHHHHHHH
Confidence            3221  22234455434455567788888899999999984        233  5555555 5677777776654

>PRK08818 prephenate dehydrogenase; Provisional

Probab=93.36  E-value=0.14  Score=54.19  Aligned_cols=52  Identities=21%  Similarity=0.294  Sum_probs=41.7

Q ss_pred             EEEEEEEEe-CchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh
Q 011491          314 SHTLSMLVN-NTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD  366 (484)
Q Consensus       314 ~htLsilVe-N~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde  366 (484)
                      .|.|.+.+. |+||.|.+|+++|+++|+||.+|....+....+. +-|-+.+.+
T Consensus       295 ~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r~~~y~-f~i~~~~~~  347 (370)
T PRK08818        295 PLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTPAGELH-FRIGFEPGS  347 (370)
T ss_pred             ceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEecccCceEE-EEEEEeccc
Confidence            488999995 9999999999999999999999999555444444 666666543

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=93.35  E-value=0.4  Score=50.11  Aligned_cols=127  Identities=13%  Similarity=0.169  Sum_probs=86.5

Q ss_pred             EEEEEE---EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEeccCCc
Q 011491          315 HTLSML---VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHL  391 (484)
Q Consensus       315 htLsil---VeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dlt~~  391 (484)
                      ..+++.   +.|+||++.|+...|.+.|+||+.++.+.++    ..++++++.  +..+++++.|++...-.....    
T Consensus       261 a~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~----~~Is~~V~~--~d~~~a~~~L~~~~~~~~~~~----  330 (401)
T TIGR00656       261 TRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSE----TSISLTVDE--TDADEAVRALKDQSGAAGLDR----  330 (401)
T ss_pred             EEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCC----ceEEEEEeH--HHHHHHHHHHHHHHHhcCCce----
Confidence            356666   7899999999999999999999999887654    347888863  346666777766532111111    


Q ss_pred             hhHHHhhheeEEecCcc-----chHHHHHHHHHcCcEEEEecCCEEEEEEeCCHHHHHHHHHHhc
Q 011491          392 PFAERELILIKIAVNTA-----ARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLE  451 (484)
Q Consensus       392 ~~V~REL~LIKV~~~~~-----~r~eI~~la~ifrakIVDvs~~si~iE~TG~~~Kidafi~lL~  451 (484)
                      -.+.+.+++|-|--..-     .-..+++.....+.+|.-++....-+-+.=+.+..+..++.|.
T Consensus       331 i~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i~~s~~~is~vv~~~d~~~av~~Lh  395 (401)
T TIGR00656       331 VEVEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILMIGSSETNISFLVDEKDAEKAVRKLH  395 (401)
T ss_pred             EEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEEcCCCEEEEEEeHHHHHHHHHHHH
Confidence            12456677777754331     1247888888888889888776566666556666676666664

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins

Probab=93.11  E-value=0.31  Score=35.78  Aligned_cols=53  Identities=23%  Similarity=0.419  Sum_probs=39.5

Q ss_pred             EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHH
Q 011491          321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLL  376 (484)
Q Consensus       321 VeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL  376 (484)
                      +.|.||++.++...+.+.|.||+.++.++... +...++++++.  +..++.++.|
T Consensus         8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~-~~~~is~~v~~--~~~~~~~~~l   60 (61)
T cd04891           8 VPDKPGVAAKIFSALAEAGINVDMIVQSVSRG-GTTDISFTVPK--SDLEKALAIL   60 (61)
T ss_pred             CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCC-CcEEEEEEEeH--HHHHHHHHHh
Confidence            57899999999999999999999998876543 33567777763  3445544443

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional

Probab=93.10  E-value=0.43  Score=50.71  Aligned_cols=68  Identities=16%  Similarity=0.128  Sum_probs=55.2

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEeCC--hHHHHHHHHHHhcccc
Q 011491          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPGT--DESIGKLVQLLHKLID  381 (484)
Q Consensus       314 ~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~-~~iSRiTIVV~gd--e~~ieql~kQL~KLid  381 (484)
                      +-+|.+.+.|+||.|.++.+.|+.||+|+.+|.--|+.. ++-..+-|=+.|.  +..+++.+++|++.-.
T Consensus       297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg~~~d~~~~~aL~~l~~~~~  367 (386)
T PRK10622        297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQANLRSAEMQKALKELGEITR  367 (386)
T ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeCCCCCHHHHHHHHHHHHhcC
Confidence            566777778999999999999999999999999988765 4556666667764  4568888888888654

>PRK03059 PII uridylyl-transferase; Provisional

Probab=92.88  E-value=0.3  Score=56.70  Aligned_cols=68  Identities=21%  Similarity=0.283  Sum_probs=51.4

Q ss_pred             eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeC----ChhHHHHHHHHHhcCcce
Q 011491           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSG----TERVLRQVVEQLNKLVNV  145 (484)
Q Consensus        78 ~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~g----de~~veQI~kQL~KLidV  145 (484)
                      ....|.|...|+||+|.+|+++|++.|+||.+-.+..+.+.-.=++.|.+    +++..+.|.+.|.+.++|
T Consensus       785 ~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~~~~~~~~~~~~l~~~L~~~L~~  856 (856)
T PRK03059        785 QYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDGSGLSDNRLQIQLETELLDALAV  856 (856)
T ss_pred             CEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcCCCCCCHHHHHHHHHHHHHHhcC
Confidence            45789999999999999999999999999999888877222222333332    346678888888776654

>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains

Probab=92.87  E-value=0.28  Score=40.21  Aligned_cols=56  Identities=11%  Similarity=0.213  Sum_probs=44.4

Q ss_pred             EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh--H-HHHHHHHHHhcccce
Q 011491          321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD--E-SIGKLVQLLHKLIDL  382 (484)
Q Consensus       321 VeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde--~-~ieql~kQL~KLidV  382 (484)
                      ....||++.+|.+.|++.|.|++-+..++      ..++++++.++  + .++.|.+-|+|+-+|
T Consensus        11 m~~~~g~~~~If~~la~~~I~vd~I~~s~------~~isftv~~~~~~~~~l~~l~~el~~~~~v   69 (73)
T cd04934          11 KSLSHGFLARIFAILDKYRLSVDLISTSE------VHVSMALHMENAEDTNLDAAVKDLQKLGTV   69 (73)
T ss_pred             CccccCHHHHHHHHHHHcCCcEEEEEeCC------CEEEEEEehhhcChHHHHHHHHHHHHheEE
Confidence            35579999999999999999999997522      66889998542  3 788999999985443

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro

>PRK08818 prephenate dehydrogenase; Provisional

Probab=92.86  E-value=0.3  Score=51.65  Aligned_cols=50  Identities=26%  Similarity=0.397  Sum_probs=39.5

Q ss_pred             EEEEEEEEc-CchhHHHHHHHHHhccCceeeeEeeeecCCCcE-EEEEEeCC
Q 011491           79 RHTISVFVG-DESGIINRIAGVFARRGYNIESLAVGLNVDKAL-FTIVVSGT  128 (484)
Q Consensus        79 khtISilVe-N~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~-iTIVV~gd  128 (484)
                      -|.|.+.+. |+||+|.+|+++|+++|+||.+|....+..... +-|-+.+.
T Consensus       295 ~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r~~~y~f~i~~~~~  346 (370)
T PRK08818        295 PLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTPAGELHFRIGFEPG  346 (370)
T ss_pred             ceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEecccCceEEEEEEEecc
Confidence            578999995 999999999999999999999999854433332 55555543

>PRK12483 threonine dehydratase; Reviewed

Probab=92.83  E-value=2.5  Score=46.86  Aligned_cols=132  Identities=14%  Similarity=0.207  Sum_probs=90.8

Q ss_pred             eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-cEEEEEE--eCChhHHHHHHHHHhcCcceeEEEecCCc
Q 011491           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIVV--SGTERVLRQVVEQLNKLVNVIKVEDISNE  154 (484)
Q Consensus        78 ~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~~iTIVV--~gde~~veQI~kQL~KLidVikV~dlt~~  154 (484)
                      +++.+++...++||-|.+++.+++.+  ||..+.--..... ..+.+++  .+.+...++|+++|++.=  .++.++++.
T Consensus       344 r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~~~~~~~~~i~~~l~~~g--~~~~dlsdn  419 (521)
T PRK12483        344 REAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQTHPRHDPRAQLLASLRAQG--FPVLDLTDD  419 (521)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEEeCChhhhHHHHHHHHHHCC--CCeEECCCC
Confidence            57899999999999999999999988  9998876542222 2344444  444444499999997643  577888886


Q ss_pred             hh---------------hhhhheeEEEeCCCCCHHHHHHHHHhcCcE--EEEe-----cCCE----EEEEEeCChhHHHH
Q 011491          155 PH---------------VERELMLIKLNGDTSTWPEIMWLVDIFRAK--VVDI-----SEHA----LTIEVTGDPGKMVA  208 (484)
Q Consensus       155 ~~---------------V~RELaLiKV~~~~~~r~eI~~l~~~FrAk--IVDv-----s~~s----l~iE~TG~~~KIda  208 (484)
                      +.               +.|| +|+.|..+ +......+.++.++-+  |-..     +.+.    +=|++.  .++.++
T Consensus       420 e~~k~h~r~~~g~~~~~~~~E-~~~~v~iP-E~pGa~~~f~~~l~~~~niTeF~YR~~~~~~a~v~vgi~~~--~~~~~~  495 (521)
T PRK12483        420 ELAKLHIRHMVGGRAPLAHDE-RLFRFEFP-ERPGALMKFLSRLGPRWNISLFHYRNHGAADGRVLAGLQVP--EDERAA  495 (521)
T ss_pred             HHHHHHHHhccCCCCCCCCce-EEEEEEcC-CCCcHHHHHHHHhCCCcceeeeeecCCCCCceEEEEEEeeC--hhHHHH
Confidence            65               3455 47777765 6667788888888762  2221     1111    236763  366788


Q ss_pred             HHHHhccCC
Q 011491          209 VQRNLSKFG  217 (484)
Q Consensus       209 fi~~L~~fG  217 (484)
                      |++.|+..|
T Consensus       496 ~~~~l~~~g  504 (521)
T PRK12483        496 LDAALAALG  504 (521)
T ss_pred             HHHHHHHCC
Confidence            999988765

>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=92.75  E-value=0.51  Score=38.24  Aligned_cols=52  Identities=15%  Similarity=0.424  Sum_probs=42.8

Q ss_pred             EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh-----hHHHHHHHHHhc
Q 011491           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE-----RVLRQVVEQLNK  141 (484)
Q Consensus        86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde-----~~veQI~kQL~K  141 (484)
                      ..+.||++.||...|++.|+|++.++.+    +..+++++..++     ..+..|.+-|+|
T Consensus        11 l~~~~g~~~~if~~L~~~~I~v~~i~~s----~~~is~~v~~~~~~~~~~~~~~~~~~l~~   67 (75)
T cd04912          11 MLGAHGFLAKVFEIFAKHGLSVDLISTS----EVSVSLTLDPTKNLSDQLLLDALVKDLSQ   67 (75)
T ss_pred             CCCCccHHHHHHHHHHHcCCeEEEEEcC----CcEEEEEEEchhhccchHHHHHHHHHHHh
Confidence            5678999999999999999999988632    245888887554     488899999999

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD

>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional

Probab=92.73  E-value=0.39  Score=51.03  Aligned_cols=68  Identities=12%  Similarity=0.191  Sum_probs=53.4

Q ss_pred             EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-c-E-EEEEEeC--ChhHHHHHHHHHhcCccee
Q 011491           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-A-L-FTIVVSG--TERVLRQVVEQLNKLVNVI  146 (484)
Q Consensus        79 khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~-~-iTIVV~g--de~~veQI~kQL~KLidVi  146 (484)
                      +-.|.+.+.|+||.|.++.+.|+.||+|+.+|---|+... + + +=|-+.|  ++..+++.+++|++.-.-+
T Consensus       297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg~~~d~~~~~aL~~l~~~~~~~  369 (386)
T PRK10622        297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQANLRSAEMQKALKELGEITRSL  369 (386)
T ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeCCCCCHHHHHHHHHHHHhcCcE
Confidence            6677788899999999999999999999999998887655 2 2 4444555  4567888888888765433

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=92.73  E-value=0.58  Score=38.93  Aligned_cols=74  Identities=18%  Similarity=0.234  Sum_probs=52.8

Q ss_pred             EEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecC-CCcEEEEEEeC-C-hhHHHHHHHHHhcCcceeEEEecCCchh
Q 011491           80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKALFTIVVSG-T-ERVLRQVVEQLNKLVNVIKVEDISNEPH  156 (484)
Q Consensus        80 htISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Te-d~~~iTIVV~g-d-e~~veQI~kQL~KLidVikV~dlt~~~~  156 (484)
                      .++.+.+.|+||-|.+++.+++  |.||..+.-.... +.+.+.++++. + .+.++++.+.|++.=  .++.++++.+.
T Consensus         2 ~vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~~~~~~~~i~~~L~~~G--~~~~~~~~~~~   77 (85)
T cd04906           2 ALLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVANGAEELAELLEDLKSAG--YEVVDLSDDEL   77 (85)
T ss_pred             eEEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCCcHHHHHHHHHHHHHCC--CCeEECCCCHH
Confidence            4789999999999999999999  7788876665433 33445555553 3 467888888887743  35666676654


Q ss_pred             h
Q 011491          157 V  157 (484)
Q Consensus       157 V  157 (484)
                      .
T Consensus        78 ~   78 (85)
T cd04906          78 A   78 (85)
T ss_pred             H
Confidence            4

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11898 prephenate dehydratase; Provisional

Probab=92.69  E-value=0.67  Score=47.15  Aligned_cols=68  Identities=22%  Similarity=0.326  Sum_probs=52.7

Q ss_pred             EEEEEEEEeCc-hhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEeCC--hHHHHHHHHHHhcccc
Q 011491          314 SHTLSMLVNNT-PGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPGT--DESIGKLVQLLHKLID  381 (484)
Q Consensus       314 ~htLsilVeN~-pGVL~RVtglFsRRGyNIeSLtVg~te~-~~iSRiTIVV~gd--e~~ieql~kQL~KLid  381 (484)
                      +-.|.+.+.|+ ||.|.++.+.|+++|+|+..|.--|... +.-..+-+-+.|+  +..+.++++.|++.-.
T Consensus       196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~~~~~~~~~al~~L~~~~~  267 (283)
T PRK11898        196 KTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGHIDDVLVAEALKELEALGE  267 (283)
T ss_pred             eEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEccCCCHHHHHHHHHHHHhcC
Confidence            56777777664 9999999999999999999999988653 3445555556654  3478999999988654

>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=92.61  E-value=0.35  Score=39.78  Aligned_cols=56  Identities=13%  Similarity=0.392  Sum_probs=42.2

Q ss_pred             EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChh----HHH-HHHHHHhcCcce
Q 011491           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTER----VLR-QVVEQLNKLVNV  145 (484)
Q Consensus        86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~----~ve-QI~kQL~KLidV  145 (484)
                      +.+.||++.+|...|++.|+||+-++.++    .-+++++..++.    .+. .|.+-|+|+-+|
T Consensus        11 ~~~~~g~~~~IF~~La~~~I~VDmI~~s~----~~iSftv~~~d~~~~~~~~~~l~~~l~~~~~v   71 (75)
T cd04932          11 MLHAQGFLAKVFGILAKHNISVDLITTSE----ISVALTLDNTGSTSDQLLTQALLKELSQICDV   71 (75)
T ss_pred             CCCCcCHHHHHHHHHHHcCCcEEEEeecC----CEEEEEEeccccchhHHHHHHHHHHHHhccEE
Confidence            57889999999999999999999997522    347777776553    344 577888884433

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=92.51  E-value=0.33  Score=37.29  Aligned_cols=49  Identities=14%  Similarity=0.327  Sum_probs=39.7

Q ss_pred             eCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh--HHHHHHHHHH
Q 011491          322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD--ESIGKLVQLL  376 (484)
Q Consensus       322 eN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde--~~ieql~kQL  376 (484)
                      .++||+..+|..+|.+.|.|++.++.++      -.+++++..++  +.++.|++.|
T Consensus        11 ~~~~~~~~~if~~l~~~~i~v~~i~t~~------~~is~~v~~~~~~~~~~~l~~~l   61 (62)
T cd04890          11 NGEVGFLRKIFEILEKHGISVDLIPTSE------NSVTLYLDDSLLPKKLKRLLAEL   61 (62)
T ss_pred             CcccCHHHHHHHHHHHcCCeEEEEecCC------CEEEEEEehhhhhHHHHHHHHhh
Confidence            4679999999999999999999996422      56899998665  6777777765

This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel

>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3

Probab=92.42  E-value=0.3  Score=37.63  Aligned_cols=52  Identities=19%  Similarity=0.302  Sum_probs=40.6

Q ss_pred             eCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcc
Q 011491          322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKL  379 (484)
Q Consensus       322 eN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KL  379 (484)
                      .++||++.++...+++.|.|++.++.+.++    .++.++++.+  ..++.++.|+|.
T Consensus        12 ~~~~~~~~~if~~L~~~~I~v~~i~q~~s~----~~isf~v~~~--~~~~a~~~lh~~   63 (66)
T cd04919          12 KNMIGIAGRMFTTLADHRINIEMISQGASE----INISCVIDEK--DAVKALNIIHTN   63 (66)
T ss_pred             CCCcCHHHHHHHHHHHCCCCEEEEEecCcc----ceEEEEEeHH--HHHHHHHHHHHH
Confidence            468999999999999999999999876643    6788888854  355556666653

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains

Probab=92.25  E-value=0.56  Score=35.18  Aligned_cols=52  Identities=23%  Similarity=0.404  Sum_probs=39.2

Q ss_pred             EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhccc
Q 011491          321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLI  380 (484)
Q Consensus       321 VeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLi  380 (484)
                      ..+.||++.++.+.+++.|.|++.++..  +    .+++++++.  ...+++.+-|+|..
T Consensus        10 ~~~~~~~~~~i~~~L~~~~i~v~~i~~s--~----~~is~~v~~--~d~~~~~~~l~~~~   61 (63)
T cd04936          10 MRSHPGVAAKMFEALAEAGINIEMISTS--E----IKISCLIDE--DDAEKAVRALHEAF   61 (63)
T ss_pred             CCCCccHHHHHHHHHHHCCCcEEEEEcc--C----ceEEEEEeH--HHHHHHHHHHHHHh
Confidence            4577999999999999999999998742  1    568888874  34555666666543

This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu

>PRK05092 PII uridylyl-transferase; Provisional

Probab=92.21  E-value=0.43  Score=55.77  Aligned_cols=66  Identities=15%  Similarity=0.170  Sum_probs=49.1

Q ss_pred             eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc-E--EEEEE-e----CChhHHHHHHHHHhcCcc
Q 011491           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA-L--FTIVV-S----GTERVLRQVVEQLNKLVN  144 (484)
Q Consensus        78 ~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~-~--iTIVV-~----gde~~veQI~kQL~KLid  144 (484)
                      ....|.|...|+||+|.+|++.|++.|+||.+..+.. .+.. .  +.+.- +    .++...+.|.+.|.+.++
T Consensus       842 ~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T-~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~  915 (931)
T PRK05092        842 RFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIAT-YGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALA  915 (931)
T ss_pred             CeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEE-cCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhc
Confidence            3478999999999999999999999999999999984 4332 2  33332 1    234457778888866653

>PRK12483 threonine dehydratase; Reviewed

Probab=92.01  E-value=3.1  Score=46.03  Aligned_cols=133  Identities=16%  Similarity=0.192  Sum_probs=92.8

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC-ChHHH-HHHHHHHhcccceEEEeccCC
Q 011491          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG-TDESI-GKLVQLLHKLIDLHEVQDITH  390 (484)
Q Consensus       313 ~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~g-de~~i-eql~kQL~KLidVi~V~dlt~  390 (484)
                      +.+.+++...++||-|.+++.+++.+  ||..+.-... ..+-..+.+++.. +.+.. ++|++.|++.=  .++.++++
T Consensus       344 r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~-~~~~~~v~v~ie~~~~~~~~~~i~~~l~~~g--~~~~dlsd  418 (521)
T PRK12483        344 REAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYA-DAREAHLFVGVQTHPRHDPRAQLLASLRAQG--FPVLDLTD  418 (521)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEec-CCCeeEEEEEEEeCChhhhHHHHHHHHHHCC--CCeEECCC
Confidence            46899999999999999999999988  9998777653 3344677777763 33454 99999997643  46788888


Q ss_pred             chhH---------------HHhhheeEEecCccchHHHHHHHHHcCcE--EEEec-----CC----EEEEEEeCCHHHHH
Q 011491          391 LPFA---------------ERELILIKIAVNTAARRDVLDIAKIFRAR--AVDVS-----DH----TITLELTGDLNKII  444 (484)
Q Consensus       391 ~~~V---------------~REL~LIKV~~~~~~r~eI~~la~ifrak--IVDvs-----~~----si~iE~TG~~~Kid  444 (484)
                      .+..               .|| +|+.|..+ +.....++.++.++-+  |-..+     .+    .+=|++.  .++.+
T Consensus       419 ne~~k~h~r~~~g~~~~~~~~E-~~~~v~iP-E~pGa~~~f~~~l~~~~niTeF~YR~~~~~~a~v~vgi~~~--~~~~~  494 (521)
T PRK12483        419 DELAKLHIRHMVGGRAPLAHDE-RLFRFEFP-ERPGALMKFLSRLGPRWNISLFHYRNHGAADGRVLAGLQVP--EDERA  494 (521)
T ss_pred             CHHHHHHHHhccCCCCCCCCce-EEEEEEcC-CCCcHHHHHHHHhCCCcceeeeeecCCCCCceEEEEEEeeC--hhHHH
Confidence            7663               344 36677654 4556788888877752  22211     11    1336763  37778


Q ss_pred             HHHHHhccCC
Q 011491          445 ALQRLLEPYG  454 (484)
Q Consensus       445 afi~lL~pyG  454 (484)
                      +|++.|+..|
T Consensus       495 ~~~~~l~~~g  504 (521)
T PRK12483        495 ALDAALAALG  504 (521)
T ss_pred             HHHHHHHHCC
Confidence            9999998776

>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]

Probab=91.72  E-value=0.7  Score=44.22  Aligned_cols=71  Identities=21%  Similarity=0.376  Sum_probs=55.8

Q ss_pred             ceEEEEEEEE--cCchhHHHHHHHHHhccCceeeeEeeeec--CCCcEEEEEEeCChhHHHHHHHHHhcCcceeEEE
Q 011491           77 VKRHTISVFV--GDESGIINRIAGVFARRGYNIESLAVGLN--VDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVE  149 (484)
Q Consensus        77 ~~khtISilV--eN~pGVL~RIagLFsRRGyNIeSLtVg~T--ed~~~iTIVV~gde~~veQI~kQL~KLidVikV~  149 (484)
                      |-.++|.++.  .+.||+|+.|+++.+.||++|..+-....  .++.++||++++  ..-..++.||.|+--|.+|.
T Consensus        91 lG~gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~dpe~~~e~~l~IVte~--~iP~~li~el~~i~gVk~i~  165 (167)
T COG2150          91 LGLGVIEIYPEDARYPGILAGVASLIAKRGISIRQIISEDPELQEEPKLTIVTER--PIPGDLIDELKKIDGVKKIS  165 (167)
T ss_pred             cCCeEEEEEeccCCCccHHHHHHHHHHHcCceEEEEecCCcccCCCceEEEEEec--cCCHHHHHHHhcccCceeEE
Confidence            4567888887  46799999999999999999998776533  344579999864  45566889999998888775

>PRK02047 hypothetical protein; Provisional

Probab=91.65  E-value=1.9  Score=37.20  Aligned_cols=73  Identities=12%  Similarity=0.203  Sum_probs=64.2

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCce--eeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEEE
Q 011491          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYN--IQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEV  385 (484)
Q Consensus       313 ~~htLsilVeN~pGVL~RVtglFsRRGyN--IeSLtVg~te~~~iSRiTIVV~-gde~~ieql~kQL~KLidVi~V  385 (484)
                      ..+.+.+...|.++..+.|..++.++...  -.+++.-++....+..+|+.+. .++++++.|-+.|.+.-.|.-|
T Consensus        15 c~~~~KvIG~~~~~~~~~v~~iv~~~~~~~~~~~i~~k~Ss~GkY~Svtv~v~v~s~eq~~~iY~~L~~~~~Vk~v   90 (91)
T PRK02047         15 SDFPIKVMGKAHPEFADTIFKVVSVHDPEFDLEKIEERPSSGGNYTGLTITVRATSREQLDNIYRALTGHPMVKVV   90 (91)
T ss_pred             CCCeEEEEEeCcHhHHHHHHHHHHHhCCCCccCceEEccCCCCeEEEEEEEEEECCHHHHHHHHHHHhhCCCEEEe
Confidence            35899999999999999999999998555  6678899999999999999987 6888999999999999888543

>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form

Probab=91.63  E-value=0.93  Score=49.23  Aligned_cols=65  Identities=15%  Similarity=0.305  Sum_probs=52.0

Q ss_pred             EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--E-EEEEEeCC-hhHHHHHHHHHhcCc
Q 011491           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--L-FTIVVSGT-ERVLRQVVEQLNKLV  143 (484)
Q Consensus        79 khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~-iTIVV~gd-e~~veQI~kQL~KLi  143 (484)
                      +..|.+.+.|+||.|.+|..+|+.+|+|+..|---|+....  . +=|-+.|. +..++++++.|.+..
T Consensus        16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg~~~~~v~~aL~~Lk~~~   84 (436)
T TIGR01268        16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDEASDRKLEGVIEHLRQKA   84 (436)
T ss_pred             eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEecCccHHHHHHHHHHHHhc
Confidence            56788888999999999999999999999999887765432  2 44445554 477889999998876

The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.

>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=91.53  E-value=0.57  Score=35.94  Aligned_cols=50  Identities=14%  Similarity=0.402  Sum_probs=39.2

Q ss_pred             EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh--hHHHHHHHHH
Q 011491           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE--RVLRQVVEQL  139 (484)
Q Consensus        86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde--~~veQI~kQL  139 (484)
                      ..++||+..+|...|.+.|.|++.++.++    .-+++++..++  +.++.+++.|
T Consensus        10 m~~~~~~~~~if~~l~~~~i~v~~i~t~~----~~is~~v~~~~~~~~~~~l~~~l   61 (62)
T cd04890          10 MNGEVGFLRKIFEILEKHGISVDLIPTSE----NSVTLYLDDSLLPKKLKRLLAEL   61 (62)
T ss_pred             cCcccCHHHHHHHHHHHcCCeEEEEecCC----CEEEEEEehhhhhHHHHHHHHhh
Confidence            34679999999999999999999996422    45888887655  6677777665

This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel

>PLN02317 arogenate dehydratase

Probab=91.42  E-value=1.1  Score=48.03  Aligned_cols=70  Identities=16%  Similarity=0.199  Sum_probs=52.4

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCC---------------CeEEEEEEEeCC--hHHHHHHHHHH
Q 011491          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKE---------------GLSCITTVVPGT--DESIGKLVQLL  376 (484)
Q Consensus       314 ~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~---------------~iSRiTIVV~gd--e~~ieql~kQL  376 (484)
                      +-.|.+.++|+||.|.++..+|+.||+|+..|.--|.-..               .-..+-|=+.|.  +..+.+.++.|
T Consensus       283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~eg~~~d~~~~~aL~~L  362 (382)
T PLN02317        283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFEASMADPRAQNALAHL  362 (382)
T ss_pred             cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEEEcCcCCHHHHHHHHHH
Confidence            4566666799999999999999999999999998876544               223444445554  66788888888


Q ss_pred             hcccceE
Q 011491          377 HKLIDLH  383 (484)
Q Consensus       377 ~KLidVi  383 (484)
                      ++.-.-+
T Consensus       363 ~~~~~~l  369 (382)
T PLN02317        363 QEFATFL  369 (382)
T ss_pred             HHhcCeE
Confidence            8765433

>PRK15385 magnesium transport protein MgtC; Provisional

Probab=91.32  E-value=1.7  Score=43.38  Aligned_cols=74  Identities=12%  Similarity=0.198  Sum_probs=60.4

Q ss_pred             eEEEEEEEEeCchh--HHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEE--eC-ChHHHHHHHHHHhcccceEEEe
Q 011491          313 RSHTLSMLVNNTPG--VLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVV--PG-TDESIGKLVQLLHKLIDLHEVQ  386 (484)
Q Consensus       313 ~~htLsilVeN~pG--VL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV--~g-de~~ieql~kQL~KLidVi~V~  386 (484)
                      ..|++++.+.+.++  ++.++...+...+|.+.++.+.+.++++-..|+..+  .+ ++..+++++.+|.....|.+|.
T Consensus       141 ~~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~~~~~~ei~a~l~~~~~~~~~le~iv~~L~~~pgV~~v~  219 (225)
T PRK15385        141 KRYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELVGHADYRKTRELIISRIGDNDNITAIH  219 (225)
T ss_pred             eEEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecCCCCeEEEEEEEEecCCchhhHHHHHHHHhCCCCeEEEE
Confidence            35788888888664  699999999999999999999877666645555544  43 5778999999999999999886

>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains

Probab=91.29  E-value=0.67  Score=38.00  Aligned_cols=55  Identities=15%  Similarity=0.241  Sum_probs=42.4

Q ss_pred             EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh--h-HHHHHHHHHhcCcc
Q 011491           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE--R-VLRQVVEQLNKLVN  144 (484)
Q Consensus        86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde--~-~veQI~kQL~KLid  144 (484)
                      +...||.+.+|.+.|++.|.|++-++.+.    .-+++++..++  . .++.|.+-|+|+-+
T Consensus        11 m~~~~g~~~~If~~la~~~I~vd~I~~s~----~~isftv~~~~~~~~~l~~l~~el~~~~~   68 (73)
T cd04934          11 KSLSHGFLARIFAILDKYRLSVDLISTSE----VHVSMALHMENAEDTNLDAAVKDLQKLGT   68 (73)
T ss_pred             CccccCHHHHHHHHHHHcCCcEEEEEeCC----CEEEEEEehhhcChHHHHHHHHHHHHheE
Confidence            35679999999999999999999997522    34777776432  3 78889999988443

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro

>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH)

Probab=91.27  E-value=0.68  Score=35.32  Aligned_cols=51  Identities=25%  Similarity=0.448  Sum_probs=39.5

Q ss_pred             eCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhc
Q 011491          322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK  378 (484)
Q Consensus       322 eN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~K  378 (484)
                      .+.||++.||...+++.|+|++.++-+.++    .+++++++.+  ..++.++.|++
T Consensus        12 ~~~~~~~~~i~~~l~~~~I~v~~i~~~~s~----~~is~~v~~~--~~~~~~~~lh~   62 (66)
T cd04922          12 AGTPGVAATFFSALAKANVNIRAIAQGSSE----RNISAVIDED--DATKALRAVHE   62 (66)
T ss_pred             CCCccHHHHHHHHHHHCCCCEEEEEecCcc----cEEEEEEeHH--HHHHHHHHHHH
Confidence            468999999999999999999998776533    6788888843  35555666554

This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa

>PRK06635 aspartate kinase; Reviewed

Probab=91.23  E-value=1.2  Score=46.73  Aligned_cols=121  Identities=17%  Similarity=0.256  Sum_probs=81.1

Q ss_pred             EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcc---cceEEEeccCCchhHHHh
Q 011491          321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKL---IDLHEVQDITHLPFAERE  397 (484)
Q Consensus       321 VeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KL---idVi~V~dlt~~~~V~RE  397 (484)
                      ..|+||+|.||...|.+.|+||+.++.+.+++ +...++++++.  +..++..+.|+++   +.+..+       .+.+.
T Consensus       270 ~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~-~~~~is~~v~~--~~~~~a~~~L~~~~~~~~~~~i-------~~~~~  339 (404)
T PRK06635        270 VPDKPGIAAQIFGALAEANINVDMIVQNVSED-GKTDITFTVPR--DDLEKALELLEEVKDEIGAESV-------TYDDD  339 (404)
T ss_pred             CCCCccHHHHHHHHHHHcCCeEEEEEecCCCC-CceeEEEEEcH--HHHHHHHHHHHHHHHHcCcceE-------EEcCC
Confidence            57899999999999999999999987775432 34567888863  3355666666663   222222       13456


Q ss_pred             hheeEEecC-----ccchHHHHHHHHHcCcEEEEecCCEEEEEEeCCHHHHHHHHHHhc
Q 011491          398 LILIKIAVN-----TAARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLE  451 (484)
Q Consensus       398 L~LIKV~~~-----~~~r~eI~~la~ifrakIVDvs~~si~iE~TG~~~Kidafi~lL~  451 (484)
                      ++++.|...     +..-.++++....++.+|.-++....-+-++=+.+..+..++.|.
T Consensus       340 ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~ss~~~is~vv~~~d~~~a~~~Lh  398 (404)
T PRK06635        340 IAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMISTSEIKISVLIDEKYLELAVRALH  398 (404)
T ss_pred             eEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEEecCCeEEEEEcHHHHHHHHHHHH
Confidence            778887432     222357888888888888888654445555555566666666664

>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form

Probab=91.15  E-value=1.2  Score=48.52  Aligned_cols=67  Identities=12%  Similarity=0.199  Sum_probs=53.7

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEeCC-hHHHHHHHHHHhccc
Q 011491          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPGT-DESIGKLVQLLHKLI  380 (484)
Q Consensus       314 ~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~-~~iSRiTIVV~gd-e~~ieql~kQL~KLi  380 (484)
                      +-+|.+.+.|+||.|.+|..+|+.+|+|+..|.--|+.. ++-..+-|-+.|. +..+.++++.|.+..
T Consensus        16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg~~~~~v~~aL~~Lk~~~   84 (436)
T TIGR01268        16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDEASDRKLEGVIEHLRQKA   84 (436)
T ss_pred             eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEecCccHHHHHHHHHHHHhc
Confidence            567777779999999999999999999999999888643 3333455556665 477899999998876

The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=91.01  E-value=0.24  Score=43.06  Aligned_cols=52  Identities=15%  Similarity=0.303  Sum_probs=44.4

Q ss_pred             ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCC
Q 011491          312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT  365 (484)
Q Consensus       312 ~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd  365 (484)
                      +++..+++.=.|+||+.+.|++++++.|.||.  .++.|--.++-.|-+.|.-+
T Consensus         1 ~~~avITV~GkDr~GIva~is~vLAe~~vNIl--disQtvm~~~ftm~~lV~~~   52 (90)
T COG3830           1 KMRAVITVIGKDRVGIVAAVSRVLAEHGVNIL--DISQTVMDGFFTMIMLVDIS   52 (90)
T ss_pred             CceEEEEEEcCCCCchhHHHHHHHHHcCCcEE--EHHHHHHhhhceeeeEEcCC
Confidence            46889999999999999999999999999996  56666667777777778754

>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2)

Probab=90.98  E-value=0.7  Score=35.14  Aligned_cols=53  Identities=28%  Similarity=0.401  Sum_probs=40.2

Q ss_pred             eCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhccc
Q 011491          322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLI  380 (484)
Q Consensus       322 eN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLi  380 (484)
                      .+.||++.++...+++.|.|++-++.+.++    -+++++++.  ...+++.+-|++..
T Consensus        12 ~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~----~~isf~i~~--~~~~~~~~~Lh~~~   64 (66)
T cd04924          12 RGTPGVAGRVFGALGKAGINVIMISQGSSE----YNISFVVAE--DDGWAAVKAVHDEF   64 (66)
T ss_pred             CCCccHHHHHHHHHHHCCCCEEEEEecCcc----ceEEEEEeH--HHHHHHHHHHHHHh
Confidence            467999999999999999999998876643    567788874  33566666666543

Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>PLN02550 threonine dehydratase

Probab=90.94  E-value=3.7  Score=46.32  Aligned_cols=135  Identities=10%  Similarity=0.170  Sum_probs=95.2

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEEEeccCCc
Q 011491          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEVQDITHL  391 (484)
Q Consensus       313 ~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gde~~ieql~kQL~KLidVi~V~dlt~~  391 (484)
                      +++.+.+.+.++||-|.+++.++..+  ||..+.-.. ...+-.++.+.+. -+.+.+++|+..|++.=  .++.|+++.
T Consensus       416 r~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~-~~~~~~~v~v~ie~~~~~~~~~i~~~l~~~g--~~~~~l~~~  490 (591)
T PLN02550        416 QEAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRY-SSEKEALVLYSVGVHTEQELQALKKRMESAQ--LRTVNLTSN  490 (591)
T ss_pred             CEEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEe-cCCCceEEEEEEEeCCHHHHHHHHHHHHHCC--CCeEeCCCC
Confidence            46889999999999999999999987  999888776 3445567777776 36678999999998853  578889887


Q ss_pred             hhHHH-------hh------heeEEecCccchHHHHHHHHHcCcE--EEEe----cC-----CEEEEEEeCCHHHHHHHH
Q 011491          392 PFAER-------EL------ILIKIAVNTAARRDVLDIAKIFRAR--AVDV----SD-----HTITLELTGDLNKIIALQ  447 (484)
Q Consensus       392 ~~V~R-------EL------~LIKV~~~~~~r~eI~~la~ifrak--IVDv----s~-----~si~iE~TG~~~Kidafi  447 (484)
                      +...-       |-      +|+.|..+ +....+.+.++.++.+  |-..    +.     =.+-||+.  .++++.|+
T Consensus       491 ~~~~~~LR~v~g~ra~~~~E~l~~v~fP-ErpGAl~~Fl~~lg~~~nITeF~YR~~~~~~a~vlvGi~v~--~~e~~~l~  567 (591)
T PLN02550        491 DLVKDHLRYLMGGRAIVKDELLYRFVFP-ERPGALMKFLDAFSPRWNISLFHYRGQGETGANVLVGIQVP--PEEMQEFK  567 (591)
T ss_pred             hHHhhhhhheeccccccCceEEEEEEec-CcCCHHHHHHHhhCCCCceeeEEeecCCCCCccEEEEEeeC--HHHHHHHH
Confidence            66422       11      25556543 3345677777777662  2211    00     12347775  48888999


Q ss_pred             HHhccCCc
Q 011491          448 RLLEPYGI  455 (484)
Q Consensus       448 ~lL~pyGI  455 (484)
                      +.|+..|.
T Consensus       568 ~~l~~~gy  575 (591)
T PLN02550        568 SRANALGY  575 (591)
T ss_pred             HHHHHcCC
Confidence            99988774

>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1)

Probab=90.91  E-value=0.62  Score=39.01  Aligned_cols=40  Identities=15%  Similarity=0.222  Sum_probs=33.3

Q ss_pred             EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh
Q 011491          321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD  366 (484)
Q Consensus       321 VeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde  366 (484)
                      ..+.||++.+|...|++.|+||+-++.++      ..++++++.++
T Consensus        11 ~~~~~g~~a~IF~~La~~~InVDmI~qs~------~sISftV~~sd   50 (78)
T cd04933          11 MLGQYGFLAKVFSIFETLGISVDVVATSE------VSISLTLDPSK   50 (78)
T ss_pred             CCCccCHHHHHHHHHHHcCCcEEEEEecC------CEEEEEEEhhh
Confidence            46789999999999999999999996422      66899998654

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08210 aspartate kinase I; Reviewed

Probab=90.78  E-value=3.8  Score=43.13  Aligned_cols=120  Identities=15%  Similarity=0.140  Sum_probs=78.2

Q ss_pred             EEEEEEEcCc-hhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhcCcceeEEEecCCchhhh
Q 011491           80 HTISVFVGDE-SGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVE  158 (484)
Q Consensus        80 htISilVeN~-pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~KLidVikV~dlt~~~~V~  158 (484)
                      ..|++.-.|. ||.++||.+.|.+.|+||+.++....    -+++++..  ..++++.+.|+++-         ..-.+.
T Consensus       272 ~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~~----~is~~v~~--~~~~~a~~~l~~~~---------~~v~~~  336 (403)
T PRK08210        272 TQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFPT----EVVFTVSD--EDSEKAKEILENLG---------LKPSVR  336 (403)
T ss_pred             EEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecCc----eEEEEEcH--HHHHHHHHHHHHhC---------CcEEEe
Confidence            3555555555 99999999999999999999977621    35566653  33556656565531         022356


Q ss_pred             hhheeEEEeCCC-----CCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhc
Q 011491          159 RELMLIKLNGDT-----STWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLS  214 (484)
Q Consensus       159 RELaLiKV~~~~-----~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~  214 (484)
                      +.+++|.|-...     ..-..+++.....+.+|+..+....-+-+.=+.+..+..++.|.
T Consensus       337 ~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~~~~s~~~is~vv~~~~~~~a~~~Lh  397 (403)
T PRK08210        337 ENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQSADSHTTIWVLVKEEDMEKAVNALH  397 (403)
T ss_pred             CCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEEEecCCCEEEEEEcHHHHHHHHHHHH
Confidence            778888886543     33446777777788888876655444444445555666666654

>PRK03381 PII uridylyl-transferase; Provisional

Probab=90.73  E-value=0.66  Score=53.33  Aligned_cols=64  Identities=19%  Similarity=0.339  Sum_probs=47.0

Q ss_pred             EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC---ChHHHHHHHHHHhccc
Q 011491          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG---TDESIGKLVQLLHKLI  380 (484)
Q Consensus       315 htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~g---de~~ieql~kQL~KLi  380 (484)
                      -.+.|+..|+||++++|+++|++.|+||.+-.+-.  ..|..=.++.|.+   .....+++.+.|++.+
T Consensus       600 ~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t--~dg~~ld~F~V~~~~~~~~~~~~l~~~L~~~L  666 (774)
T PRK03381        600 VEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRS--HDGVAVLEFVVSPRFGSPPDAALLRQDLRRAL  666 (774)
T ss_pred             EEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEe--cCCEEEEEEEEECCCCCcchHHHHHHHHHHHH
Confidence            47899999999999999999999999999988864  4455555555553   2122456666666543

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=90.72  E-value=0.77  Score=53.08  Aligned_cols=135  Identities=14%  Similarity=0.168  Sum_probs=85.1

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC------ChHHHHHHHHHHhcccceEEEec
Q 011491          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG------TDESIGKLVQLLHKLIDLHEVQD  387 (484)
Q Consensus       314 ~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~g------de~~ieql~kQL~KLidVi~V~d  387 (484)
                      ...|.|...|+||+|.+|+++|++.|+||.+-.+..|.+.-.--.-.|.+.      +++..++|.+.|.+.++=.    
T Consensus       668 ~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i~~~L~~~L~~~----  743 (850)
T TIGR01693       668 GTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELLQGLVDVLAGL----  743 (850)
T ss_pred             eEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHHHHHHHHHHcCC----
Confidence            357999999999999999999999999999999988876644444444332      1234666666665554210    


Q ss_pred             cCCchhHHHhhheeEEecCccchHHHHHHHHHcCc-EEEEe----cCCEEEEEEeCC--HHHHHHHHHHhccCCc-EEEe
Q 011491          388 ITHLPFAERELILIKIAVNTAARRDVLDIAKIFRA-RAVDV----SDHTITLELTGD--LNKIIALQRLLEPYGI-CEVA  459 (484)
Q Consensus       388 lt~~~~V~REL~LIKV~~~~~~r~eI~~la~ifra-kIVDv----s~~si~iE~TG~--~~Kidafi~lL~pyGI-lEva  459 (484)
                      ....+      .+.+-...  .|    + ...|.- .-|.+    +++..++|++|.  +.=+-.+.+.|..+|+ ++.+
T Consensus       744 ~~~~~------~~~~~~~~--~~----~-~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a  810 (850)
T TIGR01693       744 AKDPD------TISARRAR--RR----R-LQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSA  810 (850)
T ss_pred             Ccccc------ccccccCC--cc----c-ccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEE
Confidence            00000      01110000  01    0 012221 11222    456788888876  7888999999999997 7888


Q ss_pred             ecceeE
Q 011491          460 RTGRVA  465 (484)
Q Consensus       460 RTG~vA  465 (484)
                      ++...+
T Consensus       811 ~i~t~~  816 (850)
T TIGR01693       811 KITTFG  816 (850)
T ss_pred             EEEecC
Confidence            887765

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric

Probab=90.41  E-value=1.2  Score=48.75  Aligned_cols=73  Identities=21%  Similarity=0.231  Sum_probs=58.2

Q ss_pred             ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC--c-E-EEEEEeCChhHHHHHHHHHhcCcceeEEE
Q 011491           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK--A-L-FTIVVSGTERVLRQVVEQLNKLVNVIKVE  149 (484)
Q Consensus        77 ~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~--~-~-iTIVV~gde~~veQI~kQL~KLidVikV~  149 (484)
                      ..+-+|.+.+.|+||.|.++..+|+.+|+|+..|---++...  . . +=|-+.|+...++++++.|.+..+.++|.
T Consensus        29 ~~ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~Eg~~~~l~~aL~~Lk~~~~~~~~~  105 (464)
T TIGR01270        29 VQRLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVELFHYGLQEAMDLLKSGLDVHEVS  105 (464)
T ss_pred             CceEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEEcCHHHHHHHHHHHHHhcccceec
Confidence            345567777799999999999999999999999988776433  2 3 44556687788999999999988876664

This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.

>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII

Probab=90.22  E-value=0.88  Score=34.68  Aligned_cols=51  Identities=27%  Similarity=0.354  Sum_probs=38.9

Q ss_pred             eCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhc
Q 011491          322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK  378 (484)
Q Consensus       322 eN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~K  378 (484)
                      .+.||++.|+...+++.|.|++.++.+.++    .+++++++.+  ..++..+.|+|
T Consensus        12 ~~~~~~~~~i~~~L~~~~i~v~~i~~~~s~----~~isf~v~~~--d~~~~~~~lh~   62 (66)
T cd04916          12 KNTVGVSARATAALAKAGINIRMINQGSSE----ISIMIGVHNE--DADKAVKAIYE   62 (66)
T ss_pred             CCCccHHHHHHHHHHHCCCCEEEEEecCcc----cEEEEEEeHH--HHHHHHHHHHH
Confidence            468999999999999999999999876643    5688888843  34555555554

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>PLN02550 threonine dehydratase

Probab=89.95  E-value=5.3  Score=45.04  Aligned_cols=133  Identities=18%  Similarity=0.312  Sum_probs=89.5

Q ss_pred             ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-cEEEEEEe-CChhHHHHHHHHHhcCcceeEEEecCCc
Q 011491           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIVVS-GTERVLRQVVEQLNKLVNVIKVEDISNE  154 (484)
Q Consensus        77 ~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~~iTIVV~-gde~~veQI~kQL~KLidVikV~dlt~~  154 (484)
                      .+++.+.+.+-++||-|.+++.++..+  ||..+.--..... ..+.+.+. -+.+.+++|+..|++.=  .++.|+++.
T Consensus       415 ~r~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~~~~~~~~i~~~l~~~g--~~~~~l~~~  490 (591)
T PLN02550        415 QQEAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEALVLYSVGVHTEQELQALKKRMESAQ--LRTVNLTSN  490 (591)
T ss_pred             CCEEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCceEEEEEEEeCCHHHHHHHHHHHHHCC--CCeEeCCCC
Confidence            356889999999999999999999987  9998887653222 23444443 25678999999998853  688888886


Q ss_pred             hhh--------------hhhheeEEEeCCCCCHHHHHHHHHhcCcE--EEEe----c--C---CEEEEEEeCChhHHHHH
Q 011491          155 PHV--------------ERELMLIKLNGDTSTWPEIMWLVDIFRAK--VVDI----S--E---HALTIEVTGDPGKMVAV  209 (484)
Q Consensus       155 ~~V--------------~RELaLiKV~~~~~~r~eI~~l~~~FrAk--IVDv----s--~---~sl~iE~TG~~~KIdaf  209 (484)
                      +..              .|| +|+.|..+ +......+.++.++.+  |-..    +  .   =.+=||+.  +++++.|
T Consensus       491 ~~~~~~LR~v~g~ra~~~~E-~l~~v~fP-ErpGAl~~Fl~~lg~~~nITeF~YR~~~~~~a~vlvGi~v~--~~e~~~l  566 (591)
T PLN02550        491 DLVKDHLRYLMGGRAIVKDE-LLYRFVFP-ERPGALMKFLDAFSPRWNISLFHYRGQGETGANVLVGIQVP--PEEMQEF  566 (591)
T ss_pred             hHHhhhhhheeccccccCce-EEEEEEec-CcCCHHHHHHHhhCCCCceeeEEeecCCCCCccEEEEEeeC--HHHHHHH
Confidence            654              222 25666554 4555677777777662  2211    0  0   11336765  3777888


Q ss_pred             HHHhccCC
Q 011491          210 QRNLSKFG  217 (484)
Q Consensus       210 i~~L~~fG  217 (484)
                      ++.|+..|
T Consensus       567 ~~~l~~~g  574 (591)
T PLN02550        567 KSRANALG  574 (591)
T ss_pred             HHHHHHcC
Confidence            88887766

>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains

Probab=89.84  E-value=1.9  Score=32.29  Aligned_cols=50  Identities=16%  Similarity=0.328  Sum_probs=37.1

Q ss_pred             EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhc
Q 011491           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK  141 (484)
Q Consensus        86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~K  141 (484)
                      ..+.||++.|+.+.+++.|.|++.++..    +..+++++..  ...+++.+-|+|
T Consensus        10 ~~~~~~~~~~i~~~L~~~~i~v~~i~~s----~~~is~~v~~--~d~~~~~~~l~~   59 (63)
T cd04936          10 MRSHPGVAAKMFEALAEAGINIEMISTS----EIKISCLIDE--DDAEKAVRALHE   59 (63)
T ss_pred             CCCCccHHHHHHHHHHHCCCcEEEEEcc----CceEEEEEeH--HHHHHHHHHHHH
Confidence            4577999999999999999999999832    2457888864  334455555554

This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu

>PRK05007 PII uridylyl-transferase; Provisional

Probab=89.83  E-value=1  Score=52.54  Aligned_cols=66  Identities=9%  Similarity=0.128  Sum_probs=49.3

Q ss_pred             EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC-----ChHHHHHHHHHHhccc
Q 011491          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG-----TDESIGKLVQLLHKLI  380 (484)
Q Consensus       315 htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~g-----de~~ieql~kQL~KLi  380 (484)
                      -.+.|...|+||+|.+|+++|++.|+||.+-.+..+.+.-.--.-.|.+.     +++..++|.+.|.+.+
T Consensus       702 t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~~~~~~~I~~~L~~aL  772 (884)
T PRK05007        702 TEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLSQDRHQVIRKALEQAL  772 (884)
T ss_pred             EEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCCHHHHHHHHHHHHHHH
Confidence            48899999999999999999999999999998887766444343444332     2345566777776654

>PLN02317 arogenate dehydratase

Probab=89.65  E-value=1.6  Score=46.63  Aligned_cols=67  Identities=13%  Similarity=0.298  Sum_probs=50.1

Q ss_pred             EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC----------------cE-EEEEEeCC--hhHHHHHHHHH
Q 011491           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK----------------AL-FTIVVSGT--ERVLRQVVEQL  139 (484)
Q Consensus        79 khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~----------------~~-iTIVV~gd--e~~veQI~kQL  139 (484)
                      +..|.+.++|+||.|.++...|+.||+|+..|---|....                .+ +-|-+.|.  +..+++.++.|
T Consensus       283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~eg~~~d~~~~~aL~~L  362 (382)
T PLN02317        283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFEASMADPRAQNALAHL  362 (382)
T ss_pred             cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEEEcCcCCHHHHHHHHHH
Confidence            5677777799999999999999999999999987775433                12 33334443  66688888888


Q ss_pred             hcCcce
Q 011491          140 NKLVNV  145 (484)
Q Consensus       140 ~KLidV  145 (484)
                      .+.-.-
T Consensus       363 ~~~~~~  368 (382)
T PLN02317        363 QEFATF  368 (382)
T ss_pred             HHhcCe
Confidence            775543

>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]

Probab=89.04  E-value=6.2  Score=42.98  Aligned_cols=124  Identities=20%  Similarity=0.297  Sum_probs=88.3

Q ss_pred             EEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh--hHHHHHHHHHhcCcceeEEEecCCchhh
Q 011491           80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE--RVLRQVVEQLNKLVNVIKVEDISNEPHV  157 (484)
Q Consensus        80 htISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde--~~veQI~kQL~KLidVikV~dlt~~~~V  157 (484)
                      +.-.....+++|++.||.+.+++.|+|++-+..+.++..  +++++..++  ...+.+.+....+..  .+       .+
T Consensus       311 ~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~~~~~~~a~~~l~~~~~~~~~--~v-------~~  379 (447)
T COG0527         311 TVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVPESDAPRALRALLEEKLELLA--EV-------EV  379 (447)
T ss_pred             EEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEchhhHHHHHHHHHHHHhhhcc--eE-------Ee
Confidence            444445556679999999999999999999988776655  888887544  223333333332332  22       25


Q ss_pred             hhhheeEEEeCCC-----CCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhc
Q 011491          158 ERELMLIKLNGDT-----STWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLS  214 (484)
Q Consensus       158 ~RELaLiKV~~~~-----~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~  214 (484)
                      ++.+++|-+--..     .--.++++-...++-+|.-++...+.|-+.=+.+..+..++.|.
T Consensus       380 ~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~issSe~~Is~vV~~~~~~~av~~LH  441 (447)
T COG0527         380 EEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMISSSEISISFVVDEKDAEKAVRALH  441 (447)
T ss_pred             eCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEEcCCceEEEEEccHHHHHHHHHHH
Confidence            6778888875433     34558899899999999999977788888778888887777765

>PRK08210 aspartate kinase I; Reviewed

Probab=88.59  E-value=3.2  Score=43.73  Aligned_cols=119  Identities=11%  Similarity=0.102  Sum_probs=76.1

Q ss_pred             EEEEEEeCc-hhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEeccCCchhH
Q 011491          316 TLSMLVNNT-PGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFA  394 (484)
Q Consensus       316 tLsilVeN~-pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dlt~~~~V  394 (484)
                      .+++.-.|. ||.++||.+.|.+.|+||+.++.+..      .+++++..  +..+++.+.|+++-       +  .-.+
T Consensus       273 ~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~~------~is~~v~~--~~~~~a~~~l~~~~-------~--~v~~  335 (403)
T PRK08210        273 QIKVKAKENAYDLQQEVFKALAEAGISVDFINIFPT------EVVFTVSD--EDSEKAKEILENLG-------L--KPSV  335 (403)
T ss_pred             EEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecCc------eEEEEEcH--HHHHHHHHHHHHhC-------C--cEEE
Confidence            455554444 99999999999999999999977631      36677763  33566666666531       0  2234


Q ss_pred             HHhhheeEEecCc-----cchHHHHHHHHHcCcEEEEecCCEEEEEEeCCHHHHHHHHHHhc
Q 011491          395 ERELILIKIAVNT-----AARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLE  451 (484)
Q Consensus       395 ~REL~LIKV~~~~-----~~r~eI~~la~ifrakIVDvs~~si~iE~TG~~~Kidafi~lL~  451 (484)
                      .+.+++|.|--..     ..-..+++.....+-+|+..+....-+-+.=+.+..+..++.|.
T Consensus       336 ~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~~~~s~~~is~vv~~~~~~~a~~~Lh  397 (403)
T PRK08210        336 RENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQSADSHTTIWVLVKEEDMEKAVNALH  397 (403)
T ss_pred             eCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEEEecCCCEEEEEEcHHHHHHHHHHHH
Confidence            5678888776432     22346777777778888876654444444445555555555554

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=88.57  E-value=1.2  Score=51.69  Aligned_cols=127  Identities=11%  Similarity=0.096  Sum_probs=78.7

Q ss_pred             EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC-----ChHHHHHHHHHHhcccceEEEeccC
Q 011491          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG-----TDESIGKLVQLLHKLIDLHEVQDIT  389 (484)
Q Consensus       315 htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~g-----de~~ieql~kQL~KLidVi~V~dlt  389 (484)
                      -.+.|...|+||+|.+|+++|++.|+||.+=.+..+.+.-.--.-.|.+.     +++.+++|.+.|.+.++-..     
T Consensus       678 t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~~~~~~~l~~~L~~aL~~~~-----  752 (854)
T PRK01759        678 TEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLEFDRRRQLEQALTKALNTNK-----  752 (854)
T ss_pred             EEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHcCCC-----
Confidence            48899999999999999999999999999988877655544443334332     23456677777776654211     


Q ss_pred             CchhHHHhhheeEEecCccchHHHHHHHHHcC--cEEE---EecCCEEEEEEeCC--HHHHHHHHHHhccCCc-EEEeec
Q 011491          390 HLPFAERELILIKIAVNTAARRDVLDIAKIFR--ARAV---DVSDHTITLELTGD--LNKIIALQRLLEPYGI-CEVART  461 (484)
Q Consensus       390 ~~~~V~REL~LIKV~~~~~~r~eI~~la~ifr--akIV---Dvs~~si~iE~TG~--~~Kidafi~lL~pyGI-lEvaRT  461 (484)
                        ....+   + +  .+.  +      ...|.  .+|.   +.++++.+||+...  +.=+-.+-..|..+|+ +..||=
T Consensus       753 --~~~~~---~-~--~~~--~------~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI  816 (854)
T PRK01759        753 --LKKLN---L-E--ENH--K------LQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKI  816 (854)
T ss_pred             --Ccchh---c-c--ccc--c------ccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEE
Confidence              00000   0 1  010  0      01121  1221   24567788888765  6677777788888886 666664


Q ss_pred             c
Q 011491          462 G  462 (484)
Q Consensus       462 G  462 (484)
                      .
T Consensus       817 ~  817 (854)
T PRK01759        817 T  817 (854)
T ss_pred             c
Confidence            3

>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1)

Probab=88.39  E-value=1.5  Score=36.80  Aligned_cols=40  Identities=10%  Similarity=0.326  Sum_probs=32.2

Q ss_pred             EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh
Q 011491           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE  129 (484)
Q Consensus        86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde  129 (484)
                      ..+.||++.+|-..|++.|+||+-++.++    .-+++++..++
T Consensus        11 ~~~~~g~~a~IF~~La~~~InVDmI~qs~----~sISftV~~sd   50 (78)
T cd04933          11 MLGQYGFLAKVFSIFETLGISVDVVATSE----VSISLTLDPSK   50 (78)
T ss_pred             CCCccCHHHHHHHHHHHcCCcEEEEEecC----CEEEEEEEhhh
Confidence            46789999999999999999999997522    34777777544

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=88.36  E-value=1.1  Score=33.02  Aligned_cols=53  Identities=30%  Similarity=0.444  Sum_probs=39.7

Q ss_pred             EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcc
Q 011491          321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKL  379 (484)
Q Consensus       321 VeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KL  379 (484)
                      ..+++|++.++...|++.|.|+..++.+..+    .+++++++.  ...+.+.+.|+|.
T Consensus        10 ~~~~~~~~~~i~~~l~~~~i~v~~i~~~~~~----~~i~~~v~~--~~~~~~~~~l~~~   62 (65)
T cd04892          10 MRGTPGVAARIFSALAEAGINIIMISQGSSE----VNISFVVDE--DDADKAVKALHEE   62 (65)
T ss_pred             CCCCccHHHHHHHHHHHCCCcEEEEEcCCCc----eeEEEEEeH--HHHHHHHHHHHHH
Confidence            3478999999999999999999988775522    557777774  3456666666654

This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=88.26  E-value=1.4  Score=51.54  Aligned_cols=66  Identities=8%  Similarity=0.241  Sum_probs=48.5

Q ss_pred             eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEe---C----ChhHHHHHHHHHhcCc
Q 011491           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVS---G----TERVLRQVVEQLNKLV  143 (484)
Q Consensus        78 ~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~---g----de~~veQI~kQL~KLi  143 (484)
                      ....|.|...|+||+|.+|+++|++.|.||.+-.+..+.+.-.=++.|.   |    ++...++|.+.|.+.+
T Consensus       813 ~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L  885 (895)
T PRK00275        813 PVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQL  885 (895)
T ss_pred             CeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHH
Confidence            3468999999999999999999999999999999987733222233332   2    2345677777776544

>TIGR00657 asp_kinases aspartate kinase

Probab=87.64  E-value=3  Score=44.56  Aligned_cols=115  Identities=21%  Similarity=0.260  Sum_probs=76.0

Q ss_pred             hhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhc---CcceeEEEecCCchhhhhhheeEEE
Q 011491           90 SGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK---LVNVIKVEDISNEPHVERELMLIKL  166 (484)
Q Consensus        90 pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~K---LidVikV~dlt~~~~V~RELaLiKV  166 (484)
                      ||++.||...|++.|+||+.++.+.++  .-++++++.++  .+...+.|.+   ...+-.+.       +.+.+++|.|
T Consensus       315 ~g~la~if~~L~~~~I~I~~i~q~~se--~sIs~~I~~~~--~~~a~~~L~~~~~~~~~~~I~-------~~~~~a~Vsv  383 (441)
T TIGR00657       315 PGFLARVFGALAEAGINVDLITQSSSE--TSISFTVDKED--ADQAKTLLKSELNLSALSSVE-------VEKGLAKVSL  383 (441)
T ss_pred             ccHHHHHHHHHHHcCCeEEEEEecCCC--ceEEEEEEHHH--HHHHHHHHHHHHHhcCcceEE-------EcCCeEEEEE
Confidence            899999999999999999999744332  23777776433  4444444443   22332222       4677889988


Q ss_pred             eCC-----CCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 011491          167 NGD-----TSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK  215 (484)
Q Consensus       167 ~~~-----~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~  215 (484)
                      ...     +.--.++++.....+-+|.-++....-+-++=+.+..+..++.|..
T Consensus       384 vG~~~~~~~g~~a~if~~La~~~Inv~~i~~se~~Is~vV~~~d~~~a~~~Lh~  437 (441)
T TIGR00657       384 VGAGMKSAPGVASKIFEALAQNGINIEMISSSEINISFVVDEKDAEKAVRLLHN  437 (441)
T ss_pred             EcCCCCCCCchHHHHHHHHHHCCCCEEEEEecCCcEEEEEeHHHHHHHHHHHHH
Confidence            432     3445588888888888888775444555555556666666776653

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.

>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI

Probab=87.61  E-value=1.4  Score=35.33  Aligned_cols=39  Identities=18%  Similarity=0.267  Sum_probs=31.5

Q ss_pred             EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCC
Q 011491          321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT  365 (484)
Q Consensus       321 VeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd  365 (484)
                      ..|.||++.+|.+.++++|.||+-++.. .+     .++++++.+
T Consensus         9 ~~~~~~~~a~if~~La~~~InvDmI~~~-~~-----~isFtv~~~   47 (67)
T cd04914           9 KDNENDLQQRVFKALANAGISVDLINVS-PE-----EVIFTVDGE   47 (67)
T ss_pred             CCCCccHHHHHHHHHHHcCCcEEEEEec-CC-----CEEEEEchh
Confidence            3578999999999999999999999554 22     378888743

This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and

>PRK08639 threonine dehydratase; Validated

Probab=87.54  E-value=3.9  Score=43.62  Aligned_cols=82  Identities=12%  Similarity=0.062  Sum_probs=61.5

Q ss_pred             ceEEEEEEEEeCchhHHHHHHH-HHhccCceeeeeeeeecCCCCeEEEEEEEeC-ChHHHHHHHHHHhcccceEEEeccC
Q 011491          312 LRSHTLSMLVNNTPGVLNIVTG-VISRRGYNIQSLAVGPAEKEGLSCITTVVPG-TDESIGKLVQLLHKLIDLHEVQDIT  389 (484)
Q Consensus       312 ~~~htLsilVeN~pGVL~RVtg-lFsRRGyNIeSLtVg~te~~~iSRiTIVV~g-de~~ieql~kQL~KLidVi~V~dlt  389 (484)
                      -+...+++...++||-|.++.. +++.++ ||..+.-......+..++.+++.. +.+.++++..+|++.=  .++++++
T Consensus       334 ~r~~~~~v~ipdrPGaL~~~l~~i~~~~~-NI~~~~~~~~~~~~~~~v~v~iE~~~~~h~~~i~~~L~~~G--y~~~~~~  410 (420)
T PRK08639        334 GLKHYFIVNFPQRPGALREFLDDVLGPND-DITRFEYLKKNNRETGPVLVGIELKDAEDYDGLIERMEAFG--PSYIDIN  410 (420)
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHhcCCC-cEEEEEEeecCCCCceEEEEEEEeCCHHHHHHHHHHHHHCC--CceEECC
Confidence            3568999999999999999999 555555 999886654445556678888774 4468899999998864  4566777


Q ss_pred             CchhHHH
Q 011491          390 HLPFAER  396 (484)
Q Consensus       390 ~~~~V~R  396 (484)
                      +.+.+..
T Consensus       411 ~~~~~~~  417 (420)
T PRK08639        411 PNEPLYN  417 (420)
T ss_pred             CCHHHHH
Confidence            7776654

>PRK15385 magnesium transport protein MgtC; Provisional

Probab=87.48  E-value=4.7  Score=40.39  Aligned_cols=73  Identities=10%  Similarity=0.140  Sum_probs=58.7

Q ss_pred             ceEEEEEEEEcCchh--HHHHHHHHHhccCceeeeEeeeecCCCc--EEEE--EEeC-ChhHHHHHHHHHhcCcceeEEE
Q 011491           77 VKRHTISVFVGDESG--IINRIAGVFARRGYNIESLAVGLNVDKA--LFTI--VVSG-TERVLRQVVEQLNKLVNVIKVE  149 (484)
Q Consensus        77 ~~khtISilVeN~pG--VL~RIagLFsRRGyNIeSLtVg~Ted~~--~iTI--VV~g-de~~veQI~kQL~KLidVikV~  149 (484)
                      ...|.+++.+.++++  +..++...+...+|.+.++.+.+.++++  .++.  ...+ ++..+++++.+|...-.|.+|.
T Consensus       140 ~~~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~~~~~~ei~a~l~~~~~~~~~le~iv~~L~~~pgV~~v~  219 (225)
T PRK15385        140 EKRYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELVGHADYRKTRELIISRIGDNDNITAIH  219 (225)
T ss_pred             ceEEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecCCCCeEEEEEEEEecCCchhhHHHHHHHHhCCCCeEEEE
Confidence            346788988888664  6999999999999999999998765554  3444  4443 5788999999999999999886

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=87.48  E-value=0.63  Score=40.57  Aligned_cols=46  Identities=30%  Similarity=0.485  Sum_probs=38.3

Q ss_pred             ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEE
Q 011491           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIV  124 (484)
Q Consensus        77 ~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIV  124 (484)
                      +++..|++.=.||||+.+.|++++++.|.||..+  +.|--.+++|+.
T Consensus         1 ~~~avITV~GkDr~GIva~is~vLAe~~vNIldi--sQtvm~~~ftm~   46 (90)
T COG3830           1 KMRAVITVIGKDRVGIVAAVSRVLAEHGVNILDI--SQTVMDGFFTMI   46 (90)
T ss_pred             CceEEEEEEcCCCCchhHHHHHHHHHcCCcEEEH--HHHHHhhhceee
Confidence            4788999999999999999999999999999754  466556665554

>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3

Probab=87.40  E-value=1.7  Score=33.39  Aligned_cols=51  Identities=18%  Similarity=0.270  Sum_probs=37.8

Q ss_pred             cCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhc
Q 011491           87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK  141 (484)
Q Consensus        87 eN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~K  141 (484)
                      .++||++.|+...+++.|.|++.++.+..+  ..+.+++..++  .+.+++.|+|
T Consensus        12 ~~~~~~~~~if~~L~~~~I~v~~i~q~~s~--~~isf~v~~~~--~~~a~~~lh~   62 (66)
T cd04919          12 KNMIGIAGRMFTTLADHRINIEMISQGASE--INISCVIDEKD--AVKALNIIHT   62 (66)
T ss_pred             CCCcCHHHHHHHHHHHCCCCEEEEEecCcc--ceEEEEEeHHH--HHHHHHHHHH
Confidence            468999999999999999999999876633  45777887533  4444555544

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2)

Probab=87.35  E-value=2  Score=32.60  Aligned_cols=53  Identities=17%  Similarity=0.272  Sum_probs=38.3

Q ss_pred             EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhcC
Q 011491           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKL  142 (484)
Q Consensus        86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~KL  142 (484)
                      ..+.||++.++...+++.|.|++-++.+..+  ..+++++..  ...+++.+.|++.
T Consensus        11 ~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~--~~isf~i~~--~~~~~~~~~Lh~~   63 (66)
T cd04924          11 MRGTPGVAGRVFGALGKAGINVIMISQGSSE--YNISFVVAE--DDGWAAVKAVHDE   63 (66)
T ss_pred             CCCCccHHHHHHHHHHHCCCCEEEEEecCcc--ceEEEEEeH--HHHHHHHHHHHHH
Confidence            3467999999999999999999999876533  447777764  3345555555443

Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B

Probab=87.29  E-value=1.5  Score=38.93  Aligned_cols=65  Identities=18%  Similarity=0.388  Sum_probs=52.8

Q ss_pred             CchhHHHHHHHHHhccCceeeeEeeeecCCCc-E----EEEEEeCChhHHHHHHHHHhcCcceeEEEecC
Q 011491           88 DESGIINRIAGVFARRGYNIESLAVGLNVDKA-L----FTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS  152 (484)
Q Consensus        88 N~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~-~----iTIVV~gde~~veQI~kQL~KLidVikV~dlt  152 (484)
                      +-|.+|..|..+-...|..+.+++.++....+ .    ++|.+.|+=..+-+.+++|+++-.++.|++++
T Consensus        51 ~~~~ll~~l~~~A~~~gv~l~~~~p~~~~~~~~~~~~pv~i~l~G~Y~~l~~Fl~~l~~l~riv~i~~~~  120 (144)
T PF04350_consen   51 EIPSLLEDLNRLAKKSGVKLTSFEPGEEEKKEFYIEIPVTISLEGSYHQLLNFLNDLENLPRIVNIENLS  120 (144)
T ss_dssp             HHHHHHHHHHHHHHHTT-EEEEEEE---EE-SSEEEEEEEEEEEEEHHHHHHHHHHHHTSSS-EEEEEEE
T ss_pred             hHHHHHHHHHHHHHHCCCeEEEeecCcccccCceEEEEEEEEEEeeHHHHHHHHHHHHcCCCeEEEeeeE
Confidence            45889999999999999999999998654443 2    78899999999999999999999999999876

>PRK08526 threonine dehydratase; Provisional

Probab=87.28  E-value=2.7  Score=44.81  Aligned_cols=67  Identities=18%  Similarity=0.247  Sum_probs=55.5

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecC---CCCeEEEEEEEe-CChHHHHHHHHHHhcc
Q 011491          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE---KEGLSCITTVVP-GTDESIGKLVQLLHKL  379 (484)
Q Consensus       313 ~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te---~~~iSRiTIVV~-gde~~ieql~kQL~KL  379 (484)
                      +.+.+.+.+.|+||-|.+++.++++.|-||..+.-....   ..+-.++++++. -+.+.+++|...|++.
T Consensus       325 r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~~  395 (403)
T PRK08526        325 RKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETKGKEHQEEIRKILTEK  395 (403)
T ss_pred             CEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence            568999999999999999999999999999998875533   336788888877 3567899999988653

>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII

Probab=87.15  E-value=2.3  Score=32.37  Aligned_cols=52  Identities=19%  Similarity=0.319  Sum_probs=37.6

Q ss_pred             EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhc
Q 011491           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK  141 (484)
Q Consensus        86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~K  141 (484)
                      +.+.||++.|+...+++.|.|++.++.+.++  ..+++++..++  .+...+.|+|
T Consensus        11 ~~~~~~~~~~i~~~L~~~~i~v~~i~~~~s~--~~isf~v~~~d--~~~~~~~lh~   62 (66)
T cd04916          11 MKNTVGVSARATAALAKAGINIRMINQGSSE--ISIMIGVHNED--ADKAVKAIYE   62 (66)
T ss_pred             CCCCccHHHHHHHHHHHCCCCEEEEEecCcc--cEEEEEEeHHH--HHHHHHHHHH
Confidence            4568999999999999999999999876532  45778887533  3444444443

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=87.00  E-value=1.4  Score=35.07  Aligned_cols=46  Identities=30%  Similarity=0.498  Sum_probs=34.9

Q ss_pred             CchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHh
Q 011491          323 NTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLH  377 (484)
Q Consensus       323 N~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~  377 (484)
                      |.||++.|++..++.-|+||.-++   |+    .++.+.|+.  +.+++.++-|+
T Consensus        19 ~~~Gv~a~i~~~La~~~I~i~~is---S~----~~~~ilV~~--~~~~~A~~~L~   64 (65)
T PF13840_consen   19 DVPGVAAKIFSALAEAGINIFMIS---SE----ISISILVKE--EDLEKAVEALH   64 (65)
T ss_dssp             TSHHHHHHHHHHHHHTTS-ECEEE---ES----SEEEEEEEG--GGHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHCCCCEEEEE---Ee----eeEEEEEeH--HHHHHHHHHhc
Confidence            599999999999999999998777   33    457788873  35666666655

>PRK00907 hypothetical protein; Provisional

Probab=86.87  E-value=4.7  Score=35.13  Aligned_cols=72  Identities=10%  Similarity=0.070  Sum_probs=63.4

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCc--eeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEE
Q 011491          313 RSHTLSMLVNNTPGVLNIVTGVISRRGY--NIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHE  384 (484)
Q Consensus       313 ~~htLsilVeN~pGVL~RVtglFsRRGy--NIeSLtVg~te~~~iSRiTIVV~-gde~~ieql~kQL~KLidVi~  384 (484)
                      ..+.|.|.-.+++++...|..++.+.+-  +-.++++-++....+..+|+++. .+.++++.|-+.|.+.-.|.-
T Consensus        16 c~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~ats~eQld~iY~~L~~~~~Vkm   90 (92)
T PRK00907         16 GTFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAESREQYDAAHQALRDHPEVKW   90 (92)
T ss_pred             CCCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEECCHHHHHHHHHHHhhCCCEEE
Confidence            3589999999999999999999998754  56788889999999999999987 577899999999999888853

>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=86.78  E-value=1.8  Score=31.92  Aligned_cols=53  Identities=23%  Similarity=0.324  Sum_probs=37.7

Q ss_pred             EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhcC
Q 011491           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKL  142 (484)
Q Consensus        86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~KL  142 (484)
                      ..+++|++.++...|++.|.|+..++.+..  ...++++++.  ...+.+.+.|+|.
T Consensus        10 ~~~~~~~~~~i~~~l~~~~i~v~~i~~~~~--~~~i~~~v~~--~~~~~~~~~l~~~   62 (65)
T cd04892          10 MRGTPGVAARIFSALAEAGINIIMISQGSS--EVNISFVVDE--DDADKAVKALHEE   62 (65)
T ss_pred             CCCCccHHHHHHHHHHHCCCcEEEEEcCCC--ceeEEEEEeH--HHHHHHHHHHHHH
Confidence            447899999999999999999998876542  2336667764  3345555555543

This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an

>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]

Probab=86.20  E-value=5.9  Score=43.14  Aligned_cols=123  Identities=18%  Similarity=0.189  Sum_probs=85.4

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh-HHH-HHHHHHHhcccceEEEeccCCchh
Q 011491          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD-ESI-GKLVQLLHKLIDLHEVQDITHLPF  393 (484)
Q Consensus       316 tLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde-~~i-eql~kQL~KLidVi~V~dlt~~~~  393 (484)
                      .-.....+++|++.||.+.+++.|+|++-+..+.++..    |++++++++ ... +.+.+....+..         +-.
T Consensus       312 v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~----i~~~v~~~~~~~a~~~l~~~~~~~~~---------~v~  378 (447)
T COG0527         312 VSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS----ISFTVPESDAPRALRALLEEKLELLA---------EVE  378 (447)
T ss_pred             EEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe----EEEEEchhhHHHHHHHHHHHHhhhcc---------eEE
Confidence            33344456679999999999999999999988877665    899998654 222 222222222222         223


Q ss_pred             HHHhhheeEEecCc-----cchHHHHHHHHHcCcEEEEecCCEEEEEEeCCHHHHHHHHHHhc
Q 011491          394 AERELILIKIAVNT-----AARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLE  451 (484)
Q Consensus       394 V~REL~LIKV~~~~-----~~r~eI~~la~ifrakIVDvs~~si~iE~TG~~~Kidafi~lL~  451 (484)
                      +++.+++|-+--..     .--..+++-...++-+|.-++...+.|-+.=+.+..+..++.|.
T Consensus       379 ~~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~issSe~~Is~vV~~~~~~~av~~LH  441 (447)
T COG0527         379 VEEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMISSSEISISFVVDEKDAEKAVRALH  441 (447)
T ss_pred             eeCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEEcCCceEEEEEccHHHHHHHHHHH
Confidence            45667887764332     22357888888999999999977788887777777777777664

>TIGR02079 THD1 threonine dehydratase

Probab=86.16  E-value=4.9  Score=42.79  Aligned_cols=81  Identities=12%  Similarity=0.105  Sum_probs=62.4

Q ss_pred             eEEEEEEEEeCchhHHHHHHH-HHhccCceeeeeeeeecCCCCeEEEEEEEeC-ChHHHHHHHHHHhcccceEEEeccCC
Q 011491          313 RSHTLSMLVNNTPGVLNIVTG-VISRRGYNIQSLAVGPAEKEGLSCITTVVPG-TDESIGKLVQLLHKLIDLHEVQDITH  390 (484)
Q Consensus       313 ~~htLsilVeN~pGVL~RVtg-lFsRRGyNIeSLtVg~te~~~iSRiTIVV~g-de~~ieql~kQL~KLidVi~V~dlt~  390 (484)
                      +...+++.+.++||-|.+++. +++.++ ||..+.-......+..++.+++.. +.+.+++|.+.|++.=  .++.++++
T Consensus       324 r~~~~~v~ipdrPGaL~~~l~~i~~~~~-NI~~~~y~~~~~~~~~~v~v~iE~~~~~h~~~i~~~L~~~G--y~~~~~~~  400 (409)
T TIGR02079       324 LKHYFIVRFPQRPGALREFLNDVLGPND-DITRFEYTKKSNRETGPALIGIELNDKEDFAGLLERMAAAD--IHYEDINE  400 (409)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHhcCCC-cEEEEEeeecCCCCeEEEEEEEEeCCHHHHHHHHHHHHHCC--CCeEECCC
Confidence            468999999999999999999 555555 999777665555677888888874 4578899999998863  46667887


Q ss_pred             chhHHH
Q 011491          391 LPFAER  396 (484)
Q Consensus       391 ~~~V~R  396 (484)
                      .+.++.
T Consensus       401 ~~~~~~  406 (409)
T TIGR02079       401 NDILYN  406 (409)
T ss_pred             CHHHHH
Confidence            766654

This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.

>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1)

Probab=85.85  E-value=2.4  Score=33.33  Aligned_cols=50  Identities=26%  Similarity=0.353  Sum_probs=39.8

Q ss_pred             CchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhc
Q 011491          323 NTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK  378 (484)
Q Consensus       323 N~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~K  378 (484)
                      +.||++.|+...|++.|+||.-++-|.++.    +++++++.  +..++.++.|++
T Consensus        12 ~~~~~~~~i~~aL~~~~I~v~~i~~g~s~~----sis~~v~~--~~~~~av~~Lh~   61 (65)
T cd04918          12 RSSLILERAFHVLYTKGVNVQMISQGASKV----NISLIVND--SEAEGCVQALHK   61 (65)
T ss_pred             CCccHHHHHHHHHHHCCCCEEEEEecCccc----eEEEEEeH--HHHHHHHHHHHH
Confidence            468999999999999999999999888753    58888884  345666666665

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH)

Probab=85.63  E-value=2.3  Score=32.33  Aligned_cols=52  Identities=13%  Similarity=0.295  Sum_probs=38.0

Q ss_pred             EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhc
Q 011491           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK  141 (484)
Q Consensus        86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~K  141 (484)
                      ..+.||++.||...+++.|+|++.++-+..+  ..+++++..++  .++.++.|++
T Consensus        11 ~~~~~~~~~~i~~~l~~~~I~v~~i~~~~s~--~~is~~v~~~~--~~~~~~~lh~   62 (66)
T cd04922          11 MAGTPGVAATFFSALAKANVNIRAIAQGSSE--RNISAVIDEDD--ATKALRAVHE   62 (66)
T ss_pred             CCCCccHHHHHHHHHHHCCCCEEEEEecCcc--cEEEEEEeHHH--HHHHHHHHHH
Confidence            4578999999999999999999999775532  45888887433  4444555543

This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa

>PRK09034 aspartate kinase; Reviewed

Probab=85.52  E-value=12  Score=40.42  Aligned_cols=116  Identities=11%  Similarity=0.194  Sum_probs=73.8

Q ss_pred             CchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChh--HH-HHHHHHHhcCcceeEEEecCCchhhhhhheeE
Q 011491           88 DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTER--VL-RQVVEQLNKLVNVIKVEDISNEPHVERELMLI  164 (484)
Q Consensus        88 N~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~--~v-eQI~kQL~KLidVikV~dlt~~~~V~RELaLi  164 (484)
                      .+||+++||.+.|++.|.||+-++    ....-++++++.++.  .. ..+...|++-..+..|       .+.+.+++|
T Consensus       320 ~~~g~~a~if~~la~~~I~Vd~i~----ss~~sis~~v~~~~~~~a~~~~l~~el~~~~~~~~I-------~~~~~va~V  388 (454)
T PRK09034        320 REVGFGRKVLQILEDHGISYEHMP----SGIDDLSIIIRERQLTPKKEDEILAEIKQELNPDEL-------EIEHDLAII  388 (454)
T ss_pred             CCccHHHHHHHHHHHcCCeEEEEc----CCCcEEEEEEeHHHhhHHHHHHHHHHHHHhhCCceE-------EEeCCEEEE
Confidence            479999999999999999999983    222347888875432  11 5566666654443333       256779999


Q ss_pred             EEeCC-----CCCHHHHHHHHHhcCcEEEEec--CCEEEEEEeCChhHHHHHHHHhc
Q 011491          165 KLNGD-----TSTWPEIMWLVDIFRAKVVDIS--EHALTIEVTGDPGKMVAVQRNLS  214 (484)
Q Consensus       165 KV~~~-----~~~r~eI~~l~~~FrAkIVDvs--~~sl~iE~TG~~~KIdafi~~L~  214 (484)
                      .+-..     +.--..+++....++.+|.-++  ....-|-++=+.+..+..++.|.
T Consensus       389 sivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~Se~~Is~vV~~~d~~~av~~LH  445 (454)
T PRK09034        389 MVVGEGMRQTVGVAAKITKALAEANINIQMINQGSSEISIMFGVKNEDAEKAVKAIY  445 (454)
T ss_pred             EEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCCcceEEEEEcHHHHHHHHHHHH
Confidence            88432     2344578888888888885553  22234444444455555555554

>PRK04374 PII uridylyl-transferase; Provisional

Probab=85.49  E-value=2.6  Score=49.30  Aligned_cols=65  Identities=18%  Similarity=0.335  Sum_probs=46.0

Q ss_pred             EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe--CC-hHHHHHHHHHHhcc
Q 011491          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP--GT-DESIGKLVQLLHKL  379 (484)
Q Consensus       315 htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~--gd-e~~ieql~kQL~KL  379 (484)
                      ..+.|+..|+||++.+|+|+|++.|+||.+-.+-.+.+.-.--.-.|.+  |. ++..+++.+.|.+.
T Consensus       691 ~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~i~~~l~~~  758 (869)
T PRK04374        691 LEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYADGDPQRLAAALRQV  758 (869)
T ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCChHHHHHHHHHHHHH
Confidence            4789999999999999999999999999998887765544333333333  21 33455555555543

>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins

Probab=85.18  E-value=2.9  Score=33.86  Aligned_cols=56  Identities=23%  Similarity=0.328  Sum_probs=42.5

Q ss_pred             eEEEeCC--CCCHHHHHHHHHhcCcEE------EEe----cCCEEEEEEeCChhHHHHHHHHhccCCc
Q 011491          163 LIKLNGD--TSTWPEIMWLVDIFRAKV------VDI----SEHALTIEVTGDPGKMVAVQRNLSKFGI  218 (484)
Q Consensus       163 LiKV~~~--~~~r~eI~~l~~~FrAkI------VDv----s~~sl~iE~TG~~~KIdafi~~L~~fGI  218 (484)
                      ++|+...  ....+-|-++++.|+..+      ||-    .-..+++|+.|++++++++++.|+..|+
T Consensus         4 l~~l~f~g~~~~~piis~l~~~~~v~~nIl~g~i~~i~~~~~G~l~l~l~g~~~~~~~a~~~L~~~~v   71 (76)
T PF09383_consen    4 LVRLTFTGNSAQEPIISQLIREFGVDVNILHGNIEEIQGTPFGILILELPGDDEEIEKAIAYLREQGV   71 (76)
T ss_dssp             EEEEEEESCSSSSCHHHHHHHHHT-EEEEEEEEEEEETTEEEEEEEEEEES-HHHHHHHHHHHHHTTE
T ss_pred             EEEEEEcCCCcCchHHHHHHHHhCCCEEEEEEEeEEcCCeeEEEEEEEEECCHHHHHHHHHHHHHCCC
Confidence            5666554  456678999999997655      333    4467999999999999999999999984

This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.

>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII

Probab=84.80  E-value=2.4  Score=35.76  Aligned_cols=60  Identities=17%  Similarity=0.351  Sum_probs=47.9

Q ss_pred             EEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCC---hHHHHHHHHHHhcccceEEE
Q 011491          320 LVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT---DESIGKLVQLLHKLIDLHEV  385 (484)
Q Consensus       320 lVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd---e~~ieql~kQL~KLidVi~V  385 (484)
                      +..+..|.+.|+..+|.+.|.++|-+.      .|+-.|+++++.+   ++..++|++.|++-.+.-++
T Consensus        10 ~Mn~evGF~rk~L~I~E~~~is~Eh~P------SGID~~Siii~~~~~~~~~~~~i~~~i~~~~~pD~i   72 (76)
T cd04911          10 LMNREVGFGRKLLSILEDNGISYEHMP------SGIDDISIIIRDNQLTDEKEQKILAEIKEELHPDEI   72 (76)
T ss_pred             hccchhcHHHHHHHHHHHcCCCEeeec------CCCccEEEEEEccccchhhHHHHHHHHHHhcCCCEE
Confidence            357889999999999999999999763      3556699999966   55788889998886655444

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=84.75  E-value=3  Score=48.69  Aligned_cols=64  Identities=16%  Similarity=0.199  Sum_probs=45.1

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe--C---ChHHHHHHHHHHhc
Q 011491          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP--G---TDESIGKLVQLLHK  378 (484)
Q Consensus       314 ~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~--g---de~~ieql~kQL~K  378 (484)
                      ..+|.|.+.|+||+|.+|+.+|.+.|++|.+--++.-.+ ..-.+-.|.+  |   +++..+.|.++|.+
T Consensus       783 ~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~ge-rv~D~Fyv~~~~g~~l~~~~~~~l~~~L~~  851 (854)
T PRK01759        783 QTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGE-KAEDFFILTNQQGQALDEEERKALKSRLLS  851 (854)
T ss_pred             eEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCc-eEEEEEEEECCCCCcCChHHHHHHHHHHHH
Confidence            468999999999999999999999999999977765443 3334444443  2   12333566665543

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=84.59  E-value=2.4  Score=43.72  Aligned_cols=178  Identities=16%  Similarity=0.155  Sum_probs=105.5

Q ss_pred             ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCC-CcE--EEEEEe--CChhHHHHHHHHHhcCcceeEEE--
Q 011491           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD-KAL--FTIVVS--GTERVLRQVVEQLNKLVNVIKVE--  149 (484)
Q Consensus        77 ~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted-~~~--iTIVV~--gde~~veQI~kQL~KLidVikV~--  149 (484)
                      ++.++|.+-..++||..++|++...+.|+||.....- +.. .++  |.+...  +.....+++...+..+.+=....  
T Consensus         5 ~~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf-~D~~~g~FFmR~~f~~~~~~~~~~~l~~~f~~~a~~f~m~~~   83 (287)
T COG0788           5 PDTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQF-DDPETGRFFMRVEFEGEGGPLDREALRAAFAPLAEEFGMDWR   83 (287)
T ss_pred             ccceEEEEecCCCCCcHHHHHHHHHHcCCceeecccc-cccccCeEEEEEEEecCCCcccHHHHHHHHHHHHHhhCceeE
Confidence            4678999999999999999999999999999987765 322 344  555554  33345666666666554411111  


Q ss_pred             ------------ecCCchhhhhhheeEEEeC---------CCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHH
Q 011491          150 ------------DISNEPHVERELMLIKLNG---------DTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVA  208 (484)
Q Consensus       150 ------------dlt~~~~V~RELaLiKV~~---------~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIda  208 (484)
                                  -.+.+.+=-.+| |.|.+.         =-.|-.+...+++.|+----.+.-+.-+     .++.=+.
T Consensus        84 ~~~~~~~~ri~i~VSK~~HCL~DL-L~r~~~g~L~~eI~~VIsNH~dl~~~v~~~~IPfhhip~~~~~-----k~e~E~~  157 (287)
T COG0788          84 LHDAAQRKRIAILVSKEDHCLGDL-LYRWRIGELPAEIVAVISNHDDLRPLVERFDIPFHHIPVTKEN-----KAEAEAR  157 (287)
T ss_pred             EeccccCceEEEEEechHHHHHHH-HHHHhcCCcCCceEEEEcCCHHHHHHHHHcCCCeeeccCCCCc-----chHHHHH
Confidence                        112222222222 222111         1146678888888887655444332211     4667778


Q ss_pred             HHHHhccCCcEEEeeccceeeecCcCCCCccccc-cc-------ccCCchhhhhccccccccccccc
Q 011491          209 VQRNLSKFGIKELARTGKIALRREKLGDTAPFWN-FS-------AASYPDLEEKKRTGIFIPETNQS  267 (484)
Q Consensus       209 fi~~L~~fGIlE~aRTG~iAl~Rg~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~  267 (484)
                      .+++++.||      +-.+-|+|=.+-++..+-+ +.       -.--|.+..+.|-.-...++++-
T Consensus       158 ~~~ll~~~~------~DlvVLARYMqILS~d~~~~~~g~iINIHHSFLPaF~GA~PY~QA~eRGVKl  218 (287)
T COG0788         158 LLELLEEYG------ADLVVLARYMQILSPDFVERFPGKIINIHHSFLPAFIGANPYHQAYERGVKL  218 (287)
T ss_pred             HHHHHHHhC------CCEEeehhhHhhCCHHHHHhccCcEEEecccccccCCCCChHHHHHhcCCeE
Confidence            899999999      2345588887777765521 11       11246665555444445555553

>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains

Probab=84.41  E-value=3.1  Score=31.05  Aligned_cols=50  Identities=24%  Similarity=0.393  Sum_probs=37.1

Q ss_pred             EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhc
Q 011491          321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK  378 (484)
Q Consensus       321 VeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~K  378 (484)
                      ..+.||++.++...+++.|.|++.++..     + .+++++++.  ...+++.+-|++
T Consensus        10 ~~~~~~~~~~i~~~L~~~~i~v~~i~~s-----~-~~is~~v~~--~~~~~~~~~l~~   59 (63)
T cd04923          10 MRSHPGVAAKMFKALAEAGINIEMISTS-----E-IKISCLVDE--DDAEKAVRALHE   59 (63)
T ss_pred             CCCCccHHHHHHHHHHHCCCCEEEEEcc-----C-CeEEEEEeH--HHHHHHHHHHHH
Confidence            3577999999999999999999999742     2 558888874  334555555554

This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK09084 aspartate kinase III; Validated

Probab=84.33  E-value=12  Score=40.37  Aligned_cols=113  Identities=18%  Similarity=0.231  Sum_probs=75.3

Q ss_pred             CchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChH-------HHHHHHHHHhcccceEEEeccCCchhHH
Q 011491          323 NTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDE-------SIGKLVQLLHKLIDLHEVQDITHLPFAE  395 (484)
Q Consensus       323 N~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~-------~ieql~kQL~KLidVi~V~dlt~~~~V~  395 (484)
                      ++||+++||...|.+.|+||+-++.+  +    ..++++++.++.       ..+.+.+.|+++-.   +       .+.
T Consensus       318 ~~~g~~a~if~~l~~~~I~Vd~I~ss--e----~sIs~~i~~~~~~~~~~~~~~~~l~~el~~~~~---i-------~~~  381 (448)
T PRK09084        318 HARGFLAEVFGILARHKISVDLITTS--E----VSVSLTLDTTGSTSTGDTLLTQALLTELSQLCR---V-------EVE  381 (448)
T ss_pred             ccccHHHHHHHHHHHcCCeEEEEecc--C----cEEEEEEechhhhhhhhHHHHHHHHHHHhcCCe---E-------EEE
Confidence            68999999999999999999999843  2    468999986542       23566666664221   1       235


Q ss_pred             HhhheeEEecCcc-ch----HHHHHHHHHcCcEEEEecCCEEEEEEeCCHHHHHHHHHHhc
Q 011491          396 RELILIKIAVNTA-AR----RDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLE  451 (484)
Q Consensus       396 REL~LIKV~~~~~-~r----~eI~~la~ifrakIVDvs~~si~iE~TG~~~Kidafi~lL~  451 (484)
                      +.+++|.|--... .+    ..+++.....+-.++..+...+.|-+.=+.+..+..++.|.
T Consensus       382 ~~va~IsvvG~gm~~~~gv~arif~aL~~~nI~~I~qgsSe~sIS~vV~~~d~~~al~~LH  442 (448)
T PRK09084        382 EGLALVALIGNNLSKACGVAKRVFGVLEPFNIRMICYGASSHNLCFLVPESDAEQVVQALH  442 (448)
T ss_pred             CCeEEEEEECCCcccCcChHHHHHHHHHhCCeEEEEEcCCCCcEEEEEcHHHHHHHHHHHH
Confidence            6788888865432 22    34555444456777777677666666666666666666654

>PRK04998 hypothetical protein; Provisional

Probab=84.16  E-value=8.3  Score=32.85  Aligned_cols=71  Identities=18%  Similarity=0.247  Sum_probs=60.0

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceE
Q 011491          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLH  383 (484)
Q Consensus       313 ~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gde~~ieql~kQL~KLidVi  383 (484)
                      ..|.+.+...+.++.++.|..+|.+..-.-+.++.-++....+..+|+.+. .+++++..|-+.|.+.-.|+
T Consensus        14 c~~~~Kvig~~~~~~~~~v~~v~~~~~~~~~~~~~r~S~~GkY~Svtv~v~v~s~eq~~~iY~~L~~~~~V~   85 (88)
T PRK04998         14 CSFTYKVMGLARPELVDQVVEVVQRHAPGDYTPTVKPSSKGNYHSVSITITATSIEQVETLYEELAKIEGVR   85 (88)
T ss_pred             CCceEEEEEeCcHhHHHHHHHHHHHhCCCCCCceEccCCCCEEEEEEEEEEECCHHHHHHHHHHHhcCCCEE
Confidence            358999999999999999999997763333457778888899999999987 67889999999999988885

>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=84.01  E-value=4.2  Score=29.15  Aligned_cols=47  Identities=17%  Similarity=0.335  Sum_probs=35.0

Q ss_pred             CchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHH
Q 011491           88 DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQ  138 (484)
Q Consensus        88 N~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQ  138 (484)
                      +.||.+.|+...+++.|+||+.++.+..  ...+++++..+  ..+++.+-
T Consensus        12 ~~~~~~~~i~~~l~~~~i~i~~i~~~~~--~~~~s~~v~~~--~~~~~~~~   58 (60)
T cd04868          12 GTPGVAAKIFSALAEAGINVDMISQSES--EVNISFTVDES--DLEKAVKA   58 (60)
T ss_pred             CCCCHHHHHHHHHHHCCCcEEEEEcCCC--cEEEEEEEeHH--HHHHHHHH
Confidence            4799999999999999999999987764  23477777642  34444443

This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am

>PLN02551 aspartokinase

Probab=83.92  E-value=8.2  Score=42.80  Aligned_cols=113  Identities=17%  Similarity=0.177  Sum_probs=71.3

Q ss_pred             CchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChH--------HHHHHHHHHhcccceEEEeccCCchhH
Q 011491          323 NTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDE--------SIGKLVQLLHKLIDLHEVQDITHLPFA  394 (484)
Q Consensus       323 N~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~--------~ieql~kQL~KLidVi~V~dlt~~~~V  394 (484)
                      ++||+++||.+.|.+.|+||+-++.+  +    ..++++++.++.        .++++...|+++.   .|       .+
T Consensus       378 ~~~g~~arvf~~l~~~~I~Vd~IssS--e----~sIs~~v~~~~~~~~~~i~~~l~~l~~el~~~~---~V-------~v  441 (521)
T PLN02551        378 GQYGFLAKVFSTFEDLGISVDVVATS--E----VSISLTLDPSKLWSRELIQQELDHLVEELEKIA---VV-------NL  441 (521)
T ss_pred             CcccHHHHHHHHHHHcCCcEEEEecc--C----CEEEEEEehhHhhhhhhHHHHHHHHHHHhhcCC---eE-------EE
Confidence            68999999999999999999999643  2    458899986542        2333444444321   11       24


Q ss_pred             HHhhheeEEecCccc----hHHHHHHHHHcCcEEEEec--CCEEEEEEeCCHHHHHHHHHHhc
Q 011491          395 ERELILIKIAVNTAA----RRDVLDIAKIFRARAVDVS--DHTITLELTGDLNKIIALQRLLE  451 (484)
Q Consensus       395 ~REL~LIKV~~~~~~----r~eI~~la~ifrakIVDvs--~~si~iE~TG~~~Kidafi~lL~  451 (484)
                      .+.+++|-|--....    -..+++.....+.+|.-++  ...+-|-+.=+.+..+..++.|.
T Consensus       442 ~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqgaSeinIS~vV~~~d~~~Av~aLH  504 (521)
T PLN02551        442 LQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGASKVNISLIVNDDEAEQCVRALH  504 (521)
T ss_pred             eCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecCCCcEEEEEEeHHHHHHHHHHHH
Confidence            466778777644212    1356666667777884444  55555555556666666666554

>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1)

Probab=83.38  E-value=4  Score=32.09  Aligned_cols=50  Identities=22%  Similarity=0.317  Sum_probs=38.0

Q ss_pred             CchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhc
Q 011491           88 DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK  141 (484)
Q Consensus        88 N~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~K  141 (484)
                      +.+|++.|+...|++.|+||.-++-|.++.  .++++++.  +..++.++.|++
T Consensus        12 ~~~~~~~~i~~aL~~~~I~v~~i~~g~s~~--sis~~v~~--~~~~~av~~Lh~   61 (65)
T cd04918          12 RSSLILERAFHVLYTKGVNVQMISQGASKV--NISLIVND--SEAEGCVQALHK   61 (65)
T ss_pred             CCccHHHHHHHHHHHCCCCEEEEEecCccc--eEEEEEeH--HHHHHHHHHHHH
Confidence            468999999999999999999999877632  48888875  334555555544

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=83.31  E-value=3.5  Score=29.61  Aligned_cols=48  Identities=23%  Similarity=0.360  Sum_probs=36.3

Q ss_pred             CchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHH
Q 011491          323 NTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLL  376 (484)
Q Consensus       323 N~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL  376 (484)
                      +.||.+.++...+++.|+||+.++.+..   + .+++++++.  +..+++.+-|
T Consensus        12 ~~~~~~~~i~~~l~~~~i~i~~i~~~~~---~-~~~s~~v~~--~~~~~~~~~l   59 (60)
T cd04868          12 GTPGVAAKIFSALAEAGINVDMISQSES---E-VNISFTVDE--SDLEKAVKAL   59 (60)
T ss_pred             CCCCHHHHHHHHHHHCCCcEEEEEcCCC---c-EEEEEEEeH--HHHHHHHHHh
Confidence            4799999999999999999999988764   2 457777773  3455555443

This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am

>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains

Probab=83.10  E-value=7.7  Score=28.89  Aligned_cols=50  Identities=18%  Similarity=0.328  Sum_probs=35.8

Q ss_pred             EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhc
Q 011491           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK  141 (484)
Q Consensus        86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~K  141 (484)
                      ..+.||++.|+...+++.|.|++.++..    ...+++++..  ...+++.+-|++
T Consensus        10 ~~~~~~~~~~i~~~L~~~~i~v~~i~~s----~~~is~~v~~--~~~~~~~~~l~~   59 (63)
T cd04923          10 MRSHPGVAAKMFKALAEAGINIEMISTS----EIKISCLVDE--DDAEKAVRALHE   59 (63)
T ss_pred             CCCCccHHHHHHHHHHHCCCCEEEEEcc----CCeEEEEEeH--HHHHHHHHHHHH
Confidence            4578999999999999999999999842    2447788764  233444444443

This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK09084 aspartate kinase III; Validated

Probab=83.05  E-value=24  Score=38.27  Aligned_cols=113  Identities=15%  Similarity=0.292  Sum_probs=75.2

Q ss_pred             CchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChh-------HHHHHHHHHhcCcceeEEEecCCchhhhhh
Q 011491           88 DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTER-------VLRQVVEQLNKLVNVIKVEDISNEPHVERE  160 (484)
Q Consensus        88 N~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~-------~veQI~kQL~KLidVikV~dlt~~~~V~RE  160 (484)
                      ++||+++||...|++.|+||+-++.++    .-++++++.++.       ..+.+.+.|+++-.   +       .+.+.
T Consensus       318 ~~~g~~a~if~~l~~~~I~Vd~I~sse----~sIs~~i~~~~~~~~~~~~~~~~l~~el~~~~~---i-------~~~~~  383 (448)
T PRK09084        318 HARGFLAEVFGILARHKISVDLITTSE----VSVSLTLDTTGSTSTGDTLLTQALLTELSQLCR---V-------EVEEG  383 (448)
T ss_pred             ccccHHHHHHHHHHHcCCeEEEEeccC----cEEEEEEechhhhhhhhHHHHHHHHHHHhcCCe---E-------EEECC
Confidence            689999999999999999999998432    347888875542       23556666654211   1       24678


Q ss_pred             heeEEEeCCC-----CCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhc
Q 011491          161 LMLIKLNGDT-----STWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLS  214 (484)
Q Consensus       161 LaLiKV~~~~-----~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~  214 (484)
                      +++|.|--..     .--..++......+-.++..+...+.|-+.=+.+..+..++.|.
T Consensus       384 va~IsvvG~gm~~~~gv~arif~aL~~~nI~~I~qgsSe~sIS~vV~~~d~~~al~~LH  442 (448)
T PRK09084        384 LALVALIGNNLSKACGVAKRVFGVLEPFNIRMICYGASSHNLCFLVPESDAEQVVQALH  442 (448)
T ss_pred             eEEEEEECCCcccCcChHHHHHHHHHhCCeEEEEEcCCCCcEEEEEcHHHHHHHHHHHH
Confidence            9999996643     22334555554456677777677666666666666666666664

>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins

Probab=82.66  E-value=3.1  Score=33.69  Aligned_cols=59  Identities=22%  Similarity=0.336  Sum_probs=42.3

Q ss_pred             eeEEecC--ccchHHHHHHHHHcCcE-------EEEe---cCCEEEEEEeCCHHHHHHHHHHhccCCc-EEE
Q 011491          400 LIKIAVN--TAARRDVLDIAKIFRAR-------AVDV---SDHTITLELTGDLNKIIALQRLLEPYGI-CEV  458 (484)
Q Consensus       400 LIKV~~~--~~~r~eI~~la~ifrak-------IVDv---s~~si~iE~TG~~~Kidafi~lL~pyGI-lEv  458 (484)
                      ++|+...  ....+-|-++++.|+..       |-.+   .-..+++|+.|+.++++++++.|+..|+ .|+
T Consensus         4 l~~l~f~g~~~~~piis~l~~~~~v~~nIl~g~i~~i~~~~~G~l~l~l~g~~~~~~~a~~~L~~~~v~vEv   75 (76)
T PF09383_consen    4 LVRLTFTGNSAQEPIISQLIREFGVDVNILHGNIEEIQGTPFGILILELPGDDEEIEKAIAYLREQGVEVEV   75 (76)
T ss_dssp             EEEEEEESCSSSSCHHHHHHHHHT-EEEEEEEEEEEETTEEEEEEEEEEES-HHHHHHHHHHHHHTTEEEEE
T ss_pred             EEEEEEcCCCcCchHHHHHHHHhCCCEEEEEEEeEEcCCeeEEEEEEEEECCHHHHHHHHHHHHHCCCeEEE
Confidence            5666554  34456788888887654       3333   3456999999999999999999999995 453

This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.

>TIGR00657 asp_kinases aspartate kinase

Probab=82.38  E-value=7.1  Score=41.71  Aligned_cols=114  Identities=21%  Similarity=0.275  Sum_probs=74.3

Q ss_pred             hhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhc---ccceEEEeccCCchhHHHhhhee
Q 011491          325 PGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK---LIDLHEVQDITHLPFAERELILI  401 (484)
Q Consensus       325 pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~K---LidVi~V~dlt~~~~V~REL~LI  401 (484)
                      ||++.||...|.+.|+||+.++.+.++    ..++++++.++  .+...+.|.+   ...+..|       .+.+.+++|
T Consensus       315 ~g~la~if~~L~~~~I~I~~i~q~~se----~sIs~~I~~~~--~~~a~~~L~~~~~~~~~~~I-------~~~~~~a~V  381 (441)
T TIGR00657       315 PGFLARVFGALAEAGINVDLITQSSSE----TSISFTVDKED--ADQAKTLLKSELNLSALSSV-------EVEKGLAKV  381 (441)
T ss_pred             ccHHHHHHHHHHHcCCeEEEEEecCCC----ceEEEEEEHHH--HHHHHHHHHHHHHhcCcceE-------EEcCCeEEE
Confidence            899999999999999999999754443    33788887432  4444444433   2233222       234567888


Q ss_pred             EEecC-----ccchHHHHHHHHHcCcEEEEecCCEEEEEEeCCHHHHHHHHHHhc
Q 011491          402 KIAVN-----TAARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLE  451 (484)
Q Consensus       402 KV~~~-----~~~r~eI~~la~ifrakIVDvs~~si~iE~TG~~~Kidafi~lL~  451 (484)
                      .|...     +..-.++++.....+-.|.-++.....+-++=+.+..+..++.|.
T Consensus       382 svvG~~~~~~~g~~a~if~~La~~~Inv~~i~~se~~Is~vV~~~d~~~a~~~Lh  436 (441)
T TIGR00657       382 SLVGAGMKSAPGVASKIFEALAQNGINIEMISSSEINISFVVDEKDAEKAVRLLH  436 (441)
T ss_pred             EEEcCCCCCCCchHHHHHHHHHHCCCCEEEEEecCCcEEEEEeHHHHHHHHHHHH
Confidence            88432     222357888888888888877544444555555666666666664

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.

>PRK09977 putative Mg(2+) transport ATPase; Provisional

Probab=82.16  E-value=8.9  Score=38.03  Aligned_cols=69  Identities=14%  Similarity=0.185  Sum_probs=54.4

Q ss_pred             EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEe
Q 011491          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQ  386 (484)
Q Consensus       315 htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~  386 (484)
                      |.+.+..++.  -+..+...|.+.++.+.++.....+++....+++.++ .+...+++..+|.++.+|.+|+
T Consensus       145 ~~~~i~~~~~--~~~~i~~~l~~~~i~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~L~~~~~V~~v~  213 (215)
T PRK09977        145 YHLQLTLVNG--NVVSMLDWFKQQKIKTDLVSLQENEDHEVVAIDITLH-ATTSIEDLYRLLKGIAGVKGVS  213 (215)
T ss_pred             EEEEEEEccc--cHHHHHHHHHHcCceEEEEEEEecCCCcEEEEEEEEC-CCCCHHHHHHHHhcCCCceEEE
Confidence            5555555443  3688889999999999999988776666666777777 4567889999999999999885

>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B

Probab=81.88  E-value=5.4  Score=35.34  Aligned_cols=68  Identities=18%  Similarity=0.300  Sum_probs=53.6

Q ss_pred             CchhHHHHHHHHHhccCceeeeeeeeec-CCCCeEEE--EEEEeCChHHHHHHHHHHhcccceEEEeccCC
Q 011491          323 NTPGVLNIVTGVISRRGYNIQSLAVGPA-EKEGLSCI--TTVVPGTDESIGKLVQLLHKLIDLHEVQDITH  390 (484)
Q Consensus       323 N~pGVL~RVtglFsRRGyNIeSLtVg~t-e~~~iSRi--TIVV~gde~~ieql~kQL~KLidVi~V~dlt~  390 (484)
                      +-|.+|..|..+-...|..+.+++.++. ..+++.++  +|.+.|+-..+-+.+++|+++-.++.|++++=
T Consensus        51 ~~~~ll~~l~~~A~~~gv~l~~~~p~~~~~~~~~~~~pv~i~l~G~Y~~l~~Fl~~l~~l~riv~i~~~~l  121 (144)
T PF04350_consen   51 EIPSLLEDLNRLAKKSGVKLTSFEPGEEEKKEFYIEIPVTISLEGSYHQLLNFLNDLENLPRIVNIENLSL  121 (144)
T ss_dssp             HHHHHHHHHHHHHHHTT-EEEEEEE---EE-SSEEEEEEEEEEEEEHHHHHHHHHHHHTSSS-EEEEEEEE
T ss_pred             hHHHHHHHHHHHHHHCCCeEEEeecCcccccCceEEEEEEEEEEeeHHHHHHHHHHHHcCCCeEEEeeeEE
Confidence            4589999999999999999999999854 34666664  55566999999999999999999999998863

>PRK09034 aspartate kinase; Reviewed

Probab=81.78  E-value=13  Score=40.36  Aligned_cols=116  Identities=8%  Similarity=0.134  Sum_probs=73.1

Q ss_pred             CchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHH--H-HHHHHHHhcccceEEEeccCCchhHHHhhh
Q 011491          323 NTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDES--I-GKLVQLLHKLIDLHEVQDITHLPFAERELI  399 (484)
Q Consensus       323 N~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~--i-eql~kQL~KLidVi~V~dlt~~~~V~REL~  399 (484)
                      .+||++.||.+.|++.|.||+.++      .+...++++++.++..  . ..+.+.|++-..+..|       .+.+.++
T Consensus       320 ~~~g~~a~if~~la~~~I~Vd~i~------ss~~sis~~v~~~~~~~a~~~~l~~el~~~~~~~~I-------~~~~~va  386 (454)
T PRK09034        320 REVGFGRKVLQILEDHGISYEHMP------SGIDDLSIIIRERQLTPKKEDEILAEIKQELNPDEL-------EIEHDLA  386 (454)
T ss_pred             CCccHHHHHHHHHHHcCCeEEEEc------CCCcEEEEEEeHHHhhHHHHHHHHHHHHHhhCCceE-------EEeCCEE
Confidence            368999999999999999999983      2235588999855321  1 5566666655443333       3455688


Q ss_pred             eeEEecC-----ccchHHHHHHHHHcCcEEEEec--CCEEEEEEeCCHHHHHHHHHHhc
Q 011491          400 LIKIAVN-----TAARRDVLDIAKIFRARAVDVS--DHTITLELTGDLNKIIALQRLLE  451 (484)
Q Consensus       400 LIKV~~~-----~~~r~eI~~la~ifrakIVDvs--~~si~iE~TG~~~Kidafi~lL~  451 (484)
                      +|.+--.     +..-..+++....++.+|.-++  .....|-++=+.+..+..++.|.
T Consensus       387 ~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~Se~~Is~vV~~~d~~~av~~LH  445 (454)
T PRK09034        387 IIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGSSEISIMFGVKNEDAEKAVKAIY  445 (454)
T ss_pred             EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCCcceEEEEEcHHHHHHHHHHHH
Confidence            8888422     1223578888888888885553  23244444444455555555554

>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI

Probab=81.46  E-value=4.3  Score=32.42  Aligned_cols=38  Identities=18%  Similarity=0.331  Sum_probs=30.4

Q ss_pred             EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeC
Q 011491           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSG  127 (484)
Q Consensus        86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~g  127 (484)
                      ..|.||++++|.+.+++.|.||+-++.. .+   -+++++..
T Consensus         9 ~~~~~~~~a~if~~La~~~InvDmI~~~-~~---~isFtv~~   46 (67)
T cd04914           9 KDNENDLQQRVFKALANAGISVDLINVS-PE---EVIFTVDG   46 (67)
T ss_pred             CCCCccHHHHHHHHHHHcCCcEEEEEec-CC---CEEEEEch
Confidence            4578999999999999999999999554 22   36777764

This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and

>PRK14434 acylphosphatase; Provisional

Probab=81.41  E-value=3.7  Score=35.38  Aligned_cols=44  Identities=18%  Similarity=0.178  Sum_probs=40.6

Q ss_pred             chHHHHHHHHHcC---cEEEEecCCEEEEEEeCCH-HHHHHHHHHhcc
Q 011491          409 ARRDVLDIAKIFR---ARAVDVSDHTITLELTGDL-NKIIALQRLLEP  452 (484)
Q Consensus       409 ~r~eI~~la~ifr---akIVDvs~~si~iE~TG~~-~Kidafi~lL~p  452 (484)
                      -|.-+.++|+.++   +.|-...+.++.+++.|+. +++++|++.|+.
T Consensus        17 FR~fv~~~A~~lg~l~G~V~N~~dGsVei~~qG~~~~~l~~f~~~l~~   64 (92)
T PRK14434         17 FRYSVYSLALEIGDIYGRVWNNDDGTVEILAQSDDSAKLAKFIQEIRK   64 (92)
T ss_pred             EhHHHHHHHHHcCCcEEEEEECCCCCEEEEEEcCCHHHHHHHHHHHhc
Confidence            3889999999999   9999999999999999997 699999999975

>PRK06291 aspartate kinase; Provisional

Probab=81.40  E-value=9.1  Score=41.47  Aligned_cols=121  Identities=15%  Similarity=0.177  Sum_probs=76.7

Q ss_pred             cCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhcCcceeEEEecCCchhhhhhheeEEE
Q 011491           87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKL  166 (484)
Q Consensus        87 eN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~KLidVikV~dlt~~~~V~RELaLiKV  166 (484)
                      .+.||++.|+...|++.|+|++-++.+.++  .-++++++.+  ..++.++.|++...=.    .-..=.+.+++++|.|
T Consensus       332 ~~~~g~~arvf~~L~~~gI~V~mIsq~sse--~sIsf~V~~~--d~~~av~~L~~~~~~~----~~~~i~~~~~~a~Isv  403 (465)
T PRK06291        332 VGVPGTAARIFSALAEEGVNVIMISQGSSE--SNISLVVDEA--DLEKALKALRREFGEG----LVRDVTFDKDVCVVAV  403 (465)
T ss_pred             CCCccHHHHHHHHHHHCCCcEEEEEecCCC--ceEEEEEeHH--HHHHHHHHHHHHHHHh----cCcceEEeCCEEEEEE
Confidence            378999999999999999999998866433  2377777643  2444444444422100    0011125667899988


Q ss_pred             eCCC-----CCHHHHHHHHHhcCcEEEEec--CCEEEEEEeCChhHHHHHHHHhcc
Q 011491          167 NGDT-----STWPEIMWLVDIFRAKVVDIS--EHALTIEVTGDPGKMVAVQRNLSK  215 (484)
Q Consensus       167 ~~~~-----~~r~eI~~l~~~FrAkIVDvs--~~sl~iE~TG~~~KIdafi~~L~~  215 (484)
                      --..     .--..++......+.+|.-++  ....-|-+.=+.+..+..++.|..
T Consensus       404 vG~gm~~~~gv~~rif~aL~~~~I~v~~isqgsSe~~Is~vV~~~d~~~av~~Lh~  459 (465)
T PRK06291        404 VGAGMAGTPGVAGRIFSALGESGINIKMISQGSSEVNISFVVDEEDGERAVKVLHD  459 (465)
T ss_pred             EcCCccCCcChHHHHHHHHHHCCCCEEEEEeccccCeEEEEEeHHHHHHHHHHHHH
Confidence            7543     234467777777788886555  444555555566667777776653

>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH)

Probab=81.38  E-value=5.7  Score=31.69  Aligned_cols=40  Identities=23%  Similarity=0.400  Sum_probs=32.8

Q ss_pred             EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC
Q 011491          321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG  364 (484)
Q Consensus       321 VeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~g  364 (484)
                      ..+.||++.++...+++.|.|++.++.+..+    .+++++++.
T Consensus        11 ~~~~~~~~~~i~~~L~~~~I~v~~i~~~~~~----~~isf~v~~   50 (80)
T cd04921          11 MVGVPGIAARIFSALARAGINVILISQASSE----HSISFVVDE   50 (80)
T ss_pred             CCCCccHHHHHHHHHHHCCCcEEEEEecCCc----ceEEEEEeH
Confidence            4578999999999999999999999887443    267788874

This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat

>PRK14434 acylphosphatase; Provisional

Probab=81.20  E-value=3.7  Score=35.34  Aligned_cols=45  Identities=13%  Similarity=0.124  Sum_probs=41.3

Q ss_pred             CCHHHHHHHHHhcC---cEEEEecCCEEEEEEeCCh-hHHHHHHHHhcc
Q 011491          171 STWPEIMWLVDIFR---AKVVDISEHALTIEVTGDP-GKMVAVQRNLSK  215 (484)
Q Consensus       171 ~~r~eI~~l~~~Fr---AkIVDvs~~sl~iE~TG~~-~KIdafi~~L~~  215 (484)
                      .-|.-+.++|+.++   +.|-...+.++.|++.|++ ++++.|++.|+.
T Consensus        16 GFR~fv~~~A~~lg~l~G~V~N~~dGsVei~~qG~~~~~l~~f~~~l~~   64 (92)
T PRK14434         16 GFRYSVYSLALEIGDIYGRVWNNDDGTVEILAQSDDSAKLAKFIQEIRK   64 (92)
T ss_pred             eEhHHHHHHHHHcCCcEEEEEECCCCCEEEEEEcCCHHHHHHHHHHHhc
Confidence            45889999999999   9999999999999999997 699999999975

>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form

Probab=81.16  E-value=9.8  Score=41.89  Aligned_cols=77  Identities=18%  Similarity=0.180  Sum_probs=61.8

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEEEeccCCc
Q 011491          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEVQDITHL  391 (484)
Q Consensus       313 ~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gde~~ieql~kQL~KLidVi~V~dlt~~  391 (484)
                      +.+.+++..-++||-|.+++.+++.+  ||..+.--. ...+..++.+.+. .+.+.+++|+++|++.=  .++.|+++.
T Consensus       324 re~~l~V~iPerPGal~~f~~~i~~~--nItef~yr~-~~~~~a~v~vgie~~~~~~~~~l~~~L~~~G--y~~~dls~n  398 (499)
T TIGR01124       324 REALLAVTIPEQPGSFLKFCELLGNR--NITEFNYRY-ADRKDAHIFVGVQLSNPQERQEILARLNDGG--YSVVDLTDD  398 (499)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHhhhc--ceEEEEEEe-cCCCeEEEEEEEEeCCHHHHHHHHHHHHHcC--CCeEECCCC
Confidence            47899999999999999999999984  998887765 3445677888877 35678999999998742  667888876


Q ss_pred             hhH
Q 011491          392 PFA  394 (484)
Q Consensus       392 ~~V  394 (484)
                      +..
T Consensus       399 e~~  401 (499)
T TIGR01124       399 ELA  401 (499)
T ss_pred             HHH
Confidence            544

Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.

>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway

Probab=80.98  E-value=4.4  Score=32.22  Aligned_cols=49  Identities=20%  Similarity=0.249  Sum_probs=39.1

Q ss_pred             chhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhc
Q 011491          324 TPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK  378 (484)
Q Consensus       324 ~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~K  378 (484)
                      +||++.|+...+++.|+|+..++.|+++    -+++++|+.  +..++.++.|++
T Consensus        14 ~~gv~~ki~~~L~~~~I~v~~i~~~~s~----~~is~~V~~--~~~~~av~~Lh~   62 (66)
T cd04915          14 TPGVLARGLAALAEAGIEPIAAHQSMRN----VDVQFVVDR--DDYDNAIKALHA   62 (66)
T ss_pred             cchHHHHHHHHHHHCCCCEEEEEecCCe----eEEEEEEEH--HHHHHHHHHHHH
Confidence            7999999999999999999998888764    357788873  456666666654

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=80.81  E-value=2.9  Score=33.34  Aligned_cols=46  Identities=28%  Similarity=0.384  Sum_probs=33.2

Q ss_pred             CchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHh
Q 011491           88 DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLN  140 (484)
Q Consensus        88 N~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~  140 (484)
                      |.||+++|++..++..|+||--++   ++.  .+.+.|+.  +.+++.++-|+
T Consensus        19 ~~~Gv~a~i~~~La~~~I~i~~is---S~~--~~~ilV~~--~~~~~A~~~L~   64 (65)
T PF13840_consen   19 DVPGVAAKIFSALAEAGINIFMIS---SEI--SISILVKE--EDLEKAVEALH   64 (65)
T ss_dssp             TSHHHHHHHHHHHHHTTS-ECEEE---ESS--EEEEEEEG--GGHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHCCCCEEEEE---Eee--eEEEEEeH--HHHHHHHHHhc
Confidence            599999999999999999998887   332  35666653  34556655554

>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional

Probab=80.80  E-value=26  Score=40.99  Aligned_cols=114  Identities=11%  Similarity=0.129  Sum_probs=75.1

Q ss_pred             eCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh-----HHHHHHHHHHhcccceEEEeccCCchhHHH
Q 011491          322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD-----ESIGKLVQLLHKLIDLHEVQDITHLPFAER  396 (484)
Q Consensus       322 eN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde-----~~ieql~kQL~KLidVi~V~dlt~~~~V~R  396 (484)
                      .+.||++.||.+.|++.|.||+-++.+  +    ..++++++..+     +.++++.++|+++-.|. +         .+
T Consensus       333 ~~~~g~~a~if~~la~~~I~Vd~I~ss--e----~sis~~i~~~~~~~~~~~~~~l~~~l~~~~~i~-~---------~~  396 (861)
T PRK08961        333 WQQVGFLADVFTLFKKHGLSVDLISSS--E----TNVTVSLDPSENLVNTDVLAALSADLSQICRVK-I---------IV  396 (861)
T ss_pred             cccccHHHHHHHHHHHcCCeEEEEEcC--C----CEEEEEEccccccchHHHHHHHHHHHhhcCcEE-E---------eC
Confidence            478999999999999999999988543  2    55888888543     45677777777543322 1         24


Q ss_pred             hhheeEEecCcc-----chHHHHHHHHHcCcEEEEecCCEEEEEEeCCHHHHHHHHHHhc
Q 011491          397 ELILIKIAVNTA-----ARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLE  451 (484)
Q Consensus       397 EL~LIKV~~~~~-----~r~eI~~la~ifrakIVDvs~~si~iE~TG~~~Kidafi~lL~  451 (484)
                      .+++|-|--..-     .-..+++.....+..++..+...+-|-+.=+.+..+..++.|.
T Consensus       397 ~va~ISvVG~gm~~~~gv~arif~aL~~~~I~~i~~gsSe~~Is~vV~~~d~~~av~~LH  456 (861)
T PRK08961        397 PCAAVSLVGRGMRSLLHKLGPAWATFGAERVHLISQASNDLNLTFVIDESDADGLLPRLH  456 (861)
T ss_pred             CeEEEEEeCCCcccCcChHHHHHHHHhhcCeEEEECCCccccEEEEEeHHHHHHHHHHHH
Confidence            567777754321     1235565555567788888777666655555555555555554

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=80.63  E-value=15  Score=38.00  Aligned_cols=150  Identities=17%  Similarity=0.205  Sum_probs=88.2

Q ss_pred             CceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC-C--CeEEEEEEEeCChHHHHHHHHHHhcccc---eE-
Q 011491          311 GLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-E--GLSCITTVVPGTDESIGKLVQLLHKLID---LH-  383 (484)
Q Consensus       311 ~~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~-~--~iSRiTIVV~gde~~ieql~kQL~KLid---Vi-  383 (484)
                      .++.++|.+-..|+||+..+|++...++|.||....-- +.. .  -+-|+.+-..+.....+++...+..+.+   .- 
T Consensus         4 ~~~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf-~D~~~g~FFmR~~f~~~~~~~~~~~l~~~f~~~a~~f~m~~   82 (287)
T COG0788           4 EPDTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQF-DDPETGRFFMRVEFEGEGGPLDREALRAAFAPLAEEFGMDW   82 (287)
T ss_pred             CccceEEEEecCCCCCcHHHHHHHHHHcCCceeecccc-cccccCeEEEEEEEecCCCcccHHHHHHHHHHHHHhhCcee
Confidence            34678999999999999999999999999999886665 221 2  2456666666554456666666555443   10 


Q ss_pred             EEe----------ccCCchhHHHhhh--------eeEEecCccchHHHHHHHHHcCcEEEEecCCEEEEEEeC--CHHHH
Q 011491          384 EVQ----------DITHLPFAERELI--------LIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLELTG--DLNKI  443 (484)
Q Consensus       384 ~V~----------dlt~~~~V~REL~--------LIKV~~~~~~r~eI~~la~ifrakIVDvs~~si~iE~TG--~~~Ki  443 (484)
                      ...          -.+.+.+--.+|+        =+.|.+=..+-.+...+++.|+----.+.       ++.  .++.=
T Consensus        83 ~~~~~~~~~ri~i~VSK~~HCL~DLL~r~~~g~L~~eI~~VIsNH~dl~~~v~~~~IPfhhip-------~~~~~k~e~E  155 (287)
T COG0788          83 RLHDAAQRKRIAILVSKEDHCLGDLLYRWRIGELPAEIVAVISNHDDLRPLVERFDIPFHHIP-------VTKENKAEAE  155 (287)
T ss_pred             EEeccccCceEEEEEechHHHHHHHHHHHhcCCcCCceEEEEcCCHHHHHHHHHcCCCeeecc-------CCCCcchHHH
Confidence            000          0111222222221        01111112345567778888775443333       333  46777


Q ss_pred             HHHHHHhccCCcEEEeecceeEeecCCCccc
Q 011491          444 IALQRLLEPYGICEVARTGRVALVRESGVDS  474 (484)
Q Consensus       444 dafi~lL~pyGIlEvaRTG~vAl~Rg~~~~~  474 (484)
                      +.++++++.||+      -.+-|+|=.++.|
T Consensus       156 ~~~~~ll~~~~~------DlvVLARYMqILS  180 (287)
T COG0788         156 ARLLELLEEYGA------DLVVLARYMQILS  180 (287)
T ss_pred             HHHHHHHHHhCC------CEEeehhhHhhCC
Confidence            788999999983      3344666555433

>PLN02551 aspartokinase

Probab=80.62  E-value=22  Score=39.52  Aligned_cols=114  Identities=17%  Similarity=0.279  Sum_probs=73.1

Q ss_pred             CchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChh--------HHHHHHHHHhcCcceeEEEecCCchhhhh
Q 011491           88 DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTER--------VLRQVVEQLNKLVNVIKVEDISNEPHVER  159 (484)
Q Consensus        88 N~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~--------~veQI~kQL~KLidVikV~dlt~~~~V~R  159 (484)
                      ++||+++||.+.|.+.|+||+-++.+  +  .-++++++.++.        .++++...|+++   ..|       .+.+
T Consensus       378 ~~~g~~arvf~~l~~~~I~Vd~IssS--e--~sIs~~v~~~~~~~~~~i~~~l~~l~~el~~~---~~V-------~v~~  443 (521)
T PLN02551        378 GQYGFLAKVFSTFEDLGISVDVVATS--E--VSISLTLDPSKLWSRELIQQELDHLVEELEKI---AVV-------NLLQ  443 (521)
T ss_pred             CcccHHHHHHHHHHHcCCcEEEEecc--C--CEEEEEEehhHhhhhhhHHHHHHHHHHHhhcC---CeE-------EEeC
Confidence            68999999999999999999999643  2  347888876542        233344444432   112       2567


Q ss_pred             hheeEEEeCCCCC----HHHHHHHHHhcCcEEEEec--CCEEEEEEeCChhHHHHHHHHhcc
Q 011491          160 ELMLIKLNGDTST----WPEIMWLVDIFRAKVVDIS--EHALTIEVTGDPGKMVAVQRNLSK  215 (484)
Q Consensus       160 ELaLiKV~~~~~~----r~eI~~l~~~FrAkIVDvs--~~sl~iE~TG~~~KIdafi~~L~~  215 (484)
                      .+++|-|--....    -..++......+.+|.-++  ...+-|-+.=+.+..+..++.|..
T Consensus       444 ~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqgaSeinIS~vV~~~d~~~Av~aLH~  505 (521)
T PLN02551        444 GRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGASKVNISLIVNDDEAEQCVRALHS  505 (521)
T ss_pred             CEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecCCCcEEEEEEeHHHHHHHHHHHHH
Confidence            7888888654222    2356666677777885554  455555555566666666666654

>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI

Probab=80.43  E-value=6.3  Score=30.73  Aligned_cols=49  Identities=20%  Similarity=0.393  Sum_probs=35.0

Q ss_pred             cCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhc
Q 011491           87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK  141 (484)
Q Consensus        87 eN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~K  141 (484)
                      .+.||++.|+...+++.|+|+...+-    .+..+.++++.  +..+++++.|++
T Consensus        12 ~~~~gi~~~if~aL~~~~I~v~~~~~----Se~~is~~v~~--~~~~~av~~Lh~   60 (64)
T cd04937          12 RGVPGVMAKIVGALSKEGIEILQTAD----SHTTISCLVSE--DDVKEAVNALHE   60 (64)
T ss_pred             cCCcCHHHHHHHHHHHCCCCEEEEEc----CccEEEEEEcH--HHHHHHHHHHHH
Confidence            47899999999999999999964442    23348888864  344555565554

This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th

>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI

Probab=80.24  E-value=4  Score=31.86  Aligned_cols=50  Identities=26%  Similarity=0.483  Sum_probs=36.7

Q ss_pred             eCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcc
Q 011491          322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKL  379 (484)
Q Consensus       322 eN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KL  379 (484)
                      .+.||++.|+...+.+.|+|+...+-  +    -.++.++++.  +..++.++.|++-
T Consensus        12 ~~~~gi~~~if~aL~~~~I~v~~~~~--S----e~~is~~v~~--~~~~~av~~Lh~~   61 (64)
T cd04937          12 RGVPGVMAKIVGALSKEGIEILQTAD--S----HTTISCLVSE--DDVKEAVNALHEA   61 (64)
T ss_pred             cCCcCHHHHHHHHHHHCCCCEEEEEc--C----ccEEEEEEcH--HHHHHHHHHHHHH
Confidence            47899999999999999999974442  1    2367788873  4566677766654

This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	484
2pc6_A	165	Crystal Structure Of Putative Acetolactate Synthase		1e-25
2pc6_A	165	Crystal Structure Of Putative Acetolactate Synthase		2e-21
2f1f_A	164	Crystal Structure Of The Regulatory Subunit Of Acet		4e-24
2f1f_A	164	Crystal Structure Of The Regulatory Subunit Of Acet		1e-18
2fgc_A	193	Crystal Structure Of Acetolactate Synthase- Small S		3e-21

>pdb|2PC6|A Chain A, Crystal Structure Of Putative Acetolactate Synthase- Small Subunit From Nitrosomonas Europaea Length = 165

Iteration: 1
 Score =  114 bits (285), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 63/155 (40%), Positives = 96/155 (61%), Gaps = 2/155 (1%)
Query: 79  RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVV 136
           RH IS+   +E+G ++R+AG+F+ RGYNIESL+V    D  L   T+V +G + ++ Q+ 
Sbjct: 4   RHIISLLXENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRXTLVTNGPDEIVEQIT 63
Query: 137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
           +QLNKL+ V+K+ D+S+E +VEREL L+K+        E   L DIFR  ++D++    T
Sbjct: 64  KQLNKLIEVVKLIDLSSEGYVERELXLVKVRAVGKDREEXKRLADIFRGNIIDVTNELYT 123
Query: 197 IEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRR 231
           IE+TG   K+    + +    I E+ARTG   L R
Sbjct: 124 IELTGTRSKLDGFLQAVDCNLILEIARTGVSGLSR 158

>pdb|2PC6|A Chain A, Crystal Structure Of Putative Acetolactate Synthase- Small Subunit From Nitrosomonas Europaea Length = 165

Iteration: 1
 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/158 (37%), Positives = 91/158 (57%)
Query: 311 GLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIG 370
           G   H +S+L  N  G L+ V G+ S RGYNI+SL+V P E   LS  T V  G DE + 
Sbjct: 1   GHXRHIISLLXENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRXTLVTNGPDEIVE 60
Query: 371 KLVQLLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDH 430
           ++ + L+KLI++ ++ D++   + EREL L+K+      R +   +A IFR   +DV++ 
Sbjct: 61  QITKQLNKLIEVVKLIDLSSEGYVERELXLVKVRAVGKDREEXKRLADIFRGNIIDVTNE 120
Query: 431 TITLELTGDLNKIIALQRLLEPYGICEVARTGRVALVR 468
             T+ELTG  +K+    + ++   I E+ARTG   L R
Sbjct: 121 LYTIELTGTRSKLDGFLQAVDCNLILEIARTGVSGLSR 158

>pdb|2F1F|A Chain A, Crystal Structure Of The Regulatory Subunit Of Acetohydroxyacid Synthase Isozyme Iii From E. Coli Length = 164

Iteration: 1
 Score =  109 bits (272), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 61/158 (38%), Positives = 100/158 (63%), Gaps = 7/158 (4%)
Query: 79  RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVV 136
           R  +SV + +ESG ++R+ G+F++RGYNIESL V    D  L   TI   G E+VL Q+ 
Sbjct: 3   RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIE 62
Query: 137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
           +QL+KLV+V++V ++    HVERE+ML+K+        E+    +IFR +++D++    T
Sbjct: 63  KQLHKLVDVLRVSELGQGAHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLYT 122
Query: 197 IEVTGDPGKM---VAVQRNLSKFGIKELARTGKIALRR 231
           +++ G  GK+   +A  R+++K  I E+AR+G + L R
Sbjct: 123 VQLAGTSGKLDAFLASIRDVAK--IVEVARSGVVGLSR 158

>pdb|2F1F|A Chain A, Crystal Structure Of The Regulatory Subunit Of Acetohydroxyacid Synthase Isozyme Iii From E. Coli Length = 164

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/153 (36%), Positives = 89/153 (58%), Gaps = 1/153 (0%)
Query: 317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLL 376
           LS+L+ N  G L+ V G+ S+RGYNI+SL V P +   LS +T    G ++ + ++ + L
Sbjct: 6   LSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQL 65
Query: 377 HKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLEL 436
           HKL+D+  V ++      ERE++L+KI  +   R +V    +IFR + +DV+    T++L
Sbjct: 66  HKLVDVLRVSELGQGAHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLYTVQL 125
Query: 437 TGDLNKIIA-LQRLLEPYGICEVARTGRVALVR 468
            G   K+ A L  + +   I EVAR+G V L R
Sbjct: 126 AGTSGKLDAFLASIRDVAKIVEVARSGVVGLSR 158

>pdb|2FGC|A Chain A, Crystal Structure Of Acetolactate Synthase- Small Subunit From Thermotoga Maritima Length = 193

Iteration: 1
 Score =  100 bits (248), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 59/159 (37%), Positives = 94/159 (59%), Gaps = 3/159 (1%)
Query: 312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGK 371
           +R H +S LV+N PGV   V  + +RRG+NI S+ VG +E  GLS +   V G D++I +
Sbjct: 27  IREHLVSXLVHNKPGVXRKVANLFARRGFNISSITVGESETPGLSRLVIXVKGDDKTIEQ 86
Query: 372 LVQLLHKLIDLHEVQDITHLP--FAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSD 429
           + +  +KL+++ +V  I  LP    ERE  LIK+  +   ++++  + +IFR + +DVS 
Sbjct: 87  IEKQAYKLVEVVKVTPIDPLPENRVEREXALIKVRFD-EDKQEIFQLVEIFRGKIIDVSR 145
Query: 430 HTITLELTGDLNKIIALQRLLEPYGICEVARTGRVALVR 468
               +E+TG  +K+ A   LL    + E+ARTG VA  R
Sbjct: 146 EGAIIEITGARSKVEAFINLLPQKQVEEIARTGIVAXNR 184

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	484
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	2e-75
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	2e-69
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	1e-74
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	1e-68
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	5e-74
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	1e-65
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-12
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	2e-04
2f06_A	144	Conserved hypothetical protein; structural genomic	3e-04

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6 Length = 165

 Score =  233 bits (597), Expect = 2e-75
 Identities = 64/155 (41%), Positives = 99/155 (63%), Gaps = 2/155 (1%)

Query: 79  RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVV 136
           RH IS+ + +E+G ++R+AG+F+ RGYNIESL+V    D  L   T+V +G + ++ Q+ 
Sbjct: 4   RHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQIT 63

Query: 137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
           +QLNKL+ V+K+ D+S+E +VERELML+K+        E+  L DIFR  ++D++    T
Sbjct: 64  KQLNKLIEVVKLIDLSSEGYVERELMLVKVRAVGKDREEMKRLADIFRGNIIDVTNELYT 123

Query: 197 IEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRR 231
           IE+TG   K+    + +    I E+ARTG   L R
Sbjct: 124 IELTGTRSKLDGFLQAVDCNLILEIARTGVSGLSR 158

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6 Length = 165

 Score =  218 bits (557), Expect = 2e-69
 Identities = 59/160 (36%), Positives = 95/160 (59%)

Query: 311 GLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIG 370
           G   H +S+L+ N  G L+ V G+ S RGYNI+SL+V P E   LS +T V  G DE + 
Sbjct: 1   GHMRHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVE 60

Query: 371 KLVQLLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDH 430
           ++ + L+KLI++ ++ D++   + EREL+L+K+      R ++  +A IFR   +DV++ 
Sbjct: 61  QITKQLNKLIEVVKLIDLSSEGYVERELMLVKVRAVGKDREEMKRLADIFRGNIIDVTNE 120

Query: 431 TITLELTGDLNKIIALQRLLEPYGICEVARTGRVALVRES 470
             T+ELTG  +K+    + ++   I E+ARTG   L R  
Sbjct: 121 LYTIELTGTRSKLDGFLQAVDCNLILEIARTGVSGLSRGE 160

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6 Length = 193

 Score =  232 bits (594), Expect = 1e-74
 Identities = 62/174 (35%), Positives = 100/174 (57%), Gaps = 5/174 (2%)

Query: 71  PITASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGT 128
                +++ H +S+ V ++ G++ ++A +FARRG+NI S+ VG +    L    I+V G 
Sbjct: 21  GHMTDQIREHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD 80

Query: 129 ERVLRQVVEQLNKLVNVIKVEDISNEP--HVERELMLIKLNGDTSTWPEIMWLVDIFRAK 186
           ++ + Q+ +Q  KLV V+KV  I   P   VERE+ LIK+  D     EI  LV+IFR K
Sbjct: 81  DKTIEQIEKQAYKLVEVVKVTPIDPLPENRVEREMALIKVRFD-EDKQEIFQLVEIFRGK 139

Query: 187 VVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLGDTAPF 240
           ++D+S     IE+TG   K+ A    L +  ++E+ARTG +A+ R  + +   F
Sbjct: 140 IIDVSREGAIIEITGARSKVEAFINLLPQKQVEEIARTGIVAMNRWNVKEGEGF 193

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6 Length = 193

 Score =  216 bits (553), Expect = 1e-68
 Identities = 60/171 (35%), Positives = 101/171 (59%), Gaps = 3/171 (1%)

Query: 306 DEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT 365
                 +R H +SMLV+N PGV+  V  + +RRG+NI S+ VG +E  GLS +  +V G 
Sbjct: 21  GHMTDQIREHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD 80

Query: 366 DESIGKLVQLLHKLIDLHEVQDITHLP--FAERELILIKIAVNTAARRDVLDIAKIFRAR 423
           D++I ++ +  +KL+++ +V  I  LP    ERE+ LIK+  +   ++++  + +IFR +
Sbjct: 81  DKTIEQIEKQAYKLVEVVKVTPIDPLPENRVEREMALIKVRFD-EDKQEIFQLVEIFRGK 139

Query: 424 AVDVSDHTITLELTGDLNKIIALQRLLEPYGICEVARTGRVALVRESGVDS 474
            +DVS     +E+TG  +K+ A   LL    + E+ARTG VA+ R +  + 
Sbjct: 140 IIDVSREGAIIEITGARSKVEAFINLLPQKQVEEIARTGIVAMNRWNVKEG 190

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6 Length = 164

 Score =  229 bits (587), Expect = 5e-74
 Identities = 59/158 (37%), Positives = 97/158 (61%), Gaps = 3/158 (1%)

Query: 77  VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQ 134
           + R  +SV + +ESG ++R+ G+F++RGYNIESL V    D  L   TI   G E+VL Q
Sbjct: 1   MARRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQ 60

Query: 135 VVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHA 194
           + +QL+KLV+V++V ++    HVERE+ML+K+        E+    +IFR +++D++   
Sbjct: 61  IEKQLHKLVDVLRVSELGQGAHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSL 120

Query: 195 LTIEVTGDPGKMVAVQRNLSKFG-IKELARTGKIALRR 231
            T+++ G  GK+ A   ++     I E+AR+G + L R
Sbjct: 121 YTVQLAGTSGKLDAFLASIRDVAKIVEVARSGVVGLSR 158

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6 Length = 164

 Score =  207 bits (530), Expect = 1e-65
 Identities = 55/158 (34%), Positives = 88/158 (55%), Gaps = 1/158 (0%)

Query: 312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGK 371
           +    LS+L+ N  G L+ V G+ S+RGYNI+SL V P +   LS +T    G ++ + +
Sbjct: 1   MARRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQ 60

Query: 372 LVQLLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHT 431
           + + LHKL+D+  V ++      ERE++L+KI  +   R +V    +IFR + +DV+   
Sbjct: 61  IEKQLHKLVDVLRVSELGQGAHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSL 120

Query: 432 ITLELTGDLNKIIALQRLLEPYG-ICEVARTGRVALVR 468
            T++L G   K+ A    +     I EVAR+G V L R
Sbjct: 121 YTVQLAGTSGKLDAFLASIRDVAKIVEVARSGVVGLSR 158

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 66.8 bits (162), Expect = 8e-12
 Identities = 70/444 (15%), Positives = 148/444 (33%), Gaps = 114/444 (25%)

Query: 120 LFTIVVSGTERVLRQVVEQLNK-----LVNVIKVEDISNEPHVERELMLI---KLNGDTS 171
           LF  ++S  E ++++ VE++ +     L++ IK E    +P +   + +    +L  D  
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ--RQPSMMTRMYIEQRDRLYNDNQ 124

Query: 172 TWPEIMWLVDIFRAK-VVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGK---- 226
            + +     ++ R +  + + +  L +     P K V +       G   +  +GK    
Sbjct: 125 VFAKY----NVSRLQPYLKLRQALLEL----RPAKNVLID------G---VLGSGKTWVA 167

Query: 227 -IALRREKLGDTAP---FW-NFSAASYPDLEEKKRTGIFIPETNQSLNGNANVDTSSRGD 281
                  K+        FW N    + P+          + E  Q L    + + +SR D
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPET---------VLEMLQKLLYQIDPNWTSRSD 218

Query: 282 VYPVEPYDDFSANQVLDAHWG---------ILYD-EDPSGLRSHTLS--MLVNNTPGVLN 329
                     S    L              +L + ++     +  LS  +L+  T     
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL--TTRFKQ 276

Query: 330 IVTGVISRRGYNI----QSLAVGPAEKEGL--SCI-----------TTVVPGTDESIGKL 372
           +   + +    +I     S+ + P E + L    +            T  P     I + 
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES 336

Query: 373 VQ--------LLHKLID-LHEVQD--ITHLPFAE-REL----------ILIKIAV----- 405
           ++          H   D L  + +  +  L  AE R++            I   +     
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW 396

Query: 406 NTAARRDVLDIA-KIFRARAVD-------VSDHTITLELTGDLNKIIAL-QRLLEPYGIC 456
               + DV+ +  K+ +   V+       +S  +I LEL   L    AL + +++ Y I 
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP 456

Query: 457 EVARTGRVALVRESGVDSTYLRGY 480
           +   +  +          +++ G+
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHI-GH 479

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A Length = 88

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 3/78 (3%)

Query: 81  TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQ 138
            I +   D++G+ N+I GV ++   NI ++ +            I V  T++ L  ++++
Sbjct: 7   GIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVKNTDK-LTTLMDK 65

Query: 139 LNKLVNVIKVEDISNEPH 156
           L K+  V  VE +SN  H
Sbjct: 66  LRKVQGVFTVERLSNLEH 83

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11 Length = 144

 Score = 40.3 bits (94), Expect = 3e-04
 Identities = 15/83 (18%), Positives = 40/83 (48%), Gaps = 3/83 (3%)

Query: 82  ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQ--L 139
           +S+F+ ++SG +  +  V A+   N+ +L +  N D  +   +VS  ++  + + +    
Sbjct: 9   LSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVSDPDKAYKALKDNHFA 68

Query: 140 NKLVNVIKVEDISNEPHVERELM 162
             + +V+ +    N P    +++
Sbjct: 69  VNITDVVGIS-CPNVPGALAKVL 90

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	484
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	100.0
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	100.0
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	100.0
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	100.0
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	100.0
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	100.0
1u8s_A	192	Glycine cleavage system transcriptional repressor,	99.17
2f06_A	144	Conserved hypothetical protein; structural genomic	99.04
2f06_A	144	Conserved hypothetical protein; structural genomic	98.99
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	98.86
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	98.74
1u8s_A	192	Glycine cleavage system transcriptional repressor,	98.59
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	98.58
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	98.51
2nyi_A	195	Unknown protein; protein structure initiative, PSI	98.19
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	98.03
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	97.71
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	97.3
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	97.12
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	97.06
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	97.04
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	96.97
2nyi_A	195	Unknown protein; protein structure initiative, PSI	96.92
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	96.92
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	96.91
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	96.57
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	96.5
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	96.5
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	96.49
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	96.45
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	96.39
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	96.35
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	96.35
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	96.31
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	96.3
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	96.2
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	96.15
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	96.09
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	96.05
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	95.99
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	95.8
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	95.62
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	95.4
2qmx_A	283	Prephenate dehydratase; APC86053, L-Phe inhibition	95.05
2qmx_A	283	Prephenate dehydratase; APC86053, L-Phe inhibition	94.68
3mwb_A	313	Prephenate dehydratase; L-Phe, PSI, MCSG, structur	94.56
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	94.46
3mwb_A	313	Prephenate dehydratase; L-Phe, PSI, MCSG, structur	94.43
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	94.07
2qmw_A	267	PDT, prephenate dehydratase; APC85812, prephenate	94.03
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	94.01
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	93.8
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	93.67
3mah_A	157	Aspartokinase; aspartate kinase, structural genomi	93.6
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	93.59
1phz_A	429	Protein (phenylalanine hydroxylase); aromatic amin	93.16
2qmw_A	267	PDT, prephenate dehydratase; APC85812, prephenate	92.48
3luy_A	329	Probable chorismate mutase; structural genomics, A	91.9
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	91.79
3mah_A	157	Aspartokinase; aspartate kinase, structural genomi	91.25
3luy_A	329	Probable chorismate mutase; structural genomics, A	91.24
1phz_A	429	Protein (phenylalanine hydroxylase); aromatic amin	91.05
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	91.03
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	90.96
2nzc_A	86	Hypothetical protein; sturctural genomics, TM1266,	89.83
1rwu_A	109	Hypothetical UPF0250 protein YBED; mixed alpha-bet	89.18
2h9z_A	86	Hypothetical protein HP0495; feredoxin-like (beta-	88.16
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	87.41
2nzc_A	86	Hypothetical protein; sturctural genomics, TM1266,	86.84
2lqj_A	94	Mg2+ transport protein; ACT domain, membrane prote	85.54
3dhx_A	106	Methionine import ATP-binding protein METN; methio	83.58
2qrr_A	101	Methionine import ATP-binding protein METN; alpha-	83.39
3ced_A	98	Methionine import ATP-binding protein METN 2; ABC	83.19
2qrr_A	101	Methionine import ATP-binding protein METN; alpha-	82.82
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	82.3
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	82.16
2qsw_A	100	Methionine import ATP-binding protein METN 2; ABC	81.38
3dhx_A	106	Methionine import ATP-binding protein METN; methio	80.9

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=100.00  E-value=1.4e-54  Score=410.15  Aligned_cols=171  Identities=35%  Similarity=0.548  Sum_probs=156.5

Q ss_pred             ccccccccccCCCCCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHH
Q 011491          297 LDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLL  376 (484)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL  376 (484)
                      .|+|||-+.+.    .|+|+|+++|+|+||+|+||+++|+||||||+||+++++++++++||||+|+|+++.++||.|||
T Consensus        16 ~~~~~~~m~~~----~m~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~e~~ieqL~kQL   91 (193)
T 2fgc_A           16 NLYFQGHMTDQ----IREHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQIEKQA   91 (193)
T ss_dssp             ---------------CEEEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECTTHHHHHHHHH
T ss_pred             chhhhccCCcc----ceEEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECCHHHHHHHHHHh
Confidence            58999988654    57999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccceEEEeccCC--chhHHHhhheeEEecCccchHHHHHHHHHcCcEEEEecCCEEEEEEeCCHHHHHHHHHHhccCC
Q 011491          377 HKLIDLHEVQDITH--LPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLEPYG  454 (484)
Q Consensus       377 ~KLidVi~V~dlt~--~~~V~REL~LIKV~~~~~~r~eI~~la~ifrakIVDvs~~si~iE~TG~~~Kidafi~lL~pyG  454 (484)
                      +||+||++|.++++  .++|+||||||||++++. |.||++++++|||+|||+++++++||+||+++||++|+++|+|||
T Consensus        92 ~KLidVikV~dl~~~~~~~v~REl~LiKV~~~~~-r~ei~~i~~~fra~ivDv~~~s~~iE~tG~~~ki~a~i~~l~~~g  170 (193)
T 2fgc_A           92 YKLVEVVKVTPIDPLPENRVEREMALIKVRFDED-KQEIFQLVEIFRGKIIDVSREGAIIEITGARSKVEAFINLLPQKQ  170 (193)
T ss_dssp             TTSTTEEEEEECCSSGGGEEEEEEEEEEEECSSC-HHHHHHHHHHTTCEEEEECSSEEEEEEEECHHHHHHHHHHSCGGG
T ss_pred             cCcCceEEEEEecCCCCccceeEEEEEEEeCCcC-HHHHHHHHHHcCCEEEEEcCCEEEEEEcCCHHHHHHHHHHhhhhC
Confidence            99999999999999  999999999999999988 999999999999999999999999999999999999999999999


Q ss_pred             cEEEeecceeEeecCCCc
Q 011491          455 ICEVARTGRVALVRESGV  472 (484)
Q Consensus       455 IlEvaRTG~vAl~Rg~~~  472 (484)
                      |+|++|||++||.||+..
T Consensus       171 i~E~~RtG~val~Rg~~~  188 (193)
T 2fgc_A          171 VEEIARTGIVAMNRWNVK  188 (193)
T ss_dssp             EEEEEECCCEEEECCCC-
T ss_pred             CEEEEccChhheecCCcc
Confidence            999999999999999864

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=100.00  E-value=2.8e-52  Score=385.98  Aligned_cols=161  Identities=37%  Similarity=0.577  Sum_probs=157.4

Q ss_pred             CceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEeccCC
Q 011491          311 GLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITH  390 (484)
Q Consensus       311 ~~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dlt~  390 (484)
                      |.|+|+|+++++|+||+|+||+++|++|||||+||+++++++++++||||++.++++.++||.+||+||+||++|.++++
T Consensus         1 ~~m~~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~d~~~leql~kQL~Kl~dV~~V~~~~~   80 (165)
T 2pc6_A            1 GHMRHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQITKQLNKLIEVVKLIDLSS   80 (165)
T ss_dssp             -CEEEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECHHHHHHHHHHHHHSTTEEEEEEGGG
T ss_pred             CceEEEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEeccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence            34699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhHHHhhheeEEecCccchHHHHHHHHHcCcEEEEecCCEEEEEEeCCHHHHHHHHHHhccCCcEEEeecceeEeecCC
Q 011491          391 LPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLEPYGICEVARTGRVALVRES  470 (484)
Q Consensus       391 ~~~V~REL~LIKV~~~~~~r~eI~~la~ifrakIVDvs~~si~iE~TG~~~Kidafi~lL~pyGIlEvaRTG~vAl~Rg~  470 (484)
                      .++++||||||||++++.+|.||++++++|||+|||++++++++|+||+++|++||+++|+||||+|++|||++||.||+
T Consensus        81 ~~~v~rEl~liKv~~~~~~r~~i~~~~~~fra~ivdv~~~~~~ie~tg~~~ki~~~~~~l~~~gi~e~~RtG~~a~~r~~  160 (165)
T 2pc6_A           81 EGYVERELMLVKVRAVGKDREEMKRLADIFRGNIIDVTNELYTIELTGTRSKLDGFLQAVDCNLILEIARTGVSGLSRGE  160 (165)
T ss_dssp             SCEEEEEEEEEEEECCTHHHHHHHHHHHHTTCEEEEEETTEEEEEEEECHHHHHHHHHHSCGGGEEEEEECCCEEEESTT
T ss_pred             cceeeeEEEEEEEeCCcccHHHHHHHHHHcCCEEEEEcCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEccChhheecCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             C
Q 011491          471 G  471 (484)
Q Consensus       471 ~  471 (484)
                      .
T Consensus       161 ~  161 (165)
T 2pc6_A          161 R  161 (165)
T ss_dssp             C
T ss_pred             c
Confidence            5

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=100.00  E-value=1.8e-51  Score=388.98  Aligned_cols=158  Identities=39%  Similarity=0.634  Sum_probs=153.3

Q ss_pred             ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChhHHHHHHHHHhcCcceeEEEecCC-
Q 011491           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISN-  153 (484)
Q Consensus        77 ~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gde~~veQI~kQL~KLidVikV~dlt~-  153 (484)
                      +|+|+|+++++|+||+|+||+++|++|||||+||+++++++++.  |||+|+++++.++||.+||+||+||++|.++++ 
T Consensus        27 ~m~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~e~~ieqL~kQL~KLidVikV~dl~~~  106 (193)
T 2fgc_A           27 IREHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQIEKQAYKLVEVVKVTPIDPL  106 (193)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECTTHHHHHHHHHTTSTTEEEEEECCSS
T ss_pred             ceEEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECCHHHHHHHHHHhcCcCceEEEEEecCC
Confidence            46999999999999999999999999999999999999999874  999999999999999999999999999999999 


Q ss_pred             -chhhhhhheeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecC
Q 011491          154 -EPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRRE  232 (484)
Q Consensus       154 -~~~V~RELaLiKV~~~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~fGIlE~aRTG~iAl~Rg  232 (484)
                       .++|+||||||||++++. |.||++++++|||+|||+++++++||+||+++||++|+++|+||||+|++|||++||.||
T Consensus       107 ~~~~v~REl~LiKV~~~~~-r~ei~~i~~~fra~ivDv~~~s~~iE~tG~~~ki~a~i~~l~~~gi~E~~RtG~val~Rg  185 (193)
T 2fgc_A          107 PENRVEREMALIKVRFDED-KQEIFQLVEIFRGKIIDVSREGAIIEITGARSKVEAFINLLPQKQVEEIARTGIVAMNRW  185 (193)
T ss_dssp             GGGEEEEEEEEEEEECSSC-HHHHHHHHHHTTCEEEEECSSEEEEEEEECHHHHHHHHHHSCGGGEEEEEECCCEEEECC
T ss_pred             CCccceeEEEEEEEeCCcC-HHHHHHHHHHcCCEEEEEcCCEEEEEEcCCHHHHHHHHHHhhhhCCEEEEccChhheecC
Confidence             999999999999999988 999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCC
Q 011491          233 KLG  235 (484)
Q Consensus       233 ~~~  235 (484)
                      +..
T Consensus       186 ~~~  188 (193)
T 2fgc_A          186 NVK  188 (193)
T ss_dssp             CC-
T ss_pred             Ccc
Confidence            854

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=100.00  E-value=2.8e-51  Score=378.78  Aligned_cols=160  Identities=34%  Similarity=0.545  Sum_probs=156.9

Q ss_pred             ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEeccCCc
Q 011491          312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHL  391 (484)
Q Consensus       312 ~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dlt~~  391 (484)
                      ||+|+|+++++|+||+|+||+++|++|||||+||+++++++++++||||++.++++.++||.+||+||+||++|.++++.
T Consensus         1 ~~~~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~d~~~leqI~kqL~Kl~dV~~V~r~~~~   80 (164)
T 2f1f_A            1 MARRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHKLVDVLRVSELGQG   80 (164)
T ss_dssp             -CEEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESCHHHHHHHHHHHHHSTTEEEEEEGGGS
T ss_pred             CeEEEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEeccHHHHHHHHHHHcCCCCEEEEEEcCCc
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHhhheeEEecCccchHHHHHHHHHcCcEEEEecCCEEEEEEeCCHHHHHHHHHHhccCC-cEEEeecceeEeecCC
Q 011491          392 PFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLEPYG-ICEVARTGRVALVRES  470 (484)
Q Consensus       392 ~~V~REL~LIKV~~~~~~r~eI~~la~ifrakIVDvs~~si~iE~TG~~~Kidafi~lL~pyG-IlEvaRTG~vAl~Rg~  470 (484)
                      ++++||||||||++++.+|.||++++++|||+|||++++++++|+||+++|++||+++|+||| |+|++|||.+||.||+
T Consensus        81 ~~v~rEl~liKv~~~~~~r~~i~~~~~~fra~ivdv~~~~~~ie~tg~~~ki~~~~~~l~~~g~i~e~~RtG~~a~~r~~  160 (164)
T 2f1f_A           81 AHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLYTVQLAGTSGKLDAFLASIRDVAKIVEVARSGVVGLSRGD  160 (164)
T ss_dssp             CEEEEEEEEEEEECCTHHHHHHHHHHHHTTCEEEEECSSEEEEEEEECHHHHHHHHHHHTTTSEEEEEEECCCEEEESTT
T ss_pred             ccceeEEEEEEEECCcccHHHHHHHHHHcCCEEEEECCCEEEEEEeCCHHHHHHHHHHHHhcCCEEEEECcChhheecCc
Confidence            999999999999999999999999999999999999999999999999999999999999999 9999999999999998


Q ss_pred             C
Q 011491          471 G  471 (484)
Q Consensus       471 ~  471 (484)
                      .
T Consensus       161 ~  161 (164)
T 2f1f_A          161 K  161 (164)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=100.00  E-value=7.9e-51  Score=376.33  Aligned_cols=158  Identities=41%  Similarity=0.633  Sum_probs=153.8

Q ss_pred             ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChhHHHHHHHHHhcCcceeEEEecCCc
Q 011491           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNE  154 (484)
Q Consensus        77 ~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gde~~veQI~kQL~KLidVikV~dlt~~  154 (484)
                      .|+|+|+++++|+||+|+||+++|++|||||+||+++++++++.  |||+++++++.++||.+||+||+||++|.++++.
T Consensus         2 ~m~~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~d~~~leql~kQL~Kl~dV~~V~~~~~~   81 (165)
T 2pc6_A            2 HMRHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQITKQLNKLIEVVKLIDLSSE   81 (165)
T ss_dssp             CEEEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECHHHHHHHHHHHHHSTTEEEEEEGGGS
T ss_pred             ceEEEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEeccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence            36899999999999999999999999999999999999998864  9999999999999999999999999999999999


Q ss_pred             hhhhhhheeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecCcC
Q 011491          155 PHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKL  234 (484)
Q Consensus       155 ~~V~RELaLiKV~~~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~fGIlE~aRTG~iAl~Rg~~  234 (484)
                      ++|+||||||||++++.+|.||++++++|||+|||++++++++|+||+++||++|+++|+||||+|++|||.+||.||++
T Consensus        82 ~~v~rEl~liKv~~~~~~r~~i~~~~~~fra~ivdv~~~~~~ie~tg~~~ki~~~~~~l~~~gi~e~~RtG~~a~~r~~~  161 (165)
T 2pc6_A           82 GYVERELMLVKVRAVGKDREEMKRLADIFRGNIIDVTNELYTIELTGTRSKLDGFLQAVDCNLILEIARTGVSGLSRGER  161 (165)
T ss_dssp             CEEEEEEEEEEEECCTHHHHHHHHHHHHTTCEEEEEETTEEEEEEEECHHHHHHHHHHSCGGGEEEEEECCCEEEESTTC
T ss_pred             ceeeeEEEEEEEeCCcccHHHHHHHHHHcCCEEEEEcCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEccChhheecCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999975

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=100.00  E-value=4.2e-50  Score=370.90  Aligned_cols=158  Identities=37%  Similarity=0.653  Sum_probs=153.5

Q ss_pred             ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChhHHHHHHHHHhcCcceeEEEecCCc
Q 011491           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNE  154 (484)
Q Consensus        77 ~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gde~~veQI~kQL~KLidVikV~dlt~~  154 (484)
                      ||+|+|+++++|+||+|+||+++|++|||||+||+++++++++.  |||+++++++.++||.+||+||+||++|.++++.
T Consensus         1 ~~~~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~d~~~leqI~kqL~Kl~dV~~V~r~~~~   80 (164)
T 2f1f_A            1 MARRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHKLVDVLRVSELGQG   80 (164)
T ss_dssp             -CEEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESCHHHHHHHHHHHHHSTTEEEEEEGGGS
T ss_pred             CeEEEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEeccHHHHHHHHHHHcCCCCEEEEEEcCCc
Confidence            67999999999999999999999999999999999999998764  9999999999999999999999999999999999


Q ss_pred             hhhhhhheeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCC-cEEEeeccceeeecCc
Q 011491          155 PHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFG-IKELARTGKIALRREK  233 (484)
Q Consensus       155 ~~V~RELaLiKV~~~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~fG-IlE~aRTG~iAl~Rg~  233 (484)
                      ++|+||||||||++++.+|.||++++++|||+|||++++++++|+||+++||++|+++|+||| |+|++|||.+||.||+
T Consensus        81 ~~v~rEl~liKv~~~~~~r~~i~~~~~~fra~ivdv~~~~~~ie~tg~~~ki~~~~~~l~~~g~i~e~~RtG~~a~~r~~  160 (164)
T 2f1f_A           81 AHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLYTVQLAGTSGKLDAFLASIRDVAKIVEVARSGVVGLSRGD  160 (164)
T ss_dssp             CEEEEEEEEEEEECCTHHHHHHHHHHHHTTCEEEEECSSEEEEEEEECHHHHHHHHHHHTTTSEEEEEEECCCEEEESTT
T ss_pred             ccceeEEEEEEEECCcccHHHHHHHHHHcCCEEEEECCCEEEEEEeCCHHHHHHHHHHHHhcCCEEEEECcChhheecCc
Confidence            999999999999999999999999999999999999999999999999999999999999999 9999999999999997


Q ss_pred             C
Q 011491          234 L  234 (484)
Q Consensus       234 ~  234 (484)
                      +
T Consensus       161 ~  161 (164)
T 2f1f_A          161 K  161 (164)
T ss_dssp             C
T ss_pred             c
Confidence            5

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=99.17  E-value=1.5e-09  Score=99.84  Aligned_cols=64  Identities=20%  Similarity=0.303  Sum_probs=53.3

Q ss_pred             EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhcC
Q 011491           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKL  142 (484)
Q Consensus        79 khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~KL  142 (484)
                      +++|+|+..|+||++++|+++++++|+||.++....+.+.-.|++++.+++...+++.++|.++
T Consensus         6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~~~~~~l~~~L~~~   69 (192)
T 1u8s_A            6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSPSNITRVETTLPLL   69 (192)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECHHHHHHHHHHHHHH
T ss_pred             EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCCCCHHHHHHHHHHH
Confidence            6899999999999999999999999999999998875443347788877666778888888544

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=99.04  E-value=4.2e-09  Score=92.49  Aligned_cols=126  Identities=15%  Similarity=0.171  Sum_probs=89.2

Q ss_pred             CCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEeccC
Q 011491          310 SGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDIT  389 (484)
Q Consensus       310 ~~~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dlt  389 (484)
                      ..||.|.|++.++|+||+|++|+++|+++|+||+++++..+.++++.|++  + .+.+...++.++..-.  +...    
T Consensus         2 ~~m~~~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~--~-~d~~~a~~~L~~~G~~--v~~~----   72 (144)
T 2f06_A            2 NAMVAKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGI--V-SDPDKAYKALKDNHFA--VNIT----   72 (144)
T ss_dssp             CSSEEEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEE--E-SCHHHHHHHHHHTTCC--EEEE----
T ss_pred             CccEEEEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEE--e-CCHHHHHHHHHHcCCe--Eeee----
Confidence            46889999999999999999999999999999999999988887887887  3 4666666666654222  1111    


Q ss_pred             CchhHHHhhheeEEecCccchHHHHHHHHHcCcEEEE---e-cCCE--EEEEEeCCHHHHHHHHHHhccCCc
Q 011491          390 HLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVD---V-SDHT--ITLELTGDLNKIIALQRLLEPYGI  455 (484)
Q Consensus       390 ~~~~V~REL~LIKV~~~~~~r~eI~~la~ifrakIVD---v-s~~s--i~iE~TG~~~Kidafi~lL~pyGI  455 (484)
                             .+.-+.++-.+..-.++.++....+.+|..   . ++..  ++++.    +..+...+.|+..|.
T Consensus        73 -------svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~----~d~~~A~~~L~~~g~  133 (144)
T 2f06_A           73 -------DVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRP----SNMDKCIEVLKEKKV  133 (144)
T ss_dssp             -------EEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEE----SCHHHHHHHHHHTTC
T ss_pred             -------eEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEe----CCHHHHHHHHHHcCC
Confidence                   233445655555567788888777888833   2 3443  44555    366667777777664

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=98.99  E-value=9.4e-09  Score=90.25  Aligned_cols=125  Identities=14%  Similarity=0.218  Sum_probs=89.0

Q ss_pred             cceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhcCcceeEEEecCCch
Q 011491           76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEP  155 (484)
Q Consensus        76 ~~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~KLidVikV~dlt~~~  155 (484)
                      .||.|.|+++++|+||+|+||+++|+++|+||+++++..+.+++.+++++ .|.+...++.++..-.+...         
T Consensus         3 ~m~~~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~~-~d~~~a~~~L~~~G~~v~~~---------   72 (144)
T 2f06_A            3 AMVAKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIV-SDPDKAYKALKDNHFAVNIT---------   72 (144)
T ss_dssp             SSEEEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEE-SCHHHHHHHHHHTTCCEEEE---------
T ss_pred             ccEEEEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEe-CCHHHHHHHHHHcCCeEeee---------
Confidence            57899999999999999999999999999999999999887777655654 45555666655543221111         


Q ss_pred             hhhhhheeEEEeCCCCCHHHHHHHHHhcCcEEEE---e-cCC--EEEEEEeCChhHHHHHHHHhccCCc
Q 011491          156 HVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVD---I-SEH--ALTIEVTGDPGKMVAVQRNLSKFGI  218 (484)
Q Consensus       156 ~V~RELaLiKV~~~~~~r~eI~~l~~~FrAkIVD---v-s~~--sl~iE~TG~~~KIdafi~~L~~fGI  218 (484)
                          .+.-+.+.-.|..-.++.++....+.+|..   . ++.  +++++.    +..+..++.|+.-|.
T Consensus        73 ----svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~----~d~~~A~~~L~~~g~  133 (144)
T 2f06_A           73 ----DVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRP----SNMDKCIEVLKEKKV  133 (144)
T ss_dssp             ----EEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEE----SCHHHHHHHHHHTTC
T ss_pred             ----eEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEe----CCHHHHHHHHHHcCC
Confidence                334556666677777888888888888843   2 333  344555    356666777776664

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=98.86  E-value=2.2e-08  Score=79.79  Aligned_cols=76  Identities=18%  Similarity=0.344  Sum_probs=66.5

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEEEeccCCc
Q 011491          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEVQDITHL  391 (484)
Q Consensus       314 ~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gde~~ieql~kQL~KLidVi~V~dlt~~  391 (484)
                      .+.|.+.+.|+||+|++|+++|++.|+||.++.+....+  ...+++.+. .+.+.+++++++|+++-+|.+|..+...
T Consensus         5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~--~~~~~i~v~~~~~~~l~~l~~~L~~~~~V~~v~~~~~~   81 (88)
T 2ko1_A            5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDG--IFTCNLMIFVKNTDKLTTLMDKLRKVQGVFTVERLSNL   81 (88)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSS--EEEEEEEEEESSHHHHHHHHHHHTTCTTEEEEEEECSC
T ss_pred             EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCC--EEEEEEEEEECCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            578999999999999999999999999999999987543  778888776 4667899999999999999999877654

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=98.74  E-value=6.8e-08  Score=76.89  Aligned_cols=77  Identities=22%  Similarity=0.326  Sum_probs=64.4

Q ss_pred             eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEe-CChhHHHHHHHHHhcCcceeEEEecCCc
Q 011491           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVS-GTERVLRQVVEQLNKLVNVIKVEDISNE  154 (484)
Q Consensus        78 ~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~-gde~~veQI~kQL~KLidVikV~dlt~~  154 (484)
                      ..+.|.+.+.|+||+|++|+++|++.|+||.++.+....+...+++.+. .+...+++++++|+++-+|.+|..+..-
T Consensus         4 ~~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~~~~~l~~l~~~L~~~~~V~~v~~~~~~   81 (88)
T 2ko1_A            4 FLAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVKNTDKLTTLMDKLRKVQGVFTVERLSNL   81 (88)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEESSHHHHHHHHHHHTTCTTEEEEEEECSC
T ss_pred             EEEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEECCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            3578999999999999999999999999999999987554223666665 3567899999999999999999877653

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=98.59  E-value=3.2e-07  Score=84.26  Aligned_cols=113  Identities=12%  Similarity=0.169  Sum_probs=81.4

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccc----eEEEeccC
Q 011491          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLID----LHEVQDIT  389 (484)
Q Consensus       314 ~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLid----Vi~V~dlt  389 (484)
                      ++.|+|...|+||++++|+++++++|+||.++....+  .+...|++++.+++...++|.++|.++.+    ...+...+
T Consensus         6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~--~~~f~~~~~v~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~   83 (192)
T 1u8s_A            6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMF--GKEFTLLMLISGSPSNITRVETTLPLLGQQHDLITMMKRTS   83 (192)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEE--TTEEEEEEEEEECHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred             EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeec--CCceEEEEEEecCCCCHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            5899999999999999999999999999999888774  46677788887766778899999887653    44455444


Q ss_pred             CchhHHHhhheeEEecCccchH----HHHHHHHHcCcEEEEecC
Q 011491          390 HLPFAERELILIKIAVNTAARR----DVLDIAKIFRARAVDVSD  429 (484)
Q Consensus       390 ~~~~V~REL~LIKV~~~~~~r~----eI~~la~ifrakIVDvs~  429 (484)
                      ..+. .++...++|.+...+|+    +|.++...+++.|.++..
T Consensus        84 ~~~~-~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~  126 (192)
T 1u8s_A           84 PHDH-QTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSA  126 (192)
T ss_dssp             CCCC-CCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCC-ccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhh
Confidence            3321 34444455554444454    455666677888877543

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=98.58  E-value=1.4e-07  Score=76.27  Aligned_cols=68  Identities=15%  Similarity=0.232  Sum_probs=58.4

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCC-hHHHHHHHHHHhcccce
Q 011491          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT-DESIGKLVQLLHKLIDL  382 (484)
Q Consensus       313 ~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd-e~~ieql~kQL~KLidV  382 (484)
                      ++++|++...|+||+|++|+++++.+|+||.++......  +...+++.+... ...+++|.++|.++-+-
T Consensus         4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~--~~~~~~i~v~~~~~~~l~~l~~~L~~~~~~   72 (91)
T 1zpv_A            4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLD--EYFTMMAVVSSDEKQDFTYLRNEFEAFGQT   72 (91)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEET--TEEEEEEEEEESSCCCHHHHHHHHHHHHHH
T ss_pred             ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEc--CEEEEEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            579999999999999999999999999999999998765  677777777633 35789999999987654

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=98.51  E-value=1.6e-07  Score=75.78  Aligned_cols=70  Identities=20%  Similarity=0.311  Sum_probs=57.0

Q ss_pred             eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCC-hhHHHHHHHHHhcCcceeE
Q 011491           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT-ERVLRQVVEQLNKLVNVIK  147 (484)
Q Consensus        78 ~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gd-e~~veQI~kQL~KLidVik  147 (484)
                      ++++|++...|+||+|++|+++++++|+||.+++.........+++.+..+ ...++++.++|.++-+...
T Consensus         4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~~~~l~~l~~~L~~~~~~~~   74 (91)
T 1zpv_A            4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQDFTYLRNEFEAFGQTLN   74 (91)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSCCCHHHHHHHHHHHHHHHT
T ss_pred             ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            678999999999999999999999999999999998765322366666533 3579999999998876543

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=98.19  E-value=6.4e-05  Score=69.73  Aligned_cols=65  Identities=20%  Similarity=0.198  Sum_probs=49.4

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecC----CCCeEEEEEEEeC-ChHHHHHHHHHHhcc
Q 011491          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE----KEGLSCITTVVPG-TDESIGKLVQLLHKL  379 (484)
Q Consensus       314 ~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te----~~~iSRiTIVV~g-de~~ieql~kQL~KL  379 (484)
                      +|+|.+...|+||++.+|+++|+++|.||..+......    ..+.-.|.+.+.. +... ++|.+.|.++
T Consensus        93 ~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~~~~~-~~l~~~l~~~  162 (195)
T 2nyi_A           93 EYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFPFPLY-QEVVTALSRV  162 (195)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEEGGGH-HHHHHHHHHH
T ss_pred             EEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcCCCcc-HHHHHHHHHH
Confidence            68999999999999999999999999999998876443    3456666666653 2334 6666666643

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=98.03  E-value=1.5e-05  Score=77.11  Aligned_cols=81  Identities=20%  Similarity=0.217  Sum_probs=65.8

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC---CCeEEEEEEEeCChHHHHHHHHHHhcccceEEEeccC
Q 011491          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK---EGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDIT  389 (484)
Q Consensus       313 ~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~---~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dlt  389 (484)
                      |..+|.+..+|+||+|+.|+.+++..+.||.++++.....   .+...|+|-+...  .++.++++|+++-+|.+|+.+.
T Consensus         3 ~~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV~d~--~Le~LL~kLrkI~gV~~V~Rv~   80 (223)
T 1y7p_A            3 MLRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGG--DFEKILERVKTFDYIIEIEEEE   80 (223)
T ss_dssp             -CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSS--CHHHHHHHHHTCTTEEEEEEEC
T ss_pred             ceEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEECCC--CHHHHHHHHhCCCCeeEEEEEc
Confidence            5789999999999999999999999999999999977641   4688888666644  9999999999999999999987


Q ss_pred             CchhHH
Q 011491          390 HLPFAE  395 (484)
Q Consensus       390 ~~~~V~  395 (484)
                      +-.-++
T Consensus        81 ~~~~i~   86 (223)
T 1y7p_A           81 SFERVF   86 (223)
T ss_dssp             CHHHHT
T ss_pred             chhhhc
Confidence            765554

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=97.71  E-value=9.9e-05  Score=71.40  Aligned_cols=79  Identities=16%  Similarity=0.272  Sum_probs=61.3

Q ss_pred             eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecC----CC-cEEEEEEeCChhHHHHHHHHHhcCcceeEEEecC
Q 011491           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV----DK-ALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS  152 (484)
Q Consensus        78 ~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Te----d~-~~iTIVV~gde~~veQI~kQL~KLidVikV~dlt  152 (484)
                      |..+|.+..+|+||+|+.|+.+++..+.||.++++....    +. ..++|-++..  .++.++++|+++-+|.+|+.+.
T Consensus         3 ~~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV~d~--~Le~LL~kLrkI~gV~~V~Rv~   80 (223)
T 1y7p_A            3 MLRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGG--DFEKILERVKTFDYIIEIEEEE   80 (223)
T ss_dssp             -CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSS--CHHHHHHHHHTCTTEEEEEEEC
T ss_pred             ceEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEECCC--CHHHHHHHHhCCCCeeEEEEEc
Confidence            467999999999999999999999999999999998764    32 2366555543  9999999999999999999886


Q ss_pred             Cchhhh
Q 011491          153 NEPHVE  158 (484)
Q Consensus       153 ~~~~V~  158 (484)
                      .-..++
T Consensus        81 ~~~~i~   86 (223)
T 1y7p_A           81 SFERVF   86 (223)
T ss_dssp             CHHHHT
T ss_pred             chhhhc
Confidence            644443

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=97.30  E-value=0.003  Score=55.03  Aligned_cols=103  Identities=13%  Similarity=0.234  Sum_probs=74.6

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEEEeccCCchhH
Q 011491          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEVQDITHLPFA  394 (484)
Q Consensus       316 tLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gde~~ieql~kQL~KLidVi~V~dlt~~~~V  394 (484)
                      .|.|...|++|+|+.|+.+++..+.||.++.+.+.   +.  +.+.++ .+.+.+..+..++.++-++..+....-.+. 
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~---g~--i~~~~~~~~~~~~~~L~~~l~~i~~~~~~~~~~~~~~-   75 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI---GR--IYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPS-   75 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT---TE--EEEEECCCCHHHHHHHHHHHHHSTTEEEEEEESCCTT-
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC---CE--EEEEEEeCCHHHHHHHHHHHHcCCCeeEEEEecCCcc-
Confidence            47899999999999999999999999999999665   54  555555 466789999999999999998876553322 


Q ss_pred             HHhhheeEEecCccchHHHHHHHHHcCcEEEEecCCEEEEEE
Q 011491          395 ERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLEL  436 (484)
Q Consensus       395 ~REL~LIKV~~~~~~r~eI~~la~ifrakIVDvs~~si~iE~  436 (484)
                                  ...+..+..+.+....=|+-+..+.-++-+
T Consensus        76 ------------~~~~~~l~~il~~~~~gvi~~D~~g~I~~~  105 (190)
T 2jhe_A           76 ------------EREHLALSALLEALPEPVLSVDMKSKVDMA  105 (190)
T ss_dssp             ------------THHHHHHHHHHHHCSSCEEEECTTCBEEEE
T ss_pred             ------------HHHHHHHHHHHHhCCCcEEEEcCCCCEEEE
Confidence                        112234445555555555555555544443

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=97.12  E-value=0.0046  Score=53.83  Aligned_cols=69  Identities=12%  Similarity=0.304  Sum_probs=58.8

Q ss_pred             EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEe-CChhHHHHHHHHHhcCcceeEEEecC
Q 011491           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVS-GTERVLRQVVEQLNKLVNVIKVEDIS  152 (484)
Q Consensus        81 tISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~-gde~~veQI~kQL~KLidVikV~dlt  152 (484)
                      .|.|...|++|+|+.|+.+++..+.||.++.+.+.   +.+.+.+. .+.+.+..+..+++++-++..+....
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~---g~i~~~~~~~~~~~~~~L~~~l~~i~~~~~~~~~~   71 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI---GRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVP   71 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT---TEEEEEECCCCHHHHHHHHHHHHHSTTEEEEEEES
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC---CEEEEEEEeCCHHHHHHHHHHHHcCCCeeEEEEec
Confidence            47899999999999999999999999999999665   44656555 45678999999999999999887654

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=97.06  E-value=0.0021  Score=66.33  Aligned_cols=73  Identities=14%  Similarity=0.302  Sum_probs=62.1

Q ss_pred             EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhcCcceeEEEec
Q 011491           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI  151 (484)
Q Consensus        79 khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~KLidVikV~dl  151 (484)
                      .+.|.+.=+|+||++.+|+.+|++.|+||.++.++...+.+++.+-+++....-+.++++|+++-.|++|..+
T Consensus       331 ~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidvD~~~~~~~~~l~~l~~i~~v~~vr~l  403 (404)
T 1sc6_A          331 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVAEKALQAMKAIPGTIRARLL  403 (404)
T ss_dssp             SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEECCHHHHHHHHHHHHTSTTEEEEEEC
T ss_pred             cceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEcCCCCCCCHHHHHHHhcCCCeeEEEEe
Confidence            4678899999999999999999999999999999985554567777876544678999999999999998754

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=97.04  E-value=0.0009  Score=70.23  Aligned_cols=72  Identities=14%  Similarity=0.191  Sum_probs=58.3

Q ss_pred             ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecC-CCCeEEEEEEEe-CChHHHHHHHHHHhcccceE
Q 011491          312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE-KEGLSCITTVVP-GTDESIGKLVQLLHKLIDLH  383 (484)
Q Consensus       312 ~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te-~~~iSRiTIVV~-gde~~ieql~kQL~KLidVi  383 (484)
                      ..+|.|.+.+.|+||||.+|+++|...|++|+|+...+.. ..+...+.|+++ ..+..+++.+++|++|-.|.
T Consensus       357 ~~~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q~~~~~~~~~~~~v~~th~~~e~~~~~~~~~~~~~~~v~  430 (444)
T 3mtj_A          357 RTAYYLRLRAFDRPGVLADITRILADSSISIDAMVQKEPAEGEEQVDIILLTHVTLEKNVNAAIAKIEALDAVA  430 (444)
T ss_dssp             EEEEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEECC------CEEEEEEECSEEHHHHHHHHHHHTTSTTBC
T ss_pred             ceeeEEEEEecCcccHHHHHHHHHHhcCCceeEEeecccccCCCCceEEEEeccCCHHHHHHHHHHHhcCCccc
Confidence            3679999999999999999999999999999998876542 233468888887 57888999999999987664

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=96.97  E-value=0.071  Score=57.70  Aligned_cols=288  Identities=11%  Similarity=0.130  Sum_probs=161.9

Q ss_pred             EEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-cEEEEEEeCCh-hHHHHHHHHHhcCc-------ceeEEEecCCch
Q 011491           85 FVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIVVSGTE-RVLRQVVEQLNKLV-------NVIKVEDISNEP  155 (484)
Q Consensus        85 lVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~~iTIVV~gde-~~veQI~kQL~KLi-------dVikV~dlt~~~  155 (484)
                      .+.+.||++.||-+.|++.|+||+-++.+..+.. .-+++++..++ ....++.+++.+-+       ..-+|.      
T Consensus       277 ~~~~~~g~~~~if~~La~~~I~Vd~I~qs~~~~~~~~Isftv~~~~~~~a~~~l~~~~~el~~~~~~~~~~~v~------  350 (600)
T 3l76_A          277 RVPDRPGVASKLFRDIAQQQVDIDLIIQSIHDGNSNDIAFTVVKDLLNTAEAVTSAIAPALRSYPEADQEAEII------  350 (600)
T ss_dssp             EEECSTTHHHHHHHHHHHTTCCCCCEEBCCCBTTEEEEEEEECGGGHHHHHHHHHHHGGGGSSSTTCSSSSEEE------
T ss_pred             CCCCcccHHHHHHHHHHHcCCCEEEEEeeccCCCCceEEEEEeHHHHHHHHHHHHHHHHHhhccccccCcceeE------
Confidence            5678999999999999999999999987765543 23888887543 22333333333221       111222      


Q ss_pred             hhhhhheeEEEeCC-----CCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc-CCcEEEeeccceee
Q 011491          156 HVERELMLIKLNGD-----TSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK-FGIKELARTGKIAL  229 (484)
Q Consensus       156 ~V~RELaLiKV~~~-----~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~-fGIlE~aRTG~iAl  229 (484)
                       +.+.+++|-|--.     +.--..+++.....+.+|.-++....-|-+.=+.+..+..++.|.. |..-.         
T Consensus       351 -~~~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~istSe~~Is~vI~~~d~~~Av~aLh~~f~~~~---------  420 (600)
T 3l76_A          351 -VEKGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMISTSEVKVSCVIDQRDADRAIAALSNAFGVTL---------  420 (600)
T ss_dssp             -EECSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEEECSSEEEEEEEGGGHHHHHHHHHHHTTCCB---------
T ss_pred             -ecCCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEecCCCEEEEEEcHHHHHHHHHHHHHhhcccC---------
Confidence             4566777776533     2334466676666666665554433444444455555555555543 33110         


Q ss_pred             ecCcCCCCcccccccccCCchhhhhccccccccccccccCCCCCCCCCCCCceeecCCCCCCcccccccccccccccCCC
Q 011491          230 RREKLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLNGNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDP  309 (484)
Q Consensus       230 ~Rg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdvy~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (484)
                        .     +                              ..      ..   -++.|.       ++..   |+-.+.  
T Consensus       421 --t-----~------------------------------~~------~~---~~~~~~-------~~v~---Gia~~~--  442 (600)
T 3l76_A          421 --S-----P------------------------------PK------NQ---TDTSHL-------PAVR---GVALDQ--  442 (600)
T ss_dssp             --C-----C------------------------------CC------CC---CC---C-------CSCC---EEEEEC--
T ss_pred             --C-----C------------------------------cc------cc---cccccc-------CceE---EEEeeC--
Confidence              0     0                              00      00   000010       0111   111111  


Q ss_pred             CCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC--CC--eEEEEEEEeC-ChHHHHHHHHHHhcccceEE
Q 011491          310 SGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK--EG--LSCITTVVPG-TDESIGKLVQLLHKLIDLHE  384 (484)
Q Consensus       310 ~~~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~--~~--iSRiTIVV~g-de~~ieql~kQL~KLidVi~  384 (484)
                       +..+-++. -+.|+||+..||.+.+++.|+|++-+.....+.  .+  ...|+++++. +-+...++++++.+-++-.+
T Consensus       443 -~~a~i~i~-~~~~~~g~~~~if~~La~~~I~vDmI~q~~~~~~~~g~~~~~isftv~~~d~~~a~~~l~~~~~~~~~~~  520 (600)
T 3l76_A          443 -DQAQIAIR-HVPDRPGMAAQLFTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVAEGDSSQAEAILQPLIKDWLDAA  520 (600)
T ss_dssp             -SEEEEEEE-EEESSTTHHHHHHHHHHHTTCCCCEEEEEEECCCSSSSCEEEEEEEEEHHHHHHHHHHHHHHTTTSTTCE
T ss_pred             -CEEEEEEe-cCCCCccHHHHHHHHHHHcCCcEEEEEecccccccCCCccceEEEEEeHHHHHHHHHHHHHHHHhcCCce
Confidence             12233443 589999999999999999999999998887764  24  6789999983 33344555555554443333


Q ss_pred             EeccCCchhHHHhhheeEEecC-----ccchHHHHHHHHHcCcEEEEecCCEEEEEEeCCHHHHHHHHHHhc-cCCc
Q 011491          385 VQDITHLPFAERELILIKIAVN-----TAARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLE-PYGI  455 (484)
Q Consensus       385 V~dlt~~~~V~REL~LIKV~~~-----~~~r~eI~~la~ifrakIVDvs~~si~iE~TG~~~Kidafi~lL~-pyGI  455 (484)
                      +..       ...+++|-|--.     +..-..+++....-+-+|.-++..-+.|-+.=+.+..+..++.|. .|++
T Consensus       521 v~~-------~~~~akVSiVG~GM~~~~Gvaa~~f~aL~~~~Ini~mistSEi~Is~vV~~~~~~~Av~alh~~F~l  590 (600)
T 3l76_A          521 IVV-------NKAIAKVSIVGSGMIGHPGVAAHFFAALAQENINIEMIATSEIKISCVVPQDRGVDALKAAHSAFNL  590 (600)
T ss_dssp             EEE-------ECCEEEEEEECGGGTTCTTHHHHHHHHHHTTTCCCCEEEECSSEEEEEEEGGGHHHHHHHHHHHTTT
T ss_pred             EEE-------eCCeEEEEEECcccccCccHHHHHHHHHHHCCCceEEEEcCCceEEEEEeHHHHHHHHHHHHHHhCC
Confidence            322       233555544311     111245666666666666666655566666556666666666653 4654

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=96.92  E-value=0.0025  Score=59.01  Aligned_cols=67  Identities=22%  Similarity=0.259  Sum_probs=50.4

Q ss_pred             ccceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecC----CCcE--EEEEEeC-ChhHHHHHHHHHhcC
Q 011491           75 SKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV----DKAL--FTIVVSG-TERVLRQVVEQLNKL  142 (484)
Q Consensus        75 ~~~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Te----d~~~--iTIVV~g-de~~veQI~kQL~KL  142 (484)
                      ....+++|.|...|+||++++|+++|+++|.||..+......    ..++  |++.+.. +... ++|.+.|.++
T Consensus        89 ~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~~~~~-~~l~~~l~~~  162 (195)
T 2nyi_A           89 PDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFPFPLY-QEVVTALSRV  162 (195)
T ss_dssp             TTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEEGGGH-HHHHHHHHHH
T ss_pred             CCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcCCCcc-HHHHHHHHHH
Confidence            345679999999999999999999999999999999876443    2344  5555543 2334 7777777644

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=96.92  E-value=0.0024  Score=66.99  Aligned_cols=73  Identities=11%  Similarity=0.194  Sum_probs=57.5

Q ss_pred             cccceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecC--C-CcEEEEEEe-CChhHHHHHHHHHhcCccee
Q 011491           74 ASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV--D-KALFTIVVS-GTERVLRQVVEQLNKLVNVI  146 (484)
Q Consensus        74 ~~~~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Te--d-~~~iTIVV~-gde~~veQI~kQL~KLidVi  146 (484)
                      .+-..+|.|.+.+.|+||||.+|+++|+..|++|+|+...+..  + ...+.|+++ ..+..+++.+++|++|-.|.
T Consensus       354 ~~~~~~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q~~~~~~~~~~~~v~~th~~~e~~~~~~~~~~~~~~~v~  430 (444)
T 3mtj_A          354 EAVRTAYYLRLRAFDRPGVLADITRILADSSISIDAMVQKEPAEGEEQVDIILLTHVTLEKNVNAAIAKIEALDAVA  430 (444)
T ss_dssp             GGCEEEEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEECC------CEEEEEEECSEEHHHHHHHHHHHTTSTTBC
T ss_pred             HHcceeeEEEEEecCcccHHHHHHHHHHhcCCceeEEeecccccCCCCceEEEEeccCCHHHHHHHHHHHhcCCccc
Confidence            3345789999999999999999999999999999999876542  1 123666666 56889999999999986664

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=96.91  E-value=0.0048  Score=63.73  Aligned_cols=73  Identities=15%  Similarity=0.282  Sum_probs=62.8

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEecc
Q 011491          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI  388 (484)
Q Consensus       314 ~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dl  388 (484)
                      .+.|.+.=+|+||++.+|+.+|+..|+||.++.++.  ..+..-+.+-+++....-+.++++|+++-.|++|..+
T Consensus       331 ~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r--~g~~A~~vidvD~~~~~~~~~l~~l~~i~~v~~vr~l  403 (404)
T 1sc6_A          331 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQT--SAQMGYVVIDIEADEDVAEKALQAMKAIPGTIRARLL  403 (404)
T ss_dssp             SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEE--CSSEEEEEEEEECCHHHHHHHHHHHHTSTTEEEEEEC
T ss_pred             cceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccC--CCCEEEEEEEcCCCCCCCHHHHHHHhcCCCeeEEEEe
Confidence            456888889999999999999999999999999998  5677778888887644667999999999999998754

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=96.57  E-value=0.0053  Score=61.50  Aligned_cols=67  Identities=10%  Similarity=0.122  Sum_probs=52.1

Q ss_pred             cceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCCh--hHHHHHHHHHhcC
Q 011491           76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTE--RVLRQVVEQLNKL  142 (484)
Q Consensus        76 ~~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gde--~~veQI~kQL~KL  142 (484)
                      ++++++|++...|+||+.++||+.++.+|.||..++.-.....++  |.+.+..++  ..++++...|+.+
T Consensus        19 ~~~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~~~~~~~L~~~l~~l   89 (302)
T 3o1l_A           19 GMRTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTLPFDLDGFREAFTPI   89 (302)
T ss_dssp             CCCEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGSSSCHHHHHHHHHHH
T ss_pred             ccceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCCCCCHHHHHHHHHHH
Confidence            577899999999999999999999999999999999875444566  556665432  3466666666443

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=96.50  E-value=0.0055  Score=60.82  Aligned_cols=65  Identities=3%  Similarity=-0.067  Sum_probs=49.1

Q ss_pred             ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCC-hhHHHHHHHHHhc
Q 011491           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGT-ERVLRQVVEQLNK  141 (484)
Q Consensus        77 ~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gd-e~~veQI~kQL~K  141 (484)
                      |.+++|++...|+||..++|++.++.+|.||..++.......+.  |.+.++.+ +..++++...++.
T Consensus         6 ~~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~L~~~f~~   73 (286)
T 3n0v_A            6 PDTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPDDFDEAGFRAGLAE   73 (286)
T ss_dssp             -CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCSSCCHHHHHHHHHH
T ss_pred             CCcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCCCCCHHHHHHHHHH
Confidence            55789999999999999999999999999999999774444565  56666543 2345666666543

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=96.50  E-value=0.0061  Score=61.05  Aligned_cols=68  Identities=10%  Similarity=0.179  Sum_probs=52.3

Q ss_pred             CCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh--HHHHHHHHHHh
Q 011491          310 SGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD--ESIGKLVQLLH  377 (484)
Q Consensus       310 ~~~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde--~~ieql~kQL~  377 (484)
                      +|+.+++|++.-.|+||+..+|++.++.+|.||..+........+.--|.+.+..++  ...++|.+.|+
T Consensus        18 ~~~~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~~~~~~~L~~~l~   87 (302)
T 3o1l_A           18 QGMRTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTLPFDLDGFREAFT   87 (302)
T ss_dssp             CCCCEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGSSSCHHHHHHHHH
T ss_pred             cccceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCCCCCHHHHHHHHH
Confidence            688899999999999999999999999999999999887554556655656665322  23555555543

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=96.49  E-value=0.0054  Score=61.11  Aligned_cols=67  Identities=12%  Similarity=0.193  Sum_probs=50.3

Q ss_pred             cceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCC----hhHHHHHHHHHhcC
Q 011491           76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGT----ERVLRQVVEQLNKL  142 (484)
Q Consensus        76 ~~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gd----e~~veQI~kQL~KL  142 (484)
                      .|++++|++...|+||..++|++.++.+|.||..++.......+.  |.+.+..+    ...++++...|+.+
T Consensus         7 ~~~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~~~L~~~f~~l   79 (292)
T 3lou_A            7 RPHQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREFEPI   79 (292)
T ss_dssp             -CCEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----CCHHHHHHHHHHH
T ss_pred             CCCcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCCCHHHHHHHHHHH
Confidence            356799999999999999999999999999999999774444565  55555544    23466666666443

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=96.45  E-value=0.0043  Score=65.80  Aligned_cols=71  Identities=17%  Similarity=0.279  Sum_probs=57.7

Q ss_pred             EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC--cEEEEEEeCChhHHHHHHHHHhcCcceeEEEec
Q 011491           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK--ALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI  151 (484)
Q Consensus        79 khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~--~~iTIVV~gde~~veQI~kQL~KLidVikV~dl  151 (484)
                      -|+|-+...|+||++.+|+.++...|+||..+.++.....  +.|.|.++.  ..-+.+.++|.++-+|.+|..+
T Consensus       454 ~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~--~~~~~~l~~l~~~~~i~~v~~v  526 (529)
T 1ygy_A          454 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQ--DVPDDVRTAIAAAVDAYKLEVV  526 (529)
T ss_dssp             SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESS--CCCHHHHHHHHHHHTEEEEEEE
T ss_pred             ccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECC--CCCHHHHHHHhcCCCccEEEEE
Confidence            4899999999999999999999999999999999987644  357777763  3345677777787888777654

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=96.39  E-value=0.01  Score=53.42  Aligned_cols=129  Identities=18%  Similarity=0.238  Sum_probs=78.2

Q ss_pred             EEEEEE-EcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEeCChhHHHHHHHHHhcCcceeEEEecCCchh
Q 011491           80 HTISVF-VGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPH  156 (484)
Q Consensus        80 htISil-VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~--~iTIVV~gde~~veQI~kQL~KLidVikV~dlt~~~~  156 (484)
                      ..|++. +.|+||.+.+|...|++.|+||+.++.+.+.+ +  .++++++.++  .++..+.|+++..=+...    .-.
T Consensus        26 ~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~-g~~~isf~v~~~~--~~~a~~~l~~~~~~l~~~----~i~   98 (167)
T 2re1_A           26 ARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSE-GTTDFSFTVPRGD--YKQTLEILSERQDSIGAA----SID   98 (167)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC-----CEEEEEEEECGGG--HHHHHHHHHHSSTTTTCS----EEE
T ss_pred             EEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCC-CeeEEEEEEechH--HHHHHHHHHHHHHHcCCc----eEE
Confidence            456666 79999999999999999999999999876544 4  4888887533  233334444332111110    112


Q ss_pred             hhhhheeEEEeCCC-----CCHHHHHHHHHhcCcEE--EEecCCEEEEEEeCChhHHHHHHHHhc-cCC
Q 011491          157 VERELMLIKLNGDT-----STWPEIMWLVDIFRAKV--VDISEHALTIEVTGDPGKMVAVQRNLS-KFG  217 (484)
Q Consensus       157 V~RELaLiKV~~~~-----~~r~eI~~l~~~FrAkI--VDvs~~sl~iE~TG~~~KIdafi~~L~-~fG  217 (484)
                      +.+.++++-|-...     .--..+++....++..|  +..+..++.+=+  +.+..+..++.|. .|+
T Consensus        99 ~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~istse~~is~vv--~~~d~~~av~~Lh~~f~  165 (167)
T 2re1_A           99 GDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMISTSEIKVSVLI--DEKYMELATRVLHKAFN  165 (167)
T ss_dssp             EESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEEECSSEEEEEE--EGGGHHHHHHHHHHHTT
T ss_pred             ecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEEcccCEEEEEE--eHHHHHHHHHHHHHHhc
Confidence            45667888876543     33457888888877777  444555555555  3344444455443 354

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=96.35  E-value=0.0077  Score=59.81  Aligned_cols=64  Identities=13%  Similarity=0.201  Sum_probs=49.3

Q ss_pred             eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCCh--hHHHHHHHHHhc
Q 011491           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTE--RVLRQVVEQLNK  141 (484)
Q Consensus        78 ~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gde--~~veQI~kQL~K  141 (484)
                      .+++|++...|+||..++|++.++.+|.||..++.-.+...+.  |.+.++.++  ..++++...|+.
T Consensus         5 ~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~L~~~f~~   72 (288)
T 3obi_A            5 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGV   72 (288)
T ss_dssp             CEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSCCCCHHHHHHHHHH
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCCCCCHHHHHHHHHH
Confidence            3689999999999999999999999999999999865555565  555555332  356677666644

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=96.35  E-value=0.0095  Score=53.68  Aligned_cols=114  Identities=10%  Similarity=0.161  Sum_probs=71.5

Q ss_pred             EEEEEE-EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh-HHHHHHHHHHhcccceEEEeccCCch
Q 011491          315 HTLSML-VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD-ESIGKLVQLLHKLIDLHEVQDITHLP  392 (484)
Q Consensus       315 htLsil-VeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde-~~ieql~kQL~KLidVi~V~dlt~~~  392 (484)
                      ..|++. +.|+||.+.+|...|++.|+||+.++.+.+.+ +...++++++.++ +...++.+++.+-+....|       
T Consensus        26 ~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~-g~~~isf~v~~~~~~~a~~~l~~~~~~l~~~~i-------   97 (167)
T 2re1_A           26 ARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSE-GTTDFSFTVPRGDYKQTLEILSERQDSIGAASI-------   97 (167)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC-----CEEEEEEEECGGGHHHHHHHHHHSSTTTTCSEE-------
T ss_pred             EEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCC-CeeEEEEEEechHHHHHHHHHHHHHHHcCCceE-------
Confidence            456666 79999999999999999999999999876554 5667999998532 2344444444333332111       


Q ss_pred             hHHHhhheeEEecCc-----cchHHHHHHHHHcCcEE--EEecCCEEEEEE
Q 011491          393 FAERELILIKIAVNT-----AARRDVLDIAKIFRARA--VDVSDHTITLEL  436 (484)
Q Consensus       393 ~V~REL~LIKV~~~~-----~~r~eI~~la~ifrakI--VDvs~~si~iE~  436 (484)
                      .+.+.++++-|-...     .--..+++....++..|  +..+..++.+=+
T Consensus        98 ~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~istse~~is~vv  148 (167)
T 2re1_A           98 DGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMISTSEIKVSVLI  148 (167)
T ss_dssp             EEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEEECSSEEEEEE
T ss_pred             EecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEEcccCEEEEEE
Confidence            123456677765432     22356777777777777  444555555554

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=96.31  E-value=0.016  Score=60.37  Aligned_cols=73  Identities=15%  Similarity=0.274  Sum_probs=61.0

Q ss_pred             EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhcCcceeEEEec
Q 011491           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI  151 (484)
Q Consensus        79 khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~KLidVikV~dl  151 (484)
                      .|.|.+.=+|.||+|.+|+.+|+..|+||+...-...++-++..+=+++....-+.+.++|+++-.|++|..+
T Consensus       343 ~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y~~~d~~~~~~~~~~~~~~l~~~~~~~~~r~~  415 (416)
T 3k5p_A          343 GTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGYLVMEADGVGEASDAVLQEIREIPGTIRARLL  415 (416)
T ss_dssp             SEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEECCCHHHHHHHHHHHHTSTTEEEEEEE
T ss_pred             ceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEEEEEEecCCCCCcHHHHHHHHhCCCEEEEEEe
Confidence            5789999999999999999999999999999987666665665555653355678999999999999998754

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=96.30  E-value=0.0069  Score=64.21  Aligned_cols=73  Identities=14%  Similarity=0.179  Sum_probs=60.2

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEecc
Q 011491          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI  388 (484)
Q Consensus       314 ~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dl  388 (484)
                      .|+|-+...|+||++.+|+.++...|+||.++.++.....+..=|.|.++..  .-+.+.++|.++.+|.+|..+
T Consensus       454 ~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~~--~~~~~l~~l~~~~~i~~v~~v  526 (529)
T 1ygy_A          454 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQD--VPDDVRTAIAAAVDAYKLEVV  526 (529)
T ss_dssp             SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESSC--CCHHHHHHHHHHHTEEEEEEE
T ss_pred             ccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECCC--CCHHHHHHHhcCCCccEEEEE
Confidence            3899999999999999999999999999999999998877777777777733  335566677777777777654

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=96.20  E-value=0.0092  Score=59.22  Aligned_cols=62  Identities=15%  Similarity=0.167  Sum_probs=46.1

Q ss_pred             eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChhHHHHHHHHH
Q 011491           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQL  139 (484)
Q Consensus        78 ~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gde~~veQI~kQL  139 (484)
                      ++++|++...|+||+.++|++.++.+|.||..++.-.+...++  |.+.+..+...++++...|
T Consensus         6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~L~~~f   69 (287)
T 3nrb_A            6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIPVAGVNDFNSAF   69 (287)
T ss_dssp             TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCC---CHHHHHH
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcCCCCHHHHHHHH
Confidence            4689999999999999999999999999999999865555566  5555554332333444444

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=96.15  E-value=0.012  Score=58.69  Aligned_cols=69  Identities=16%  Similarity=0.231  Sum_probs=48.5

Q ss_pred             CCCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCC----hHHHHHHHHHHh
Q 011491          309 PSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT----DESIGKLVQLLH  377 (484)
Q Consensus       309 ~~~~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd----e~~ieql~kQL~  377 (484)
                      +..+++++|++.-.|+||+..+|++.++.+|.||..+........+.--|.+.+..+    ....++|...|+
T Consensus         5 ~~~~~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~~~L~~~f~   77 (292)
T 3lou_A            5 PQRPHQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREFE   77 (292)
T ss_dssp             ---CCEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----CCHHHHHHHHH
T ss_pred             cCCCCcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCCCHHHHHHHHH
Confidence            345668999999999999999999999999999999988754445554455554433    223555555443

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=96.09  E-value=0.041  Score=55.43  Aligned_cols=139  Identities=14%  Similarity=0.170  Sum_probs=85.7

Q ss_pred             eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChh--HHHHHHHHHhcCc---c-eeEEE
Q 011491           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTER--VLRQVVEQLNKLV---N-VIKVE  149 (484)
Q Consensus        78 ~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gde~--~veQI~kQL~KLi---d-VikV~  149 (484)
                      ++++|++.-.|+||+.++|++.++++|.||..+....  ..+.  |.+.+..++.  .++++.+.|..+-   . -+++.
T Consensus        11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~--~~~~f~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~   88 (415)
T 3p96_A           11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVV--IRHRLTLGVLVCCPADVADGPALRHDVEAAIRKVGLDVSIE   88 (415)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEE--ETTEEEEEEEEEECHHHHTSHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEE--ECCEeEEEEEEEecCCcCCHHHHHHHHHHHHHHcCeEEEEE
Confidence            5789999999999999999999999999999998764  3455  5555665443  3467777776552   2 24455


Q ss_pred             ecCCchhhh-hhheeEEEeCCC---CCHHHHHHHHHhcCcEEEEecCCE------EEEEEeCCh---hHHH-HHHHHhcc
Q 011491          150 DISNEPHVE-RELMLIKLNGDT---STWPEIMWLVDIFRAKVVDISEHA------LTIEVTGDP---GKMV-AVQRNLSK  215 (484)
Q Consensus       150 dlt~~~~V~-RELaLiKV~~~~---~~r~eI~~l~~~FrAkIVDvs~~s------l~iE~TG~~---~KId-afi~~L~~  215 (484)
                      +.+...... ....++-+-...   ..-.+|..+...++.+|-++..-+      +-+.+.+++   +.+. ++.+++..
T Consensus        89 ~~~~~~~~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~~~~~~~~v~~~~~~~~~l~~~l~~l~~~  168 (415)
T 3p96_A           89 RSDDVPIIREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGLELRVSVPPGADEALRTALNRVSSE  168 (415)
T ss_dssp             ECSSSCSSCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSSSEEEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             ECCcccccCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCCceEEEEEeeCCCCCHHHHHHHHHHHhhh
Confidence            544432222 233444443332   233456666666678888775544      335555654   3333 34444555


Q ss_pred             CCc
Q 011491          216 FGI  218 (484)
Q Consensus       216 fGI  218 (484)
                      +++
T Consensus       169 ~~v  171 (415)
T 3p96_A          169 EHV  171 (415)
T ss_dssp             HTC
T ss_pred             cCc
Confidence            664

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=96.05  E-value=0.014  Score=58.02  Aligned_cols=64  Identities=14%  Similarity=0.156  Sum_probs=47.3

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe--CChHHHHHHHHHHh
Q 011491          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP--GTDESIGKLVQLLH  377 (484)
Q Consensus       314 ~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~--gde~~ieql~kQL~  377 (484)
                      +++|++.-.|+||+..+|++.++.+|.||..+....+...+.--|.+.+.  +....+++|...|+
T Consensus         6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~L~~~f~   71 (288)
T 3obi_A            6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFG   71 (288)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSCCCCHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCCCCCHHHHHHHHH
Confidence            58999999999999999999999999999999986555555544555444  22224555555543

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=95.99  E-value=0.016  Score=57.40  Aligned_cols=65  Identities=12%  Similarity=0.032  Sum_probs=47.6

Q ss_pred             ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCC-hHHHHHHHHHH
Q 011491          312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT-DESIGKLVQLL  376 (484)
Q Consensus       312 ~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd-e~~ieql~kQL  376 (484)
                      |.+++|++...|+||+.++||+.++.+|.||..++.......+.--|.+.++.+ +...++|...|
T Consensus         6 ~~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~L~~~f   71 (286)
T 3n0v_A            6 PDTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPDDFDEAGFRAGL   71 (286)
T ss_dssp             -CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCSSCCHHHHHHHH
T ss_pred             CCcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCCCCCHHHHHHHH
Confidence            456899999999999999999999999999999988754455655555555532 12344444444

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=95.80  E-value=0.021  Score=56.64  Aligned_cols=64  Identities=16%  Similarity=0.181  Sum_probs=48.2

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHH
Q 011491          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLL  376 (484)
Q Consensus       313 ~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL  376 (484)
                      ++++|++.-.|+||+..+|++.++.+|.||..+....+...+.--|.+.+..+....++|...|
T Consensus         6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~L~~~f   69 (287)
T 3nrb_A            6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIPVAGVNDFNSAF   69 (287)
T ss_dssp             TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCC---CHHHHHH
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcCCCCHHHHHHHH
Confidence            4689999999999999999999999999999999875556666666666664332333444444

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=95.62  E-value=0.044  Score=57.12  Aligned_cols=73  Identities=19%  Similarity=0.277  Sum_probs=59.3

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEecc
Q 011491          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI  388 (484)
Q Consensus       314 ~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dl  388 (484)
                      .|-|.+.=+|.||+|.+|+.+|+..|+||+.+.-....+-++  ..+=+++..+.-+.+.++|+++-.|++|..+
T Consensus       343 ~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y--~~~d~~~~~~~~~~~~~~l~~~~~~~~~r~~  415 (416)
T 3k5p_A          343 GTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGY--LVMEADGVGEASDAVLQEIREIPGTIRARLL  415 (416)
T ss_dssp             SEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEE--EEEEECCCHHHHHHHHHHHHTSTTEEEEEEE
T ss_pred             ceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEE--EEEEecCCCCCcHHHHHHHHhCCCEEEEEEe
Confidence            478999999999999999999999999999988665544443  4444443356778999999999999998754

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=95.40  E-value=0.056  Score=54.39  Aligned_cols=141  Identities=14%  Similarity=0.107  Sum_probs=85.1

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChH--HHHHHHHHHhcc---cce-EEEe
Q 011491          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDE--SIGKLVQLLHKL---IDL-HEVQ  386 (484)
Q Consensus       313 ~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~--~ieql~kQL~KL---idV-i~V~  386 (484)
                      .+++|++.-.|+||+.++|++.++++|.||..+.....  .+.--|.+.+..++.  ..++|.+.|..+   .++ +++.
T Consensus        11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~--~~~f~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~   88 (415)
T 3p96_A           11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVI--RHRLTLGVLVCCPADVADGPALRHDVEAAIRKVGLDVSIE   88 (415)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEE--TTEEEEEEEEEECHHHHTSHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEE--CCEeEEEEEEEecCCcCCHHHHHHHHHHHHHHcCeEEEEE
Confidence            46899999999999999999999999999999888653  455555555655443  336666666554   222 3455


Q ss_pred             ccCCchhHH-HhhheeEEecC---ccchHHHHHHHHHcCcEEEEecCCE------EEEEEeCCH---HHHH-HHHHHhcc
Q 011491          387 DITHLPFAE-RELILIKIAVN---TAARRDVLDIAKIFRARAVDVSDHT------ITLELTGDL---NKII-ALQRLLEP  452 (484)
Q Consensus       387 dlt~~~~V~-REL~LIKV~~~---~~~r~eI~~la~ifrakIVDvs~~s------i~iE~TG~~---~Kid-afi~lL~p  452 (484)
                      +.+...... +...++-+-..   +..-.+|.++...++.+|-+...-+      +-+.+.+.+   ..+. ++.+++..
T Consensus        89 ~~~~~~~~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~~~~~~~~v~~~~~~~~~l~~~l~~l~~~  168 (415)
T 3p96_A           89 RSDDVPIIREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGLELRVSVPPGADEALRTALNRVSSE  168 (415)
T ss_dssp             ECSSSCSSCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSSSEEEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             ECCcccccCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCCceEEEEEeeCCCCCHHHHHHHHHHHhhh
Confidence            444332111 12333333322   2223456666666778888775544      335555554   3333 34455566


Q ss_pred             CCc
Q 011491          453 YGI  455 (484)
Q Consensus       453 yGI  455 (484)
                      +++
T Consensus       169 ~~v  171 (415)
T 3p96_A          169 EHV  171 (415)
T ss_dssp             HTC
T ss_pred             cCc
Confidence            665

>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}

Probab=95.05  E-value=0.15  Score=50.59  Aligned_cols=73  Identities=15%  Similarity=0.241  Sum_probs=59.9

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEeC--ChHHHHHHHHHHhcccceEEE
Q 011491          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPG--TDESIGKLVQLLHKLIDLHEV  385 (484)
Q Consensus       313 ~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~-~~iSRiTIVV~g--de~~ieql~kQL~KLidVi~V  385 (484)
                      .|-+|.+.+.|+||.|.++.+.|+.||+|+..|.--|+.. ++-..+-|-+.|  ++..+.+.++.|++.-.-+++
T Consensus       199 ~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~eg~~~d~~v~~aL~~L~~~~~~~ki  274 (283)
T 2qmx_A          199 QKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFIGHREDQNVHNALENLREFATMVKV  274 (283)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEESCTTSHHHHHHHHHHHTTCSEEEE
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEecCCCcHHHHHHHHHHHHhcCeEEE
Confidence            4667888889999999999999999999999999988765 466677777776  456799999999987655444

>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}

Probab=94.68  E-value=0.16  Score=50.39  Aligned_cols=72  Identities=21%  Similarity=0.356  Sum_probs=57.3

Q ss_pred             ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-c-E-EEEEEeC--ChhHHHHHHHHHhcCcceeEE
Q 011491           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-A-L-FTIVVSG--TERVLRQVVEQLNKLVNVIKV  148 (484)
Q Consensus        77 ~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~-~-iTIVV~g--de~~veQI~kQL~KLidVikV  148 (484)
                      -.|-.|.+.+.|+||.|.++.+.|+.||+|+..|---|+... + + +-|-+.|  ++..+++.++.|++.-.-+++
T Consensus       198 ~~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~eg~~~d~~v~~aL~~L~~~~~~~ki  274 (283)
T 2qmx_A          198 RQKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFIGHREDQNVHNALENLREFATMVKV  274 (283)
T ss_dssp             EEEEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEESCTTSHHHHHHHHHHHTTCSEEEE
T ss_pred             CceEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEecCCCcHHHHHHHHHHHHhcCeEEE
Confidence            357788888899999999999999999999999998887654 3 3 5555655  567789999999887654444

>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}

Probab=94.56  E-value=0.13  Score=51.80  Aligned_cols=73  Identities=21%  Similarity=0.356  Sum_probs=58.7

Q ss_pred             CCCceEEEEEEEEe-CchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEeC--ChHHHHHHHHHHhcccc
Q 011491          309 PSGLRSHTLSMLVN-NTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPG--TDESIGKLVQLLHKLID  381 (484)
Q Consensus       309 ~~~~~~htLsilVe-N~pGVL~RVtglFsRRGyNIeSLtVg~te~-~~iSRiTIVV~g--de~~ieql~kQL~KLid  381 (484)
                      +.+-.|-+|.+.+. |+||.|.++.+.|+.||+|+..|.--|+.. ++-..+-|=+.|  ++..+.+.++.|++.-.
T Consensus       196 ~~~~~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~~d~~v~~aL~~L~~~~~  272 (313)
T 3mwb_A          196 RTGADKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGHATDSRVADALAGLHRISP  272 (313)
T ss_dssp             CCSSEEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEESCTTSHHHHHHHHHHHHHCT
T ss_pred             CCCCCeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEeCCCCcHHHHHHHHHHHHhcC
Confidence            34556778888884 999999999999999999999999888754 456677777876  56678888888887643

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=94.46  E-value=0.1  Score=46.80  Aligned_cols=122  Identities=13%  Similarity=0.107  Sum_probs=71.7

Q ss_pred             EeCchhHHHHHHHHHhccCceeeeeeeeecC-CCCeEEEEEEEeCCh-HHHHHHHHHHhcccceEEEeccCCchhHHHhh
Q 011491          321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAE-KEGLSCITTVVPGTD-ESIGKLVQLLHKLIDLHEVQDITHLPFAEREL  398 (484)
Q Consensus       321 VeN~pGVL~RVtglFsRRGyNIeSLtVg~te-~~~iSRiTIVV~gde-~~ieql~kQL~KLidVi~V~dlt~~~~V~REL  398 (484)
                      +.|+||++.||.+.+++.|+||+-++.+.+. +.+...++++++.++ +...++.+++.+-... .+.       +.+.+
T Consensus        24 ~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d~~~a~~~L~~~~~~~~~-~v~-------~~~~~   95 (167)
T 2dt9_A           24 IPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDFAQEALEALEPVLAEIGG-EAI-------LRPDI   95 (167)
T ss_dssp             EECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGGHHHHHHHHHHHHHHHCC-EEE-------EECSE
T ss_pred             CCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHHHHHHHHHHHHHHHHhCC-cEE-------EeCCE
Confidence            4899999999999999999999999887652 345667999998433 2333444443322332 332       23456


Q ss_pred             heeEEecCccc-h----HHHHHHHHHcCcEE--EEecCCEEEEEEeCCHHHHHHHHHHhcc
Q 011491          399 ILIKIAVNTAA-R----RDVLDIAKIFRARA--VDVSDHTITLELTGDLNKIIALQRLLEP  452 (484)
Q Consensus       399 ~LIKV~~~~~~-r----~eI~~la~ifrakI--VDvs~~si~iE~TG~~~Kidafi~lL~p  452 (484)
                      +++-|-...-. +    ..+++.....+-+|  +.-++..+  -+.=+.+..+..++.|..
T Consensus        96 a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is~Se~~i--s~vv~~~d~~~Av~~Lh~  154 (167)
T 2dt9_A           96 AKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIATSEVRI--SVIIPAEYAEAALRAVHQ  154 (167)
T ss_dssp             EEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEEECSSEE--EEEEEGGGHHHHHHHHHH
T ss_pred             EEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEEccCCEE--EEEEeHHHHHHHHHHHHH
Confidence            67766543211 2    34555555545555  44344433  333344555555665543

>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}

Probab=94.43  E-value=0.17  Score=50.96  Aligned_cols=72  Identities=21%  Similarity=0.345  Sum_probs=55.3

Q ss_pred             cceEEEEEEEE-cCchhHHHHHHHHHhccCceeeeEeeeecCCC--cE-EEEEEeC--ChhHHHHHHHHHhcCcceeE
Q 011491           76 KVKRHTISVFV-GDESGIINRIAGVFARRGYNIESLAVGLNVDK--AL-FTIVVSG--TERVLRQVVEQLNKLVNVIK  147 (484)
Q Consensus        76 ~~~khtISilV-eN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~--~~-iTIVV~g--de~~veQI~kQL~KLidVik  147 (484)
                      +..|-.|.+.+ +|+||.|.++.+.|+.||+|+..|---|+...  .+ +-|-+.|  ++..+.+.++.|++.-.-++
T Consensus       198 ~~~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~~d~~v~~aL~~L~~~~~~~k  275 (313)
T 3mwb_A          198 GADKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGHATDSRVADALAGLHRISPATR  275 (313)
T ss_dssp             SSEEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEESCTTSHHHHHHHHHHHHHCTTCE
T ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEeCCCCcHHHHHHHHHHHHhcCcEE
Confidence            44577888888 49999999999999999999999988887654  23 5555655  56778888888887644333

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=94.07  E-value=0.2  Score=46.05  Aligned_cols=124  Identities=10%  Similarity=0.065  Sum_probs=72.8

Q ss_pred             EEeCchhHHHHHHHHHhccCceeeeeeeeecC-CCCeEEEEEEEeCCh-HHHHHHHHHHhcccceEEEeccCCchhHHHh
Q 011491          320 LVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE-KEGLSCITTVVPGTD-ESIGKLVQLLHKLIDLHEVQDITHLPFAERE  397 (484)
Q Consensus       320 lVeN~pGVL~RVtglFsRRGyNIeSLtVg~te-~~~iSRiTIVV~gde-~~ieql~kQL~KLidVi~V~dlt~~~~V~RE  397 (484)
                      -+.|+||++.||.+.|++.|+||+-++...++ +.+...++++++.++ +...++++++.+-+...+|..       ...
T Consensus        23 ~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~~~~a~~~L~~~~~el~~~~v~~-------~~~   95 (181)
T 3s1t_A           23 GLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGPAAVEKLDSLRNEIGFSQLLY-------DDH   95 (181)
T ss_dssp             EEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTTHHHHHHHHHHTHHHHCCSEEEE-------ESC
T ss_pred             cCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhHHHHHHHHHHHHHHhcCcceEEE-------eCC
Confidence            47899999999999999999999999876655 367788999998653 334444444332222222221       234


Q ss_pred             hheeEEecCc-cc----hHHHHHHHHHcCcEEEEecCCEEEEEEeCCHHHHHHHHHHh
Q 011491          398 LILIKIAVNT-AA----RRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLL  450 (484)
Q Consensus       398 L~LIKV~~~~-~~----r~eI~~la~ifrakIVDvs~~si~iE~TG~~~Kidafi~lL  450 (484)
                      +++|-|--.. ..    -..+++.....+-+|.-++...+.|-+.=+.+..+..++.|
T Consensus        96 va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~IstSei~Is~vV~~~d~~~Av~aL  153 (181)
T 3s1t_A           96 IGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELISTSEIRISVLCRDTELDKAVVAL  153 (181)
T ss_dssp             EEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEEETTEEEEEEEGGGHHHHHHHH
T ss_pred             EEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEEcCCCEEEEEEeHHHHHHHHHHH
Confidence            6666653221 12    23455555555555544443333333444444444444444

>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3

Probab=94.03  E-value=0.14  Score=50.56  Aligned_cols=70  Identities=13%  Similarity=0.211  Sum_probs=55.7

Q ss_pred             eEEEEEEEE---cCchhHHHHHHHHHhccCceeeeEeeeecCCC-c-E---EEEEEeCChhHHHHHHHHHhcCcceeEE
Q 011491           78 KRHTISVFV---GDESGIINRIAGVFARRGYNIESLAVGLNVDK-A-L---FTIVVSGTERVLRQVVEQLNKLVNVIKV  148 (484)
Q Consensus        78 ~khtISilV---eN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~-~---iTIVV~gde~~veQI~kQL~KLidVikV  148 (484)
                      .|-.|.+.+   .|+||.|.++.+.|+.||+|+..|---|+... + +   +.+. +-++..+.+.+++|++.-.-+++
T Consensus       185 ~ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e-~~~d~~v~~aL~~L~~~~~~~ki  262 (267)
T 2qmw_A          185 NATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD-SAITTDIKKVIAILETLDFKVEM  262 (267)
T ss_dssp             SCSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES-CCSCHHHHHHHHHHHHTTEEEEE
T ss_pred             CeEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEe-cCCcHHHHHHHHHHHHhcCeEEE
Confidence            466788888   89999999999999999999999998887654 2 2   4444 55677889999999887655444

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=94.01  E-value=0.52  Score=42.80  Aligned_cols=129  Identities=18%  Similarity=0.227  Sum_probs=76.9

Q ss_pred             EEEE-EEcCchhHHHHHHHHHhccCceeeeEeeeecC--CC-cEEEEEEeCChhHHHHHHHHHhcCcceeEEEecCCchh
Q 011491           81 TISV-FVGDESGIINRIAGVFARRGYNIESLAVGLNV--DK-ALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPH  156 (484)
Q Consensus        81 tISi-lVeN~pGVL~RIagLFsRRGyNIeSLtVg~Te--d~-~~iTIVV~gde~~veQI~kQL~KLidVikV~dlt~~~~  156 (484)
                      .|++ .+.|+||.+.+|...|++.|+||+.++.+...  +. ..+++++..++  .++..+.|+++..=+...    .-.
T Consensus        17 ~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~d--~~~a~~~l~~~~~~~~~~----~v~   90 (178)
T 2dtj_A           17 KVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRSD--GRRAMEILKKLQVQGNWT----NVL   90 (178)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHHH--HHHHHHHHHTTTTTTTCS----EEE
T ss_pred             EEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEcccc--HHHHHHHHHHHHHhcCCC----eEE
Confidence            4555 46999999999999999999999999876332  22 23777776433  344445555432211111    112


Q ss_pred             hhhhheeEEEeCCCC-CH----HHHHHHHHhcCcEE--EEecCCEEEEEEeCChhHHHHHHHHhcc-CC
Q 011491          157 VERELMLIKLNGDTS-TW----PEIMWLVDIFRAKV--VDISEHALTIEVTGDPGKMVAVQRNLSK-FG  217 (484)
Q Consensus       157 V~RELaLiKV~~~~~-~r----~eI~~l~~~FrAkI--VDvs~~sl~iE~TG~~~KIdafi~~L~~-fG  217 (484)
                      +.+++++|-|-.... .+    ..+++.....+-+|  +.-++.++.+=+  +.+..+..++.|.. |+
T Consensus        91 ~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~istSe~~Is~vV--~~~d~~~Av~~Lh~~F~  157 (178)
T 2dtj_A           91 YDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELISTSEIRISVLI--REDDLDAAARALHEQFQ  157 (178)
T ss_dssp             EESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEEETTEEEEEE--EGGGHHHHHHHHHHHHT
T ss_pred             EeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEEcCCCeEEEEE--eHHHHHHHHHHHHHHHc
Confidence            456788888865432 22    25555555555566  444555544444  55666666666553 54

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=93.80  E-value=0.15  Score=46.95  Aligned_cols=126  Identities=13%  Similarity=0.137  Sum_probs=73.5

Q ss_pred             EEcCchhHHHHHHHHHhccCceeeeEeeeecC-CCcE--EEEEEeCCh-hHHHHHHHHHhcCcceeEEEecCCchhhhhh
Q 011491           85 FVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKAL--FTIVVSGTE-RVLRQVVEQLNKLVNVIKVEDISNEPHVERE  160 (484)
Q Consensus        85 lVeN~pGVL~RIagLFsRRGyNIeSLtVg~Te-d~~~--iTIVV~gde-~~veQI~kQL~KLidVikV~dlt~~~~V~RE  160 (484)
                      -+.|+||.+.||.+.|++.|+||+.++...++ +.+.  ++++++.++ ....++.+++.+-+..-+|.       +.+.
T Consensus        23 ~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~~~~a~~~L~~~~~el~~~~v~-------~~~~   95 (181)
T 3s1t_A           23 GLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGPAAVEKLDSLRNEIGFSQLL-------YDDH   95 (181)
T ss_dssp             EEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTTHHHHHHHHHHTHHHHCCSEEE-------EESC
T ss_pred             cCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhHHHHHHHHHHHHHHhcCcceEE-------EeCC
Confidence            47899999999999999999999999876554 2444  888887544 22333333332212222222       3456


Q ss_pred             heeEEEeCCC-CC----HHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc-CC
Q 011491          161 LMLIKLNGDT-ST----WPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK-FG  217 (484)
Q Consensus       161 LaLiKV~~~~-~~----r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~-fG  217 (484)
                      +++|-|--.. .+    -..+++.....+-+|.-++...+.|-+.=+.+..+..++.|.. |+
T Consensus        96 va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~IstSei~Is~vV~~~d~~~Av~aLH~~f~  158 (181)
T 3s1t_A           96 IGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELISTSEIRISVLCRDTELDKAVVALHEAFG  158 (181)
T ss_dssp             EEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEEETTEEEEEEEGGGHHHHHHHHHHHHT
T ss_pred             EEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEEcCCCEEEEEEeHHHHHHHHHHHHHHHc
Confidence            7777764332 12    2345555555566655554333444444455555555555543 54

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=93.67  E-value=0.15  Score=46.42  Aligned_cols=125  Identities=14%  Similarity=0.223  Sum_probs=74.4

Q ss_pred             EEEE-EEeCchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEeCChHHHHHHHHHHhcc---cceEEEeccCC
Q 011491          316 TLSM-LVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPGTDESIGKLVQLLHKL---IDLHEVQDITH  390 (484)
Q Consensus       316 tLsi-lVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~-~~iSRiTIVV~gde~~ieql~kQL~KL---idVi~V~dlt~  390 (484)
                      .|++ .+.|+||.+.+|...+++.|+||+-++.+.... .+-..|++++..+  ..++..+.|+++   .....+     
T Consensus        17 ~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~--d~~~a~~~l~~~~~~~~~~~v-----   89 (178)
T 2dtj_A           17 KVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRS--DGRRAMEILKKLQVQGNWTNV-----   89 (178)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHH--HHHHHHHHHHTTTTTTTCSEE-----
T ss_pred             EEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEccc--cHHHHHHHHHHHHHhcCCCeE-----
Confidence            4455 468999999999999999999999998764322 2356788888743  234444555543   222222     


Q ss_pred             chhHHHhhheeEEecCcc-ch----HHHHHHHHHcCcEE--EEecCCEEEEEEeCCHHHHHHHHHHhc
Q 011491          391 LPFAERELILIKIAVNTA-AR----RDVLDIAKIFRARA--VDVSDHTITLELTGDLNKIIALQRLLE  451 (484)
Q Consensus       391 ~~~V~REL~LIKV~~~~~-~r----~eI~~la~ifrakI--VDvs~~si~iE~TG~~~Kidafi~lL~  451 (484)
                        .+..++++|-|-.... .+    ..+++.....+-+|  +.-++..+.+=+  +.+..+..++.|.
T Consensus        90 --~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~istSe~~Is~vV--~~~d~~~Av~~Lh  153 (178)
T 2dtj_A           90 --LYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELISTSEIRISVLI--REDDLDAAARALH  153 (178)
T ss_dssp             --EEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEEETTEEEEEE--EGGGHHHHHHHHH
T ss_pred             --EEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEEcCCCeEEEEE--eHHHHHHHHHHHH
Confidence              2235677887754321 12    35555555555555  444555544444  5555555555444

>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}

Probab=93.60  E-value=0.22  Score=44.22  Aligned_cols=110  Identities=8%  Similarity=0.109  Sum_probs=67.1

Q ss_pred             eCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEeccCCchhHHHhhhee
Q 011491          322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFAERELILI  401 (484)
Q Consensus       322 eN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dlt~~~~V~REL~LI  401 (484)
                      .++||++.|+...|++.|+||+-++.++.      +++++++.++ .++++++.|.+.   ..|.       +.+.+++|
T Consensus        29 ~~~~g~~~~if~~La~~~I~vd~I~~s~~------~Isf~v~~~~-~~~~il~~l~~~---~~v~-------~~~~~a~v   91 (157)
T 3mah_A           29 LLSWHFMRKLFEIFEFYQEPVDMVATSEV------GVSLTIDNDK-NLPDIVRALSDI---GDVT-------VDKDMVII   91 (157)
T ss_dssp             SCHHHHHHHHHHHHHHTTCCCSCEECCSS------EEEEEESCCT-THHHHHHHHTTT---EEEE-------EEEEEEEE
T ss_pred             CCchhHHHHHHHHHHHcCCCEEEEEecCC------EEEEEECChH-HHHHHHHHHhcc---CeEE-------EeCCeEEE
Confidence            47899999999999999999999986542      7999998554 678888888773   2222       12346777


Q ss_pred             EEecCc-----cchHHHHHHHHHcCcEEEEec--CCEEEEEEeCCHHHHHHHHHHh
Q 011491          402 KIAVNT-----AARRDVLDIAKIFRARAVDVS--DHTITLELTGDLNKIIALQRLL  450 (484)
Q Consensus       402 KV~~~~-----~~r~eI~~la~ifrakIVDvs--~~si~iE~TG~~~Kidafi~lL  450 (484)
                      -|--..     ..-..+++...  +-.|.-++  .....+.+.=+.+..+..++.|
T Consensus        92 svvG~gm~~~~gv~a~~f~aL~--~Ini~~isqg~Se~~is~vv~~~d~~~a~~~L  145 (157)
T 3mah_A           92 CIVGDMEWDNVGFEARIINALK--GVPVRMISYGGSNYNVSVLVKAEDKKKALIAL  145 (157)
T ss_dssp             EEEC------CCHHHHHHHTTT--TSCCSEEEECSSSSCEEEEEEGGGHHHHHHHH
T ss_pred             EEECCCcccCccHHHHHHHHhC--CCCeEEEeeCCCCCEEEEEEcHHHHHHHHHHH
Confidence            764322     11234444333  44433333  3333344444455555555544

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=93.59  E-value=0.2  Score=44.94  Aligned_cols=122  Identities=15%  Similarity=0.181  Sum_probs=71.7

Q ss_pred             EcCchhHHHHHHHHHhccCceeeeEeeeecC-CCc--EEEEEEeCCh-hHHHHHHHHHhcCcceeEEEecCCchhhhhhh
Q 011491           86 VGDESGIINRIAGVFARRGYNIESLAVGLNV-DKA--LFTIVVSGTE-RVLRQVVEQLNKLVNVIKVEDISNEPHVEREL  161 (484)
Q Consensus        86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Te-d~~--~iTIVV~gde-~~veQI~kQL~KLidVikV~dlt~~~~V~REL  161 (484)
                      +.|+||++.||.+.+++.|+||+-++.+.+. +.+  .+++++..++ +...++.+++.+-... .+.       +.+.+
T Consensus        24 ~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d~~~a~~~L~~~~~~~~~-~v~-------~~~~~   95 (167)
T 2dt9_A           24 IPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDFAQEALEALEPVLAEIGG-EAI-------LRPDI   95 (167)
T ss_dssp             EECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGGHHHHHHHHHHHHHHHCC-EEE-------EECSE
T ss_pred             CCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHHHHHHHHHHHHHHHHhCC-cEE-------EeCCE
Confidence            4899999999999999999999999987552 234  4888887543 2233333333222222 332       35667


Q ss_pred             eeEEEeCCC-----CCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 011491          162 MLIKLNGDT-----STWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK  215 (484)
Q Consensus       162 aLiKV~~~~-----~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~  215 (484)
                      +++-|-...     .--..+++.....+-+|.-++...+.+-+.=+.+..+..++.|..
T Consensus        96 a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is~Se~~is~vv~~~d~~~Av~~Lh~  154 (167)
T 2dt9_A           96 AKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIATSEVRISVIIPAEYAEAALRAVHQ  154 (167)
T ss_dssp             EEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEEECSSEEEEEEEGGGHHHHHHHHHH
T ss_pred             EEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEEccCCEEEEEEeHHHHHHHHHHHHH
Confidence            777775543     122355665555556663333222233344345556666666654

>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A

Probab=93.16  E-value=0.2  Score=52.69  Aligned_cols=74  Identities=12%  Similarity=0.168  Sum_probs=55.5

Q ss_pred             cceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-cE--EEEEE-eCChhHHHHHHHHHhcC-cceeEEE
Q 011491           76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-AL--FTIVV-SGTERVLRQVVEQLNKL-VNVIKVE  149 (484)
Q Consensus        76 ~~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~~--iTIVV-~gde~~veQI~kQL~KL-idVikV~  149 (484)
                      +..+-.|.+.+.|+||.|.++.+.|+.+|+|+..|---|+... +-  +-|-+ +-++..+.++++.|.+. ..-+++-
T Consensus        31 g~dKTSLiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfVD~eh~~d~~v~~AL~eL~~~~~~~vkiL  109 (429)
T 1phz_A           31 QNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLDKRTKPVLGSIIKSLRNDIGATVHEL  109 (429)
T ss_dssp             SSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBCGGGHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             CCCeEEEEEEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCCccEEEEEEEeeCCCHHHHHHHHHHHhhccceEEEC
Confidence            3457788888899999999999999999999999988887543 32  22222 34455688999999888 5555543

>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3

Probab=92.48  E-value=0.54  Score=46.33  Aligned_cols=72  Identities=19%  Similarity=0.281  Sum_probs=56.7

Q ss_pred             EEEEEEEE---eCchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEe-CChHHHHHHHHHHhcccceEEE
Q 011491          314 SHTLSMLV---NNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEV  385 (484)
Q Consensus       314 ~htLsilV---eN~pGVL~RVtglFsRRGyNIeSLtVg~te~-~~iSRiTIVV~-gde~~ieql~kQL~KLidVi~V  385 (484)
                      |-.|.+.+   .|+||.|.++.+.|+.||+|+..|.--|+.. ++-..+-|=+. -++..+.+.+++|++.-.-+++
T Consensus       186 ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e~~~d~~v~~aL~~L~~~~~~~ki  262 (267)
T 2qmw_A          186 ATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQADSAITTDIKKVIAILETLDFKVEM  262 (267)
T ss_dssp             CSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEESCCSCHHHHHHHHHHHHTTEEEEE
T ss_pred             eEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEecCCcHHHHHHHHHHHHhcCeEEE
Confidence            45777888   8999999999999999999999999988765 35555555554 4567789999999887654443

>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}

Probab=91.90  E-value=0.59  Score=47.34  Aligned_cols=71  Identities=18%  Similarity=0.266  Sum_probs=54.1

Q ss_pred             EEEEEEEe--CchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEeC--ChHHHHHHHHHHhcccceEEE
Q 011491          315 HTLSMLVN--NTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPG--TDESIGKLVQLLHKLIDLHEV  385 (484)
Q Consensus       315 htLsilVe--N~pGVL~RVtglFsRRGyNIeSLtVg~te~-~~iSRiTIVV~g--de~~ieql~kQL~KLidVi~V  385 (484)
                      -++.+.+.  |+||.|.++.+.|++||+|+..|.--|+.. ++-..+-|-+.|  ++..+.+.++.|++.-.-+++
T Consensus       207 ts~i~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~~d~~v~~AL~~L~~~~~~~ki  282 (329)
T 3luy_A          207 ESVLTLIPLVTGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLDAAPWEERFRDALVEIAEHGDWAKT  282 (329)
T ss_dssp             EEEEEEECSCCSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEESSCTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             eEEEEEecCCCCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEeCCcCCHHHHHHHHHHHHhCCeEEE
Confidence            34444443  799999999999999999999999888765 445566666766  456789999999887654444

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=91.79  E-value=0.22  Score=47.11  Aligned_cols=131  Identities=12%  Similarity=0.125  Sum_probs=73.4

Q ss_pred             EEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecC-CCCeEEEEEEEeCCh-HHHHHHHHHHhcccceEEEeccCCch
Q 011491          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE-KEGLSCITTVVPGTD-ESIGKLVQLLHKLIDLHEVQDITHLP  392 (484)
Q Consensus       315 htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te-~~~iSRiTIVV~gde-~~ieql~kQL~KLidVi~V~dlt~~~  392 (484)
                      -||. -+.|+||++.||-+.|++.|+||+-++.+.++ +.+...++++++.++ +....+.+++.+-+...++..     
T Consensus        38 Iti~-g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~d~~~~~~~l~~~~~~~~~~~v~~-----  111 (200)
T 4go7_X           38 VTIV-GLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGPAAVEKLDSLRNEIGFSQLLY-----  111 (200)
T ss_dssp             EEEE-EEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGGGHHHHHHHHHTTHHHHCCSEEEE-----
T ss_pred             EEEe-cCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchhhHHHHHHHHHHHHhhhceeeEEE-----
Confidence            3443 58999999999999999999999999988766 346778888887443 334444444443333333332     


Q ss_pred             hHHHhhheeEEecCc-----cchHHHHHHHHHcCcE--EEEecCCEEEEEEeCCHHHHHHHHHHh-ccCCc
Q 011491          393 FAERELILIKIAVNT-----AARRDVLDIAKIFRAR--AVDVSDHTITLELTGDLNKIIALQRLL-EPYGI  455 (484)
Q Consensus       393 ~V~REL~LIKV~~~~-----~~r~eI~~la~ifrak--IVDvs~~si~iE~TG~~~Kidafi~lL-~pyGI  455 (484)
                        ...++.|-|--..     .--..+++....-+-+  .+.-++-.+.+=+  +.+..+..++.| +.|++
T Consensus       112 --~~~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIstSEi~IS~vV--~~~d~~~Av~aLH~~F~L  178 (200)
T 4go7_X          112 --DDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELISTSEIRISVLC--RDTELDKAVVALHEAFGL  178 (200)
T ss_dssp             --ECCEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEEECSSEEEEEE--EGGGHHHHHHHHHHHHTC
T ss_pred             --ecCeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEEccCCEEEEEE--eHHHHHHHHHHHHHHhCC
Confidence              2234444332211     1123455544443334  4544444444433  444444444444 34653

>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}

Probab=91.25  E-value=0.68  Score=41.05  Aligned_cols=111  Identities=15%  Similarity=0.180  Sum_probs=69.5

Q ss_pred             cCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhcCcceeEEEecCCchhhhhhheeEEE
Q 011491           87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKL  166 (484)
Q Consensus        87 eN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~KLidVikV~dlt~~~~V~RELaLiKV  166 (484)
                      .++||++.||-..|++.|+||+-++.++    ..++++++.++ .++++.+.|.+. +  .|.       +.+.+++|-|
T Consensus        29 ~~~~g~~~~if~~La~~~I~vd~I~~s~----~~Isf~v~~~~-~~~~il~~l~~~-~--~v~-------~~~~~a~vsv   93 (157)
T 3mah_A           29 LLSWHFMRKLFEIFEFYQEPVDMVATSE----VGVSLTIDNDK-NLPDIVRALSDI-G--DVT-------VDKDMVIICI   93 (157)
T ss_dssp             SCHHHHHHHHHHHHHHTTCCCSCEECCS----SEEEEEESCCT-THHHHHHHHTTT-E--EEE-------EEEEEEEEEE
T ss_pred             CCchhHHHHHHHHHHHcCCCEEEEEecC----CEEEEEECChH-HHHHHHHHHhcc-C--eEE-------EeCCeEEEEE
Confidence            4899999999999999999999998643    36888887544 678888888772 1  121       3456788886


Q ss_pred             eCCC-----CCHHHHHHHHHhcCcEEEEec--CCEEEEEEeCChhHHHHHHHHhc
Q 011491          167 NGDT-----STWPEIMWLVDIFRAKVVDIS--EHALTIEVTGDPGKMVAVQRNLS  214 (484)
Q Consensus       167 ~~~~-----~~r~eI~~l~~~FrAkIVDvs--~~sl~iE~TG~~~KIdafi~~L~  214 (484)
                      --..     ..-..+++...  +..|.-++  .....|.+.=+.+..+..++.|.
T Consensus        94 vG~gm~~~~gv~a~~f~aL~--~Ini~~isqg~Se~~is~vv~~~d~~~a~~~Lh  146 (157)
T 3mah_A           94 VGDMEWDNVGFEARIINALK--GVPVRMISYGGSNYNVSVLVKAEDKKKALIALS  146 (157)
T ss_dssp             EC------CCHHHHHHHTTT--TSCCSEEEECSSSSCEEEEEEGGGHHHHHHHHH
T ss_pred             ECCCcccCccHHHHHHHHhC--CCCeEEEeeCCCCCEEEEEEcHHHHHHHHHHHH
Confidence            5432     22234444444  44544443  33334444555555555555554

>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}

Probab=91.24  E-value=0.78  Score=46.47  Aligned_cols=69  Identities=14%  Similarity=0.293  Sum_probs=51.5

Q ss_pred             EEEEEEEc--CchhHHHHHHHHHhccCceeeeEeeeecCCC-c-E-EEEEEeC--ChhHHHHHHHHHhcCcceeEE
Q 011491           80 HTISVFVG--DESGIINRIAGVFARRGYNIESLAVGLNVDK-A-L-FTIVVSG--TERVLRQVVEQLNKLVNVIKV  148 (484)
Q Consensus        80 htISilVe--N~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~-~-iTIVV~g--de~~veQI~kQL~KLidVikV  148 (484)
                      .++.+.+.  |+||.|.++.+.|+.||+|+..|---|+... + + +=|-+.|  ++..+.+.++.|++.-.-+|+
T Consensus       207 ts~i~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~~d~~v~~AL~~L~~~~~~~ki  282 (329)
T 3luy_A          207 ESVLTLIPLVTGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLDAAPWEERFRDALVEIAEHGDWAKT  282 (329)
T ss_dssp             EEEEEEECSCCSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEESSCTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             eEEEEEecCCCCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEeCCcCCHHHHHHHHHHHHhCCeEEE
Confidence            34444443  7999999999999999999999998887654 2 2 4555665  467788899999887554444

>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A

Probab=91.05  E-value=0.63  Score=48.93  Aligned_cols=77  Identities=13%  Similarity=0.126  Sum_probs=56.7

Q ss_pred             CCCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEe-CChHHHHHHHHHHhcc-cceEEE
Q 011491          309 PSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVP-GTDESIGKLVQLLHKL-IDLHEV  385 (484)
Q Consensus       309 ~~~~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~-~~iSRiTIVV~-gde~~ieql~kQL~KL-idVi~V  385 (484)
                      .++-.+-+|.+.+.|+||.|.++.+.|+.||+|+..|.--|+.. ++-..+-|-+. -++..+.++++.|++. ..-++|
T Consensus        29 ~tg~dKTSLiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfVD~eh~~d~~v~~AL~eL~~~~~~~vki  108 (429)
T 1phz_A           29 SNQNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLDKRTKPVLGSIIKSLRNDIGATVHE  108 (429)
T ss_dssp             CCSSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBCGGGHHHHHHHHHHHHHTTCCCEEE
T ss_pred             CCCCCeEEEEEEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCCccEEEEEEEeeCCCHHHHHHHHHHHhhccceEEE
Confidence            34455678888889999999999999999999999999888754 33333333333 2344588999999988 544444

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=91.03  E-value=0.86  Score=46.79  Aligned_cols=128  Identities=13%  Similarity=0.194  Sum_probs=77.7

Q ss_pred             EEEEEE-EeCchhHHHHHHHHHhccCceeeeeeeeecC-CCCeEEEEEEEeCC-hHHHHHHHHHHhcccceEEEeccCCc
Q 011491          315 HTLSML-VNNTPGVLNIVTGVISRRGYNIQSLAVGPAE-KEGLSCITTVVPGT-DESIGKLVQLLHKLIDLHEVQDITHL  391 (484)
Q Consensus       315 htLsil-VeN~pGVL~RVtglFsRRGyNIeSLtVg~te-~~~iSRiTIVV~gd-e~~ieql~kQL~KLidVi~V~dlt~~  391 (484)
                      ..|++. +.|+||.+.+|...|++.|+||+-++...++ ..+...++++++.+ .+...++++++.+-+..-.|.     
T Consensus       265 ~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~~~~~a~~~l~~~~~~~~~~~v~-----  339 (421)
T 3ab4_A          265 AKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRSDGRRAMEILKKLQVQGNWTNVL-----  339 (421)
T ss_dssp             EEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETTTHHHHHHHHHHHHTTTTCSEEE-----
T ss_pred             EEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEechhHHHHHHHHHHHHHHcCCceEE-----
Confidence            345666 7899999999999999999999999763332 13567899999853 334556666665444432222     


Q ss_pred             hhHHHhhheeEEecCcc-----chHHHHHHHHHcCcEE--EEecCCEEEEEEeCCHHHHHHHHHHhc
Q 011491          392 PFAERELILIKIAVNTA-----ARRDVLDIAKIFRARA--VDVSDHTITLELTGDLNKIIALQRLLE  451 (484)
Q Consensus       392 ~~V~REL~LIKV~~~~~-----~r~eI~~la~ifrakI--VDvs~~si~iE~TG~~~Kidafi~lL~  451 (484)
                        +++.++++-|-...-     --..+++.....+-+|  +.-++..+.+=+-  .+..+..++.|.
T Consensus       340 --~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is~Se~~is~vV~--~~d~~~Av~~Lh  402 (421)
T 3ab4_A          340 --YDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELISTSEIRISVLIR--EDDLDAAARALH  402 (421)
T ss_dssp             --EECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEEEEETTEEEEEEE--GGGHHHHHHHHH
T ss_pred             --EeCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEEEcCCCeEEEEEe--HHHHHHHHHHHH
Confidence              234577777754321     1245666555545555  5556555554443  333444444443

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=90.96  E-value=1.3  Score=45.49  Aligned_cols=129  Identities=16%  Similarity=0.245  Sum_probs=79.2

Q ss_pred             EEEEEE-EcCchhHHHHHHHHHhccCceeeeEeeeecC-CCc--EEEEEEeCCh-hHHHHHHHHHhcCcceeEEEecCCc
Q 011491           80 HTISVF-VGDESGIINRIAGVFARRGYNIESLAVGLNV-DKA--LFTIVVSGTE-RVLRQVVEQLNKLVNVIKVEDISNE  154 (484)
Q Consensus        80 htISil-VeN~pGVL~RIagLFsRRGyNIeSLtVg~Te-d~~--~iTIVV~gde-~~veQI~kQL~KLidVikV~dlt~~  154 (484)
                      ..|++. +.|+||.+.||...|++.|+||+-++...++ ..+  .++++++.++ ....++.+++.+-+..-.|      
T Consensus       265 ~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~~~~~a~~~l~~~~~~~~~~~v------  338 (421)
T 3ab4_A          265 AKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRSDGRRAMEILKKLQVQGNWTNV------  338 (421)
T ss_dssp             EEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETTTHHHHHHHHHHHHTTTTCSEE------
T ss_pred             EEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEechhHHHHHHHHHHHHHHcCCceE------
Confidence            356666 7899999999999999999999999763332 023  4888888543 3344555555443332122      


Q ss_pred             hhhhhhheeEEEeCCC-----CCHHHHHHHHHhcCcEE--EEecCCEEEEEEeCChhHHHHHHHHhc-cCC
Q 011491          155 PHVERELMLIKLNGDT-----STWPEIMWLVDIFRAKV--VDISEHALTIEVTGDPGKMVAVQRNLS-KFG  217 (484)
Q Consensus       155 ~~V~RELaLiKV~~~~-----~~r~eI~~l~~~FrAkI--VDvs~~sl~iE~TG~~~KIdafi~~L~-~fG  217 (484)
                       .+++.++++-|-...     .--..+++.....+-+|  +.-++.++.+=+  +.+..+..++.|. .|.
T Consensus       339 -~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is~Se~~is~vV--~~~d~~~Av~~Lh~~f~  406 (421)
T 3ab4_A          339 -LYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELISTSEIRISVLI--REDDLDAAARALHEQFQ  406 (421)
T ss_dssp             -EEECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEEEEETTEEEEEE--EGGGHHHHHHHHHHHTT
T ss_pred             -EEeCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEEEcCCCeEEEEE--eHHHHHHHHHHHHHHHh
Confidence             245678888775532     23346766666655666  555555554443  3444555555554 355

>2nzc_A Hypothetical protein; sturctural genomics, TM1266, structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.95A {Thermotoga maritima} SCOP: d.58.18.14

Probab=89.83  E-value=1.9  Score=36.00  Aligned_cols=70  Identities=21%  Similarity=0.337  Sum_probs=62.5

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeee-ecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceE
Q 011491          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVG-PAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLH  383 (484)
Q Consensus       313 ~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg-~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi  383 (484)
                      +-+.+.|.|+|+--+-.+|=.++++.|-.|-. -+| |..+.+++=|+++++|+.+.+..+..+|.+|-.|.
T Consensus         6 ri~vigIiVe~r~~~a~kvn~iL~~yg~~I~g-RmGiP~~~~~~~iIsl~v~~~~d~I~aL~gkLg~i~GV~   76 (86)
T 2nzc_A            6 RFYILTIVVEDREKAYRQVNELLHNFSEDILL-RVGYPVREENMAIIFLVLKTDNDTIGALSGKLGQISGVR   76 (86)
T ss_dssp             EEEEEEEEEESCHHHHHHHHHHHHHTGGGEEE-EEEEEEGGGTEEEEEEEEEECHHHHHHHHHHHHTSTTEE
T ss_pred             eEEEEEEEEeCchhhHHHHHHHHHhccCEEEE-EcCCCcCcCCceEEEEEEECCHHHHHHHHHHhCCCCCEE
Confidence            45799999999999988999999999999986 555 66668999999999999999999999999998874

>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1

Probab=89.18  E-value=3.3  Score=35.73  Aligned_cols=70  Identities=20%  Similarity=0.298  Sum_probs=62.3

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhcc---CceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEEE
Q 011491          313 RSHTLSMLVNNTPGVLNIVTGVISRR---GYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEV  385 (484)
Q Consensus       313 ~~htLsilVeN~pGVL~RVtglFsRR---GyNIeSLtVg~te~~~iSRiTIVV~-gde~~ieql~kQL~KLidVi~V  385 (484)
                      ..|.+.+...+.++..+.|..+|.+.   +|.+   ++-++....+..+|+.+. .+.++++.|-+.|.+.-.|+-|
T Consensus        35 c~y~~KvIG~a~~~~~~~V~~vv~~~~p~d~~~---~~r~Ss~GkY~Svtv~v~v~S~eQv~aiY~~L~~~~~VkmV  108 (109)
T 1rwu_A           35 TPFTYKVMGQALPELVDQVVEVVQRHAPGDYTP---TVKPSSKGNYHSVSITINATHIEQVETLYEELGKIDIVRMV  108 (109)
T ss_dssp             CCEEEEEEEECCTTHHHHHHHHHHHHSSSCCCE---EEEESSCSSEEEEEEEECCSSHHHHHHHHHHHSCSSSCEEE
T ss_pred             CCceEEEEEECcHHHHHHHHHHHHHhCCCCCCc---eecCCCCCeEEEEEEEEEECCHHHHHHHHHHHhcCCCEEEe
Confidence            46999999999999999999999988   8887   558888999999999998 5788999999999998887754

>2h9z_A Hypothetical protein HP0495; feredoxin-like (beta-alpha-beta-BETA-alpha-beta), structural genomics, unknown function; NMR {Helicobacter pylori} SCOP: d.58.54.2 PDB: 2joq_A

Probab=88.16  E-value=1.5  Score=36.21  Aligned_cols=70  Identities=6%  Similarity=0.140  Sum_probs=60.1

Q ss_pred             eEEEEEEEEeCchh-HHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEEE
Q 011491          313 RSHTLSMLVNNTPG-VLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEV  385 (484)
Q Consensus       313 ~~htLsilVeN~pG-VL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gde~~ieql~kQL~KLidVi~V  385 (484)
                      ..|++.+...+.++ ....|..+| +|++.++.  .-++....+..+|+.+. .+.++++.|-+.|.+.-.|.-|
T Consensus        14 c~~~~Kvig~~~~~~~~~~V~~v~-~~~~~~~~--~r~Ss~GkY~Svtv~i~a~s~eq~~~iY~~L~~~~~Vk~v   85 (86)
T 2h9z_A           14 CLWDYRVIMTTKDTSTLKELLETY-QRPFKLEF--KNTSKNAKFYSFNVSMEVSNESERNEIFQKISQLDKVVQT   85 (86)
T ss_dssp             SEEEEEEEECCSCTHHHHHHSTTC-CSSEECCB--SCSSCCSSCEEEEEEEECCSHHHHHHHHHHHTCSSCEEEE
T ss_pred             CCceEEEEEECCcHHHHHHHHHHH-hccCCCcc--cccCCCCeEEEEEEEEEECCHHHHHHHHHHHhcCCCEEEe
Confidence            57999999999999 999999999 77886643  46777889999999988 5788999999999998888754

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=87.41  E-value=0.72  Score=43.50  Aligned_cols=128  Identities=18%  Similarity=0.168  Sum_probs=71.4

Q ss_pred             EEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-c--EEEEEEeCChhHHHHHHHHHhcCcceeEEEecCCchhhhhhh
Q 011491           85 FVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-A--LFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVEREL  161 (484)
Q Consensus        85 lVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~--~iTIVV~gde~~veQI~kQL~KLidVikV~dlt~~~~V~REL  161 (484)
                      -+.|+||++.||-+.|++.|+||+-++.+.++.. +  .++.++..+  ..++..+.|+++..=+....+    .+...+
T Consensus        42 g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~--d~~~~~~~l~~~~~~~~~~~v----~~~~~i  115 (200)
T 4go7_X           42 GLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRD--VGPAAVEKLDSLRNEIGFSQL----LYDDHI  115 (200)
T ss_dssp             EEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGG--GHHHHHHHHHTTHHHHCCSEE----EEECCE
T ss_pred             cCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchh--hHHHHHHHHHHHHhhhceeeE----EEecCe
Confidence            4889999999999999999999999988766532 2  267777643  334444444444322211111    134456


Q ss_pred             eeEEEeCCC-CC----HHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhc-cCCc
Q 011491          162 MLIKLNGDT-ST----WPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLS-KFGI  218 (484)
Q Consensus       162 aLiKV~~~~-~~----r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~-~fGI  218 (484)
                      +.|-|--.. ..    -..+++....-+-+|.-++..-+.|-+.=+.+..+..++.|- .|++
T Consensus       116 akVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIstSEi~IS~vV~~~d~~~Av~aLH~~F~L  178 (200)
T 4go7_X          116 GKVSLIGAGMRSHPGVTATFCEALAAVGVNIELISTSEIRISVLCRDTELDKAVVALHEAFGL  178 (200)
T ss_dssp             EEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEEECSSEEEEEEEGGGHHHHHHHHHHHHTC
T ss_pred             eeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEEccCCEEEEEEeHHHHHHHHHHHHHHhCC
Confidence            655553322 12    224555554444555444333333444445566665666555 4763

>2nzc_A Hypothetical protein; sturctural genomics, TM1266, structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.95A {Thermotoga maritima} SCOP: d.58.18.14

Probab=86.84  E-value=3.5  Score=34.46  Aligned_cols=69  Identities=13%  Similarity=0.194  Sum_probs=57.1

Q ss_pred             ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeee-ecCCC--cEEEEEEeCChhHHHHHHHHHhcCccee
Q 011491           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVG-LNVDK--ALFTIVVSGTERVLRQVVEQLNKLVNVI  146 (484)
Q Consensus        77 ~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg-~Ted~--~~iTIVV~gde~~veQI~kQL~KLidVi  146 (484)
                      .+-+.+.|.|+|+--+-.+|=.++++-|-.|-.= +| |..+.  ++|+++++|+.+.+..+..+|.+|--|-
T Consensus         5 ~ri~vigIiVe~r~~~a~kvn~iL~~yg~~I~gR-mGiP~~~~~~~iIsl~v~~~~d~I~aL~gkLg~i~GV~   76 (86)
T 2nzc_A            5 KRFYILTIVVEDREKAYRQVNELLHNFSEDILLR-VGYPVREENMAIIFLVLKTDNDTIGALSGKLGQISGVR   76 (86)
T ss_dssp             CEEEEEEEEEESCHHHHHHHHHHHHHTGGGEEEE-EEEEEGGGTEEEEEEEEEECHHHHHHHHHHHHTSTTEE
T ss_pred             eeEEEEEEEEeCchhhHHHHHHHHHhccCEEEEE-cCCCcCcCCceEEEEEEECCHHHHHHHHHHhCCCCCEE
Confidence            3558999999999988889999999999999743 33 43333  4599999999999999999999987663

>2lqj_A Mg2+ transport protein; ACT domain, membrane protein, regulation, HYDR; NMR {Mycobacterium tuberculosis}

Probab=85.54  E-value=8.3  Score=32.18  Aligned_cols=72  Identities=14%  Similarity=0.175  Sum_probs=58.3

Q ss_pred             EEEEEEEE--eCchhHHHHHHHHHhccCceeeeeeeeecCCCC-e-EEEEEEEe-CChHHHHHHHHHHhcccceEEEe
Q 011491          314 SHTLSMLV--NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEG-L-SCITTVVP-GTDESIGKLVQLLHKLIDLHEVQ  386 (484)
Q Consensus       314 ~htLsilV--eN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~-i-SRiTIVV~-gde~~ieql~kQL~KLidVi~V~  386 (484)
                      .|++.+..  ++..-|...+...+.+-+|.+.+|...+.+ ++ + -+-+++.. -+++.+++|+.+|...-.|..|.
T Consensus         8 ~Y~v~Vic~~~~e~~vR~lL~~~L~~~~~~l~~l~s~~~~-~~~veI~A~L~at~~~~~~Le~iv~rLs~ep~V~~a~   84 (94)
T 2lqj_A            8 PYQVRVICRPKAETYVRAHIVQRTSSNDITLRGIRTGPAG-DDNITLTAHLLMVGHTPAKLERLVAELSLQPGVYAVH   84 (94)
T ss_dssp             EEEEEEEECHHHHHHHHHHHHHHHHHHTEEEEEEEEEECS-SSCEEEEEEEEEESCCHHHHHHHHHHHHHSTTEEEEE
T ss_pred             EEEEEEEECcHHHHHHHHHHHHHHhcCCCceeEeeeecCC-CCeEEEEEEEEecCCCHHHHHHHHHHHhCCCCeEEEE
Confidence            48888887  677888999999999999999999977766 55 4 34444444 46778999999999999999886

>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13

Probab=83.58  E-value=1.6  Score=36.69  Aligned_cols=57  Identities=14%  Similarity=0.099  Sum_probs=44.9

Q ss_pred             eeEEEeCCC--CCHHHHHHHHHhcCcEE------EEe----cCCEEEEEEeCChhHHHHHHHHhccCCc
Q 011491          162 MLIKLNGDT--STWPEIMWLVDIFRAKV------VDI----SEHALTIEVTGDPGKMVAVQRNLSKFGI  218 (484)
Q Consensus       162 aLiKV~~~~--~~r~eI~~l~~~FrAkI------VDv----s~~sl~iE~TG~~~KIdafi~~L~~fGI  218 (484)
                      .++|+....  ...+-|-++++.|+..+      ||-    .-.++++|++|+++++++.++.|+..|+
T Consensus        22 ~lvrL~f~g~~~~~PiIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v   90 (106)
T 3dhx_A           22 PMLRLEFTGQSVDAPLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEHHV   90 (106)
T ss_dssp             EEEEEEEEEECTTCCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             eEEEEEEcCCccChhHHHHHHHHHCCCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHHHCCC
Confidence            477776543  45668899999998654      233    4567999999999999999999999995

>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13

Probab=83.39  E-value=3.2  Score=34.30  Aligned_cols=60  Identities=13%  Similarity=0.101  Sum_probs=46.9

Q ss_pred             eEEEeCCC--CCHHHHHHHHHhcCcEE-------EEe---cCCEEEEEEeCChhHHHHHHHHhccCCc-EEEe
Q 011491          163 LIKLNGDT--STWPEIMWLVDIFRAKV-------VDI---SEHALTIEVTGDPGKMVAVQRNLSKFGI-KELA  222 (484)
Q Consensus       163 LiKV~~~~--~~r~eI~~l~~~FrAkI-------VDv---s~~sl~iE~TG~~~KIdafi~~L~~fGI-lE~a  222 (484)
                      ++|+....  ...+-|-++++.|+..+       =.+   .-.++++|+.|++++++++++.|+..|+ .|..
T Consensus        25 lv~l~f~g~~~~~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vEvl   97 (101)
T 2qrr_A           25 LVRMEFTGATVDAPLMSQISRKYNIDVSILSSDLDYAGGVKFGMMVAELFGNEQDDSAAIEYLRENNVKVEVL   97 (101)
T ss_dssp             EEEEEECTTSCSSCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             EEEEEEcCCCcCchHHHHHHHHhCCCEEEEEeeeeEcCCeeEEEEEEEEeCCHHHHHHHHHHHHHcCCEEEEe
Confidence            78887664  45567999999986543       332   3378999999999999999999999996 5665

>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13

Probab=83.19  E-value=2.2  Score=35.51  Aligned_cols=61  Identities=11%  Similarity=0.147  Sum_probs=46.8

Q ss_pred             eeEEecCccc--hHHHHHHHHHcC-------cEEEEec---CCEEEEEEeC-CHHHHHHHHHHhccCCc-EEEee
Q 011491          400 LIKIAVNTAA--RRDVLDIAKIFR-------ARAVDVS---DHTITLELTG-DLNKIIALQRLLEPYGI-CEVAR  460 (484)
Q Consensus       400 LIKV~~~~~~--r~eI~~la~ifr-------akIVDvs---~~si~iE~TG-~~~Kidafi~lL~pyGI-lEvaR  460 (484)
                      ++|+......  .+-|-++++.|+       |+|-.+.   -.++++|+.| +.++++++++.|+..|+ +|+..
T Consensus        22 lvrL~f~g~~~~~PvIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~~ai~~L~~~~v~vEvlg   96 (98)
T 3ced_A           22 IVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQVKMEVLR   96 (98)
T ss_dssp             EEEEEEEEESCHHHHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             EEEEEECCCccCchHHHHHHHHHCCcEEEEEEEeEEeCCEeEEEEEEEEeCCCHHHHHHHHHHHHHCCCEEEEec
Confidence            7888765433  456888888774       4555543   3679999999 89999999999999996 67764

>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13

Probab=82.82  E-value=2.7  Score=34.76  Aligned_cols=60  Identities=17%  Similarity=0.143  Sum_probs=46.5

Q ss_pred             eeEEecCcc--chHHHHHHHHHcCc-------EEEEe---cCCEEEEEEeCCHHHHHHHHHHhccCCc-EEEe
Q 011491          400 LIKIAVNTA--ARRDVLDIAKIFRA-------RAVDV---SDHTITLELTGDLNKIIALQRLLEPYGI-CEVA  459 (484)
Q Consensus       400 LIKV~~~~~--~r~eI~~la~ifra-------kIVDv---s~~si~iE~TG~~~Kidafi~lL~pyGI-lEva  459 (484)
                      ++|+.....  ..+-|-++++.|+.       +|-.+   .-.++++|+.|+.++++++++.|+..|+ .|..
T Consensus        25 lv~l~f~g~~~~~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vEvl   97 (101)
T 2qrr_A           25 LVRMEFTGATVDAPLMSQISRKYNIDVSILSSDLDYAGGVKFGMMVAELFGNEQDDSAAIEYLRENNVKVEVL   97 (101)
T ss_dssp             EEEEEECTTSCSSCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             EEEEEEcCCCcCchHHHHHHHHhCCCEEEEEeeeeEcCCeeEEEEEEEEeCCHHHHHHHHHHHHHcCCEEEEe
Confidence            788876543  34568889888754       44453   3378999999999999999999999996 6766

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=82.30  E-value=5.1  Score=41.88  Aligned_cols=117  Identities=14%  Similarity=0.242  Sum_probs=76.9

Q ss_pred             cCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChh--HHHHHHHHHhcCcceeEEEecCCchhhhhhheeE
Q 011491           87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTER--VLRQVVEQLNKLVNVIKVEDISNEPHVERELMLI  164 (484)
Q Consensus        87 eN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~--~veQI~kQL~KLidVikV~dlt~~~~V~RELaLi  164 (484)
                      .++||++.||...|++.|+||+.++.++    .-++++++.++.  ..+++.+.|.+.+..-+|.       +.+.+++|
T Consensus       309 ~~~~g~~~~if~~l~~~~i~vd~i~~~~----~~is~~V~~~d~~~~~~~~~~el~~~~~~~~v~-------v~~~vA~V  377 (446)
T 3tvi_A          309 NSEVGFCRKILSILEMYGVSFEHMPSGV----DSVSLVIEDCKLDGKCDKIIEEIKKQCNPDSIE-------IHPNMALV  377 (446)
T ss_dssp             GGSTTHHHHHHHHHHTTTCCEEEBCEET----TEEEEEEEHHHHTTTHHHHHHHHHHHSCCSEEE-------EEEEEEEE
T ss_pred             CccHHHHHHHHHHHHHcCCcEEEEecCC----CEEEEEEecchHHHHHHHHHHHHHHhcCCCcEE-------EeCCeEEE
Confidence            5799999999999999999999887542    358888875542  4677888887765433333       45678888


Q ss_pred             EEeCC-----CCCHHHHHHHHHhcCcEEEEec--CCEEEEEEeCChhHHHHHHHHhc
Q 011491          165 KLNGD-----TSTWPEIMWLVDIFRAKVVDIS--EHALTIEVTGDPGKMVAVQRNLS  214 (484)
Q Consensus       165 KV~~~-----~~~r~eI~~l~~~FrAkIVDvs--~~sl~iE~TG~~~KIdafi~~L~  214 (484)
                      -|--.     +.--..+++.....+-+|.-++  ...+.|-+.=+.+..+..++.|.
T Consensus       378 SvVG~gM~~~~Gvaarif~aLa~~~InI~mIsqgtSei~Is~vV~~~d~~~Av~aLH  434 (446)
T 3tvi_A          378 ATVGTGMAKTKGIANKIFTALSKENVNIRMIDQGSSEINVIVGVETVDFEKAVKSIY  434 (446)
T ss_dssp             EEECGGGSSCTTHHHHHHHHHHHTTCCEEEEEECSCTTEEEEEEEGGGHHHHHHHHH
T ss_pred             EEECCCccCChhHHHHHHHHHHHCCCCEEEEEecCCCceEEEEEcHHHHHHHHHHHH
Confidence            77432     3344567777777677775554  33344444444555555555553

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=82.16  E-value=9.8  Score=41.09  Aligned_cols=127  Identities=13%  Similarity=0.084  Sum_probs=79.7

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh-HHHHHHHHHHhccc-------ceEEEec
Q 011491          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD-ESIGKLVQLLHKLI-------DLHEVQD  387 (484)
Q Consensus       316 tLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde-~~ieql~kQL~KLi-------dVi~V~d  387 (484)
                      +|. .+.+.||++.||.+.|++.|+||+-++.+.++ .+...++++++.++ +...++.+++.+-+       ...+|. 
T Consensus       274 ~i~-~~~~~~g~~~~if~~La~~~I~Vd~I~qs~~~-~~~~~Isftv~~~~~~~a~~~l~~~~~el~~~~~~~~~~~v~-  350 (600)
T 3l76_A          274 ALL-RVPDRPGVASKLFRDIAQQQVDIDLIIQSIHD-GNSNDIAFTVVKDLLNTAEAVTSAIAPALRSYPEADQEAEII-  350 (600)
T ss_dssp             EEE-EEECSTTHHHHHHHHHHHTTCCCCCEEBCCCB-TTEEEEEEEECGGGHHHHHHHHHHHGGGGSSSTTCSSSSEEE-
T ss_pred             EEe-CCCCcccHHHHHHHHHHHcCCCEEEEEeeccC-CCCceEEEEEeHHHHHHHHHHHHHHHHHhhccccccCcceeE-
Confidence            444 56789999999999999999999999887765 46778999998543 23444444444322       222222 


Q ss_pred             cCCchhHHHhhheeEEecCc-----cchHHHHHHHHHcCcEEEEecCCEEEEEEeCCHHHHHHHHHHhc
Q 011491          388 ITHLPFAERELILIKIAVNT-----AARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLE  451 (484)
Q Consensus       388 lt~~~~V~REL~LIKV~~~~-----~~r~eI~~la~ifrakIVDvs~~si~iE~TG~~~Kidafi~lL~  451 (484)
                            +.+.+++|-|--..     ..-..+++.....+.+|.-++..-+.|.+.=+.+..+..++.|.
T Consensus       351 ------~~~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~istSe~~Is~vI~~~d~~~Av~aLh  413 (600)
T 3l76_A          351 ------VEKGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMISTSEVKVSCVIDQRDADRAIAALS  413 (600)
T ss_dssp             ------EECSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEEECSSEEEEEEEGGGHHHHHHHHH
T ss_pred             ------ecCCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEecCCCEEEEEEcHHHHHHHHHHHH
Confidence                  23457777765332     22356777777777776655444444444444555555555554

>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13

Probab=81.38  E-value=3  Score=34.40  Aligned_cols=60  Identities=20%  Similarity=0.350  Sum_probs=46.0

Q ss_pred             eEEEeCCC--CCHHHHHHHHHhcCcEE-------EEe---cCCEEEEEEeCChhHHHHHHHHhccCCc-EEEe
Q 011491          163 LIKLNGDT--STWPEIMWLVDIFRAKV-------VDI---SEHALTIEVTGDPGKMVAVQRNLSKFGI-KELA  222 (484)
Q Consensus       163 LiKV~~~~--~~r~eI~~l~~~FrAkI-------VDv---s~~sl~iE~TG~~~KIdafi~~L~~fGI-lE~a  222 (484)
                      ++|+....  ...+-|-++++.|+..+       =.+   .-..|++|+.|+++.++++++.|+..|+ .|..
T Consensus        25 lv~l~f~g~~~~~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vEvl   97 (100)
T 2qsw_A           25 IVRLLFHGEQAKLPIISHIVQEYQVEVSIIQGNIQQTKQGAVGSLYIQLLGEEQNILAAIEGLRKLRVETEVI   97 (100)
T ss_dssp             EEEEEEESCSCSSCHHHHHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEES
T ss_pred             EEEEEEcCCCcCchHHHHHHHHhCCCEEEEEeeceEcCCeeEEEEEEEEECCHHHHHHHHHHHHHcCCEEEEc
Confidence            77777654  45567889999886543       332   3378999999999999999999999996 5654

>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13

Probab=80.90  E-value=3.6  Score=34.52  Aligned_cols=61  Identities=13%  Similarity=0.116  Sum_probs=45.5

Q ss_pred             heeEEecCcc--chHHHHHHHHHcCc-------EEEEe---cCCEEEEEEeCCHHHHHHHHHHhccCCc-EEEe
Q 011491          399 ILIKIAVNTA--ARRDVLDIAKIFRA-------RAVDV---SDHTITLELTGDLNKIIALQRLLEPYGI-CEVA  459 (484)
Q Consensus       399 ~LIKV~~~~~--~r~eI~~la~ifra-------kIVDv---s~~si~iE~TG~~~Kidafi~lL~pyGI-lEva  459 (484)
                      .++|+....+  ..+-|-++++.|+.       +|=.+   .-.++++|++|+.+++++.++.|+..|+ .|+.
T Consensus        22 ~lvrL~f~g~~~~~PiIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vEvl   95 (106)
T 3dhx_A           22 PMLRLEFTGQSVDAPLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEHHVKVEVL   95 (106)
T ss_dssp             EEEEEEEEEECTTCCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             eEEEEEEcCCccChhHHHHHHHHHCCCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHHHCCCEEEEe
Confidence            4777766443  34678889888874       33332   4567999999999999999999999996 4543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	484
d2pc6a2	77	d.58.18.6 (A:1-77) Acetolactate synthase small sub	7e-29
d2pc6a2	77	d.58.18.6 (A:1-77) Acetolactate synthase small sub	4e-26
d2fgca2	78	d.58.18.6 (A:27-104) Acetolactate synthase small s	9e-29
d2fgca2	78	d.58.18.6 (A:27-104) Acetolactate synthase small s	3e-28
d2f1fa1	76	d.58.18.6 (A:2-77) Acetolactate synthase small sub	4e-28
d2f1fa1	76	d.58.18.6 (A:2-77) Acetolactate synthase small sub	2e-25
d2pc6a1	86	d.58.18.6 (A:78-163) Acetolactate synthase small s	4e-27
d2pc6a1	86	d.58.18.6 (A:78-163) Acetolactate synthase small s	3e-25
d2f1fa2	86	d.58.18.6 (A:78-163) Acetolactate synthase small s	2e-26
d2f1fa2	86	d.58.18.6 (A:78-163) Acetolactate synthase small s	1e-24
d2fgca1	83	d.58.18.6 (A:105-187) Acetolactate synthase small	8e-23
d2fgca1	83	d.58.18.6 (A:105-187) Acetolactate synthase small	2e-22
d1sc6a3	84	d.58.18.1 (A:327-410) Phosphoglycerate dehydrogena	1e-15
d1sc6a3	84	d.58.18.1 (A:327-410) Phosphoglycerate dehydrogena	6e-09
d2f06a2	70	d.58.18.11 (A:1-70) Hypothetical protein BT0572 {B	4e-15
d2f06a2	70	d.58.18.11 (A:1-70) Hypothetical protein BT0572 {B	2e-12
d1ygya3	78	d.58.18.1 (A:452-529) Phosphoglycerate dehydrogena	2e-13
d1ygya3	78	d.58.18.1 (A:452-529) Phosphoglycerate dehydrogena	4e-12
d1y7pa2	77	d.58.18.12 (A:2-78) Hypothetical protein AF1403, N	4e-06
d2f06a1	71	d.58.18.11 (A:71-141) Hypothetical protein BT0572	1e-05
d1u8sa1	86	d.58.18.5 (A:2-87) putative transcriptional repres	3e-05

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]} Length = 77

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

 Score =  106 bits (267), Expect = 7e-29
 Identities = 34/76 (44%), Positives = 55/76 (72%), Gaps = 2/76 (2%)

Query: 79  RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVV 136
           RH IS+ + +E+G ++R+AG+F+ RGYNIESL+V    D  L   T+V +G + ++ Q+ 
Sbjct: 2   RHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQIT 61

Query: 137 EQLNKLVNVIKVEDIS 152
           +QLNKL+ V+K+ D+S
Sbjct: 62  KQLNKLIEVVKLIDLS 77

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]} Length = 77

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

 Score = 98.9 bits (247), Expect = 4e-26
 Identities = 31/75 (41%), Positives = 50/75 (66%)

Query: 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQ 374
           H +S+L+ N  G L+ V G+ S RGYNI+SL+V P E   LS +T V  G DE + ++ +
Sbjct: 3   HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQITK 62

Query: 375 LLHKLIDLHEVQDIT 389
            L+KLI++ ++ D++
Sbjct: 63  QLNKLIEVVKLIDLS 77

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]} Length = 78

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

 Score =  106 bits (266), Expect = 9e-29
 Identities = 28/77 (36%), Positives = 49/77 (63%), Gaps = 2/77 (2%)

Query: 77  VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQ 134
           ++ H +S+ V ++ G++ ++A +FARRG+NI S+ VG +    L    I+V G ++ + Q
Sbjct: 1   IREHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQ 60

Query: 135 VVEQLNKLVNVIKVEDI 151
           + +Q  KLV V+KV  I
Sbjct: 61  IEKQAYKLVEVVKVTPI 77

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]} Length = 78

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

 Score =  104 bits (262), Expect = 3e-28
 Identities = 31/77 (40%), Positives = 52/77 (67%)

Query: 312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGK 371
           +R H +SMLV+N PGV+  V  + +RRG+NI S+ VG +E  GLS +  +V G D++I +
Sbjct: 1   IREHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQ 60

Query: 372 LVQLLHKLIDLHEVQDI 388
           + +  +KL+++ +V  I
Sbjct: 61  IEKQAYKLVEVVKVTPI 77

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]} Length = 76

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

 Score =  104 bits (262), Expect = 4e-28
 Identities = 34/75 (45%), Positives = 52/75 (69%), Gaps = 2/75 (2%)

Query: 79  RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVV 136
           R  +SV + +ESG ++R+ G+F++RGYNIESL V    D  L   TI   G E+VL Q+ 
Sbjct: 1   RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIE 60

Query: 137 EQLNKLVNVIKVEDI 151
           +QL+KLV+V++V ++
Sbjct: 61  KQLHKLVDVLRVSEL 75

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]} Length = 76

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

 Score = 97.0 bits (242), Expect = 2e-25
 Identities = 28/74 (37%), Positives = 46/74 (62%)

Query: 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQ 374
             LS+L+ N  G L+ V G+ S+RGYNI+SL V P +   LS +T    G ++ + ++ +
Sbjct: 2   RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEK 61

Query: 375 LLHKLIDLHEVQDI 388
            LHKL+D+  V ++
Sbjct: 62  QLHKLVDVLRVSEL 75

>d2pc6a1 d.58.18.6 (A:78-163) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

 Score =  102 bits (255), Expect = 4e-27
 Identities = 30/79 (37%), Positives = 44/79 (55%)

Query: 153 NEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRN 212
           +E +VERELML+K+        E+  L DIFR  ++D++    TIE+TG   K+    + 
Sbjct: 1   SEGYVERELMLVKVRAVGKDREEMKRLADIFRGNIIDVTNELYTIELTGTRSKLDGFLQA 60

Query: 213 LSKFGIKELARTGKIALRR 231
           +    I E+ARTG   L R
Sbjct: 61  VDCNLILEIARTGVSGLSR 79

>d2pc6a1 d.58.18.6 (A:78-163) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

 Score = 96.7 bits (241), Expect = 3e-25
 Identities = 27/79 (34%), Positives = 44/79 (55%)

Query: 392 PFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLE 451
            + EREL+L+K+      R ++  +A IFR   +DV++   T+ELTG  +K+    + ++
Sbjct: 3   GYVERELMLVKVRAVGKDREEMKRLADIFRGNIIDVTNELYTIELTGTRSKLDGFLQAVD 62

Query: 452 PYGICEVARTGRVALVRES 470
              I E+ARTG   L R  
Sbjct: 63  CNLILEIARTGVSGLSRGE 81

>d2f1fa2 d.58.18.6 (A:78-163) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

 Score =  100 bits (251), Expect = 2e-26
 Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 1/78 (1%)

Query: 155 PHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLS 214
            HVERE+ML+K+        E+    +IFR +++D++    T+++ G  GK+ A   ++ 
Sbjct: 3   AHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLYTVQLAGTSGKLDAFLASIR 62

Query: 215 KFG-IKELARTGKIALRR 231
               I E+AR+G + L R
Sbjct: 63  DVAKIVEVARSGVVGLSR 80

>d2f1fa2 d.58.18.6 (A:78-163) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

 Score = 95.5 bits (238), Expect = 1e-24
 Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 1/80 (1%)

Query: 392 PFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLE 451
              ERE++L+KI  +   R +V    +IFR + +DV+    T++L G   K+ A    + 
Sbjct: 3   AHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLYTVQLAGTSGKLDAFLASIR 62

Query: 452 PYG-ICEVARTGRVALVRES 470
               I EVAR+G V L R  
Sbjct: 63  DVAKIVEVARSGVVGLSRGD 82

>d2fgca1 d.58.18.6 (A:105-187) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]} Length = 83

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

 Score = 89.7 bits (223), Expect = 8e-23
 Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 1/79 (1%)

Query: 153 NEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRN 212
            E  VERE+ LIK+  D     EI  LV+IFR K++D+S     IE+TG   K+ A    
Sbjct: 3   PENRVEREMALIKVRFDEDK-QEIFQLVEIFRGKIIDVSREGAIIEITGARSKVEAFINL 61

Query: 213 LSKFGIKELARTGKIALRR 231
           L +  ++E+ARTG +A+ R
Sbjct: 62  LPQKQVEEIARTGIVAMNR 80

>d2fgca1 d.58.18.6 (A:105-187) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]} Length = 83

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

 Score = 88.6 bits (220), Expect = 2e-22
 Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 395 ERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLEPYG 454
           ERE+ LIK+  +   ++++  + +IFR + +DVS     +E+TG  +K+ A   LL    
Sbjct: 8   EREMALIKVRFD-EDKQEIFQLVEIFRGKIIDVSREGAIIEITGARSKVEAFINLLPQKQ 66

Query: 455 ICEVARTGRVALVRES 470
           + E+ARTG VA+ R +
Sbjct: 67  VEEIARTGIVAMNRWN 82

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]} Length = 84

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

 Score = 69.7 bits (171), Expect = 1e-15
 Identities = 11/79 (13%), Positives = 30/79 (37%)

Query: 70  PPITASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE 129
           P ++        +     +  G++  +  +FA +G NI +  +  +       I +   E
Sbjct: 2   PEVSLPLHGGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADE 61

Query: 130 RVLRQVVEQLNKLVNVIKV 148
            V  + ++ +  +   I+ 
Sbjct: 62  DVAEKALQAMKAIPGTIRA 80

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]} Length = 84

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

 Score = 50.9 bits (122), Expect = 6e-09
 Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQ 374
             L  +  N PGVL  +  + + +G NI +  +  + + G   I   +   ++   K +Q
Sbjct: 12  RRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVI--DIEADEDVAEKALQ 69

Query: 375 LLHKLID 381
            +  +  
Sbjct: 70  AMKAIPG 76

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 70

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

 Score = 67.8 bits (166), Expect = 4e-15
 Identities = 12/61 (19%), Positives = 30/61 (49%)

Query: 78  KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVE 137
               +S+F+ ++SG +  +  V A+   N+ +L +  N D  +   +VS  ++  + + +
Sbjct: 2   VAKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVSDPDKAYKALKD 61

Query: 138 Q 138
            
Sbjct: 62  N 62

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 70

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

 Score = 60.1 bits (146), Expect = 2e-12
 Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQ 374
             LS+ + N  G L  VT V+++   N+ +L +      G+     +V   D++   L  
Sbjct: 4   KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRG--IVSDPDKAYKALKD 61

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 78

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 62.9 bits (153), Expect = 2e-13
 Identities = 13/75 (17%), Positives = 31/75 (41%)

Query: 78  KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVE 137
           +   + +   D  G + +I  +    G NI++  +  + +    TI++   + V   V  
Sbjct: 2   QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQDVPDDVRT 61

Query: 138 QLNKLVNVIKVEDIS 152
            +   V+  K+E + 
Sbjct: 62  AIAAAVDAYKLEVVD 76

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 78

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 59.5 bits (144), Expect = 4e-12
 Identities = 10/75 (13%), Positives = 29/75 (38%), Gaps = 2/75 (2%)

Query: 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQ 374
             L +   + PG L  +  ++   G NIQ+  +    +   + I   +    +    +  
Sbjct: 4   INLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL--DQDVPDDVRT 61

Query: 375 LLHKLIDLHEVQDIT 389
            +   +D ++++ + 
Sbjct: 62  AIAAAVDAYKLEVVD 76

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 77

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 42.4 bits (100), Expect = 4e-06
 Identities = 10/71 (14%), Positives = 27/71 (38%), Gaps = 3/71 (4%)

Query: 82  ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD---KALFTIVVSGTERVLRQVVEQ 138
           + +   ++ G++  +  + A  G NI      L      +    I          +++E+
Sbjct: 4   LRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGGDFEKILER 63

Query: 139 LNKLVNVIKVE 149
           +     +I++E
Sbjct: 64  VKTFDYIIEIE 74

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 71

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

 Score = 41.2 bits (97), Expect = 1e-05
 Identities = 12/70 (17%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 82  ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK 141
           + +   +  G + ++ G  +  G  IE +    N + A   I  S  ++   +V+++   
Sbjct: 2   VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSNMDKC-IEVLKEKK- 59

Query: 142 LVNVIKVEDI 151
            V+++   D+
Sbjct: 60  -VDLLAASDL 68

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

 Score = 40.2 bits (94), Expect = 3e-05
 Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 4/83 (4%)

Query: 78  KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVE 137
           +   I+    D  GI N +  +  + G NI    + +   +    +++SG+   + +V  
Sbjct: 4   QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSPSNITRVET 63

Query: 138 QLNKLVN----VIKVEDISNEPH 156
            L  L      +  ++  S   H
Sbjct: 64  TLPLLGQQHDLITMMKRTSPHDH 86

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	484
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	99.97
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	99.97
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	99.97
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	99.96
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	99.96
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	99.95
d2pc6a1	86	Acetolactate synthase small subunit, IlvH {Nitroso	99.92
d2fgca1	83	Acetolactate synthase small subunit, IlvH {Thermot	99.91
d2f1fa2	86	Acetolactate synthase small subunit, IlvH {Escheri	99.91
d2pc6a1	86	Acetolactate synthase small subunit, IlvH {Nitroso	99.91
d2fgca1	83	Acetolactate synthase small subunit, IlvH {Thermot	99.91
d2f1fa2	86	Acetolactate synthase small subunit, IlvH {Escheri	99.9
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	99.57
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	99.55
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	99.12
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	99.08
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	99.02
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	99.01
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	98.55
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	98.5
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.22
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	98.17
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	98.15
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.02
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	98.01
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	97.84
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	97.54
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	97.51
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	96.89
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	96.75
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	96.61
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	96.24
d2hmfa2	67	Aspartokinase {Methanococcus jannaschii [TaxId: 21	95.11
d2hmfa2	67	Aspartokinase {Methanococcus jannaschii [TaxId: 21	94.2
d2hmfa3	100	Aspartokinase {Methanococcus jannaschii [TaxId: 21	93.94
d2cdqa3	75	Aspartokinase {Thale cress (Arabidopsis thaliana)	93.71
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	93.52
d2hmfa3	100	Aspartokinase {Methanococcus jannaschii [TaxId: 21	92.51
d1rwua_	87	Hypothetical protein ybeD {Escherichia coli [TaxId	91.66
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	91.4
d2cdqa3	75	Aspartokinase {Thale cress (Arabidopsis thaliana)	91.12
d3ceda1	95	Methionine import ATP-binding protein MetN2 {Staph	89.62
d2j0wa2	91	Aspartokinase {Escherichia coli [TaxId: 562]}	88.62
d2nzca1	80	Hypothetical protein TM1266 {Thermotoga maritima [	88.44
d2qswa1	90	Methionine import ATP-binding protein MetN2 {Enter	87.81
d2qrra1	97	Methionine import ATP-binding protein MetN {Vibrio	85.6
d2j0wa2	91	Aspartokinase {Escherichia coli [TaxId: 562]}	85.05
d2joqa1	86	Hypothetical protein HP0495 {Helicobacter pylori [	84.94
d2qswa1	90	Methionine import ATP-binding protein MetN2 {Enter	84.55
d2qrra1	97	Methionine import ATP-binding protein MetN {Vibrio	84.26
d3ceda1	95	Methionine import ATP-binding protein MetN2 {Staph	84.0
d2nzca1	80	Hypothetical protein TM1266 {Thermotoga maritima [	83.14
d1gtda_	82	PurS subunit of FGAM synthetase {Archaeon Methanob	82.84
d1gtda_	82	PurS subunit of FGAM synthetase {Archaeon Methanob	82.45
d2j0wa3	64	Aspartokinase {Escherichia coli [TaxId: 562]}	82.39

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.97  E-value=3.5e-32  Score=222.01  Aligned_cols=77  Identities=40%  Similarity=0.673  Sum_probs=75.8

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEeccC
Q 011491          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDIT  389 (484)
Q Consensus       313 ~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dlt  389 (484)
                      |+|||+++|+|+||||+||+|+|+||||||+||+||+||++++||||||+.|+++.++|++|||+||+||++|.|+|
T Consensus         1 Mk~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~~~~~~i~qi~kQL~KlvdVi~V~dlt   77 (77)
T d2pc6a2           1 MRHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQITKQLNKLIEVVKLIDLS   77 (77)
T ss_dssp             EEEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECHHHHHHHHHHHHHSTTEEEEEEGG
T ss_pred             CcEEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEECCHHHHHHHHHHHhCCcCEEEEEECc
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999986

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=99.97  E-value=6.1e-32  Score=221.07  Aligned_cols=78  Identities=40%  Similarity=0.695  Sum_probs=76.4

Q ss_pred             ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEeccC
Q 011491          312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDIT  389 (484)
Q Consensus       312 ~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dlt  389 (484)
                      |++|||+++|+|+||||+||+|+|+||||||+||+||+||++++||||||++|+++.++|++|||+||+||++|+|++
T Consensus         1 mk~~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~g~~~~i~qi~kQl~KlidV~~V~dld   78 (78)
T d2fgca2           1 IREHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQIEKQAYKLVEVVKVTPID   78 (78)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECTTHHHHHHHHHTTSTTEEEEEECC
T ss_pred             CceEEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEEEcCHHHHHHHHHHHhCCcCEEEEEeCC
Confidence            689999999999999999999999999999999999999999999999999999999999999999999999999985

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=5.6e-31  Score=214.36  Aligned_cols=75  Identities=37%  Similarity=0.649  Sum_probs=74.1

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEecc
Q 011491          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI  388 (484)
Q Consensus       314 ~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dl  388 (484)
                      ||||+++|+|+||||+||+|+|+||||||+||+||+||++++||||||+.|+++.++|++|||+||+||++|.|+
T Consensus         1 khtlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~~~~~~i~qi~kQL~KlidV~~V~dl   75 (76)
T d2f1fa1           1 RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHKLVDVLRVSEL   75 (76)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESCHHHHHHHHHHHHHSTTEEEEEEG
T ss_pred             CEEEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEEECCHHHHHHHHHHHhCCCCEEEEEeC
Confidence            799999999999999999999999999999999999999999999999999999999999999999999999987

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.96  E-value=9.1e-30  Score=207.65  Aligned_cols=75  Identities=45%  Similarity=0.810  Sum_probs=73.1

Q ss_pred             eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChhHHHHHHHHHhcCcceeEEEecC
Q 011491           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS  152 (484)
Q Consensus        78 ~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gde~~veQI~kQL~KLidVikV~dlt  152 (484)
                      |||+|+++|+|+||||+||+|+|+||||||+||+||+||++++  |||++.|+++.++|++|||+||+||++|.|+|
T Consensus         1 Mk~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~~~~~~i~qi~kQL~KlvdVi~V~dlt   77 (77)
T d2pc6a2           1 MRHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQITKQLNKLIEVVKLIDLS   77 (77)
T ss_dssp             EEEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECHHHHHHHHHHHHHSTTEEEEEEGG
T ss_pred             CcEEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEECCHHHHHHHHHHHhCCcCEEEEEECc
Confidence            7899999999999999999999999999999999999999985  99999999999999999999999999999986

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=99.96  E-value=1.5e-29  Score=206.81  Aligned_cols=76  Identities=37%  Similarity=0.713  Sum_probs=73.8

Q ss_pred             ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChhHHHHHHHHHhcCcceeEEEecC
Q 011491           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS  152 (484)
Q Consensus        77 ~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gde~~veQI~kQL~KLidVikV~dlt  152 (484)
                      |++|+||++|+|+||||+||+|+|+||||||+||+||+|+++++  |||+++||++.++|++|||+||+||++|+|++
T Consensus         1 mk~~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~g~~~~i~qi~kQl~KlidV~~V~dld   78 (78)
T d2fgca2           1 IREHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQIEKQAYKLVEVVKVTPID   78 (78)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECTTHHHHHHHHHTTSTTEEEEEECC
T ss_pred             CceEEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEEEcCHHHHHHHHHHHhCCcCEEEEEeCC
Confidence            68999999999999999999999999999999999999999985  99999999999999999999999999999985

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=1.4e-28  Score=200.20  Aligned_cols=74  Identities=46%  Similarity=0.785  Sum_probs=71.8

Q ss_pred             EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChhHHHHHHHHHhcCcceeEEEecC
Q 011491           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS  152 (484)
Q Consensus        79 khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gde~~veQI~kQL~KLidVikV~dlt  152 (484)
                      ||||+++|+|+||||+||+|+|+||||||+||+||+||++++  |||++.|+++.++|++|||+||+||++|.|+.
T Consensus         1 khtlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~~~~~~i~qi~kQL~KlidV~~V~dl~   76 (76)
T d2f1fa1           1 RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHKLVDVLRVSELG   76 (76)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESCHHHHHHHHHHHHHSTTEEEEEEGG
T ss_pred             CEEEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEEECCHHHHHHHHHHHhCCCCEEEEEeCC
Confidence            799999999999999999999999999999999999999985  99999999999999999999999999999973

>d2pc6a1 d.58.18.6 (A:78-163) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.92  E-value=1.2e-25  Score=185.89  Aligned_cols=83  Identities=36%  Similarity=0.449  Sum_probs=79.9

Q ss_pred             chhhhhhheeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecCc
Q 011491          154 EPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREK  233 (484)
Q Consensus       154 ~~~V~RELaLiKV~~~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~fGIlE~aRTG~iAl~Rg~  233 (484)
                      +++|+|||+|+||++++.+|.+|+++++.|+|+|||++++++++|+||+++|||+|++.|+||||+|++|||.+||+||+
T Consensus         2 e~~veREl~LvKv~~~~~~~~~i~~i~~~f~a~ivd~~~~~~iie~tG~~~~id~fi~~l~~~gi~Ei~RSG~vai~rg~   81 (86)
T d2pc6a1           2 EGYVERELMLVKVRAVGKDREEMKRLADIFRGNIIDVTNELYTIELTGTRSKLDGFLQAVDCNLILEIARTGVSGLSRGE   81 (86)
T ss_dssp             SCEEEEEEEEEEEECCTHHHHHHHHHHHHTTCEEEEEETTEEEEEEEECHHHHHHHHHHSCGGGEEEEEECCCEEEESTT
T ss_pred             cchheeEEEEEEEeCChhhHHHHHHHHHHcCcEEEEcCCCeEEEEEeCCHHHHHHHHHHhcccCCEEEEecCHhhhhcCc
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCC
Q 011491          234 LGD  236 (484)
Q Consensus       234 ~~~  236 (484)
                      ..+
T Consensus        82 ~~l   84 (86)
T d2pc6a1          82 RVL   84 (86)
T ss_dssp             CCT
T ss_pred             ccc
Confidence            654

>d2fgca1 d.58.18.6 (A:105-187) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=3e-25  Score=182.63  Aligned_cols=80  Identities=41%  Similarity=0.571  Sum_probs=76.8

Q ss_pred             CchhhhhhheeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecC
Q 011491          153 NEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRRE  232 (484)
Q Consensus       153 ~~~~V~RELaLiKV~~~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~fGIlE~aRTG~iAl~Rg  232 (484)
                      ++++|+|||||+||+++ ++|.+|+++++.|+|+|||++++++++|+||+++|||+|++.|+||||+|++|||++||+||
T Consensus         3 p~~~verEl~LvKv~~~-~~~~~i~~~~~~f~a~ivd~~~~~~iie~tg~~~~id~fi~~l~~~gi~EivRSG~vai~rG   81 (83)
T d2fgca1           3 PENRVEREMALIKVRFD-EDKQEIFQLVEIFRGKIIDVSREGAIIEITGARSKVEAFINLLPQKQVEEIARTGIVAMNRW   81 (83)
T ss_dssp             GGGEEEEEEEEEEEECS-SCHHHHHHHHHHTTCEEEEECSSEEEEEEEECHHHHHHHHHHSCGGGEEEEEECCCEEEECC
T ss_pred             chhhhhheeEEEEEecC-CCHHHHHHHHHHcCCEEEEcCCCeEEEEEeCCHHHHHHHHHHhhhcCCEEEEecCceeEecC
Confidence            46789999999999986 57999999999999999999999999999999999999999999999999999999999999


Q ss_pred             c
Q 011491          233 K  233 (484)
Q Consensus       233 ~  233 (484)
                      +
T Consensus        82 ~   82 (83)
T d2fgca1          82 N   82 (83)
T ss_dssp             C
T ss_pred             C
Confidence            6

>d2f1fa2 d.58.18.6 (A:78-163) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=3e-25  Score=183.67  Aligned_cols=82  Identities=30%  Similarity=0.524  Sum_probs=79.2

Q ss_pred             chhhhhhheeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCC-cEEEeeccceeeecC
Q 011491          154 EPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFG-IKELARTGKIALRRE  232 (484)
Q Consensus       154 ~~~V~RELaLiKV~~~~~~r~eI~~l~~~FrAkIVDvs~~sl~iE~TG~~~KIdafi~~L~~fG-IlE~aRTG~iAl~Rg  232 (484)
                      .++|+||||||||++++.+|.+|.++++.|+|+|||+++++++||+||+++|||+|++.|+||| |+|++|||.+||+||
T Consensus         2 g~~verEl~LvKv~~~~~~~~~i~~i~~~f~a~ivd~~~~~~iie~tG~~~~id~fi~~l~~~g~I~EivRSG~iai~rg   81 (86)
T d2f1fa2           2 GAHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLYTVQLAGTSGKLDAFLASIRDVAKIVEVARSGVVGLSRG   81 (86)
T ss_dssp             SCEEEEEEEEEEEECCTHHHHHHHHHHHHTTCEEEEECSSEEEEEEEECHHHHHHHHHHHTTTSEEEEEEECCCEEEEST
T ss_pred             cChheeEEEEEEEECChhhHHHHHHHHHhcCeEEEEccCCEEEEEEeCCHHHHHHHHHHhhccCCEEEEEcCCHhhhhcc
Confidence            4689999999999999999999999999999999999999999999999999999999999998 999999999999999


Q ss_pred             cCC
Q 011491          233 KLG  235 (484)
Q Consensus       233 ~~~  235 (484)
                      +..
T Consensus        82 ~~~   84 (86)
T d2f1fa2          82 DKI   84 (86)
T ss_dssp             TCC
T ss_pred             ccc
Confidence            764

>d2pc6a1 d.58.18.6 (A:78-163) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.91  E-value=2.1e-25  Score=184.40  Aligned_cols=81  Identities=33%  Similarity=0.489  Sum_probs=78.9

Q ss_pred             chhHHHhhheeEEecCccchHHHHHHHHHcCcEEEEecCCEEEEEEeCCHHHHHHHHHHhccCCcEEEeecceeEeecCC
Q 011491          391 LPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLEPYGICEVARTGRVALVRES  470 (484)
Q Consensus       391 ~~~V~REL~LIKV~~~~~~r~eI~~la~ifrakIVDvs~~si~iE~TG~~~Kidafi~lL~pyGIlEvaRTG~vAl~Rg~  470 (484)
                      +++|+|||+|+||++++.+|.+|+++++.|+|+|||++++++++|+||+++|||+|++.|+||||+|++|||.+||+||+
T Consensus         2 e~~veREl~LvKv~~~~~~~~~i~~i~~~f~a~ivd~~~~~~iie~tG~~~~id~fi~~l~~~gi~Ei~RSG~vai~rg~   81 (86)
T d2pc6a1           2 EGYVERELMLVKVRAVGKDREEMKRLADIFRGNIIDVTNELYTIELTGTRSKLDGFLQAVDCNLILEIARTGVSGLSRGE   81 (86)
T ss_dssp             SCEEEEEEEEEEEECCTHHHHHHHHHHHHTTCEEEEEETTEEEEEEEECHHHHHHHHHHSCGGGEEEEEECCCEEEESTT
T ss_pred             cchheeEEEEEEEeCChhhHHHHHHHHHHcCcEEEEcCCCeEEEEEeCCHHHHHHHHHHhcccCCEEEEecCHhhhhcCc
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             C
Q 011491          471 G  471 (484)
Q Consensus       471 ~  471 (484)
                      .
T Consensus        82 ~   82 (86)
T d2pc6a1          82 R   82 (86)
T ss_dssp             C
T ss_pred             c
Confidence            6

>d2fgca1 d.58.18.6 (A:105-187) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=4.1e-25  Score=181.79  Aligned_cols=80  Identities=34%  Similarity=0.515  Sum_probs=76.7

Q ss_pred             CchhHHHhhheeEEecCccchHHHHHHHHHcCcEEEEecCCEEEEEEeCCHHHHHHHHHHhccCCcEEEeecceeEeecC
Q 011491          390 HLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLEPYGICEVARTGRVALVRE  469 (484)
Q Consensus       390 ~~~~V~REL~LIKV~~~~~~r~eI~~la~ifrakIVDvs~~si~iE~TG~~~Kidafi~lL~pyGIlEvaRTG~vAl~Rg  469 (484)
                      ++++|+|||+|+||+++ .+|.+|+++++.|+|+|||++++++++|+||+++|||+|++.|+||||+|++|||++||.||
T Consensus         3 p~~~verEl~LvKv~~~-~~~~~i~~~~~~f~a~ivd~~~~~~iie~tg~~~~id~fi~~l~~~gi~EivRSG~vai~rG   81 (83)
T d2fgca1           3 PENRVEREMALIKVRFD-EDKQEIFQLVEIFRGKIIDVSREGAIIEITGARSKVEAFINLLPQKQVEEIARTGIVAMNRW   81 (83)
T ss_dssp             GGGEEEEEEEEEEEECS-SCHHHHHHHHHHTTCEEEEECSSEEEEEEEECHHHHHHHHHHSCGGGEEEEEECCCEEEECC
T ss_pred             chhhhhheeEEEEEecC-CCHHHHHHHHHHcCCEEEEcCCCeEEEEEeCCHHHHHHHHHHhhhcCCEEEEecCceeEecC
Confidence            56789999999999986 57999999999999999999999999999999999999999999999999999999999999


Q ss_pred             C
Q 011491          470 S  470 (484)
Q Consensus       470 ~  470 (484)
                      +
T Consensus        82 ~   82 (83)
T d2fgca1          82 N   82 (83)
T ss_dssp             C
T ss_pred             C
Confidence            6

>d2f1fa2 d.58.18.6 (A:78-163) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=5.8e-25  Score=181.88  Aligned_cols=81  Identities=33%  Similarity=0.467  Sum_probs=78.5

Q ss_pred             chhHHHhhheeEEecCccchHHHHHHHHHcCcEEEEecCCEEEEEEeCCHHHHHHHHHHhccCC-cEEEeecceeEeecC
Q 011491          391 LPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLEPYG-ICEVARTGRVALVRE  469 (484)
Q Consensus       391 ~~~V~REL~LIKV~~~~~~r~eI~~la~ifrakIVDvs~~si~iE~TG~~~Kidafi~lL~pyG-IlEvaRTG~vAl~Rg  469 (484)
                      .++|+||||||||++++.+|.+|.++++.|+|+|||++++++++|+||+++|||+|++.|+||| |+|++|||++||+||
T Consensus         2 g~~verEl~LvKv~~~~~~~~~i~~i~~~f~a~ivd~~~~~~iie~tG~~~~id~fi~~l~~~g~I~EivRSG~iai~rg   81 (86)
T d2f1fa2           2 GAHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLYTVQLAGTSGKLDAFLASIRDVAKIVEVARSGVVGLSRG   81 (86)
T ss_dssp             SCEEEEEEEEEEEECCTHHHHHHHHHHHHTTCEEEEECSSEEEEEEEECHHHHHHHHHHHTTTSEEEEEEECCCEEEEST
T ss_pred             cChheeEEEEEEEECChhhHHHHHHHHHhcCeEEEEccCCEEEEEEeCCHHHHHHHHHHhhccCCEEEEEcCCHhhhhcc
Confidence            3689999999999999999999999999999999999999999999999999999999999998 999999999999999


Q ss_pred             CC
Q 011491          470 SG  471 (484)
Q Consensus       470 ~~  471 (484)
                      +.
T Consensus        82 ~~   83 (86)
T d2f1fa2          82 DK   83 (86)
T ss_dssp             TC
T ss_pred             cc
Confidence            76

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.57  E-value=2.4e-15  Score=119.56  Aligned_cols=62  Identities=19%  Similarity=0.445  Sum_probs=55.9

Q ss_pred             ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHH
Q 011491           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQ  138 (484)
Q Consensus        77 ~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQ  138 (484)
                      |+.++|||+++|+||+|+||+++|++|||||+||++++|++++++.++++..++..++|.+|
T Consensus         1 m~~~QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~Riiv~~~e~a~~~L~~~   62 (70)
T d2f06a2           1 MVAKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVSDPDKAYKALKDN   62 (70)
T ss_dssp             SEEEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEESCHHHHHHHHHHT
T ss_pred             CceEEEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEEEEECChHHHHHHHHHC
Confidence            77899999999999999999999999999999999999999999999998767766655544

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.55  E-value=3e-15  Score=118.94  Aligned_cols=62  Identities=23%  Similarity=0.358  Sum_probs=52.8

Q ss_pred             ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHH
Q 011491          312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQL  375 (484)
Q Consensus       312 ~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQ  375 (484)
                      |+.++||++++|+||+|+||+++|++|||||+|+++++|++++++||  +++..++..++|.+|
T Consensus         1 m~~~QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~Ri--iv~~~e~a~~~L~~~   62 (70)
T d2f06a2           1 MVAKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRG--IVSDPDKAYKALKDN   62 (70)
T ss_dssp             SEEEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEE--EESCHHHHHHHHHHT
T ss_pred             CceEEEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEEE--EECChHHHHHHHHHC
Confidence            67899999999999999999999999999999999999999999997  455444445444433

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=99.12  E-value=1.8e-10  Score=92.99  Aligned_cols=73  Identities=14%  Similarity=0.302  Sum_probs=66.4

Q ss_pred             EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhcCcceeEEEec
Q 011491           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI  151 (484)
Q Consensus        79 khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~KLidVikV~dl  151 (484)
                      .|.|.+.-+|+||+|++|+++|+++|+||.++.++...+.+...+++..|+...++++++|.++..|++|..+
T Consensus        11 ~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~~~~~a~~~i~~D~~~~~~v~~~i~~l~~Vi~vR~l   83 (84)
T d1sc6a3          11 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVAEKALQAMKAIPGTIRARLL   83 (84)
T ss_dssp             SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEECCHHHHHHHHHHHHTSTTEEEEEEC
T ss_pred             CeEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccCCCCcEEEEEEECCCCCHHHHHHHHHCCCCEEEEEEe
Confidence            4789999999999999999999999999999999988777776677778889999999999999999999754

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.08  E-value=9.8e-11  Score=93.61  Aligned_cols=74  Identities=14%  Similarity=0.189  Sum_probs=67.2

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEeccC
Q 011491          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDIT  389 (484)
Q Consensus       314 ~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dlt  389 (484)
                      -|.|.+..+|+||+|.+|+++|+++|+||.++.+++....+...|.+.+++  ..-++++++|+++.+|++|..++
T Consensus         3 G~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~vD~--~~~~~vl~~I~~~~~V~~v~~i~   76 (78)
T d1ygya3           3 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQ--DVPDDVRTAIAAAVDAYKLEVVD   76 (78)
T ss_dssp             SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESS--CCCHHHHHHHHHHHTEEEEEEEE
T ss_pred             ceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEcCC--CccHHHHHHHHcCCCeEEEEEEe
Confidence            378999999999999999999999999999999999999999999998854  46689999999999999998653

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=99.02  E-value=6.6e-10  Score=89.54  Aligned_cols=73  Identities=16%  Similarity=0.307  Sum_probs=64.5

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEecc
Q 011491          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI  388 (484)
Q Consensus       314 ~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~dl  388 (484)
                      .|.|.+.-+|+||+|.+|+++|+++|+||.++.++...+.+.  ..+++..|++..++++++|.++.+|++|..+
T Consensus        11 ~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~~~~~--a~~~i~~D~~~~~~v~~~i~~l~~Vi~vR~l   83 (84)
T d1sc6a3          11 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGY--VVIDIEADEDVAEKALQAMKAIPGTIRARLL   83 (84)
T ss_dssp             SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEE--EEEEEECCHHHHHHHHHHHHTSTTEEEEEEC
T ss_pred             CeEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccCCCCcE--EEEEEECCCCCHHHHHHHHHCCCCEEEEEEe
Confidence            489999999999999999999999999999999998766554  4566677888999999999999999999754

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.01  E-value=2.7e-10  Score=91.04  Aligned_cols=72  Identities=15%  Similarity=0.264  Sum_probs=62.7

Q ss_pred             EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChhHHHHHHHHHhcCcceeEEEecC
Q 011491           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS  152 (484)
Q Consensus        79 khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~--iTIVV~gde~~veQI~kQL~KLidVikV~dlt  152 (484)
                      -|.|.+..+|+||+|.+|+++|+++|+||.++.++.....+.  |.+.+  |...-++++++|.++.+|++|..++
T Consensus         3 G~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~v--D~~~~~~vl~~I~~~~~V~~v~~i~   76 (78)
T d1ygya3           3 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL--DQDVPDDVRTAIAAAVDAYKLEVVD   76 (78)
T ss_dssp             SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE--SSCCCHHHHHHHHHHHTEEEEEEEE
T ss_pred             ceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEc--CCCccHHHHHHHHcCCCeEEEEEEe
Confidence            478999999999999999999999999999999998887774  55555  5567789999999999999998653

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.55  E-value=6.4e-08  Score=76.85  Aligned_cols=72  Identities=18%  Similarity=0.169  Sum_probs=58.0

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecC-CCCeEEEEEEEeCChHHHHHHHHHHhcccceEEEec
Q 011491          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE-KEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQD  387 (484)
Q Consensus       316 tLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te-~~~iSRiTIVV~gde~~ieql~kQL~KLidVi~V~d  387 (484)
                      -|.+.++|+||+|+.|+++|+..|.||.+++..... ...-..|+|-+...+..++.|+.+|+++-+|.+|+.
T Consensus         3 ~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~~~~~l~~ll~kL~~l~~V~~Ver   75 (77)
T d1y7pa2           3 GLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGGDFEKILERVKTFDYIIEIEE   75 (77)
T ss_dssp             EEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSSCHHHHHHHHHTCTTEEEEEE
T ss_pred             eEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEEEEEcCcccHHHHHHHHHcCCCeeEEEe
Confidence            588999999999999999999999999999987533 355668888887555469999999999999999973

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.50  E-value=1.1e-07  Score=75.36  Aligned_cols=70  Identities=14%  Similarity=0.229  Sum_probs=55.6

Q ss_pred             EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-c--EEEEEEeCChhHHHHHHHHHhcCcceeEEEe
Q 011491           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-A--LFTIVVSGTERVLRQVVEQLNKLVNVIKVED  150 (484)
Q Consensus        81 tISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~--~iTIVV~gde~~veQI~kQL~KLidVikV~d  150 (484)
                      -|.+.++|+||+|+.|+.+|+..|.||.+++.....+. .  .++|-+...+..++.++.+|+++-.|++|+.
T Consensus         3 ~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~~~~~l~~ll~kL~~l~~V~~Ver   75 (77)
T d1y7pa2           3 GLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGGDFEKILERVKTFDYIIEIEE   75 (77)
T ss_dssp             EEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSSCHHHHHHHHHTCTTEEEEEE
T ss_pred             eEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEEEEEcCcccHHHHHHHHHcCCCeeEEEe
Confidence            58899999999999999999999999999997654332 2  4888887655469999999999999999974

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.22  E-value=2e-06  Score=68.68  Aligned_cols=67  Identities=19%  Similarity=0.281  Sum_probs=57.0

Q ss_pred             ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhcCc
Q 011491           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLV  143 (484)
Q Consensus        77 ~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~KLi  143 (484)
                      -+.++|+++-.|+||++++|+++++++|.||..+.....++.-.+.+.+.+++..++++.+.|++|-
T Consensus         3 ~~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~~~~~~~~~~v~~~~~~~~~l~~~L~~l~   69 (86)
T d1u8sa1           3 TQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSPSNITRVETTLPLLG   69 (86)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECHHHHHHHHHHHHHHH
T ss_pred             ccEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEECCeeEEEEEEEcCcccHHHHHHHHHHHH
Confidence            3578999999999999999999999999999998877665544467778888888999999998774

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.17  E-value=1.7e-06  Score=67.54  Aligned_cols=53  Identities=17%  Similarity=0.248  Sum_probs=45.3

Q ss_pred             EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHH
Q 011491           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLR  133 (484)
Q Consensus        81 tISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~ve  133 (484)
                      +|+|.++|+||.|++++.+|+..|+||+++.+..+.+.+.+.+.++..++..+
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~~~~vl~vdd~~~a~~   53 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSNMDKCIE   53 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESCHHHHHH
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcCCCcEEEEEEECCHHHHHH
Confidence            58999999999999999999999999999999998877778888864343333

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.15  E-value=1.8e-06  Score=68.23  Aligned_cols=69  Identities=20%  Similarity=0.311  Sum_probs=52.9

Q ss_pred             eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCC-hhHHHHHHHHHhcCccee
Q 011491           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT-ERVLRQVVEQLNKLVNVI  146 (484)
Q Consensus        78 ~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gd-e~~veQI~kQL~KLidVi  146 (484)
                      ||++|++.-.|+||+++.|+++++.+|.||..++.....+.-.+.+.+..+ +..++++.++|+++-+-.
T Consensus         1 Mk~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~~~~f~~~~~v~~~~~~~~~~l~~~l~~la~~l   70 (83)
T d1zpva1           1 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQDFTYLRNEFEAFGQTL   70 (83)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSCCCHHHHHHHHHHHHHHH
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEeCCEEEEEEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            679999999999999999999999999999999876543222255555533 334788999987765433

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.02  E-value=7.3e-06  Score=65.32  Aligned_cols=65  Identities=17%  Similarity=0.284  Sum_probs=55.8

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcc
Q 011491          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKL  379 (484)
Q Consensus       313 ~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KL  379 (484)
                      ++++|++...|+||++++|+++++++|.||..+.....  .+...+.+.+.+++..++++.+.|++|
T Consensus         4 ~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~--~~~~~~~~~v~~~~~~~~~l~~~L~~l   68 (86)
T d1u8sa1           4 QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMF--GKEFTLLMLISGSPSNITRVETTLPLL   68 (86)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEE--TTEEEEEEEEEECHHHHHHHHHHHHHH
T ss_pred             cEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEE--CCeeEEEEEEEcCcccHHHHHHHHHHH
Confidence            35799999999999999999999999999988777555  456677888888888899999998877

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.01  E-value=6.9e-06  Score=64.76  Aligned_cols=67  Identities=15%  Similarity=0.242  Sum_probs=52.4

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeC-ChHHHHHHHHHHhcccc
Q 011491          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG-TDESIGKLVQLLHKLID  381 (484)
Q Consensus       313 ~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~g-de~~ieql~kQL~KLid  381 (484)
                      ||++|++.-.|+||+++.||++++.+|.||..+......  +.-.|.+.+.. +...++++.++|+++-+
T Consensus         1 Mk~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~~--~~f~~~~~v~~~~~~~~~~l~~~l~~la~   68 (83)
T d1zpva1           1 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLD--EYFTMMAVVSSDEKQDFTYLRNEFEAFGQ   68 (83)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEET--TEEEEEEEEEESSCCCHHHHHHHHHHHHH
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEeC--CEEEEEEEEEEecCCCHHHHHHHHHHHHH
Confidence            689999999999999999999999999999999876543  45555555552 23347888888876643

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.84  E-value=2.3e-05  Score=60.99  Aligned_cols=57  Identities=16%  Similarity=0.179  Sum_probs=45.0

Q ss_pred             EEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHH
Q 011491          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQL  375 (484)
Q Consensus       316 tLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQ  375 (484)
                      .|+|.++|+||-|.+++.+|+..|+||+++.+..+.+.++  +.+.++ |.+...++.++
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~~~--~vl~vd-d~~~a~~~L~~   57 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVAN--VVIRPS-NMDKCIEVLKE   57 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEE--EEEEES-CHHHHHHHHHH
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcCCCcEE--EEEEEC-CHHHHHHHHHH
Confidence            4899999999999999999999999999999988765444  555565 55555555443

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=97.54  E-value=5.2e-05  Score=61.02  Aligned_cols=68  Identities=13%  Similarity=0.134  Sum_probs=46.2

Q ss_pred             EEEE--EEEeCchhHHHHHHHHHhccCceeeeeeeeecC------CCCeEEEEEEEeC-ChHHHHHHHHHHhcccce
Q 011491          315 HTLS--MLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE------KEGLSCITTVVPG-TDESIGKLVQLLHKLIDL  382 (484)
Q Consensus       315 htLs--ilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te------~~~iSRiTIVV~g-de~~ieql~kQL~KLidV  382 (484)
                      |++.  |...|+||++.+|+++|+.||.||..|....-.      ..+.-.|.+++.. ..-.+++|.++|+.|-+-
T Consensus         5 ~tv~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~~a~~~~~~~~~f~~~~~~~~p~~~~~~~l~~~l~~l~~~   81 (93)
T d1u8sa2           5 YTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDSGCNLMQLQEEFDALCTA   81 (93)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             eEEEEEEEECCCCCHHHHHHHHHHHcCCCchhhhcccccccCCcccCccEEEEEEEEcCccccHHHHHHHHHHHHHH
Confidence            5555  557999999999999999999999999864321      2234445555442 234567777777766543

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=97.51  E-value=7.6e-05  Score=60.05  Aligned_cols=68  Identities=21%  Similarity=0.285  Sum_probs=48.3

Q ss_pred             EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecC----C--CcE--EEEEEeC-ChhHHHHHHHHHhcCcceeEE
Q 011491           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV----D--KAL--FTIVVSG-TERVLRQVVEQLNKLVNVIKV  148 (484)
Q Consensus        81 tISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Te----d--~~~--iTIVV~g-de~~veQI~kQL~KLidVikV  148 (484)
                      .+.|...||||++.+|+++|+.||.||+.|....-.    +  .+.  |.+++.. .+..++++.++|+.|-+-+.|
T Consensus         8 ~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~~a~~~~~~~~~f~~~~~~~~p~~~~~~~l~~~l~~l~~~l~v   84 (93)
T d1u8sa2           8 EVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDSGCNLMQLQEEFDALCTALDV   84 (93)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECTTSCHHHHHHHHHHHHHHHTC
T ss_pred             EEEEEECCCCCHHHHHHHHHHHcCCCchhhhcccccccCCcccCccEEEEEEEEcCccccHHHHHHHHHHHHHHcee
Confidence            455669999999999999999999999999864211    1  123  5555552 244578888888877655444

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.89  E-value=0.0022  Score=50.52  Aligned_cols=65  Identities=18%  Similarity=0.255  Sum_probs=52.4

Q ss_pred             EeCchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEeCC-hHHHHHHHHHHhcccceEEE
Q 011491          321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPGT-DESIGKLVQLLHKLIDLHEV  385 (484)
Q Consensus       321 VeN~pGVL~RVtglFsRRGyNIeSLtVg~te~-~~iSRiTIVV~gd-e~~ieql~kQL~KLidVi~V  385 (484)
                      ++|+||.|.++.++|+.+|+|+.+|.--|... ++-..+-+-++|. ++.+.+++++|++.-.-.+|
T Consensus         9 ~~d~pGaL~~vL~~F~~~~INLt~IeSRP~~~~~~~Y~F~id~~g~~~~~~~~~l~~L~~~~~~~kv   75 (80)
T d2qmwa2           9 MHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQADSAITTDIKKVIAILETLDFKVEM   75 (80)
T ss_dssp             SSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEESCCSCHHHHHHHHHHHHTTEEEEE
T ss_pred             CCCCCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEecCCcHHHHHHHHHHHHhcCcEEE
Confidence            47999999999999999999999999887654 4667777778763 45689999999887554443

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.75  E-value=0.0037  Score=49.13  Aligned_cols=65  Identities=14%  Similarity=0.224  Sum_probs=49.5

Q ss_pred             EEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-c-E-EEEEEeCC-hhHHHHHHHHHhcCcceeEE
Q 011491           84 VFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-A-L-FTIVVSGT-ERVLRQVVEQLNKLVNVIKV  148 (484)
Q Consensus        84 ilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~-~-~-iTIVV~gd-e~~veQI~kQL~KLidVikV  148 (484)
                      .-.+|+||.|.++.++|+.+|+|+.+|---|.... + . +=|-++|. ++.+++++++|++.-.-+++
T Consensus         7 ~~~~d~pGaL~~vL~~F~~~~INLt~IeSRP~~~~~~~Y~F~id~~g~~~~~~~~~l~~L~~~~~~~kv   75 (80)
T d2qmwa2           7 TPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQADSAITTDIKKVIAILETLDFKVEM   75 (80)
T ss_dssp             EESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEESCCSCHHHHHHHHHHHHTTEEEEE
T ss_pred             EeCCCCCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEecCCcHHHHHHHHHHHHhcCcEEE
Confidence            34579999999999999999999999988776544 2 3 55556553 44688999999887555444

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.61  E-value=0.0036  Score=51.04  Aligned_cols=73  Identities=14%  Similarity=0.192  Sum_probs=57.0

Q ss_pred             CCCCceEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCC-CCeEEEEEEEeCC-hHHHHHHHHHHhccc
Q 011491          308 DPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPGT-DESIGKLVQLLHKLI  380 (484)
Q Consensus       308 ~~~~~~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~-~~iSRiTIVV~gd-e~~ieql~kQL~KLi  380 (484)
                      .+++-.+-.|.+.+.|+||.|..+...|+++|+|+..|.--|+.. +.-..+-|-+.|. ++.+.++++.|++-+
T Consensus        10 ~~~~~~ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y~F~id~eg~~~~~i~~~l~~L~~~~   84 (97)
T d1phza1          10 NSNQNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLDKRTKPVLGSIIKSLRNDI   84 (97)
T ss_dssp             CCCSSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBCGGGHHHHHHHHHHHHHTT
T ss_pred             CCCCCCcEEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeeccCCCCceEEEEEEcccCChHHHHHHHHHHHHhh
Confidence            345556778888899999999999999999999999999888654 3445566666664 456888888887654

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.24  E-value=0.0069  Score=49.34  Aligned_cols=68  Identities=12%  Similarity=0.208  Sum_probs=51.4

Q ss_pred             cceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc-E--EEEEEeCC-hhHHHHHHHHHhcCc
Q 011491           76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA-L--FTIVVSGT-ERVLRQVVEQLNKLV  143 (484)
Q Consensus        76 ~~~khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~-~--iTIVV~gd-e~~veQI~kQL~KLi  143 (484)
                      +..+-.|.+.+.|+||.|.++...|+++|+|+..|.--|..... -  +-|-+.|. +..++++++.|.+-+
T Consensus        13 ~~~ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y~F~id~eg~~~~~i~~~l~~L~~~~   84 (97)
T d1phza1          13 QNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLDKRTKPVLGSIIKSLRNDI   84 (97)
T ss_dssp             SSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBCGGGHHHHHHHHHHHHHTT
T ss_pred             CCCcEEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeeccCCCCceEEEEEEcccCChHHHHHHHHHHHHhh
Confidence            34467888889999999999999999999999999888765442 2  44445553 455777777776543

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=95.11  E-value=0.014  Score=44.21  Aligned_cols=51  Identities=25%  Similarity=0.383  Sum_probs=42.4

Q ss_pred             eCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhc
Q 011491          322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK  378 (484)
Q Consensus       322 eN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~K  378 (484)
                      .++||++.|+.+.++..|+||+-++.+.+|    .+|+++|+.+  ..++.++-|++
T Consensus        12 ~~~~gi~arif~~L~~~~InV~mIsq~~Se----~~Is~~V~~~--d~~~Av~~Lh~   62 (67)
T d2hmfa2          12 RGAKGIAGKIFTAVSESGANIKMIAQGSSE----VNISFVIDEK--DLLNCVRKLHE   62 (67)
T ss_dssp             TTCTTHHHHHHHHHHHTTCCCCEEEESSCS----SEEEEEEEGG--GHHHHHHHHHH
T ss_pred             CCCccHHHHHHHHHHHcCCChHHeeecCcc----ceEEEEEeHH--HHHHHHHHHHH
Confidence            689999999999999999999999998776    4699999844  46666666654

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=94.20  E-value=0.039  Score=41.69  Aligned_cols=52  Identities=23%  Similarity=0.342  Sum_probs=40.5

Q ss_pred             EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhc
Q 011491           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK  141 (484)
Q Consensus        86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~K  141 (484)
                      ..++||++.|+.+.++..|+||+-++.+.++  -.++++|+.+  ..++.++.|++
T Consensus        11 m~~~~gi~arif~~L~~~~InV~mIsq~~Se--~~Is~~V~~~--d~~~Av~~Lh~   62 (67)
T d2hmfa2          11 MRGAKGIAGKIFTAVSESGANIKMIAQGSSE--VNISFVIDEK--DLLNCVRKLHE   62 (67)
T ss_dssp             TTTCTTHHHHHHHHHHHTTCCCCEEEESSCS--SEEEEEEEGG--GHHHHHHHHHH
T ss_pred             CCCCccHHHHHHHHHHHcCCChHHeeecCcc--ceEEEEEeHH--HHHHHHHHHHH
Confidence            4689999999999999999999999988654  3488888743  35555555543

>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=93.94  E-value=0.032  Score=45.10  Aligned_cols=59  Identities=15%  Similarity=0.251  Sum_probs=45.3

Q ss_pred             EEEEEEE---eCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhcc
Q 011491          315 HTLSMLV---NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKL  379 (484)
Q Consensus       315 htLsilV---eN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~KL  379 (484)
                      ..+++.-   .++||++.|+.+.+++.|+||+-++.+.+|.    .|+++|+.+  ..++.++.|++.
T Consensus        16 a~IsivG~~m~~~~Gi~arif~~La~~~InV~mIsQ~~Se~----~Isf~V~~~--d~~~a~~~L~~~   77 (100)
T d2hmfa3          16 ALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSET----NISLVVSEE--DVDKALKALKRE   77 (100)
T ss_dssp             EEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCTTC----CEEEEECST--THHHHHHHHHHH
T ss_pred             EEEEEECCCCCCCcchHHHHHHHHHHcCCCHHHeeccCCcc----eEEEEEeHH--HHHHHHHHHHHH
Confidence            3455543   7999999999999999999999999887764    589999855  355555555544

>d2cdqa3 d.58.18.10 (A:420-494) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.71  E-value=0.034  Score=42.99  Aligned_cols=51  Identities=25%  Similarity=0.349  Sum_probs=41.5

Q ss_pred             EeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHh
Q 011491          321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLH  377 (484)
Q Consensus       321 VeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~  377 (484)
                      ..++||++.|+.+.++..|+||+-++-|.+|    .+|+++|+.  +..++.++-|+
T Consensus        10 ~~~~~Giaarif~aL~~~~InV~mIsqg~se----~~Is~vV~~--~d~~~Av~~Lh   60 (75)
T d2cdqa3          10 VQHSSLILERAFHVLYTKGVNVQMISQGASK----VNISFIVNE--AEAEGCVQALH   60 (75)
T ss_dssp             GGGHHHHHHHHHHHHHHHTCCCSEEEECTTC----SEEEEEEEH--HHHHHHHHHHH
T ss_pred             CCCChhHHHHHHHHHHHcCCceEEEEcCccc----eEEEEEEeH--HHHHHHHHHHH
Confidence            3689999999999999999999999988766    459999973  45566666664

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.52  E-value=0.064  Score=42.70  Aligned_cols=52  Identities=17%  Similarity=0.300  Sum_probs=39.5

Q ss_pred             eCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh--------HHHHHHHHHHhcc
Q 011491          322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD--------ESIGKLVQLLHKL  379 (484)
Q Consensus       322 eN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde--------~~ieql~kQL~KL  379 (484)
                      .++||++.||.+.|++.|+||+-++.++      ..|+++++.++        +.+.++.+.|+++
T Consensus        24 ~~~~G~~a~if~~La~~~Inv~~Is~Se------~~is~~v~~~~~~~a~~~~~~~~~~~~el~~i   83 (91)
T d2cdqa2          24 LGQVGFLAKVFSIFEELGISVDVVATSE------VSISLTLDPSKLWSRELIQQELDHVVEELEKI   83 (91)
T ss_dssp             TTCTTHHHHHHHHHHHTTCCEEEEEEET------TEEEEEECCGGGSSSCCCHHHHHHHHHHHTTT
T ss_pred             CCCccHHHHHHHHHHHcCCcEEEEEecC------CeEEEEEchhHHHHHHHHHHHHHHHHHHHhCC
Confidence            4899999999999999999999998542      26889997542        2355666666554

>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=92.51  E-value=0.095  Score=42.22  Aligned_cols=58  Identities=21%  Similarity=0.322  Sum_probs=42.8

Q ss_pred             EEEEE---EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHHhcC
Q 011491           81 TISVF---VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKL  142 (484)
Q Consensus        81 tISil---VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL~KL  142 (484)
                      .|++.   ..++||+++||...|++.|+||+-++.+.++.  -++++|+.++  .++.++.|++.
T Consensus        17 ~IsivG~~m~~~~Gi~arif~~La~~~InV~mIsQ~~Se~--~Isf~V~~~d--~~~a~~~L~~~   77 (100)
T d2hmfa3          17 LINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSET--NISLVVSEED--VDKALKALKRE   77 (100)
T ss_dssp             EEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCTTC--CEEEEECSTT--HHHHHHHHHHH
T ss_pred             EEEEECCCCCCCcchHHHHHHHHHHcCCCHHHeeccCCcc--eEEEEEeHHH--HHHHHHHHHHH
Confidence            45553   47999999999999999999999999776543  3888887543  44455555443

>d1rwua_ d.58.54.1 (A:) Hypothetical protein ybeD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: YbeD/HP0495-like
family: YbeD-like
domain: Hypothetical protein ybeD
species: Escherichia coli [TaxId: 562]

Probab=91.66  E-value=0.81  Score=35.52  Aligned_cols=73  Identities=18%  Similarity=0.221  Sum_probs=64.6

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEEE
Q 011491          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEV  385 (484)
Q Consensus       313 ~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gde~~ieql~kQL~KLidVi~V  385 (484)
                      ..|.+.+...|.++..+.|..++.+..-+-++++.-++-...+-.+|+.+. .+++++..|-+.|.+.-.|.=|
T Consensus        13 c~y~~KvIg~~~~~~~~~v~~i~~~~~~~~~~~~~k~Ss~GkY~Svtv~i~~~s~eqv~~iY~~l~~~~~Vkmv   86 (87)
T d1rwua_          13 TPFTYKVMGQALPELVDQVVEVVQRHAPGDYTPTVKPSSKGNYHSVSITINATHIEQVETLYEELGKIDIVRMV   86 (87)
T ss_dssp             CCEEEEEEEECCTTHHHHHHHHHHHHSSSCCCEEEEESSCSSEEEEEEEECCSSHHHHHHHHHHHSCSSSCEEE
T ss_pred             CCcEEEEEEECChhHHHHHHHHHHHhCCCCCcceeecCCCCcEEEEEEEEEECCHHHHHHHHHHHhcCCCEEEe
Confidence            458999999999999999999999876677888889999999999999987 5788999999999998887643

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.40  E-value=0.24  Score=39.18  Aligned_cols=38  Identities=11%  Similarity=0.331  Sum_probs=31.4

Q ss_pred             cCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCC
Q 011491           87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT  128 (484)
Q Consensus        87 eN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gd  128 (484)
                      .++||+++||...|++.|+||+-++.++    .-++++++.+
T Consensus        24 ~~~~G~~a~if~~La~~~Inv~~Is~Se----~~is~~v~~~   61 (91)
T d2cdqa2          24 LGQVGFLAKVFSIFEELGISVDVVATSE----VSISLTLDPS   61 (91)
T ss_dssp             TTCTTHHHHHHHHHHHTTCCEEEEEEET----TEEEEEECCG
T ss_pred             CCCccHHHHHHHHHHHcCCcEEEEEecC----CeEEEEEchh
Confidence            5899999999999999999999998532    2477777643

>d2cdqa3 d.58.18.10 (A:420-494) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.12  E-value=0.12  Score=39.72  Aligned_cols=50  Identities=22%  Similarity=0.307  Sum_probs=39.0

Q ss_pred             EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChhHHHHHHHHH
Q 011491           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQL  139 (484)
Q Consensus        86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~~veQI~kQL  139 (484)
                      ..++||+++|+.+.++..|+||+-++-|.++  .-|+++|+.  +..+..++.|
T Consensus        10 ~~~~~Giaarif~aL~~~~InV~mIsqg~se--~~Is~vV~~--~d~~~Av~~L   59 (75)
T d2cdqa3          10 VQHSSLILERAFHVLYTKGVNVQMISQGASK--VNISFIVNE--AEAEGCVQAL   59 (75)
T ss_dssp             GGGHHHHHHHHHHHHHHHTCCCSEEEECTTC--SEEEEEEEH--HHHHHHHHHH
T ss_pred             CCCChhHHHHHHHHHHHcCCceEEEEcCccc--eEEEEEEeH--HHHHHHHHHH
Confidence            4689999999999999999999999988654  348888874  3344455555

>d3ceda1 d.58.18.13 (A:247-341) Methionine import ATP-binding protein MetN2 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: NIL domain-like
domain: Methionine import ATP-binding protein MetN2
species: Staphylococcus aureus [TaxId: 1280]

Probab=89.62  E-value=0.49  Score=37.41  Aligned_cols=63  Identities=13%  Similarity=0.200  Sum_probs=49.4

Q ss_pred             eeEEecCc--cchHHHHHHHHHcC-------cEEEEecC---CEEEEEEeC-CHHHHHHHHHHhccCCc-EEEeecc
Q 011491          400 LIKIAVNT--AARRDVLDIAKIFR-------ARAVDVSD---HTITLELTG-DLNKIIALQRLLEPYGI-CEVARTG  462 (484)
Q Consensus       400 LIKV~~~~--~~r~eI~~la~ifr-------akIVDvs~---~si~iE~TG-~~~Kidafi~lL~pyGI-lEvaRTG  462 (484)
                      ++|+....  ...+-|-++++.|+       |+|=.+..   ..++++++| +++++++.++.|+..|+ +|+.+-|
T Consensus        19 lvrL~F~G~~a~~Pvis~l~r~~~v~vnIL~g~I~~i~~~~~G~Liv~l~G~~~~~i~~ai~~L~~~~v~vEVi~~g   95 (95)
T d3ceda1          19 IVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQVKMEVLRHG   95 (95)
T ss_dssp             EEEEEEEEESCHHHHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred             EEEEEEeCCccCchHHHHHHHHhCCceEEEEEEeEEeCCeeEEEEEEEEecCCHHHHHHHHHHHHHcCCEEEEecCC
Confidence            67776543  44567888888775       55555665   679999999 78889999999999996 7988766

>d2j0wa2 d.58.18.10 (A:295-385) Aspartokinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Escherichia coli [TaxId: 562]

Probab=88.62  E-value=0.077  Score=42.13  Aligned_cols=55  Identities=18%  Similarity=0.308  Sum_probs=40.5

Q ss_pred             eCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHH-------HHHHHHHHhcccce
Q 011491          322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDES-------IGKLVQLLHKLIDL  382 (484)
Q Consensus       322 eN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~-------ieql~kQL~KLidV  382 (484)
                      .++||+++||.+.|++.|+||+-++.+  |    .+|+++++.++..       .+.+.+.|+|+-+|
T Consensus        25 ~~~~G~~~~if~~L~~~~Inv~mis~S--e----~~is~~v~~~~~~~av~~L~~~~~~~eL~~~~~V   86 (91)
T d2j0wa2          25 LHSRGFLAEVFGILARHNISVDLITTS--E----VSVALTLDTTGSTSTGDTLLTQSLLMELSALCRV   86 (91)
T ss_dssp             SCHHHHHHHHTTTTTTTTCCCSEEEEE--T----TEEEEEECCCCCSSTTCCSSCHHHHHHHHHHSCE
T ss_pred             CCCcCHHHHHHHHHHHcCCcEEEEEcc--C----cEEEEEEchhHHHHHHHHHHHHHHHHHHhccCcE
Confidence            568999999999999999999999743  2    4788999854321       24556666665444

>d2nzca1 d.58.18.14 (A:2-81) Hypothetical protein TM1266 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: TM1266-like
domain: Hypothetical protein TM1266
species: Thermotoga maritima [TaxId: 2336]

Probab=88.44  E-value=1.1  Score=35.07  Aligned_cols=69  Identities=20%  Similarity=0.319  Sum_probs=61.6

Q ss_pred             EEEEEEEEeCchhHHHHHHHHHhccCceeeeeeee-ecCCCCeEEEEEEEeCChHHHHHHHHHHhcccceE
Q 011491          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVG-PAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLH  383 (484)
Q Consensus       314 ~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg-~te~~~iSRiTIVV~gde~~ieql~kQL~KLidVi  383 (484)
                      -+.++|.|+|+--.-.+|=.++++.|-.|-. -+| |....+++=|.++++|+.+.+..+...|.+|-.|.
T Consensus         4 i~vigIive~r~~~a~kVn~iL~~yg~~I~g-RmGip~~~~~v~iIsl~v~g~~d~I~~L~gkLg~i~gV~   73 (80)
T d2nzca1           4 FYILTIVVEDREKAYRQVNELLHNFSEDILL-RVGYPVREENMAIIFLVLKTDNDTIGALSGKLGQISGVR   73 (80)
T ss_dssp             EEEEEEEEESCHHHHHHHHHHHHHTGGGEEE-EEEEEEGGGTEEEEEEEEEECHHHHHHHHHHHHTSTTEE
T ss_pred             EEEEEEEEeChHHhHHHHHHHHHHCCCEEEE-eccCCccccCceEEEEEEECCHHHHHHHHHhhcCCCCEE
Confidence            3789999999999999999999999999986 566 66778999999999999999999999999998774

>d2qswa1 d.58.18.13 (A:256-345) Methionine import ATP-binding protein MetN2 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: NIL domain-like
domain: Methionine import ATP-binding protein MetN2
species: Enterococcus faecalis [TaxId: 1351]

Probab=87.81  E-value=0.72  Score=36.04  Aligned_cols=59  Identities=20%  Similarity=0.394  Sum_probs=46.3

Q ss_pred             eEEEeC--CCCCHHHHHHHHHhcCcEE-------EEecC---CEEEEEEeCChhHHHHHHHHhccCCc-EEE
Q 011491          163 LIKLNG--DTSTWPEIMWLVDIFRAKV-------VDISE---HALTIEVTGDPGKMVAVQRNLSKFGI-KEL  221 (484)
Q Consensus       163 LiKV~~--~~~~r~eI~~l~~~FrAkI-------VDvs~---~sl~iE~TG~~~KIdafi~~L~~fGI-lE~  221 (484)
                      ++|+..  +..+.+-|-++++.|+-.+       =++..   ..+++|++|+++++++.++.|+..|| .|.
T Consensus        15 lvrl~f~g~~a~~Pvis~l~r~~~i~vnIL~g~i~~i~~~~~G~L~l~l~G~~~~i~~al~~L~~~~v~vEv   86 (90)
T d2qswa1          15 IVRLLFHGEQAKLPIISHIVQEYQVEVSIIQGNIQQTKQGAVGSLYIQLLGEEQNILAAIEGLRKLRVETEV   86 (90)
T ss_dssp             EEEEEEESCSCSSCHHHHHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEE
T ss_pred             EEEEEEcCCccCccHHHHHHHHhCCcEEEEEEEeEEeCCccEEEEEEEEECCHHHHHHHHHHHHHCCCEEEE
Confidence            566654  3456778999999987544       34444   68999999999999999999999996 454

>d2qrra1 d.58.18.13 (A:2-98) Methionine import ATP-binding protein MetN {Vibrio parahaemolyticus [TaxId: 670]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: NIL domain-like
domain: Methionine import ATP-binding protein MetN
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=85.60  E-value=1.1  Score=35.22  Aligned_cols=60  Identities=15%  Similarity=0.150  Sum_probs=46.4

Q ss_pred             heeEEecCc--cchHHHHHHHHHcCcE-------EEEecC---CEEEEEEeCCHHHHHHHHHHhccCCc-EEE
Q 011491          399 ILIKIAVNT--AARRDVLDIAKIFRAR-------AVDVSD---HTITLELTGDLNKIIALQRLLEPYGI-CEV  458 (484)
Q Consensus       399 ~LIKV~~~~--~~r~eI~~la~ifrak-------IVDvs~---~si~iE~TG~~~Kidafi~lL~pyGI-lEv  458 (484)
                      .++|+....  ...+-|-++++.|+..       |=++..   .+++++++|+++++++.++.|+..|+ +|+
T Consensus        20 ~llrl~f~g~~a~~Pvis~l~~~~~i~vnIL~g~i~~i~~~~~G~Lil~l~G~~~~~~~Al~~L~~~~i~vEv   92 (97)
T d2qrra1          20 PLVRMEFTGATVDAPLMSQISRKYNIDVSILSSDLDYAGGVKFGMMVAELFGNEQDDSAAIEYLRENNVKVEV   92 (97)
T ss_dssp             EEEEEEECTTSCSSCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEE
T ss_pred             eEEEEEEeCCCcCchHHHHHHHHHCCCeEEEEEeeEEeCCeeEEEEEEEEECCHHHHHHHHHHHHHcCCeEEE
Confidence            488887654  4456788999988754       334443   67899999999999999999999996 454

>d2j0wa2 d.58.18.10 (A:295-385) Aspartokinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Escherichia coli [TaxId: 562]

Probab=85.05  E-value=0.18  Score=39.83  Aligned_cols=55  Identities=13%  Similarity=0.331  Sum_probs=38.8

Q ss_pred             EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChh--H-----HHHHHHHHhcCcc
Q 011491           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTER--V-----LRQVVEQLNKLVN  144 (484)
Q Consensus        86 VeN~pGVL~RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde~--~-----veQI~kQL~KLid  144 (484)
                      ..++||+++||.+.|++.|+||+-++-+    +.-++++++..+.  .     .+.+.+.|+|+-+
T Consensus        24 m~~~~G~~~~if~~L~~~~Inv~mis~S----e~~is~~v~~~~~~~av~~L~~~~~~~eL~~~~~   85 (91)
T d2j0wa2          24 MLHSRGFLAEVFGILARHNISVDLITTS----EVSVALTLDTTGSTSTGDTLLTQSLLMELSALCR   85 (91)
T ss_dssp             CSCHHHHHHHHTTTTTTTTCCCSEEEEE----TTEEEEEECCCCCSSTTCCSSCHHHHHHHHHHSC
T ss_pred             CCCCcCHHHHHHHHHHHcCCcEEEEEcc----CcEEEEEEchhHHHHHHHHHHHHHHHHHHhccCc
Confidence            4578999999999999999999999742    2358888874332  1     2445556665433

>d2joqa1 d.58.54.2 (A:4-89) Hypothetical protein HP0495 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: YbeD/HP0495-like
family: HP0495-like
domain: Hypothetical protein HP0495
species: Helicobacter pylori [TaxId: 210]

Probab=84.94  E-value=3.6  Score=31.50  Aligned_cols=71  Identities=4%  Similarity=0.042  Sum_probs=62.2

Q ss_pred             eEEEEEEEEeCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEe-CChHHHHHHHHHHhcccceEEE
Q 011491          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEV  385 (484)
Q Consensus       313 ~~htLsilVeN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gde~~ieql~kQL~KLidVi~V  385 (484)
                      ..|.+.+...+.++.+..+..+|..|.+.++.  .-++....+..+|+.+. .+++++..|-+.|.+.-.|+-|
T Consensus        14 c~y~~KvIg~~~~~~~~~~~~~~~~~~~~~~~--~k~Ss~GkY~Svtv~v~v~s~~ql~~iY~~L~~~~~Vimv   85 (86)
T d2joqa1          14 CLWDYRVIMTTKDTSTLKELLETYQRPFKLEF--KNTSKNAKFYSFNVSMEVSNESERNEIFQKISQLDKVVQT   85 (86)
T ss_dssp             EEEEEEEEESCSCCCHHHHHHHTTTCCEEEEE--EEECTTSCCEEEEEEEEESSHHHHHHHHHHHTTSSSEEEE
T ss_pred             cccEEEEEEecCcccceeeEEEEeccCCCCCc--cccCCCCcEEEEEEEEEECCHHHHHHHHHHHhcCCCEEEe
Confidence            57999999999999999999999999988764  25677888999999887 6788999999999999998865

>d2qswa1 d.58.18.13 (A:256-345) Methionine import ATP-binding protein MetN2 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: NIL domain-like
domain: Methionine import ATP-binding protein MetN2
species: Enterococcus faecalis [TaxId: 1351]

Probab=84.55  E-value=0.27  Score=38.58  Aligned_cols=60  Identities=15%  Similarity=0.267  Sum_probs=46.1

Q ss_pred             eeEEecC--ccchHHHHHHHHHcC-------cEEEEecC---CEEEEEEeCCHHHHHHHHHHhccCCc-EEEe
Q 011491          400 LIKIAVN--TAARRDVLDIAKIFR-------ARAVDVSD---HTITLELTGDLNKIIALQRLLEPYGI-CEVA  459 (484)
Q Consensus       400 LIKV~~~--~~~r~eI~~la~ifr-------akIVDvs~---~si~iE~TG~~~Kidafi~lL~pyGI-lEva  459 (484)
                      ++|+...  ....+-|-++++.|+       |+|=++..   ..+++|++|+++++++.++.|+..|+ +|+.
T Consensus        15 lvrl~f~g~~a~~Pvis~l~r~~~i~vnIL~g~i~~i~~~~~G~L~l~l~G~~~~i~~al~~L~~~~v~vEvi   87 (90)
T d2qswa1          15 IVRLLFHGEQAKLPIISHIVQEYQVEVSIIQGNIQQTKQGAVGSLYIQLLGEEQNILAAIEGLRKLRVETEVI   87 (90)
T ss_dssp             EEEEEEESCSCSSCHHHHHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEES
T ss_pred             EEEEEEcCCccCccHHHHHHHHhCCcEEEEEEEeEEeCCccEEEEEEEEECCHHHHHHHHHHHHHCCCEEEEe
Confidence            6666643  344567888888776       45555655   68999999999999999999999997 6654

>d2qrra1 d.58.18.13 (A:2-98) Methionine import ATP-binding protein MetN {Vibrio parahaemolyticus [TaxId: 670]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: NIL domain-like
domain: Methionine import ATP-binding protein MetN
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=84.26  E-value=1.4  Score=34.60  Aligned_cols=57  Identities=14%  Similarity=0.169  Sum_probs=46.1

Q ss_pred             eeEEEeCCC--CCHHHHHHHHHhcCcEE------EE-ecC---CEEEEEEeCChhHHHHHHHHhccCCc
Q 011491          162 MLIKLNGDT--STWPEIMWLVDIFRAKV------VD-ISE---HALTIEVTGDPGKMVAVQRNLSKFGI  218 (484)
Q Consensus       162 aLiKV~~~~--~~r~eI~~l~~~FrAkI------VD-vs~---~sl~iE~TG~~~KIdafi~~L~~fGI  218 (484)
                      .++|+....  .+.+-|-++++.|+..+      || +..   .+++++++|+++++++.++.|+..||
T Consensus        20 ~llrl~f~g~~a~~Pvis~l~~~~~i~vnIL~g~i~~i~~~~~G~Lil~l~G~~~~~~~Al~~L~~~~i   88 (97)
T d2qrra1          20 PLVRMEFTGATVDAPLMSQISRKYNIDVSILSSDLDYAGGVKFGMMVAELFGNEQDDSAAIEYLRENNV   88 (97)
T ss_dssp             EEEEEEECTTSCSSCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             eEEEEEEeCCCcCchHHHHHHHHHCCCeEEEEEeeEEeCCeeEEEEEEEEECCHHHHHHHHHHHHHcCC
Confidence            588887654  56667999999998765      33 232   66999999999999999999999995

>d3ceda1 d.58.18.13 (A:247-341) Methionine import ATP-binding protein MetN2 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: NIL domain-like
domain: Methionine import ATP-binding protein MetN2
species: Staphylococcus aureus [TaxId: 1280]

Probab=84.00  E-value=1.1  Score=35.33  Aligned_cols=64  Identities=16%  Similarity=0.217  Sum_probs=49.2

Q ss_pred             eeEEEeCC--CCCHHHHHHHHHhcCc-------EEEEecC---CEEEEEEeC-ChhHHHHHHHHhccCCc-EEEeecc
Q 011491          162 MLIKLNGD--TSTWPEIMWLVDIFRA-------KVVDISE---HALTIEVTG-DPGKMVAVQRNLSKFGI-KELARTG  225 (484)
Q Consensus       162 aLiKV~~~--~~~r~eI~~l~~~FrA-------kIVDvs~---~sl~iE~TG-~~~KIdafi~~L~~fGI-lE~aRTG  225 (484)
                      .++|+...  ..+.+-|-++++.|+-       +|=.+..   ..++++++| +++++++.++.|+..|+ +|+.+-|
T Consensus        18 ~lvrL~F~G~~a~~Pvis~l~r~~~v~vnIL~g~I~~i~~~~~G~Liv~l~G~~~~~i~~ai~~L~~~~v~vEVi~~g   95 (95)
T d3ceda1          18 YIVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQVKMEVLRHG   95 (95)
T ss_dssp             EEEEEEEEEESCHHHHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred             eEEEEEEeCCccCchHHHHHHHHhCCceEEEEEEeEEeCCeeEEEEEEEEecCCHHHHHHHHHHHHHcCCEEEEecCC
Confidence            36777654  4567789999998863       4444554   679999999 78899999999999995 5887765

>d2nzca1 d.58.18.14 (A:2-81) Hypothetical protein TM1266 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: TM1266-like
domain: Hypothetical protein TM1266
species: Thermotoga maritima [TaxId: 2336]

Probab=83.14  E-value=2.6  Score=32.86  Aligned_cols=66  Identities=14%  Similarity=0.217  Sum_probs=55.1

Q ss_pred             EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeee-ecCCC--cEEEEEEeCChhHHHHHHHHHhcCcce
Q 011491           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVG-LNVDK--ALFTIVVSGTERVLRQVVEQLNKLVNV  145 (484)
Q Consensus        79 khtISilVeN~pGVL~RIagLFsRRGyNIeSLtVg-~Ted~--~~iTIVV~gde~~veQI~kQL~KLidV  145 (484)
                      -++++|.++|+--.-.+|=.++++-|-.|-. -+| |-.+.  ++|.++++|+.+.+..+..+|.+|--|
T Consensus         4 i~vigIive~r~~~a~kVn~iL~~yg~~I~g-RmGip~~~~~v~iIsl~v~g~~d~I~~L~gkLg~i~gV   72 (80)
T d2nzca1           4 FYILTIVVEDREKAYRQVNELLHNFSEDILL-RVGYPVREENMAIIFLVLKTDNDTIGALSGKLGQISGV   72 (80)
T ss_dssp             EEEEEEEEESCHHHHHHHHHHHHHTGGGEEE-EEEEEEGGGTEEEEEEEEEECHHHHHHHHHHHHTSTTE
T ss_pred             EEEEEEEEeChHHhHHHHHHHHHHCCCEEEE-eccCCccccCceEEEEEEECCHHHHHHHHHhhcCCCCE
Confidence            4689999999999999999999999999874 334 43333  469999999999999999999998765

>d1gtda_ d.284.1.1 (A:) PurS subunit of FGAM synthetase {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: PurS-like
superfamily: PurS-like
family: PurS subunit of FGAM synthetase
domain: PurS subunit of FGAM synthetase
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=82.84  E-value=1  Score=35.17  Aligned_cols=46  Identities=20%  Similarity=0.343  Sum_probs=37.1

Q ss_pred             EEEEEEEEcCchhHHH----HHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh
Q 011491           79 RHTISVFVGDESGIIN----RIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE  129 (484)
Q Consensus        79 khtISilVeN~pGVL~----RIagLFsRRGyNIeSLtVg~Ted~~~iTIVV~gde  129 (484)
                      +|.+.|.|..+||||.    -|..-+.+.||+++++.+|.     ++.+.+++++
T Consensus         1 kf~v~V~V~lK~gVlDPqG~ai~~aL~~lG~~v~~Vr~gK-----~~~l~i~~~~   50 (82)
T d1gtda_           1 KFMVEVRIRLKKGMLNPEAATIERALALLGYEVEDTDTTD-----VITFTMDEDS   50 (82)
T ss_dssp             CEEEEEEEEECTTSCCHHHHHHHHHHHHHTCCCEEEEEEE-----EEEEEECCSC
T ss_pred             CeEEEEEEEECCCCcCcHHHHHHHHHHHcCCCcceEEEEE-----EEEEEEcCCC
Confidence            5788999999999985    56777888999999998875     4777777543

>d1gtda_ d.284.1.1 (A:) PurS subunit of FGAM synthetase {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: PurS-like
superfamily: PurS-like
family: PurS subunit of FGAM synthetase
domain: PurS subunit of FGAM synthetase
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=82.45  E-value=1.2  Score=34.79  Aligned_cols=56  Identities=18%  Similarity=0.326  Sum_probs=41.9

Q ss_pred             EEEEEEEEeCchhHHH----HHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCCh-HH----HHHHHHHH
Q 011491          314 SHTLSMLVNNTPGVLN----IVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD-ES----IGKLVQLL  376 (484)
Q Consensus       314 ~htLsilVeN~pGVL~----RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde-~~----ieql~kQL  376 (484)
                      +|.+.|.|..+||||+    -|..-+.+.||+++++.+|.       ++.+.+++++ +.    ++++.++|
T Consensus         1 kf~v~V~V~lK~gVlDPqG~ai~~aL~~lG~~v~~Vr~gK-------~~~l~i~~~~~e~a~~~v~~~c~~l   65 (82)
T d1gtda_           1 KFMVEVRIRLKKGMLNPEAATIERALALLGYEVEDTDTTD-------VITFTMDEDSLEAVEREVEDMCQRL   65 (82)
T ss_dssp             CEEEEEEEEECTTSCCHHHHHHHHHHHHHTCCCEEEEEEE-------EEEEEECCSCHHHHHHHHHHHHHHT
T ss_pred             CeEEEEEEEECCCCcCcHHHHHHHHHHHcCCCcceEEEEE-------EEEEEEcCCCHHHHHHHHHHHHHHH
Confidence            4789999999999985    46677888999999999885       4777777543 32    45555544

>d2j0wa3 d.58.18.10 (A:386-449) Aspartokinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Escherichia coli [TaxId: 562]

Probab=82.39  E-value=0.56  Score=34.64  Aligned_cols=49  Identities=31%  Similarity=0.505  Sum_probs=37.6

Q ss_pred             eCchhHHHHHHHHHhccCceeeeeeeeecCCCCeEEEEEEEeCChHHHHHHHHHHhc
Q 011491          322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK  378 (484)
Q Consensus       322 eN~pGVL~RVtglFsRRGyNIeSLtVg~te~~~iSRiTIVV~gde~~ieql~kQL~K  378 (484)
                      .++||+..|+...++.  +||.-+..+.+|.    +|+++|+.+  ..++.++.|++
T Consensus        12 ~~~~gi~arif~~L~~--~nI~~i~~~~Se~----~is~vV~~~--d~~~Av~aLh~   60 (64)
T d2j0wa3          12 SKACGVGKEVFGVLEP--FNIRMICYGASSH----NLCFLVPGE--DAEQVVQKLHS   60 (64)
T ss_dssp             TTSSSHHHHHHSSCTT--SCCCEEEESSCTT----EEEEEEEGG--GHHHHHHHHHH
T ss_pred             ccCccHHHHHHHHHhh--CCCeEEEEEcCcc----EEEEEEcHH--HHHHHHHHHHH
Confidence            4899999999999974  6777677776654    689999844  56777777764