Citrus Sinensis ID: 011500

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480----
MGLCLRNCLCIVLIATAAVGGVSSNHGVFSVKYRYAGRERSLSLLKEHDARRQQRILAGVDLPLGGSSRPDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGINGGGIFAIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKVYPHEYLFPFEDLWCIGWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEYNCSSSIKVRDERTGTVHLVGSHYLTSDCSLNTQWCIILLLLSLLLHLLIHQS
cccccHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEEEcccccEEEEEEEccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccEEEEEEEEEEEEEEccccccccccccccEEEEccccccccccccccccccEEEEccccccHHHHHHcccccccccEEEEccccccccEEEEccccccccEEEccccccccccEEEEEEEEccEEEccccccccccccccEEEEcccccccccHHHHHHHHHHHHHHccccccccccccccEEEcccccccccccEEEEEccccEEEEcccEEEEEcccEEEEEEEEccccccccccEEEEcccEEEEEEEEEEccccEEEEEcccccccccccccccccEEEcccccccccccccHHHHHHHHHHHHHHHHHHccc
cHHHHHHHHHHHHHHHHHHHHHccHHHcHHHHHHHHHcccHHHHHHHccHHHHHHccccccccccccccccccEEEEEEEEEccccEEEEEEEEcccccEEEEEcccccccccccccccccccccccccccEEEccccHHHHHHccccccccccccccEEEEEEcccccccEEEEEEEEEEccEEcccccccccccEEEEEEEccccccEHEccccccEEEccccccccHHHHHHHccccccEEEEEEccccccEEEEEEcEEcccEEEEEccccccEEEEEEEEEEEccEEEEcccccEEcccccEEEEEccccEEcccHHHHHHHHHHHcccccccccEEEccccEEEEEEccccccccEEEEEEEccEEccccHHHHEEEccccEEEEcccccccccccccEEEEEEEEEccEEEEEEccccEEEEEEcccccEEEEEEcccccEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHcc
MGLCLRNCLCIVLIATAAvggvssnhgvfsvkyryagreRSLSLLKEHDARRQQRILAgvdlplggssrpdgvglyyakigigtppkdyyvqvdtgsdimwvnciqckecprrsslgieltlydikdsstgkfvtcdqefchgvyggpltdctantscpyleiygdgssttgyfVQDVVQYdkvsgdlqttstngslifgcgarqsgnldstneeALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLdgingggifaighvvqpevnktplvpnqphysinMTAVQVGLdflnlptdvfgvgdnkgtiidsgttlaylpemvYEPLVSKIisqqpdlkvhtvhdeytcfqysesvdegfpnvtfhfensvslkvypheylfpfedlwcigwqnsgmqsrdrkNMTLLGDLVLSNKLVLYDLENQVigwteyncsssikvrdertgtvhlvgshyltsdcslnTQWCIILLLLSLLLHLLIHQS
MGLCLRNCLCIVLIATaavggvssnhgvFSVKYRYAGRERSLSLLKEHDARRQQRIlagvdlplggssrPDGVGLYYAkigigtppKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGINGGGIFAIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKVYPHEYLFPFEDLWCIGWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEYNCSSSIKVRDERTGTVHLVGSHYLTSDCSLNTQWCIILLLLSLLLHLLIHQS
MGLCLRNCLCIVLIATAAVGGVSSNHGVFSVKYRYAGRERSLSLLKEHDARRQQRILAGVDLPLGGSSRPDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGINGGGIFAIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKVYPHEYLFPFEDLWCIGWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEYNCSSSIKVRDERTGTVHLVGSHYLTSDCSLNTQWCiillllslllhllihQS
**LCLRNCLCIVLIATAAVGGVSSNHGVFSVKYRYAGRERSLSLLK*******QRILAGVDLPLGGSSRPDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGAR************LDGIIGFG***********SSGGVRKMFAHCLDGINGGGIFAIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKVYPHEYLFPFEDLWCIGWQNSGMQ**DRKNMTLLGDLVLSNKLVLYDLENQVIGWTEYNCSSSIKVRDERTGTVHLVGSHYLTSDCSLNTQWCIILLLLSLLLHLLI***
***CLRNCLCIVLIATAAVGG************************************************PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYG*********TSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGINGGGIFAIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPD****TVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKVYPHEYLFPFEDLWCIGWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEYN******************************TQWCIILLLLSLLLHLLIHQS
MGLCLRNCLCIVLIATAAVGGVSSNHGVFSVKYRYAGRERSLSLLKEHDARRQQRILAGVDLPLGGSSRPDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGINGGGIFAIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKVYPHEYLFPFEDLWCIGWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEYNCSSSIKVRDERTGTVHLVGSHYLTSDCSLNTQWCIILLLLSLLLHLLIHQS
MGLCLRNCLCIVLIATAAVGGVSSNHGVFSVKYRYAGRERSLSLLKEHDARRQQRILAGVDLPLGGSSRPDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGINGGGIFAIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKVYPHEYLFPFEDLWCIGWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEYNCSSSIKVRDERTGTVHLVGSHYLTSDCSLNTQWCIILLLLSLLLHLLIHQS
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooo
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiii
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGLCLRNCLCIVLIATAAVGGVSSNHGVFSVKYRYAGRERSLSLLKEHDARRQQRILAGVDLPLGGSSRPDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGINGGGIFAIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKVYPHEYLFPFEDLWCIGWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEYNCSSSIKVRDERTGTVHLVGSHYLTSDCSLNTQWCIILLLLSLLLHLLIHQS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query484 2.2.26 [Sep-21-2011]
Q9S9K4475 Aspartic proteinase-like no no 0.960 0.978 0.466 1e-127
Q766C2438 Aspartic proteinase nepen N/A no 0.758 0.837 0.269 6e-29
Q766C3437 Aspartic proteinase nepen N/A no 0.741 0.821 0.266 2e-25
Q3EBM5447 Probable aspartic proteas no no 0.741 0.803 0.278 4e-25
Q9LX20528 Aspartic proteinase-like no no 0.752 0.689 0.273 5e-25
Q9LS40500 Protein ASPARTIC PROTEASE no no 0.764 0.74 0.261 1e-22
Q0IU52410 Aspartic proteinase Asp1 no no 0.729 0.860 0.250 2e-21
Q9LHE3470 Protein ASPARTIC PROTEASE no no 0.688 0.708 0.267 3e-21
A2ZC67410 Aspartic proteinase Asp1 N/A no 0.721 0.851 0.238 1e-19
Q6XBF8437 Aspartic proteinase CDR1 no no 0.692 0.766 0.261 1e-15
>sp|Q9S9K4|ASPL2_ARATH Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2 Back     alignment and function desciption
 Score =  454 bits (1168), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 223/478 (46%), Positives = 330/478 (69%), Gaps = 13/478 (2%)

Query: 5   LRNCLCIVLIATAAVGGVSSNHGVFSVKYRYAGRERSLSLLKEHDARRQQRILAGVDLPL 64
           LR  LCIV+     V   +S + VF  ++++AG++++L   K HD RR  R+LA +DLPL
Sbjct: 3   LRRKLCIVVAVFVIVIEFASANFVFKAQHKFAGKKKNLEHFKSHDTRRHSRMLASIDLPL 62

Query: 65  GGSSRPDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYD 124
           GG SR D VGLY+ KI +G+PPK+Y+VQVDTGSDI+W+NC  C +CP +++L   L+L+D
Sbjct: 63  GGDSRVDSVGLYFTKIKLGSPPKEYHVQVDTGSDILWINCKPCPKCPTKTNLNFRLSLFD 122

Query: 125 IKDSSTGKFVTCDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKV 184
           +  SST K V CD +FC  +       C     C Y  +Y D S++ G F++D++  ++V
Sbjct: 123 MNASSTSKKVGCDDDFCSFISQS--DSCQPALGCSYHIVYADESTSDGKFIRDMLTLEQV 180

Query: 185 SGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMF 244
           +GDL+T      ++FGCG+ QSG L    + A+DG++GFG+SN+S++SQLA++G  +++F
Sbjct: 181 TGDLKTGPLGQEVVFGCGSDQSGQL-GNGDSAVDGVMGFGQSNTSVLSQLAATGDAKRVF 239

Query: 245 AHCLDGINGGGIFAIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGD 304
           +HCLD + GGGIFA+G V  P+V  TP+VPNQ HY++ +  + V    L+LP  +     
Sbjct: 240 SHCLDNVKGGGIFAVGVVDSPKVKTTPMVPNQMHYNVMLMGMDVDGTSLDLPRSIV---R 296

Query: 305 NKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVT 364
           N GTI+DSGTTLAY P+++Y+ L+  I+++QP +K+H V + + CF +S +VDE FP V+
Sbjct: 297 NGGTIVDSGTTLAYFPKVLYDSLIETILARQP-VKLHIVEETFQCFSFSTNVDEAFPPVS 355

Query: 365 FHFENSVSLKVYPHEYLFPF-EDLWCIGWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLE 423
           F FE+SV L VYPH+YLF   E+L+C GWQ  G+ + +R  + LLGDLVLSNKLV+YDL+
Sbjct: 356 FEFEDSVKLTVYPHDYLFTLEEELYCFGWQAGGLTTDERSEVILLGDLVLSNKLVVYDLD 415

Query: 424 NQVIGWTEYNCSSSIKVRDERTGTVHLVGSHYLTSDCSLNTQWCIILLLLSLLLHLLI 481
           N+VIGW ++NCSSSIK++D  +G V+ VG+  L+S   L     +I  LL++L  L++
Sbjct: 416 NEVIGWADHNCSSSIKIKD-GSGGVYSVGADNLSSAPRL----LMITKLLTILSPLIV 468

Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: -
>sp|Q766C2|NEP2_NEPGR Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1 Back     alignment and function description
>sp|Q766C3|NEP1_NEPGR Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1 Back     alignment and function description
>sp|Q3EBM5|ASPR1_ARATH Probable aspartic protease At2g35615 OS=Arabidopsis thaliana GN=At2g35615 PE=3 SV=1 Back     alignment and function description
>sp|Q9LX20|ASPL1_ARATH Aspartic proteinase-like protein 1 OS=Arabidopsis thaliana GN=At5g10080 PE=1 SV=1 Back     alignment and function description
>sp|Q9LS40|ASPG1_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1 Back     alignment and function description
>sp|Q0IU52|ASP1_ORYSJ Aspartic proteinase Asp1 OS=Oryza sativa subsp. japonica GN=ASP1 PE=2 SV=1 Back     alignment and function description
>sp|Q9LHE3|ASPG2_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 2 OS=Arabidopsis thaliana GN=ASPG2 PE=2 SV=1 Back     alignment and function description
>sp|A2ZC67|ASP1_ORYSI Aspartic proteinase Asp1 OS=Oryza sativa subsp. indica GN=ASP1 PE=2 SV=2 Back     alignment and function description
>sp|Q6XBF8|CDR1_ARATH Aspartic proteinase CDR1 OS=Arabidopsis thaliana GN=CDR1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query484
255549236492 Aspartic proteinase nepenthesin-1 precur 0.954 0.939 0.824 0.0
224128838485 predicted protein [Populus trichocarpa] 0.923 0.921 0.812 0.0
449446233498 PREDICTED: aspartic proteinase-like prot 0.956 0.929 0.755 0.0
356568907490 PREDICTED: aspartic proteinase-like prot 0.927 0.916 0.784 0.0
356523724488 PREDICTED: aspartic proteinase-like prot 0.921 0.913 0.779 0.0
359478045502 PREDICTED: aspartic proteinase-like prot 0.921 0.888 0.770 0.0
297848856484 aspartyl protease family protein [Arabid 0.915 0.915 0.776 0.0
18390579485 aspartyl protease-like protein [Arabidop 0.948 0.946 0.748 0.0
357502759481 Aspartic proteinase-like protein [Medica 0.915 0.920 0.755 0.0
296089645477 unnamed protein product [Vitis vinifera] 0.849 0.861 0.774 0.0
>gi|255549236|ref|XP_002515672.1| Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis] gi|223545215|gb|EEF46724.1| Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  799 bits (2063), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/462 (82%), Positives = 419/462 (90%)

Query: 21  GVSSNHGVFSVKYRYAGRERSLSLLKEHDARRQQRILAGVDLPLGGSSRPDGVGLYYAKI 80
            VSS+ GVFSVKYRYAG++RSLS LK HD RRQ RILAGVDLPLGGS RPD VGLYYAK+
Sbjct: 31  AVSSDSGVFSVKYRYAGQQRSLSDLKAHDDRRQLRILAGVDLPLGGSGRPDTVGLYYAKV 90

Query: 81  GIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEF 140
           GIGTP KDYYVQVDTGSDIMWVNCIQC+ECPR SSLG+ELTLY+IKDS +GK V CD+EF
Sbjct: 91  GIGTPSKDYYVQVDTGSDIMWVNCIQCRECPRTSSLGMELTLYNIKDSVSGKLVPCDEEF 150

Query: 141 CHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFG 200
           C+ V GGPL+ CTAN SCPYLEIYGDGSST GYFV+DVVQYD+VSGDLQTTS+NGS+IFG
Sbjct: 151 CYEVNGGPLSGCTANMSCPYLEIYGDGSSTAGYFVKDVVQYDRVSGDLQTTSSNGSVIFG 210

Query: 201 CGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGINGGGIFAIG 260
           CGARQSG+L  T+EEALDGI+GFGKSNSSMISQLA++  V+K+FAHCLDGINGGGIFAIG
Sbjct: 211 CGARQSGDLGPTSEEALDGILGFGKSNSSMISQLAATRKVKKIFAHCLDGINGGGIFAIG 270

Query: 261 HVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLP 320
           HVVQP+VN TPL+PNQPHY++NMTAVQVG DFL+LPT+ F  GD KG IIDSGTTLAYLP
Sbjct: 271 HVVQPKVNMTPLIPNQPHYNVNMTAVQVGEDFLHLPTEEFEAGDRKGAIIDSGTTLAYLP 330

Query: 321 EMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKVYPHEY 380
           E+VYEPLVSKIISQQPDLKVH V DEYTCFQYS SVD+GFPNVTFHFENSV LKV+PHEY
Sbjct: 331 EIVYEPLVSKIISQQPDLKVHIVRDEYTCFQYSGSVDDGFPNVTFHFENSVFLKVHPHEY 390

Query: 381 LFPFEDLWCIGWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEYNCSSSIKV 440
           LFPFE LWCIGWQNSGMQSRDR+NMTLLGDLVLSNKLVLYDLENQ IGWTEYNCSSSIKV
Sbjct: 391 LFPFEGLWCIGWQNSGMQSRDRRNMTLLGDLVLSNKLVLYDLENQAIGWTEYNCSSSIKV 450

Query: 441 RDERTGTVHLVGSHYLTSDCSLNTQWCIILLLLSLLLHLLIH 482
           +DERTGTVHLVGSH + S+ SLN QW II L LS+LLH L++
Sbjct: 451 QDERTGTVHLVGSHSIYSNASLNVQWGIIFLFLSMLLHALVY 492

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224128838|ref|XP_002320434.1| predicted protein [Populus trichocarpa] gi|222861207|gb|EEE98749.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449446233|ref|XP_004140876.1| PREDICTED: aspartic proteinase-like protein 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356568907|ref|XP_003552649.1| PREDICTED: aspartic proteinase-like protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|356523724|ref|XP_003530485.1| PREDICTED: aspartic proteinase-like protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|359478045|ref|XP_002267046.2| PREDICTED: aspartic proteinase-like protein 2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297848856|ref|XP_002892309.1| aspartyl protease family protein [Arabidopsis lyrata subsp. lyrata] gi|297338151|gb|EFH68568.1| aspartyl protease family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18390579|ref|NP_563751.1| aspartyl protease-like protein [Arabidopsis thaliana] gi|332189782|gb|AEE27903.1| aspartyl protease-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357502759|ref|XP_003621668.1| Aspartic proteinase-like protein [Medicago truncatula] gi|355496683|gb|AES77886.1| Aspartic proteinase-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|296089645|emb|CBI39464.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query484
TAIR|locus:2198753485 AT1G05840 [Arabidopsis thalian 0.942 0.940 0.754 8.3e-193
TAIR|locus:2075512488 AT3G02740 [Arabidopsis thalian 0.909 0.901 0.536 1.8e-135
TAIR|locus:2183617482 AT5G36260 [Arabidopsis thalian 0.921 0.925 0.5 1.3e-123
TAIR|locus:2200365475 AT1G65240 [Arabidopsis thalian 0.921 0.938 0.476 6.7e-120
TAIR|locus:2172661493 AT5G22850 [Arabidopsis thalian 0.822 0.807 0.412 5e-83
TAIR|locus:2200023492 AT1G08210 [Arabidopsis thalian 0.828 0.815 0.387 6e-80
TAIR|locus:2040545512 AT2G36670 [Arabidopsis thalian 0.809 0.765 0.385 1.6e-79
TAIR|locus:2083098 632 AT3G50050 [Arabidopsis thalian 0.685 0.525 0.299 3.9e-35
TAIR|locus:2206184445 AT1G31450 [Arabidopsis thalian 0.743 0.808 0.312 8.3e-35
TAIR|locus:2010786431 AT1G64830 [Arabidopsis thalian 0.690 0.774 0.296 7.4e-34
TAIR|locus:2198753 AT1G05840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1868 (662.6 bits), Expect = 8.3e-193, P = 8.3e-193
 Identities = 345/457 (75%), Positives = 393/457 (85%)

Query:    11 IVLIATAAVGGVSSNHGVFSVKYRYAGRERSLSLLKEHDARRQQRILAGVDLPLGGSSRP 70
             ++   TA V  VS N GVF+VKYRY   + SL+ LKEHD RRQ  ILAG+DLPLGG+ RP
Sbjct:    16 LIWFLTALVS-VSCNPGVFNVKYRYPRLQGSLTALKEHDDRRQLTILAGIDLPLGGTGRP 74

Query:    71 DGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSST 130
             D  GLYYAKIGIGTP K YYVQVDTGSDIMWVNCIQCK+CPRRS+LGIELTLY+I +S +
Sbjct:    75 DIPGLYYAKIGIGTPAKSYYVQVDTGSDIMWVNCIQCKQCPRRSTLGIELTLYNIDESDS 134

Query:   131 GKFVTCDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQT 190
             GK V+CD +FC+ + GGPL+ C AN SCPYLEIYGDGSST GYFV+DVVQYD V+GDL+T
Sbjct:   135 GKLVSCDDDFCYQISGGPLSGCKANMSCPYLEIYGDGSSTAGYFVKDVVQYDSVAGDLKT 194

Query:   191 TSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDG 250
              + NGS+IFGCGARQSG+LDS+NEEALDGI+GFGK+NSSMISQLASSG V+K+FAHCLDG
Sbjct:   195 QTANGSVIFGCGARQSGDLDSSNEEALDGILGFGKANSSMISQLASSGRVKKIFAHCLDG 254

Query:   251 INGGGIFAIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTII 310
              NGGGIFAIG VVQP+VN TPLVPNQPHY++NMTAVQVG +FL +P D+F  GD KG II
Sbjct:   255 RNGGGIFAIGRVVQPKVNMTPLVPNQPHYNVNMTAVQVGQEFLTIPADLFQPGDRKGAII 314

Query:   311 DSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENS 370
             DSGTTLAYLPE++YEPLV KI SQ+P LKVH V  +Y CFQYS  VDEGFPNVTFHFENS
Sbjct:   315 DSGTTLAYLPEIIYEPLVKKITSQEPALKVHIVDKDYKCFQYSGRVDEGFPNVTFHFENS 374

Query:   371 VSLKVYPHEYLFPFEDLWCIGWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWT 430
             V L+VYPH+YLFP E +WCIGWQNS MQSRDR+NMTLLGDLVLSNKLVLYDLENQ+IGWT
Sbjct:   375 VFLRVYPHDYLFPHEGMWCIGWQNSAMQSRDRRNMTLLGDLVLSNKLVLYDLENQLIGWT 434

Query:   431 EYNCSSSIKVRDERTGTVHLVGSHYLTSDCSLNTQWC 467
             EYNCSSSIKV+DE TGTVHLVGSH+++S   L+T  C
Sbjct:   435 EYNCSSSIKVKDEGTGTVHLVGSHFISSALPLDTSMC 471
GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA
GO:0005886 "plasma membrane" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0031225 "anchored to membrane" evidence=TAS
GO:0000303 "response to superoxide" evidence=RCA
GO:0006301 "postreplication repair" evidence=RCA
GO:0006499 "N-terminal protein myristoylation" evidence=RCA
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA
GO:0006635 "fatty acid beta-oxidation" evidence=RCA
GO:0006869 "lipid transport" evidence=RCA
GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA
GO:0007165 "signal transduction" evidence=RCA
GO:0008219 "cell death" evidence=RCA
GO:0009755 "hormone-mediated signaling pathway" evidence=RCA
GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA
GO:0009873 "ethylene mediated signaling pathway" evidence=RCA
GO:0010351 "lithium ion transport" evidence=RCA
GO:0016558 "protein import into peroxisome matrix" evidence=RCA
GO:0044265 "cellular macromolecule catabolic process" evidence=RCA
GO:0048573 "photoperiodism, flowering" evidence=RCA
TAIR|locus:2075512 AT3G02740 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183617 AT5G36260 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200365 AT1G65240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172661 AT5G22850 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200023 AT1G08210 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040545 AT2G36670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083098 AT3G50050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2206184 AT1G31450 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010786 AT1G64830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.230.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00140934
hypothetical protein (485 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query484
cd05476265 cd05476, pepsin_A_like_plant, Chroloplast Nucleoid 2e-54
cd05471283 cd05471, pepsin_like, Pepsin-like aspartic proteas 7e-44
PLN03146431 PLN03146, PLN03146, aspartyl protease family prote 4e-40
cd05472299 cd05472, cnd41_like, Chloroplast Nucleoids DNA-bin 1e-37
cd06096326 cd06096, Plasmepsin_5, Plasmepsins are a class of 6e-34
cd05475273 cd05475, nucellin_like, Nucellins, plant aspartic 6e-31
pfam00026316 pfam00026, Asp, Eukaryotic aspartyl protease 2e-17
cd06097278 cd06097, Aspergillopepsin_like, Aspergillopepsin_l 5e-14
cd05477318 cd05477, gastricsin, Gastricsins, asparate proteas 7e-12
cd05489362 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibit 7e-11
cd05474295 cd05474, SAP_like, SAPs, pepsin-like proteinases s 3e-10
cd05488320 cd05488, Proteinase_A_fungi, Fungal Proteinase A , 4e-10
cd05470109 cd05470, pepsin_retropepsin_like, Cellular and ret 6e-09
cd05473364 cd05473, beta_secretase_like, Beta-secretase, aspa 1e-07
cd05490325 cd05490, Cathepsin_D2, Cathepsin_D2, pepsin family 1e-07
cd05487326 cd05487, renin_like, Renin stimulates production o 1e-06
cd05478317 cd05478, pepsin_A, Pepsin A, aspartic protease pro 9e-06
PTZ00165482 PTZ00165, PTZ00165, aspartyl protease; Provisional 6e-05
cd05474295 cd05474, SAP_like, SAPs, pepsin-like proteinases s 2e-04
cd06098317 cd06098, phytepsin, Phytepsin, a plant homolog of 2e-04
cd05485329 cd05485, Cathepsin_D_like, Cathepsin_D_like, pepsi 6e-04
cd05486316 cd05486, Cathespin_E, Cathepsin E, non-lysosomal a 0.002
>gnl|CDD|133143 cd05476, pepsin_A_like_plant, Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information 
 Score =  182 bits (465), Expect = 2e-54
 Identities = 95/371 (25%), Positives = 138/371 (37%), Gaps = 119/371 (32%)

Query: 76  YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVT 135
           Y   + IGTPP+ + + VDTGSD+ W  C                               
Sbjct: 2   YLVTLSIGTPPQPFSLIVDTGSDLTWTQC------------------------------- 30

Query: 136 CDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNG 195
                                 C Y   YGDGSST+G    +            +     
Sbjct: 31  ----------------------CSYEYSYGDGSSTSGVLATETF---TFGDSSVSV---P 62

Query: 196 SLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGI---N 252
           ++ FGCG    G          DGI+G G+   S++SQL S+G     F++CL       
Sbjct: 63  NVAFGCGTDNEGGSFGGA----DGILGLGRGPLSLVSQLGSTGNK---FSYCLVPHDDTG 115

Query: 253 GGGIFAIG---HVVQPEVNKTPLVPN---QPHYSINMTAVQVGLDFLNLPTDVFGVGD-- 304
           G     +G    +    V  TPLV N     +Y +N+  + VG   L +P  VF +    
Sbjct: 116 GSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDG 175

Query: 305 NKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVT 364
           + GTIIDSGTTL YLP                                    D  +P++T
Sbjct: 176 SGGTIIDSGTTLTYLP------------------------------------DPAYPDLT 199

Query: 365 FHFENSVSLKVYPHEYLF-PFEDLWCIGWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLE 423
            HF+    L++ P  Y     E + C+   +S         +++LG++   N LV YDLE
Sbjct: 200 LHFDGGADLELPPENYFVDVGEGVVCLAILSSSSG-----GVSILGNIQQQNFLVEYDLE 254

Query: 424 NQVIGWTEYNC 434
           N  +G+   +C
Sbjct: 255 NSRLGFAPADC 265

This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which have at least six residues in length with hydrophobic residues in both the P1 and P1' positions. The active site is located at the groove formed by the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors in the active site. Specificity is determined by nearest-neighbor hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. The enzymes are mostly secreted from cells as inactive proenzymes that activate autocatalytically at acidic pH. Length = 265
>gnl|CDD|133138 cd05471, pepsin_like, Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>gnl|CDD|178691 PLN03146, PLN03146, aspartyl protease family protein; Provisional Back     alignment and domain information
>gnl|CDD|133139 cd05472, cnd41_like, Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>gnl|CDD|133160 cd06096, Plasmepsin_5, Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>gnl|CDD|133142 cd05475, nucellin_like, Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>gnl|CDD|215663 pfam00026, Asp, Eukaryotic aspartyl protease Back     alignment and domain information
>gnl|CDD|133161 cd06097, Aspergillopepsin_like, Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>gnl|CDD|133144 cd05477, gastricsin, Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>gnl|CDD|133156 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>gnl|CDD|133141 cd05474, SAP_like, SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>gnl|CDD|133155 cd05488, Proteinase_A_fungi, Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>gnl|CDD|133137 cd05470, pepsin_retropepsin_like, Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>gnl|CDD|133140 cd05473, beta_secretase_like, Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information
>gnl|CDD|133157 cd05490, Cathepsin_D2, Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information
>gnl|CDD|133154 cd05487, renin_like, Renin stimulates production of angiotensin and thus affects blood pressure Back     alignment and domain information
>gnl|CDD|133145 cd05478, pepsin_A, Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>gnl|CDD|240300 PTZ00165, PTZ00165, aspartyl protease; Provisional Back     alignment and domain information
>gnl|CDD|133141 cd05474, SAP_like, SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>gnl|CDD|133162 cd06098, phytepsin, Phytepsin, a plant homolog of mammalian lysosomal pepsins Back     alignment and domain information
>gnl|CDD|133152 cd05485, Cathepsin_D_like, Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information
>gnl|CDD|133153 cd05486, Cathespin_E, Cathepsin E, non-lysosomal aspartic protease Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 484
PLN03146431 aspartyl protease family protein; Provisional 100.0
PTZ00165482 aspartyl protease; Provisional 100.0
cd05478317 pepsin_A Pepsin A, aspartic protease produced in g 100.0
KOG1339398 consensus Aspartyl protease [Posttranslational mod 100.0
cd05490325 Cathepsin_D2 Cathepsin_D2, pepsin family of protei 100.0
cd05477318 gastricsin Gastricsins, asparate proteases produce 100.0
cd05486316 Cathespin_E Cathepsin E, non-lysosomal aspartic pr 100.0
cd06096326 Plasmepsin_5 Plasmepsins are a class of aspartic p 100.0
cd06098317 phytepsin Phytepsin, a plant homolog of mammalian 100.0
cd05487326 renin_like Renin stimulates production of angioten 100.0
cd05472299 cnd41_like Chloroplast Nucleoids DNA-binding Prote 100.0
cd05488320 Proteinase_A_fungi Fungal Proteinase A , aspartic 100.0
cd05485329 Cathepsin_D_like Cathepsin_D_like, pepsin family o 100.0
PTZ00147453 plasmepsin-1; Provisional 100.0
PTZ00013450 plasmepsin 4 (PM4); Provisional 100.0
cd05473364 beta_secretase_like Beta-secretase, aspartic-acid 100.0
cd05475273 nucellin_like Nucellins, plant aspartic proteases 100.0
cd05489362 xylanase_inhibitor_I_like TAXI-I inhibits degradat 100.0
cd05476265 pepsin_A_like_plant Chroloplast Nucleoids DNA-bind 100.0
cd06097278 Aspergillopepsin_like Aspergillopepsin_like, aspar 100.0
PF00026317 Asp: Eukaryotic aspartyl protease The Prosite entr 100.0
cd05474295 SAP_like SAPs, pepsin-like proteinases secreted fr 100.0
cd05471283 pepsin_like Pepsin-like aspartic proteases, biloba 100.0
PF14543164 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 99.96
PF14541161 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 99.9
cd05470109 pepsin_retropepsin_like Cellular and retroviral pe 99.88
cd0548396 retropepsin_like_bacteria Bacterial aspartate prot 97.85
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 96.46
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 96.24
PF08284135 RVP_2: Retroviral aspartyl protease; InterPro: IPR 95.63
PF1365090 Asp_protease_2: Aspartyl protease 95.32
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 93.75
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 92.85
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 92.41
cd0609586 RP_RTVL_H_like Retropepsin of the RTVL_H family of 90.15
TIGR03698107 clan_AA_DTGF clan AA aspartic protease, AF_0612 fa 89.02
PF1397572 gag-asp_proteas: gag-polyprotein putative aspartyl 87.19
PF12384177 Peptidase_A2B: Ty3 transposon peptidase; InterPro: 85.2
PF1365090 Asp_protease_2: Aspartyl protease 85.13
PF1397572 gag-asp_proteas: gag-polyprotein putative aspartyl 81.5
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 81.32
>PLN03146 aspartyl protease family protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=4.6e-61  Score=490.31  Aligned_cols=403  Identities=28%  Similarity=0.470  Sum_probs=309.2

Q ss_pred             HHHHHHHHHHHhhccccCcceeEEeEeecCC------Cc----ccHHHHHHHhHHHHHHHhhc--cCCCCCCCCCcCCcc
Q 011500            7 NCLCIVLIATAAVGGVSSNHGVFSVKYRYAG------RE----RSLSLLKEHDARRQQRILAG--VDLPLGGSSRPDGVG   74 (484)
Q Consensus         7 ~~~~ll~l~~a~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~r~~~~~~~--~~~p~~~~~~~~~~~   74 (484)
                      +.++|+.+.+.++..+.....++++.|+.++      +.    ..+.+..+++++|.+++.+.  ...|+.. +....++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~   83 (431)
T PLN03146          5 LALCLFSFSELSAAEAPKGGFTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFRPTDASPNDPQS-DLISNGG   83 (431)
T ss_pred             HHHHHHHHhhhhhccccCCceEEEEEeCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhccccCCcccc-CcccCCc
Confidence            3344444444444555566678888776642      11    22444555666665554321  2234432 2234678


Q ss_pred             cEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCCCCCCCC
Q 011500           75 LYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTA  154 (484)
Q Consensus        75 ~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~c~~C~~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~~~~~c~~  154 (484)
                      .|+++|+||||||++.|++||||+++||+|.+|..|..+.     ++.|||++|+||+.++|+++.|..++.  ...|..
T Consensus        84 ~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~-----~~~fdps~SST~~~~~C~s~~C~~~~~--~~~c~~  156 (431)
T PLN03146         84 EYLMNISIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQV-----SPLFDPKKSSTYKDVSCDSSQCQALGN--QASCSD  156 (431)
T ss_pred             cEEEEEEcCCCCceEEEEECCCCCcceEcCCCCcccccCC-----CCcccCCCCCCCcccCCCCcccccCCC--CCCCCC
Confidence            9999999999999999999999999999999999998654     379999999999999999999987643  235766


Q ss_pred             CCCCceeEEeCCCCcEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCcccceeeecCCCCCcHHHHH
Q 011500          155 NTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQL  234 (484)
Q Consensus       155 ~~~~~~~~~Y~~gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~L  234 (484)
                      ++.|.|.+.|+||+.+.|.+++|+|+|++....   ...++++.|||++...+.|.    ...+||||||++..|++.||
T Consensus       157 ~~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~---~~~v~~~~FGc~~~~~g~f~----~~~~GilGLG~~~~Sl~sql  229 (431)
T PLN03146        157 ENTCTYSYSYGDGSFTKGNLAVETLTIGSTSGR---PVSFPGIVFGCGHNNGGTFD----EKGSGIVGLGGGPLSLISQL  229 (431)
T ss_pred             CCCCeeEEEeCCCCceeeEEEEEEEEeccCCCC---cceeCCEEEeCCCCCCCCcc----CCCceeEecCCCCccHHHHh
Confidence            677999999999998899999999999875322   12356899999998776552    25799999999999999999


Q ss_pred             HhcCCCCcceeeeecCC----CCcceEEeCCcCC---CCceEeeCCCC--CCceEEEEeEEEEccEEeecCCcccccCCC
Q 011500          235 ASSGGVRKMFAHCLDGI----NGGGIFAIGHVVQ---PEVNKTPLVPN--QPHYSINMTAVQVGLDFLNLPTDVFGVGDN  305 (484)
Q Consensus       235 ~~~g~i~~~FSl~l~~~----~~~G~l~~Ggid~---~~~~~~p~~~~--~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~  305 (484)
                      ..+  +.++||+||.+.    ...|.|+||+..+   ..+.|+|++.+  +.+|.|++++|+||++.+.++...+...+.
T Consensus       230 ~~~--~~~~FSycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~  307 (431)
T PLN03146        230 GSS--IGGKFSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVEE  307 (431)
T ss_pred             hHh--hCCcEEEECCCCCCCCCCcceEEeCCccccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccccCCC
Confidence            763  556999999752    2478999999642   24889999843  468999999999999998877665543345


Q ss_pred             CcEEEccccceeecChhhHHHHHHHHHhhCCCCcccc-cCCCCceeccCCCccCCCceEEEEECCCcEEEECCCeeeEEc
Q 011500          306 KGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHT-VHDEYTCFQYSESVDEGFPNVTFHFENSVSLKVYPHEYLFPF  384 (484)
Q Consensus       306 ~~aiiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~-~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~~~l~p~~y~~~~  384 (484)
                      ..+||||||++++||+++|+++.+++.+......... ......||.....  ..+|+|+|+| +|+.+.|+|++|+++.
T Consensus       308 g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~--~~~P~i~~~F-~Ga~~~l~~~~~~~~~  384 (431)
T PLN03146        308 GNIIIDSGTTLTLLPSDFYSELESAVEEAIGGERVSDPQGLLSLCYSSTSD--IKLPIITAHF-TGADVKLQPLNTFVKV  384 (431)
T ss_pred             CcEEEeCCccceecCHHHHHHHHHHHHHHhccccCCCCCCCCCccccCCCC--CCCCeEEEEE-CCCeeecCcceeEEEc
Confidence            6799999999999999999999999887664322111 1123589874322  4689999999 7899999999999986


Q ss_pred             -CCeEEEEEeccCcccCCCCCeeeechhhhceeEEEEeCCCCEEEEEeCCCCC
Q 011500          385 -EDLWCIGWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEYNCSS  436 (484)
Q Consensus       385 -~~~~C~~i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~~~rIGfA~~~c~~  436 (484)
                       ++..|+++....       +.||||+.|||++|++||++++|||||+.+|+.
T Consensus       385 ~~~~~Cl~~~~~~-------~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~~  430 (431)
T PLN03146        385 SEDLVCFAMIPTS-------SIAIFGNLAQMNFLVGYDLESKTVSFKPTDCTK  430 (431)
T ss_pred             CCCcEEEEEecCC-------CceEECeeeEeeEEEEEECCCCEEeeecCCcCc
Confidence             567899887542       359999999999999999999999999999973

>PTZ00165 aspartyl protease; Provisional Back     alignment and domain information
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease Back     alignment and domain information
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins Back     alignment and domain information
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure Back     alignment and domain information
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information
>PTZ00147 plasmepsin-1; Provisional Back     alignment and domain information
>PTZ00013 plasmepsin 4 (PM4); Provisional Back     alignment and domain information
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077 Back     alignment and domain information
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A Back     alignment and domain information
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A Back     alignment and domain information
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses) Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements Back     alignment and domain information
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family Back     alignment and domain information
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease Back     alignment and domain information
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query484
1htr_B329 Crystal And Molecular Structures Of Human Progastri 3e-08
3fv3_A339 Secreted Aspartic Protease 1 From Candida Parapsilo 3e-08
2qzw_A341 Secreted Aspartic Proteinase (Sap) 1 From Candida A 9e-08
2zjk_A405 Crystal Structure Of The Human Bace1 Catalytic Doma 6e-07
1b5f_A239 Native Cardosin A From Cynara Cardunculus L. Length 8e-07
2vie_A392 Human Bace-1 In Complex With N-((1s,2r)-1-Benzyl-2- 9e-07
2q11_A388 Structure Of Bace Complexed To Compound 1 Length = 1e-06
2q15_A385 Structure Of Bace Complexed To Compound 3a Length = 1e-06
3aup_A403 Crystal Structure Of Basic 7s Globulin From Soybean 2e-06
2qzl_A411 Crystal Structure Of Human Beta Secretase Complexed 3e-06
1tqf_A405 Crystal Structure Of Human Beta Secretase Complexed 3e-06
3exo_A413 Crystal Structure Of Bace1 Bound To Inhibitor Lengt 3e-06
3tpj_A433 Apo Structure Of Bace1 Length = 433 3e-06
3qi1_A408 Design And Synthesis Of Hydroxyethylamine (Hea) Bac 3e-06
3lpi_A455 Structure Of Bace Bound To Sch745132 Length = 455 3e-06
2va5_A455 X-Ray Crystal Structure Of Beta Secretase Complexed 4e-06
2hiz_A455 Crystal Structure Of Human Beta-Secretase (Bace) In 4e-06
1ym2_A402 Crystal Structure Of Human Beta Secretase Complexed 6e-06
1fkn_A391 Structure Of Beta-Secretase Complexed With Inhibito 6e-06
3kmx_A395 Structure Of Bace Bound To Sch346572 Length = 395 6e-06
3r1g_B402 Structure Basis Of Allosteric Inhibition Of Bace1 B 7e-06
3dm6_A406 Beta-Secretase 1 Complexed With Statine-Based Inhib 7e-06
3bra_A409 Bace-1 Complexed With Compound 1 Length = 409 7e-06
2qk5_A395 Structure Of Bace1 Bound To Sch626485 Length = 395 7e-06
1sgz_A389 Crystal Structure Of Unbound Beta-Secretase Catalyt 7e-06
3cib_A390 Structure Of Bace Bound To Sch727596 Length = 390 7e-06
3ixk_A405 Potent Beta-Secretase 1 Inhibitor Length = 405 7e-06
4dpf_A391 Bace-1 In Complex With A Hea-Macrocyclic Type Inhib 7e-06
3u6a_A390 Rational Design And Synthesis Of Aminopiperazinones 7e-06
4ewo_A386 Design And Synthesis Of Potent Hydroxyethylamine (H 8e-06
2hm1_A406 Crystal Structure Of Human Beta-Secretase (Bace) In 8e-06
2zjn_A405 Crystal Structure Of The Human Bace1 Catalytic Doma 8e-06
2fdp_A388 Crystal Structure Of Beta-Secretase Complexed With 8e-06
3udh_A404 Crystal Structure Of Bace With Compound 1 Length = 8e-06
3vv6_A416 Crystal Structure Of Beta Secetase In Complex With 8e-06
2of0_A402 X-Ray Crystal Structure Of Beta Secretase Complexed 9e-06
2wjo_A412 Human Bace (Beta Secretase) In Complex With Cyclohe 9e-06
4b1d_A388 New Aminoimidazoles As Bace-1 Inhibitors: From Rati 9e-06
1w50_A411 Apo Structure Of Bace (beta Secretase) Length = 411 9e-06
3tpr_A433 Crystal Structure Of Bace1 Complexed With An Inhibi 9e-06
1ym4_A408 Crystal Structure Of Human Beta Secretase Complexed 9e-06
3ckp_A412 Crystal Structure Of Bace-1 In Complex With Inhibit 9e-06
3l58_A414 Structure Of Bace Bound To Sch589432 Length = 414 1e-05
2zhr_A411 Crystal Structure Of Bace1 In Complex With Om99-2 A 1e-05
3hvg_A411 Structure Of Bace (Beta Secretase) In Complex With 1e-05
2qu2_A415 Bace1 With Compound 1 Length = 415 1e-05
1psa_A326 Structure Of A Pepsin(Slash)renin Inhibitor Complex 1e-05
2zjj_A405 Crystal Structure Of The Human Bace1 Catalytic Doma 1e-05
1f34_A326 Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bou 1e-05
2zjh_A405 Crystal Structure Of The Human Bace1 Catalytic Doma 1e-05
2zji_A405 Crystal Structure Of The Human Bace1 Catalytic Doma 1e-05
1g0v_A329 The Structure Of Proteinase A Complexed With A Ia3 2e-05
3pep_A326 Revised 2.3 Angstroms Structure Of Porcine Pepsin. 3e-05
3vla_A413 Crystal Structure Of Edgp Length = 413 3e-05
3psg_A370 The High Resolution Crystal Structure Of Porcine Pe 3e-05
3vlb_A413 Crystal Structure Of Xeg-Edgp Length = 413 3e-05
5pep_A326 X-Ray Analyses Of Aspartic Proteases. Ii. Three-Dim 3e-05
4pep_A326 The Molecular And Crystal Structures Of Monoclinic 3e-05
1dp5_A329 The Structure Of Proteinase A Complexed With A Ia3 4e-05
2psg_A370 Refined Structure Of Porcine Pepsinogen At 1.8 Angs 4e-05
1pso_E326 The Crystal Structure Of Human Pepsin And Its Compl 4e-05
2ewy_A383 Crystal Structure Of Human Bace2 In Complex With A 5e-05
1flh_A326 Crystal Structure Of Human Uropepsin At 2.45 A Reso 6e-05
3oad_A166 Design And Optimization Of New Piperidines As Renin 6e-05
3d91_A341 Human Renin In Complex With Remikiren Length = 341 6e-05
2i4q_A336 Human ReninPF02342674 COMPLEX Length = 336 6e-05
1hrn_A337 High Resolution Crystal Structures Of Recombinant H 6e-05
3vcm_A335 Crystal Structure Of Human Prorenin Length = 335 6e-05
2bks_A340 Crystal Structure Of Renin-Pf00074777 Complex Lengt 7e-05
2g24_A333 Ketopiperazine-Based Renin Inhibitors: Optimization 7e-05
4aa9_A320 Camel Chymosin At 1.6a Resolution Length = 320 7e-05
2x0b_A383 Crystal Structure Of Human Angiotensinogen Complexe 8e-05
2jxr_A329 Structure Of Yeast Proteinase A Length = 329 8e-05
1eag_A342 Secreted Aspartic Proteinase (Sap2) From Candida Al 9e-05
2h6s_A340 Secreted Aspartic Proteinase (sap) 3 From Candida A 2e-04
4b1c_A375 New Aminoimidazoles As Bace-1 Inhibitors: From Rati 2e-04
1lyw_A97 Cathepsin D At Ph 7.5 Length = 97 4e-04
3c9x_A329 Crystal Structure Of Trichoderma Reesei Aspartic Pr 5e-04
1qdm_A478 Crystal Structure Of Prophytepsin, A Zymogen Of A B 8e-04
3cms_A323 Engineering Enzyme Sub-Site Specificity: Preparatio 9e-04
1czi_E323 Chymosin Complex With The Inhibitor Cp-113972 Lengt 9e-04
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At 1.62 Angstroms Resolution Length = 329 Back     alignment and structure 
Iteration: 1

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 84/370 (22%), Positives = 147/370 (39%), Gaps = 74/370 (20%)
Query: 76  YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKE--CPRRSSLGIELTLYDIKDSSTGKF 133
           Y+ +I IGTPP+++ V  DTGS  +WV  + C+   C   S        ++  +SST  +
Sbjct: 14  YFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQSQACTSHSR-------FNPSESST--Y 64
Query: 134 VTCDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTST 193
            T  Q F                       YG GS  TG+F  D +    +    Q    
Sbjct: 65  STNGQTFSLQ--------------------YGSGS-LTGFFGYDTLTVQSIQVPNQE--- 100
Query: 194 NGSLIFGCGARQSGNLDSTN--EEALDGIIGFG-------KSNSSMISQLASSGGVRKMF 244
                FG    + G    TN      DGI+G         ++ ++M   +        +F
Sbjct: 101 -----FGLSENEPG----TNFVYAQFDGIMGLAYPALSVDEATTAMQGMVQEGALTSPVF 151
Query: 245 AHCLDGING--GGIFAIGHVVQPEVNKTPLVPNQPHYSINMTAV--QVGLDFLNLPTDVF 300
           +  L    G  GG    G V       + L   Q +++     +  Q+G++   +     
Sbjct: 152 SVYLSNQQGSSGGAVVFGGV------DSSLYTGQIYWAPVTQELYWQIGIEEFLIGGQAS 205
Query: 301 G-VGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEG 359
           G   +    I+D+GT+L  +P+     L+    +Q+         DEY  F  + +  + 
Sbjct: 206 GWCSEGCQAIVDTGTSLLTVPQQYMSALLQATGAQE---------DEYGQFLVNCNSIQN 256
Query: 360 FPNVTFHFENSVSLKVYPHEYLFPFEDLWCIGWQNSGMQSRDRKNMTLLGDLVLSNKLVL 419
            P++TF   N V   + P  Y+        +G + + + S++ + + +LGD+ L +   +
Sbjct: 257 LPSLTFII-NGVEFPLPPSSYILSNNGYCTVGVEPTYLSSQNGQPLWILGDVFLRSYYSV 315
Query: 420 YDLENQVIGW 429
           YDL N  +G+
Sbjct: 316 YDLGNNRVGF 325
>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In Complex With Pepstatin A Length = 339 Back     alignment and structure
>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans Length = 341 Back     alignment and structure
>pdb|2ZJK|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic Acid(3-Mercapto-Propyl)-Amide Length = 405 Back     alignment and structure
>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L. Length = 239 Back     alignment and structure
>pdb|2VIE|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-1-Benzyl-2-Hydroxy- 3-((1,1, 5-Trimethylhexyl)amino)propyl)-3-(Ethylamino)-5-(2- Oxopyrrolidin-1-Yl)benzamide Length = 392 Back     alignment and structure
>pdb|2Q11|A Chain A, Structure Of Bace Complexed To Compound 1 Length = 388 Back     alignment and structure
>pdb|2Q15|A Chain A, Structure Of Bace Complexed To Compound 3a Length = 385 Back     alignment and structure
>pdb|3AUP|A Chain A, Crystal Structure Of Basic 7s Globulin From Soybean Length = 403 Back     alignment and structure
>pdb|2QZL|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Ixs Length = 411 Back     alignment and structure
>pdb|1TQF|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Inhibitor Length = 405 Back     alignment and structure
>pdb|3EXO|A Chain A, Crystal Structure Of Bace1 Bound To Inhibitor Length = 413 Back     alignment and structure
>pdb|3TPJ|A Chain A, Apo Structure Of Bace1 Length = 433 Back     alignment and structure
>pdb|3QI1|A Chain A, Design And Synthesis Of Hydroxyethylamine (Hea) Bace-1 Inhibitors: Prime Side Chromane-Containing Inhibitors Length = 408 Back     alignment and structure
>pdb|3LPI|A Chain A, Structure Of Bace Bound To Sch745132 Length = 455 Back     alignment and structure
>pdb|2VA5|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With Compound 8c Length = 455 Back     alignment and structure
>pdb|2HIZ|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The Presence Of An Inhibitor Length = 455 Back     alignment and structure
>pdb|1YM2|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Nvp-Aur200 Length = 402 Back     alignment and structure
>pdb|1FKN|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor Length = 391 Back     alignment and structure
>pdb|3KMX|A Chain A, Structure Of Bace Bound To Sch346572 Length = 395 Back     alignment and structure
>pdb|3R1G|B Chain B, Structure Basis Of Allosteric Inhibition Of Bace1 By An Exosite- Binding Antibody Length = 402 Back     alignment and structure
>pdb|3DM6|A Chain A, Beta-Secretase 1 Complexed With Statine-Based Inhibitor Length = 406 Back     alignment and structure
>pdb|3BRA|A Chain A, Bace-1 Complexed With Compound 1 Length = 409 Back     alignment and structure
>pdb|2QK5|A Chain A, Structure Of Bace1 Bound To Sch626485 Length = 395 Back     alignment and structure
>pdb|1SGZ|A Chain A, Crystal Structure Of Unbound Beta-Secretase Catalytic Domain. Length = 389 Back     alignment and structure
>pdb|3CIB|A Chain A, Structure Of Bace Bound To Sch727596 Length = 390 Back     alignment and structure
>pdb|3IXK|A Chain A, Potent Beta-Secretase 1 Inhibitor Length = 405 Back     alignment and structure
>pdb|4DPF|A Chain A, Bace-1 In Complex With A Hea-Macrocyclic Type Inhibitor Length = 391 Back     alignment and structure
>pdb|3U6A|A Chain A, Rational Design And Synthesis Of Aminopiperazinones As Beta Secretase (Bace) Inhibitors Length = 390 Back     alignment and structure
>pdb|4EWO|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea) Bace-1 Inhibitors Length = 386 Back     alignment and structure
>pdb|2HM1|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The Presence Of An Inhibitor (2) Length = 406 Back     alignment and structure
>pdb|2ZJN|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)- Piperidin-4-Yl]-2-(2-Methyl-4-Sulfamoyl-Phenoxy)- Acetamide Length = 405 Back     alignment and structure
>pdb|2FDP|A Chain A, Crystal Structure Of Beta-Secretase Complexed With An Amino- Ethylene Inhibitor Length = 388 Back     alignment and structure
>pdb|3UDH|A Chain A, Crystal Structure Of Bace With Compound 1 Length = 404 Back     alignment and structure
>pdb|3VV6|A Chain A, Crystal Structure Of Beta Secetase In Complex With 2-Amino-3-Methyl-6- ((1s, 2r)-2-Phenylcyclopropyl)pyrimidin-4(3h)-One Length = 416 Back     alignment and structure
>pdb|2OF0|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With Compound 5 Length = 402 Back     alignment and structure
>pdb|2WJO|A Chain A, Human Bace (Beta Secretase) In Complex With Cyclohexanecarboxylic Acid (2-(2-Am Ino-6-Phenoxy-4h- Quinazolin-3-Yl)-2-Cyclohexyl-Ethyl)-Amide Length = 412 Back     alignment and structure
>pdb|4B1D|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational Design To Ab-Lowering In Brain Length = 388 Back     alignment and structure
>pdb|1W50|A Chain A, Apo Structure Of Bace (beta Secretase) Length = 411 Back     alignment and structure
>pdb|3TPR|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor Length = 433 Back     alignment and structure
>pdb|1YM4|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Nvp-Amk640 Length = 408 Back     alignment and structure
>pdb|3CKP|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor Length = 412 Back     alignment and structure
>pdb|3L58|A Chain A, Structure Of Bace Bound To Sch589432 Length = 414 Back     alignment and structure
>pdb|2ZHR|A Chain A, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph 5.0 Length = 411 Back     alignment and structure
>pdb|3HVG|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ev0 Length = 411 Back     alignment and structure
>pdb|2QU2|A Chain A, Bace1 With Compound 1 Length = 415 Back     alignment and structure
>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex Reveals A Novel Crystal Packing Induced By Minor Chemical Alterations In The Inhibitor Length = 326 Back     alignment and structure
>pdb|2ZJJ|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic Acid (2-Mercapto-Ethyl)- Amide Length = 405 Back     alignment and structure
>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To Porcine Pepsin Length = 326 Back     alignment and structure
>pdb|2ZJH|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With N-(1-Benzyl-Piperidin-4-Yl)-4-Mercapto-Butyramide Length = 405 Back     alignment and structure
>pdb|2ZJI|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With N-[1-(2, 6-Dimethoxy-Benzyl)-Piperidin-4-Yl]-4-Mercapto- Butyramide Length = 405 Back     alignment and structure
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant, Mvv Length = 329 Back     alignment and structure
>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin. Evidence For A Flexible Subdomain Length = 326 Back     alignment and structure
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp Length = 413 Back     alignment and structure
>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine Pepsinogen Length = 370 Back     alignment and structure
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp Length = 413 Back     alignment and structure
>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii. Three-Dimensional Structure Of The Hexagonal Crystal Form Of Porcine Pepsin At 2.3 Angstroms Resolution Length = 326 Back     alignment and structure
>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine Pepsin Refined At 1.8 Angstroms Resolution Length = 326 Back     alignment and structure
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant Inhibitor Length = 329 Back     alignment and structure
>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms Resolution Length = 370 Back     alignment and structure
>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With Pepstatin Length = 326 Back     alignment and structure
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A Hydroxyethylenamine Transition-State Inhibitor Length = 383 Back     alignment and structure
>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution Length = 326 Back     alignment and structure
>pdb|3OAD|A Chain A, Design And Optimization Of New Piperidines As Renin Inhibitors Length = 166 Back     alignment and structure
>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren Length = 341 Back     alignment and structure
>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX Length = 336 Back     alignment and structure
>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human Renin In Complex With Polyhydroxymonoamide Inhibitors Length = 337 Back     alignment and structure
>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin Length = 335 Back     alignment and structure
>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex Length = 340 Back     alignment and structure
>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The "c" Ring Length = 333 Back     alignment and structure
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution Length = 320 Back     alignment and structure
>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With Renin Length = 383 Back     alignment and structure
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A Length = 329 Back     alignment and structure
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans Complexed With A70450 Length = 342 Back     alignment and structure
>pdb|2H6S|A Chain A, Secreted Aspartic Proteinase (sap) 3 From Candida Albicans Length = 340 Back     alignment and structure
>pdb|4B1C|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational Design To Ab-Lowering In Brain Length = 375 Back     alignment and structure
>pdb|1LYW|A Chain A, Cathepsin D At Ph 7.5 Length = 97 Back     alignment and structure
>pdb|3C9X|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic Proteinase Length = 329 Back     alignment and structure
>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley Vacuolar Aspartic Proteinase. Length = 478 Back     alignment and structure
>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation, Kinetic Characterization And X-Ray Analysis At 2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf Chymosin Length = 323 Back     alignment and structure
>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972 Length = 323 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query484
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 5e-83
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 8e-75
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 3e-72
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 3e-32
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 2e-31
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 2e-31
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 2e-31
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 4e-30
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 6e-30
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 2e-29
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 3e-29
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 7e-28
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 1e-26
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 4e-25
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 4e-25
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 1e-23
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 5e-23
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 8e-23
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 8e-23
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 1e-22
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 6e-22
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 7e-22
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 7e-22
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 8e-22
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 1e-21
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 9e-21
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 1e-20
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 9e-20
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 1e-18
1qdm_A478 Prophytepsin; aspartic proteinases, saposin-like d 9e-17
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 9e-17
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 3e-16
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 6e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-08
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 8e-07
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Length = 403 Back     alignment and structure
 Score =  261 bits (667), Expect = 5e-83
 Identities = 79/402 (19%), Positives = 135/402 (33%), Gaps = 39/402 (9%)

Query: 57  LAGVDLPLGGSSRPDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSL 116
           +  V LP+         GL++A +   TP     V VD   + +WVNC Q        + 
Sbjct: 7   INLVVLPVQNDG---STGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQYSSKTYQAP 63

Query: 117 GIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQ 176
                       S      C               C  NT            +  G   +
Sbjct: 64  -----FCHSTQCSRANTHQCLSCPA-----ASRPGCHKNTCGLMSTNPITQQTGLGELGE 113

Query: 177 DVVQYDKVSGDLQTTSTNGS---LIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQ 233
           DV+      G  Q      +    +F C                 G+ G G +  S+ +Q
Sbjct: 114 DVLAIHATQGSTQQLGPLVTVPQFLFSCAPSFLVQKGL--PRNTQGVAGLGHAPISLPNQ 171

Query: 234 LASSGGVRKMFAHCLDGI-NGGGIFAIG-----------HVVQPEVNKTPLVPN-QPHYS 280
           LAS  G+++ F  CL       G    G             +  ++  TPL    Q  Y+
Sbjct: 172 LASHFGLQRQFTTCLSRYPTSKGAIIFGDAPNNMRQFQNQDIFHDLAFTPLTITLQGEYN 231

Query: 281 INMTAVQVG---LDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPD 337
           + + ++++    +  LN  +       + GT+I + T    L + VY+        Q P 
Sbjct: 232 VRVNSIRINQHSVFPLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPK 291

Query: 338 L-KVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKVYPHEYLFPFED-LWCIGWQNS 395
             +V +V     CF  ++       ++     N    ++   + +   +  + C+G  N 
Sbjct: 292 QAQVKSVAPFGLCFNSNKINAYPSVDLVMDKPNGPVWRISGEDLMVQAQPGVTCLGVMNG 351

Query: 396 GMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEYNCSSS 437
           GMQ R       LG   L   LV++DL    +G++  +  S 
Sbjct: 352 GMQPRA---EITLGARQLEENLVVFDLARSRVGFSTSSLHSH 390
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Length = 413 Back     alignment and structure
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Length = 381 Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Length = 455 Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Length = 342 Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Length = 383 Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Length = 329 Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Length = 334 Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Length = 342 Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Length = 329 Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} PDB: 3tne_A* Length = 339 Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Length = 395 Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Length = 325 Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Length = 323 Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Length = 323 Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Length = 323 Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Length = 361 Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Length = 325 Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Length = 324 Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Length = 451 Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Length = 453 Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Length = 329 Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Length = 329 Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Length = 351 Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Length = 341 Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Length = 375 Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Length = 383 Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Length = 370 Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Length = 340 Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Length = 478 Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Length = 239 Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Length = 330 Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Length = 97 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Length = 241 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query484
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 100.0
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 100.0
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 100.0
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 100.0
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 100.0
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 100.0
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 100.0
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 100.0
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 100.0
4aa9_A320 Chymosin; hydrolase, aspartic peptidase, rennet; H 100.0
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 100.0
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 100.0
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 100.0
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 100.0
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 100.0
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 100.0
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 100.0
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 100.0
1qdm_A478 Prophytepsin; aspartic proteinases, saposin-like d 100.0
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 100.0
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 100.0
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 100.0
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 100.0
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 100.0
3vf3_A402 Beta-secretase 1; structure-based drug design, hyd 100.0
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 100.0
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 100.0
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 100.0
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 100.0
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 100.0
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 100.0
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 100.0
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 100.0
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 100.0
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 100.0
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 99.87
1b5f_B87 Protein (cardosin A); hydrolase, aspartic proteina 99.71
3s8i_A148 Protein DDI1 homolog 1; protease, structural genom 95.14
2i1a_A148 DNA damage-inducible protein DDI1; acid protease f 95.02
2hs1_A99 HIV-1 protease; ultra-high resolution active site 84.22
1fmb_A104 EIAV protease; hydrolase (acid proteinase), RNA-di 83.38
3ec0_A99 Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1 80.54
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Back     alignment and structure
Probab=100.00  E-value=2.7e-59  Score=470.01  Aligned_cols=306  Identities=24%  Similarity=0.418  Sum_probs=253.8

Q ss_pred             cCCcccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCCC
Q 011500           70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPL  149 (484)
Q Consensus        70 ~~~~~~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~c~~C~~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~~~  149 (484)
                      ++.+.+|+++|+||||||+|.|+|||||+++||+|..|..|     .|..++.|||++|+||+...              
T Consensus        52 n~~d~~Y~~~i~iGTPpQ~~~v~~DTGSs~lWV~s~~C~~~-----~C~~~~~y~~~~SsT~~~~~--------------  112 (370)
T 3psg_A           52 NYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSL-----ACSDHNQFNPDDSSTFEATS--------------  112 (370)
T ss_dssp             GGTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSG-----GGTTSCCBCGGGCTTCEEEE--------------
T ss_pred             eccCCEEEEEEEEcCCCCEEEEEEeCCCCccEEECCCCCCc-----ccCCCCCCCCccCcCcEECC--------------
Confidence            57789999999999999999999999999999999998642     23335799999999999966              


Q ss_pred             CCCCCCCCCceeEEeCCCCcEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCcccceeeecCCCCC-
Q 011500          150 TDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNS-  228 (484)
Q Consensus       150 ~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~-  228 (484)
                              |.|.+.|++|+ +.|.+++|+|+|++..+        +++.|||+....+.+.  ....+|||||||++.. 
T Consensus       113 --------~~~~i~Yg~Gs-~~G~~~~Dtv~ig~~~v--------~~~~Fg~a~~~~~~~~--~~~~~dGIlGLg~~~~s  173 (370)
T 3psg_A          113 --------QELSITYGTGS-MTGILGYDTVQVGGISD--------TNQIFGLSETEPGSFL--YYAPFDGILGLAYPSIS  173 (370)
T ss_dssp             --------EEEEEESSSCE-EEEEEEEEEEEETTEEE--------EEEEEEEECSCCCGGG--GGCSCSEEEECSCGGGC
T ss_pred             --------cEEEEEeCCce-EEEEEEEEEEeeCCccc--------CCeEEEEEEeeccccc--ccCCccceeccCCcccc
Confidence                    79999999998 89999999999988653        3899999998866432  4567899999999754 


Q ss_pred             -----cHHHHHHhcCCC-CcceeeeecCC-CCcceEEeCCcCCC----CceEeeCCCCCCceEEEEeEEEEccEEeecCC
Q 011500          229 -----SMISQLASSGGV-RKMFAHCLDGI-NGGGIFAIGHVVQP----EVNKTPLVPNQPHYSINMTAVQVGLDFLNLPT  297 (484)
Q Consensus       229 -----s~~~~L~~~g~i-~~~FSl~l~~~-~~~G~l~~Ggid~~----~~~~~p~~~~~~~w~v~l~~i~v~~~~~~~~~  297 (484)
                           +++++|++||+| +++||+||.+. ..+|.|+|||+|++    +++|+|+. .+.+|+|.+++|+||++.+..  
T Consensus       174 ~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~D~~~y~g~l~~~pv~-~~~~w~v~l~~i~v~g~~~~~--  250 (370)
T 3psg_A          174 ASGATPVFDNLWDQGLVSQDLFSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVS-VEGYWQITLDSITMDGETIAC--  250 (370)
T ss_dssp             GGGCCCHHHHHHHTTCSSSSEEEEEEC-----CEEEEETCCCGGGBSSCCEEEECS-EETTEEEEECEEESSSSEEEC--
T ss_pred             ccCCCCHHHHHHHCCCCCCCEEEEEEccCCCCCeEEEEEeeChHhcCCcceeeccc-ccceeEEEEeEEEECCEEEec--
Confidence                 689999999999 69999999985 45899999999975    58999998 578999999999999987642  


Q ss_pred             cccccCCCCcEEEccccceeecChhhHHHHHHHHHhhCCCCcccccCCCCceeccCCCccCCCceEEEEECCCcEEEECC
Q 011500          298 DVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKVYP  377 (484)
Q Consensus       298 ~~~~~~~~~~aiiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~~~l~p  377 (484)
                           ..++.+++||||+++++|.+++++|.+++++...    ..+.+.++|     .....+|+|+|+| +|.+++||+
T Consensus       251 -----~~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~~----~~g~~~v~C-----~~~~~lP~i~f~~-~g~~~~l~~  315 (370)
T 3psg_A          251 -----SGGCQAIVDTGTSLLTGPTSAIANIQSDIGASEN----SDGEMVISC-----SSIDSLPDIVFTI-DGVQYPLSP  315 (370)
T ss_dssp             -----TTCEEEEECTTCCSEEEEHHHHHHHHHHTTCEEC----TTCCEECCG-----GGGGGCCCEEEEE-TTEEEEECH
T ss_pred             -----CCCceEEEcCCCCcEECCHHHHHHHHHHhCCccc----CCCcEEEEC-----CCcccCCcEEEEE-CCEEEEECH
Confidence                 3467899999999999999999999999876532    112233455     4456789999999 999999999


Q ss_pred             CeeeEEcCCeEEE-EEeccCcccCCCCCeeeechhhhceeEEEEeCCCCEEEEEeCC
Q 011500          378 HEYLFPFEDLWCI-GWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEYN  433 (484)
Q Consensus       378 ~~y~~~~~~~~C~-~i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~~~rIGfA~~~  433 (484)
                      ++|+++ .+..|+ +|...+.+... ++.||||++|||++|+|||++|+|||||+++
T Consensus       316 ~~yi~~-~~~~C~~~~~~~~~~~~~-~~~~ILG~~Fl~~~y~vfD~~~~riGfA~a~  370 (370)
T 3psg_A          316 SAYILQ-DDDSCTSGFEGMDVPTSS-GELWILGDVFIRQYYTVFDRANNKVGLAPVA  370 (370)
T ss_dssp             HHHEEE-CSSCEEESEEEECCCTTS-CCEEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred             HHhccc-CCCEEEEEEEeCCCCCCC-CCcEEeChHHhcceEEEEECCCCEEEEEEcC
Confidence            999998 445797 67765432211 2479999999999999999999999999974
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Back     alignment and structure
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Back     alignment and structure
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A* Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Back     alignment and structure
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Back     alignment and structure
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ... Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Back     alignment and structure
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Back     alignment and structure
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens} Back     alignment and structure
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ... Back     alignment and structure
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A* Back     alignment and structure
>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 484
d1t6ex_381 b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Tr 2e-47
g1htr.1372 b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens 3e-38
d2qp8a1387 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Hum 2e-37
d1eaga_342 b.50.1.2 (A:) Acid protease {Yeast (Candida albica 4e-36
g1lya.1338 b.50.1.2 (A:,B:) Cathepsin D {Human (Homo sapiens) 3e-34
d2apra_325 b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus 4e-34
d3cmsa_323 b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos 2e-32
d1dpja_329 b.50.1.2 (A:) Acid protease {Baker's yeast (Saccha 1e-31
d1qdma2337 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase 4e-31
d3psga_370 b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxI 7e-31
d1j71a_334 b.50.1.2 (A:) Acid protease {Yeast (Candida tropic 1e-30
d1oewa_330 b.50.1.2 (A:) Endothiapepsin {Chestnut blight fung 2e-30
d1bxoa_323 b.50.1.2 (A:) Acid protease {Fungus (Penicillium j 1e-29
d1miqa_373 b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading e 2e-29
d1am5a_324 b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus mo 9e-29
d1smra_335 b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mu 1e-28
d1hrna_337 b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Ho 2e-28
g1b5f.1326 b.50.1.2 (A:,B:) Plant acid proteinase, phytepsin 3e-28
d2bjua1329 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrad 6e-28
d1mppa_357 b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840] 2e-27
d1izea_323 b.50.1.2 (A:) Acid protease {Fungus (Aspergillus o 3e-27
d1wkra_340 b.50.1.2 (A:) Acid protease {Irpex lacteus (Polypo 3e-24
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 381 Back     information, alignment and structure

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Xylanase inhibitor TAXI-I
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score =  166 bits (420), Expect = 2e-47
 Identities = 56/387 (14%), Positives = 108/387 (27%), Gaps = 46/387 (11%)

Query: 74  GLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKF 133
            LY      G       + +D    ++W  C   +         I  +      ++    
Sbjct: 14  SLYTIPFHDGAS-----LVLDVAGPLVWSTCDGGQPPA-----EIPCSSPTCLLANAYPA 63

Query: 134 VTCDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTST 193
             C    C        +D        Y      G+   G         +   G    +  
Sbjct: 64  PGCPAPSC-------GSDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKV 116

Query: 194 NGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGING 253
           N  ++  C   +             G+ G   S  ++ +Q+AS+  V   F  CL     
Sbjct: 117 NVGVLAACAPSKLLASLPRGS---TGVAGLANSGLALPAQVASAQKVANRFLLCLPTGGP 173

Query: 254 GGIFAIGHVVQP-----EVNKTPLVPNQ--PHYSINMTAVQVGLDFLNLPTDVFGVGDNK 306
           G     G  V        +  TPLV     P + I+  ++ VG   + +P      G   
Sbjct: 174 GVAIFGGGPVPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDTRVPVPEGALATG--- 230

Query: 307 GTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEY---------TCFQYS---- 353
           G ++ +      L   VY PL+            +                C+       
Sbjct: 231 GVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGN 290

Query: 354 ESVDEGFPNVTFHFENSVSLKVYPHEYLFPF-EDLWCIGWQNS--GMQSRDRKNMTLLGD 410
                  PNV    +      +     +    +   C+ +           R    +LG 
Sbjct: 291 NLGGYAVPNVQLGLDGGSDWTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGG 350

Query: 411 LVLSNKLVLYDLENQVIGWTEYNCSSS 437
             + + ++ +D+E + +G++     + 
Sbjct: 351 AQMEDFVLDFDMEKKRLGFSRLPHFTG 377
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Length = 387 Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Length = 342 Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Length = 325 Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Length = 323 Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Length = 329 Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 337 Back     information, alignment and structure
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Length = 370 Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 334 Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Length = 323 Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Length = 373 Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Length = 324 Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Length = 335 Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Length = 337 Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Length = 329 Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Length = 357 Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Length = 323 Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Length = 340 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query484
g1htr.1372 Pepsin(ogen) {Human (Homo sapiens), progastricsin 100.0
d3psga_370 Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} 100.0
d2apra_325 Acid protease {Bread mold (Rhizopus chinensis) [Ta 100.0
d1j71a_334 Acid protease {Yeast (Candida tropicalis) [TaxId: 100.0
d1dpja_329 Acid protease {Baker's yeast (Saccharomyces cerevi 100.0
d1smra_335 Chymosin (synonym: renin) {Mouse (Mus musculus) [T 100.0
d1oewa_330 Endothiapepsin {Chestnut blight fungus (Endothia p 100.0
d1am5a_324 Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 100.0
d1miqa_373 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
d1eaga_342 Acid protease {Yeast (Candida albicans) [TaxId: 54 100.0
d1hrna_337 Chymosin (synonym: renin) {Human (Homo sapiens) [T 100.0
d1mppa_357 Pepsin {Mucor pusillus [TaxId: 4840]} 100.0
d2qp8a1387 beta-secretase (memapsin) {Human (Homo sapiens) [T 100.0
g1lya.1338 Cathepsin D {Human (Homo sapiens) [TaxId: 9606]} 100.0
d3cmsa_323 Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId 100.0
d2bjua1329 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
d1wkra_340 Acid protease {Irpex lacteus (Polyporus tulipifera 100.0
d1izea_323 Acid protease {Fungus (Aspergillus oryzae) [TaxId: 100.0
d1bxoa_323 Acid protease {Fungus (Penicillium janthinellum), 100.0
d1qdma2337 Plant acid proteinase, phytepsin {Barley (Hordeum 100.0
d1t6ex_381 Xylanase inhibitor TAXI-I {Wheat (Triticum aestivu 100.0
g1b5f.1326 Plant acid proteinase, phytepsin {Cynara carduncul 100.0
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure