Citrus Sinensis ID: 011513

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480----
Protein Sequence
MLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAPEVAMEKLNPEKSPV
Secondary Structure (PSIPRED)
cEEEEEHHHccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHEEEEEEEEEccccccccHHHHHHHHHHHHHHHHccccEEEccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHHHcccccccccHHHccccccccccccccccccccEEHccEEEEccccccccccccccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcEEcccccccccccccccccccccc
Coil and Loop (DISEMBL)
MLVLSLTAAIsklhppdcgnqdsgacpgptpwQLAFLFTGLGLmvigaggirpcnlafgadqfnpntesgkqgITSFFNWYYFTFTFAMMISLTVIVYVQSDVswawglgiPAFMMFLSCAMFFLGSRLyakvkpegsplaSTVQVFVAAIKKRHlklpeepwltlhnhipkncinsklphtgqfrcldkaaimtpedqiksdgsainpwrlssmqKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALqsdrrvgnthfkipaASYAIFSMLGLTiwipiydriivprlqrltkkeggITILQRMAIGMILAIFTMIISGIIEDKRrslalsrpvgleqrrgaisslsglwlipqlsligfSEAFTIIAEVEFYYKqfpenmrsiGGSLAFVGFAISNYLNGFLISMVHRftkgastgdwlpedlnkgrlDYFYYLVAALGLLNFGFFLLCAKWYkykgsgdgapevameklnpekspv
Flexible Loop (DISEMBL)
MLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPedqiksdgsainpwrlssmQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAPEVameklnpekspv
Low Complexity Region (SEG)
MLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAAlgllnfgffllCAKWYKYKGSGDGAPEVAMEKLNPEKSPV
Disordered region (IsUnstruct)
*************************CPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTP*********AINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYK*********************
Disordered Region (DISOPRED)
MLVLSLTAAISKLHP***************PWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEP*******************TGQFRCLDKAAIMT***************RLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLE**RGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWY************************
Disordered Region (DISEMBL)
MLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAPEVAME*********
Disordered Region (DISPRO)
MLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHI***CINSKLPHTGQFRCLDKAAIMTPEDQI*SDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGS*******************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAPEVAMEKLNPEKSPV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	484	2.2.26 [Sep-21-2011]
Q9LV10	616	Probable peptide/nitrate	yes	no	0.962	0.756	0.565	1e-167
Q944G5	636	Probable peptide/nitrate	no	no	0.958	0.729	0.580	1e-162
Q9M9V7	587	Probable peptide/nitrate	no	no	0.989	0.816	0.555	1e-158
Q8RX77	620	Nitrate transporter 1.7 O	no	no	0.938	0.732	0.468	1e-124
Q9LFX9	576	Nitrate transporter 1.6 O	no	no	0.950	0.798	0.442	1e-109
Q9M390	570	Peptide transporter PTR1	no	no	0.933	0.792	0.402	2e-99
Q9LFB8	570	Peptide transporter PTR5	no	no	0.931	0.791	0.387	5e-95
Q9SX20	596	Probable nitrite transpor	no	no	0.944	0.766	0.409	2e-93
Q9CAR9	555	Putative peptide/nitrate	no	no	0.917	0.8	0.408	6e-91
P46032	585	Peptide transporter PTR2	no	no	0.935	0.774	0.374	3e-89

>sp|Q9LV10|PTR53_ARATH Probable peptide/nitrate transporter At5g62680 OS=Arabidopsis thaliana GN=At5g62680 PE=2 SV=1

 Score =  587 bits (1513), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 264/467 (56%), Positives = 359/467 (76%), Gaps = 1/467 (0%)

Query: 2   LVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGAD 61
            V+ LTAA+ +LHP  CG      C GP+  Q+AFL  GLG +V+GAGGIRPCNLAFGAD
Sbjct: 130 FVILLTAAVPQLHPAACGTAADSICNGPSGGQIAFLLMGLGFLVVGAGGIRPCNLAFGAD 189

Query: 62  QFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCA 121
           QFNP +ESGK+GI SFFNWY+FTFTFA ++SLT++VYVQS+VSW  GL IPA +MFL+C 
Sbjct: 190 QFNPKSESGKRGIDSFFNWYFFTFTFAQILSLTLVVYVQSNVSWTIGLTIPAVLMFLACL 249

Query: 122 MFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPH 181
           +FF G +LY K+K  GSPLA   QV   AIKKR LK  ++PWL L+N+ P    NSKL +
Sbjct: 250 IFFAGDKLYVKIKASGSPLAGIAQVIAVAIKKRGLKPAKQPWLNLYNYYPPKYANSKLKY 309

Query: 182 TGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVAL 241
           T QFR LDKAAI+TPED+++ DG   +PW+L +MQ+VEEVK ++RV+PIW ++ +YY+ +
Sbjct: 310 TDQFRFLDKAAILTPEDKLQPDGKPADPWKLCTMQQVEEVKCIVRVLPIWFASSIYYLTI 369

Query: 242 VQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKE 301
            QQ TY VFQALQSDRR+G+  F IPAA+Y +F M G+T++I +YDR++VP ++R+T  +
Sbjct: 370 TQQMTYPVFQALQSDRRLGSGGFVIPAATYVVFLMTGMTVFIVVYDRVLVPTMRRITGLD 429

Query: 302 GGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRP-VGLEQRRGAISSLSGLWLIPQ 360
            GIT+LQR+  G+  A  +++++G +E++RR+ AL++P +G+  R+G ISS+S +WLIPQ
Sbjct: 430 TGITLLQRIGTGIFFATASLVVAGFVEERRRTFALTKPTLGMAPRKGEISSMSAMWLIPQ 489

Query: 361 LSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGA 420
           LSL G +EAF  I ++EFYYKQFPENMRS  GS+ +VG  +S+YL  FLI+ VHR T+ +
Sbjct: 490 LSLAGVAEAFAAIGQMEFYYKQFPENMRSFAGSIFYVGGGVSSYLGSFLIATVHRTTQNS 549

Query: 421 STGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGD 467
           S G+WL EDLNKGRLD FY+++A +  +NF +FL+ ++WY+YKGS D
Sbjct: 550 SGGNWLAEDLNKGRLDLFYFMIAGILAVNFAYFLVMSRWYRYKGSDD 596

Arabidopsis thaliana (taxid: 3702)

>sp|Q944G5|PTR44_ARATH Probable peptide/nitrate transporter At3g47960 OS=Arabidopsis thaliana GN=At3g47960 PE=1 SV=3

 Score =  572 bits (1475), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 271/467 (58%), Positives = 358/467 (76%), Gaps = 3/467 (0%)

Query: 2   LVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGAD 61
            V+ LTAAI  LHP  CGN+ S  C GP+  Q+ FL  GLG +V+GAGGIRPCNLAFGAD
Sbjct: 148 FVILLTAAIPSLHPVACGNKIS--CEGPSVGQILFLLMGLGFLVVGAGGIRPCNLAFGAD 205

Query: 62  QFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCA 121
           QFNP +ESGK+GI SFFNWY+FTFTFA +ISLT +VY+QS+VSW  GL IP  +MFL+C 
Sbjct: 206 QFNPKSESGKKGINSFFNWYFFTFTFAQIISLTAVVYIQSNVSWTIGLIIPVALMFLACV 265

Query: 122 MFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPH 181
           +FF G RLY KVK  GSPLA   +V  AAIKKR LK  ++PW+ L+NHIP N  N+ L +
Sbjct: 266 IFFAGDRLYVKVKASGSPLAGIARVIAAAIKKRGLKPVKQPWVNLYNHIPSNYANTTLKY 325

Query: 182 TGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVAL 241
           T QFR LDKAAIMTPE+++ SDG+A +PW+L ++Q+VEEVK ++RVIPIW ++ +YY+A+
Sbjct: 326 TDQFRFLDKAAIMTPEEKLNSDGTASDPWKLCTLQQVEEVKCIVRVIPIWFASTIYYLAI 385

Query: 242 VQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKE 301
             Q TY VFQALQSDRR+G+  F+IPAA+Y +F M G+T++I  YDR++VP L+R+T  E
Sbjct: 386 TIQMTYPVFQALQSDRRLGSGGFRIPAATYVVFLMTGMTVFIIFYDRVLVPSLRRVTGLE 445

Query: 302 GGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRP-VGLEQRRGAISSLSGLWLIPQ 360
            GI++LQR+  G   AI ++++SG IE++RR+ AL++P +G+  R G ISS+S LWLIPQ
Sbjct: 446 TGISLLQRIGAGFTFAIMSLLVSGFIEERRRNFALTKPTLGMAPRTGEISSMSALWLIPQ 505

Query: 361 LSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGA 420
           L+L G +EAF  I ++EFYYKQFPENM+S  GS+ +VG  +S+YL  FLIS VHR T  +
Sbjct: 506 LTLAGIAEAFAAIGQMEFYYKQFPENMKSFAGSIFYVGAGVSSYLASFLISTVHRTTAHS 565

Query: 421 STGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGD 467
            +G+WL EDLNK +LDYFY+++  L ++N  +FLL A+WY+YKG  D
Sbjct: 566 PSGNWLAEDLNKAKLDYFYFMLTGLMVVNMAYFLLMARWYRYKGGND 612

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M9V7|PTR8_ARATH Probable peptide/nitrate transporter At1g18880 OS=Arabidopsis thaliana GN=At1g18880 PE=2 SV=1

 Score =  558 bits (1438), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 269/484 (55%), Positives = 355/484 (73%), Gaps = 5/484 (1%)

Query: 2   LVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGAD 61
           + + LTA I  LHP  C  +    C GP+  Q+ FL   + L+VIGAGGIRPCNL FGAD
Sbjct: 106 VAMDLTAVIHPLHPAQCAKEIGSVCNGPSIGQIMFLAGAMVLLVIGAGGIRPCNLPFGAD 165

Query: 62  QFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCA 121
           QF+P T+ GK+GI SFFNWY+FTFTFA M+SLT+IVYVQS+VSW+ GL IPA +M L C 
Sbjct: 166 QFDPKTKEGKRGIESFFNWYFFTFTFAQMVSLTLIVYVQSNVSWSIGLAIPAILMLLGCI 225

Query: 122 MFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPH 181
           +FF GS+LY KVK  GSP+ S  +V V AIKKR LK P  P   L+N+I  +  NSKL H
Sbjct: 226 IFFAGSKLYVKVKASGSPIHSITRVIVVAIKKRRLK-PVGPN-ELYNYIASDFKNSKLGH 283

Query: 182 TGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVAL 241
           T QFR LDK+AI T +D++  DGS ++ W+L SMQ+VEEVK +IRV+P+W SA ++Y+A 
Sbjct: 284 TEQFRFLDKSAIQTQDDKLNKDGSPVDAWKLCSMQQVEEVKCVIRVLPVWLSAALFYLAY 343

Query: 242 VQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKE 301
           +QQ TY +FQ+LQSDRR+G   F+IPA SY +F MLG+TI+IPIYDR++VP L++ T ++
Sbjct: 344 IQQTTYTIFQSLQSDRRLGPGSFQIPAGSYTVFLMLGMTIFIPIYDRVLVPFLRKYTGRD 403

Query: 302 GGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRP-VGLEQRRGAISSLSGLWLIPQ 360
           GGIT LQR+  G+ L I +M++S I+E  RR +AL++P +GL  R+GAISS+SG+WLIPQ
Sbjct: 404 GGITQLQRVGAGLFLCITSMMVSAIVEQYRRKVALTKPTLGLAPRKGAISSMSGMWLIPQ 463

Query: 361 LSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGA 420
           L L+G ++A   + ++EFYYKQFPENMRS  GSL + G  +++YL+ FL+S VH  T+G 
Sbjct: 464 LVLMGIADALAGVGQMEFYYKQFPENMRSFAGSLYYCGIGLASYLSTFLLSAVHDTTEGF 523

Query: 421 STGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAPEVAMEKLNPE 480
           S G WLPEDLNKGRL+YFY+LVA +  LN  +FLL + WY+YK     A +  M+K + E
Sbjct: 524 SGGSWLPEDLNKGRLEYFYFLVAGMMTLNLAYFLLVSHWYRYKDV--VAKDKDMDKTSAE 581

Query: 481 KSPV 484
              V
Sbjct: 582 FDKV 585

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RX77|PTR21_ARATH Nitrate transporter 1.7 OS=Arabidopsis thaliana GN=NRT1.7 PE=1 SV=1

 Score =  446 bits (1148), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 219/467 (46%), Positives = 312/467 (66%), Gaps = 13/467 (2%)

Query: 1   MLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGA 60
           ++ ++LTA+  +LHP  C +QD  +C GP   Q+  L  GL  + +G+GGIRPC++ FG 
Sbjct: 137 LITITLTASFPQLHPASCNSQDPLSCGGPNKLQIGVLLLGLCFLSVGSGGIRPCSIPFGV 196

Query: 61  DQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSC 120
           DQF+  TE G +G+ SFFNWYY TFT  ++I+ TV+VY+Q  VSW  G  IP  +M L+ 
Sbjct: 197 DQFDQRTEEGVKGVASFFNWYYMTFTVVLIITQTVVVYIQDQVSWIIGFSIPTGLMALAV 256

Query: 121 AMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIP--KNCINSK 178
            MFF G + Y  VKPEGS  +   QV VAA KKR LKLP E   T+  + P  K+ + SK
Sbjct: 257 VMFFAGMKRYVYVKPEGSIFSGIAQVIVAARKKRKLKLPAEDDGTVTYYDPAIKSSVLSK 316

Query: 179 LPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYY 238
           L  + QFRCLDKAA++  E  +  +G   + WRL S+Q+VEEVK LIR++PIW++ I+  
Sbjct: 317 LHRSNQFRCLDKAAVVI-EGDLTPEGPPADKWRLCSVQEVEEVKCLIRIVPIWSAGIISL 375

Query: 239 VALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLT 298
            A+  Q T+ V QAL+ DR +G   F+IPA S ++ S+L + I++P YDR+ VP ++R+T
Sbjct: 376 AAMTTQGTFTVSQALKMDRNLG-PKFEIPAGSLSVISLLTIGIFLPFYDRVFVPFMRRIT 434

Query: 299 KKEGGITILQRMAIGMILAIFTMIISGIIEDKR--RSLALSRPVGLEQRRGAISSLSGLW 356
             + GIT+LQR+  G++ AIF+MI++GI+E  R  RS+    P G+       + +S  W
Sbjct: 435 GHKSGITLLQRIGTGIVFAIFSMIVAGIVERMRRIRSINAGDPTGM-------TPMSVFW 487

Query: 357 LIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRF 416
           L PQL L+G  EAF II ++EF+  QFPE+MRSI  SL  + FA S+YL+ FL+++VH+F
Sbjct: 488 LSPQLILMGLCEAFNIIGQIEFFNSQFPEHMRSIANSLFSLSFAGSSYLSSFLVTVVHKF 547

Query: 417 TKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYK 463
           + G    DWL ++LN G+LDYFYYL+A LG++N  +F  CA+ Y+YK
Sbjct: 548 SGGHDRPDWLNKNLNAGKLDYFYYLIAVLGVVNLVYFWYCARGYRYK 594

Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport. Involved in phloem loading and nitrate remobilization from the older leaves to other tissues.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFX9|PTR13_ARATH Nitrate transporter 1.6 OS=Arabidopsis thaliana GN=NRT1.6 PE=1 SV=2

 Score =  394 bits (1012), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 214/484 (44%), Positives = 300/484 (61%), Gaps = 24/484 (4%)

Query: 1   MLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGA 60
           ++ ++LTA + +LHPP C N     C  P   QL  LF GLG + IG+GGIRPC++ FG 
Sbjct: 100 LMTVTLTACLPQLHPPPCNNPHPDECDDPNKLQLGILFLGLGFLSIGSGGIRPCSIPFGV 159

Query: 61  DQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSC 120
           DQF+  TE G +G+ SFFNWYY T T  ++ S TV+VY+Q+ VSW  G  IP  +M  + 
Sbjct: 160 DQFDQRTEQGLKGVASFFNWYYLTLTMVLIFSHTVVVYLQT-VSWVIGFSIPTSLMACAV 218

Query: 121 AMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIP--KNCINSK 178
            +FF+G R Y  VKPEGS  +   +V VAA KKR LK+      T   + P  K  + SK
Sbjct: 219 VLFFVGMRFYVYVKPEGSVFSGIARVIVAARKKRDLKISLVDDGTEEYYEPPVKPGVLSK 278

Query: 179 LPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYY 238
           LP T QF+ LDKAA++   D + S+G   N WRL S+Q+VEEVK LIRV+P+W++ I+  
Sbjct: 279 LPLTDQFKFLDKAAVILDGD-LTSEGVPANKWRLCSIQEVEEVKCLIRVVPVWSAGIISI 337

Query: 239 VALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLT 298
           VA+  Q T++VFQA + DR +G  HF+IPAAS  + S + + IW+PIY+ ++VP L R+ 
Sbjct: 338 VAMTTQATFMVFQATKMDRHMG-PHFEIPAASITVISYITIGIWVPIYEHLLVPFLWRMR 396

Query: 299 KKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLI 358
           K    +T+LQRM IG++ AI +M  +G +E  RR+           R   ++ +S  WL 
Sbjct: 397 KFR--VTLLQRMGIGIVFAILSMFTAGFVEGVRRT-----------RATEMTQMSVFWLA 443

Query: 359 PQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTK 418
             L L+G  E+F  I  +EF+  QFPE+MRSI  SL  + FA +NYL+  L++ VH+ + 
Sbjct: 444 LPLILMGLCESFNFIGLIEFFNSQFPEHMRSIANSLFPLSFAAANYLSSLLVTTVHKVSG 503

Query: 419 GASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAPEVAMEKLN 478
                DWL +DL++G+LDYFYYL+A LG++N  +F  CA  Y+YK          +E  N
Sbjct: 504 TKDHPDWLNKDLDRGKLDYFYYLIAVLGVVNLVYFWYCAHRYQYKAGSQ------IEDFN 557

Query: 479 PEKS 482
            EKS
Sbjct: 558 EEKS 561

Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport. Involved in delivering nitrate for seed development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1

 Score =  363 bits (932), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 187/465 (40%), Positives = 283/465 (60%), Gaps = 13/465 (2%)

Query: 1   MLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGA 60
           M +L+L+A++  L P +C N D+  C  P   Q A  F  L ++ +G GGI+PC  +FGA
Sbjct: 110 MTLLTLSASVPGLKPGNC-NADT--CH-PNSSQTAVFFVALYMIALGTGGIKPCVSSFGA 165

Query: 61  DQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSC 120
           DQF+ N E+ K   +SFFNW+YF+     +I+ TV+V++Q +V W WG G+P   M ++ 
Sbjct: 166 DQFDENDENEKIKKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAV 225

Query: 121 AMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCI--NSK 178
             FF GSR Y   +P GSPL    QV VAA +K  +K+PE+  L       ++ I  + K
Sbjct: 226 CFFFFGSRFYRLQRPGGSPLTRIFQVIVAAFRKISVKVPEDKSLLFETADDESNIKGSRK 285

Query: 179 LPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYY 238
           L HT   +  DKAA+ +  D IK DG  +NPWRL S+ +VEE+K +I ++P+WA+ IV+ 
Sbjct: 286 LVHTDNLKFFDKAAVESQSDSIK-DGE-VNPWRLCSVTQVEELKSIITLLPVWATGIVFA 343

Query: 239 VALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLT 298
               Q  T  V Q    D+ +G  +F+IP+AS ++F  + +  W P+YD+ I+P  ++ T
Sbjct: 344 TVYSQMSTMFVLQGNTMDQHMGK-NFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFT 402

Query: 299 KKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLI 358
           + E G T LQRM IG++++IF MI +G++E  R     +     +Q++     +S  W I
Sbjct: 403 RNERGFTQLQRMGIGLVVSIFAMITAGVLEVVRLDYVKTHN-AYDQKQ---IHMSIFWQI 458

Query: 359 PQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTK 418
           PQ  LIG +E FT I ++EF+Y Q P+ MRS+  +L+    A+ NYL+  L+++V + TK
Sbjct: 459 PQYLLIGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITK 518

Query: 419 GASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYK 463
                 W+P++LN+G LDYF+YL+A L  LNF  +L  +K YKYK
Sbjct: 519 KNGKPGWIPDNLNRGHLDYFFYLLATLSFLNFLVYLWISKRYKYK 563

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1

 Score =  348 bits (894), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 180/465 (38%), Positives = 275/465 (59%), Gaps = 14/465 (3%)

Query: 1   MLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGA 60
           M +L+++A++  L  P C  +   A  G    Q A  F  L L+ +G GGI+PC  +FGA
Sbjct: 111 MTLLTISASVPGL-TPTCSGETCHATAG----QTAITFIALYLIALGTGGIKPCVSSFGA 165

Query: 61  DQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSC 120
           DQF+   E  K+  +SFFNW+YF      MI+ +V+V++Q +V W WGLG+P   M ++ 
Sbjct: 166 DQFDDTDEKEKESKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAV 225

Query: 121 AMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCI--NSK 178
             FF GS  Y   KP GSPL   +QV VA+ +K  +K+PE+  L   N   ++ I  + K
Sbjct: 226 VFFFAGSNFYRLQKPGGSPLTRMLQVIVASCRKSKVKIPEDESLLYENQDAESSIIGSRK 285

Query: 179 LPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYY 238
           L HT      DKAA+ T  D   +  S+   W+L ++ +VEE+K LIR++PIWA+ IV+ 
Sbjct: 286 LEHTKILTFFDKAAVETESDNKGAAKSS--SWKLCTVTQVEELKALIRLLPIWATGIVFA 343

Query: 239 VALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLT 298
               Q  T  V Q    D+ +G  +FKIP+AS ++F  L +  W P+YD++IVP  ++ T
Sbjct: 344 SVYSQMGTVFVLQGNTLDQHMG-PNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYT 402

Query: 299 KKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLI 358
             E G T LQR+ IG++++IF+M+ +GI+E  R +   +  +  E+       ++  W +
Sbjct: 403 GHERGFTQLQRIGIGLVISIFSMVSAGILEVARLNYVQTHNLYNEETI----PMTIFWQV 458

Query: 359 PQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTK 418
           PQ  L+G +E FT I ++EF+Y Q P+ MRS+  +L+    A  NYL+ FL+++V + T+
Sbjct: 459 PQYFLVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTR 518

Query: 419 GASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYK 463
                 W+ ++LN G LDYF++L+A L  LNF  +L  AKWY YK
Sbjct: 519 SGGRPGWIAKNLNNGHLDYFFWLLAGLSFLNFLVYLWIAKWYTYK 563

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SX20|PTR18_ARATH Probable nitrite transporter At1g68570 OS=Arabidopsis thaliana GN=At1g68570 PE=2 SV=1

 Score =  343 bits (879), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 191/466 (40%), Positives = 284/466 (60%), Gaps = 9/466 (1%)

Query: 1   MLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGA 60
           M +L+++A I  L PP C  ++   C      QL+ L+  L L  +G+GGIRPC +AFGA
Sbjct: 109 MTLLTISAIIPTLRPPPCKGEE--VCVVADTAQLSILYVALLLGALGSGGIRPCVVAFGA 166

Query: 61  DQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSC 120
           DQF+ +  +      ++FNWYYF    A+++++TV+V++Q +V W  GLGIP   MFLS 
Sbjct: 167 DQFDESDPNQTTKTWNYFNWYYFCMGAAVLLAVTVLVWIQDNVGWGLGLGIPTVAMFLSV 226

Query: 121 AMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCIN--SK 178
             F  G +LY  + P GSP    +QV VAA +KR L++  +P L   N      I+   K
Sbjct: 227 IAFVGGFQLYRHLVPAGSPFTRLIQVGVAAFRKRKLRMVSDPSLLYFNDEIDAPISLGGK 286

Query: 179 LPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYY 238
           L HT     LDKAAI+T ED +K  G   N WRLS++ +VEE+K +IR+ PI AS I+  
Sbjct: 287 LTHTKHMSFLDKAAIVTEEDNLKP-GQIPNHWRLSTVHRVEELKSVIRMGPIGASGILLI 345

Query: 239 VALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLT 298
            A  QQ T+ + QA   +R + N+ F+IPA S ++F+ + +   I  YDR+ V   ++ T
Sbjct: 346 TAYAQQGTFSLQQAKTMNRHLTNS-FQIPAGSMSVFTTVAMLTTIIFYDRVFVKVARKFT 404

Query: 299 KKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLI 358
             E GIT L RM IG +++I   +++G +E KR+S+A+    GL  +   I  +S LWLI
Sbjct: 405 GLERGITFLHRMGIGFVISIIATLVAGFVEVKRKSVAIEH--GLLDKPHTIVPISFLWLI 462

Query: 359 PQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTK 418
           PQ  L G +EAF  I  +EF+Y Q PE+MRS   +L ++  +I NY++  L+++VH+F+ 
Sbjct: 463 PQYGLHGVAEAFMSIGHLEFFYDQAPESMRSTATALFWMAISIGNYVSTLLVTLVHKFSA 522

Query: 419 GASTGDWLPE-DLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYK 463
                +WLP+ +LN+GRL+YFY+L+  L  +N  ++L CAK Y YK
Sbjct: 523 KPDGSNWLPDNNLNRGRLEYFYWLITVLQAVNLVYYLWCAKIYTYK 568

May act as an efflux-type nitrite transporter. Not regulated by the PII protein involved in the regulation of nitrite uptake into higher plant chloroplasts.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAR9|PTR20_ARATH Putative peptide/nitrate transporter At1g69860 OS=Arabidopsis thaliana GN=At1g69860 PE=5 SV=1

 Score =  335 bits (858), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 191/467 (40%), Positives = 299/467 (64%), Gaps = 23/467 (4%)

Query: 1   MLVLSLTAAISKLHPPDC-GNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFG 59
           MLVL+ T+ +  L PP C  +Q +G C   +  QL  L +GL L+ +G GGIR C++ F 
Sbjct: 104 MLVLTFTSLVPNLRPPPCTADQITGQCIPYSYSQLYVLLSGLFLLSVGTGGIRSCSVPFS 163

Query: 60  ADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLS 119
            DQF+ +TE G++G  SFF+WYY T T   ++S+T+++YVQ+++SW  G  IP  + F +
Sbjct: 164 LDQFDDSTEEGREGSRSFFSWYYTTHTIVQLVSMTLVLYVQNNISWGIGFAIPTVLNFFA 223

Query: 120 CAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINS-K 178
             + F+G+R Y  VKPEGS  +   +V VAA KKR  +      +  H  + +  + S K
Sbjct: 224 LLLLFVGTRYYVFVKPEGSVFSGVFKVLVAAYKKRKARFTSG--IDYHQPLLETDLQSNK 281

Query: 179 LPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYY 238
           L  T QFR L+KA I+   D+  ++      WR  +++++E++K +I +IPI+AS+I+ +
Sbjct: 282 LVLTDQFRFLNKAVIVMNNDEAGNE-----EWRTCTVRQIEDIKSIISIIPIFASSIIGF 336

Query: 239 VALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLT 298
           +A+ QQQT+ V QAL+ D +   T + IP AS  + S+L + IW+P Y+ ++V  ++ +T
Sbjct: 337 LAMNQQQTFTVSQALKMDLQFPGTSYLIPPASITVISLLNIGIWLPFYETVLVRHIENIT 396

Query: 299 KKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLI 358
           K+ GGI++LQ++ IG I +I TM+ISGI+E KRR L+L+   G++        +S  WL 
Sbjct: 397 KQNGGISLLQKVGIGNIFSISTMLISGIVERKRRDLSLN---GVK--------MSVFWLT 445

Query: 359 PQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFT- 417
           PQ  L+GF + FTI+   EF+ KQ P NMRSIG SL ++G ++++YL+  ++S+VH  T 
Sbjct: 446 PQQVLMGFYQVFTIVGLTEFFNKQVPINMRSIGNSLLYLGLSLASYLSSAMVSIVHSVTA 505

Query: 418 KGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKG 464
           +G  +  WL +D++K +LD FYY +AAL  LNF FF  CA+ Y+Y+ 
Sbjct: 506 RGGQS--WLTDDIDKSKLDCFYYFIAALSTLNFIFFFWCARRYRYRN 550

Arabidopsis thaliana (taxid: 3702)

>sp|P46032|PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1

 Score =  329 bits (844), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 174/465 (37%), Positives = 268/465 (57%), Gaps = 12/465 (2%)

Query: 1   MLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGA 60
           M  L+L+A++  L P +C       CP  TP Q A  F GL L+ +G GGI+PC  +FGA
Sbjct: 127 MSALTLSASVPALKPAECIGD---FCPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFGA 183

Query: 61  DQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSC 120
           DQF+      +    SFFNW+YF+     ++S +++V++Q +  W  G GIP   M L+ 
Sbjct: 184 DQFDDTDSRERVRKASFFNWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAI 243

Query: 121 AMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCI--NSK 178
           A FF G+ LY   KP GSP+    QV VA+ +K  +K+PE+  L        + I  + K
Sbjct: 244 ASFFFGTPLYRFQKPGGSPITRISQVVVASFRKSSVKVPEDATLLYETQDKNSAIAGSRK 303

Query: 179 LPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYY 238
           + HT   + LDKAA+++ E+    D S  N WRL ++ +VEE+K+LIR+ PIWAS I++ 
Sbjct: 304 IEHTDDCQYLDKAAVISEEESKSGDYS--NSWRLCTVTQVEELKILIRMFPIWASGIIFS 361

Query: 239 VALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLT 298
               Q  T  V Q    + ++G+  F++P A+   F    + IW+P+YDR IVP  ++ T
Sbjct: 362 AVYAQMSTMFVQQGRAMNCKIGS--FQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFT 419

Query: 299 KKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLI 358
             + G T +QRM IG+ +++  M  + I+E  R  L ++  +GL +  GA   +S LW I
Sbjct: 420 GVDKGFTEIQRMGIGLFVSVLCMAAAAIVEIIR--LHMANDLGLVE-SGAPVPISVLWQI 476

Query: 359 PQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTK 418
           PQ  ++G +E F  I ++EF+Y Q P+ MRS+  +LA +  A+ NYL+  ++++V  FT 
Sbjct: 477 PQYFILGAAEVFYFIGQLEFFYDQSPDAMRSLCSALALLTNALGNYLSSLILTLVTYFTT 536

Query: 419 GASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYK 463
                 W+ ++LN G LDYF++L+A L L+N   +   A  YK K
Sbjct: 537 RNGQEGWISDNLNSGHLDYFFWLLAGLSLVNMAVYFFSAARYKQK 581

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity, low capacity transporter. Can also transport histidine.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	484
296453136	588	nitrate transporter [Citrus trifoliata]	1.0	0.823	0.975	0.0
225456647	586	PREDICTED: probable peptide/nitrate tran	0.993	0.820	0.711	0.0
224119132	586	predicted protein [Populus trichocarpa]	0.966	0.798	0.735	0.0
225456645	586	PREDICTED: probable peptide/nitrate tran	0.993	0.820	0.697	0.0
297734038	1053	unnamed protein product [Vitis vinifera]	0.973	0.447	0.690	0.0
449441051	589	PREDICTED: probable peptide/nitrate tran	0.991	0.814	0.685	0.0
224059970	596	predicted protein [Populus trichocarpa]	0.981	0.796	0.663	0.0
225452684	585	PREDICTED: probable peptide/nitrate tran	0.991	0.820	0.668	0.0
359491749	577	PREDICTED: probable peptide/nitrate tran	0.958	0.804	0.668	0.0
255552802	589	nitrate transporter, putative [Ricinus c	0.993	0.816	0.631	0.0

>gi|296453136|gb|ADH21397.1| nitrate transporter [Citrus trifoliata]

 Score =  979 bits (2531), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/484 (97%), Positives = 478/484 (98%)

Query: 1   MLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGA 60
           MLVL+LTAAISKLHPPDCGNQDSGAC GPTPWQLAFLF GLGLMVIGAGGIRPCNLAFGA
Sbjct: 105 MLVLTLTAAISKLHPPDCGNQDSGACSGPTPWQLAFLFIGLGLMVIGAGGIRPCNLAFGA 164

Query: 61  DQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSC 120
           DQFNPNTESGK+GITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSC
Sbjct: 165 DQFNPNTESGKKGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSC 224

Query: 121 AMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLP 180
           AMFFLGSRLY KVKP+GSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLP
Sbjct: 225 AMFFLGSRLYVKVKPDGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLP 284

Query: 181 HTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVA 240
           HTGQFRCL+KAAIMTPEDQIKSDGSAINPWRLSS QKVEEVKVLIRVIPIWASAIVYYVA
Sbjct: 285 HTGQFRCLEKAAIMTPEDQIKSDGSAINPWRLSSKQKVEEVKVLIRVIPIWASAIVYYVA 344

Query: 241 LVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKK 300
            VQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKK
Sbjct: 345 SVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKK 404

Query: 301 EGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQ 360
           EGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQ
Sbjct: 405 EGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQ 464

Query: 361 LSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGA 420
           LSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSL FVGFAISNYL+GFLISMVHRFTKGA
Sbjct: 465 LSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLTFVGFAISNYLSGFLISMVHRFTKGA 524

Query: 421 STGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAPEVAMEKLNPE 480
           STGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAPEVAMEK+NPE
Sbjct: 525 STGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAPEVAMEKVNPE 584

Query: 481 KSPV 484
           KSPV
Sbjct: 585 KSPV 588

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456647|ref|XP_002270812.1| PREDICTED: probable peptide/nitrate transporter At5g62680 [Vitis vinifera]

 Score =  744 bits (1920), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/482 (71%), Positives = 409/482 (84%), Gaps = 1/482 (0%)

Query: 1   MLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGA 60
           MLV++LTAA+ K+HPP CG  D+G C GPT  Q+AFL +G GL+VIGA GIRPCNLAFGA
Sbjct: 102 MLVITLTAAVQKMHPPHCGTTDTGTCIGPTAGQMAFLLSGFGLLVIGAAGIRPCNLAFGA 161

Query: 61  DQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSC 120
           DQFNP TESGK+GI+SFFNWYYFT+TFAMM+SLTVIVYVQSDVSW+ GL IP  +M LSC
Sbjct: 162 DQFNPETESGKRGISSFFNWYYFTYTFAMMVSLTVIVYVQSDVSWSLGLAIPTLLMLLSC 221

Query: 121 AMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLP 180
           A+FF+G+R+Y KVKPEGSPL +  QV VAA+KKR L+LP +PWL+L NHIP N INSKLP
Sbjct: 222 ALFFMGTRIYVKVKPEGSPLKNVAQVIVAAVKKRRLELPGQPWLSLFNHIPANSINSKLP 281

Query: 181 HTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVA 240
           HT QFR L K AI+TPE QI SDGSA NPWRLSSMQKVEEVK +IRVIPIWA+ I+YYVA
Sbjct: 282 HTDQFRFLSKGAILTPEVQINSDGSAANPWRLSSMQKVEEVKCVIRVIPIWAAGIIYYVA 341

Query: 241 LVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKK 300
           LVQQ TYVVFQALQSDRR+G+T FKIPAASY +F+ML LTIWIPIYD+IIVP L+RLT K
Sbjct: 342 LVQQSTYVVFQALQSDRRLGSTGFKIPAASYTVFTMLSLTIWIPIYDQIIVPLLRRLTGK 401

Query: 301 EGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRP-VGLEQRRGAISSLSGLWLIP 359
           E GIT+LQ+M IGM+LA+ TMI+S ++E++RR+LAL++  VG+E RRGAISSLSG+WL+P
Sbjct: 402 EVGITLLQKMGIGMVLAVITMILSALVEERRRTLALTKATVGIEARRGAISSLSGMWLVP 461

Query: 360 QLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKG 419
           QL+LIG SE  TII +VEF+YKQFPENMRS  G+  F G A SNYL+ FL+S+VH+ T G
Sbjct: 462 QLTLIGISEGLTIIGQVEFFYKQFPENMRSFAGAFLFCGIAFSNYLSSFLVSIVHQSTGG 521

Query: 420 ASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAPEVAMEKLNP 479
            +TG+WLPEDLNKGRLDYFYYLVAALG++N  +FL CAKWYKYK S +   EV++EK+ P
Sbjct: 522 TATGNWLPEDLNKGRLDYFYYLVAALGMVNLLYFLACAKWYKYKDSEESPLEVSLEKMQP 581

Query: 480 EK 481
           +K
Sbjct: 582 QK 583

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119132|ref|XP_002317993.1| predicted protein [Populus trichocarpa] gi|222858666|gb|EEE96213.1| predicted protein [Populus trichocarpa]

 Score =  719 bits (1857), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/472 (73%), Positives = 409/472 (86%), Gaps = 4/472 (0%)

Query: 1   MLVLSLTAAISKLHPPDC--GNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAF 58
           M+V++LTAAISKLHPP C  G QD+ ACP  TPWQ+ FL +GLGL+VIG GGIRPCNLAF
Sbjct: 101 MVVITLTAAISKLHPPQCASGTQDTAACPALTPWQMTFLLSGLGLLVIGGGGIRPCNLAF 160

Query: 59  GADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFL 118
           GADQFNP TESG++GITSFFNWYYFTFTFAMMISLT++VYVQSD++WAWGL IPAF+MF 
Sbjct: 161 GADQFNPQTESGRKGITSFFNWYYFTFTFAMMISLTIVVYVQSDINWAWGLAIPAFLMFF 220

Query: 119 SCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSK 178
           SC +FF GSR+Y KVKP+GSPL S VQV VAAIKKR L+LPE+PWL+L NHIP   INS 
Sbjct: 221 SCVLFFAGSRIYVKVKPDGSPLTSVVQVIVAAIKKRKLELPEQPWLSLFNHIPARSINSN 280

Query: 179 LPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYY 238
           LP+T QFR LDKAAI+T EDQI S+GS   PWRL S+Q+VEEVK L+RVIPIWASA++YY
Sbjct: 281 LPYTDQFRFLDKAAILTTEDQIMSNGSTATPWRLCSLQQVEEVKCLLRVIPIWASALLYY 340

Query: 239 VALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLT 298
           + L+QQQTYVVFQALQS+R +GNT+FKIPAASYAIFSMLGLTIWIPIYDR+IVP L + T
Sbjct: 341 IGLIQQQTYVVFQALQSNRGLGNTNFKIPAASYAIFSMLGLTIWIPIYDRLIVPWLAKHT 400

Query: 299 KKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA-ISSLSGLWL 357
           KKEGGITILQ+M +GM L I TM+ISGI+E++RR+LA+S P+G++ R    +SSLS LWL
Sbjct: 401 KKEGGITILQKMGVGMALGIVTMLISGIVEERRRALAISSPIGVDSRSNVNVSSLSALWL 460

Query: 358 IPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFT 417
            PQL LIG SEAFTIIA++E YYKQFPENMRSIGGSL+FVG A+S+YL+ FLISMVH+ T
Sbjct: 461 APQLILIGISEAFTIIAQIELYYKQFPENMRSIGGSLSFVGVAVSSYLSAFLISMVHQIT 520

Query: 418 KGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGA 469
           K ++ GDWLPEDLNKGRLD FYYLVAALG++N G+F++CAKWYKYKG+ DG 
Sbjct: 521 KKSACGDWLPEDLNKGRLDLFYYLVAALGVINMGYFIVCAKWYKYKGN-DGT 571

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456645|ref|XP_002266777.1| PREDICTED: probable peptide/nitrate transporter At5g62680-like [Vitis vinifera]

 Score =  717 bits (1852), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/482 (69%), Positives = 411/482 (85%), Gaps = 1/482 (0%)

Query: 1   MLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGA 60
           MLV++LTA ISKLHPP C  + +G C GPT WQ+AFL  G GL+VIGA GIRPCNLAFGA
Sbjct: 102 MLVITLTALISKLHPPHCEIEQTGTCIGPTSWQIAFLLLGFGLLVIGASGIRPCNLAFGA 161

Query: 61  DQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSC 120
           DQFNP TESGK+G++SFFNW+YFT T AMMISLT+++YVQSDVSWA GL IP F+M L+C
Sbjct: 162 DQFNPITESGKRGLSSFFNWWYFTGTVAMMISLTLVIYVQSDVSWALGLAIPTFLMLLAC 221

Query: 121 AMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLP 180
            +FF+G+R+Y K++P+GSPL S VQV VAA +KR LKLPE+PWLTL +H+P N INSKLP
Sbjct: 222 VLFFMGTRIYVKLEPKGSPLKSVVQVIVAAARKRQLKLPEQPWLTLFSHVPSNSINSKLP 281

Query: 181 HTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVA 240
           +T QFR LDK AI+TPEDQI S+G A +PWRLSS+Q+VEEVK L+RVIPIWASAI+YYVA
Sbjct: 282 YTDQFRFLDKGAIITPEDQINSEGLAADPWRLSSIQQVEEVKCLMRVIPIWASAIIYYVA 341

Query: 241 LVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKK 300
           L QQQTY VFQ+LQSDR +G+++FKIPAASY+IFSMLGL IWIPIYDRI+VP LQR T K
Sbjct: 342 LAQQQTYTVFQSLQSDRHLGHSNFKIPAASYSIFSMLGLIIWIPIYDRIMVPLLQRFTGK 401

Query: 301 EGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRP-VGLEQRRGAISSLSGLWLIP 359
           EGGIT+LQ+M +GM L+I TM++S  +E +RR+LAL  P + ++ RRGAISS+SGLW IP
Sbjct: 402 EGGITVLQKMGVGMFLSIVTMLVSAFVEHQRRTLALCEPTLRIDPRRGAISSMSGLWFIP 461

Query: 360 QLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKG 419
           QL+L+G SEAFT+IA+VEF+YKQFPE+MRS+GGS +F+G A+S+YL+ FL+S VHR T G
Sbjct: 462 QLTLVGVSEAFTVIAQVEFFYKQFPESMRSVGGSFSFLGVAVSSYLSSFLVSTVHRMTAG 521

Query: 420 ASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAPEVAMEKLNP 479
           A++G+WLPEDLNKGRLDYFYYLVAALG++N G+FLLCAKWYKYKGS     EV ME++  
Sbjct: 522 AASGNWLPEDLNKGRLDYFYYLVAALGVINLGYFLLCAKWYKYKGSACSTQEVPMERVES 581

Query: 480 EK 481
           EK
Sbjct: 582 EK 583

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734038|emb|CBI15285.3| unnamed protein product [Vitis vinifera]

 Score =  703 bits (1815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/481 (69%), Positives = 404/481 (83%), Gaps = 10/481 (2%)

Query: 1   MLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGA 60
           MLV++LTA ISKLHPP C  + +G C GPT WQ+AFL  G GL+VIGA GIRPCNLAFGA
Sbjct: 145 MLVITLTALISKLHPPHCEIEQTGTCIGPTSWQIAFLLLGFGLLVIGASGIRPCNLAFGA 204

Query: 61  DQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSC 120
           DQFNP TESGK+G++SFFNW+YFT T AMMISLT+++YVQSDVSWA GL IP F+M L+C
Sbjct: 205 DQFNPITESGKRGLSSFFNWWYFTGTVAMMISLTLVIYVQSDVSWALGLAIPTFLMLLAC 264

Query: 121 AMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLP 180
            +FF+G+R+Y K++P+GSPL S VQV VAA +KR LKLPE+PWLTL +H+P N INSKLP
Sbjct: 265 VLFFMGTRIYVKLEPKGSPLKSVVQVIVAAARKRQLKLPEQPWLTLFSHVPSNSINSKLP 324

Query: 181 HTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVA 240
           +T QFR LDK AI+TPEDQI S+G A +PWRLSS+Q+VEEVK L+RVIPIWASAI+YYVA
Sbjct: 325 YTDQFRFLDKGAIITPEDQINSEGLAADPWRLSSIQQVEEVKCLMRVIPIWASAIIYYVA 384

Query: 241 LVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKK 300
           L QQQTY VFQ+LQSDR +G+++FKIPAASY+IFSMLGL IWIPIYDRI+VP LQR T K
Sbjct: 385 LAQQQTYTVFQSLQSDRHLGHSNFKIPAASYSIFSMLGLIIWIPIYDRIMVPLLQRFTGK 444

Query: 301 EGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQ 360
           EGGIT+LQ+M +GM L+I TM++S  +E +RR+LAL           AISS+SGLW IPQ
Sbjct: 445 EGGITVLQKMGVGMFLSIVTMLVSAFVEHQRRTLALC----------AISSMSGLWFIPQ 494

Query: 361 LSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGA 420
           L+L+G SEAFT+IA+VEF+YKQFPE+MRS+GGS +F+G A+S+YL+ FL+S VHR T GA
Sbjct: 495 LTLVGVSEAFTVIAQVEFFYKQFPESMRSVGGSFSFLGVAVSSYLSSFLVSTVHRMTAGA 554

Query: 421 STGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAPEVAMEKLNPE 480
           ++G+WLPEDLNKGRLDYFYYLVAALG++N G+FLLCAKWYKYKGS     EV ME++  E
Sbjct: 555 ASGNWLPEDLNKGRLDYFYYLVAALGVINLGYFLLCAKWYKYKGSACSTQEVPMERVESE 614

Query: 481 K 481
           K
Sbjct: 615 K 615

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441051|ref|XP_004138297.1| PREDICTED: probable peptide/nitrate transporter At5g62680-like [Cucumis sativus] gi|449477593|ref|XP_004155066.1| PREDICTED: probable peptide/nitrate transporter At5g62680-like [Cucumis sativus]

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/490 (68%), Positives = 404/490 (82%), Gaps = 10/490 (2%)

Query: 1   MLVLSLTAAISKLHPPDCGNQDSG-ACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFG 59
           M+VL+LTA I KLHPPDCG   +G AC  PT WQ+AFL  GLGL+VIGAGGIRPCNLAFG
Sbjct: 103 MVVLTLTATIEKLHPPDCGKGSAGGACLEPTSWQIAFLLFGLGLLVIGAGGIRPCNLAFG 162

Query: 60  ADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLS 119
           ADQFNPNT SGK GI SFFNWYYFTFTFAMMISLT+IVYVQ++VSWAWGL IPAF+MFLS
Sbjct: 163 ADQFNPNTASGKLGINSFFNWYYFTFTFAMMISLTIIVYVQTEVSWAWGLAIPAFLMFLS 222

Query: 120 CAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKL 179
           CA+FF+GS +Y K++P+GSP  S ++V +AA+KKR L LP++ W +L NHIP N INSKL
Sbjct: 223 CALFFMGSWIYVKLEPDGSPFTSVMRVLMAALKKRQLPLPDQQWPSLFNHIPSNSINSKL 282

Query: 180 PHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYV 239
           P+T QF   DKAAI+T ED+ KSDGSA +PW L S Q+VEEVK L+RVIPIW +AI+Y+V
Sbjct: 283 PYTNQFSFFDKAAIITSEDKFKSDGSAADPWTLCSTQQVEEVKCLVRVIPIWGAAIIYHV 342

Query: 240 ALVQQQTYVVFQALQSDRRV--GNTH-FKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQR 296
           A  QQQTY VFQALQSDRR+  GNTH FKIPAASY IF+M+GLTIWIP YDRI+VP L+R
Sbjct: 343 ATTQQQTYAVFQALQSDRRLFFGNTHYFKIPAASYTIFTMIGLTIWIPFYDRILVPSLRR 402

Query: 297 LTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQ-RRGAISSLSGL 355
           +T +EGGIT+LQ+M  GM +AI TM IS ++E KRR+LAL++P+  E  RRG+ISS+S L
Sbjct: 403 ITAREGGITLLQKMGFGMGIAIITMFISALVEQKRRNLALTQPLCEETGRRGSISSMSAL 462

Query: 356 WLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR 415
           WL+PQL+LIG SEAFT+IA+VEFYYK+FPENMRSIGGSL+FVG A+SNYL+GF++++VHR
Sbjct: 463 WLVPQLTLIGLSEAFTVIAQVEFYYKEFPENMRSIGGSLSFVGLALSNYLSGFMVTVVHR 522

Query: 416 FTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGD-GAPEVAM 474
            T     G WLPEDLNKGRLDYFY+LV+ L  +N G+FLLC+KWYKYKGSG  G  E+  
Sbjct: 523 LT----AGKWLPEDLNKGRLDYFYFLVSGLEAVNLGYFLLCSKWYKYKGSGSHGVDEMDF 578

Query: 475 EKLNPEKSPV 484
            K   EK+ V
Sbjct: 579 GKTEFEKTVV 588

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059970|ref|XP_002300021.1| predicted protein [Populus trichocarpa] gi|222847279|gb|EEE84826.1| predicted protein [Populus trichocarpa]

 Score =  684 bits (1765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/478 (66%), Positives = 392/478 (82%), Gaps = 3/478 (0%)

Query: 1   MLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGA 60
           M+VL LTAAIS +HPP C       C GPT WQLAFL +G   +VIGAGGIRPCNLAFGA
Sbjct: 121 MVVLMLTAAISTMHPPKCA--PGAVCAGPTSWQLAFLLSGFAFLVIGAGGIRPCNLAFGA 178

Query: 61  DQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSC 120
           DQFNPNTESGK+GITSFFNWYYFTFTFA+MIS+T IVYVQS+VSWA GLGIPAF+M LSC
Sbjct: 179 DQFNPNTESGKRGITSFFNWYYFTFTFAVMISVTGIVYVQSNVSWAIGLGIPAFLMLLSC 238

Query: 121 AMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLP 180
            MFF+G+R+Y  VKP+GSP+ S VQV VAA KKR LK+P+   ++L N+IP   INSKLP
Sbjct: 239 VMFFVGTRIYVIVKPQGSPITSIVQVLVAATKKRGLKVPDNSAMSLFNYIPAKSINSKLP 298

Query: 181 HTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVA 240
            T QFRCLDKAAI+T E+QI  DG+A NPW+L S+Q+VEEVK L+R+IP+W+++I+Y + 
Sbjct: 299 STEQFRCLDKAAIITDENQINLDGTAANPWKLCSVQQVEEVKCLLRIIPVWSTSILYQIP 358

Query: 241 LVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKK 300
           L+QQQTY VFQALQ DRR+G+T FK+PAA+Y IF+ML LTIWIP+YDRIIVP LQRLT K
Sbjct: 359 LLQQQTYAVFQALQMDRRLGSTSFKVPAATYIIFTMLTLTIWIPLYDRIIVPFLQRLTGK 418

Query: 301 EGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSR-PVGLEQRRGAISSLSGLWLIP 359
           +GGIT+LQRM IGMILAI   ++SG++E+ RR +AL+R P+G   + G+ISS+SG+WLIP
Sbjct: 419 DGGITLLQRMGIGMILAILCTVVSGLVEENRRHIALTRPPLGQTNKGGSISSMSGMWLIP 478

Query: 360 QLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKG 419
           QL+L G SE F  IA++EFYYKQFPENMRSI GS  F G A++NYL+G L+S+VH+ T G
Sbjct: 479 QLALSGLSEGFNYIAQIEFYYKQFPENMRSIAGSAFFAGGALANYLSGVLVSIVHQITSG 538

Query: 420 ASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAPEVAMEKL 477
           + TGDWL +DLNKG+LDYFYY++A LG+LNFG+FLLCAKWY+YK + D    +A + +
Sbjct: 539 SKTGDWLDDDLNKGKLDYFYYVIAGLGILNFGYFLLCAKWYRYKDADDSTVGMATKGI 596

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452684|ref|XP_002276806.1| PREDICTED: probable peptide/nitrate transporter At5g62680 [Vitis vinifera] gi|296087781|emb|CBI35037.3| unnamed protein product [Vitis vinifera]

 Score =  677 bits (1747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/486 (66%), Positives = 391/486 (80%), Gaps = 6/486 (1%)

Query: 1   MLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGA 60
           M V+ LTAAISKLHPP CG +++  C GPT  QLAFL TG GL++IGAGGIRPCNLAFGA
Sbjct: 104 MTVIMLTAAISKLHPPHCGTKETELCRGPTTSQLAFLLTGFGLLIIGAGGIRPCNLAFGA 163

Query: 61  DQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSC 120
           DQFNP TESGK+GI SFFNWYYFTFTFA+MIS T IVYVQS+VSWA GLGIP+ +MF+SC
Sbjct: 164 DQFNPATESGKRGINSFFNWYYFTFTFAVMISGTFIVYVQSNVSWALGLGIPSCLMFVSC 223

Query: 121 AMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLP 180
            +FF GSR+Y KVKP GSPL    QV VAA KKR+ KLP+ P L+L +H+P N +NSKLP
Sbjct: 224 VLFFAGSRIYVKVKPRGSPLTGVAQVLVAASKKRYFKLPDHPELSLFSHVPTNYMNSKLP 283

Query: 181 HTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVA 240
           HT QFR LDK+AI+T EDQI +DGSA NPWRL SMQ+VEEVK L+RVIPIWAS+I+Y+VA
Sbjct: 284 HTDQFRFLDKSAIITMEDQINTDGSASNPWRLCSMQQVEEVKCLMRVIPIWASSIIYHVA 343

Query: 241 LVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKK 300
           +VQQ TY V QALQSDR +G+  F++PAASY+IFSML LTIWIPIYDRI++P L +LT K
Sbjct: 344 IVQQHTYAVLQALQSDRHLGS--FEVPAASYSIFSMLSLTIWIPIYDRIVIPFLHKLTGK 401

Query: 301 EGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRP-VGLEQRRGAISSLSGLWLIP 359
           E GIT+LQRM  G++L++ TM++S +IE++RR+ A +RP +G   + GAISS+S  WLIP
Sbjct: 402 EDGITLLQRMGTGIVLSVATMLVSAVIEEQRRTFARTRPTIGTAPKGGAISSMSASWLIP 461

Query: 360 QLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFT-K 418
           QL L G SEAF  I ++EFYYKQFPENMRSI GS  F G A SNYL+GFL+S+VH+ T  
Sbjct: 462 QLILAGLSEAFNSIGQIEFYYKQFPENMRSIAGSFFFCGIAGSNYLSGFLVSVVHQITLN 521

Query: 419 GASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAPEVAMEKLN 478
           GA  GDWLPEDLNKG+LD FYY++AALG +NF +FL+C+KWY+YKG GD   EVAME   
Sbjct: 522 GARGGDWLPEDLNKGKLDCFYYMIAALGAVNFAYFLVCSKWYRYKG-GDRV-EVAMETKG 579

Query: 479 PEKSPV 484
             K  V
Sbjct: 580 SRKHVV 585

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491749|ref|XP_002270558.2| PREDICTED: probable peptide/nitrate transporter At5g62680-like [Vitis vinifera]

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/471 (66%), Positives = 384/471 (81%), Gaps = 7/471 (1%)

Query: 1   MLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGA 60
           +LV++LTAAI  LHPP+CG   +  C G T WQ+AFL TG GL+VIGAGGIRPCNLAFGA
Sbjct: 113 LLVIALTAAIPNLHPPECGK--ASRCIGATAWQMAFLLTGFGLLVIGAGGIRPCNLAFGA 170

Query: 61  DQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSC 120
           DQFNP TESGK+GI SFFNWY+FT TFA M+SLT IVYVQS VSW  GLGIPA +M LSC
Sbjct: 171 DQFNPKTESGKRGIDSFFNWYFFTLTFAQMVSLTAIVYVQSKVSWGIGLGIPALLMLLSC 230

Query: 121 AMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLP 180
            +FF+G+++Y KVKP GSP+ S  QV V A+KKR LKLPE+PWL+L ++IP N INSKLP
Sbjct: 231 VVFFMGTKIYVKVKPTGSPMTSVAQVIVVAVKKRRLKLPEQPWLSLFSYIPPNSINSKLP 290

Query: 181 HTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVA 240
           +T QFR LDKAA+++PEDQ+  DGSA  PWRL SMQ+VEEVK ++RVIPIW+SAI+Y+ A
Sbjct: 291 YTDQFRFLDKAAVLSPEDQLNPDGSAAYPWRLCSMQQVEEVKCIMRVIPIWSSAIIYHCA 350

Query: 241 LVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKK 300
           +VQQ TY VFQALQS+R VGN+ F+IPAASY +FSML LTIW+PIYDRI+VP L+R+T K
Sbjct: 351 IVQQHTYAVFQALQSNRYVGNSKFQIPAASYTVFSMLSLTIWVPIYDRIVVPFLRRITGK 410

Query: 301 EGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRP-VGLEQRRGAISSLSGLWLIP 359
           E GITILQR+ IG+ L++ T ++S ++E+ RR    +RP +G+  RRG ISS+SG WLIP
Sbjct: 411 EAGITILQRIGIGIFLSVLTSLVSALVEEWRR----TRPIIGVYPRRGGISSMSGFWLIP 466

Query: 360 QLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKG 419
           QL+L G +EAFT I +VEFYYKQFPENMRSI GS  F G A S+Y++G L+S+VHR T G
Sbjct: 467 QLTLAGLAEAFTAIGQVEFYYKQFPENMRSIAGSFFFCGMAASSYVSGLLVSIVHRTTAG 526

Query: 420 ASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAP 470
           A TG+WLPEDLNKGRLDYFYYLVA+LG++N G+FL+CAKWY YKGS    P
Sbjct: 527 AKTGNWLPEDLNKGRLDYFYYLVASLGVINLGYFLVCAKWYTYKGSYQQHP 577

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552802|ref|XP_002517444.1| nitrate transporter, putative [Ricinus communis] gi|223543455|gb|EEF44986.1| nitrate transporter, putative [Ricinus communis]

 Score =  657 bits (1696), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/483 (63%), Positives = 388/483 (80%), Gaps = 2/483 (0%)

Query: 1   MLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGA 60
           M++L+LTAAIS LHPP C   +SG C GP+ WQ+ FL +G G + IGAGGIRPCNLAFGA
Sbjct: 103 MMILTLTAAISNLHPPKCAAMESGTCIGPSNWQMLFLLSGFGFLTIGAGGIRPCNLAFGA 162

Query: 61  DQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSC 120
           +QF+PN ESGKQGI SFFNWYYFTFTFAMMIS T +VY+QS+V+WA GL IPA +MF+SC
Sbjct: 163 EQFDPNIESGKQGIRSFFNWYYFTFTFAMMISATFVVYIQSNVNWAVGLAIPACLMFMSC 222

Query: 121 AMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLP 180
           A+FF GS+LY KVKP+GSP+ S VQV VAAI+KR L  P  P   L +++P + +N++L 
Sbjct: 223 ALFFFGSKLYVKVKPKGSPITSVVQVLVAAIRKRRLSPPHNPRFCLFDYMPIDSLNTRLL 282

Query: 181 HTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVA 240
           +T QFR L+K+AI+T EDQ KS+GSA NPW+L S+Q+VEE K ++RVIPIWASAI+Y+ A
Sbjct: 283 YTNQFRWLEKSAIVTCEDQTKSNGSAANPWKLCSIQQVEEAKCVLRVIPIWASAIIYFAA 342

Query: 241 LVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKK 300
           +VQQQTYVVFQALQSDRR+GN  FK+PAAS+ IFSML LTIWIPIYDRI++P L++LT  
Sbjct: 343 IVQQQTYVVFQALQSDRRLGNNGFKVPAASFIIFSMLTLTIWIPIYDRILMPLLRKLTGN 402

Query: 301 EGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRP-VGLEQRRGAISSLSGLWLIP 359
           EGGIT+LQRM IG++L+I TM++S ++E++RR  AL+R  +G+  + GAISS+S LWL+P
Sbjct: 403 EGGITLLQRMGIGIVLSILTMLVSALVEERRRHFALTRATLGVAPKGGAISSMSALWLVP 462

Query: 360 QLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKG 419
           QL+L G +E F+ I +VEFYY+QFPENMRSI GS  F+G A S+YL+GFLIS+VH  T  
Sbjct: 463 QLALAGVAETFSTIGQVEFYYRQFPENMRSIAGSFLFLGLAGSSYLSGFLISIVHHVTAR 522

Query: 420 ASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGA-PEVAMEKLN 478
           +  GDWL EDLNKG+LD FYY++AALG LNF +FL+ AKWY+YK +   +  E +ME   
Sbjct: 523 SQHGDWLAEDLNKGKLDCFYYMIAALGFLNFCYFLVFAKWYRYKDNNIASTSEFSMEGKQ 582

Query: 479 PEK 481
           PEK
Sbjct: 583 PEK 585

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	484
TAIR|locus:2172249	616	GTR2 "AT5G62680" [Arabidopsis	0.960	0.754	0.557	1e-148
TAIR|locus:2035005	587	NRT1.9 "nitrate transporter 1.	0.950	0.783	0.559	8.9e-141
TAIR|locus:2196800	620	NRT1.7 "nitrate transporter 1.	0.938	0.732	0.460	6.8e-111
TAIR|locus:2205719	576	NRT1.6 "nitrate transporter 1.	0.927	0.779	0.442	4.9e-101
TAIR|locus:2080235	570	PTR1 "peptide transporter 1" [	0.933	0.792	0.391	1.1e-89
TAIR|locus:2026884	596	AT1G68570 [Arabidopsis thalian	0.942	0.765	0.402	3.2e-88
TAIR|locus:2150124	570	PTR5 "peptide transporter 5" [	0.929	0.789	0.377	1.4e-85
TAIR|locus:2041125	585	PTR2 "peptide transporter 2" [	0.935	0.774	0.369	1.2e-81
TAIR|locus:2018032	590	PTR6 "peptide transporter 6" [	0.884	0.725	0.402	5.2e-81
TAIR|locus:2147499	559	AT5G28470 [Arabidopsis thalian	0.880	0.762	0.371	4.7e-80

TAIR|locus:2172249 GTR2 "AT5G62680" [Arabidopsis thaliana (taxid:3702)]

 Score = 1452 (516.2 bits), Expect = 1.0e-148, P = 1.0e-148
 Identities = 260/466 (55%), Positives = 351/466 (75%)

Query:     3 VLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQ 62
             V+ LTAA+ +LHP  CG      C GP+  Q+AFL  GLG +V+GAGGIRPCNLAFGADQ
Sbjct:   131 VILLTAAVPQLHPAACGTAADSICNGPSGGQIAFLLMGLGFLVVGAGGIRPCNLAFGADQ 190

Query:    63 FNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAM 122
             FNP +ESGK+GI SFFNWY+FTFTFA ++SLT++VYVQS+VSW  GL IPA +MFL+C +
Sbjct:   191 FNPKSESGKRGIDSFFNWYFFTFTFAQILSLTLVVYVQSNVSWTIGLTIPAVLMFLACLI 250

Query:   123 FFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHT 182
             FF G +LY K+K  GSPLA   QV   AIKKR LK  ++PWL L+N+ P    NSKL +T
Sbjct:   251 FFAGDKLYVKIKASGSPLAGIAQVIAVAIKKRGLKPAKQPWLNLYNYYPPKYANSKLKYT 310

Query:   183 GQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALV 242
              QFR LDKAAI+TPED+++ DG   +PW+L +MQ+VEEVK ++RV+PIW ++ +YY+ + 
Sbjct:   311 DQFRFLDKAAILTPEDKLQPDGKPADPWKLCTMQQVEEVKCIVRVLPIWFASSIYYLTIT 370

Query:   243 QQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEG 302
             QQ TY VFQALQSDRR+G+  F IPAA+Y +F M G+T++I +YDR++VP ++R+T  + 
Sbjct:   371 QQMTYPVFQALQSDRRLGSGGFVIPAATYVVFLMTGMTVFIVVYDRVLVPTMRRITGLDT 430

Query:   303 GITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRP-VGLEQRRGAISSLSGLWLIPQL 361
             GIT+LQR+  G+  A  +++++G +E++RR+ AL++P +G+  R+G ISS+S +WLIPQL
Sbjct:   431 GITLLQRIGTGIFFATASLVVAGFVEERRRTFALTKPTLGMAPRKGEISSMSAMWLIPQL 490

Query:   362 SLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGAS 421
             SL G +EAF  I ++EFYYKQFPENMRS  GS+ +VG  +S+YL  FLI+ VHR T+ +S
Sbjct:   491 SLAGVAEAFAAIGQMEFYYKQFPENMRSFAGSIFYVGGGVSSYLGSFLIATVHRTTQNSS 550

Query:   422 TGDWLPEDLNKGRLDYFYYLVAAXXXXXXXXXXXCAKWYKYKGSGD 467
              G+WL EDLNKGRLD FY+++A             ++WY+YKGS D
Sbjct:   551 GGNWLAEDLNKGRLDLFYFMIAGILAVNFAYFLVMSRWYRYKGSDD 596

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0080167 "response to karrikin" evidence=IEP

GO:0009506 "plasmodesma" evidence=IDA

GO:0090448 "glucosinolate:hydrogen symporter activity" evidence=IDA

GO:0090449 "phloem glucosinolate loading" evidence=IMP

GO:1901349 "glucosinolate transport" evidence=IDA

TAIR|locus:2035005 NRT1.9 "nitrate transporter 1.9" [Arabidopsis thaliana (taxid:3702)]

 Score = 1377 (489.8 bits), Expect = 8.9e-141, P = 8.9e-141
 Identities = 259/463 (55%), Positives = 340/463 (73%)

Query:     2 LVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGAD 61
             + + LTA I  LHP  C  +    C GP+  Q+ FL   + L+VIGAGGIRPCNL FGAD
Sbjct:   106 VAMDLTAVIHPLHPAQCAKEIGSVCNGPSIGQIMFLAGAMVLLVIGAGGIRPCNLPFGAD 165

Query:    62 QFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCA 121
             QF+P T+ GK+GI SFFNWY+FTFTFA M+SLT+IVYVQS+VSW+ GL IPA +M L C 
Sbjct:   166 QFDPKTKEGKRGIESFFNWYFFTFTFAQMVSLTLIVYVQSNVSWSIGLAIPAILMLLGCI 225

Query:   122 MFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPH 181
             +FF GS+LY KVK  GSP+ S  +V V AIKKR LK P  P   L+N+I  +  NSKL H
Sbjct:   226 IFFAGSKLYVKVKASGSPIHSITRVIVVAIKKRRLK-PVGP-NELYNYIASDFKNSKLGH 283

Query:   182 TGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVAL 241
             T QFR LDK+AI T +D++  DGS ++ W+L SMQ+VEEVK +IRV+P+W SA ++Y+A 
Sbjct:   284 TEQFRFLDKSAIQTQDDKLNKDGSPVDAWKLCSMQQVEEVKCVIRVLPVWLSAALFYLAY 343

Query:   242 VQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKE 301
             +QQ TY +FQ+LQSDRR+G   F+IPA SY +F MLG+TI+IPIYDR++VP L++ T ++
Sbjct:   344 IQQTTYTIFQSLQSDRRLGPGSFQIPAGSYTVFLMLGMTIFIPIYDRVLVPFLRKYTGRD 403

Query:   302 GGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRP-VGLEQRRGAISSLSGLWLIPQ 360
             GGIT LQR+  G+ L I +M++S I+E  RR +AL++P +GL  R+GAISS+SG+WLIPQ
Sbjct:   404 GGITQLQRVGAGLFLCITSMMVSAIVEQYRRKVALTKPTLGLAPRKGAISSMSGMWLIPQ 463

Query:   361 LSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGA 420
             L L+G ++A   + ++EFYYKQFPENMRS  GSL + G  +++YL+ FL+S VH  T+G 
Sbjct:   464 LVLMGIADALAGVGQMEFYYKQFPENMRSFAGSLYYCGIGLASYLSTFLLSAVHDTTEGF 523

Query:   421 STGDWLPEDLNKGRLDYFYYLVAAXXXXXXXXXXXCAKWYKYK 463
             S G WLPEDLNKGRL+YFY+LVA             + WY+YK
Sbjct:   524 SGGSWLPEDLNKGRLEYFYFLVAGMMTLNLAYFLLVSHWYRYK 566

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0010233 "phloem transport" evidence=IMP

GO:0015112 "nitrate transmembrane transporter activity" evidence=IDA

GO:0090408 "phloem nitrate loading" evidence=IMP

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2196800 NRT1.7 "nitrate transporter 1.7" [Arabidopsis thaliana (taxid:3702)]

 Score = 1095 (390.5 bits), Expect = 6.8e-111, P = 6.8e-111
 Identities = 215/467 (46%), Positives = 305/467 (65%)

Query:     1 MLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGA 60
             ++ ++LTA+  +LHP  C +QD  +C GP   Q+  L  GL  + +G+GGIRPC++ FG 
Sbjct:   137 LITITLTASFPQLHPASCNSQDPLSCGGPNKLQIGVLLLGLCFLSVGSGGIRPCSIPFGV 196

Query:    61 DQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSC 120
             DQF+  TE G +G+ SFFNWYY TFT  ++I+ TV+VY+Q  VSW  G  IP  +M L+ 
Sbjct:   197 DQFDQRTEEGVKGVASFFNWYYMTFTVVLIITQTVVVYIQDQVSWIIGFSIPTGLMALAV 256

Query:   121 AMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIP--KNCINSK 178
              MFF G + Y  VKPEGS  +   QV VAA KKR LKLP E   T+  + P  K+ + SK
Sbjct:   257 VMFFAGMKRYVYVKPEGSIFSGIAQVIVAARKKRKLKLPAEDDGTVTYYDPAIKSSVLSK 316

Query:   179 LPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYY 238
             L  + QFRCLDKAA++  E  +  +G   + WRL S+Q+VEEVK LIR++PIW++ I+  
Sbjct:   317 LHRSNQFRCLDKAAVVI-EGDLTPEGPPADKWRLCSVQEVEEVKCLIRIVPIWSAGIISL 375

Query:   239 VALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLT 298
              A+  Q T+ V QAL+ DR +G   F+IPA S ++ S+L + I++P YDR+ VP ++R+T
Sbjct:   376 AAMTTQGTFTVSQALKMDRNLG-PKFEIPAGSLSVISLLTIGIFLPFYDRVFVPFMRRIT 434

Query:   299 KKEGGITILQRMAIGMILAIFTMIISGIIEDKRR--SLALSRPVGLEQRRGAISSLSGLW 356
               + GIT+LQR+  G++ AIF+MI++GI+E  RR  S+    P G+       + +S  W
Sbjct:   435 GHKSGITLLQRIGTGIVFAIFSMIVAGIVERMRRIRSINAGDPTGM-------TPMSVFW 487

Query:   357 LIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRF 416
             L PQL L+G  EAF II ++EF+  QFPE+MRSI  SL  + FA S+YL+ FL+++VH+F
Sbjct:   488 LSPQLILMGLCEAFNIIGQIEFFNSQFPEHMRSIANSLFSLSFAGSSYLSSFLVTVVHKF 547

Query:   417 TKGASTGDWLPEDLNKGRLDYFYYLVAAXXXXXXXXXXXCAKWYKYK 463
             + G    DWL ++LN G+LDYFYYL+A            CA+ Y+YK
Sbjct:   548 SGGHDRPDWLNKNLNAGKLDYFYYLIAVLGVVNLVYFWYCARGYRYK 594

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0015706 "nitrate transport" evidence=IMP

GO:0080054 "low affinity nitrate transmembrane transporter activity" evidence=IDA

GO:0080055 "low affinity nitrate transport" evidence=IDA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2205719 NRT1.6 "nitrate transporter 1.6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1002 (357.8 bits), Expect = 4.9e-101, P = 4.9e-101
 Identities = 207/468 (44%), Positives = 289/468 (61%)

Query:     1 MLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGA 60
             ++ ++LTA + +LHPP C N     C  P   QL  LF GLG + IG+GGIRPC++ FG 
Sbjct:   100 LMTVTLTACLPQLHPPPCNNPHPDECDDPNKLQLGILFLGLGFLSIGSGGIRPCSIPFGV 159

Query:    61 DQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSC 120
             DQF+  TE G +G+ SFFNWYY T T  ++ S TV+VY+Q+ VSW  G  IP  +M  + 
Sbjct:   160 DQFDQRTEQGLKGVASFFNWYYLTLTMVLIFSHTVVVYLQT-VSWVIGFSIPTSLMACAV 218

Query:   121 AMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIP--KNCINSK 178
              +FF+G R Y  VKPEGS  +   +V VAA KKR LK+      T   + P  K  + SK
Sbjct:   219 VLFFVGMRFYVYVKPEGSVFSGIARVIVAARKKRDLKISLVDDGTEEYYEPPVKPGVLSK 278

Query:   179 LPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYY 238
             LP T QF+ LDKAA++   D + S+G   N WRL S+Q+VEEVK LIRV+P+W++ I+  
Sbjct:   279 LPLTDQFKFLDKAAVILDGD-LTSEGVPANKWRLCSIQEVEEVKCLIRVVPVWSAGIISI 337

Query:   239 VALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLT 298
             VA+  Q T++VFQA + DR +G  HF+IPAAS  + S + + IW+PIY+ ++VP L R+ 
Sbjct:   338 VAMTTQATFMVFQATKMDRHMG-PHFEIPAASITVISYITIGIWVPIYEHLLVPFLWRMR 396

Query:   299 KKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLI 358
             K    +T+LQRM IG++ AI +M  +G +E  RR+ A             ++ +S  WL 
Sbjct:   397 KFR--VTLLQRMGIGIVFAILSMFTAGFVEGVRRTRATE-----------MTQMSVFWLA 443

Query:   359 PQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTK 418
               L L+G  E+F  I  +EF+  QFPE+MRSI  SL  + FA +NYL+  L++ VH+ + 
Sbjct:   444 LPLILMGLCESFNFIGLIEFFNSQFPEHMRSIANSLFPLSFAAANYLSSLLVTTVHKVSG 503

Query:   419 GASTGDWLPEDLNKGRLDYFYYLVAAXXXXXXXXXXXCAKWYKYK-GS 465
                  DWL +DL++G+LDYFYYL+A            CA  Y+YK GS
Sbjct:   504 TKDHPDWLNKDLDRGKLDYFYYLIAVLGVVNLVYFWYCAHRYQYKAGS 551

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0010098 "suspensor development" evidence=IMP

GO:0043562 "cellular response to nitrogen levels" evidence=IEP

GO:0048316 "seed development" evidence=IMP

GO:0080054 "low affinity nitrate transmembrane transporter activity" evidence=IDA

GO:0080055 "low affinity nitrate transport" evidence=IDA

TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 895 (320.1 bits), Expect = 1.1e-89, P = 1.1e-89
 Identities = 182/465 (39%), Positives = 276/465 (59%)

Query:     1 MLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGA 60
             M +L+L+A++  L P +C N D+  C  P   Q A  F  L ++ +G GGI+PC  +FGA
Sbjct:   110 MTLLTLSASVPGLKPGNC-NADT--CH-PNSSQTAVFFVALYMIALGTGGIKPCVSSFGA 165

Query:    61 DQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSC 120
             DQF+ N E+ K   +SFFNW+YF+     +I+ TV+V++Q +V W WG G+P   M ++ 
Sbjct:   166 DQFDENDENEKIKKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAV 225

Query:   121 AMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINS--K 178
               FF GSR Y   +P GSPL    QV VAA +K  +K+PE+  L       ++ I    K
Sbjct:   226 CFFFFGSRFYRLQRPGGSPLTRIFQVIVAAFRKISVKVPEDKSLLFETADDESNIKGSRK 285

Query:   179 LPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYY 238
             L HT   +  DKAA+ +  D IK DG  +NPWRL S+ +VEE+K +I ++P+WA+ IV+ 
Sbjct:   286 LVHTDNLKFFDKAAVESQSDSIK-DGE-VNPWRLCSVTQVEELKSIITLLPVWATGIVFA 343

Query:   239 VALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLT 298
                 Q  T  V Q    D+ +G  +F+IP+AS ++F  + +  W P+YD+ I+P  ++ T
Sbjct:   344 TVYSQMSTMFVLQGNTMDQHMGK-NFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFT 402

Query:   299 KKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLI 358
             + E G T LQRM IG++++IF MI +G++E  R     +     +Q++     +S  W I
Sbjct:   403 RNERGFTQLQRMGIGLVVSIFAMITAGVLEVVRLDYVKTHNA-YDQKQ---IHMSIFWQI 458

Query:   359 PQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTK 418
             PQ  LIG +E FT I ++EF+Y Q P+ MRS+  +L+    A+ NYL+  L+++V + TK
Sbjct:   459 PQYLLIGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITK 518

Query:   419 GASTGDWLPEDLNKGRLDYFYYLVAAXXXXXXXXXXXCAKWYKYK 463
                   W+P++LN+G LDYF+YL+A             +K YKYK
Sbjct:   519 KNGKPGWIPDNLNRGHLDYFFYLLATLSFLNFLVYLWISKRYKYK 563

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0006807 "nitrogen compound metabolic process" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0015824 "proline transport" evidence=RCA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:2026884 AT1G68570 [Arabidopsis thaliana (taxid:3702)]

 Score = 881 (315.2 bits), Expect = 3.2e-88, P = 3.2e-88
 Identities = 188/467 (40%), Positives = 279/467 (59%)

Query:     1 MLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGA 60
             M +L+++A I  L PP C  ++   C      QL+ L+  L L  +G+GGIRPC +AFGA
Sbjct:   109 MTLLTISAIIPTLRPPPCKGEE--VCVVADTAQLSILYVALLLGALGSGGIRPCVVAFGA 166

Query:    61 DQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSC 120
             DQF+ +  +      ++FNWYYF    A+++++TV+V++Q +V W  GLGIP   MFLS 
Sbjct:   167 DQFDESDPNQTTKTWNYFNWYYFCMGAAVLLAVTVLVWIQDNVGWGLGLGIPTVAMFLSV 226

Query:   121 AMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNH---IPKNCINS 177
               F  G +LY  + P GSP    +QV VAA +KR L++  +P L   N     P + +  
Sbjct:   227 IAFVGGFQLYRHLVPAGSPFTRLIQVGVAAFRKRKLRMVSDPSLLYFNDEIDAPIS-LGG 285

Query:   178 KLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVY 237
             KL HT     LDKAAI+T ED +K  G   N WRLS++ +VEE+K +IR+ PI AS I+ 
Sbjct:   286 KLTHTKHMSFLDKAAIVTEEDNLKP-GQIPNHWRLSTVHRVEELKSVIRMGPIGASGILL 344

Query:   238 YVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRL 297
               A  QQ T+ + QA   +R + N+ F+IPA S ++F+ + +   I  YDR+ V   ++ 
Sbjct:   345 ITAYAQQGTFSLQQAKTMNRHLTNS-FQIPAGSMSVFTTVAMLTTIIFYDRVFVKVARKF 403

Query:   298 TKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWL 357
             T  E GIT L RM IG +++I   +++G +E KR+S+A+    GL  +   I  +S LWL
Sbjct:   404 TGLERGITFLHRMGIGFVISIIATLVAGFVEVKRKSVAIEH--GLLDKPHTIVPISFLWL 461

Query:   358 IPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFT 417
             IPQ  L G +EAF  I  +EF+Y Q PE+MRS   +L ++  +I NY++  L+++VH+F+
Sbjct:   462 IPQYGLHGVAEAFMSIGHLEFFYDQAPESMRSTATALFWMAISIGNYVSTLLVTLVHKFS 521

Query:   418 KGASTGDWLPED-LNKGRLDYFYYLVAAXXXXXXXXXXXCAKWYKYK 463
                   +WLP++ LN+GRL+YFY+L+             CAK Y YK
Sbjct:   522 AKPDGSNWLPDNNLNRGRLEYFYWLITVLQAVNLVYYLWCAKIYTYK 568

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 856 (306.4 bits), Expect = 1.4e-85, P = 1.4e-85
 Identities = 176/466 (37%), Positives = 271/466 (58%)

Query:     1 MLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGA 60
             M +L+++A++  L  P C  +   A  G T    A  F  L L+ +G GGI+PC  +FGA
Sbjct:   111 MTLLTISASVPGL-TPTCSGETCHATAGQT----AITFIALYLIALGTGGIKPCVSSFGA 165

Query:    61 DQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSC 120
             DQF+   E  K+  +SFFNW+YF      MI+ +V+V++Q +V W WGLG+P   M ++ 
Sbjct:   166 DQFDDTDEKEKESKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAV 225

Query:   121 AMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCI--NSK 178
               FF GS  Y   KP GSPL   +QV VA+ +K  +K+PE+  L   N   ++ I  + K
Sbjct:   226 VFFFAGSNFYRLQKPGGSPLTRMLQVIVASCRKSKVKIPEDESLLYENQDAESSIIGSRK 285

Query:   179 LPHTGQFRCLDKAAIMTPEDQIKSDGSA-INPWRLSSMQKVEEVKVLIRVIPIWASAIVY 237
             L HT      DKAA+ T  D   + G+A  + W+L ++ +VEE+K LIR++PIWA+ IV+
Sbjct:   286 LEHTKILTFFDKAAVETESD---NKGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVF 342

Query:   238 YVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRL 297
                  Q  T  V Q    D+ +G  +FKIP+AS ++F  L +  W P+YD++IVP  ++ 
Sbjct:   343 ASVYSQMGTVFVLQGNTLDQHMG-PNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKY 401

Query:   298 TKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWL 357
             T  E G T LQR+ IG++++IF+M+ +GI+E  R +   +  +  E+       ++  W 
Sbjct:   402 TGHERGFTQLQRIGIGLVISIFSMVSAGILEVARLNYVQTHNLYNEET----IPMTIFWQ 457

Query:   358 IPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFT 417
             +PQ  L+G +E FT I ++EF+Y Q P+ MRS+  +L+    A  NYL+ FL+++V + T
Sbjct:   458 VPQYFLVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVT 517

Query:   418 KGASTGDWLPEDLNKGRLDYFYYLVAAXXXXXXXXXXXCAKWYKYK 463
             +      W+ ++LN G LDYF++L+A             AKWY YK
Sbjct:   518 RSGGRPGWIAKNLNNGHLDYFFWLLAGLSFLNFLVYLWIAKWYTYK 563

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009860 "pollen tube growth" evidence=IMP

GO:0042936 "dipeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 819 (293.4 bits), Expect = 1.2e-81, P = 1.2e-81
 Identities = 172/465 (36%), Positives = 265/465 (56%)

Query:     1 MLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGA 60
             M  L+L+A++  L P +C       CP  TP Q A  F GL L+ +G GGI+PC  +FGA
Sbjct:   127 MSALTLSASVPALKPAECIGD---FCPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFGA 183

Query:    61 DQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSC 120
             DQF+      +    SFFNW+YF+     ++S +++V++Q +  W  G GIP   M L+ 
Sbjct:   184 DQFDDTDSRERVRKASFFNWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAI 243

Query:   121 AMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCI--NSK 178
             A FF G+ LY   KP GSP+    QV VA+ +K  +K+PE+  L        + I  + K
Sbjct:   244 ASFFFGTPLYRFQKPGGSPITRISQVVVASFRKSSVKVPEDATLLYETQDKNSAIAGSRK 303

Query:   179 LPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYY 238
             + HT   + LDKAA+++ E++ KS G   N WRL ++ +VEE+K+LIR+ PIWAS I++ 
Sbjct:   304 IEHTDDCQYLDKAAVIS-EEESKS-GDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFS 361

Query:   239 VALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLT 298
                 Q  T  V Q    + ++G+  F++P A+   F    + IW+P+YDR IVP  ++ T
Sbjct:   362 AVYAQMSTMFVQQGRAMNCKIGS--FQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFT 419

Query:   299 KKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLI 358
               + G T +QRM IG+ +++  M  + I+E  R  L ++  +GL +  GA   +S LW I
Sbjct:   420 GVDKGFTEIQRMGIGLFVSVLCMAAAAIVEIIR--LHMANDLGLVES-GAPVPISVLWQI 476

Query:   359 PQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTK 418
             PQ  ++G +E F  I ++EF+Y Q P+ MRS+  +LA +  A+ NYL+  ++++V  FT 
Sbjct:   477 PQYFILGAAEVFYFIGQLEFFYDQSPDAMRSLCSALALLTNALGNYLSSLILTLVTYFTT 536

Query:   419 GASTGDWLPEDLNKGRLDYFYYLVAAXXXXXXXXXXXCAKWYKYK 463
                   W+ ++LN G LDYF++L+A             A  YK K
Sbjct:   537 RNGQEGWISDNLNSGHLDYFFWLLAGLSLVNMAVYFFSAARYKQK 581

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006869 "lipid transport" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0015334 "high affinity oligopeptide transporter activity" evidence=IDA

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0015197 "peptide transporter activity" evidence=ISS

GO:0015833 "peptide transport" evidence=TAS

TAIR|locus:2018032 PTR6 "peptide transporter 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 813 (291.2 bits), Expect = 5.2e-81, P = 5.2e-81
 Identities = 180/447 (40%), Positives = 261/447 (58%)

Query:     1 MLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGA 60
             M +L+L+A++  L P  C    +  C   T  Q A  FTGL L+ +G GGI+PC  +FGA
Sbjct:   138 MALLTLSASLPVLKPAACAGVAAALCSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFGA 197

Query:    61 DQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSC 120
             DQF+      +    SFFNW+YF+      IS T++V+VQ +V W  G  IP   M +S 
Sbjct:   198 DQFDDTDPRERVRKASFFNWFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVSI 257

Query:   121 AMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCI---NS 177
             A FF+G+ LY   KP GSP+    QV VAA +K  L LPE+    L+    KN +   + 
Sbjct:   258 ASFFIGTPLYRFQKPGGSPITRVCQVLVAAYRKLKLNLPEDISF-LYETREKNSMIAGSR 316

Query:   178 KLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVY 237
             K+ HT  ++ LDKAA+++ E + KS G+  NPW+L ++ +VEEVK LIR+ PIWAS IVY
Sbjct:   317 KIQHTDGYKFLDKAAVIS-EYESKS-GAFSNPWKLCTVTQVEEVKTLIRMFPIWASGIVY 374

Query:   238 YVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRL 297
              V   Q  T  V Q    +R + +  F+IP AS+ +F  L + I IPIYDR +VP ++R 
Sbjct:   375 SVLYSQISTLFVQQGRSMNRIIRS--FEIPPASFGVFDTLIVLISIPIYDRFLVPFVRRF 432

Query:   298 TKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWL 357
             T    G+T LQRM IG+ L++ ++  + I+E  R  LA               ++S  W 
Sbjct:   433 TGIPKGLTDLQRMGIGLFLSVLSIAAAAIVETVRLQLAQD-----------FVAMSIFWQ 481

Query:   358 IPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFT 417
             IPQ  L+G +E F  I  VEF+Y + P+ MRS+  +LA +  A+ +YL+  ++++V  FT
Sbjct:   482 IPQYILMGIAEVFFFIGRVEFFYDESPDAMRSVCSALALLNTAVGSYLSSLILTLVAYFT 541

Query:   418 KGASTGDWLPEDLNKGRLDYFYYLVAA 444
                    W+P+DLNKG LDYF++L+ +
Sbjct:   542 ALGGKDGWVPDDLNKGHLDYFFWLLVS 568

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2147499 AT5G28470 [Arabidopsis thaliana (taxid:3702)]

 Score = 804 (288.1 bits), Expect = 4.7e-80, P = 4.7e-80
 Identities = 167/449 (37%), Positives = 275/449 (61%)

Query:     1 MLVLSLTAAISKLHPPDCGNQDSGACPG-PTPWQLAFLFTGLGLMVIGAGGIRPCNLAFG 59
             M + +LTAA+  L P  C   D   C   P  WQL  LF+GLGL+ IGAGG+RPCN+AFG
Sbjct:   103 MGIFALTAALPSLRPDAC--IDPSNCSNQPAKWQLGVLFSGLGLLAIGAGGVRPCNIAFG 160

Query:    60 ADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLS 119
             ADQF+ +T+ GK  + +FFNW+YF+FT A++I+LT +VY+Q+++SW  G  IP   + LS
Sbjct:   161 ADQFDTSTKKGKAHLETFFNWWYFSFTVALVIALTGVVYIQTNISWVIGFVIPTACLALS 220

Query:   120 CAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTL---HNHIPKNCIN 176
                F +G   Y   K EGS  A  V+V  AA KKR +K   +    +   ++  P   + 
Sbjct:   221 ITTFVIGQHTYICAKAEGSVFADIVKVVTAACKKRKVKPGSDITFYIGPSNDGSPTTLVR 280

Query:   177 SKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIV 236
              K  H  + R  DKA+I+T  +++  DG+A   WRL S+Q+V+ +K +  ++P+W + I 
Sbjct:   281 DK--H--RLRFFDKASIVTNPNELNEDGNAKYKWRLCSVQQVKNLKCVTAILPVWVTGIA 336

Query:   237 YYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQR 296
              ++   QQ  Y + QA+Q D+  G  +F++PA    + SM+ L IWI +Y+ +I+P +++
Sbjct:   337 CFILTDQQNIYGILQAMQMDKTFGPHNFQVPAGWMNLVSMITLAIWISLYECVIIPIVKQ 396

Query:   297 LTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA-ISSLSGL 355
             +T ++  +T+  R+ I  ++ I  MI++G  E KRR+ AL        + G+ +S +S +
Sbjct:   397 ITGRKKRLTLKHRIEI--VMGIICMIVAGFQEKKRRASAL--------KNGSFVSPVSIV 446

Query:   356 WLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR 415
              L+PQ +L G +EAF+ +A +EF   + PE+MR++ G++ F+  +I++Y+   LI+++  
Sbjct:   447 MLLPQFALAGLTEAFSAVALMEFLTVRMPEHMRAVAGAIFFLSSSIASYICTLLINVIDA 506

Query:   416 FTKGASTGDWLPE-DLNKGRLDYFYYLVA 443
              T+      WL + DLNK RL+ +++++A
Sbjct:   507 VTRKEGKS-WLGDKDLNKNRLENYFFIIA 534

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009860 "pollen tube growth" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LV10	PTR53_ARATH	No assigned EC number	0.5653	0.9628	0.7564	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00000076001 SubName- Full=Chromosome chr17 scaffold_101, whole genome shotgun sequence; (586 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	484
pfam00854	372	pfam00854, PTR2, POT family	4e-54
TIGR00926	641	TIGR00926, 2A1704, Peptide:H+ symporter (also tran	1e-19
COG3104	498	COG3104, PTR2, Dipeptide/tripeptide permease [Amin	2e-11

>gnl|CDD|216153 pfam00854, PTR2, POT family

 Score =  185 bits (472), Expect = 4e-54
 Identities = 109/383 (28%), Positives = 167/383 (43%), Gaps = 43/383 (11%)

Query: 26  CPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTF 85
            P  +P Q+A  + GL L+ +G GGI+P   AFGADQF+   +  +     FF+W+YF+ 
Sbjct: 24  PPSLSPVQVALFYIGLYLIALGTGGIKPNVSAFGADQFDETQDPRR---DGFFSWFYFSI 80

Query: 86  TFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTV- 144
               +I+  +  Y+Q +V +  G G+PA  M L+  +F LGSR Y K  P G    +   
Sbjct: 81  NAGSLIATIITPYLQQNVGYPLGFGLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCI 140

Query: 145 -QVFVAAIKKRHLKLPE-EPWLT-LHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIK 201
             +  AA K R L+LP+   WL        K  I+    HT     +             
Sbjct: 141 AFIITAAGKNRKLQLPKDSHWLYWALEKYNKRSISQTKVHTR-VAVIFIPLPKF------ 193

Query: 202 SDGSAINPWRLSSMQ-KVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVG 260
                   W L   Q  V  ++ ++ ++PIWA  I+      Q  T +V Q    DR + 
Sbjct: 194 --------WALFDQQGSVWLLQAILLMLPIWAFWILPDQMWTQLATLIVRQVPTMDRIIY 245

Query: 261 NTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFT 320
              F+IP AS+  F+ L + I +PI D ++ P L+     + G+T+ QR  +GM + I  
Sbjct: 246 PL-FEIPPASFQSFNPLAVLILLPILDFLVYPLLRL----KRGLTLPQRFGLGMFILIVA 300

Query: 321 MIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFT-IIAEV--- 376
             ++ I+E KR   A            A+   S  W +P   L    E F   +      
Sbjct: 301 NFLAAIVEAKRPRYA-----------AALGLTSPGWTVPLFILWSLPELFISGVGLAGAL 349

Query: 377 EFYYKQFPENMRSIGGSLAFVGF 399
           EF     P +M S+   L+    
Sbjct: 350 EFAPDALPSSMMSLWTLLSAAAA 372

The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372

>gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

 Score = 91.8 bits (228), Expect = 1e-19
 Identities = 81/308 (26%), Positives = 134/308 (43%), Gaps = 55/308 (17%)

Query: 31  PWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMM 90
           P   A    GL L+ +G GGI+PC  AFG DQF    E        FF+++YF      +
Sbjct: 82  PLHDALSLVGLALIALGTGGIKPCVSAFGGDQF---EERQLSLRFRFFSFFYFAINAGSL 138

Query: 91  ISLTVIVYVQSDVS-------WAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLAST 143
            S  +   ++ DV        +    G+P  +M L+  +F +GS++Y K  P G+ ++  
Sbjct: 139 FSTIITPILRGDVGCFGCQDCFPLAFGVPGILMTLALIVFSMGSKMYKKKPPVGNIVSKV 198

Query: 144 VQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSD 203
           ++  V A+KKR  +   E W  LH                    LD AA       I+S 
Sbjct: 199 MKCIVFALKKR-FRTRSEDWPRLHW-------------------LDWAAPKYLIRMIRS- 237

Query: 204 GSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNT- 262
                             K L+RV+ ++    +++ AL  QQ       LQ+ R  G+  
Sbjct: 238 -----------------TKRLLRVLFLFIPLPMFW-ALFDQQGSR--WTLQATRMDGDVG 277

Query: 263 HFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMI 322
            F I        + L + I +PI+D ++ P L +   +    T L++MA+GM+LA     
Sbjct: 278 LFPIQPDQMQAVNPLLVLILVPIFDYVVYPALAKCGTR---FTSLRKMAVGMLLAALAFA 334

Query: 323 ISGIIEDK 330
           ++ ++++K
Sbjct: 335 VAALLQNK 342

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641

>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]

 Score = 65.4 bits (160), Expect = 2e-11
 Identities = 64/384 (16%), Positives = 125/384 (32%), Gaps = 59/384 (15%)

Query: 34  LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISL 93
              L+ GL L+++G G  +P   +   + +  +      G    F  +Y       +I+ 
Sbjct: 117 PGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGG----FTLFYMGINIGSLIAP 172

Query: 94  TVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYA----KVKPEGSPLASTVQVFVA 149
            +   +  +  W  G G+ A  M +   +F LG R          P        + V   
Sbjct: 173 IITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGG 232

Query: 150 AIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINP 209
            +    + +       L N          L            +I+               
Sbjct: 233 LV----VMILAALLTLLLNQ--NTFSGVLL----------VISILIAIIYFAE------- 269

Query: 210 WRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTH----FK 265
               S +  +E + L+  IP++  A++++   + +Q       L +DR V        F+
Sbjct: 270 -AFRSPKVFDERRRLLAAIPLFLFAVIFWA--LYEQMGSSL-NLYADRNV--NRQIFGFE 323

Query: 266 IPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISG 325
           +P A +   +   + ++ PI   +       L +     +   + A+G+ILA    +I  
Sbjct: 324 VPPAWFQSLNPFFIILFSPILAALWTK----LGRGNKQPSTPIKFALGLILAGLGFLILL 379

Query: 326 IIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPE 385
           +                    G    +S  WL+    L  F E F     +    K  P 
Sbjct: 380 L--------------AGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPP 425

Query: 386 NMRSIGGSLAFVGFAISNYLNGFL 409
            ++S   ++ F+  A    L G +
Sbjct: 426 ALKSFIMAMWFLTVAAGQTLGGQV 449

Length = 498

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	484
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	100.0
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	100.0
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	100.0
PRK15462	493	dipeptide/tripeptide permease D; Provisional	100.0
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	100.0
PRK10207	489	dipeptide/tripeptide permease B; Provisional	100.0
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	100.0
PRK09584	500	tppB putative tripeptide transporter permease; Rev	100.0
PRK10489	417	enterobactin exporter EntS; Provisional	99.54
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.44
PRK05122	399	major facilitator superfamily transporter; Provisi	99.42
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.39
PRK03545	390	putative arabinose transporter; Provisional	99.39
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.38
TIGR00893	399	2A0114 d-galactonate transporter.	99.36
PRK09874	408	drug efflux system protein MdtG; Provisional	99.36
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.34
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.34
TIGR00900	365	2A0121 H+ Antiporter protein.	99.33
PRK10054	395	putative transporter; Provisional	99.33
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.33
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.32
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.29
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.28
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.28
PRK12382	392	putative transporter; Provisional	99.28
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.27
PRK10504	471	putative transporter; Provisional	99.27
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.25
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.24
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.24
PRK11010	491	ampG muropeptide transporter; Validated	99.22
KOG2532	466	consensus Permease of the major facilitator superf	99.21
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.19
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.19
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.16
PRK12307	426	putative sialic acid transporter; Provisional	99.16
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.15
PRK15011	393	sugar efflux transporter B; Provisional	99.15
TIGR00895	398	2A0115 benzoate transport.	99.14
PRK11663	434	regulatory protein UhpC; Provisional	99.14
TIGR00901	356	2A0125 AmpG-related permease.	99.13
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.13
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.12
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.11
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.11
PRK09705	393	cynX putative cyanate transporter; Provisional	99.1
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.1
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.1
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.09
PRK03633	381	putative MFS family transporter protein; Provision	99.08
PRK03893	496	putative sialic acid transporter; Provisional	99.08
PRK10091	382	MFS transport protein AraJ; Provisional	99.07
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.06
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.04
PRK09528	420	lacY galactoside permease; Reviewed	99.04
PRK10642	490	proline/glycine betaine transporter; Provisional	99.04
PRK03699	394	putative transporter; Provisional	99.03
PRK11043	401	putative transporter; Provisional	99.03
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.03
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.03
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.02
TIGR00898	505	2A0119 cation transport protein.	99.02
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.02
PRK11902	402	ampG muropeptide transporter; Reviewed	99.0
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.0
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.0
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.98
PRK09952	438	shikimate transporter; Provisional	98.97
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.97
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.94
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.93
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.93
PRK09848	448	glucuronide transporter; Provisional	98.92
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.9
PF13347	428	MFS_2: MFS/sugar transport protein	98.9
TIGR00891	405	2A0112 putative sialic acid transporter.	98.89
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.89
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.88
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	98.87
PRK15075	434	citrate-proton symporter; Provisional	98.87
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.82
PRK09669	444	putative symporter YagG; Provisional	98.8
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.8
PLN00028	476	nitrate transmembrane transporter; Provisional	98.78
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.78
PRK10429	473	melibiose:sodium symporter; Provisional	98.76
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.74
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.69
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.55
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.54
TIGR00805	633	oat sodium-independent organic anion transporter.	98.51
PRK10133	438	L-fucose transporter; Provisional	98.47
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.46
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.38
KOG2533	495	consensus Permease of the major facilitator superf	98.36
PRK03545	390	putative arabinose transporter; Provisional	98.31
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.26
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.25
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.24
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.24
PRK11462	460	putative transporter; Provisional	98.23
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.22
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.2
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	98.19
TIGR00893	399	2A0114 d-galactonate transporter.	98.16
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.16
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.14
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.13
PRK11663	434	regulatory protein UhpC; Provisional	98.13
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.1
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.1
PRK10091	382	MFS transport protein AraJ; Provisional	98.08
TIGR00900	365	2A0121 H+ Antiporter protein.	98.07
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.07
PRK10054	395	putative transporter; Provisional	98.07
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.06
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.05
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.05
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.04
TIGR00891	405	2A0112 putative sialic acid transporter.	98.04
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.04
KOG3626	735	consensus Organic anion transporter [Secondary met	98.03
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.02
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.02
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	97.99
KOG3762	618	consensus Predicted transporter [General function	97.92
PRK09874	408	drug efflux system protein MdtG; Provisional	97.92
COG2211	467	MelB Na+/melibiose symporter and related transport	97.91
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	97.9
PRK10473	392	multidrug efflux system protein MdtL; Provisional	97.9
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	97.89
PRK10504	471	putative transporter; Provisional	97.89
TIGR00895	398	2A0115 benzoate transport.	97.88
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.87
PRK03699	394	putative transporter; Provisional	97.86
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	97.85
PRK12307	426	putative sialic acid transporter; Provisional	97.84
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	97.84
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	97.84
PRK15403	413	multidrug efflux system protein MdtM; Provisional	97.84
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	97.82
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	97.81
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	97.81
PRK03633	381	putative MFS family transporter protein; Provision	97.8
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	97.76
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	97.74
PRK12382	392	putative transporter; Provisional	97.74
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	97.74
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	97.73
KOG2533	495	consensus Permease of the major facilitator superf	97.72
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	97.7
PRK09705	393	cynX putative cyanate transporter; Provisional	97.69
KOG2615	451	consensus Permease of the major facilitator superf	97.69
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	97.68
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	97.68
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	97.68
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	97.67
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	97.67
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.66
PRK11652	394	emrD multidrug resistance protein D; Provisional	97.66
PRK03893	496	putative sialic acid transporter; Provisional	97.65
PRK05122	399	major facilitator superfamily transporter; Provisi	97.64
PRK11010	491	ampG muropeptide transporter; Validated	97.6
PRK10489	417	enterobactin exporter EntS; Provisional	97.6
TIGR00805	633	oat sodium-independent organic anion transporter.	97.59
PRK11195	393	lysophospholipid transporter LplT; Provisional	97.59
TIGR00897	402	2A0118 polyol permease family. This family of prot	97.57
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	97.56
PRK11043	401	putative transporter; Provisional	97.55
PRK10207	489	dipeptide/tripeptide permease B; Provisional	97.52
TIGR00892	455	2A0113 monocarboxylate transporter 1.	97.48
PRK09584	500	tppB putative tripeptide transporter permease; Rev	97.47
COG2270	438	Permeases of the major facilitator superfamily [Ge	97.45
PRK10133	438	L-fucose transporter; Provisional	97.43
TIGR00898	505	2A0119 cation transport protein.	97.43
TIGR00901	356	2A0125 AmpG-related permease.	97.41
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	97.39
KOG0569	485	consensus Permease of the major facilitator superf	97.38
PRK10077	479	xylE D-xylose transporter XylE; Provisional	97.36
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	97.35
PTZ00207	591	hypothetical protein; Provisional	97.34
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	97.27
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	97.24
PLN00028	476	nitrate transmembrane transporter; Provisional	97.21
PRK11902	402	ampG muropeptide transporter; Reviewed	97.15
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	97.15
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	97.09
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.07
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	97.07
PRK10406	432	alpha-ketoglutarate transporter; Provisional	97.01
KOG2532	466	consensus Permease of the major facilitator superf	97.0
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	96.95
TIGR00896	355	CynX cyanate transporter. This family of proteins	96.93
PRK10642	490	proline/glycine betaine transporter; Provisional	96.92
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	96.91
PRK15462	493	dipeptide/tripeptide permease D; Provisional	96.89
KOG0254	513	consensus Predicted transporter (major facilitator	96.81
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	96.81
KOG3098	461	consensus Uncharacterized conserved protein [Funct	96.79
KOG2325	488	consensus Predicted transporter/transmembrane prot	96.69
PRK15011	393	sugar efflux transporter B; Provisional	96.59
KOG3626	735	consensus Organic anion transporter [Secondary met	96.59
PTZ00207	591	hypothetical protein; Provisional	96.46
PRK09952	438	shikimate transporter; Provisional	96.4
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	96.39
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	96.36
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	96.34
PRK15075	434	citrate-proton symporter; Provisional	96.34
KOG0569	485	consensus Permease of the major facilitator superf	96.33
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.23
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	96.19
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	96.16
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	96.14
KOG2325	488	consensus Predicted transporter/transmembrane prot	96.09
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	96.02
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	96.01
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	95.94
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	95.87
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	95.85
KOG2563	480	consensus Permease of the major facilitator superf	95.84
KOG0254	513	consensus Predicted transporter (major facilitator	95.77
PRK09528	420	lacY galactoside permease; Reviewed	95.65
PRK11462	460	putative transporter; Provisional	95.64
PF13347	428	MFS_2: MFS/sugar transport protein	95.57
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	95.53
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	95.52
KOG2615	451	consensus Permease of the major facilitator superf	95.37
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	95.33
PRK09669	444	putative symporter YagG; Provisional	95.0
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	94.95
PRK10429	473	melibiose:sodium symporter; Provisional	94.67
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	94.58
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	94.52
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	94.15
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	94.09
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	93.87
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	93.7
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	93.46
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	92.82
COG2211	467	MelB Na+/melibiose symporter and related transport	92.77
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	91.76
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	91.37
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	91.13
PRK09848	448	glucuronide transporter; Provisional	90.48
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	90.43
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	89.43
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	87.97
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	87.59
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	86.73
KOG2816	463	consensus Predicted transporter ADD1 (major facili	86.47
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	86.1
TIGR00788	468	fbt folate/biopterin transporter. The only functio	84.47
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	83.28
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	80.82
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	80.75

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=100.00  E-value=5.6e-68  Score=558.67  Aligned_cols=449  Identities=43%  Similarity=0.751  Sum_probs=401.2

Q ss_pred             eeeehhhhcccCCCCCCCCCC-CCCCCCCCchhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHH
Q 011513            2 LVLSLTAAISKLHPPDCGNQD-SGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNW   80 (484)
Q Consensus         2 ~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~   80 (484)
                      .+||+++++|.|+|+.|.... ...|+.|+..+...+|.++.++++|+|+.|||+.++++|||++.+++++..+.++|+|
T Consensus       119 ~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW  198 (571)
T KOG1237|consen  119 FGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNW  198 (571)
T ss_pred             HHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhH
Confidence            568999999999999981111 3489999999999999999999999999999999999999998777777778899999


Q ss_pred             HHHhhhHHHHHHhhhheeeeecccccccchhhhHHHHHHHHHHHhccceeeecCCCCCchhhHHHHHHHHHHhccccCCC
Q 011513           81 YYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPE  160 (484)
Q Consensus        81 ~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~~~~~~l~~i~~l~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~  160 (484)
                      +|+.+|.|.+++.++..|+|++.||.++|.++++.|+++.++|+.+.+.|++++|.++|++.+.+|++++.+|++.+.+.
T Consensus       199 ~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k~~~~~~~  278 (571)
T KOG1237|consen  199 FYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFKRKAVVSL  278 (571)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHHHhccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998876665


Q ss_pred             CCccccccCCCccccCCCCCCCCcccccccccccCCccccccCCCCCCCcccCcchhHHHHHHhHhhHHHHHHHHHHHHH
Q 011513          161 EPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVA  240 (484)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~  240 (484)
                      +.+..  +..  .......++++..+++|+|++..+...  +.+...++|++|++++|||.|.+++++|+|...++||++
T Consensus       279 ~~~~~--~~~--~~~~~~~~~t~~f~~l~kaa~~~~~~~--~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~~i~~~~~  352 (571)
T KOG1237|consen  279 DPEEL--YYD--CTDSVAIEGTKPFRFLDKAALKTSDDL--KDGLDANPWRLCTVTQVEEVKAVLRLLPIWLTTIIYSTV  352 (571)
T ss_pred             cchhc--ccc--ccccccccCCcccchhhHhhccCCccc--ccccccCCccCCCceehhhhhhhhhhhHHHHHHHHHHHH
Confidence            42221  000  011123455777899999988754332  334456789999999999999999999999999999999


Q ss_pred             HhchhhHHHHHHHhcCCCCCCcc-ccccccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHH
Q 011513          241 LVQQQTYVVFQALQSDRRVGNTH-FKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIF  319 (484)
Q Consensus       241 ~~q~~t~~~~q~~~~~~~~g~~g-~~i~~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i  319 (484)
                      +.|+.|.++.|+.+||++++  + +++|+++++.+..+.++++.|+++++++|+.+|+++++.+.++++|+++|++++.+
T Consensus       353 ~aq~~t~~v~Q~~~mdr~~~--~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig~G~~~si~  430 (571)
T KOG1237|consen  353 YAQMVTFFVLQATTMDRHLG--SNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIGIGLVLSIL  430 (571)
T ss_pred             HHhhhhheehhhhhcCCCCC--CCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhheeeccchHHHH
Confidence            99999999999999999997  5 99999999999999999999999999999999999876678999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHH
Q 011513          320 TMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGF  399 (484)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~  399 (484)
                      +|..++.+|.+|++.+.++       ....+++|++|++|||+++|+||+|.+++++||.|+|+|++||+..+++|+++.
T Consensus       431 sm~~aa~vE~krl~~~~~~-------~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~  503 (571)
T KOG1237|consen  431 SMAVAGIVEAKRLKTAVSL-------LVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTV  503 (571)
T ss_pred             HHHHHHHHHHHHhhhhhhc-------cCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHH
Confidence            9999999999999877541       123478999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHhhcccccCCCCCCCCC-cCccCchhHHHHHHHHHHHHHHHHHHHHhhhcccccCCCC
Q 011513          400 AISNYLNGFLISMVHRFTKGASTGDWLP-EDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGD  467 (484)
Q Consensus       400 ~iG~~lg~~l~~~~~~~~~~~~~~~w~~-~~ln~~~~~~~f~~la~l~~~~~i~~~~~~~~~~~~~~~~  467 (484)
                      ++|++++.+++.++...|+.  ..+|++ +++|++|+++|||+++.+..++...|..++++|++++.++
T Consensus       504 a~G~~lss~Lv~~v~~~t~~--~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~~~~~~~  570 (571)
T KOG1237|consen  504 AVGNYLSSVLVSLVQFSTGK--AAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYDYKDDKD  570 (571)
T ss_pred             HHHHHHHHHHHHHHHHhcCC--CcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeeeeccccC
Confidence            99999999999999887743  457999 9999999999999999999999999999999999987654

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=100.00  E-value=3.4e-48  Score=390.00  Aligned_cols=368  Identities=18%  Similarity=0.258  Sum_probs=283.1

Q ss_pred             hhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchh
Q 011513           32 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGI  111 (484)
Q Consensus        32 ~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i  111 (484)
                      .....+++++++|++|+|++|||++++++|||+++|+|    ||.+|++||+++|+|++++|++++++++++||+.+|.+
T Consensus       115 ~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dpr----rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~  190 (498)
T COG3104         115 SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPR----RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGL  190 (498)
T ss_pred             ccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcc----cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHH
Confidence            45778999999999999999999999999999999876    47899999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhccceeeecC--CCCCchhh---------H-HHHHHHHHHhccccCCCCCccccccCCCccccCCCC
Q 011513          112 PAFMMFLSCAMFFLGSRLYAKVK--PEGSPLAS---------T-VQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKL  179 (484)
Q Consensus       112 ~~~~~~l~~i~~l~~~~~~~~~~--p~~~pl~~---------~-~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (484)
                      ++++|.+++++|++++|++....  |+.+|.+.         + .+++....-.. +.         .            
T Consensus       191 aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~---------~------------  248 (498)
T COG3104         191 AAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLL-LN---------Q------------  248 (498)
T ss_pred             HHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHH-HH---------H------------
Confidence            99999999999999999886542  33333321         0 11111100000 00         0            


Q ss_pred             CCCCcccc-cccccccCCccccccCCCCCCCcccCcchhHHHHHHhHhhHHHHHHHHHHHHHHhchhhHHHHHH-HhcCC
Q 011513          180 PHTGQFRC-LDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQA-LQSDR  257 (484)
Q Consensus       180 ~~~~~~~~-l~~a~i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~-~~~~~  257 (484)
                         +..++ +....+........    ....+   .+.+ +||||+++++++++..++||+.|+|++|++.+|+ ++.|+
T Consensus       249 ---~~~~~~~~~~~i~~~~~~~~----~~~~~---~~~~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~  317 (498)
T COG3104         249 ---NTFSGVLLVISILIAIIYFA----EAFRS---PKVF-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNR  317 (498)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHH----HHhcc---CccH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcc
Confidence               00000 00000000000000    00111   2233 8899999999999999999999999999888887 66677


Q ss_pred             CCCCccccccccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 011513          258 RVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALS  337 (484)
Q Consensus       258 ~~g~~g~~i~~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~  337 (484)
                      +..  |+++|++|+|++||+++++++|+++++++|+.++    +++|+++.|+++|+++++++++++.......      
T Consensus       318 ~~~--g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~----~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~------  385 (498)
T COG3104         318 QIF--GFEVPPAWFQSLNPFFIILFSPILAALWTKLGRG----NKQPSTPIKFALGLILAGLGFLILLLAGIWF------  385 (498)
T ss_pred             ccc--ceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcC----CCCCCcchHHHHHHHHHHHHHHHHHHHHHhh------
Confidence            744  7999999999999999999999999998876655    2479999999999999999999998875421      


Q ss_pred             CCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccc
Q 011513          338 RPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFT  417 (484)
Q Consensus       338 ~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~  417 (484)
                       +       ++.+.+|+||++++|+++++||++++|+++|++++++|++++|++||.|+++.+.|+.+++.+.+.... +
T Consensus       386 -~-------~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~-~  456 (498)
T COG3104         386 -G-------GPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAV-T  456 (498)
T ss_pred             -c-------CCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccc-c
Confidence             1       113469999999999999999999999999999999999999999999999999999999888774221 1


Q ss_pred             cCCCCCCCCCcCccCchhHHHHHHHHHHHHHHHHHHHHhhhcccccCCC
Q 011513          418 KGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSG  466 (484)
Q Consensus       418 ~~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~i~~~~~~~~~~~~~~~  466 (484)
                      .         +..+......+|+.++...++..++....+++.+|...+
T Consensus       457 ~---------~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~~~r~~~~  496 (498)
T COG3104         457 D---------PAYTAFIEGRVFGTIGVVAIVIGILLLLLSPKLNRMMKG  496 (498)
T ss_pred             c---------hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhcC
Confidence            0         001111234689999999999999999999988776443

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=100.00  E-value=9.5e-41  Score=358.21  Aligned_cols=364  Identities=27%  Similarity=0.493  Sum_probs=296.5

Q ss_pred             hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecc-------cc
Q 011513           33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDV-------SW  105 (484)
Q Consensus        33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~-------g~  105 (484)
                      +...++++++++++|+|++|||++++++|||++++   +++++++|+|||+++|+|+++++++++++++++       ||
T Consensus        84 ~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~---~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~  160 (654)
T TIGR00926        84 HDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQ---LSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCY  160 (654)
T ss_pred             HHHHHHHHHHHHHhhccccccCchhhhHhhcCccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcch
Confidence            45668899999999999999999999999998643   234789999999999999999999999998543       69


Q ss_pred             cccchhhhHHHHHHHHHHHhccceeeecCCCCCchhhHHHHHHHHHHhccccCCCCCccccccCCCccccCCCCCCCCcc
Q 011513          106 AWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQF  185 (484)
Q Consensus       106 ~~~F~i~~~~~~l~~i~~l~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (484)
                      +++|++++++|++++++++.++|+|++.+|.++++.+..+++..+++++......                     ....
T Consensus       161 ~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~---------------------~~~~  219 (654)
T TIGR00926       161 PLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSE---------------------HWPL  219 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCc---------------------ccch
Confidence            9999999999999999999999999887888888888888888777654321110                     0013


Q ss_pred             cccccccccCCccccccCCCCCCCcccCcchhHHHHHHhHhhHHHHHHHHHHHHHHhchhhHHHHHHHhcCCCCCCcccc
Q 011513          186 RCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFK  265 (484)
Q Consensus       186 ~~l~~a~i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~~~~~~~~g~~g~~  265 (484)
                      +|+|++...                  ..+++++|+|++++++++++..++||..|+|+.+.+..|+.+||++++  ++.
T Consensus       220 ~~ld~a~~~------------------~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~~l~--g~~  279 (654)
T TIGR00926       220 HWLDYAKDK------------------HDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDGDVG--GFE  279 (654)
T ss_pred             hHHHHhccc------------------cccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcCccC--CEe
Confidence            566665321                  124568999999999999999999999999999999999999998887  889


Q ss_pred             ccccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhc---------
Q 011513          266 IPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLAL---------  336 (484)
Q Consensus       266 i~~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~---------  336 (484)
                      +|+++++++|++.++++.|+++..++|.++|.+   ..+++++|+++|++++++++++++++|.++++..+         
T Consensus       280 ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~---~~ls~l~k~~iG~~la~la~~va~~ve~~~~~~~~~~~~~~~~~  356 (654)
T TIGR00926       280 IQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCG---TRFTSLRKMAVGGLLAALSFFVAALVQLKVNPTLPEEPSANEIF  356 (654)
T ss_pred             cCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcC---CCCChHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcceE
Confidence            999999999999999999999998888887643   34889999999999999999999999987631100         


Q ss_pred             -------------------------------c-------------C---------------------------------C
Q 011513          337 -------------------------------S-------------R---------------------------------P  339 (484)
Q Consensus       337 -------------------------------~-------------~---------------------------------g  339 (484)
                                                     .             .                                 +
T Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (654)
T TIGR00926       357 LQVLNTDCTICDFSVLSKRVLPHDVYLHLDKKNTSGDQGLFTTKSSAKGWTLTYDLSYDGACGLTGNCPKTTDAHELEPK  436 (654)
T ss_pred             EEEecCCCCcceEEEEecCCcccccccccCccccccccccccccccccccceEEEEeccccccccCCCCccccceeecCC
Confidence                                           0             0                                 0


Q ss_pred             C---------cc-----------------------------c--------------------------------------
Q 011513          340 V---------GL-----------------------------E--------------------------------------  343 (484)
Q Consensus       340 ~---------~~-----------------------------~--------------------------------------  343 (484)
                      .         ..                             .                                      
T Consensus       437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  516 (654)
T TIGR00926       437 ISYVLLLSQGGYQLTANTDKPTDAKTEKGMGSVRLVNTLNGEFGMISLCTSDSDSVTPCNPRDPYDFYFRGTKYPANTCD  516 (654)
T ss_pred             ceEEEEEecCCcceeeeeecCccCCCCCCCceEEEEecCCCcceeeEEecccCcccccCCcccccccccccceeeeeecc
Confidence            0         00                             0                                      


Q ss_pred             --------------------------ccC------------CCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCc
Q 011513          344 --------------------------QRR------------GAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPE  385 (484)
Q Consensus       344 --------------------------~~~------------~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~  385 (484)
                                                ++.            .+++++|++|++|||++.++||++.+.+++|+.++++|+
T Consensus       517 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wq~pq~~~~~~~e~~~~~~~~e~~~~~~p~  596 (654)
T TIGR00926       517 RIDNAKSSTFLSNQLDMGIYYLIVITENSKIDELQAQIVELVSVNTVSILWQIPQYVILTAGEVLFSVTGLEFSYSQAPP  596 (654)
T ss_pred             cccccccccccccccccceEEEEEEcCCCCCCcceeEEEEecCCCceeHHHHHHHHHHHHHHHHHHHHHHHHhhHHhCcH
Confidence                                      000            024468999999999999999999999999999999999


Q ss_pred             hhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCcCccCchhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 011513          386 NMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWY  460 (484)
Q Consensus       386 ~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~i~~~~~~~~~  460 (484)
                      +||+..+++|.++.++|+.+...+...-...                 +....|.+++.++++..++|..+++.|
T Consensus       597 ~mks~~~a~~~~~~~~g~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~f~~~a~~Y  654 (654)
T TIGR00926       597 NMKSVLQALWLLTVAIGNLIVVVIAEFENFS-----------------VQAAEFFLFASLMLVVMAIFSILAYFY  654 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCh-----------------HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999987776542211                 123467788899999999999988765

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=100.00  E-value=6e-40  Score=341.26  Aligned_cols=370  Identities=15%  Similarity=0.177  Sum_probs=265.0

Q ss_pred             HHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhhhH
Q 011513           35 AFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAF  114 (484)
Q Consensus        35 ~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~~~  114 (484)
                      ..+++++.++++|.|+++||.+++++|+|+++|++    |+++|+++|+++|+|++++|.+++++++++||+++|.++++
T Consensus       101 ~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~----R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaai  176 (493)
T PRK15462        101 SFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPR----RDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAV  176 (493)
T ss_pred             hHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcc----ccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence            34677888899999999999999999999976543    47899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccceeeecCC-CCCchhh--HHHHH-----HH-----HHHhccccCCCCCccccccCCCccccCCCCCC
Q 011513          115 MMFLSCAMFFLGSRLYAKVKP-EGSPLAS--TVQVF-----VA-----AIKKRHLKLPEEPWLTLHNHIPKNCINSKLPH  181 (484)
Q Consensus       115 ~~~l~~i~~l~~~~~~~~~~p-~~~pl~~--~~~vl-----~~-----a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (484)
                      +|++++++++.++|++.+... +.+|.+.  ....+     ..     .......          .+.            
T Consensus       177 gm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~------------  234 (493)
T PRK15462        177 GMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLF----------WKE------------  234 (493)
T ss_pred             HHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH----------HHH------------
Confidence            999999999888877654211 1122211  00000     00     0000000          000            


Q ss_pred             CCccccccc-ccccCCccccccCCCCCCCcccCcchhHHHHHHhHhhHHHHHHHHHHHHHHhchhhHHHHHH-HhcCCCC
Q 011513          182 TGQFRCLDK-AAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQA-LQSDRRV  259 (484)
Q Consensus       182 ~~~~~~l~~-a~i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~-~~~~~~~  259 (484)
                        ....+-. ..+... ..        ..+...+..+.+||||+..++++++..++||+.|+|.++++...+ +++|+++
T Consensus       235 --~~~~~~~~~~~~~~-~~--------~~~~~~~~~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~  303 (493)
T PRK15462        235 --WSVYALIVATIIGL-GV--------LAKIYRKAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDM  303 (493)
T ss_pred             --HHHHHHHHHHHHHH-HH--------HHHHHHhcCCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchh
Confidence              0000000 000000 00        000000112347899999999999999999999999999775555 8899998


Q ss_pred             CCccccccccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCC
Q 011513          260 GNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRP  339 (484)
Q Consensus       260 g~~g~~i~~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g  339 (484)
                      +  |+++|++|+|++||++|+++.|++.++    |+|+.+++++|+.++|+++|+++.++||+++.+....    ...+ 
T Consensus       304 ~--g~~ip~~~~qslNp~~ii~l~P~~a~l----w~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~----~~~~-  372 (493)
T PRK15462        304 F--GYTVPTAMFQSINAFAVMLCGVFLAWV----VKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARW----SAMY-  372 (493)
T ss_pred             c--ceeeCHHHHHhHhHHHHHHHHHHHHHH----HHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhh----cCCC-
Confidence            7  999999999999999999999999996    5555444557999999999999999999999876542    1111 


Q ss_pred             CcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHH-HHHHHHHHHHhHhhccccc
Q 011513          340 VGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGF-AISNYLNGFLISMVHRFTK  418 (484)
Q Consensus       340 ~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~-~iG~~lg~~l~~~~~~~~~  418 (484)
                                ..+|++|++..|+++|+||++.+|.+++++++++|++++|++||+|++.. ++|+.+++.+.+.....+.
T Consensus       373 ----------~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~  442 (493)
T PRK15462        373 ----------GHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASF  442 (493)
T ss_pred             ----------CCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence                      24899999999999999999999999999999999999999999999955 8999999999887743210


Q ss_pred             CCCCCCCCCcCccCchhHHHHHHHHHHHHHH--HHHHHHhhhcccccCCC
Q 011513          419 GASTGDWLPEDLNKGRLDYFYYLVAALGLLN--FGFFLLCAKWYKYKGSG  466 (484)
Q Consensus       419 ~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~--~i~~~~~~~~~~~~~~~  466 (484)
                      .. ... ..+  +..++..+|..++.++++.  .+.+....+..|.|+|.
T Consensus       443 ~~-~~~-~~~--~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  488 (493)
T PRK15462        443 DA-SGA-INY--SINAYIEVFDQITWGALACVGVVLMIWLYQALKFRNRA  488 (493)
T ss_pred             Cc-ccc-ccc--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            00 000 000  1113566788878766655  34445555555666554

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=100.00  E-value=1.1e-42  Score=354.69  Aligned_cols=352  Identities=33%  Similarity=0.553  Sum_probs=241.7

Q ss_pred             eeeehhhhcccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHH
Q 011513            2 LVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWY   81 (484)
Q Consensus         2 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~   81 (484)
                      ++|+++++.+.+               +++.+.+++++||+++++|+|++|||++++++|||+++++   ++++++|+||
T Consensus        16 ~ll~l~~~~~~~---------------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~---~~~~~~F~~f   77 (372)
T PF00854_consen   16 VLLTLSAIPPSL---------------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDD---SRRDSFFNWF   77 (372)
T ss_dssp             HH--HHHTSSSC---------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTT---THHHHHHHHH
T ss_pred             HHhHHHHhcchh---------------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccch---hhhhhhHHHH
Confidence            346666666655               3445678999999999999999999999999999998642   3478999999


Q ss_pred             HHhhhHHHHHHhhhheeeeecccccccchhhhHHHHHHHHHHHhccceeeec-CCCCCchhh-HHHHHHHHHHhccccCC
Q 011513           82 YFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKV-KPEGSPLAS-TVQVFVAAIKKRHLKLP  159 (484)
Q Consensus        82 Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~~~~~~l~~i~~l~~~~~~~~~-~p~~~pl~~-~~~vl~~a~~~~~~~~~  159 (484)
                      ||++|+|+++++.+++++++++||+++|++++++|++++++|+.++++|++. +|.++++.. ...++..+.+++....+
T Consensus        78 Y~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (372)
T PF00854_consen   78 YWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIKLVLVAAFKKRKLAVP  157 (372)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SHHHHHHHHHHHCCCH-
T ss_pred             HHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHHHHHHHHHHHhhcccc
Confidence            9999999999999999999999999999999999999999999999999887 677888877 44555555555544332


Q ss_pred             CCCccccccCCCccccCCCCCCCCcccccccccccCCccccccCCCCCCCcc-cCcchhHHHHHHhHhhHHHHHHHHHHH
Q 011513          160 EEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWR-LSSMQKVEEVKVLIRVIPIWASAIVYY  238 (484)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~i~~~~~~~~~~g~~~~~~~-~~~~~~v~~~k~~~~~l~l~~~~~~~~  238 (484)
                      .... ..+....... .....  ... ...++.......        ...|. .++++++++.|.+.+.++.+...++|+
T Consensus       158 ~~~~-~~~~~~~~~~-~~~~~--~~~-~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~k~~~~~~~~~~~~i~~~  224 (372)
T PF00854_consen  158 KGSS-WLDWALFQYS-ERSIF--GII-VFIRAAVIFFPE--------IFFWALFCQVQRVEELKALIRFLPIFLFWIFYW  224 (372)
T ss_dssp             HHHH-HHHHHHHHHC-CCCCC--CCC-CHHHHHHHHCCC--------HHHHTTTSSTTTHHHCCHHHCHHHCCCHHHHHH
T ss_pred             cchH-HHHHhhhhhh-hhhhh--hhh-hhccchhhhhhh--------hhhcccCCccceeeeeeeeeeccccCeEEEEee
Confidence            1110 0000000000 00000  000 000111000000        00111 145678899999999999999999999


Q ss_pred             HHHhchhhHHHHHHHhcCCCCCCcc-ccccccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHH
Q 011513          239 VALVQQQTYVVFQALQSDRRVGNTH-FKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILA  317 (484)
Q Consensus       239 ~~~~q~~t~~~~q~~~~~~~~g~~g-~~i~~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~  317 (484)
                      .++.|..+....|..++|+.++  + +++|+++++++|+++++++.|+++++++|+.++    ++++++++|+++|++++
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~--~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~----~~~~~~~~k~~~G~~~~  298 (372)
T PF00854_consen  225 QMYSQLNTFFLLQVPQMDRGIG--GLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRR----GIQPSPPQKFGIGMVFA  298 (372)
T ss_dssp             HHCTCCHHHHHHCGGGTTT-SS--------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT----------HHHHHHH-HHH
T ss_pred             ehhhhhhhHHHHhccccccccc--cccccccchhhhHHHHHHHHHHHHHHHHHhHHhhh----cccchhhhhhhHHHHHH
Confidence            9999998888888888988887  7 899999999999999999999999999999882    33689999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHH
Q 011513          318 IFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFV  397 (484)
Q Consensus       318 ~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l  397 (484)
                      ++++++.+.++.+|......+|           ..+.+|+++.|++++++|.+.++++.+..++.+|+++++.++|+|+.
T Consensus       299 ~~~~~~~~~v~~~r~~~~~~~~-----------~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m~~~~~~  367 (372)
T PF00854_consen  299 ILAMFVAAIVEIRRLCYAQPCG-----------KVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSMMGIWFA  367 (372)
T ss_dssp             HHHHHTTTHHHH---HH----T-----------T--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSSTHHHHH
T ss_pred             HHHHHHHHHHHhhhhhcccccC-----------CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHHHHHHHH
Confidence            9999999999987765554443           45669999999999999999999999999999999999999999888


Q ss_pred             HHHH
Q 011513          398 GFAI  401 (484)
Q Consensus       398 ~~~i  401 (484)
                      ....
T Consensus       368 ~~~~  371 (372)
T PF00854_consen  368 LSAF  371 (372)
T ss_dssp             HH--
T ss_pred             Hhcc
Confidence            6653

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=100.00  E-value=5.3e-37  Score=322.88  Aligned_cols=370  Identities=14%  Similarity=0.197  Sum_probs=273.1

Q ss_pred             HHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhhhHH
Q 011513           36 FLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFM  115 (484)
Q Consensus        36 ~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~~~~  115 (484)
                      .+++++.++++|+|+++||..++++|+||++++|    ++++|+++|+++|+|+++||.+++++.+++||+++|++++++
T Consensus       107 ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~----~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~  182 (489)
T PRK10207        107 LIFIALGTIAVGNGLFKANPASLLSKCYPPKDPR----LDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAG  182 (489)
T ss_pred             HHHHHHHHHHhccccccCCHHHHHHHhcCCCchh----hhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH
Confidence            4778999999999999999999999999876422    467999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccceeeec--CCCCCchh--hHHHH------HHHHHHhccccCCCCCccccccCCCccccCCCCCCCCcc
Q 011513          116 MFLSCAMFFLGSRLYAKV--KPEGSPLA--STVQV------FVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQF  185 (484)
Q Consensus       116 ~~l~~i~~l~~~~~~~~~--~p~~~pl~--~~~~v------l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (484)
                      ++++++.++..++++++.  +|++++..  .....      +........ +.. ..                      .
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~-~~~-~~----------------------~  238 (489)
T PRK10207        183 LIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLM-HNV-EV----------------------A  238 (489)
T ss_pred             HHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHH-hhh-hH----------------------H
Confidence            999888888887776543  23333321  11000      000100000 000 00                      0


Q ss_pred             cc-cccccccCCccccccCCCCCCCcccCcchhHHHHHHhHhhHHHHHHHHHHHHHHhchhhHHHHHHH-hcCCCCCCcc
Q 011513          186 RC-LDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQAL-QSDRRVGNTH  263 (484)
Q Consensus       186 ~~-l~~a~i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~~-~~~~~~g~~g  263 (484)
                      .+ +....+....         ...++..+ .+..++++.+..+++++..++||+.|+|..+.+.++.. ++|++..  |
T Consensus       239 ~~~~~~~~~i~~~---------~f~~~~~~-~~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~--G  306 (489)
T PRK10207        239 NLVLIVLSIVVTI---------IFFREAFK-LDKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEIL--G  306 (489)
T ss_pred             HHHHHHHHHHHHH---------HHHHHHhc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhcccccc--c
Confidence            00 0000000000         00000001 12345677777788888899999999999887777664 6777765  8


Q ss_pred             ccccccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCccc
Q 011513          264 FKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLE  343 (484)
Q Consensus       264 ~~i~~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~  343 (484)
                      +.+|+++++++|++.++++.|+.+++    ++|+++|+.++++++|+++|+++.+++++++++.+...   ...+     
T Consensus       307 ~~i~~~~~~~~n~~~iii~~pl~~~l----~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~---~~~~-----  374 (489)
T PRK10207        307 FSINPVSFQALNPFWVVVASPILAGI----YTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWF---ADAQ-----  374 (489)
T ss_pred             eEECHHHHHhHhHHHHHHHHHHHHHH----HHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhh---cCCC-----
Confidence            99999999999999999999998874    56666666679999999999999999998876544311   0011     


Q ss_pred             ccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCC
Q 011513          344 QRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTG  423 (484)
Q Consensus       344 ~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~  423 (484)
                            ..+|+||+++.|++.|+||++.+|++++++++.+|++++|.+||+|+++.++|+.+|+.+++.+.....     
T Consensus       375 ------~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~-----  443 (489)
T PRK10207        375 ------GLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDN-----  443 (489)
T ss_pred             ------CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----
Confidence                  247899999999999999999999999999999999999999999999999999999999887642111     


Q ss_pred             CCCCcCc-cCchhHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCc
Q 011513          424 DWLPEDL-NKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAP  470 (484)
Q Consensus       424 ~w~~~~l-n~~~~~~~f~~la~l~~~~~i~~~~~~~~~~~~~~~~~~~  470 (484)
                      ..  |.. .+.++..+|..+++.+++..++++++.|+++|..++||+|
T Consensus       444 ~~--~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  489 (489)
T PRK10207        444 IT--DPLETLPVYTNVFGKIGLVTLGVAVVMALMVPWLNRMINTPESH  489 (489)
T ss_pred             cc--cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence            00  110 0123577999999999999999999999999998888875

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=100.00  E-value=4.3e-36  Score=315.52  Aligned_cols=361  Identities=14%  Similarity=0.190  Sum_probs=264.4

Q ss_pred             HHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhhh
Q 011513           34 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPA  113 (484)
Q Consensus        34 ~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~~  113 (484)
                      ...+++++.++++|.|+++|+..++++|+++++++++   ++++|+++|++.|+|+++||.+++++++++||+++|.+++
T Consensus       102 ~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~---r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~  178 (475)
T TIGR00924       102 PDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPR---RDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAA  178 (475)
T ss_pred             HhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCccc---ccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence            4567889999999999999999999999998764222   4679999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccceeeecCCCCCchhhH-----HH--H----HHHHHHhccccCCCCCccccccCCCccccCCCCCCC
Q 011513          114 FMMFLSCAMFFLGSRLYAKVKPEGSPLAST-----VQ--V----FVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHT  182 (484)
Q Consensus       114 ~~~~l~~i~~l~~~~~~~~~~p~~~pl~~~-----~~--v----l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (484)
                      +.++++.+++++.++.+++.++++++....     .+  .    +....+.... ......    .+             
T Consensus       179 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~-------------  240 (475)
T TIGR00924       179 VGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWL-MHHVVI----AN-------------  240 (475)
T ss_pred             HHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHH-HhccHH----HH-------------
Confidence            999998888888877776544333322110     00  0    0000000000 000000    00             


Q ss_pred             CcccccccccccCCccccccCCCCCCCcccCcchhHHHHHHhHhhHHHHHHHHHHHHHHhchhhHHH-HHHHhcCCCCCC
Q 011513          183 GQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVV-FQALQSDRRVGN  261 (484)
Q Consensus       183 ~~~~~l~~a~i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~-~q~~~~~~~~g~  261 (484)
                      ........+......... .     ++    +.+ .+++++..+++++++..++||++|+|+.+++. ++.+++|++++ 
T Consensus       241 ~~~~~~~~~~~~~~~~~~-~-----~~----~~~-~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~-  308 (475)
T TIGR00924       241 ILLMTVTLAVIIFFFRLA-F-----KP----RLD-AVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEML-  308 (475)
T ss_pred             HHHHHHHHHHHHHHHHHH-H-----hc----cCC-HHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-
Confidence            000000000000000000 0     00    112 23455556789999999999999999999664 55677898877 


Q ss_pred             ccccccccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCc
Q 011513          262 THFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVG  341 (484)
Q Consensus       262 ~g~~i~~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~  341 (484)
                       ++++|+++++++|++.+++++|+++++    ++++.+|+.+++...|+++|+++++++++.+++....    ...    
T Consensus       309 -~~~ip~~~~~~~n~~~iil~~p~~~~~----~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~----~~~----  375 (475)
T TIGR00924       309 -GMSVPVIWFQSLNPFWVVVGSPVLAMI----WTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWF----ADA----  375 (475)
T ss_pred             -ceEECHHHHHhhhHHHHHHHHHHHHHH----HHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhh----cCC----
Confidence             889999999999999999999998875    4444444456889999999999999999998876321    111    


Q ss_pred             ccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCC
Q 011513          342 LEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGAS  421 (484)
Q Consensus       342 ~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~  421 (484)
                             ..++|+||++++|+++|+||++.+|++++++++++|+++||+++|++.+..++|+.+++.++.......    
T Consensus       376 -------~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~----  444 (475)
T TIGR00924       376 -------GGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQ----  444 (475)
T ss_pred             -------CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----
Confidence                   135899999999999999999999999999999999999999999999999999999999987754321    


Q ss_pred             CCCCCCcCccCchhHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 011513          422 TGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYK  463 (484)
Q Consensus       422 ~~~w~~~~ln~~~~~~~f~~la~l~~~~~i~~~~~~~~~~~~  463 (484)
                        +          ...+|..+++++++..++++++.|+++|.
T Consensus       445 --~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~k~  474 (475)
T TIGR00924       445 --G----------VTGVFGKIGLVTLLVGVVMALMVPWLNRM  474 (475)
T ss_pred             --c----------hhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence              1          24578888888888888898888887763

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=100.00  E-value=3.2e-35  Score=310.66  Aligned_cols=369  Identities=15%  Similarity=0.220  Sum_probs=269.3

Q ss_pred             HHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhhh
Q 011513           34 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPA  113 (484)
Q Consensus        34 ~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~~  113 (484)
                      ...+++++.++++|.|+++|+..++++|+|++++++    ++++++++|+++|+|+++||.+++++.+++||+++|++++
T Consensus       112 ~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~----~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~  187 (500)
T PRK09584        112 AGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPR----LDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSV  187 (500)
T ss_pred             HHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchh----hhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence            456788999999999999999999999999865422    3568999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccceeeec--CCCCCchhh--H----HHHHHHHHHhcc-ccCCCCCccccccCCCccccCCCCCCCCc
Q 011513          114 FMMFLSCAMFFLGSRLYAKV--KPEGSPLAS--T----VQVFVAAIKKRH-LKLPEEPWLTLHNHIPKNCINSKLPHTGQ  184 (484)
Q Consensus       114 ~~~~l~~i~~l~~~~~~~~~--~p~~~pl~~--~----~~vl~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (484)
                      +.++++++.+++.++.+++.  +|+++|...  .    ..+......... .+.+.                       .
T Consensus       188 i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~  244 (500)
T PRK09584        188 VGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQE-----------------------I  244 (500)
T ss_pred             HHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcch-----------------------H
Confidence            99999988877776666543  233233211  1    011111100000 00000                       0


Q ss_pred             ccc-cccccccCCccccccCCCCCCCcccCcchhHHHHHHhHhhHHHHHHHHHHHHHHhchhhHHHHHH-HhcCCCCCCc
Q 011513          185 FRC-LDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQA-LQSDRRVGNT  262 (484)
Q Consensus       185 ~~~-l~~a~i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~-~~~~~~~g~~  262 (484)
                      .+. +-...+....          ..++...+.+.+|+++.+..+++++..++||++|.|+++.+..|+ +++|++..  
T Consensus       245 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~--  312 (500)
T PRK09584        245 ARMALGVVALGIVV----------IFGKEAFAMKGAARRKMIVAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSIL--  312 (500)
T ss_pred             HHHHHHHHHHHHHH----------HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcccccc--
Confidence            000 0000000000          000000011235677777778888999999999999999887776 45777766  


Q ss_pred             cccccccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcc
Q 011513          263 HFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGL  342 (484)
Q Consensus       263 g~~i~~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~  342 (484)
                      |+.+|+++++++|++.+++++|+++++    ++|+.+|   +++.+|+++|+++.+++++++++....    ..+     
T Consensus       313 g~~i~~~~~~s~n~i~iil~~p~~~~~----~~~l~~r---~~~~~~~~~G~~l~~l~f~~l~~~~~~----~~~-----  376 (500)
T PRK09584        313 GIAVEPEQYQALNPFWIMIGSPILAAI----YNKMGDR---LPMPHKFAIGMVLCSGAFLVLPLGAKF----AND-----  376 (500)
T ss_pred             ceEECHHHHHHHhHHHHHHHHHHHHHH----HHHhCcC---CCcHHHHHHHHHHHHHHHHHHHHHHHh----cCC-----
Confidence            889999999999999999999999885    5665443   678999999999999999998876542    111     


Q ss_pred             cccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCC
Q 011513          343 EQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGAST  422 (484)
Q Consensus       343 ~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~  422 (484)
                            ...+|.+|++++|+++|+||++++|.+++++++++|+++||++||+|+++.++|+.+++.+.+.+.....    
T Consensus       377 ------~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~----  446 (500)
T PRK09584        377 ------AGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDN----  446 (500)
T ss_pred             ------CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc----
Confidence                  2358999999999999999999999999999999999999999999999999999999999876542110    


Q ss_pred             CCCCCcCcc-CchhHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCc
Q 011513          423 GDWLPEDLN-KGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAP  470 (484)
Q Consensus       423 ~~w~~~~ln-~~~~~~~f~~la~l~~~~~i~~~~~~~~~~~~~~~~~~~  470 (484)
                         ..+... .+.+..+|..+++++++..++++++.|+.+|..++|+++
T Consensus       447 ---~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~k~~~~~~~~  492 (500)
T PRK09584        447 ---VTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAPKLNRMTQDDSAD  492 (500)
T ss_pred             ---cccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence               001111 112567888899998888889999999999987777643

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.54  E-value=1e-12  Score=136.08  Aligned_cols=308  Identities=12%  Similarity=-0.010  Sum_probs=177.8

Q ss_pred             hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhh
Q 011513           33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP  112 (484)
Q Consensus        33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~  112 (484)
                      +...+++.+++.+++.|...|...+.+.|.+++++      +.++.++.+++.++|..+|+.+++++.+..+|++.|.+.
T Consensus       109 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~  182 (417)
T PRK10489        109 SLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLA  182 (417)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHH
Confidence            45667788888899988888988999999887532      356788888999999999999999998888999999988


Q ss_pred             hHHHHHHHHHHHhccceeeecCCCCCchhhHHHHHHHHHHhccccCCCCCccccccCCCccccCCCCCCCCccccccccc
Q 011513          113 AFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAA  192 (484)
Q Consensus       113 ~~~~~l~~i~~l~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~  192 (484)
                      ++..+++.+..+.. +.   .+|+..+              +.     +..                     .+..+   
T Consensus       183 ~~~~~~~~~~~~~l-~~---~~~~~~~--------------~~-----~~~---------------------~~~~~---  215 (417)
T PRK10489        183 AAGTFITLLPLLRL-PA---LPPPPQP--------------RE-----HPL---------------------RSLLA---  215 (417)
T ss_pred             HHHHHHHHHHHHhC-CC---CCCCCcc--------------cc-----cch---------------------HHHHH---
Confidence            77776665443321 11   1111000              00     000                     00000   


Q ss_pred             ccCCccccccCCCCCCCcccCcchhHHHHHHhHhhHHHHHHHHHHHHHHhchhhHHHHHHHhcCCCCCCccccccccccc
Q 011513          193 IMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYA  272 (484)
Q Consensus       193 i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~~~~~~~~g~~g~~i~~~~~~  272 (484)
                                      .+     ..+...+.+.   .+++..... .......+.+.....+ ..+..   - --.+++.
T Consensus       216 ----------------~~-----~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~p~~~~~-~~g~~---~-~~~g~~~  265 (417)
T PRK10489        216 ----------------GF-----RFLLASPVVG---GIALLGGLL-TMASAVRVLYPALADE-VWQMG---A-AQIGLLY  265 (417)
T ss_pred             ----------------HH-----HHHHcChHHH---HHHHHHHHH-HHHHhHHHhhHHHHHh-ccCCC---h-hHhHHHH
Confidence                            00     0000001111   111111111 1111111111111111 01111   0 0134445


Q ss_pred             hhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccc
Q 011513          273 IFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSL  352 (484)
Q Consensus       273 ~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  352 (484)
                      +...+..++...+.+++    .+|       .+..+-+.++.++.+++++.....                        .
T Consensus       266 ~~~~~g~~ig~~~~~~l----~~~-------~~~~~~l~~~~~~~~~~~~~~~~~------------------------~  310 (417)
T PRK10489        266 AAVPLGAALGALTSGWL----AHS-------ARPGLLMLLSTLGSFLAVGLFGLM------------------------P  310 (417)
T ss_pred             HHHHHHHHHHHHHHHHh----hhc-------cCcchHHHHHHHHHHHHHHHHHcc------------------------c
Confidence            55555556655554443    121       112233556666666665544332                        1


Q ss_pred             hHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCcCccC
Q 011513          353 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNK  432 (484)
Q Consensus       353 s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~ln~  432 (484)
                      +.+......++.+++.....+...+++.+.+|++.||..+|++.....+|..+|+.+.+.+.+..+              
T Consensus       311 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g--------------  376 (417)
T PRK10489        311 MWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMT--------------  376 (417)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhc--------------
Confidence            233344566778888888888888999999999999999999999999999999999988764321              


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccccc
Q 011513          433 GRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAPEVAM  474 (484)
Q Consensus       433 ~~~~~~f~~la~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  474 (484)
                        ....++..+++.++..++.....+++|+++.||-+.|.++
T Consensus       377 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (417)
T PRK10489        377 --PVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEVDASD  416 (417)
T ss_pred             --hhhHHHHHHHHHHHHHHHHHHhcccccccccccccCCCCC
Confidence              1235555666666666666666677777766665555543

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.44  E-value=6.8e-12  Score=129.35  Aligned_cols=289  Identities=12%  Similarity=0.119  Sum_probs=172.1

Q ss_pred             hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhh
Q 011513           33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP  112 (484)
Q Consensus        33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~  112 (484)
                      +.+.+++++++.+++.|.+.|...+.+.|.+++++      +.+++++.+...++|..+||.+++++. ++||++.|++.
T Consensus        98 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~  170 (400)
T PRK11646         98 EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATG  170 (400)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHH
Confidence            45678889999999999999999999999987532      467999999999999999999999998 68999999988


Q ss_pred             hHHHHHHHHHHHhccceeeecCCCCCchhhHHHHHHHHHHhccccCCCCCccccccCCCccccCCCCCCCCccccccccc
Q 011513          113 AFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAA  192 (484)
Q Consensus       113 ~~~~~l~~i~~l~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~  192 (484)
                      ++..++..++.....+..   ++  ++...       ..++                                       
T Consensus       171 ~~~~~~~~i~~~~~~~~~---~~--~~~~~-------~~~~---------------------------------------  199 (400)
T PRK11646        171 AVLFVLAAAFNAWLLPAY---KL--STVRT-------PVRE---------------------------------------  199 (400)
T ss_pred             HHHHHHHHHHHHHhCCcc---cc--cccch-------hhHH---------------------------------------
Confidence            877766654433221110   00  00000       0000                                       


Q ss_pred             ccCCccccccCCCCCCCcccCcchhHHHHHHhHhhHHHHHHHHHHHHHHhchhhHHHHHHHhcCCCCCCccccccccccc
Q 011513          193 IMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYA  272 (484)
Q Consensus       193 i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~~~~~~~~g~~g~~i~~~~~~  272 (484)
                                      .++    .-..+ +++.   .+.+....++..+.|..........+   . +  +.....+++.
T Consensus       200 ----------------~~~----~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~p~~~~~---~-~--~~~~~~g~l~  249 (400)
T PRK11646        200 ----------------GMT----RVLRD-KRFV---TYVLTLTGYYMLAVQVMLMLPIMVND---I-A--GSPSAVKWMY  249 (400)
T ss_pred             ----------------HHH----HHHcC-chHH---HHHHHHHHHHHHHHHHHHhhhhhHHh---h-c--CCchHHHHHH
Confidence                            000    00001 1111   11111222333333322211111111   0 1  0001123444


Q ss_pred             hhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccc
Q 011513          273 IFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSL  352 (484)
Q Consensus       273 ~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  352 (484)
                      +++.+..+.......++    ..|   |   .+..+++..|.++.++++...+..+                        
T Consensus       250 ~~~~~~~~~~~~~~~~~----~~~---r---~~~~~~~~~~~~~~~~~~~~l~~~~------------------------  295 (400)
T PRK11646        250 AIEACLSLTLLYPIARW----SEK---R---FRLEHRLMAGLLIMSLSMFPIGMVS------------------------  295 (400)
T ss_pred             HHHHHHHHHHHHHHHHH----HHH---h---cchhHHHHHHHHHHHHHHHHHHHhh------------------------
Confidence            55554444333222332    111   1   2234457777777777766554432                        


Q ss_pred             hHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCcCccC
Q 011513          353 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNK  432 (484)
Q Consensus       353 s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~ln~  432 (484)
                      +.++++...++.++|+.+..|...+.+.+.+|++.+|.++|+.++..++|..+|+.+++++.+.++.          .+ 
T Consensus       296 ~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~----------~~-  364 (400)
T PRK11646        296 NLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKA----------LN-  364 (400)
T ss_pred             hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhh----------cC-
Confidence            1233444556788999999999999999999999999999999999999999999999998764310          01 


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHH
Q 011513          433 GRLDYFYYLVAALGLLNFGFFLL  455 (484)
Q Consensus       433 ~~~~~~f~~la~l~~~~~i~~~~  455 (484)
                       .....|...++++++..+.+..
T Consensus       365 -~~~~~~~~~~~~~~~~~~~~~~  386 (400)
T PRK11646        365 -QPELPWMMLGIIGLITLLALYW  386 (400)
T ss_pred             -CcchHHHHHHHHHHHHHHHHHH
Confidence             1234556666666666555443

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.42  E-value=8.5e-11  Score=120.77  Aligned_cols=278  Identities=15%  Similarity=0.105  Sum_probs=162.9

Q ss_pred             hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhh
Q 011513           33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP  112 (484)
Q Consensus        33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~  112 (484)
                      +...+++++.+.++|.+...|+..+.+.|++++++      |.++++++..+.++|..+|+.+++++.+.+||++.|++.
T Consensus       111 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~  184 (399)
T PRK05122        111 SLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------TGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLI  184 (399)
T ss_pred             HHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------hccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence            45678889999999999999999999999987532      245788888999999999999999988889999888776


Q ss_pred             hHHHHHHHHHHHhccceeeecCCCCCchhhHHHHHHHHHHhccccCCCCCccccccCCCccccCCCCCCCCccccccccc
Q 011513          113 AFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAA  192 (484)
Q Consensus       113 ~~~~~l~~i~~l~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~  192 (484)
                      ++..++..+   +.++     .|+..+..                 .  +.                             
T Consensus       185 ~~~~~~~~~---~~~~-----~~~~~~~~-----------------~--~~-----------------------------  208 (399)
T PRK05122        185 MLLALLGLL---LARP-----RPAVPPVK-----------------G--ER-----------------------------  208 (399)
T ss_pred             HHHHHHHHH---HHhc-----CCCCCCCC-----------------c--cc-----------------------------
Confidence            554433322   1111     11110000                 0  00                             


Q ss_pred             ccCCccccccCCCCCCCcccCcchhHHHHHHhHhhHHHHHHHHHHHHHHhchhhHHHHHHHhcCCCCCCccccccccccc
Q 011513          193 IMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYA  272 (484)
Q Consensus       193 i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~~~~~~~~g~~g~~i~~~~~~  272 (484)
                                     .++       .+..|+.......+   ..+...+....+.......+  .+..      ..+...
T Consensus       209 ---------------~~~-------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~------~~~~~~  255 (399)
T PRK05122        209 ---------------LPF-------RRVLGRVWPYGMGL---ALASIGFGTIATFITLYYAA--RGWD------GAALAL  255 (399)
T ss_pred             ---------------hhH-------HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--cccc------cchHHH
Confidence                           000       01111111111111   11111111111111111111  1111      112223


Q ss_pred             hhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccc
Q 011513          273 IFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSL  352 (484)
Q Consensus       273 ~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  352 (484)
                      ....+..++..++.+++    .+|.       +..+.+.++.++.+++++.....                        .
T Consensus       256 ~~~~~~~~~~~~~~g~l----~~r~-------~~~~~~~~~~~~~~~~~~~~~~~------------------------~  300 (399)
T PRK05122        256 TLFGVAFVGARLLFGNL----INRL-------GGLRVAIVSLLVEILGLLLLWLA------------------------P  300 (399)
T ss_pred             HHHHHHHHHHHHHHHHH----HHHh-------ccHHHHHHHHHHHHHHHHHHHHh------------------------c
Confidence            34444445555554443    2332       22334556667777766555442                        1


Q ss_pred             hHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCcCccC
Q 011513          353 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNK  432 (484)
Q Consensus       353 s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~ln~  432 (484)
                      +.++++...++.|++.....|.....+.+..|++.||..+|+++....+|..+++.+.+.+.+..               
T Consensus       301 ~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~---------------  365 (399)
T PRK05122        301 SPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWF---------------  365 (399)
T ss_pred             cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---------------
Confidence            23345566788999998888888888888999999999999999999999998888887765321               


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHh
Q 011513          433 GRLDYFYYLVAALGLLNFGFFLLC  456 (484)
Q Consensus       433 ~~~~~~f~~la~l~~~~~i~~~~~  456 (484)
                       .+...|+..++++++..++..+.
T Consensus       366 -g~~~~~~~~~~~~~~~~~~~~~~  388 (399)
T PRK05122        366 -GYPSIFLAAALAALLGLALTWLL  388 (399)
T ss_pred             -CHHHHHHHHHHHHHHHHHHHHHh
Confidence             13456666666666665554443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.39  E-value=1.2e-10  Score=120.07  Aligned_cols=85  Identities=14%  Similarity=-0.033  Sum_probs=69.6

Q ss_pred             hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhh
Q 011513           33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP  112 (484)
Q Consensus        33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~  112 (484)
                      +...+++++++.+++.+...|...+.+.|.+++++      +.+..++.+...++|..++|.+++++.++.+|++.|++.
T Consensus       100 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~  173 (406)
T PRK15402        100 SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------AIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLF  173 (406)
T ss_pred             cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHH
Confidence            45678888999999999988988999999987532      345677788888899999999999998889999999988


Q ss_pred             hHHHHHHHHHH
Q 011513          113 AFMMFLSCAMF  123 (484)
Q Consensus       113 ~~~~~l~~i~~  123 (484)
                      ++..+++.+..
T Consensus       174 ~~~~~~~~~~~  184 (406)
T PRK15402        174 AALAALSFFGL  184 (406)
T ss_pred             HHHHHHHHHHH
Confidence            87777766543

>PRK03545 putative arabinose transporter; Provisional

Probab=99.39  E-value=5.4e-11  Score=122.03  Aligned_cols=286  Identities=13%  Similarity=0.039  Sum_probs=170.1

Q ss_pred             hhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchh
Q 011513           32 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGI  111 (484)
Q Consensus        32 ~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i  111 (484)
                      .+...+++++.+.+++.+.+.|...+++.|++++++      |.++++++..+.++|.+++|.+++++.+++||++.|.+
T Consensus        95 ~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~  168 (390)
T PRK03545         95 WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK------KAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLA  168 (390)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh------hhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHH
Confidence            356778889999999999999999999999998532      35688899999999999999999999888999999999


Q ss_pred             hhHHHHHHHHHHHhccceeeecCCCCCchhhHHHHHHHHHHhccccCCCCCccccccCCCccccCCCCCCCCcccccccc
Q 011513          112 PAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKA  191 (484)
Q Consensus       112 ~~~~~~l~~i~~l~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  191 (484)
                      .++..++..+......++    +|++++- . .       +                                    +. 
T Consensus       169 ~~~~~~l~~~~~~~~~~~----~~~~~~~-~-~-------~------------------------------------~~-  198 (390)
T PRK03545        169 IGGGALITLLLLIKLLPL----LPSEHSG-S-L-------K------------------------------------SL-  198 (390)
T ss_pred             HHHHHHHHHHHHHHhCCC----CCCCCcc-h-H-------H------------------------------------HH-
Confidence            887766655443322111    1110000 0 0       0                                    00 


Q ss_pred             cccCCccccccCCCCCCCcccCcchhHHHHHHhHh-hHHHHHHHHHHHHHHhchhhHHHHHHHhcCCCCCCccccccccc
Q 011513          192 AIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIR-VIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAAS  270 (484)
Q Consensus       192 ~i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~-~l~l~~~~~~~~~~~~q~~t~~~~q~~~~~~~~g~~g~~i~~~~  270 (484)
                                              .+.-..+.+.. .+..++....++..+..... +.....+++..        ..++
T Consensus       199 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~g~s~~--------~~~~  245 (390)
T PRK03545        199 ------------------------PLLFRRPALVSLYLLTVVVVTAHFTAYSYIEP-FVQQVAGLSEN--------FATL  245 (390)
T ss_pred             ------------------------HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCcc--------HHHH
Confidence                                    00000011111 11111111222222211111 11100111111        1233


Q ss_pred             cchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCc
Q 011513          271 YAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAIS  350 (484)
Q Consensus       271 ~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  350 (484)
                      +.....+..++..++.+++    .+|       . ..+++.++..+.++++.......                      
T Consensus       246 ~~~~~~~~~~~g~~~~g~l----~dr-------~-~~~~~~~~~~~~~~~~~~l~~~~----------------------  291 (390)
T PRK03545        246 LLLLFGGAGIIGSVLFSRL----GNR-------H-PSGFLLIAIALLLVCLLLLLPAA----------------------  291 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHH----hhc-------c-chhHHHHHHHHHHHHHHHHHHHh----------------------
Confidence            3444444555555554443    122       1 12345566665555554432211                      


Q ss_pred             cchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCcCc
Q 011513          351 SLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDL  430 (484)
Q Consensus       351 ~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~l  430 (484)
                       .+.++++...++.|++.....+...+.+.+.+| +.++.++|+++....+|..+|+.+++.+.+..             
T Consensus       292 -~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~-------------  356 (390)
T PRK03545        292 -NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHL-------------  356 (390)
T ss_pred             -chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------
Confidence             234455566788899998888888888888877 47899999999889999999999998876432             


Q ss_pred             cCchhHHHHHHHHHHHHHHHHHHHHhhh
Q 011513          431 NKGRLDYFYYLVAALGLLNFGFFLLCAK  458 (484)
Q Consensus       431 n~~~~~~~f~~la~l~~~~~i~~~~~~~  458 (484)
                      |   +...|+..+++.++++++++...|
T Consensus       357 g---~~~~~~~~~~~~~~~~~~~~~~~~  381 (390)
T PRK03545        357 G---LSSIGYVGAALALAALVWSILIFR  381 (390)
T ss_pred             C---hhHHHHHHHHHHHHHHHHHHHHcc
Confidence            1   345677777777777777665543

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.38  E-value=9.9e-11  Score=120.52  Aligned_cols=85  Identities=16%  Similarity=0.258  Sum_probs=71.6

Q ss_pred             hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhh
Q 011513           33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP  112 (484)
Q Consensus        33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~  112 (484)
                      +...+.+++.+.+++.|...|...+++.|.+++++      +.+++++++.+.++|.++++.+++.+.+..+|++.|.+.
T Consensus       102 ~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  175 (406)
T PRK11551        102 DFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL------RGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVG  175 (406)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHH
Confidence            46678889999999999999999999999997532      467899999999999999999998888889999999988


Q ss_pred             hHHHHHHHHHH
Q 011513          113 AFMMFLSCAMF  123 (484)
Q Consensus       113 ~~~~~l~~i~~  123 (484)
                      ++..++..++.
T Consensus       176 ~~~~~~~~~~~  186 (406)
T PRK11551        176 GVGPLLLVPLL  186 (406)
T ss_pred             HHHHHHHHHHH
Confidence            77666555443

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.36  E-value=1.3e-10  Score=117.66  Aligned_cols=86  Identities=12%  Similarity=0.179  Sum_probs=74.2

Q ss_pred             hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhh
Q 011513           33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP  112 (484)
Q Consensus        33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~  112 (484)
                      +...+++++.+.++|.|...|...+++.|.+++++      |.+++++...+.++|.++++.+++++.++.+|++.|.+.
T Consensus        81 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~  154 (399)
T TIGR00893        81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIE  154 (399)
T ss_pred             CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHH
Confidence            56788999999999999999999999999998531      467899999999999999999999988889999999988


Q ss_pred             hHHHHHHHHHHH
Q 011513          113 AFMMFLSCAMFF  124 (484)
Q Consensus       113 ~~~~~l~~i~~l  124 (484)
                      ++..++..+..+
T Consensus       155 ~~~~~~~~~~~~  166 (399)
T TIGR00893       155 GVLGIIWGVLWL  166 (399)
T ss_pred             HHHHHHHHHHhh
Confidence            877766665543

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.36  E-value=7.6e-11  Score=121.19  Aligned_cols=293  Identities=11%  Similarity=0.049  Sum_probs=167.1

Q ss_pred             hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhh
Q 011513           33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP  112 (484)
Q Consensus        33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~  112 (484)
                      +.+.+++++.+.+++.+ +.|...+.+.|++++++      +.++.++...+.++|.++++.+++++.+..+|++.|.+.
T Consensus       106 ~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~  178 (408)
T PRK09874        106 NIWQFLILRALLGLLGG-FVPNANALIATQVPRNK------SGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFIT  178 (408)
T ss_pred             hHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence            46678888888998865 45777888888887531      356788888999999999999999998889999999998


Q ss_pred             hHHHHHHHHHHHhccceeeecCCCCCchhhHHHHHHHHHHhccccCCCCCccccccCCCccccCCCCCCCCccccccccc
Q 011513          113 AFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAA  192 (484)
Q Consensus       113 ~~~~~l~~i~~l~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~  192 (484)
                      ++..++..+..+...+.-.  ++.+++...       ..++                                 ..   .
T Consensus       179 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-------~~~~---------------------------------~~---~  213 (408)
T PRK09874        179 ASVLFLCFLVTLFCIRENF--QPVSKKEML-------HMRE---------------------------------VV---T  213 (408)
T ss_pred             HHHHHHHHHHHHHHhccCc--ccccchhhh-------HHHH---------------------------------HH---H
Confidence            8877766654433221100  010000000       0000                                 00   0


Q ss_pred             ccCCccccccCCCCCCCcccCcchhHHHHHHhHhhHHHHHHHHHHHHHHhchhhHHHHHHHhcCCCCCCccccccccccc
Q 011513          193 IMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYA  272 (484)
Q Consensus       193 i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~~~~~~~~g~~g~~i~~~~~~  272 (484)
                                      .        .++.+..   +.++.....+........+.+.....+......  ....-.+.+.
T Consensus       214 ----------------~--------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~  264 (408)
T PRK09874        214 ----------------S--------LKNPKLV---LSLFVTTLIIQVATGSIAPILTLYVRELAGNVS--NIAFISGMIA  264 (408)
T ss_pred             ----------------h--------CcCCchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--HHHHHHHHHH
Confidence                            0        0000111   111111122222222222212111111111100  0000012233


Q ss_pred             hhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccc
Q 011513          273 IFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSL  352 (484)
Q Consensus       273 ~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  352 (484)
                      .+..+..++..|+.+++    .+|+       ...+-+.+++++.+++++.....                        .
T Consensus       265 ~~~~l~~~~~~~~~g~l----~dr~-------g~~~~~~~~~~~~~~~~~~~~~~------------------------~  309 (408)
T PRK09874        265 SVPGVAALLSAPRLGKL----GDRI-------GPEKILITALIFSVLLLIPMSFV------------------------Q  309 (408)
T ss_pred             HHHHHHHHHHHHHHHHH----Hhcc-------ccchhHHHHHHHHHHHHHHHHHh------------------------c
Confidence            34444455555555553    2332       22233445555555555443322                        1


Q ss_pred             hHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCcCccC
Q 011513          353 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNK  432 (484)
Q Consensus       353 s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~ln~  432 (484)
                      +.+++....++.|+++....|...+.+.+.+|++.+|..+|++.....+|..+|+.+++.+.+..      +        
T Consensus       310 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~------g--------  375 (408)
T PRK09874        310 TPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANY------G--------  375 (408)
T ss_pred             cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhc------c--------
Confidence            23344455678899999999999999999999999999999999999999999999998875422      1        


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhh
Q 011513          433 GRLDYFYYLVAALGLLNFGFFLLCA  457 (484)
Q Consensus       433 ~~~~~~f~~la~l~~~~~i~~~~~~  457 (484)
                        +...|.+.+++.+++.+...+..
T Consensus       376 --~~~~f~~~~~~~l~~~~~~~~~~  398 (408)
T PRK09874        376 --FRAVFLVTAGVVLFNAVYSWNSL  398 (408)
T ss_pred             --hhHHHHHHHHHHHHHHHHHHHHH
Confidence              34567777777777766555443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.34  E-value=2.3e-10  Score=117.20  Aligned_cols=282  Identities=12%  Similarity=0.007  Sum_probs=169.7

Q ss_pred             hhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchh
Q 011513           32 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGI  111 (484)
Q Consensus        32 ~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i  111 (484)
                      .+.+.+++++.+.+.+.+...|...++..+. ++    +   +...++......++|.+++|.+++++.+++||+..|.+
T Consensus        92 ~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~-~~----~---~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~  163 (382)
T TIGR00902        92 HNAWLLFIAIGLFALFFSAGMPIGDALANTW-QK----Q---FGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAI  163 (382)
T ss_pred             hhHHHHHHHHHHHHHHHccchhHHHHHHHHH-HH----H---cCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHH
Confidence            3567788888888999988889888886543 21    1   24578889999999999999999999999999999987


Q ss_pred             hhHHHHHHHHHHHhccceeeecCCCCCchhhHHHHHHHHHHhccccCCCCCccccccCCCccccCCCCCCCCcccccccc
Q 011513          112 PAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKA  191 (484)
Q Consensus       112 ~~~~~~l~~i~~l~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  191 (484)
                      .++..++..+.+. ..+.   .+|+++..                    +.+             .    .   ..    
T Consensus       164 ~~~~~~~~~~~~~-~~~~---~~~~~~~~--------------------~~~-------------~----~---~~----  195 (382)
T TIGR00902       164 LTAGLAFMLIGFL-IKPT---IPPKDAIP--------------------EDE-------------S----Q---GD----  195 (382)
T ss_pred             HHHHHHHHHHHHH-cCCC---CCCCcccc--------------------ccc-------------c----c---cc----
Confidence            6654333322222 1110   01110000                    000             0    0   00    


Q ss_pred             cccCCccccccCCCCCCCcccCcchhHHHHHHhHhhHHHHHHHHHHHHHHhchhhHHHHHHHhcCCCCCCcccccccccc
Q 011513          192 AIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASY  271 (484)
Q Consensus       192 ~i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~~~~~~~~g~~g~~i~~~~~  271 (484)
                                      ..+     .+.-..|++   ..+.+...+++..+.+..+.....-.  |....    +.-.+.+
T Consensus       196 ----------------~~~-----~~~l~~~~~---~~~l~~~~l~~~~~~~~~~~~~~~l~--~~g~s----~~~~g~l  245 (382)
T TIGR00902       196 ----------------SAF-----IALLKNPMN---LRFLAAVCLIQGAHAAYYGFSAIYWQ--AAGIS----ASATGLL  245 (382)
T ss_pred             ----------------hhH-----HHHHcChHH---HHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCC----HhHHHHH
Confidence                            000     000001222   22223333344444444442221111  11111    0112344


Q ss_pred             chhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCcc
Q 011513          272 AIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISS  351 (484)
Q Consensus       272 ~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  351 (484)
                      ..+..+..++..++.+++    .+|       .++.+-+.+|.++.++.++..++.+                       
T Consensus       246 ~~~~~~~~i~~~~~~~~l----~~r-------~g~~~~l~~~~~~~~~~~~~~~~~~-----------------------  291 (382)
T TIGR00902       246 WGIGVLAEIIIFAFSNKL----FQN-------CSARDLLLISAIACVGRWAIIGAIE-----------------------  291 (382)
T ss_pred             HHHHHHHHHHHHHHhHHH----Hhh-------CCHHHHHHHHHHHHHHHHHHHHhHh-----------------------
Confidence            455555555555554443    333       4455557788888888887765542                       


Q ss_pred             chHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHH-HHHHHHHHHHHHHhHhhcccccCCCCCCCCCcCc
Q 011513          352 LSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAF-VGFAISNYLNGFLISMVHRFTKGASTGDWLPEDL  430 (484)
Q Consensus       352 ~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~-l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~l  430 (484)
                       +.++++..-++.+++..+..+....++.+. |++.++.++|+++ +..++|..+++.+++.+.+..             
T Consensus       292 -~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~-------------  356 (382)
T TIGR00902       292 -AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTL-------------  356 (382)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------------
Confidence             344555556999999999999999999998 9999999999986 567899999999999886432             


Q ss_pred             cCchhHHHHHHHHHHHHHHHHH
Q 011513          431 NKGRLDYFYYLVAALGLLNFGF  452 (484)
Q Consensus       431 n~~~~~~~f~~la~l~~~~~i~  452 (484)
                      +    ...|+..++++++++++
T Consensus       357 g----~~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       357 G----AGTFVFMAIIAAAAFFL  374 (382)
T ss_pred             c----HHHHHHHHHHHHHHHHH
Confidence            1    24577777777765443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.34  E-value=2.2e-10  Score=121.38  Aligned_cols=267  Identities=13%  Similarity=0.051  Sum_probs=166.1

Q ss_pred             hhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchh
Q 011513           32 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGI  111 (484)
Q Consensus        32 ~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i  111 (484)
                      .+.+.+++..++++++.+...|..++++.+..++++      +.++.++.....|+.-++||.++|.+....|-.+.|++
T Consensus       101 ~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~i  174 (524)
T PF05977_consen  101 LSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLI  174 (524)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence            456788888999999999999999999999998643      56788899999999999999999998887898999999


Q ss_pred             hhHHHHHHHHHHHhccceeeecCCCCCchhhHHHHHHHHHHhccccCCCCCccccccCCCccccCCCCCCCCcccccccc
Q 011513          112 PAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKA  191 (484)
Q Consensus       112 ~~~~~~l~~i~~l~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  191 (484)
                      .++..+++...++..++..   +++..+-.+..+-++...|                                  +    
T Consensus       175 nalsfl~~i~~l~~~~~~~---~~~~~~~e~~~~~l~~G~r----------------------------------y----  213 (524)
T PF05977_consen  175 NALSFLISILALLRWKPPP---PPSSLPRERFFSALREGLR----------------------------------Y----  213 (524)
T ss_pred             HHHHHHHHHHHHHHccccc---cccccchhhhhhhHHHHHH----------------------------------H----
Confidence            9998888766554333221   1111111111110000000                                  0    


Q ss_pred             cccCCccccccCCCCCCCcccCcchhHHHHHHhHhhHHHHHHHHHHHHHHhchhhHHHHHH-HhcCCCCCCccccccccc
Q 011513          192 AIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQA-LQSDRRVGNTHFKIPAAS  270 (484)
Q Consensus       192 ~i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~-~~~~~~~g~~g~~i~~~~  270 (484)
                                                +...+.+...+.   ...++.....-....+.... +.++.  +    ..-.+.
T Consensus       214 --------------------------v~~~~~l~~~l~---~~~~~~l~~~a~~aLlPl~a~~~l~~--~----a~~yGl  258 (524)
T PF05977_consen  214 --------------------------VRSSPPLRSVLL---RSFLFNLFASAVWALLPLFARDVLGG--G----ASGYGL  258 (524)
T ss_pred             --------------------------HhcchHHHHHHH---HHHHHHHhhhHHHHhhhHHHHHHhCC--c----HHHHHH
Confidence                                      000111111111   11111111111111111112 22221  1    011244


Q ss_pred             cchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCc
Q 011513          271 YAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAIS  350 (484)
Q Consensus       271 ~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  350 (484)
                      +.+.-++..++..-+..+     +++   +   .+..+-+..+.++.+++++.+++.                       
T Consensus       259 l~a~~gvGai~Gal~~~~-----l~~---~---~~~~~lv~~~~~~~a~~~~~lal~-----------------------  304 (524)
T PF05977_consen  259 LLAAFGVGAILGALLLPR-----LRR---R---LSSRRLVLLASLLFALALLLLALS-----------------------  304 (524)
T ss_pred             HHHHHHHHHHHHHHHHHH-----hhc---c---cCcchhhHHHHHHHHHHHHHHhcc-----------------------
Confidence            444445555555443333     333   1   333344566777777776666553                       


Q ss_pred             cchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513          351 SLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR  415 (484)
Q Consensus       351 ~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~  415 (484)
                       .+.|..++..++.|.+...........+.+.+|+++||+.++++......+..+|..+.+.+.+
T Consensus       305 -~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~  368 (524)
T PF05977_consen  305 -PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLAD  368 (524)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             2344556677889999999999999999999999999999999998888888888888888764

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.33  E-value=1.1e-10  Score=117.57  Aligned_cols=269  Identities=9%  Similarity=0.041  Sum_probs=161.7

Q ss_pred             hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhh
Q 011513           33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP  112 (484)
Q Consensus        33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~  112 (484)
                      +.+.+++++.+.+++.+...|...+++.|.+++++      +.++++++..+.++|.++++.+++++.+..||++.|.+.
T Consensus        91 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~  164 (365)
T TIGR00900        91 NIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVD  164 (365)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            56788999999999999999999999999998531      467999999999999999999999998889999999988


Q ss_pred             hHHHHHHHHHHHhccceeeecCC-CCCchhhHHHHHHHHHHhccccCCCCCccccccCCCccccCCCCCCCCcccccccc
Q 011513          113 AFMMFLSCAMFFLGSRLYAKVKP-EGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKA  191 (484)
Q Consensus       113 ~~~~~l~~i~~l~~~~~~~~~~p-~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  191 (484)
                      ++..+++.+..+..+..  ++++ +..+...  +                                         .....
T Consensus       165 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~-----------------------------------------~~~~~  199 (365)
T TIGR00900       165 AVGFAISALLIVSVRIP--ELAASEIQALSN--A-----------------------------------------VLRDT  199 (365)
T ss_pred             HHHHHHHHHHHHhcccc--cCCCccccccch--h-----------------------------------------HHHHH
Confidence            77766665543322111  0000 0000000  0                                         00000


Q ss_pred             cccCCccccccCCCCCCCcccCcchhHHHHHHhHhhHHHHHHHHHHHHHHhchh-hHHHHHH-HhcCCCCCCcccccccc
Q 011513          192 AIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQ-TYVVFQA-LQSDRRVGNTHFKIPAA  269 (484)
Q Consensus       192 ~i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~-t~~~~q~-~~~~~~~g~~g~~i~~~  269 (484)
                                             .+..++.++-..+..+.+....+...+.... +...... +..+.+      ....+
T Consensus       200 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~  250 (365)
T TIGR00900       200 -----------------------REGIKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRG------STHYG  250 (365)
T ss_pred             -----------------------HhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCc------hHHHH
Confidence                                   0000000000011122222222222222111 1111111 111111      01123


Q ss_pred             ccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCC
Q 011513          270 SYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAI  349 (484)
Q Consensus       270 ~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  349 (484)
                      .+.....+..++..++..++    .+|.       ...+-+.+++++.++++....+..                     
T Consensus       251 ~~~~~~~~~~~~~~~~~~~l----~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~---------------------  298 (365)
T TIGR00900       251 WVLAAFGLGALLGALLLGLL----GRYF-------KRMALMTGAIFVIGLAILVVGLTP---------------------  298 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHh-------chhHHHHHHHHHHHHHHHHHHhhc---------------------
Confidence            44455555555555555543    2221       122234455555666555544321                     


Q ss_pred             ccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513          350 SSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR  415 (484)
Q Consensus       350 ~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~  415 (484)
                       + +.+++....++.+++.....+...+++.+..|++.||..+|+++....+|..+++.+++.+.+
T Consensus       299 -~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~  362 (365)
T TIGR00900       299 -P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD  362 (365)
T ss_pred             -h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             1 244556677899999999999999999999999999999999999999999999999887653

>PRK10054 putative transporter; Provisional

Probab=99.33  E-value=6.5e-11  Score=121.85  Aligned_cols=261  Identities=11%  Similarity=-0.005  Sum_probs=151.2

Q ss_pred             HHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhhh
Q 011513           34 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPA  113 (484)
Q Consensus        34 ~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~~  113 (484)
                      ...+++++.+.+.+.+.+.|...+...|.+++++      +.+++++.|...|+|.+++|.+++++.+ +||+..|.+.+
T Consensus        96 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~  168 (395)
T PRK10054         96 VTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS------KTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAA  168 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHH
Confidence            4455666667777778888889999999987531      4679999999999999999999999875 79999999888


Q ss_pred             HHHHHHHHHHHhccceeeecCCCCCchhhHHHHHHHHHHhccccCCCCCccccccCCCccccCCCCCCCCcccccccccc
Q 011513          114 FMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAI  193 (484)
Q Consensus       114 ~~~~l~~i~~l~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~i  193 (484)
                      +..+++.+...+..++.  +++++++...          .                                 + +... 
T Consensus       169 ~~~~i~~i~~~~~~~~~--~~~~~~~~~~----------~---------------------------------~-~~~~-  201 (395)
T PRK10054        169 ICSAFPLVFIQIWVQRS--EKAIATETGS----------V---------------------------------W-SPSV-  201 (395)
T ss_pred             HHHHHHHHHHHHHHhcc--ccccccchhh----------h---------------------------------h-hhhh-
Confidence            87777655433222111  1111000000          0                                 0 0000 


Q ss_pred             cCCccccccCCCCCCCcccCcchhHHHHHHhHhhHHHHHHHHHHHHHHhchh---hHHHHHHHhcCCCCCCccccccccc
Q 011513          194 MTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQ---TYVVFQALQSDRRVGNTHFKIPAAS  270 (484)
Q Consensus       194 ~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~---t~~~~q~~~~~~~~g~~g~~i~~~~  270 (484)
                                              .-..|++   ..+.+...+....+....   ..+.. . ..+....    +-..+.
T Consensus       202 ------------------------~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~-~-~~~~~~~----~~~~g~  248 (395)
T PRK10054        202 ------------------------LLQDKAL---LWFTCSGFLASFVSGAFASCISQYVM-V-VADSDFA----EKVVAV  248 (395)
T ss_pred             ------------------------hccCcee---hHHHHHHHHHHHHHHHhhhhHHHHHH-H-hcccchH----HHHHHH
Confidence                                    0000111   111111121111111111   11211 1 1111110    011234


Q ss_pred             cchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCc
Q 011513          271 YAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAIS  350 (484)
Q Consensus       271 ~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  350 (484)
                      +...+.+..+.+.+..+++    .+|       .++.+.+.+|+++.++++....+..                      
T Consensus       249 ~~~~~~~~~~~~~~~~g~~----~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~----------------------  295 (395)
T PRK10054        249 VLPVNAAMVVSLQYSVGRR----LNA-------ANIRPLMTAGTLCFVIGLVGFIFSG----------------------  295 (395)
T ss_pred             HHHhhhhheeeehhHHHHH----Hcc-------CCchhHHHHHHHHHHHHHHHHHHcc----------------------
Confidence            4555555555555544442    222       2233456677777777766554321                      


Q ss_pred             cchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhccc
Q 011513          351 SLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRF  416 (484)
Q Consensus       351 ~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~  416 (484)
                       .+.+.+....++.++||....|...+.+.+.+|++++|.+.|... ...+|..+|+.+++.+.+.
T Consensus       296 -~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~  359 (395)
T PRK10054        296 -NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTT  359 (395)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHH
Confidence             122223345689999999999999999999999999999998755 4558889999998887653

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.33  E-value=3.1e-10  Score=116.16  Aligned_cols=262  Identities=11%  Similarity=0.025  Sum_probs=153.2

Q ss_pred             hhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchh
Q 011513           32 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGI  111 (484)
Q Consensus        32 ~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i  111 (484)
                      .+.+.+++.+.+.+++.+...|...++..|..++        +.+.+++.....++|.++||.+++++.+++||+..|++
T Consensus        92 ~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~~~--------~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~  163 (382)
T PRK11128         92 HSFWLLFVAIGLFNLFFSPLVPLTDALANTWQKQ--------IGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWI  163 (382)
T ss_pred             ccHHHHHHHHHHHHHHHcccccHHHHHHHHHHhh--------ccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHH
Confidence            3466777888889999999999888888876221        13466677788899999999999999998999999988


Q ss_pred             hhHHHHHHHHHHHhccceeeecCCCCCchhhHHHHHHHHHHhccccCCCCCccccccCCCccccCCCCCCCCcccccccc
Q 011513          112 PAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKA  191 (484)
Q Consensus       112 ~~~~~~l~~i~~l~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  191 (484)
                      .++..++..+... ..+   +.+|++++.             +.   .  +              +     .   .    
T Consensus       164 ~~~~~~~~~~~~~-~~~---~~~~~~~~~-------------~~---~--~--------------~-----~---~----  195 (382)
T PRK11128        164 LTAGVASMLLGQL-LRP---TIMPQGESR-------------QQ---E--S--------------A-----G---W----  195 (382)
T ss_pred             HHHHHHHHHHHHH-ccC---CCCCccccc-------------cc---c--c--------------c-----c---c----
Confidence            7765554443222 111   111111000             00   0  0              0     0   0    


Q ss_pred             cccCCccccccCCCCCCCcccCcchhHHHHHHhHhhHHHHHHHHHHHHHHhchhhHHHHHHHhcCCCCCCcccccccccc
Q 011513          192 AIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASY  271 (484)
Q Consensus       192 ~i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~~~~~~~~g~~g~~i~~~~~  271 (484)
                                      ..+     .+.-..|++   +.+.+...+....+.+..+.......+.  ...    +-..+.+
T Consensus       196 ----------------~~~-----~~i~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~--g~s----~~~~g~~  245 (382)
T PRK11128        196 ----------------PAW-----KALLKEPTV---WRFLLCVSLLQGSHAAYYGFSAIYWQAA--GYS----ASTIGYL  245 (382)
T ss_pred             ----------------chH-----HHHHcChhH---HHHHHHHHHHHHHhHhHHHHHHHHHHHC--CCC----HhHHHHH
Confidence                            000     001111222   2222222222233322222221111211  111    0113445


Q ss_pred             chhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCcc
Q 011513          272 AIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISS  351 (484)
Q Consensus       272 ~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  351 (484)
                      ..++.+..++...+.+++    .+|       .+..+.+.+++++.+++++..+..                        
T Consensus       246 ~~~~~~~~~~~~~~~g~l----~~r-------~~~~~~l~~~~~~~~~~~~~~~~~------------------------  290 (382)
T PRK11128        246 WSLGVVAEVLIFAFSNRL----FRR-------WSARDLLLLSAICGVVRWGLMGST------------------------  290 (382)
T ss_pred             HHHHHHHHHHHHHHHHHH----HHH-------CCHHHHHHHHHHHHHHHHHHHHhh------------------------
Confidence            556666666666655553    333       334445677777777776655443                        


Q ss_pred             chHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHH-HHHHHHHHHHHHHhHhhcc
Q 011513          352 LSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAF-VGFAISNYLNGFLISMVHR  415 (484)
Q Consensus       352 ~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~-l~~~iG~~lg~~l~~~~~~  415 (484)
                      .+.++++...++.++++.+..+....++.++. ++.++.++++.+ +..++|..+|+.+++.+.+
T Consensus       291 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~  354 (382)
T PRK11128        291 TALPWLIVIQILHCGTFTVCHLAAMRYIAARP-GSEVIRLQALYSALAMGGSIAIMTVLSGFLYQ  354 (382)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            23455666778899999999999999988874 555688999886 5667888899999888764

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.32  E-value=5.1e-10  Score=117.61  Aligned_cols=84  Identities=10%  Similarity=0.130  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeec-ccccccchhh
Q 011513           34 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSD-VSWAWGLGIP  112 (484)
Q Consensus        34 ~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~-~g~~~~F~i~  112 (484)
                      ...+++.+++.+++.|...|...+.+.+++++++      +.++.++++.+.++|.++++.+++++.+. .||++.|.+.
T Consensus       131 ~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~  204 (465)
T TIGR00894       131 IALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVF  204 (465)
T ss_pred             chHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhh
Confidence            4568889999999999999999999999998532      46789999999999999999999999887 4999999998


Q ss_pred             hHHHHHHHHHH
Q 011513          113 AFMMFLSCAMF  123 (484)
Q Consensus       113 ~~~~~l~~i~~  123 (484)
                      ++..++..+++
T Consensus       205 ~~~~~~~~~~~  215 (465)
T TIGR00894       205 GIVGCAWSLLW  215 (465)
T ss_pred             hHHHHHHHHHH
Confidence            88766655443

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.29  E-value=9.6e-11  Score=117.37  Aligned_cols=266  Identities=18%  Similarity=0.197  Sum_probs=159.8

Q ss_pred             hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhh
Q 011513           33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP  112 (484)
Q Consensus        33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~  112 (484)
                      +.+.+++++++.++|.+...|...+++.|.+++++      +.+.+++.+.+.++|.++++.+++++.+++||++.|++.
T Consensus        84 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~  157 (352)
T PF07690_consen   84 NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLIS  157 (352)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHH
T ss_pred             hHHHHhhhccccccccccccccccccccccchhhh------hhhccccccchhhhhhhcccchhhhhhhccccccccccc
Confidence            34479999999999999999999999999999732      467999999999999999999999999889999999999


Q ss_pred             hHHHHHHHHHHHhccceeeecCCCCCchhhHHHHHHHHHHhccccCCCCCccccccCCCccccCCCCCCCCccccccccc
Q 011513          113 AFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAA  192 (484)
Q Consensus       113 ~~~~~l~~i~~l~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~  192 (484)
                      ++..++..++.....+.   ++++....             +    +.+.+     .            .....+.+   
T Consensus       158 ~~~~~~~~il~~~~~~~---~~~~~~~~-------------~----~~~~~-----~------------~~~~~~~~---  197 (352)
T PF07690_consen  158 AILSLIAAILFILFLPE---PPPPRERE-------------S----PKESE-----S------------KKPKPLKP---  197 (352)
T ss_dssp             HHHHHHHHHHHHCCC------STTTT---------------S----STTTT-------------------HHHCCCH---
T ss_pred             cchhhhhhhhHhhhhhh---cccccccc-------------c----ccccc-----c------------cccccccc---
Confidence            99988887653332211   11111000             0    00000     0            00000000   


Q ss_pred             ccCCccccccCCCCCCCcccCcchhHHHHHHhHhhHHHHHHHHHHHHHHhchhhHHH---HHHHhcCCCCCCcccccccc
Q 011513          193 IMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVV---FQALQSDRRVGNTHFKIPAA  269 (484)
Q Consensus       193 i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~---~q~~~~~~~~g~~g~~i~~~  269 (484)
                                      .+     ....+.+.+   ..++.........+....+...   .+..+.+   +    ....+
T Consensus       198 ----------------~~-----~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~----~~~~~  246 (352)
T PF07690_consen  198 ----------------GF-----KSLFKNPVL---WILLIAFFLFFFVFSGFSFFLPLYLQEVLGFS---G----PSQAG  246 (352)
T ss_dssp             -----------------C-----THHHHHHCC---HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCC---T----HHHHH
T ss_pred             ----------------cc-----ccccccchh---hhhhhhhhHHHHHHHHhhcccchhhhhccCCC---H----HHHHH
Confidence                            01     001111111   1122222222222222222111   1122222   0    01123


Q ss_pred             ccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCC
Q 011513          270 SYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAI  349 (484)
Q Consensus       270 ~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  349 (484)
                      .+..+..+..++..++.+++    .+|.       +..++..+......++.+...+...                    
T Consensus       247 ~~~~~~~~~~~~~~~~~~~l----~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~--------------------  295 (352)
T PF07690_consen  247 LLFSIFGIVGIIGSLLAGRL----SDRF-------GRRRRLLIAILLLILGALGLLLLPF--------------------  295 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH----HHHT-------TCHHHHHHHHHHHHHHHHHHCCSHH--------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHc-------CcHHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence            34455555555556666664    3342       2233444444444444444433221                    


Q ss_pred             ccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHH
Q 011513          350 SSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNG  407 (484)
Q Consensus       350 ~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~  407 (484)
                       ..+..|.....++.|++..+..+...+++.+.+|++.+|.++|+.+...++|..+||
T Consensus       296 -~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  296 -SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             -HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence             124556666778899999999999999999999999999999999999999999886

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.28  E-value=2.5e-10  Score=133.08  Aligned_cols=288  Identities=10%  Similarity=0.007  Sum_probs=161.7

Q ss_pred             hhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchh
Q 011513           32 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGI  111 (484)
Q Consensus        32 ~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i  111 (484)
                      .+.+.+++++++.+++.+++.|...+++.|.+++++      +..+.+++.++.++|.++||++++++....||++.|.+
T Consensus       106 ~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~  179 (1140)
T PRK06814        106 NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLATISGNFVILVAL  179 (1140)
T ss_pred             hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence            357789999999999999999999999999998642      35699999999999999999999999888999988844


Q ss_pred             hhHHHHHHHHHHHhccceeeecCCCCCchhhHHHHHHHHHHhccccCCCCCccccccCCCccccCCCCCCCCcccccccc
Q 011513          112 PAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKA  191 (484)
Q Consensus       112 ~~~~~~l~~i~~l~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  191 (484)
                      .++..++++++.+. .+.   .+++....+.                .  .                       ......
T Consensus       180 ~~~~~~~~~~~~~~-~~~---~~~~~~~~~~----------------~--~-----------------------~~~~~~  214 (1140)
T PRK06814        180 LMGIAVLGWLASLF-IPK---TGNAAPDLKI----------------D--R-----------------------NIIRST  214 (1140)
T ss_pred             HHHHHHHHHHHHhh-CCC---CCCCCCCCee----------------c--c-----------------------chHHHH
Confidence            44433333332221 111   1111000000                0  0                       000000


Q ss_pred             cccCCccccccCCCCCCCcccCcchhHHHHHHhHhhHHHHHHHHHHHHHHhchhhHHHHHH-HhcCCCCCCccccccccc
Q 011513          192 AIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQA-LQSDRRVGNTHFKIPAAS  270 (484)
Q Consensus       192 ~i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~-~~~~~~~g~~g~~i~~~~  270 (484)
                      .               ..++     .+...+.+   ..+.+....++.++....+.+.... ......      ..-.++
T Consensus       215 ~---------------~~~~-----~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~------~~~~g~  265 (1140)
T PRK06814        215 I---------------TLLK-----YAKADKRI---WLAILGISWFWLVGAVVLSQLPLLAKETLGGD------ENVATL  265 (1140)
T ss_pred             H---------------HHHH-----HHhcCchH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCc------hHHHHH
Confidence            0               0000     00000111   1111222222222222222111111 111111      011356


Q ss_pred             cchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCc
Q 011513          271 YAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAIS  350 (484)
Q Consensus       271 ~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  350 (484)
                      +.+...+..++...+.+++    .++.       ...+.+.+|.++.+++.+.+.+....   ....... ...-..-..
T Consensus       266 ~~~~~~~g~~ig~~~~g~l----~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~-~~~~~~~~~  330 (1140)
T PRK06814        266 FLAVFSVGVAVGSFLASKL----SEGR-------ITLLYVPIGALLMGLFGLDLAFASSS---VPAEPAQ-LKSILVFLS  330 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHH----hCCc-------eeeeeehHHHHHHHHHHHHHHhcccc---ccccccc-ccchhhhhc
Confidence            6677777777777776664    2221       11223444555444444433321000   0000000 000000000


Q ss_pred             cchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513          351 SLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH  414 (484)
Q Consensus       351 ~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~  414 (484)
                      ..+.|++++.+++.|++..+..+...+++.+.+|++++|.++|++++...+|..+++.+++.+.
T Consensus       331 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~  394 (1140)
T PRK06814        331 KRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQ  394 (1140)
T ss_pred             ccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence            1345566778889999999999999999999999999999999999999999999999888775

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.28  E-value=4.5e-10  Score=112.02  Aligned_cols=263  Identities=18%  Similarity=0.231  Sum_probs=179.6

Q ss_pred             hhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchh
Q 011513           32 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGI  111 (484)
Q Consensus        32 ~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i  111 (484)
                      .+...+++++.+.+++.+...|...++..|.+++++      |...+++.+.+.++|..+++.+++++.++.+|++.|.+
T Consensus        85 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  158 (352)
T cd06174          85 SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLI  158 (352)
T ss_pred             ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            356788899999999999999999999999998632      35789999999999999999999999998899999999


Q ss_pred             hhHHHHHHHHHHHhccceeeecCCCCCchhhHHHHHHHHHHhccccCCCCCccccccCCCccccCCCCCCCCcccccccc
Q 011513          112 PAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKA  191 (484)
Q Consensus       112 ~~~~~~l~~i~~l~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  191 (484)
                      .++..++..+......             +.                                                 
T Consensus       159 ~~~~~~~~~~~~~~~~-------------~~-------------------------------------------------  176 (352)
T cd06174         159 LAILGLLLALLLLFLL-------------RL-------------------------------------------------  176 (352)
T ss_pred             HHHHHHHHHHHHHHHH-------------HH-------------------------------------------------
Confidence            8888777766543211             00                                                 


Q ss_pred             cccCCccccccCCCCCCCcccCcchhHHHHHHhHhhHHHHHHHHHHHHHHhchhhHHHH-HHHhcCCCCCCccccccccc
Q 011513          192 AIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVF-QALQSDRRVGNTHFKIPAAS  270 (484)
Q Consensus       192 ~i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~~-q~~~~~~~~g~~g~~i~~~~  270 (484)
                                                      +   ..+.+....+...+......... ..+..+  ..    ....++
T Consensus       177 --------------------------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~  215 (352)
T cd06174         177 --------------------------------L---LLLALAFFLLSFGYYGLLTYLPLYLQEVLG--LS----AAEAGL  215 (352)
T ss_pred             --------------------------------H---HHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CC----HHHHHH
Confidence                                            0   00001111111111111111110 011111  11    112345


Q ss_pred             cchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchH-HHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCC
Q 011513          271 YAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQ-RMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAI  349 (484)
Q Consensus       271 ~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~-ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  349 (484)
                      +.....+..++..++..++    .+|.++|       + .+.++.++.+++++.....+                     
T Consensus       216 ~~~~~~~~~~i~~~~~~~~----~~~~~~~-------~~~~~~~~~~~~i~~~~~~~~~---------------------  263 (352)
T cd06174         216 LLSLFGLGGILGALLGGLL----SDRLGRR-------RLLLLIGLLLAALGLLLLALAP---------------------  263 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHH----HHHHHhh-------hHHHHHHHHHHHHHHHHHHHhc---------------------
Confidence            5666677777777776664    3443321       2 46677777777777665531                     


Q ss_pred             ccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCcC
Q 011513          350 SSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPED  429 (484)
Q Consensus       350 ~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~  429 (484)
                         +.+++....++.++++....+...+++.+..|++.|+..+|++.....+|..+++.+.+.+.+..      +     
T Consensus       264 ---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~------~-----  329 (352)
T cd06174         264 ---SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTG------G-----  329 (352)
T ss_pred             ---cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------C-----
Confidence               24566678899999999999999999999999999999999999999999999999998875321      1     


Q ss_pred             ccCchhHHHHHHHHHHHHHHHHHHH
Q 011513          430 LNKGRLDYFYYLVAALGLLNFGFFL  454 (484)
Q Consensus       430 ln~~~~~~~f~~la~l~~~~~i~~~  454 (484)
                           ....|.+.+++.++..+++.
T Consensus       330 -----~~~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         330 -----YGGVFLILAALALLAALLLL  349 (352)
T ss_pred             -----cchHHHHHHHHHHHHHHHhe
Confidence                 23456666777666665543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK12382 putative transporter; Provisional

Probab=99.28  E-value=9.6e-10  Score=112.72  Aligned_cols=277  Identities=12%  Similarity=0.090  Sum_probs=163.7

Q ss_pred             hhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchh
Q 011513           32 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGI  111 (484)
Q Consensus        32 ~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i  111 (484)
                      .+...+++++.+.++|.+...|...+.+.|.+++++      |.++++++..+.++|.+++|.+++++.+.+||++.+.+
T Consensus       110 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~  183 (392)
T PRK12382        110 FKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALT  183 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHH
Confidence            456788999999999999999999899999987532      35688888899999999999999999888899877665


Q ss_pred             hhHHHHHHHHHHHhccceeeecCCCCCchhhHHHHHHHHHHhccccCCCCCccccccCCCccccCCCCCCCCcccccccc
Q 011513          112 PAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKA  191 (484)
Q Consensus       112 ~~~~~~l~~i~~l~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  191 (484)
                      ..+..++..   ++. ++.++.+++++.             +     +                                
T Consensus       184 ~~~~~~~~~---~~~-~~~~~~~~~~~~-------------~-----~--------------------------------  209 (392)
T PRK12382        184 TMVLPLLAW---AFN-GTVRKVPAHAGE-------------R-----P--------------------------------  209 (392)
T ss_pred             HHHHHHHHH---HHH-HhccCCCCCccc-------------C-----c--------------------------------
Confidence            444322222   111 111100000000             0     0                                


Q ss_pred             cccCCccccccCCCCCCCcccCcchhHHHHHHhHh-hHHHHHHHHHHHHHHhchhhHHHHHHHhcCCCCCCccccccccc
Q 011513          192 AIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIR-VIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAAS  270 (484)
Q Consensus       192 ~i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~-~l~l~~~~~~~~~~~~q~~t~~~~q~~~~~~~~g~~g~~i~~~~  270 (484)
                                       ++       .+..|.+.+ .+.+.+....+.......+ .+. +.    ....      ..+.
T Consensus       210 -----------------~~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~-~~----~~~~------~~~~  253 (392)
T PRK12382        210 -----------------SL-------WSVVGLIWKPGLGLALQGVGFAVIGTFVS-LYF-AS----KGWA------MAGF  253 (392)
T ss_pred             -----------------hH-------HHHHHHHHHhHHHHHHHHHHHhHHHHHHH-HHH-Hh----cCCc------hhHH
Confidence                             00       000011000 0111111111222111111 111 11    1111      1122


Q ss_pred             cchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCc
Q 011513          271 YAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAIS  350 (484)
Q Consensus       271 ~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  350 (484)
                      ......+..++..++.+++    .+|..       ..+.+.++..+.+++++.....                       
T Consensus       254 ~~~~~~~~~~~~~~~~g~l----~~r~g-------~~~~~~~~~~~~~~~~~~~~~~-----------------------  299 (392)
T PRK12382        254 TLTAFGGAFVLMRVLFGWM----PDRFG-------GVKVAIVSLLVETVGLLLLWLA-----------------------  299 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHH----HHhcC-------CCeehHHHHHHHHHHHHHHHHc-----------------------
Confidence            2333444455555665554    23322       2233556777777766654432                       


Q ss_pred             cchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCcCc
Q 011513          351 SLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDL  430 (484)
Q Consensus       351 ~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~l  430 (484)
                       .+.++.....++.++++....|.....+.+..|++.||..+|+++....+|+.+++.+.+.+.+..      +      
T Consensus       300 -~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~------g------  366 (392)
T PRK12382        300 -PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSF------G------  366 (392)
T ss_pred             -ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------C------
Confidence             123344556788899998888888888899999999999999999999999999999998876432      1      


Q ss_pred             cCchhHHHHHHHHHHHHHHHHHHHH
Q 011513          431 NKGRLDYFYYLVAALGLLNFGFFLL  455 (484)
Q Consensus       431 n~~~~~~~f~~la~l~~~~~i~~~~  455 (484)
                          +...|.+.+++.++..++...
T Consensus       367 ----~~~~~~~~~~~~~~~~~~~~~  387 (392)
T PRK12382        367 ----YPSVFLAGAISAVLGIIVTIL  387 (392)
T ss_pred             ----chHHHHHHHHHHHHHHHHHHh
Confidence                245667777776666655543

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.27  E-value=7e-10  Score=115.60  Aligned_cols=85  Identities=16%  Similarity=0.227  Sum_probs=70.8

Q ss_pred             hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhh---eeeeecccccccc
Q 011513           33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVI---VYVQSDVSWAWGL  109 (484)
Q Consensus        33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~---~~l~~~~g~~~~F  109 (484)
                      +.+.+++++.+.++|.|...+...++++|.+++++      |..++++++.+.++|.++++.++   +.+.+..+|++.|
T Consensus       126 ~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f  199 (481)
T TIGR00879       126 SVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPL  199 (481)
T ss_pred             chHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHH
Confidence            34678999999999999999999999999998642      35688899999999999999998   7777778999999


Q ss_pred             hhhhHHHHHHHHHH
Q 011513          110 GIPAFMMFLSCAMF  123 (484)
Q Consensus       110 ~i~~~~~~l~~i~~  123 (484)
                      ++.++..++..+..
T Consensus       200 ~~~~~~~~~~~~~~  213 (481)
T TIGR00879       200 GLQLIPAGLLFLGL  213 (481)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99766655554443

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10504 putative transporter; Provisional

Probab=99.27  E-value=9.2e-10  Score=115.78  Aligned_cols=87  Identities=10%  Similarity=0.078  Sum_probs=72.6

Q ss_pred             hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhh
Q 011513           33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP  112 (484)
Q Consensus        33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~  112 (484)
                      +...+++++.+.++|.|...|...+.+.|.+++++      +..++++...+.++|..+||.+++++.++.||++.|.+.
T Consensus        97 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~  170 (471)
T PRK10504         97 TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ------YMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLIN  170 (471)
T ss_pred             CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHH
Confidence            45678889999999999999999999999987421      356888889999999999999999999989999999988


Q ss_pred             hHHHHHHHHHHHh
Q 011513          113 AFMMFLSCAMFFL  125 (484)
Q Consensus       113 ~~~~~l~~i~~l~  125 (484)
                      .....+..+....
T Consensus       171 ~~~~~l~~~~~~~  183 (471)
T PRK10504        171 IPVGIIGAIATLM  183 (471)
T ss_pred             HHHHHHHHHHHHH
Confidence            7766666655443

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.25  E-value=7.3e-10  Score=117.50  Aligned_cols=310  Identities=14%  Similarity=0.089  Sum_probs=165.7

Q ss_pred             hhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchh
Q 011513           32 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGI  111 (484)
Q Consensus        32 ~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i  111 (484)
                      .+...+++++.+.++|.|++.|...+.+.+.+++++     +|.++++++..+.++|..+||.+++++.+++||++.|++
T Consensus        92 ~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~-----~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i  166 (495)
T PRK14995         92 PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEK-----QRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLI  166 (495)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHH
Confidence            357789999999999999999988888888875421     146799999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhccceeeecCCCCCchhhHH------HHHHHHHHhccccCCCCCccccccCCCccccCCCCCCCCcc
Q 011513          112 PAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTV------QVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQF  185 (484)
Q Consensus       112 ~~~~~~l~~i~~l~~~~~~~~~~p~~~pl~~~~------~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (484)
                      .....++.+++.+...+.-.+++.++.......      ..+..+.+..... ......                   ..
T Consensus       167 ~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~-~~~~~~-------------------~~  226 (495)
T PRK14995        167 NVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKG-FLSLWV-------------------TS  226 (495)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhcccc-CCchHH-------------------HH
Confidence            877766665554333222111111111111100      0011111110000 000000                   00


Q ss_pred             ccccccc--ccCCc-cccccCCCCCCCcccCcchhHHHHHHhHhh-HHHHHHHHHHHHHHhchhhHHHHHHHhcCCCCCC
Q 011513          186 RCLDKAA--IMTPE-DQIKSDGSAINPWRLSSMQKVEEVKVLIRV-IPIWASAIVYYVALVQQQTYVVFQALQSDRRVGN  261 (484)
Q Consensus       186 ~~l~~a~--i~~~~-~~~~~~g~~~~~~~~~~~~~v~~~k~~~~~-l~l~~~~~~~~~~~~q~~t~~~~q~~~~~~~~g~  261 (484)
                      ..+-...  ..... .+.. ......++++.+      .+.+... +..+.....+.. +......+.++..+.+.    
T Consensus       227 ~~~~~~~~~l~~f~~~e~~-~~~p~~~~~lf~------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~lq~v~g~s~----  294 (495)
T PRK14995        227 LTLLTGALLLGLFIRTQLA-ASRPMIDMRLFT------HRIILSGVVMAMTAMITLVG-FELLMAQELQFVHGLSP----  294 (495)
T ss_pred             HHHHHHHHHHHHHHHHHhc-CCCCCcCHHHhC------CcccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCCH----
Confidence            0000000  00000 0000 000000111000      0111110 111111111111 10111111111111111    


Q ss_pred             ccccccccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCc
Q 011513          262 THFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVG  341 (484)
Q Consensus       262 ~g~~i~~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~  341 (484)
                          ...+.+.....+...+..|+.+++    .+|.+       ..+-+..|+++.+++++.......            
T Consensus       295 ----~~ag~~~~~~~~~~~~~~~~~g~l----~~r~g-------~~~~~~~g~~~~~~~~~~l~~~~~------------  347 (495)
T PRK14995        295 ----LEAGMFMLPVMVASGFSGPIAGIL----VSRLG-------LRLVATGGMALSALSFYGLAMTDF------------  347 (495)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHH----HHHcC-------chHHHHHHHHHHHHHHHHHHHhcC------------
Confidence                123344444456666677777664    34432       223356688777777765544321            


Q ss_pred             ccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513          342 LEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH  414 (484)
Q Consensus       342 ~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~  414 (484)
                               ..+.++.....++.|+|-.+..+.....+.+.+|++.+|..+|++++...+|..+|..+.+.+.
T Consensus       348 ---------~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~  411 (495)
T PRK14995        348 ---------STQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLL  411 (495)
T ss_pred             ---------CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     1223344456788899999999888999999999999999999999999999999888877764

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.24  E-value=2.2e-10  Score=120.24  Aligned_cols=285  Identities=12%  Similarity=0.008  Sum_probs=154.1

Q ss_pred             HHHHHHH-HHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhh
Q 011513           34 LAFLFTG-LGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP  112 (484)
Q Consensus        34 ~~~~~~~-l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~  112 (484)
                      ...++++ +++.++|.|...+...+.+.+.+++    +   |.++.++.+.+.++|..+++.+.+++.+.+||+++|++.
T Consensus       107 ~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~~----~---r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~  179 (455)
T TIGR00892       107 VIELYLTAGFITGLGLAFNFQPSLTMLGKYFYR----R---RPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLIL  179 (455)
T ss_pred             HHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHh----h---HHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence            3444443 4677889887656666778888742    1   357889999999999999999999998889999999999


Q ss_pred             hHHHHHHHHHHHhccceeeecCCCCCchhhHHHHHHHHHHhccccCCCCCccccccCCCccccCCCCCCCCccccccccc
Q 011513          113 AFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAA  192 (484)
Q Consensus       113 ~~~~~l~~i~~l~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~  192 (484)
                      ++..++..+..++.++.-.  .++..+...          +.. ..+...     .        .....   .+..+.  
T Consensus       180 ~~~~~~~~v~~~~~~~~~~--~~~~~~~~~----------~~~-~~~~~~-----~--------~~~~~---~~~~~~--  228 (455)
T TIGR00892       180 GGLLLHCCVCGALMRPVGP--SQRVSKSKS----------KEG-LPPDGS-----T--------KKLSK---KSTAEK--  228 (455)
T ss_pred             HHHHHHHHHHHHHhCCCCc--ccccccccc----------ccc-CCCCCc-----c--------ccccc---cchhhh--
Confidence            9887766654443322100  000000000          000 000000     0        00000   000000  


Q ss_pred             ccCCccccccCCCCCCCcccCcchhHHHHHHhHhhHHHHHHHHHHHHHHhchhhHHHHHHHhcCCCCCCccccccccccc
Q 011513          193 IMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYA  272 (484)
Q Consensus       193 i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~~~~~~~~g~~g~~i~~~~~~  272 (484)
                                    ..++   ...+.-..+.+   ....+...+....+....+.+.....  +....    ....+.+.
T Consensus       229 --------------~~~~---~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~l~~~~~--~~g~s----~~~~g~~~  282 (455)
T TIGR00892       229 --------------INRF---LDFSLFTHRGF---LVYLSGNVIMFLGFFAPIIFLVPYAK--DKGVD----EYEAAFLL  282 (455)
T ss_pred             --------------hhhh---cchHHhcCchH---HHHHHHHHHHHHHccchHHHHHHHHH--HcCCC----HHHHHHHH
Confidence                          0000   00000001111   11112222222222222221111111  11111    11234555


Q ss_pred             hhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHH--HHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCc
Q 011513          273 IFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQR--MAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAIS  350 (484)
Q Consensus       273 ~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~k--i~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  350 (484)
                      ++..+..++..|+..++.    +|..     ....++  +.+++++.+++++.....                       
T Consensus       283 ~~~~~~~~~~~~~~g~l~----d~~~-----~~~~~~~~~~~~~~~~~l~~ll~~~~-----------------------  330 (455)
T TIGR00892       283 SIIGFVDIFARPSCGLIA----GLKW-----IRPHVQYLFSFALLFNGLTHLLCALA-----------------------  330 (455)
T ss_pred             HHHHHHHHHHHHHHHHHh----cccc-----cCHHHHHHHHHHHHHHHHHHHHHHHh-----------------------
Confidence            666677777777766642    2210     112222  333444444443332221                       


Q ss_pred             cchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513          351 SLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR  415 (484)
Q Consensus       351 ~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~  415 (484)
                       .+.++++...++.|++.....+...+.+.+.+|++.+|..+|+++...++|+.+|+.+.+.+.+
T Consensus       331 -~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~  394 (455)
T TIGR00892       331 -GDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVD  394 (455)
T ss_pred             -chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeeh
Confidence             2344556667888999988899999999999999999999999999999999999999987764

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.24  E-value=7.8e-10  Score=116.47  Aligned_cols=308  Identities=11%  Similarity=0.057  Sum_probs=167.8

Q ss_pred             hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhh
Q 011513           33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP  112 (484)
Q Consensus        33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~  112 (484)
                      +...+++++.+.++|.|...|...+++.|.+++++      |.+++++++.+.++|..+|+.+++++.+++||++.|++.
T Consensus        89 ~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~  162 (485)
T TIGR00711        89 NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK------RGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLIN  162 (485)
T ss_pred             CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhh
Confidence            56778899999999999999999999999998531      467899999999999999999999999999999999988


Q ss_pred             hHHHHHHHHHHHhccceeeecCCCCCchhhHHH--------HHHHHHHhccccCCCCCccccccCCCccccCCCCCCCCc
Q 011513          113 AFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQ--------VFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQ  184 (484)
Q Consensus       113 ~~~~~l~~i~~l~~~~~~~~~~p~~~pl~~~~~--------vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (484)
                      ++..++..++.++..+.-+  +.+..+......        .+.....+...    .    -|...            ..
T Consensus       163 ~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~----~----~~~~~------------~~  220 (485)
T TIGR00711       163 VPIGIIVVVVAFFILPRDK--PAASENFDFLGLLLLSVGLGSLLYGLSEGPE----R----GWFDS------------NE  220 (485)
T ss_pred             hHHHHHHHHHHHHHcCCcc--ccccCCCcHHHHHHHHHHHHHHHHHHhhCCC----C----CCCCc------------hH
Confidence            8776666655433322211  111111110000        00011111000    0    00000            00


Q ss_pred             cccccc-cc--ccCCccccccCCCCCCCcccCcchhHHHHHHhHhhHHHHHHHHHHHHHHhchhhHHHHHH-HhcCCCCC
Q 011513          185 FRCLDK-AA--IMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQA-LQSDRRVG  260 (484)
Q Consensus       185 ~~~l~~-a~--i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~-~~~~~~~g  260 (484)
                      ...... ..  ....... +...  ..+.   .+.+.-..+.+   ....+........+........... +..+.+  
T Consensus       221 ~~~~~~~~~~~~~~~~~~-~~~~--~~~~---~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s--  289 (485)
T TIGR00711       221 ILILSITGLVAIIAFVVW-ELTD--DNPL---VDLRLFKYRNF---TIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYT--  289 (485)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHcC--CCCc---cCHHHHcCCCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--
Confidence            000000 00  0000000 0000  0000   00000000111   1111111222222211111111111 111111  


Q ss_pred             CccccccccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCC
Q 011513          261 NTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPV  340 (484)
Q Consensus       261 ~~g~~i~~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~  340 (484)
                          ....+++.....+..++..|+..++    .+|.       +..+-+.+|.++.++++....+.-.           
T Consensus       290 ----~~~~g~~~~~~~~~~~~~~~~~g~l----~~r~-------~~~~~~~~g~~~~~~~~~~~~~~~~-----------  343 (485)
T TIGR00711       290 ----ALQAGLHILPVGLAPMLSSPIAGRM----GDKI-------DPRKLVTIGLILYAVGFYWRAFTFT-----------  343 (485)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHH----Hhhc-------CcHHHHHHHHHHHHHHHHHHhccCC-----------
Confidence                0112445555666777777776664    2332       2223456677777777666542110           


Q ss_pred             cccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513          341 GLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH  414 (484)
Q Consensus       341 ~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~  414 (484)
                               ...+.++++...++.|+|..+..+.......+..|++.+|..+|+.++...+|+.+|+.+.+.+.
T Consensus       344 ---------~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~  408 (485)
T TIGR00711       344 ---------PDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTIL  408 (485)
T ss_pred             ---------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     12344455566788999999888888888888899999999999999999999999988877764

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.22  E-value=3.6e-09  Score=112.10  Aligned_cols=86  Identities=12%  Similarity=0.069  Sum_probs=70.6

Q ss_pred             hhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeee-cccccccch
Q 011513           32 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQS-DVSWAWGLG  110 (484)
Q Consensus        32 ~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~-~~g~~~~F~  110 (484)
                      .+...+++.+.+.+++.+...+...++..|.+++++      +.++..+.-.+.++|.++++.+++++.+ ..||+..|+
T Consensus       105 ~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~------rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~  178 (491)
T PRK11010        105 TQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE------RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYW  178 (491)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHH
Confidence            456678888889999999999999999999998532      3567778889999999999999998888 479999999


Q ss_pred             hhhHHHHHHHHHH
Q 011513          111 IPAFMMFLSCAMF  123 (484)
Q Consensus       111 i~~~~~~l~~i~~  123 (484)
                      +.++.+++..+..
T Consensus       179 i~a~l~ll~~l~~  191 (491)
T PRK11010        179 LMAALLIPCIIAT  191 (491)
T ss_pred             HHHHHHHHHHHHH
Confidence            9887777665443

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.21  E-value=6.4e-10  Score=116.01  Aligned_cols=304  Identities=16%  Similarity=0.218  Sum_probs=183.6

Q ss_pred             HHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeec-ccccccchhhh
Q 011513           35 AFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSD-VSWAWGLGIPA  113 (484)
Q Consensus        35 ~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~-~g~~~~F~i~~  113 (484)
                      ..+.+.+++.|++.|...|++..+.+++.|.++      +..+.++.+.+..+|.+++..++|++-+. .||+..|++.+
T Consensus       129 ~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g  202 (466)
T KOG2532|consen  129 YLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFG  202 (466)
T ss_pred             hhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHH
Confidence            367899999999999999999999999999642      47899999999999999999999999888 99999999998


Q ss_pred             HHHHHHHHHHHhccceeeecCCCCCchhhHH--HHHHHHHHhccccCCCCCccccccCCCccccCCCCCCCCcccccccc
Q 011513          114 FMMFLSCAMFFLGSRLYAKVKPEGSPLASTV--QVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKA  191 (484)
Q Consensus       114 ~~~~l~~i~~l~~~~~~~~~~p~~~pl~~~~--~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  191 (484)
                      ++.++..++++..   |.+ .|+++|.....  +.+.   +.+..                    +              
T Consensus       203 ~~g~i~~~~w~~~---~~d-~P~~h~~is~~El~~I~---~~k~~--------------------~--------------  241 (466)
T KOG2532|consen  203 IVGLIWFILWFLF---YSD-SPSKHPNISEKELKYIE---KGKSE--------------------A--------------  241 (466)
T ss_pred             HHHHHHHHHHHHH---hcC-CcccCCCCCHHHHHHHH---hcccc--------------------c--------------
Confidence            8887777665432   333 35545432211  0000   00000                    0              


Q ss_pred             cccCCccccccCCCCCCCcccCcchhHHHHHHhHhhHHHHHHHH-------HHHHHHhchhhHHHHHHHhcCCCCCCccc
Q 011513          192 AIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAI-------VYYVALVQQQTYVVFQALQSDRRVGNTHF  264 (484)
Q Consensus       192 ~i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~-------~~~~~~~q~~t~~~~q~~~~~~~~g~~g~  264 (484)
                               ........||           |++++=.|+|...+       .++....++++ |..+..++|..      
T Consensus       242 ---------~~~~~~~vP~-----------~~i~ts~~vwai~~~~f~~~~~~~~l~~y~Pt-Y~~~VL~f~v~------  294 (466)
T KOG2532|consen  242 ---------HVKKKPPVPY-----------KAILTSPPVWAIWISAFGGNWGFYLLLTYLPT-YLKEVLGFDVR------  294 (466)
T ss_pred             ---------ccCCCCCCCH-----------HHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHhCCChh------
Confidence                     0000011244           33333334333322       22222223333 33333444422      


Q ss_pred             cccccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHH--HHHHHHHHHHHHHHHHHHHhhhhhccCCCcc
Q 011513          265 KIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMA--IGMILAIFTMIISGIIEDKRRSLALSRPVGL  342 (484)
Q Consensus       265 ~i~~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~--iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~  342 (484)
                        ..+++.+++.+...+...+.+.+.+.+.+|    ..+.+..+|+.  +++...+++++++++...             
T Consensus       295 --~~G~~salP~l~~~~~k~~~g~lsD~l~~~----~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~-------------  355 (466)
T KOG2532|consen  295 --ETGFLSALPFLAMAIVKFVAGQLSDRLTFR----ILSETTVRKIFNTIAFGGPAVFLLVLAFTSD-------------  355 (466)
T ss_pred             --hhhHHHHHHHHHHHHHHHHHHHHHHHHhhc----cCchHhHHHHHHhHHHHHHHHHHHeeeecCC-------------
Confidence              356777788887777777777765544433    11234455644  344444444544444321             


Q ss_pred             cccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcc---cCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccC
Q 011513          343 EQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQ---FPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKG  419 (484)
Q Consensus       343 ~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~---aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~  419 (484)
                               -.. |.  +.++++++..+..-...-+....   +|. ..+..+|+.+...++..+++|.+++.+.. .  
T Consensus       356 ---------~~~-~~--a~~~l~~~~~~~g~~~~Gf~~~~~~~apq-~a~~l~g~~~~~~~~~~~~~P~~vg~~~~-~--  419 (466)
T KOG2532|consen  356 ---------EHR-LL--AVILLTIAIGLSGFNISGFYKNHQDIAPQ-HAGFVMGIINFVGALAGFIAPLLVGIIVT-D--  419 (466)
T ss_pred             ---------Ccc-hH--HHHHHHHHHHHcccchhhhHhhhhhccch-HHHHHHHHHHHHHHHHHHHHHHheeeEeC-C--
Confidence                     011 21  22344444443333333333333   554 55899999999999999999999988763 1  


Q ss_pred             CCCCCCCCcCccCchhHHHHHHHHHHHHHHHHHHHHhh
Q 011513          420 ASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCA  457 (484)
Q Consensus       420 ~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~i~~~~~~  457 (484)
                      ++.++|          ...|++.+++.++..++|.+++
T Consensus       420 ~t~~eW----------~~VF~i~a~i~~~~~i~f~~f~  447 (466)
T KOG2532|consen  420 NTREEW----------RIVFLIAAGILIVGNIIFLFFG  447 (466)
T ss_pred             CCHHHH----------HHHHHHHHHHHHHhchheeEee
Confidence            122345          4688899999998888888775

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.19  E-value=4.1e-09  Score=106.92  Aligned_cols=88  Identities=13%  Similarity=0.135  Sum_probs=65.5

Q ss_pred             hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhh
Q 011513           33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP  112 (484)
Q Consensus        33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~  112 (484)
                      +...+++.+.+.+.+.+...|...++..|..+++   +| .+....++.+.+.++|..+|+.+++++.+++||++.|++.
T Consensus        86 ~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~  161 (375)
T TIGR00899        86 NYFLLLVLGVLLSSFASTANPQLFALAREHADRT---GR-EAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTA  161 (375)
T ss_pred             hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhc---ch-hhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHH
Confidence            4556667777777777778888888888876532   11 1112356777889999999999999998889999999998


Q ss_pred             hHHHHHHHHHHH
Q 011513          113 AFMMFLSCAMFF  124 (484)
Q Consensus       113 ~~~~~l~~i~~l  124 (484)
                      ++..++..++.+
T Consensus       162 ~~~~~~~~~~~~  173 (375)
T TIGR00899       162 ALAFVLCGVLVW  173 (375)
T ss_pred             HHHHHHHHHHHH
Confidence            887776665543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.19  E-value=2.6e-09  Score=112.41  Aligned_cols=86  Identities=12%  Similarity=0.107  Sum_probs=67.9

Q ss_pred             chhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheee--------eec
Q 011513           31 PWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYV--------QSD  102 (484)
Q Consensus        31 ~~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l--------~~~  102 (484)
                      ......+++++++.++|.|+..|...++++|++++++      |..+.++.-.+..+|.++++.++..+        .++
T Consensus       117 ~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~  190 (479)
T PRK10077        117 TGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNT  190 (479)
T ss_pred             hhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccc
Confidence            3456678899999999999999999999999998632      34577788888999999987765433        245


Q ss_pred             ccccccchhhhHHHHHHHHH
Q 011513          103 VSWAWGLGIPAFMMFLSCAM  122 (484)
Q Consensus       103 ~g~~~~F~i~~~~~~l~~i~  122 (484)
                      +||++.|++.++..++..+.
T Consensus       191 ~gWr~~f~~~~~~~~~~~~~  210 (479)
T PRK10077        191 DGWRYMFASEAIPALLFLML  210 (479)
T ss_pred             CChHHHHHHHHHHHHHHHHH
Confidence            79999999887777665544

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.16  E-value=1e-08  Score=104.30  Aligned_cols=87  Identities=14%  Similarity=0.156  Sum_probs=73.8

Q ss_pred             hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhh
Q 011513           33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP  112 (484)
Q Consensus        33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~  112 (484)
                      +...+++++.+.++|.+...|...+++.|.+++++      +.+.+++.+...++|..+++.+++++.++.+|++.|.+.
T Consensus        92 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~  165 (385)
T TIGR00710        92 NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------LSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFL  165 (385)
T ss_pred             cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            46678889999999999999999999999998531      467899999999999999999999998889999999988


Q ss_pred             hHHHHHHHHHHHh
Q 011513          113 AFMMFLSCAMFFL  125 (484)
Q Consensus       113 ~~~~~l~~i~~l~  125 (484)
                      ++..++..+..+.
T Consensus       166 ~~~~~~~~~~~~~  178 (385)
T TIGR00710       166 SLAGILLSALIFF  178 (385)
T ss_pred             HHHHHHHHHHHHH
Confidence            8777766655443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.16  E-value=5.5e-09  Score=108.24  Aligned_cols=78  Identities=9%  Similarity=0.139  Sum_probs=67.0

Q ss_pred             hhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchh
Q 011513           32 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGI  111 (484)
Q Consensus        32 ~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i  111 (484)
                      .+...+++++.+.++|.|...|...+++.|.+++++      |.++.+++..+.++|.++++.+.+++.+.+||++.|++
T Consensus       104 ~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i  177 (426)
T PRK12307        104 SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL------KSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFV  177 (426)
T ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH------hhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHH
Confidence            356788999999999999999999999999998632      35678888999999999999999998888999999987


Q ss_pred             hhHH
Q 011513          112 PAFM  115 (484)
Q Consensus       112 ~~~~  115 (484)
                      ..+.
T Consensus       178 ~~~~  181 (426)
T PRK12307        178 GLLP  181 (426)
T ss_pred             HHHH
Confidence            6543

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.15  E-value=1.9e-09  Score=108.74  Aligned_cols=86  Identities=15%  Similarity=0.021  Sum_probs=67.3

Q ss_pred             hhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchh
Q 011513           32 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGI  111 (484)
Q Consensus        32 ~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i  111 (484)
                      .+...+++++.+.++|.|...+.......+.++++       |..+.+++..+.++|.++++.+.+.+.+.+||++.|++
T Consensus        89 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~  161 (377)
T TIGR00890        89 DSLAALYLTYGLASAGVGIAYGIALNTAVKWFPDK-------RGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIY  161 (377)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCcc-------cHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHH
Confidence            35677888999999999988888888888887631       25688888999999998876666666666899999998


Q ss_pred             hhHHHHHHHHHHH
Q 011513          112 PAFMMFLSCAMFF  124 (484)
Q Consensus       112 ~~~~~~l~~i~~l  124 (484)
                      .++..++..+..+
T Consensus       162 ~~~~~~~~~~~~~  174 (377)
T TIGR00890       162 MGIIFLLVIVLGA  174 (377)
T ss_pred             HHHHHHHHHHHHH
Confidence            8887777665543

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.15  E-value=6.5e-09  Score=106.83  Aligned_cols=74  Identities=12%  Similarity=0.156  Sum_probs=52.9

Q ss_pred             cccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhhhHHHHHHHHHHH
Q 011513           47 GAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFF  124 (484)
Q Consensus        47 G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~~~~~~l~~i~~l  124 (484)
                      ..+...|...++..|+.+++   +|+ .....++...+.++|.++||.+++++.+++||+..|++.++..++..+..+
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~  191 (393)
T PRK15011        118 FGSTANPQMFALAREHADKT---GRE-AVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVW  191 (393)
T ss_pred             HHHhhHHHHHHHHHHHhhhc---cch-HHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence            33456777778887766432   211 112235777899999999999999999889999999988876666655443

>TIGR00895 2A0115 benzoate transport

Probab=99.14  E-value=9.8e-09  Score=104.50  Aligned_cols=85  Identities=11%  Similarity=0.097  Sum_probs=71.2

Q ss_pred             hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhh
Q 011513           33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP  112 (484)
Q Consensus        33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~  112 (484)
                      +...+++++.+.++|.|...|...+++.|.+++++      +..+++++..+.++|..+++.+++++.++.||++.|.+.
T Consensus       104 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~  177 (398)
T TIGR00895       104 NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF------RGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVG  177 (398)
T ss_pred             chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh------hchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhh
Confidence            45678889999999999999999999999998532      356888999999999999999999998889999999988


Q ss_pred             hHHHHHHHHHH
Q 011513          113 AFMMFLSCAMF  123 (484)
Q Consensus       113 ~~~~~l~~i~~  123 (484)
                      ++..++..++.
T Consensus       178 ~~~~~~~~~~~  188 (398)
T TIGR00895       178 GIAPLLLLLLL  188 (398)
T ss_pred             hhHHHHHHHHH
Confidence            65555554443

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.14  E-value=9.5e-09  Score=107.10  Aligned_cols=83  Identities=10%  Similarity=0.066  Sum_probs=69.1

Q ss_pred             hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhh
Q 011513           33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP  112 (484)
Q Consensus        33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~  112 (484)
                      +...+++.+++.+++.|...|...+.+.+++++++      +..++++++.+.++|..+++.+++++.+.+||++.|.+.
T Consensus       110 ~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~  183 (434)
T PRK11663        110 SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIA  183 (434)
T ss_pred             HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence            45667777888899999888999999999998532      467889999999999999999999998889999999988


Q ss_pred             hHHHHHHHH
Q 011513          113 AFMMFLSCA  121 (484)
Q Consensus       113 ~~~~~l~~i  121 (484)
                      ++..++..+
T Consensus       184 ~i~~~~~~~  192 (434)
T PRK11663        184 GIIAIVVGL  192 (434)
T ss_pred             HHHHHHHHH
Confidence            776555443

>TIGR00901 2A0125 AmpG-related permease

Probab=99.13  E-value=6.5e-09  Score=105.08  Aligned_cols=86  Identities=12%  Similarity=0.092  Sum_probs=68.9

Q ss_pred             hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeeccc--------
Q 011513           33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVS--------  104 (484)
Q Consensus        33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g--------  104 (484)
                      +...++....+.+++.+...|...+++.|.+++++      |..+.++...+.++|.++++.+++++..+.|        
T Consensus        82 ~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~  155 (356)
T TIGR00901        82 DLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITL  155 (356)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Confidence            44556666667788888899999999999997532      3568888899999999999999988887777        


Q ss_pred             ccccchhhhHHHHHHHHHHH
Q 011513          105 WAWGLGIPAFMMFLSCAMFF  124 (484)
Q Consensus       105 ~~~~F~i~~~~~~l~~i~~l  124 (484)
                      |+..|.+.++..+++.++.+
T Consensus       156 wr~~f~i~ai~~l~~~~~~~  175 (356)
T TIGR00901       156 WGYIFFWTALLILPGLLVTL  175 (356)
T ss_pred             cHHHHHHHHHHHHHHHHHHH
Confidence            99999999887777665433

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.13  E-value=8.5e-09  Score=106.82  Aligned_cols=86  Identities=10%  Similarity=-0.017  Sum_probs=70.8

Q ss_pred             hhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchh
Q 011513           32 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGI  111 (484)
Q Consensus        32 ~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i  111 (484)
                      .+...+++++++.++|.+..-+...+...|.+++++      +.+.++++..+.++|..+||.+++++.++.||++.|.+
T Consensus       102 ~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~  175 (413)
T PRK15403        102 TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAI  175 (413)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            356788999999999998766666778888887532      35688899999999999999999999888899999999


Q ss_pred             hhHHHHHHHHHH
Q 011513          112 PAFMMFLSCAMF  123 (484)
Q Consensus       112 ~~~~~~l~~i~~  123 (484)
                      .++..+++.+..
T Consensus       176 ~~~~~~i~~~~~  187 (413)
T PRK15403        176 IAVMGLIAFVGL  187 (413)
T ss_pred             HHHHHHHHHHHH
Confidence            888777766543

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.12  E-value=1.3e-08  Score=104.84  Aligned_cols=83  Identities=14%  Similarity=0.259  Sum_probs=71.8

Q ss_pred             hhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchh
Q 011513           32 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGI  111 (484)
Q Consensus        32 ~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i  111 (484)
                      .+.+.+++.+.+.+++.|...|...+++.|++++++      +..+..+.+.+.|+|.+++|.+++++.+.+||++.|++
T Consensus       106 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~------~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~  179 (394)
T PRK10213        106 NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT------VPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNA  179 (394)
T ss_pred             ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence            457789999999999999999999999999997532      46788999999999999999999999998999999998


Q ss_pred             hhHHHHHHH
Q 011513          112 PAFMMFLSC  120 (484)
Q Consensus       112 ~~~~~~l~~  120 (484)
                      .++..++..
T Consensus       180 ~~~l~~~~~  188 (394)
T PRK10213        180 AAVMGVLCI  188 (394)
T ss_pred             HHHHHHHHH
Confidence            776555544

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.11  E-value=1.2e-08  Score=104.89  Aligned_cols=76  Identities=14%  Similarity=0.206  Sum_probs=62.4

Q ss_pred             HHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhhhHHHH
Q 011513           38 FTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMF  117 (484)
Q Consensus        38 ~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~~~~~~  117 (484)
                      ++.+.+.++|.|++.|...+++.|.+++++      +.++.++.....++|.++||.++|++.+. .|...|.+.+...+
T Consensus        92 ~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~  164 (393)
T PRK11195         92 LLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYL  164 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            567889999999999999999999998632      46788999999999999999999999874 57777776665544


Q ss_pred             HHH
Q 011513          118 LSC  120 (484)
Q Consensus       118 l~~  120 (484)
                      ++.
T Consensus       165 ~~~  167 (393)
T PRK11195        165 LAA  167 (393)
T ss_pred             HHH
Confidence            443

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.11  E-value=2.3e-08  Score=101.67  Aligned_cols=86  Identities=16%  Similarity=0.155  Sum_probs=72.4

Q ss_pred             hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhh
Q 011513           33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP  112 (484)
Q Consensus        33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~  112 (484)
                      +...+++.+.+.+++.+...+...+++.|.+++++      +.+++++.+.+.++|..+++.+++++.+..+|++.|.+.
T Consensus        78 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~  151 (377)
T PRK11102         78 TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVL  151 (377)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHH
Confidence            45677888999999999999999999999987532      467899999999999999999999998888999999888


Q ss_pred             hHHHHHHHHHHH
Q 011513          113 AFMMFLSCAMFF  124 (484)
Q Consensus       113 ~~~~~l~~i~~l  124 (484)
                      ++..++..+...
T Consensus       152 ~~~~~~~~~~~~  163 (377)
T PRK11102        152 ALAAILAAALVF  163 (377)
T ss_pred             HHHHHHHHHHHH
Confidence            777766655443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.10  E-value=1.6e-08  Score=103.99  Aligned_cols=81  Identities=14%  Similarity=0.120  Sum_probs=64.1

Q ss_pred             hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecc-cccccchh
Q 011513           33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDV-SWAWGLGI  111 (484)
Q Consensus        33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~-g~~~~F~i  111 (484)
                      +...+++++++.++|.|...+...+.+.|+++++       +..+.+++..+.+.|..+|+.+++++.++. +|+..|.+
T Consensus        96 ~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~  168 (393)
T PRK09705         96 QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQQR-------TPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAW  168 (393)
T ss_pred             chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcccc-------chhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            4567889999999999999999999999988631       246778888899999999999999888765 89888766


Q ss_pred             hhHHHHHHH
Q 011513          112 PAFMMFLSC  120 (484)
Q Consensus       112 ~~~~~~l~~  120 (484)
                      .++..++..
T Consensus       169 ~~~~~~~~~  177 (393)
T PRK09705        169 WALPAVVAL  177 (393)
T ss_pred             HHHHHHHHH
Confidence            554444333

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.10  E-value=4.8e-10  Score=113.00  Aligned_cols=88  Identities=19%  Similarity=0.311  Sum_probs=78.7

Q ss_pred             hhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeeccc-ccccch
Q 011513           32 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVS-WAWGLG  110 (484)
Q Consensus        32 ~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g-~~~~F~  110 (484)
                      ...+.+.+.+.+.|+|.+.+-|..+++++|.|++++      |.+.|.+|||++++|+.+|.+.+.++.+.-+ |||+|.
T Consensus       119 ~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~------Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~  192 (493)
T KOG1330|consen  119 NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK------RSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFR  192 (493)
T ss_pred             HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchh------hhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEE
Confidence            567889999999999999999999999999999742      5789999999999999999999999988766 999999


Q ss_pred             hhhHHHHHHHHHHHh
Q 011513          111 IPAFMMFLSCAMFFL  125 (484)
Q Consensus       111 i~~~~~~l~~i~~l~  125 (484)
                      ..++.+++..++.++
T Consensus       193 ~~avl~vi~~~L~~~  207 (493)
T KOG1330|consen  193 GSAVLGVIVGLLVFL  207 (493)
T ss_pred             eehHHHHHHHHHHHh
Confidence            999999887776543

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.10  E-value=2e-08  Score=105.19  Aligned_cols=85  Identities=15%  Similarity=0.070  Sum_probs=63.2

Q ss_pred             hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHH-HHHhhhheeeeecccccccchh
Q 011513           33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAM-MISLTVIVYVQSDVSWAWGLGI  111 (484)
Q Consensus        33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~-~i~~~l~~~l~~~~g~~~~F~i  111 (484)
                      +...+++.+.+.+++.|...|...+...|++++++      +..+.++++.+.++|. +++++++..+....||++.|++
T Consensus       119 ~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i  192 (452)
T PRK11273        119 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYM  192 (452)
T ss_pred             cHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHH
Confidence            45677888889999999999988889999987532      3568888899999986 4566554333333599999999


Q ss_pred             hhHHHHHHHHHH
Q 011513          112 PAFMMFLSCAMF  123 (484)
Q Consensus       112 ~~~~~~l~~i~~  123 (484)
                      .++..++..++.
T Consensus       193 ~~~~~~~~~~l~  204 (452)
T PRK11273        193 PAFAAILVALFA  204 (452)
T ss_pred             HHHHHHHHHHHH
Confidence            887766654443

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.09  E-value=2e-08  Score=102.98  Aligned_cols=86  Identities=14%  Similarity=0.077  Sum_probs=71.1

Q ss_pred             hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhh
Q 011513           33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP  112 (484)
Q Consensus        33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~  112 (484)
                      +...+++++.+.+++.+...+...+++.|.+++++      |.+++++.+...++|..++|.+++++.+..||++.|.+.
T Consensus        90 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~  163 (392)
T PRK10473         90 TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTM  163 (392)
T ss_pred             cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHH
Confidence            45567888899999999999989999999987532      467889999999999999999999888778999999988


Q ss_pred             hHHHHHHHHHHH
Q 011513          113 AFMMFLSCAMFF  124 (484)
Q Consensus       113 ~~~~~l~~i~~l  124 (484)
                      ++..++..++.+
T Consensus       164 ~~~~~i~~~~~~  175 (392)
T PRK10473        164 AAMGILVLLLSL  175 (392)
T ss_pred             HHHHHHHHHHHH
Confidence            877766665533

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.08  E-value=3.3e-08  Score=101.09  Aligned_cols=68  Identities=7%  Similarity=-0.031  Sum_probs=55.8

Q ss_pred             hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeeccccc
Q 011513           33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWA  106 (484)
Q Consensus        33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~  106 (484)
                      +...+++++++.++|.|...|...+...|..++++      +.+.+++++.+.++|..+|+.+++++.+...+.
T Consensus        93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~  160 (381)
T PRK03633         93 GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN------RGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSV  160 (381)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhcccccccch
Confidence            56788899999999999998888877778776421      467899999999999999999999998754333

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.08  E-value=1.1e-08  Score=108.33  Aligned_cols=78  Identities=12%  Similarity=0.111  Sum_probs=66.8

Q ss_pred             hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhh
Q 011513           33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP  112 (484)
Q Consensus        33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~  112 (484)
                      +...+++++.+.+++.|+..+...+++.|.+++++      +..++++++.+.++|.++++.+.+++.+++||++.|.+.
T Consensus       107 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~  180 (496)
T PRK03893        107 GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL------RNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIG  180 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence            56778899999999999999999999999998531      456888999999999999999999998889999999875


Q ss_pred             hHHH
Q 011513          113 AFMM  116 (484)
Q Consensus       113 ~~~~  116 (484)
                      ++..
T Consensus       181 ~~~~  184 (496)
T PRK03893        181 ILPI  184 (496)
T ss_pred             HHHH
Confidence            4433

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.07  E-value=2.3e-08  Score=102.30  Aligned_cols=85  Identities=14%  Similarity=0.144  Sum_probs=70.2

Q ss_pred             hhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchh
Q 011513           32 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGI  111 (484)
Q Consensus        32 ~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i  111 (484)
                      .+.+.+++++.+.+++.|...|...++..|.+++++      +.++++++..+.++|..+++.+++++.+..||++.|.+
T Consensus        89 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~  162 (382)
T PRK10091         89 SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLL  162 (382)
T ss_pred             CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHH
Confidence            356788999999999999988888888888876521      34678888899999999999999999888999999999


Q ss_pred             hhHHHHHHHHH
Q 011513          112 PAFMMFLSCAM  122 (484)
Q Consensus       112 ~~~~~~l~~i~  122 (484)
                      .++..++..+.
T Consensus       163 ~~~~~~~~~~~  173 (382)
T PRK10091        163 IAVFNIAVLAS  173 (382)
T ss_pred             HHHHHHHHHHH
Confidence            88766665543

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.06  E-value=2.4e-08  Score=101.79  Aligned_cols=84  Identities=11%  Similarity=0.050  Sum_probs=67.9

Q ss_pred             hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhh
Q 011513           33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP  112 (484)
Q Consensus        33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~  112 (484)
                      +...+++++++.++|.|.. ++..+..+++++++   +   |.++.++...+.++|.++++++++++.+++||++.|.+.
T Consensus        78 ~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~---~---r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~  150 (368)
T TIGR00903        78 NYEWLLACQLLAALGQPFL-LNAFAPAASQIREE---R---RDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPI  150 (368)
T ss_pred             cHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHH---H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHH
Confidence            5778999999999999974 55556668888752   2   467899999999999999999999999889999999886


Q ss_pred             hHHHHHHHHHH
Q 011513          113 AFMMFLSCAMF  123 (484)
Q Consensus       113 ~~~~~l~~i~~  123 (484)
                      ++.-++..++.
T Consensus       151 ~~l~~~~~~~~  161 (368)
T TIGR00903       151 AAVAAAGIILV  161 (368)
T ss_pred             HHHHHHHHHHH
Confidence            66655554443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.04  E-value=1.6e-08  Score=105.04  Aligned_cols=267  Identities=12%  Similarity=0.119  Sum_probs=149.7

Q ss_pred             hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeee-------ecccc
Q 011513           33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQ-------SDVSW  105 (484)
Q Consensus        33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~-------~~~g~  105 (484)
                      +...+++...+.+++.+.+.+...++..+..++.  +|   |.+..++...+.++|.+++..+.+.+.       +..+|
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~--~~---R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~  172 (437)
T TIGR00792        98 KLVYAYITYILLGLFYSFVNIPYWSLVPAITLDP--RE---RESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGW  172 (437)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccHhhCcccccCCH--HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccH
Confidence            3455566667778888888888888888887542  22   456788888888998877765543332       34689


Q ss_pred             cccchhhhHHHHHHHHHHHhccceeeecCCCCCchhhHHHHHHHHHHhccccCCCCCccccccCCCccccCCCCCCCCcc
Q 011513          106 AWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQF  185 (484)
Q Consensus       106 ~~~F~i~~~~~~l~~i~~l~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (484)
                      ++.|.+.++..++..++.+...++.    ++..+..           + .   +  +                      .
T Consensus       173 ~~~~~i~~~l~~~~~~~~~~~~~e~----~~~~~~~-----------~-~---~--~----------------------~  209 (437)
T TIGR00792       173 FMFALVLALIGVVSLIICFFGTKER----YSEIPKN-----------I-E---K--K----------------------L  209 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCEec----CCCCCcc-----------c-c---c--C----------------------C
Confidence            9888888777766665443322211    1000000           0 0   0  0                      0


Q ss_pred             cccccccccCCccccccCCCCCCCcccCcchhHHHHHHhH---hhHHHHHHHHHHHHHHhchhhHHHHHHHhcCCCCCCc
Q 011513          186 RCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLI---RVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNT  262 (484)
Q Consensus       186 ~~l~~a~i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~---~~l~l~~~~~~~~~~~~q~~t~~~~q~~~~~~~~g~~  262 (484)
                      +.                              .+..|.++   .+..+.+.....+..+....+...+..   +...+  
T Consensus       210 ~~------------------------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--  254 (437)
T TIGR00792       210 SL------------------------------KQIFKALFKNDQLLILCLAYLFYNLAFNIKNGVQVYYF---TYVLG--  254 (437)
T ss_pred             CH------------------------------HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcchhheeE---eeecC--
Confidence            00                              00111111   111222222223332221111111100   00111  


Q ss_pred             cccccccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcc
Q 011513          263 HFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGL  342 (484)
Q Consensus       263 g~~i~~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~  342 (484)
                       ..-..+++..+..+..++..|+..++    .+|++       ..+-+.+|.++.+++++...+..              
T Consensus       255 -~~~~~~~~~~~~~i~~ii~~~~~~~l----~~r~g-------~~~~~~~~~~~~~~~~~~~~~~~--------------  308 (437)
T TIGR00792       255 -DPELFSYMGSIAIVAGLIGVLLFPRL----VKKFG-------RKILFAGGILLMVLGYLIFFFAG--------------  308 (437)
T ss_pred             -ChHHHHHHHHHHHHHHHHHHHHHHHH----HHHhC-------cHHHHHHHHHHHHHHHHHHHHcc--------------
Confidence             00012344455556666667766654    34432       22346677777777766654421              


Q ss_pred             cccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccC-------chhhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513          343 EQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFP-------ENMRSIGGSLAFVGFAISNYLNGFLISMVHR  415 (484)
Q Consensus       343 ~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP-------~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~  415 (484)
                               .+.++.+...++.+++.....+...+++.+.+|       ++.+|.++|++++...+|..+++.+.+.+.+
T Consensus       309 ---------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~  379 (437)
T TIGR00792       309 ---------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILG  379 (437)
T ss_pred             ---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     123344556678889998888888999888776       5678999999999999999999999888765


Q ss_pred             cc
Q 011513          416 FT  417 (484)
Q Consensus       416 ~~  417 (484)
                      ..
T Consensus       380 ~~  381 (437)
T TIGR00792       380 II  381 (437)
T ss_pred             Hc
Confidence            44

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.04  E-value=8.6e-09  Score=106.82  Aligned_cols=137  Identities=11%  Similarity=0.065  Sum_probs=93.2

Q ss_pred             cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513          269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA  348 (484)
Q Consensus       269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  348 (484)
                      +.+.+++.+..++..++.+++    .+|+.       ..+.+.++.++.++++...++.                     
T Consensus       265 g~~~~~~~~~~~~~~~~~g~l----~dr~g-------~~~~~~~~~~l~~~~~~l~~~~---------------------  312 (420)
T PRK09528        265 GYLNSFQVFLEALIMFFAPFI----INRIG-------AKNALLLAGTIMAVRIIGSGFA---------------------  312 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHHhC-------cchhhHHHHHHHHHHHHHHHhc---------------------
Confidence            455666666666777766664    34432       2233666777777766665543                     


Q ss_pred             CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhh-HHHHHHHHHHHHHHHhHhhcccccCCCCCCCCC
Q 011513          349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSL-AFVGFAISNYLNGFLISMVHRFTKGASTGDWLP  427 (484)
Q Consensus       349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl-~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~  427 (484)
                         .++++++...++.+++.....+...+++.+..|++.++...+. +++..++|..+++.+.+.+.+..      +   
T Consensus       313 ---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~------G---  380 (420)
T PRK09528        313 ---TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSI------G---  380 (420)
T ss_pred             ---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhh------C---
Confidence               2345666777888888888888888999999999999987665 66778899999999988876432      1   


Q ss_pred             cCccCchhHHHHHHHHHHHHHHHHHHHHh
Q 011513          428 EDLNKGRLDYFYYLVAALGLLNFGFFLLC  456 (484)
Q Consensus       428 ~~ln~~~~~~~f~~la~l~~~~~i~~~~~  456 (484)
                             +...|...+++.++..++..+.
T Consensus       381 -------~~~~f~~~~~~~~i~~~~~~~~  402 (420)
T PRK09528        381 -------FQGTYLILGGIVLLFTLISVFT  402 (420)
T ss_pred             -------chHHHHHHHHHHHHHHHHHHHH
Confidence                   2346666677666655544443

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.04  E-value=7e-08  Score=102.25  Aligned_cols=77  Identities=16%  Similarity=0.120  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheee----e----eccccc
Q 011513           35 AFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYV----Q----SDVSWA  106 (484)
Q Consensus        35 ~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l----~----~~~g~~  106 (484)
                      ..+.+++++.|+|.|+..|+..++++|.+|+++      |..+..+...+.++|.++|+.+...+    .    .++||+
T Consensus       119 ~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~------Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR  192 (490)
T PRK10642        119 ILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK------RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWR  192 (490)
T ss_pred             HHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHH
Confidence            358899999999999999999999999998632      23466677777888888777554332    1    258999


Q ss_pred             ccchhhhHHHH
Q 011513          107 WGLGIPAFMMF  117 (484)
Q Consensus       107 ~~F~i~~~~~~  117 (484)
                      +.|++.++..+
T Consensus       193 ~~f~i~~~~~l  203 (490)
T PRK10642        193 IPFFIALPLGI  203 (490)
T ss_pred             HHHHHHHHHHH
Confidence            99998665444

>PRK03699 putative transporter; Provisional

Probab=99.03  E-value=5.2e-08  Score=100.11  Aligned_cols=84  Identities=13%  Similarity=0.163  Sum_probs=66.4

Q ss_pred             hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeee-ecccccccchh
Q 011513           33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQ-SDVSWAWGLGI  111 (484)
Q Consensus        33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~-~~~g~~~~F~i  111 (484)
                      +...+++++.+.+++.|...+...+.+.+.++++   +   +....+..+...++|+.++|.+.+++. ++.||++.|.+
T Consensus        94 ~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~---~---r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~  167 (394)
T PRK03699         94 SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGK---Q---RGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYAC  167 (394)
T ss_pred             hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccc---h---HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence            4667888999999999999999999999999652   1   345667777888999999999887764 45799999998


Q ss_pred             hhHHHHHHHHH
Q 011513          112 PAFMMFLSCAM  122 (484)
Q Consensus       112 ~~~~~~l~~i~  122 (484)
                      .++..++..++
T Consensus       168 ~~~~~~~~~~~  178 (394)
T PRK03699        168 IGLVYVAIFIL  178 (394)
T ss_pred             HHHHHHHHHHH
Confidence            77766655543

>PRK11043 putative transporter; Provisional

Probab=99.03  E-value=7.3e-08  Score=99.10  Aligned_cols=85  Identities=9%  Similarity=0.024  Sum_probs=69.2

Q ss_pred             hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhh
Q 011513           33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP  112 (484)
Q Consensus        33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~  112 (484)
                      +...+++++.+.++|.+...+...+++.|.+++++      +.+.++......++|..++|.+++++.+++||++.|.+.
T Consensus        93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~  166 (401)
T PRK11043         93 SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATL  166 (401)
T ss_pred             CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence            45677888899999988888888899999987531      356778888889999999999999999889999999988


Q ss_pred             hHHHHHHHHHH
Q 011513          113 AFMMFLSCAMF  123 (484)
Q Consensus       113 ~~~~~l~~i~~  123 (484)
                      ++..++..+..
T Consensus       167 ~~~~~~~~~~~  177 (401)
T PRK11043        167 FAITLLLILPT  177 (401)
T ss_pred             HHHHHHHHHHH
Confidence            77766665443

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.03  E-value=4.6e-08  Score=100.32  Aligned_cols=84  Identities=7%  Similarity=0.012  Sum_probs=67.3

Q ss_pred             hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhh
Q 011513           33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP  112 (484)
Q Consensus        33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~  112 (484)
                      +...+++++.+.+++.|...+...++..|.+++++      +..+.++...+..+|.+++|.+++++.++.||++.|.+.
T Consensus        95 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~  168 (394)
T PRK11652         95 SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ------LRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFL  168 (394)
T ss_pred             cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Confidence            45678888999999999888888888888876421      356777788899999999999999998888999999987


Q ss_pred             hHHHHHHHHH
Q 011513          113 AFMMFLSCAM  122 (484)
Q Consensus       113 ~~~~~l~~i~  122 (484)
                      ++..++..+.
T Consensus       169 ~~~~~~~~~~  178 (394)
T PRK11652        169 LLLGAGVTFS  178 (394)
T ss_pred             HHHHHHHHHH
Confidence            7665554443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.03  E-value=2.7e-08  Score=104.68  Aligned_cols=86  Identities=8%  Similarity=0.016  Sum_probs=67.4

Q ss_pred             hhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecc---ccccc
Q 011513           32 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDV---SWAWG  108 (484)
Q Consensus        32 ~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~---g~~~~  108 (484)
                      .+...+++.+.+.++|.|..-|...+.++|++++++      +..+++++..+.++|.++++.+..++.+..   +|+..
T Consensus       120 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~  193 (467)
T PRK09556        120 VSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGM  193 (467)
T ss_pred             chHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhH
Confidence            457788899999999999999999999999998642      245777788999999999998887665532   58888


Q ss_pred             chhhhHHHHHHHHHH
Q 011513          109 LGIPAFMMFLSCAMF  123 (484)
Q Consensus       109 F~i~~~~~~l~~i~~  123 (484)
                      |.+.++..++..++.
T Consensus       194 f~~~g~~~~~~~i~~  208 (467)
T PRK09556        194 FIFPSIIALIIGFIG  208 (467)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888776666554443

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.02  E-value=7.9e-08  Score=100.10  Aligned_cols=81  Identities=15%  Similarity=0.239  Sum_probs=63.9

Q ss_pred             hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeee--------eccc
Q 011513           33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQ--------SDVS  104 (484)
Q Consensus        33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~--------~~~g  104 (484)
                      ....+.+.+++.++|.|+..|...++++|.+|+++      |..+.++.+.+.+.|.++++.+...+.        ..+|
T Consensus       123 ~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g  196 (432)
T PRK10406        123 APALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR------KGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWG  196 (432)
T ss_pred             HHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc------ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccc
Confidence            34578899999999999999999999999998632      245777888899999998887655443        2589


Q ss_pred             ccccchhhhHHHHHH
Q 011513          105 WAWGLGIPAFMMFLS  119 (484)
Q Consensus       105 ~~~~F~i~~~~~~l~  119 (484)
                      |++.|++.++..++.
T Consensus       197 Wr~~F~i~~~~~ll~  211 (432)
T PRK10406        197 WRIPFALGAVLAVVA  211 (432)
T ss_pred             hHHHHHHHHHHHHHH
Confidence            999998876655443

>TIGR00898 2A0119 cation transport protein

Probab=99.02  E-value=5.8e-08  Score=103.05  Aligned_cols=82  Identities=13%  Similarity=0.212  Sum_probs=66.4

Q ss_pred             hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhh
Q 011513           33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP  112 (484)
Q Consensus        33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~  112 (484)
                      +...+++++++.++|.|+..|...+++.|.+++++      |..+..+...+..+|.++++.++.++.+   |++.|++.
T Consensus       179 ~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~  249 (505)
T TIGR00898       179 NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAV  249 (505)
T ss_pred             cHHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHH
Confidence            46678889999999999999999999999998632      3456777778889999999988777654   99999988


Q ss_pred             hHHHHHHHHHH
Q 011513          113 AFMMFLSCAMF  123 (484)
Q Consensus       113 ~~~~~l~~i~~  123 (484)
                      ++..++..+..
T Consensus       250 ~i~~~~~~~~~  260 (505)
T TIGR00898       250 SLPTFLFFLLS  260 (505)
T ss_pred             HHHHHHHHHHH
Confidence            87776665544

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.02  E-value=4.1e-08  Score=114.60  Aligned_cols=268  Identities=11%  Similarity=0.018  Sum_probs=149.0

Q ss_pred             hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeec--------c-
Q 011513           33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSD--------V-  103 (484)
Q Consensus        33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~--------~-  103 (484)
                      +...+++++++.+++.|.+.|...++++|.+++++      +..+++++..+.++|.++|+.+++++...        . 
T Consensus       102 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~  175 (1146)
T PRK08633        102 WFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------LSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEIL  175 (1146)
T ss_pred             cHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------chhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Confidence            36788899999999999999999999999998632      35789999999999999999999988764        2 


Q ss_pred             cccccchhhhHHHHHHHHHHHhccceeeecCCCCCchhhHHHHHHHHHHhccccCCCCCccccccCCCccccCCCCCCCC
Q 011513          104 SWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTG  183 (484)
Q Consensus       104 g~~~~F~i~~~~~~l~~i~~l~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (484)
                      +|.+.+.+..+...+..+++.+..+.    .|..++...          ++.      .                     
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~----------~~~------~---------------------  214 (1146)
T PRK08633        176 GRIAPAGLVLLAVAVLGLIFAYRLPK----VPAAAPEVF----------DKK------K---------------------  214 (1146)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhcCcC----CCCCCcccc----------ccc------c---------------------
Confidence            23333333322222222222221111    111110000          000      0                     


Q ss_pred             cccccccccccCCccccccCCCCCCCcccCcchhHHHHHHhH---hhHHHHHHHHHHHHHHhchhhHHHHH-HHhcCCCC
Q 011513          184 QFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLI---RVIPIWASAIVYYVALVQQQTYVVFQ-ALQSDRRV  259 (484)
Q Consensus       184 ~~~~l~~a~i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~---~~l~l~~~~~~~~~~~~q~~t~~~~q-~~~~~~~~  259 (484)
                         +...                        ....+..+.++   .+..+.+...+++.......+.+... ....... 
T Consensus       215 ---~~~~------------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s-  266 (1146)
T PRK08633        215 ---YLFP------------------------KLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLD-  266 (1146)
T ss_pred             ---cccH------------------------HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCC-
Confidence               0000                        00000001000   01111122222222222111211111 1111111 


Q ss_pred             CCccccccccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCC
Q 011513          260 GNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRP  339 (484)
Q Consensus       260 g~~g~~i~~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g  339 (484)
                          -....+++.+...+..++..++.+++    .+|.       ...+.+.+|.++.+++++...+.            
T Consensus       267 ----~~~~~g~~~~~~~ig~~~g~~~~g~l----~~r~-------~~~~~~~~~~~~~~~~~~~~~~~------------  319 (1146)
T PRK08633        267 ----NTFQVQYLLAASAIGIGIGSLLAGRL----SGRH-------IELGLVPLGALGLALSLFLLPTA------------  319 (1146)
T ss_pred             ----cHHHHHHHHHHHHHHHHHHHHHHHHH----hCCc-------eEccchhHHHHHHHHHHHHHHHh------------
Confidence                00012444555555556666655553    2332       22234556666666666555442            


Q ss_pred             CcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513          340 VGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH  414 (484)
Q Consensus       340 ~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~  414 (484)
                                  .+.++++...++.+++..+..+...+++.+.+|++.||.++|+.++...+|..+++.++..+.
T Consensus       320 ------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~  382 (1146)
T PRK08633        320 ------------PSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFS  382 (1146)
T ss_pred             ------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence                        134556667788899999988999999999999999999999999999999988777766553

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.00  E-value=1.4e-07  Score=97.32  Aligned_cols=84  Identities=14%  Similarity=0.105  Sum_probs=67.1

Q ss_pred             hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeec-ccccccchh
Q 011513           33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSD-VSWAWGLGI  111 (484)
Q Consensus        33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~-~g~~~~F~i  111 (484)
                      +.+.+++...+.++..+...|...++..|.+++++      |.++..+..++.++|.++++.+.+++.+. .||+..|++
T Consensus        93 ~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i  166 (402)
T PRK11902         93 ALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLL  166 (402)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHH
Confidence            45566666667788899999999999999987532      35678888899999999999988888775 599999999


Q ss_pred             hhHHHHHHHHH
Q 011513          112 PAFMMFLSCAM  122 (484)
Q Consensus       112 ~~~~~~l~~i~  122 (484)
                      .++..++..+.
T Consensus       167 ~a~~~l~~~l~  177 (402)
T PRK11902        167 MAGLMLAGALT  177 (402)
T ss_pred             HHHHHHHHHHH
Confidence            88877665543

>TIGR00889 2A0110 nucleoside transporter

Probab=99.00  E-value=8.8e-08  Score=99.41  Aligned_cols=150  Identities=15%  Similarity=0.136  Sum_probs=98.9

Q ss_pred             cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513          269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA  348 (484)
Q Consensus       269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  348 (484)
                      +...+++.+..++...+.+++    .+|.       +..+-+.++.++.++++........                   
T Consensus       254 g~~~~~~~i~~i~~~~~~g~l----~dr~-------g~r~~l~~~~~~~~v~~~l~~~~~~-------------------  303 (418)
T TIGR00889       254 SIWMSLSQFSEIFFILTIPFF----LKRF-------GIKKVMLLSLVAWALRFGFFAYGDP-------------------  303 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHHh-------CcHHHHHHHHHHHHHHHHHHHHcCc-------------------
Confidence            344555555666666655554    3443       2334466777777777655544210                   


Q ss_pred             CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHH-HHHHHHHHHHHHHhHhhcccccCCCCCCCCC
Q 011513          349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAF-VGFAISNYLNGFLISMVHRFTKGASTGDWLP  427 (484)
Q Consensus       349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~-l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~  427 (484)
                       ...+.+.++...++.++++.+..+....++.+.+|++.||.++|+.+ ...++|..+|+.+++.+.+..+..+.-+   
T Consensus       304 -~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~---  379 (418)
T TIGR00889       304 -EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFD---  379 (418)
T ss_pred             -chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCc---
Confidence             01123334456688999999999999999999999999999999997 5678999999999988765431000001   


Q ss_pred             cCccCchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 011513          428 EDLNKGRLDYFYYLVAALGLLNFGFFLLCAKW  459 (484)
Q Consensus       428 ~~ln~~~~~~~f~~la~l~~~~~i~~~~~~~~  459 (484)
                             ++..|...++++++..++++++.|.
T Consensus       380 -------~~~~f~~~~~~~~i~~~l~~~~~~~  404 (418)
T TIGR00889       380 -------WQTMWLFFAGYIAILAVLFMIFFKY  404 (418)
T ss_pred             -------hHHHHHHHHHHHHHHHHHHHHHhCC
Confidence                   3456777777777777766666653

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.00  E-value=9.1e-08  Score=97.09  Aligned_cols=82  Identities=9%  Similarity=0.132  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeee--------ecccc
Q 011513           34 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQ--------SDVSW  105 (484)
Q Consensus        34 ~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~--------~~~g~  105 (484)
                      ...+++++.+.++|.|...|...+++.|.+++++      |.....+.+.+.++|.++++.+.+.+.        +.++|
T Consensus        96 ~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w  169 (394)
T TIGR00883        96 PILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGW  169 (394)
T ss_pred             HHHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccch
Confidence            3468888999999999999999999999987532      356888888999999999988765542        35789


Q ss_pred             cccchhhhHHHHHHHH
Q 011513          106 AWGLGIPAFMMFLSCA  121 (484)
Q Consensus       106 ~~~F~i~~~~~~l~~i  121 (484)
                      ++.|.+.++..+++..
T Consensus       170 ~~~~~~~~~~~~~~~~  185 (394)
T TIGR00883       170 RIPFLVSAVLVLIGLY  185 (394)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999887766655543

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.98  E-value=1.2e-07  Score=95.81  Aligned_cols=89  Identities=13%  Similarity=0.182  Sum_probs=78.9

Q ss_pred             chhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccch
Q 011513           31 PWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLG  110 (484)
Q Consensus        31 ~~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~  110 (484)
                      ..+...+.+++++.++..|.+.+...+..+|..|+++      +.++..+.+.+..++-++|..++.++.+.+|||..|+
T Consensus        98 Ap~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~------~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~  171 (394)
T COG2814          98 APSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK------RGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFL  171 (394)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------hhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHH
Confidence            4567899999999999999999999999999999753      3679999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHh
Q 011513          111 IPAFMMFLSCAMFFL  125 (484)
Q Consensus       111 i~~~~~~l~~i~~l~  125 (484)
                      +-+..-++.++..+.
T Consensus       172 ~ia~l~ll~~~~~~~  186 (394)
T COG2814         172 AIAVLALLALLLLWK  186 (394)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888777777766554

>PRK09952 shikimate transporter; Provisional

Probab=98.97  E-value=1.7e-07  Score=97.93  Aligned_cols=79  Identities=9%  Similarity=0.139  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeee--------ecccc
Q 011513           34 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQ--------SDVSW  105 (484)
Q Consensus        34 ~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~--------~~~g~  105 (484)
                      ...+.+.+.+.++|.|+..|...+++.|.+|++   +   |....+....+.++|.+++..+..++.        ..+||
T Consensus       125 ~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~---~---rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gW  198 (438)
T PRK09952        125 PVLLVTLRAIQGFAVGGEWGGAALLAVESAPKN---K---KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGW  198 (438)
T ss_pred             HHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCC---C---CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccCh
Confidence            336888999999999999999999999998863   2   234566777888888888876655543        24799


Q ss_pred             cccchhhhHHHHH
Q 011513          106 AWGLGIPAFMMFL  118 (484)
Q Consensus       106 ~~~F~i~~~~~~l  118 (484)
                      ++.|++.++..++
T Consensus       199 r~~f~~~~~~~l~  211 (438)
T PRK09952        199 RIPFLFSIVLVLI  211 (438)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999987765433

>TIGR00788 fbt folate/biopterin transporter

Probab=98.97  E-value=1.2e-08  Score=107.42  Aligned_cols=83  Identities=11%  Similarity=-0.016  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhhhHH
Q 011513           36 FLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFM  115 (484)
Q Consensus        36 ~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~~~~  115 (484)
                      ...+.+.+.+++.+.......++..|+.+ ++++   ......++.|.+.++|.++|+.++|++.+.++|+..|++.++.
T Consensus       122 ~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~---~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l  197 (468)
T TIGR00788       122 VAAAFIFLAALAKALYDVLVDSLYSERIR-ESPS---AGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAAL  197 (468)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCC---cCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHH
Confidence            34447889999999999999999999998 3322   1345677999999999999999999999989999999998888


Q ss_pred             HHHHHHH
Q 011513          116 MFLSCAM  122 (484)
Q Consensus       116 ~~l~~i~  122 (484)
                      .++..+.
T Consensus       198 ~ll~~~~  204 (468)
T TIGR00788       198 LLLQLFV  204 (468)
T ss_pred             HHHHHHH
Confidence            8777443

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.94  E-value=3.7e-08  Score=99.43  Aligned_cols=86  Identities=14%  Similarity=0.154  Sum_probs=70.4

Q ss_pred             hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHh-hhheeeeecccccccchh
Q 011513           33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISL-TVIVYVQSDVSWAWGLGI  111 (484)
Q Consensus        33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~-~l~~~l~~~~g~~~~F~i  111 (484)
                      +...+++++.+.+++.|...|...+++.|.+++++      +.+++++...+.++|..+++ ++++.+.+..+|++.|.+
T Consensus        82 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  155 (379)
T TIGR00881        82 SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIV  155 (379)
T ss_pred             hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHH
Confidence            56788899999999999999999999999998632      34577888899999999999 566777777899999998


Q ss_pred             hhHHHHHHHHHHH
Q 011513          112 PAFMMFLSCAMFF  124 (484)
Q Consensus       112 ~~~~~~l~~i~~l  124 (484)
                      .++..++..++.+
T Consensus       156 ~~~~~~~~~~~~~  168 (379)
T TIGR00881       156 PGIIAIIVSLICF  168 (379)
T ss_pred             HHHHHHHHHHHHh
Confidence            8877766555444

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.93  E-value=3.8e-08  Score=98.54  Aligned_cols=86  Identities=9%  Similarity=0.077  Sum_probs=71.4

Q ss_pred             hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhh--eeeeecccccccch
Q 011513           33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVI--VYVQSDVSWAWGLG  110 (484)
Q Consensus        33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~--~~l~~~~g~~~~F~  110 (484)
                      +...+.+-..+.+.-+|.--|.+...++.+|++++      |.+..++.-.+.|+|+.+.++++  +++..+++|+.+|+
T Consensus       116 s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e------RG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~  189 (448)
T COG2271         116 SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE------RGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFY  189 (448)
T ss_pred             HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc------cCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHH
Confidence            67778888889999999999999999999999642      23455666699999999999999  99999899999999


Q ss_pred             hhhHHHHHHHHHHH
Q 011513          111 IPAFMMFLSCAMFF  124 (484)
Q Consensus       111 i~~~~~~l~~i~~l  124 (484)
                      +++++-++..++.+
T Consensus       190 ~pgiiaiival~~~  203 (448)
T COG2271         190 FPGIIAIIVALILL  203 (448)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99977666555443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.93  E-value=1.2e-07  Score=98.92  Aligned_cols=86  Identities=14%  Similarity=0.072  Sum_probs=68.2

Q ss_pred             hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhhee-eeecccccccchh
Q 011513           33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVY-VQSDVSWAWGLGI  111 (484)
Q Consensus        33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~-l~~~~g~~~~F~i  111 (484)
                      +...+++.+.+.+++.|...|.....+.|.+++++      +..++++++.+.++|..+++.+.+. +..+.+|+.+|++
T Consensus       117 ~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~  190 (438)
T TIGR00712       117 SIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYF  190 (438)
T ss_pred             hHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHH
Confidence            35567788889999999999999999999998632      3578889999999999999877665 4445799999999


Q ss_pred             hhHHHHHHHHHHH
Q 011513          112 PAFMMFLSCAMFF  124 (484)
Q Consensus       112 ~~~~~~l~~i~~l  124 (484)
                      .++..++..+..+
T Consensus       191 ~~~~~~i~~~~~~  203 (438)
T TIGR00712       191 PAICAIIVALFAF  203 (438)
T ss_pred             HHHHHHHHHHHHH
Confidence            8887777655443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK09848 glucuronide transporter; Provisional

Probab=98.92  E-value=5e-08  Score=102.05  Aligned_cols=91  Identities=10%  Similarity=0.057  Sum_probs=69.7

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccC
Q 011513          305 TILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFP  384 (484)
Q Consensus       305 s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP  384 (484)
                      +..+.+.+|+++.+++++...+..                      ..+.++++...++.++|+.+..+...++..+.+|
T Consensus       292 g~~~~~~~g~~~~~i~~~~~~~~~----------------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~  349 (448)
T PRK09848        292 GKKNTFLIGALLGTCGYLLFFWVS----------------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVE  349 (448)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHcC----------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            344557778888777776654321                      1345555566788999999999999999999988


Q ss_pred             ch-------hhhhHHhhHHHHHHHHHHHHHHHhHhhcccc
Q 011513          385 EN-------MRSIGGSLAFVGFAISNYLNGFLISMVHRFT  417 (484)
Q Consensus       385 ~~-------~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~  417 (484)
                      ++       .+|.++|++.+...+|..+|+.+.+.+....
T Consensus       350 ~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~  389 (448)
T PRK09848        350 YGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLS  389 (448)
T ss_pred             hhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            65       5699999999999999999999888765444

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.90  E-value=1.8e-07  Score=96.10  Aligned_cols=285  Identities=8%  Similarity=-0.037  Sum_probs=154.1

Q ss_pred             HHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhhhHH
Q 011513           36 FLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFM  115 (484)
Q Consensus        36 ~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~~~~  115 (484)
                      .+.++.++.+++.+...|...++..|.-++        ....|++.....|+|.++|+.+++.+.+ ++|++.|.+.++.
T Consensus       101 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~  171 (396)
T TIGR00882       101 GAIVGGLYLGFVFSAGAGAIEAYIEKVSRN--------SNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGF  171 (396)
T ss_pred             HHHHHHHHHHHHhccchhhHHHHHHHhhhh--------cccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHH
Confidence            345556677888888888887776654221        1236677788899999999999999876 6999999988877


Q ss_pred             HHHHHHHHHhccceeeecCCCCCchhhHHHHHHHHHHhccccCCCCCccccccCCCccccCCCCCCCCcccccccccccC
Q 011513          116 MFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMT  195 (484)
Q Consensus       116 ~~l~~i~~l~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~i~~  195 (484)
                      .++..++.+...   + ++|+++..            ++..+.+  ..                .+    +..+..    
T Consensus       172 ~~~~~~~~~~~~---~-~~~~~~~~------------~~~~~~~--~~----------------~~----~~~~~~----  209 (396)
T TIGR00882       172 ALILMLLLMFAK---P-KAPSSATV------------ANALGAN--AS----------------AF----SLKLAL----  209 (396)
T ss_pred             HHHHHHHHHHhC---C-CCchhhhh------------hcccccc--cC----------------CC----CHHHHH----
Confidence            776654433211   1 11111000            0000000  00                00    000000    


Q ss_pred             CccccccCCCCCCCcccCcchhHHHHHHhHhhHHHHHHHHHHHHHHhchh---hHHHHHHHhcCC-CCCCcccccccccc
Q 011513          196 PEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQ---TYVVFQALQSDR-RVGNTHFKIPAASY  271 (484)
Q Consensus       196 ~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~---t~~~~q~~~~~~-~~g~~g~~i~~~~~  271 (484)
                                          +..++ |.+..++..   .......+.+..   ..+.  ....+. ..+   .+ ..+..
T Consensus       210 --------------------~~l~~-~~~~~~~l~---~~~~~~~~~~~~~~~~~y~--~~~~~~~~~~---~~-~~g~~  259 (396)
T TIGR00882       210 --------------------ELFRQ-RKFWMFVLY---VVGVACVYDVFDQQFANFF--TSFFATPQQG---TR-VFGYV  259 (396)
T ss_pred             --------------------HHHcC-CcHHHHHHH---HHHHHHHHHHHHHHHHHHH--HHhccccccc---hH-HHHHH
Confidence                                00001 111111221   222222222222   2222  122111 111   00 12344


Q ss_pred             chhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCcc
Q 011513          272 AIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISS  351 (484)
Q Consensus       272 ~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  351 (484)
                      .++..+..++..+...++    .+|..       ..+-+.+|.++.++++......                        
T Consensus       260 ~~~~~i~~~~~~~~~g~l----~~r~g-------~~~~l~~~~~l~~l~~~~~~~~------------------------  304 (396)
T TIGR00882       260 TTMGELLNALIMFCAPLI----INRIG-------AKNALLIAGTIMSVRIIGSSFA------------------------  304 (396)
T ss_pred             HHHHHHHHHHHHHHHHHH----HHHhc-------cchhHHHHHHHHHHHHHHHHhc------------------------
Confidence            455555555555544443    33332       2233667777777766553331                        


Q ss_pred             chHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhh-HHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCcCc
Q 011513          352 LSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSL-AFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDL  430 (484)
Q Consensus       352 ~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl-~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~l  430 (484)
                      .+.++++...++.+++.........++..+..|++.+++..+. +.....+|+.+++.+.+.+.+..      +      
T Consensus       305 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~------G------  372 (396)
T TIGR00882       305 TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSI------G------  372 (396)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhc------c------
Confidence            2455666777888888877777777888888899998887665 56788999999999988876532      1      


Q ss_pred             cCchhHHHHHHHHHHHHHHHHH
Q 011513          431 NKGRLDYFYYLVAALGLLNFGF  452 (484)
Q Consensus       431 n~~~~~~~f~~la~l~~~~~i~  452 (484)
                          +...|.+.+++.++..++
T Consensus       373 ----~~~~f~~~~~~~~i~~~~  390 (396)
T TIGR00882       373 ----FQGAYLVLGCIVLLFTLI  390 (396)
T ss_pred             ----cHHHHHHHHHHHHHHHHH
Confidence                345666666666555543

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.90  E-value=1.8e-07  Score=97.27  Aligned_cols=269  Identities=12%  Similarity=0.119  Sum_probs=160.1

Q ss_pred             hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeee----ec---ccc
Q 011513           33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQ----SD---VSW  105 (484)
Q Consensus        33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~----~~---~g~  105 (484)
                      ....+++...+..++...+.-+..+++.|..++.+  +   |.+..++...+.++|.++...+.+.+.    +.   .+|
T Consensus       102 ~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~--~---R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~  176 (428)
T PF13347_consen  102 KLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPD--E---RTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGY  176 (428)
T ss_pred             HHHHHHHHHHHHHHhhhhccCchhhcCccccccHh--h---hhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHH
Confidence            44455777778899999999999999999988643  2   345677777778888865555554433    22   168


Q ss_pred             cccchhhhHHHHHHHHHHHhccceeeecCCCCCchhhHHHHHHHHHHhccccCCCCCccccccCCCccccCCCCCCCCcc
Q 011513          106 AWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQF  185 (484)
Q Consensus       106 ~~~F~i~~~~~~l~~i~~l~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (484)
                      ++.+.+.+++.++..++..+..|+-.++.++..+               +.                             
T Consensus       177 ~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~---------------~~-----------------------------  212 (428)
T PF13347_consen  177 RWMALVLAIVGLVFFLITFFFVKERSVEVTEQEK---------------KI-----------------------------  212 (428)
T ss_pred             HHHHHHHHHHHHHHhhhhhheeeecccccccccc---------------cc-----------------------------
Confidence            8777777777777666655544430000000000               00                             


Q ss_pred             cccccccccCCccccccCCCCCCCcccCcchhHHHHHHhHhhHHHHHHHHHHHHHHhchhhHHHHHHH-hcCCCCCCccc
Q 011513          186 RCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQAL-QSDRRVGNTHF  264 (484)
Q Consensus       186 ~~l~~a~i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~~-~~~~~~g~~g~  264 (484)
                      ++.+..+.               .        .++ |.   +..+++.....+....-..+...+... .+... +    
T Consensus       213 ~~~~~~~~---------------~--------~~n-r~---~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~----  260 (428)
T PF13347_consen  213 SLRDSLRS---------------L--------FRN-RP---FRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-G----  260 (428)
T ss_pred             ccccchhh---------------h--------ccc-ch---HHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-h----
Confidence            00000000               0        000 11   122333333334433333332222221 12111 0    


Q ss_pred             cccccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccc
Q 011513          265 KIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQ  344 (484)
Q Consensus       265 ~i~~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~  344 (484)
                       . .+.+..+..+..++..|+..++    .+|+++       .+-+.+|.++.+++++...+...               
T Consensus       261 -~-~~~~~~~~~~~~~v~~~~~~~l----~~r~gk-------~~~~~~~~~~~~~~~~~~~~~~~---------------  312 (428)
T PF13347_consen  261 -L-ISIFMLIFFVASIVGSPLWGRL----SKRFGK-------KKVYIIGLLLAALGFLLLFFLGP---------------  312 (428)
T ss_pred             -h-hHHHHHHHHHHHHHHHHHHHHH----HHHccc-------eeehhhhHHHHHHHHHHHHHHHh---------------
Confidence             1 2333344455556666665553    455433       23466788888888887766531               


Q ss_pred             cCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCc-------hhhhhHHhhHHHHHHHHHHHHHHHhHhhcccc
Q 011513          345 RRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPE-------NMRSIGGSLAFVGFAISNYLNGFLISMVHRFT  417 (484)
Q Consensus       345 ~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~-------~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~  417 (484)
                             .+.+++.+..++.+++-........++..+..+.       +..|.++|++.+...+|..+++.+.+.+-...
T Consensus       313 -------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~  385 (428)
T PF13347_consen  313 -------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALV  385 (428)
T ss_pred             -------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHh
Confidence                   3567778888999999999989999999998874       55799999999999999999999888776544

>TIGR00891 2A0112 putative sialic acid transporter

Probab=98.89  E-value=8.1e-08  Score=98.17  Aligned_cols=82  Identities=12%  Similarity=0.137  Sum_probs=67.4

Q ss_pred             hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeeccc--ccccch
Q 011513           33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVS--WAWGLG  110 (484)
Q Consensus        33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g--~~~~F~  110 (484)
                      +...+++++++.++|.|...|...+++.|.+++++      +..+.+++..+.++|..+++.+++.+.+..+  |++.|.
T Consensus        99 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~  172 (405)
T TIGR00891        99 GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL------RNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFF  172 (405)
T ss_pred             cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHH
Confidence            46678889999999999999999999999998632      3568889999999999999999988877666  999998


Q ss_pred             hhhHHHHHHH
Q 011513          111 IPAFMMFLSC  120 (484)
Q Consensus       111 i~~~~~~l~~  120 (484)
                      +.++..++..
T Consensus       173 ~~~~~~~~~~  182 (405)
T TIGR00891       173 ISILPIIFAL  182 (405)
T ss_pred             HHHHHHHHHH
Confidence            7655544443

>TIGR00897 2A0118 polyol permease family

Probab=98.89  E-value=9.8e-07  Score=90.96  Aligned_cols=76  Identities=9%  Similarity=0.125  Sum_probs=58.1

Q ss_pred             hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHH-HHHhhhheeeeecccccccchh
Q 011513           33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAM-MISLTVIVYVQSDVSWAWGLGI  111 (484)
Q Consensus        33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~-~i~~~l~~~l~~~~g~~~~F~i  111 (484)
                      +...+++.+.+.++|.+..-+...+.+.+.+++++      +.++.+++..+.++|. ++++.+++++.+..||+..++.
T Consensus       104 ~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~  177 (402)
T TIGR00897       104 NYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN------LSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWS  177 (402)
T ss_pred             cHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence            45567778888899988887878888888877532      4678888899999996 6899999998888886655554


Q ss_pred             hhH
Q 011513          112 PAF  114 (484)
Q Consensus       112 ~~~  114 (484)
                      ...
T Consensus       178 ~~~  180 (402)
T TIGR00897       178 ALA  180 (402)
T ss_pred             HHH
Confidence            433

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.88  E-value=4.8e-07  Score=94.67  Aligned_cols=333  Identities=7%  Similarity=-0.001  Sum_probs=176.7

Q ss_pred             HHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheee--eec---------
Q 011513           34 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYV--QSD---------  102 (484)
Q Consensus        34 ~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l--~~~---------  102 (484)
                      ...+.+++.+.-++.....+...++++|..++++.+    .+.++.++.+..|+|+++|+.++++.  .+.         
T Consensus       114 i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~----~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~  189 (477)
T TIGR01301       114 IIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARR----TRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEAC  189 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccccccc
Confidence            355666777777788888888999999999975311    24699999999999999999988764  111         


Q ss_pred             ----ccccccchhhhHHHHHHHHHHHhccceeeecCCCCCchhhHHHHHHHHHHhccccCCCCCccccccCCCccccCCC
Q 011513          103 ----VSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSK  178 (484)
Q Consensus       103 ----~g~~~~F~i~~~~~~l~~i~~l~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (484)
                          .+.+..|.+.++.++++.++-++..|++...++++.+             +..           +++..       
T Consensus       190 ~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~-------------~~~-----------~~~~~-------  238 (477)
T TIGR01301       190 GVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFI-------------NSE-----------AAPPS-------  238 (477)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccch-------------hhh-----------ccccc-------
Confidence                1567899999998888887766544443210000000             000           00000       


Q ss_pred             CCCCCcccccccccccCCccccccCCCCCCCcccCcchhHHHH----HHhHhhHHHHHHHHHHHHHHhchhhHHHHHHH-
Q 011513          179 LPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEV----KVLIRVIPIWASAIVYYVALVQQQTYVVFQAL-  253 (484)
Q Consensus       179 ~~~~~~~~~l~~a~i~~~~~~~~~~g~~~~~~~~~~~~~v~~~----k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~~-  253 (484)
                       ++ +...                      .+    .+-.+..    |.+.+++..-.+.-+=|..+-+..|.++-+.- 
T Consensus       239 -~~-~~~~----------------------~~----~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~  290 (477)
T TIGR01301       239 -KH-GEEA----------------------FF----GELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVY  290 (477)
T ss_pred             -cc-chhh----------------------hH----HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHc
Confidence             00 0000                      00    0000111    12222222222222333333334444432220 


Q ss_pred             hcCCCCC---CccccccccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHH-HHHHHHHHHHHHHHHHHHHH
Q 011513          254 QSDRRVG---NTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQR-MAIGMILAIFTMIISGIIED  329 (484)
Q Consensus       254 ~~~~~~g---~~g~~i~~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~k-i~iG~~l~~i~~~~~~~~~~  329 (484)
                      +-+..-.   +.|..+ ..+-..+|.+...+.    ..++.++.++.+       ..++ ..++.++.++|++...++..
T Consensus       291 ~~~~~~~~~y~~gvr~-G~~~l~~~s~~~~i~----s~~l~~l~~~~g-------~~k~~~~~s~~~~~~~l~~~~~i~~  358 (477)
T TIGR01301       291 GGSVNQGAKYDDGVRA-GAFGLMLNSVVLGIT----SIGMEKLCRGWG-------AGKRLWGIVNIILAICLAATVLVTY  358 (477)
T ss_pred             CCCCcchhHHHHHHHH-HHHHHHHHHHHHHHH----HHHHHHHHHHhc-------cchhHHHHHHHHHHHHHHHHHHHHh
Confidence            0010000   001110 123334444443333    333322344432       1233 36888899999988877653


Q ss_pred             HhhhhhccCCCcccccCCCCccch-HHHHHHHHHHHHhHHHHHHhHHHHHhhcccCc--hhhhhHHhhHHHHHHHHHHHH
Q 011513          330 KRRSLALSRPVGLEQRRGAISSLS-GLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPE--NMRSIGGSLAFVGFAISNYLN  406 (484)
Q Consensus       330 ~~~~~~~~~g~~~~~~~~~~~~~s-~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~--~~~g~~~gl~~l~~~iG~~lg  406 (484)
                      ...+....++.   +.. -..+.. .+..+..+.+.|++-......=++++.+..|+  +..|.+||+.+.+..+.+.+.
T Consensus       359 ~~~~~~~~~~~---~~~-~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~  434 (477)
T TIGR01301       359 VAKNSRYYDGD---GES-LPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIV  434 (477)
T ss_pred             hhhcccccccc---ccc-cCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHH
Confidence            10000000000   000 001112 24556677888999988888889999999995  456999999999999999999


Q ss_pred             HHHhHhhcccccCCCCCCCCCcCccCchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 011513          407 GFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKW  459 (484)
Q Consensus       407 ~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~i~~~~~~~~  459 (484)
                      .+..+.+....+         +     +....+.+-++.++++.+.-.+.-+|
T Consensus       435 sl~~g~~~~~~g---------~-----~~~~~~~~~gv~~~~aa~~~~~~~~~  473 (477)
T TIGR01301       435 SLGSGPWDQLFG---------G-----GNLPAFVVGAVAAFVSGLLALILLPR  473 (477)
T ss_pred             HHHHHHHHHHcC---------C-----CCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence            887777543321         0     11335555555666666555554444

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=98.87  E-value=5.9e-07  Score=98.89  Aligned_cols=85  Identities=14%  Similarity=0.199  Sum_probs=64.1

Q ss_pred             hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeee-----------
Q 011513           33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQS-----------  101 (484)
Q Consensus        33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~-----------  101 (484)
                      +...+++++++.++|.|+..|...+++++.++.+.      |...+++...+..+|.++++.++.++..           
T Consensus       254 s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~  327 (742)
T TIGR01299       254 GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------RGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSA  327 (742)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccc
Confidence            46788999999999999999999999999998531      3567777778888888888876533322           


Q ss_pred             --cccccccchhhhHHHHHHHHHH
Q 011513          102 --DVSWAWGLGIPAFMMFLSCAMF  123 (484)
Q Consensus       102 --~~g~~~~F~i~~~~~~l~~i~~  123 (484)
                        ..+|++.|++.++..++.++.+
T Consensus       328 ~~~~gWR~l~~i~~lp~ll~ll~~  351 (742)
T TIGR01299       328 YQFHSWRVFVIVCAFPCVFAIGAL  351 (742)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHH
Confidence              2468888888777666555443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK15075 citrate-proton symporter; Provisional

Probab=98.87  E-value=5.5e-07  Score=93.82  Aligned_cols=73  Identities=14%  Similarity=0.139  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheee--------eecccccc
Q 011513           36 FLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYV--------QSDVSWAW  107 (484)
Q Consensus        36 ~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l--------~~~~g~~~  107 (484)
                      .+.+++++.++|.|+.-|+..++++|.+|+++      |.++.+++..+.++|..+++.+++.+        .+++||++
T Consensus       119 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~  192 (434)
T PRK15075        119 LVLLGRLLQGFSAGVELGGVSVYLAEIATPGR------KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRI  192 (434)
T ss_pred             HHHHHHHHhhccccccHHHHHHHHHhhCCccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHH
Confidence            57889999999999999999999999998642      24577777777777777776665554        24689999


Q ss_pred             cchhhhH
Q 011513          108 GLGIPAF  114 (484)
Q Consensus       108 ~F~i~~~  114 (484)
                      .|++..+
T Consensus       193 ~f~~~~~  199 (434)
T PRK15075        193 PFLIGCL  199 (434)
T ss_pred             HHHHHHH
Confidence            9987543

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.82  E-value=4.9e-07  Score=93.63  Aligned_cols=86  Identities=16%  Similarity=0.197  Sum_probs=69.9

Q ss_pred             hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeee------ccccc
Q 011513           33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQS------DVSWA  106 (484)
Q Consensus        33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~------~~g~~  106 (484)
                      +...+++++.+.++|.|+..|...+++.+.+++++      |..+.+++..+.++|.++++.+++++.+      ..||+
T Consensus        95 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr  168 (412)
T TIGR02332        95 GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF------RARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQ  168 (412)
T ss_pred             CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchh
Confidence            45678999999999999999999999999998531      3568888889999999999999888753      46999


Q ss_pred             ccchhhhHHHHHHHHHHH
Q 011513          107 WGLGIPAFMMFLSCAMFF  124 (484)
Q Consensus       107 ~~F~i~~~~~~l~~i~~l  124 (484)
                      +.|.+.++..++..++.+
T Consensus       169 ~~f~~~~~~~l~~~~~~~  186 (412)
T TIGR02332       169 WLFLLEGFPSVILGVMTW  186 (412)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999998777666554443

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK09669 putative symporter YagG; Provisional

Probab=98.80  E-value=2.9e-07  Score=96.26  Aligned_cols=65  Identities=8%  Similarity=0.124  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHhHHHHHHhHHHHHhhcccC-------chhhhhHHhhHHHHHHHHHHHHHHHhHhhccccc
Q 011513          354 GLWLIPQLSLIGFSEAFTIIAEVEFYYKQFP-------ENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTK  418 (484)
Q Consensus       354 ~~~li~~~~l~~igE~l~~p~~~~~~~~~aP-------~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~  418 (484)
                      .+.++...++.++|+....+...+++.+.+|       ++..|.+.|.+.+...+|..+|+.+++.+.+..+
T Consensus       319 ~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~G  390 (444)
T PRK09669        319 VWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVD  390 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            3444556688999999999999999999886       4456788999999999999999999888766553

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.80  E-value=5.7e-07  Score=95.62  Aligned_cols=83  Identities=17%  Similarity=0.155  Sum_probs=65.5

Q ss_pred             hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeee------------
Q 011513           33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQ------------  100 (484)
Q Consensus        33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~------------  100 (484)
                      +...+++++++.++|.|+..|....++.+.+|++.      |.++.++.+.+.++|.++++.++.++.            
T Consensus       114 ~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~------Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~  187 (502)
T TIGR00887       114 VMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW------RGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAAD  187 (502)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence            35789999999999999999999999999999642      356888889999999999887765431            


Q ss_pred             -----------ecccccccchhhhHHHHHHHH
Q 011513          101 -----------SDVSWAWGLGIPAFMMFLSCA  121 (484)
Q Consensus       101 -----------~~~g~~~~F~i~~~~~~l~~i  121 (484)
                                 ...+|++.|.+.++..++..+
T Consensus       188 ~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~  219 (502)
T TIGR00887       188 EASCTGSCVPAVDYMWRILIGFGAVPALLALY  219 (502)
T ss_pred             cccccccccchhcccHHHHHHHHHHHHHHHHH
Confidence                       124799999877766555443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.78  E-value=6.2e-07  Score=94.70  Aligned_cols=85  Identities=6%  Similarity=-0.027  Sum_probs=59.4

Q ss_pred             hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeee----e-----cc
Q 011513           33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQ----S-----DV  103 (484)
Q Consensus        33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~----~-----~~  103 (484)
                      +...+++++++.++|.+..-+ ....+++.++++   +   |..+.++.+...|+|+.+++.+.+.+.    +     ..
T Consensus       123 s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~---~---rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~  195 (476)
T PLN00028        123 SATGFIAVRFFIGFSLATFVS-CQYWMSTMFNGK---I---VGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFT  195 (476)
T ss_pred             CHHHHHHHHHHHHHHHHhhHH-HHHHHHHhcChh---h---eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchh
Confidence            455677888899998887644 456788888753   1   346777777777888888766655432    1     25


Q ss_pred             cccccchhhhHHHHHHHHHHH
Q 011513          104 SWAWGLGIPAFMMFLSCAMFF  124 (484)
Q Consensus       104 g~~~~F~i~~~~~~l~~i~~l  124 (484)
                      ||++.|.+.++..++..+..+
T Consensus       196 gWr~~f~i~g~l~l~~~l~~~  216 (476)
T PLN00028        196 AWRIAFFVPGLLHIIMGILVL  216 (476)
T ss_pred             hhHHHHHHHHHHHHHHHHHHH
Confidence            899999998887766554433

>TIGR00896 CynX cyanate transporter

Probab=98.78  E-value=6.2e-07  Score=90.59  Aligned_cols=80  Identities=18%  Similarity=0.221  Sum_probs=62.5

Q ss_pred             hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecc--cccccch
Q 011513           33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDV--SWAWGLG  110 (484)
Q Consensus        33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~--g~~~~F~  110 (484)
                      +...+++++.+.++|.|...+...+...|.++++       +.++.+++..+.++|..+++.+++++.++.  +|++.|.
T Consensus        86 ~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~  158 (355)
T TIGR00896        86 GTALLFAGTALIGVGIAIINVLLPSLIKRDFPQR-------VGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALA  158 (355)
T ss_pred             cHHHHHHHHHHHHHHHHHHhccchHHHHHhCcch-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence            4557788899999999998888888888887531       356888889999999999999988887654  3888887


Q ss_pred             hhhHHHHHH
Q 011513          111 IPAFMMFLS  119 (484)
Q Consensus       111 i~~~~~~l~  119 (484)
                      +.++..++.
T Consensus       159 ~~~~~~~~~  167 (355)
T TIGR00896       159 WWALPALLA  167 (355)
T ss_pred             HHHHHHHHH
Confidence            766554443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.76  E-value=3.7e-07  Score=96.34  Aligned_cols=118  Identities=13%  Similarity=0.120  Sum_probs=76.4

Q ss_pred             cchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCc
Q 011513          271 YAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAIS  350 (484)
Q Consensus       271 ~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  350 (484)
                      +..++.+..++..|+..++    .+|++       ..+.+.+|+++.+++.+...+.-..                   .
T Consensus       271 ~~~~~~i~~ii~~~~~~~l----~~r~g-------kk~~~~~~~~~~~~~~~~~~~~~~~-------------------~  320 (473)
T PRK10429        271 YLSYAGAANLVTLILFPRL----VKSLS-------RRILWAGASIFPVLSCGVLLLMGLA-------------------A  320 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHH----HHHcC-------cHHHHHHHHHHHHHHHHHHHHHhcc-------------------C
Confidence            3444555566666665553    34432       2344556666655555444332100                   0


Q ss_pred             cchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccC-------chhhhhHHhhHHHHHHHHHHHHHHHhHhhccccc
Q 011513          351 SLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFP-------ENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTK  418 (484)
Q Consensus       351 ~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP-------~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~  418 (484)
                      +.+.++++...++.+++.....+...++..+.+|       ++..|.+.|.+.+..-+|..+|+.+.+.+.+..+
T Consensus       321 ~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~G  395 (473)
T PRK10429        321 PHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIG  395 (473)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            1234445556678899999999999999999988       4556779999999999999999988887765443

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.74  E-value=2.3e-06  Score=87.74  Aligned_cols=80  Identities=8%  Similarity=-0.060  Sum_probs=54.2

Q ss_pred             HHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhhhHHHHH
Q 011513           39 TGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFL  118 (484)
Q Consensus        39 ~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~~~~~~l  118 (484)
                      ....+.++..+...+...++..+..++      +.+..+-....++..+|.++|+.+.+++.+++||+..|++.++..++
T Consensus       102 ~~~~~~~~~~a~~d~~~d~~~~~~~~~------~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~  175 (390)
T TIGR02718       102 GLLACASLASATQDIATDGMAAEHFNG------RTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLA  175 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCH------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence            334444555566666666665554432      11233455566777999999998888998889999999999888777


Q ss_pred             HHHHHH
Q 011513          119 SCAMFF  124 (484)
Q Consensus       119 ~~i~~l  124 (484)
                      ..+..+
T Consensus       176 ~~~~~~  181 (390)
T TIGR02718       176 SLVCVL  181 (390)
T ss_pred             HHHHHH
Confidence            665543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR01272 gluP glucose/galactose transporter

Probab=98.69  E-value=3e-06  Score=84.35  Aligned_cols=87  Identities=7%  Similarity=-0.117  Sum_probs=68.9

Q ss_pred             chhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeec--------
Q 011513           31 PWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSD--------  102 (484)
Q Consensus        31 ~~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~--------  102 (484)
                      ..+...+.+++++++.|.+...+..++++++.-++++      +.+..++.-.+..+|+++||++++.+..+        
T Consensus         7 ~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~   80 (310)
T TIGR01272         7 QRYYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQ   80 (310)
T ss_pred             hhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhh
Confidence            3568899999999999999999999999999987532      35678888899999999999999876521        


Q ss_pred             --------ccccccchhhhHHHHHHHHHH
Q 011513          103 --------VSWAWGLGIPAFMMFLSCAMF  123 (484)
Q Consensus       103 --------~g~~~~F~i~~~~~~l~~i~~  123 (484)
                              .+|++.|++-+...++..+++
T Consensus        81 ~~~~~~~~~~~~~~yl~ia~~~~~~~i~~  109 (310)
T TIGR01272        81 VATANAEAAKVHTPYLLLAGALAVLAIIF  109 (310)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    468899985555544444433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.55  E-value=3.6e-05  Score=77.62  Aligned_cols=276  Identities=14%  Similarity=0.157  Sum_probs=157.1

Q ss_pred             CCCCchhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeeccccc
Q 011513           27 PGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWA  106 (484)
Q Consensus        27 ~~~~~~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~  106 (484)
                      ..+.........++..++++|.+.......++.+|..++++      |.+.-++.|...-+|..++.++.+.+-+.++..
T Consensus        82 ~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~  155 (403)
T PF03209_consen   82 SGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPE  155 (403)
T ss_pred             ccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHHHHHccccCHH
Confidence            34455566677778888899999999999999999998743      356888889999999999999988777766643


Q ss_pred             ccch----hhhHHHHHHHHHHHhccceeeecCCCCCchhhHHHHHHHHHHhccccCCCCCccccccCCCccccCCCCCCC
Q 011513          107 WGLG----IPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHT  182 (484)
Q Consensus       107 ~~F~----i~~~~~~l~~i~~l~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (484)
                      -..-    .+.+.+++.++-.+ +  .    +++.+..              . +.++++                    
T Consensus       156 rL~~v~~~~a~i~~~l~~ia~w-g--~----E~r~~~~--------------~-~~~~~~--------------------  193 (403)
T PF03209_consen  156 RLIQVIQGVALIALLLNLIALW-G--Q----EPRRSRR--------------A-AAAERP--------------------  193 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-h--c----ccCCccc--------------c-cCCCCC--------------------
Confidence            2222    22222222221111 1  1    1110000              0 000000                    


Q ss_pred             CcccccccccccCCccccccCCCCCCCcccCcchhHHHHHHhHhhHHHHHHHHHHHHHHhchhhHHHHHHHhcCCCCCCc
Q 011513          183 GQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNT  262 (484)
Q Consensus       183 ~~~~~l~~a~i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~~~~~~~~g~~  262 (484)
                       ...+.+.                   |+...  ...+.++++  .-+++..+.           +..|+.-++...| .
T Consensus       194 -~~~f~~a-------------------~~~~~--~~~~a~~f~--~fl~l~t~a-----------~~~QD~iLEPygg-~  237 (403)
T PF03209_consen  194 -RPPFREA-------------------WRQVW--ASPQARRFF--VFLFLGTLA-----------FFMQDVILEPYGG-E  237 (403)
T ss_pred             -CccHHHH-------------------HHHHH--hCCChhHHH--HHHHHHHHH-----------HHhhHHHcCCchh-H
Confidence             0000000                   00000  001112221  111111221           2234433443322 1


Q ss_pred             cccccccc---cchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCC
Q 011513          263 HFKIPAAS---YAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRP  339 (484)
Q Consensus       263 g~~i~~~~---~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g  339 (484)
                      -|.++++.   ++.+-....++...+.++...   ++       ..+.+--.+|....++++....+...          
T Consensus       238 Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~---~~-------~~~~~~a~~G~~~~~~~f~lii~a~~----------  297 (403)
T PF03209_consen  238 VFGMSVGETTRLTAFWGGGTLLGMLLAGFLLS---RR-------LGKKRTAALGCLLGALAFALIILAGP----------  297 (403)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc---CC-------CCchHHHHHHHHHHHHHHHHHHHHHh----------
Confidence            12244433   333333445555555555421   22       12222334677777777766554422          


Q ss_pred             CcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccc
Q 011513          340 VGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFT  417 (484)
Q Consensus       340 ~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~  417 (484)
                                 .-+.+.+.+..+++|+|-.+.....++...+.++++..|+.+|+|...++++.-++..+++.+.|..
T Consensus       298 -----------~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~  364 (403)
T PF03209_consen  298 -----------LGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLV  364 (403)
T ss_pred             -----------cccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       1235566788899999999999999999999999999999999999999999999888888877654

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.54  E-value=3.3e-06  Score=84.11  Aligned_cols=88  Identities=17%  Similarity=0.146  Sum_probs=78.9

Q ss_pred             hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhh
Q 011513           33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP  112 (484)
Q Consensus        33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~  112 (484)
                      +.+.+++++.+.++|.++...+-.++++|.|+++..     |.++..+---.+.+|.++||..+|.+.+-.|+++.|++.
T Consensus       158 sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~e-----r~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL  232 (464)
T KOG3764|consen  158 SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNE-----RGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVL  232 (464)
T ss_pred             hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchh-----hhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHH
Confidence            566899999999999999999999999999998642     367888888999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHh
Q 011513          113 AFMMFLSCAMFFL  125 (484)
Q Consensus       113 ~~~~~l~~i~~l~  125 (484)
                      ++++++...+-++
T Consensus       233 ~~v~Lld~~L~l~  245 (464)
T KOG3764|consen  233 AIVLLLDGALQLL  245 (464)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999988776544

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.51  E-value=1.8e-05  Score=86.47  Aligned_cols=87  Identities=16%  Similarity=0.172  Sum_probs=71.9

Q ss_pred             hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecc---------
Q 011513           33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDV---------  103 (484)
Q Consensus        33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~---------  103 (484)
                      ....+++++++.|+|.+...|...+++.|.+++++      +..++++++.+.++|.++|+++++++.+.+         
T Consensus       171 ~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~  244 (633)
T TIGR00805       171 MWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTE  244 (633)
T ss_pred             eehhhHHHHHHHhccCCcchhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCC
Confidence            46678899999999999999999999999998642      357899999999999999999998876533         


Q ss_pred             -------------cccccchhhhHHHHHHHHHHHh
Q 011513          104 -------------SWAWGLGIPAFMMFLSCAMFFL  125 (484)
Q Consensus       104 -------------g~~~~F~i~~~~~~l~~i~~l~  125 (484)
                                   +|+.+|++.++..++..+.+++
T Consensus       245 ~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~  279 (633)
T TIGR00805       245 DVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFF  279 (633)
T ss_pred             CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                         2788899888877776655443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK10133 L-fucose transporter; Provisional

Probab=98.47  E-value=1.6e-05  Score=82.96  Aligned_cols=62  Identities=13%  Similarity=0.089  Sum_probs=47.3

Q ss_pred             hhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheee
Q 011513           32 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYV   99 (484)
Q Consensus        32 ~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l   99 (484)
                      .+...+++++++.++|.|...+..++++.|..+++   +   +....+.+.....+|..+|+.+++.+
T Consensus       115 ~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~---~---~~~~~s~~~~~~~~G~~~g~~~g~~l  176 (438)
T PRK10133        115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPES---S---GHFRLNLAQTFNSFGAIIAVVFGQSL  176 (438)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChh---h---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678999999999999999999999999864432   1   12346666788888888888876543

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.46  E-value=3.7e-06  Score=91.45  Aligned_cols=254  Identities=7%  Similarity=-0.106  Sum_probs=178.5

Q ss_pred             hhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeeccc-cccc--
Q 011513           32 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVS-WAWG--  108 (484)
Q Consensus        32 ~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g-~~~~--  108 (484)
                      .+.....+++..++++.++.+++.+++.+++.++-   +++++++.+++|||..+.+.+.+ +++..+..... +...  
T Consensus        80 ~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf---~~~~~~~~~s~F~~fY~~iNiGS-lis~~i~~~l~~~~~~fg  155 (654)
T TIGR00926        80 GHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQF---EERQLSLRSRFFSFFYFAINAGS-LISTIITPILRGDVGCFG  155 (654)
T ss_pred             ccchHHHHHHHHHHHHHhhccccccCchhhhHhhc---CccchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcccc
Confidence            34666778999999999999999999999999763   36667789999999999999865 55555544332 3322  


Q ss_pred             -----chhhhHHHHHHHHHHHhccceeeecCCCCCchhhHHHHHHHHHHhccccCCCCCccccccCCCccccCCCCCCCC
Q 011513          109 -----LGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTG  183 (484)
Q Consensus       109 -----F~i~~~~~~l~~i~~l~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (484)
                           ++..++.+++.++.++.+...++..++.+.+...+.+++.......+.+                          
T Consensus       156 ~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~--------------------------  209 (654)
T TIGR00926       156 CQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKR--------------------------  209 (654)
T ss_pred             cCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHh--------------------------
Confidence                 3367777777777788877777666665554444555544333221100                          


Q ss_pred             cccccccccccCCccccccCCCCCCCcc--cCcchhHHHHHHhHhhHHHHHHHHHHHHHHhchhhHHHHHHHhcCCCCCC
Q 011513          184 QFRCLDKAAIMTPEDQIKSDGSAINPWR--LSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGN  261 (484)
Q Consensus       184 ~~~~l~~a~i~~~~~~~~~~g~~~~~~~--~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~~~~~~~~g~  261 (484)
                         +...            .......|-  ......+++++...+++.++...+.+++.+.|.......|..++++..+ 
T Consensus       210 ---~~~~------------~~~~~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~-  273 (654)
T TIGR00926       210 ---FSTR------------SEHWPLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDG-  273 (654)
T ss_pred             ---hccC------------CcccchhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcC-
Confidence               0000            000000111  1122234678888899999999999999999988888888888988754 


Q ss_pred             ccccccccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011513          262 THFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLA  335 (484)
Q Consensus       262 ~g~~i~~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~  335 (484)
                       .+...+...+.++.+-.++..++...+.+|+++++.   +...+++++.-+.+.++++.+.+++++....+..
T Consensus       274 -~l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~---~~~~~ls~l~k~~iG~~la~la~~va~~ve~~~~  343 (654)
T TIGR00926       274 -DVGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIA---KCGTRFTSLRKMAVGGLLAALSFFVAALVQLKVN  343 (654)
T ss_pred             -ccCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHH---hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             333334467899999999999999999899999862   3335678899999999999999999888665543

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.38  E-value=6.6e-07  Score=90.68  Aligned_cols=140  Identities=16%  Similarity=0.220  Sum_probs=106.1

Q ss_pred             cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513          269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA  348 (484)
Q Consensus       269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  348 (484)
                      +.++.+-.+.-+++.|+.+.+    -.|       .+...-|++|.++-+++.+..++...                   
T Consensus        71 Gll~~vf~v~~~i~sPl~gyL----adr-------yNR~~v~~vG~~iW~~Av~~~~fs~~-------------------  120 (493)
T KOG1330|consen   71 GLLQTVFIVVFMIASPLFGYL----ADR-------YNRKRVIAVGIFIWTLAVFASGFSNH-------------------  120 (493)
T ss_pred             cchhHHHHHHHHHHHHHHHHH----Hhh-------cCcceEEeeHHHHHHHHHHHHHHHHH-------------------
Confidence            455666566667778887774    233       33445588899888888887766532                   


Q ss_pred             CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCc
Q 011513          349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPE  428 (484)
Q Consensus       349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~  428 (484)
                           .|.+++...+.|+||...+|...+++.+..|...||+++|++++...+|+.+|...++.+...+.     .|   
T Consensus       121 -----Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~-----~W---  187 (493)
T KOG1330|consen  121 -----FWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF-----WW---  187 (493)
T ss_pred             -----HHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc-----ce---
Confidence                 34455677999999999999999999999999999999999999999999999888877765542     24   


Q ss_pred             CccCchhHHHHHHHHHHHHHHHHHHHHhhh
Q 011513          429 DLNKGRLDYFYYLVAALGLLNFGFFLLCAK  458 (484)
Q Consensus       429 ~ln~~~~~~~f~~la~l~~~~~i~~~~~~~  458 (484)
                             .+-|.+.++++++.+++..++.+
T Consensus       188 -------r~af~~~avl~vi~~~L~~~f~~  210 (493)
T KOG1330|consen  188 -------RWAFRGSAVLGVIVGLLVFLFVR  210 (493)
T ss_pred             -------EEEEEeehHHHHHHHHHHHhhcc
Confidence                   34567788888877766555543

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.36  E-value=0.00016  Score=76.05  Aligned_cols=88  Identities=13%  Similarity=0.130  Sum_probs=74.4

Q ss_pred             hhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeee------ecccc
Q 011513           32 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQ------SDVSW  105 (484)
Q Consensus        32 ~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~------~~~g~  105 (484)
                      .+.+.+.+.++++|+.+++.-|+....++.+|.+++      +..-+.++|.+.++|..+|.++...++      ...||
T Consensus       132 ~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW  205 (495)
T KOG2533|consen  132 HSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGW  205 (495)
T ss_pred             hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCc
Confidence            467788899999999999999999999999998642      356788999999999999999987752      34899


Q ss_pred             cccchhhhHHHHHHHHHHHh
Q 011513          106 AWGLGIPAFMMFLSCAMFFL  125 (484)
Q Consensus       106 ~~~F~i~~~~~~l~~i~~l~  125 (484)
                      +|.|++.++++++..++.++
T Consensus       206 ~~~FiI~G~i~~~~gi~~f~  225 (495)
T KOG2533|consen  206 RWLFIIEGVITLVLGIVVFF  225 (495)
T ss_pred             eeehhHHHHHHHHHHheEEE
Confidence            99999999988887765443

>PRK03545 putative arabinose transporter; Provisional

Probab=98.31  E-value=3.8e-05  Score=78.70  Aligned_cols=134  Identities=12%  Similarity=0.078  Sum_probs=96.4

Q ss_pred             cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513          269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA  348 (484)
Q Consensus       269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  348 (484)
                      ++..+...+...+..++.+.+    .+|+       +..+-+.+++++.+++.+..++.                     
T Consensus        47 g~~~~~~~~~~~~~~~~~g~l----~dr~-------g~r~~~~~~~~~~~~~~~~~~~~---------------------   94 (390)
T PRK03545         47 GLMLTIYAWVVALMSLPLMLL----TSNV-------ERRKLLIGLFVLFIASHVLSALA---------------------   94 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HcCC-------ChHHHHHHHHHHHHHHHHHHHHh---------------------
Confidence            455566666666666666553    3443       33355777888888887776554                     


Q ss_pred             CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCc
Q 011513          349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPE  428 (484)
Q Consensus       349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~  428 (484)
                         .+.+++....++.|+++....|....++.+..|++.|+..+|++....++|..+++.+++.+.+..      +|   
T Consensus        95 ---~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~------gw---  162 (390)
T PRK03545         95 ---WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYL------GW---  162 (390)
T ss_pred             ---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHh------cH---
Confidence               235566677789999999999999999999999999999999999999999999999987764321      23   


Q ss_pred             CccCchhHHHHHHHHHHHHHHHHHH
Q 011513          429 DLNKGRLDYFYYLVAALGLLNFGFF  453 (484)
Q Consensus       429 ~ln~~~~~~~f~~la~l~~~~~i~~  453 (484)
                             ...|++.++++++..+..
T Consensus       163 -------~~~f~~~~~~~~l~~~~~  180 (390)
T PRK03545        163 -------RTTFLAIGGGALITLLLL  180 (390)
T ss_pred             -------HHHHHHHHHHHHHHHHHH
Confidence                   346666666665554433

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.26  E-value=3.5e-05  Score=76.98  Aligned_cols=133  Identities=17%  Similarity=0.268  Sum_probs=99.2

Q ss_pred             cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513          269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA  348 (484)
Q Consensus       269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  348 (484)
                      +++.+...+...+..|+.+.+.    +|+       +..+-+.+|.++.+++.+...+.                     
T Consensus        35 ~~~~~~~~~~~~~~~~~~g~l~----dr~-------g~r~~l~~~~~~~~~~~~~~~~~---------------------   82 (352)
T PF07690_consen   35 GLLFSAFFLGSALFSPFAGYLS----DRF-------GRRRVLIIGLLLFALGSLLLAFA---------------------   82 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH----HHS--------HHHHHHHHHHHHHHHHHHHHHH---------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----HHc-------CCeeeEeehhhhhhhHHHHhhhh---------------------
Confidence            5666777777788888877763    443       22344677888888874444432                     


Q ss_pred             CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCc
Q 011513          349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPE  428 (484)
Q Consensus       349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~  428 (484)
                         .+.++++...++.|+++....+....++.+..|++.|+..+|++....++|..+++.+++.+.+..      +|   
T Consensus        83 ---~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~------~~---  150 (352)
T PF07690_consen   83 ---SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYF------GW---  150 (352)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHC------HH---
T ss_pred             ---hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcc------cc---
Confidence               123366778899999999999999999999999999999999999999999999999998875321      12   


Q ss_pred             CccCchhHHHHHHHHHHHHHHHHH
Q 011513          429 DLNKGRLDYFYYLVAALGLLNFGF  452 (484)
Q Consensus       429 ~ln~~~~~~~f~~la~l~~~~~i~  452 (484)
                             ...|++.+++.++..++
T Consensus       151 -------~~~~~~~~~~~~~~~il  167 (352)
T PF07690_consen  151 -------RWAFLISAILSLIAAIL  167 (352)
T ss_dssp             -------CCHHHHHHHHHHHHHHH
T ss_pred             -------ccccccccchhhhhhhh
Confidence                   23567777777777664

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.25  E-value=5.1e-05  Score=76.87  Aligned_cols=139  Identities=19%  Similarity=0.235  Sum_probs=110.6

Q ss_pred             ccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHH-HHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccC
Q 011513          268 AASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQR-MAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRR  346 (484)
Q Consensus       268 ~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~k-i~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~  346 (484)
                      .+++.+...+.+.+..|+...+    .+|+.        .|| +...+.+.++|-+..++.                   
T Consensus        50 aG~lis~yAl~~ai~ap~l~~l----t~r~~--------Rr~lLl~~l~lFi~~n~l~alA-------------------   98 (394)
T COG2814          50 AGQLITAYALGVALGAPLLALL----TGRLE--------RRRLLLGLLALFIVSNLLSALA-------------------   98 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----Hcccc--------hHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence            4688888899999999987774    33321        233 444556677777776664                   


Q ss_pred             CCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCC
Q 011513          347 GAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWL  426 (484)
Q Consensus       347 ~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~  426 (484)
                           -|.+.+....++.+++-....+...+.+.+++|++.|+..+|+.+....++..+|.-++.++.+.-      +| 
T Consensus        99 -----p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~------GW-  166 (394)
T COG2814          99 -----PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF------GW-  166 (394)
T ss_pred             -----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHh------hH-
Confidence                 346678889999999999999999999999999999999999999999999999988888876543      46 


Q ss_pred             CcCccCchhHHHHHHHHHHHHHHHHHHHHhhh
Q 011513          427 PEDLNKGRLDYFYYLVAALGLLNFGFFLLCAK  458 (484)
Q Consensus       427 ~~~ln~~~~~~~f~~la~l~~~~~i~~~~~~~  458 (484)
                               ..-|+.+++++++..+..+...+
T Consensus       167 ---------R~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         167 ---------RATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             ---------HHHHHHHHHHHHHHHHHHHHhCC
Confidence                     45788888888888877777766

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.24  E-value=8.6e-05  Score=76.88  Aligned_cols=85  Identities=14%  Similarity=0.051  Sum_probs=65.2

Q ss_pred             hhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeee----------
Q 011513           32 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQS----------  101 (484)
Q Consensus        32 ~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~----------  101 (484)
                      .+...+.+++++.++|.|...+..++++.+..++++      +.+..++.....++|..+|+.+++.+..          
T Consensus        92 ~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~  165 (410)
T TIGR00885        92 MNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDV  165 (410)
T ss_pred             ccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhh
Confidence            356788999999999999999999999988876532      2456778888999999999998876632          


Q ss_pred             ----------------cccccccchhhhHHHHHHHHH
Q 011513          102 ----------------DVSWAWGLGIPAFMMFLSCAM  122 (484)
Q Consensus       102 ----------------~~g~~~~F~i~~~~~~l~~i~  122 (484)
                                      ..+|++.|++.++..++..++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~  202 (410)
T TIGR00885       166 LDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALL  202 (410)
T ss_pred             hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            246999998777755554433

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.24  E-value=6.8e-05  Score=76.11  Aligned_cols=137  Identities=10%  Similarity=0.124  Sum_probs=97.9

Q ss_pred             cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513          269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA  348 (484)
Q Consensus       269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  348 (484)
                      +++.+...+..++..++.+++    .+|++       ..+-+.+|.++.+++.+.....                     
T Consensus        43 g~~~~~~~~~~~~~~~~~g~l----~d~~g-------~r~~~~~~~~~~~~~~~~~~~~---------------------   90 (385)
T TIGR00710        43 QMTLTLYLLGFAAGQLLWGPL----SDRYG-------RRPVLLLGLFIFALSSLGLALS---------------------   90 (385)
T ss_pred             HHHHHHHHHHHHHHHHhhhhH----HHhcC-------ChHHHHHHHHHHHHHHHHHHHH---------------------
Confidence            566667777777777777765    34432       2234667777777777665543                     


Q ss_pred             CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCc
Q 011513          349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPE  428 (484)
Q Consensus       349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~  428 (484)
                         .+.++++...++.++++....+...+++.+..|++.|+..+|++.....+|..+++.+++.+.+..      +|   
T Consensus        91 ---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~------~~---  158 (385)
T TIGR00710        91 ---NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWL------SW---  158 (385)
T ss_pred             ---ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CH---
Confidence               234566677899999999999999999999999999999999999999999999999988765321      23   


Q ss_pred             CccCchhHHHHHHHHHHHHHHHHHHHHh
Q 011513          429 DLNKGRLDYFYYLVAALGLLNFGFFLLC  456 (484)
Q Consensus       429 ~ln~~~~~~~f~~la~l~~~~~i~~~~~  456 (484)
                             ...|++.+++.++..+.....
T Consensus       159 -------~~~~~~~~~~~~~~~~~~~~~  179 (385)
T TIGR00710       159 -------HAIFAFLSLAGILLSALIFFI  179 (385)
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHh
Confidence                   345555566655555544433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK11462 putative transporter; Provisional

Probab=98.23  E-value=0.00012  Score=76.99  Aligned_cols=86  Identities=15%  Similarity=0.202  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeec-------cccc
Q 011513           34 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSD-------VSWA  106 (484)
Q Consensus        34 ~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~-------~g~~  106 (484)
                      ...+++...+..++..++.-...++.++..++.  +|   |.+..++...+.++|.++++.+...+...       .+|.
T Consensus       109 ~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~--~e---Rt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~  183 (460)
T PRK11462        109 MIYAAITYTLLTLLYTVVNIPYCALGGVITNDP--TQ---RISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQ  183 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCH--HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHH
Confidence            334455555667777777778889999887753  23   46788888899999988876664332221       3566


Q ss_pred             ccchhhhHHHHHHHHHHH
Q 011513          107 WGLGIPAFMMFLSCAMFF  124 (484)
Q Consensus       107 ~~F~i~~~~~~l~~i~~l  124 (484)
                      ....+.++..++...+.+
T Consensus       184 ~~~~i~~ii~~i~~~i~~  201 (460)
T PRK11462        184 GGIAVLSVVAFMMLAFCF  201 (460)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            555555555444444433

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.22  E-value=9.5e-05  Score=76.56  Aligned_cols=142  Identities=13%  Similarity=0.068  Sum_probs=99.1

Q ss_pred             cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513          269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA  348 (484)
Q Consensus       269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  348 (484)
                      ++..+...+...+.+++.+++    .+|++       ..+-+.+++++.+++.+..++.                     
T Consensus        46 g~~~s~~~~~~~~~~~~~g~l----~dr~G-------~r~~~~~~~~~~~~~~~~~~~~---------------------   93 (412)
T TIGR02332        46 GLAATLFYAAYVICGIPSNIM----LAIIG-------ARRWIAGIMVLWGIASTATMFA---------------------   93 (412)
T ss_pred             HHHHHHHHHHHHHHHhhHHHH----HHHhC-------hHHHHHHHHHHHHHHHHHHHHh---------------------
Confidence            455566666667777776664    34543       2234667788888777776653                     


Q ss_pred             CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCc
Q 011513          349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPE  428 (484)
Q Consensus       349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~  428 (484)
                         .+.+++....++.|++|....|....++.+..|++.||..+|++....++|..+++.+++.+.+.....+..+|   
T Consensus        94 ---~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gw---  167 (412)
T TIGR02332        94 ---TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGW---  167 (412)
T ss_pred             ---cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccch---
Confidence               23556777889999999999999999999999999999999999999999999999998776431100011234   


Q ss_pred             CccCchhHHHHHHHHHHHHHHHHHHHH
Q 011513          429 DLNKGRLDYFYYLVAALGLLNFGFFLL  455 (484)
Q Consensus       429 ~ln~~~~~~~f~~la~l~~~~~i~~~~  455 (484)
                             ...|.+.++.+++..++..+
T Consensus       168 -------r~~f~~~~~~~l~~~~~~~~  187 (412)
T TIGR02332       168 -------QWLFLLEGFPSVILGVMTWF  187 (412)
T ss_pred             -------hHHHHHHHHHHHHHHHHHhh
Confidence                   35666666666555444433

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.20  E-value=1.7e-05  Score=80.05  Aligned_cols=81  Identities=12%  Similarity=0.160  Sum_probs=57.3

Q ss_pred             hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeee----------c
Q 011513           33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQS----------D  102 (484)
Q Consensus        33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~----------~  102 (484)
                      +...+++++.+.+++.+.+ +...++++|.+++++      |..+.+++..+.++|..+++.+++.+..          +
T Consensus        90 ~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~  162 (366)
T TIGR00886        90 SYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKI------QGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAH  162 (366)
T ss_pred             hHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhh------hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Confidence            5677888999999997765 556788999987532      3567788887888888888777655543          3


Q ss_pred             ccccccc-hhhhHHHHHHH
Q 011513          103 VSWAWGL-GIPAFMMFLSC  120 (484)
Q Consensus       103 ~g~~~~F-~i~~~~~~l~~  120 (484)
                      .+|++.| .+.++...+..
T Consensus       163 ~~w~~~~~~~~~~~~~~~~  181 (366)
T TIGR00886       163 LAWGWAFVIVPAGILLLPA  181 (366)
T ss_pred             ccccchhHHHHHHHHHHHH
Confidence            4899999 44444444333

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=98.19  E-value=0.00012  Score=75.20  Aligned_cols=112  Identities=13%  Similarity=0.079  Sum_probs=84.1

Q ss_pred             ccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCC
Q 011513          268 AASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRG  347 (484)
Q Consensus       268 ~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~  347 (484)
                      .+++.+...+..++..++.+++    .+|+++       .+-+.++.++.+++.+...+.                    
T Consensus        52 ~g~~~~~~~~~~~~~~~~~g~l----~dr~g~-------r~~~~~~~~~~~~~~~~~~~~--------------------  100 (406)
T PRK11551         52 MGWAFSAGILGLLPGALLGGRL----ADRIGR-------KRILIVSVALFGLFSLATAQA--------------------  100 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----HHHhCC-------chhHHHHHHHHHHHHHHHHHh--------------------
Confidence            3566677777777777877775    344432       233566666666665554432                    


Q ss_pred             CCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513          348 AISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH  414 (484)
Q Consensus       348 ~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~  414 (484)
                          .+.++++...++.|++.....+...+.+.+..|++.|+..+|+++....+|..+++.++....
T Consensus       101 ----~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~  163 (406)
T PRK11551        101 ----WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAA  163 (406)
T ss_pred             ----ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence                245566777899999999999999999999999999999999999999999999988876654

>TIGR00893 2A0114 d-galactonate transporter

Probab=98.16  E-value=6e-05  Score=76.09  Aligned_cols=137  Identities=13%  Similarity=0.108  Sum_probs=99.8

Q ss_pred             cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513          269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA  348 (484)
Q Consensus       269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  348 (484)
                      +++.+...+..++..|+.+++.    +|+++|       +-+.++.++.+++....++.                     
T Consensus        32 ~~~~~~~~~~~~~~~~~~g~l~----d~~g~r-------~~~~~~~~~~~~~~~~~~~~---------------------   79 (399)
T TIGR00893        32 GYVFSAFSWGYVVGQFPGGWLL----DRFGAR-------KTLAVFIVIWGVFTGLQAFA---------------------   79 (399)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHH----HhcCcc-------eeeHHHHHHHHHHHHHHHHH---------------------
Confidence            5667777888888888877753    444321       22456666666666665543                     


Q ss_pred             CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCc
Q 011513          349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPE  428 (484)
Q Consensus       349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~  428 (484)
                         .+.++++...++.|++.....+....++.+..|++.|+..+|++....++|..+++.+.+.+.+..      +|   
T Consensus        80 ---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------~~---  147 (399)
T TIGR00893        80 ---GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHF------SW---  147 (399)
T ss_pred             ---cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhC------Cc---
Confidence               245567778899999999999999999999999999999999999999999999999988754321      23   


Q ss_pred             CccCchhHHHHHHHHHHHHHHHHHHHHh
Q 011513          429 DLNKGRLDYFYYLVAALGLLNFGFFLLC  456 (484)
Q Consensus       429 ~ln~~~~~~~f~~la~l~~~~~i~~~~~  456 (484)
                             ...|...++++++..++..+.
T Consensus       148 -------~~~~~~~~~~~~~~~~~~~~~  168 (399)
T TIGR00893       148 -------QWAFIIEGVLGIIWGVLWLKF  168 (399)
T ss_pred             -------hHHHHHHHHHHHHHHHHhhhe
Confidence                   345666666666655544443

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.16  E-value=0.00025  Score=75.30  Aligned_cols=113  Identities=11%  Similarity=0.042  Sum_probs=87.8

Q ss_pred             ccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCC
Q 011513          268 AASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRG  347 (484)
Q Consensus       268 ~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~  347 (484)
                      .+|..+...+...++.|+.+++.    +|++       ..+-+.+|.++.+++.+..+..                    
T Consensus        43 ~~~~~~~~~l~~~~~~~~~G~l~----D~~G-------rk~~l~~~~~~~~~~~~~~~~a--------------------   91 (495)
T PRK14995         43 LLWIIDIYSLVMAGMVLPMGALG----DRIG-------FKRLLMLGGTLFGLASLAAAFS--------------------   91 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH----HHhc-------cHHHHHHHHHHHHHHHHHHHHc--------------------
Confidence            35667777777788888877763    3432       2344777888888877776653                    


Q ss_pred             CCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcc-cCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513          348 AISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQ-FPENMRSIGGSLAFVGFAISNYLNGFLISMVHR  415 (484)
Q Consensus       348 ~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~-aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~  415 (484)
                          .+.++++...+++|+|.....|.....+.+. .|++.|+..+|++....++|..+|+.+++.+.+
T Consensus        92 ----~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~  156 (495)
T PRK14995         92 ----PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLE  156 (495)
T ss_pred             ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence                2456677788999999999999888877665 588999999999999999999999999988764

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.14  E-value=0.00011  Score=77.27  Aligned_cols=113  Identities=14%  Similarity=0.097  Sum_probs=87.8

Q ss_pred             ccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCC
Q 011513          268 AASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRG  347 (484)
Q Consensus       268 ~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~  347 (484)
                      .++..+...+..++..|+.+++.    +|++       ..+-+.+|.++.+++.+..+..                    
T Consensus        39 ~~~~~~~~~~~~~~~~~~~g~l~----dr~g-------~r~~~~~~~~~~~~~~~~~~~~--------------------   87 (485)
T TIGR00711        39 VQWVITSYMLANAISIPLTGWLA----KRFG-------TRRLFLISTFAFTLGSLLCGVA--------------------   87 (485)
T ss_pred             hhHHHHHHHHHHHHHHHhHHHHH----HHhC-------cHHHHHHHHHHHHHHHHHHhCc--------------------
Confidence            35677777788888888877753    4432       2234667777777766655432                    


Q ss_pred             CCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513          348 AISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR  415 (484)
Q Consensus       348 ~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~  415 (484)
                          .+.++++...++.|++.....+....++.+..|++.|+..+|++.....+|..+|+.+++.+.+
T Consensus        88 ----~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  151 (485)
T TIGR00711        88 ----PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIE  151 (485)
T ss_pred             ----CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhcc
Confidence                2455677788999999999999999999999999999999999999999999999999887653

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.13  E-value=0.00045  Score=71.18  Aligned_cols=127  Identities=12%  Similarity=0.135  Sum_probs=85.8

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhccc
Q 011513          304 ITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQF  383 (484)
Q Consensus       304 ~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~a  383 (484)
                      .+..+-+.+|++..++=+...+....         +          ....+..+...-+++|+.-.+...++..++.+.+
T Consensus       270 ~g~~~ll~~a~~~~~vR~~l~a~~~~---------~----------~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~  330 (400)
T PF03825_consen  270 FGIKWLLLLALVAYAVRWLLYAYFSD---------P----------WPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIA  330 (400)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHhcC---------C----------cHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhC
Confidence            45556677777777766666655411         0          0111112223335799999999999999999999


Q ss_pred             CchhhhhHHhhHHH-HHHHHHHHHHHHhHhhcccccCCCCCCCCCcCccCchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 011513          384 PENMRSIGGSLAFV-GFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKW  459 (484)
Q Consensus       384 P~~~~g~~~gl~~l-~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~i~~~~~~~~  459 (484)
                      |++.|+..||++.. ..++|..+|..++|.+.+.-+..+  -        -+...+|.+.+++.++..+++++..|+
T Consensus       331 p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~--~--------~~~~~~~~v~a~~~~~~~~~f~~~fk~  397 (400)
T PF03825_consen  331 PPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARG--M--------FDWSAVFLVFAVMALVILVLFVILFKP  397 (400)
T ss_pred             CccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchh--h--------hhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            99999999999886 468999999999988875321100  0        012346777777777777777776443

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.13  E-value=0.0002  Score=74.66  Aligned_cols=112  Identities=12%  Similarity=0.026  Sum_probs=84.3

Q ss_pred             cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513          269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA  348 (484)
Q Consensus       269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  348 (484)
                      +++.+...+...+..|+.+++    .+|++       +.+-+.+++++.+++.+..++..                    
T Consensus        61 g~~~~~~~~~~~~~~~~~G~l----~dr~g-------~r~~~~~~~~~~~~~~~~~~~~~--------------------  109 (434)
T PRK11663         61 GLLATLFYITYGVSKFVSGIV----SDRSN-------ARYFMGIGLIATGIINILFGFSS--------------------  109 (434)
T ss_pred             HHHHHHHHHHHHHHHhhhhHH----HhhcC-------CchhHHHHHHHHHHHHHHHHHHh--------------------
Confidence            455666667777777777775    34432       22346778888777776655532                    


Q ss_pred             CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513          349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR  415 (484)
Q Consensus       349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~  415 (484)
                          +.+.++...++.++++....+.....+.+..|++.||..+|++....++|..+++.+.+.+.+
T Consensus       110 ----~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~  172 (434)
T PRK11663        110 ----SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIAL  172 (434)
T ss_pred             ----HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                244455566788999988889999999999999999999999999999999999998887653

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.10  E-value=0.00033  Score=72.03  Aligned_cols=112  Identities=10%  Similarity=0.007  Sum_probs=87.4

Q ss_pred             cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513          269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA  348 (484)
Q Consensus       269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  348 (484)
                      ++..+...+...+..|+...+    .+|.       ...+-+.+++++.+++.+...+.                     
T Consensus        58 g~~~~~~~~~~~~~~~~~g~l----~Dr~-------grr~~~~~~~~~~~~~~~~~~~~---------------------  105 (394)
T PRK10213         58 GQSVTVTAFVAMFASLFITQT----IQAT-------DRRYVVILFAVLLTLSCLLVSFA---------------------  105 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----hccc-------CcHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence            445566777777778877765    3343       23344677888887777665443                     


Q ss_pred             CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513          349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR  415 (484)
Q Consensus       349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~  415 (484)
                         .+.++++...++.|++.....|...+++.+..|++.|+..+|++....++|..+++.+++.+.+
T Consensus       106 ---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~  169 (394)
T PRK10213        106 ---NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGE  169 (394)
T ss_pred             ---ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence               3456777788999999999999999999999999999999999999999999999999988753

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.10  E-value=0.0015  Score=68.83  Aligned_cols=80  Identities=16%  Similarity=0.168  Sum_probs=63.2

Q ss_pred             HHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCcCccCchhHHHHH
Q 011513          361 LSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYY  440 (484)
Q Consensus       361 ~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~  440 (484)
                      -++.|+.-.-..+..=++..+++|++..+.+.|+|.++.-..+.+||++.+.+.+.++               +..+-+.
T Consensus       387 a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg---------------~~r~g~~  451 (477)
T PF11700_consen  387 AVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG---------------SQRYGFL  451 (477)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------------CchhHHH
Confidence            3567777777888889999999999999999999999999999999999999987663               1233455


Q ss_pred             HHHHHHHHHHHHHHH
Q 011513          441 LVAALGLLNFGFFLL  455 (484)
Q Consensus       441 ~la~l~~~~~i~~~~  455 (484)
                      .+.++.++.++++..
T Consensus       452 ~l~~lf~~gl~ll~~  466 (477)
T PF11700_consen  452 FLLVLFLIGLILLFF  466 (477)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            566666666666544

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.08  E-value=0.00026  Score=72.39  Aligned_cols=134  Identities=16%  Similarity=0.160  Sum_probs=98.1

Q ss_pred             ccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCC
Q 011513          268 AASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRG  347 (484)
Q Consensus       268 ~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~  347 (484)
                      .++..+.+.+..++..|+.+++    .+|+       ...+-+.+|.++.+++.+..++.                    
T Consensus        40 ~g~~~s~~~~~~~~~~~~~g~l----~dr~-------g~r~~~~~~~~~~~~~~~l~~~~--------------------   88 (382)
T PRK10091         40 AGHMISYYALGVVVGAPIIALF----SSRY-------SLKHILLFLVALCVIGNAMFTLS--------------------   88 (382)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHH----HccC-------ccHHHHHHHHHHHHHHHHHHHHh--------------------
Confidence            3566777888888888887775    3443       23344667888887777766553                    


Q ss_pred             CCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCC
Q 011513          348 AISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLP  427 (484)
Q Consensus       348 ~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~  427 (484)
                          .+.+++....++.|+++....+.....+.+..|++.|+..+|++.....+|..+++.+++.+.+..      +|  
T Consensus        89 ----~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~------gw--  156 (382)
T PRK10091         89 ----SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEF------SW--  156 (382)
T ss_pred             ----CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhc------cH--
Confidence                245667778899999999888888899999999999999999999999999999988887764321      23  


Q ss_pred             cCccCchhHHHHHHHHHHHHHHHHH
Q 011513          428 EDLNKGRLDYFYYLVAALGLLNFGF  452 (484)
Q Consensus       428 ~~ln~~~~~~~f~~la~l~~~~~i~  452 (484)
                              ...|++.+++.++..+.
T Consensus       157 --------r~~f~~~~~~~~~~~~~  173 (382)
T PRK10091        157 --------RYTFLLIAVFNIAVLAS  173 (382)
T ss_pred             --------HHHHHHHHHHHHHHHHH
Confidence                    34566666655554443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.07  E-value=0.00029  Score=70.54  Aligned_cols=117  Identities=13%  Similarity=0.069  Sum_probs=88.4

Q ss_pred             cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513          269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA  348 (484)
Q Consensus       269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  348 (484)
                      +++.++..+..++..|+.+++.    +|++       ..+-+.++.++.+++.+...+....                  
T Consensus        37 g~~~~~~~~~~~i~~~~~G~l~----dr~g-------~r~~~~~~~~~~~~~~~~~~~~~~~------------------   87 (365)
T TIGR00900        37 SLAALAGMLPYVVLSPIAGALA----DRYD-------RKKVMIGADLIRAVLVAVLPFVALL------------------   87 (365)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHH----Hhhc-------hhHHHHHHHHHHHHHHHHHHHHHHc------------------
Confidence            5667777778888888877753    4432       2233556666666666655554320                  


Q ss_pred             CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513          349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR  415 (484)
Q Consensus       349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~  415 (484)
                       ...+.+++....++.+++..+..|...+++.+..|++.|+..+|+......+|..+|+.+++.+.+
T Consensus        88 -~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~  153 (365)
T TIGR00900        88 -GGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYA  153 (365)
T ss_pred             -CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence             013566777788999999999999999999999999999999999999999999999999887653

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.07  E-value=0.00025  Score=73.16  Aligned_cols=110  Identities=13%  Similarity=-0.024  Sum_probs=82.5

Q ss_pred             ccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCC
Q 011513          270 SYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAI  349 (484)
Q Consensus       270 ~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  349 (484)
                      .......+..++..|+.+++    .+|++       ..+-+.+|.++.+++++.....                      
T Consensus        50 l~~~~~~l~~~~~~~~~G~l----~dr~g-------~k~~l~~~~~~~~~~~~~~~~~----------------------   96 (400)
T PRK11646         50 IALGLRQFIQQGLGIFGGAI----ADRFG-------AKPMIVTGMLMRAAGFATMAIA----------------------   96 (400)
T ss_pred             HHHHHHHHHHHHHHhhhhHH----HHHhC-------chHHHHHHHHHHHHHHHHHHHh----------------------
Confidence            33444444555556666665    34432       2233667888888877766543                      


Q ss_pred             ccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513          350 SSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH  414 (484)
Q Consensus       350 ~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~  414 (484)
                        .+.|++....++.++++.+..|...+.+.+.+|++.|+..+|+.....++|..+|+.+++.+.
T Consensus        97 --~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~  159 (400)
T PRK11646         97 --HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL  159 (400)
T ss_pred             --ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              235667778899999999999999999999999999999999999999999999999998875

>PRK10054 putative transporter; Provisional

Probab=98.07  E-value=0.00023  Score=73.22  Aligned_cols=112  Identities=8%  Similarity=0.047  Sum_probs=82.7

Q ss_pred             ccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCC
Q 011513          268 AASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRG  347 (484)
Q Consensus       268 ~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~  347 (484)
                      .++..++..+..++..|+.+++.    +|+++       .+-+.+|.++.+++++...+.+.                  
T Consensus        45 ~g~~~s~~~~~~~~~~~~~G~l~----Dr~g~-------k~~~~~~~~~~~~~~~~~~~~~~------------------   95 (395)
T PRK10054         45 IGYAMTIALTIGVVFSLGFGILA----DKFDK-------KRYMLLAITAFASGFIAIPLVNN------------------   95 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH----hhcCc-------chhHHHHHHHHHHHHHHHHHHhH------------------
Confidence            35666676777778888888863    44322       23456777777777776665432                  


Q ss_pred             CCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513          348 AISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH  414 (484)
Q Consensus       348 ~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~  414 (484)
                            .+.++..+.+.+.+.....+.....+.+..|++.|+..+|+.+...++|..+|+.+++.+.
T Consensus        96 ------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~  156 (395)
T PRK10054         96 ------VTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV  156 (395)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  2333445567777777778888999999999999999999999999999999999988875

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.06  E-value=4.4e-05  Score=76.87  Aligned_cols=138  Identities=12%  Similarity=0.082  Sum_probs=96.6

Q ss_pred             cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513          269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA  348 (484)
Q Consensus       269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  348 (484)
                      +++.+...+...+..++.+++    .+|+++       .+-+.+|.++.+++.+..++..                    
T Consensus        33 g~~~~~~~~~~~~~~~~~g~l----~dr~g~-------r~~~~~~~~~~~~~~~~~~~~~--------------------   81 (379)
T TIGR00881        33 GLLLSSFSIAYGISKFVMGSV----SDRSNP-------RVFLPIGLILCAIVNLFFGFST--------------------   81 (379)
T ss_pred             HHHHHHHHHHHHhhhhhhhHH----HHhhCC-------eehhHHHHHHHHHHHHHHHHhh--------------------
Confidence            456667777777777777775    344322       2346677777777777765542                    


Q ss_pred             CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHH-HHhHhhcccccCCCCCCCCC
Q 011513          349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNG-FLISMVHRFTKGASTGDWLP  427 (484)
Q Consensus       349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~-~l~~~~~~~~~~~~~~~w~~  427 (484)
                          +.++++...++.|++.....+...+++.+..|++.|+..+|++.....+|..+++ .+...+...      .+|  
T Consensus        82 ----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------~~~--  149 (379)
T TIGR00881        82 ----SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAEL------YSW--  149 (379)
T ss_pred             ----hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhc------CCc--
Confidence                3455667788999999999999999999999999999999999999999999998 455444321      123  


Q ss_pred             cCccCchhHHHHHHHHHHHHHHHHHHHHhh
Q 011513          428 EDLNKGRLDYFYYLVAALGLLNFGFFLLCA  457 (484)
Q Consensus       428 ~~ln~~~~~~~f~~la~l~~~~~i~~~~~~  457 (484)
                              ...|++.++++++..++..+..
T Consensus       150 --------~~~~~~~~~~~~~~~~~~~~~~  171 (379)
T TIGR00881       150 --------HWVFIVPGIIAIIVSLICFLLL  171 (379)
T ss_pred             --------hhHHHHHHHHHHHHHHHHheee
Confidence                    2345666666666555444443

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.05  E-value=0.00019  Score=73.37  Aligned_cols=92  Identities=9%  Similarity=-0.024  Sum_probs=67.3

Q ss_pred             chHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhH-HHHHHHHHHHHHHHhHhhcccccCCCCCCCCCcCc
Q 011513          352 LSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLA-FVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDL  430 (484)
Q Consensus       352 ~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~-~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~l  430 (484)
                      .+++++++.-.+.++--.+......-+++++.|+++.++...+. .++.++|..+.+.+.+..++.-+            
T Consensus       310 ~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G------------  377 (412)
T PF01306_consen  310 TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIG------------  377 (412)
T ss_dssp             -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH------------
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcC------------
Confidence            45677777778888888899999999999999999998888775 57888999888888887765321            


Q ss_pred             cCchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 011513          431 NKGRLDYFYYLVAALGLLNFGFFLLCAKW  459 (484)
Q Consensus       431 n~~~~~~~f~~la~l~~~~~i~~~~~~~~  459 (484)
                          ....|++++++.++..++=.+.-++
T Consensus       378 ----~~~tylimg~iv~~~~li~~f~l~~  402 (412)
T PF01306_consen  378 ----FQHTYLIMGLIVLPFTLISAFTLKK  402 (412)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred             ----cHHHHHHHHHHHHHHHHHheeeecC
Confidence                2446777887777666655554443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.05  E-value=0.00066  Score=67.31  Aligned_cols=85  Identities=18%  Similarity=0.246  Sum_probs=70.5

Q ss_pred             hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecc-cccccchh
Q 011513           33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDV-SWAWGLGI  111 (484)
Q Consensus        33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~-g~~~~F~i  111 (484)
                      +...++.+..+++.|.+....-.++++-+-||++       .....+.|-.++++|+.+++.++..+.++. ||+.+...
T Consensus        98 ~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-------~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~  170 (395)
T COG2807          98 GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-------VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGF  170 (395)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-------hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHH
Confidence            5678999999999999999999999999999863       246778888999999999999999988876 79988877


Q ss_pred             hhHHHHHHHHHHH
Q 011513          112 PAFMMFLSCAMFF  124 (484)
Q Consensus       112 ~~~~~~l~~i~~l  124 (484)
                      =++.-++++++.+
T Consensus       171 WAl~allAl~~Wl  183 (395)
T COG2807         171 WALLALLALLIWL  183 (395)
T ss_pred             HHHHHHHHHHHHh
Confidence            6666666665544

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.04  E-value=1.6e-05  Score=79.25  Aligned_cols=146  Identities=16%  Similarity=0.158  Sum_probs=115.8

Q ss_pred             ccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCC
Q 011513          268 AASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRG  347 (484)
Q Consensus       268 ~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~  347 (484)
                      .+++...-.++-++..|+++.++    .|.       ....-|.+|++++..+-++.++.+.                  
T Consensus       108 iG~LFaskA~~qllvnp~~G~l~----~~i-------Gy~ipm~~Gl~vmf~sTilFafg~s------------------  158 (464)
T KOG3764|consen  108 IGLLFASKALVQLLVNPFFGNLI----DRI-------GYKIPMVAGLFVMFLSTILFAFGNS------------------  158 (464)
T ss_pred             hhHHHHHHHHHHHHhcccchhhH----HHh-------ccccHHHHHHHHHHHHHHHHHHcch------------------
Confidence            35555556666677777776653    343       3334588999999999999888754                  


Q ss_pred             CCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchh-hhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCC
Q 011513          348 AISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENM-RSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWL  426 (484)
Q Consensus       348 ~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~-~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~  426 (484)
                            .+.++.+..++|+|..+.+..+++++++.-|++. ||..||.-.-+.++|..+|+.+++++++.-+        
T Consensus       159 ------y~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G--------  224 (464)
T KOG3764|consen  159 ------YPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG--------  224 (464)
T ss_pred             ------hHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcC--------
Confidence                  3356788999999999999999999999999988 5999999999999999999999999987643        


Q ss_pred             CcCccCchhHHHHHHHHHHHHHHHHHHHHhhhcccccC
Q 011513          427 PEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKG  464 (484)
Q Consensus       427 ~~~ln~~~~~~~f~~la~l~~~~~i~~~~~~~~~~~~~  464 (484)
                              .+.=|.++++++++..++-+++.+.++..+
T Consensus       225 --------k~aPFlVL~~v~Lld~~L~l~vi~p~~~~~  254 (464)
T KOG3764|consen  225 --------KSAPFLVLAIVLLLDGALQLLVIEPTEMDP  254 (464)
T ss_pred             --------CcCcHHHHHHHHHHHHHHHHheeCccccCc
Confidence                    123578999999999988888777665544

>TIGR00891 2A0112 putative sialic acid transporter

Probab=98.04  E-value=0.00024  Score=72.42  Aligned_cols=113  Identities=14%  Similarity=0.158  Sum_probs=86.8

Q ss_pred             ccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCC
Q 011513          268 AASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRG  347 (484)
Q Consensus       268 ~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~  347 (484)
                      .+++.++..+...+..|+.+.+.    +|++       ..+-+.++.++.+++.+..++.                    
T Consensus        49 ~g~~~~~~~~~~~~~~~~~G~l~----Dr~g-------~r~~~~~~~~~~~~~~~~~~~~--------------------   97 (405)
T TIGR00891        49 AASLISAALISRWFGALMFGLWG----DRYG-------RRLPMVTSIVLFSAGTLACGFA--------------------   97 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH----HHhc-------cHHHHHHHHHHHHHHHHHHHHh--------------------
Confidence            35667777778888888888763    4432       2234566777777766665443                    


Q ss_pred             CCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513          348 AISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR  415 (484)
Q Consensus       348 ~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~  415 (484)
                          .+.+++....++.|+++....+....++.+..|++.|+..+|++....++|..+++.+.+.+.+
T Consensus        98 ----~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~  161 (405)
T TIGR00891        98 ----PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVP  161 (405)
T ss_pred             ----ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                2345566778999999999999999999999999999999999999999999999998877643

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.04  E-value=0.00027  Score=60.02  Aligned_cols=107  Identities=20%  Similarity=0.274  Sum_probs=77.6

Q ss_pred             hhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccc
Q 011513          273 IFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSL  352 (484)
Q Consensus       273 ~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  352 (484)
                      +...+..++..|+.+++    .+|.+       ..+-+.++..+.+++.+.....                        .
T Consensus         5 ~~~~~~~~~~~~~~g~~----~d~~g-------~~~~~~~~~~~~~~~~~~~~~~------------------------~   49 (141)
T TIGR00880         5 AGYALGQLIYSPLSGLL----TDRFG-------RKPVLLVGLFIFVLSTAMFALS------------------------S   49 (141)
T ss_pred             EeehhHHHHHHhhHHHH----Hhhcc-------hhHHHHHHHHHHHHHHHHHHHh------------------------c
Confidence            34455666667766664    23322       2233556666666665554432                        2


Q ss_pred             hHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513          353 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH  414 (484)
Q Consensus       353 s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~  414 (484)
                      +.+++....++.+++.....+.....+.+..|++.|+..+|+......+|..+++.+.+.+.
T Consensus        50 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  111 (141)
T TIGR00880        50 NITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLA  111 (141)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHh
Confidence            24455567788999999999999999999999999999999999999999999999988765

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.03  E-value=0.00078  Score=73.00  Aligned_cols=92  Identities=16%  Similarity=0.257  Sum_probs=69.8

Q ss_pred             hhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeec---------
Q 011513           32 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSD---------  102 (484)
Q Consensus        32 ~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~---------  102 (484)
                      .-..+|++|.++.|+|...+.|--.+++=|-..++      .....++++|..--+|.++|.+++++.-+-         
T Consensus       235 ~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~------~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~  308 (735)
T KOG3626|consen  235 YPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKK------NSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPI  308 (735)
T ss_pred             hhHHHHHHHHHHhhcCCCCCccCCCcccccccccc------CCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCC
Confidence            34568999999999999988776666655554432      235789999999999999999998765221         


Q ss_pred             ----------ccccccchhhhHHHHHHHHHHHhccce
Q 011513          103 ----------VSWAWGLGIPAFMMFLSCAMFFLGSRL  129 (484)
Q Consensus       103 ----------~g~~~~F~i~~~~~~l~~i~~l~~~~~  129 (484)
                                --||++|++++.+++++.+.+++.-|.
T Consensus       309 ~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~  345 (735)
T KOG3626|consen  309 GITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKE  345 (735)
T ss_pred             CCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence                      139999999999999998887764443

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.02  E-value=0.00023  Score=75.55  Aligned_cols=119  Identities=14%  Similarity=0.078  Sum_probs=82.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCch
Q 011513          307 LQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPEN  386 (484)
Q Consensus       307 ~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~  386 (484)
                      ..-..++++..+++.++..+..                        +.+-++..-++.|+..............+..+.+
T Consensus       365 ~~~~~~~ll~~gl~~~~~p~~~------------------------~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~  420 (509)
T KOG2504|consen  365 LVLFLLTLLIAGLARLFLPFAT------------------------TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLE  420 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh
Confidence            3346667777777765544432                        2233444557778887777777778888999999


Q ss_pred             hhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCcCccCchhHHHHHHHHHHHHHHHHHHHHhhhcccccC
Q 011513          387 MRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKG  464 (484)
Q Consensus       387 ~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~i~~~~~~~~~~~~~  464 (484)
                      .-+...|+..+..+++.++|+.+.+.+.+.++               +++..|...++..+++.+.+.+....+++++
T Consensus       421 ~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg---------------~Y~~~f~~~g~~~~~s~~~~~~~~~~~~~~~  483 (509)
T KOG2504|consen  421 KLSNAYGLLLLFQGIGALVGPPIAGLLYDITG---------------NYDHAFYFCGLCFLLSAVLLLILRECLKRRE  483 (509)
T ss_pred             hcchHHHHHHHHhHHHHHcCcccceeeeeccC---------------CeeeehhhcChHHHHHHHHHHHhHHHHHhcc
Confidence            99999999999999999999999988777652               2455666677777777666655542344443

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.02  E-value=0.00052  Score=71.69  Aligned_cols=60  Identities=8%  Similarity=-0.138  Sum_probs=45.4

Q ss_pred             hhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhhee
Q 011513           32 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVY   98 (484)
Q Consensus        32 ~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~   98 (484)
                      .+...+++.+++.++| |...+.....+.++|++++      +..++.++....|+|..++..+.+.
T Consensus       126 ~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~------rG~A~Gi~~g~G~~G~~l~~~l~p~  185 (462)
T PRK15034        126 TPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK------QGSALGINGGLGNLGVSVMQLVAPL  185 (462)
T ss_pred             CCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH------hHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            3577899999999998 6677889999999998632      3567888777778888766555433

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=97.99  E-value=0.00024  Score=71.72  Aligned_cols=87  Identities=11%  Similarity=0.061  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeeccc---ccccchh
Q 011513           35 AFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVS---WAWGLGI  111 (484)
Q Consensus        35 ~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g---~~~~F~i  111 (484)
                      +.+++.-.+++++-|-| ....+.+...||+++      ...+..++= +-|+|..+...+++++....|   |+.+-.+
T Consensus       106 ~~ll~~gll~G~~GasF-av~m~~~s~~fP~~~------qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i  177 (417)
T COG2223         106 WQLLVIGLLLGLAGASF-AVGMPNASFFFPKEK------QGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGI  177 (417)
T ss_pred             HHHHHHHHHHhccccee-hcccccccccCChhh------hhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            45666667777776665 556678889999753      245777777 899999999999999998899   9999999


Q ss_pred             hhHHHHHHHHHHHhccce
Q 011513          112 PAFMMFLSCAMFFLGSRL  129 (484)
Q Consensus       112 ~~~~~~l~~i~~l~~~~~  129 (484)
                      ..+.++++.+.+++..+.
T Consensus       178 ~~~~l~v~~v~~~~~~~d  195 (417)
T COG2223         178 YVVALAIAAVLAWLGMND  195 (417)
T ss_pred             HHHHHHHHHHHHHHHhCC
Confidence            999999988888775443

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.92  E-value=0.0002  Score=74.15  Aligned_cols=159  Identities=12%  Similarity=0.147  Sum_probs=110.5

Q ss_pred             cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513          269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA  348 (484)
Q Consensus       269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  348 (484)
                      +...+++-..-+++-++..++    ++|+       ...+-|.+|+.+.++=++.+.+++                    
T Consensus       409 Gv~~a~~~~gEI~~~ffs~kl----I~ki-------GHv~v~~lgLa~~~~Rf~~~S~L~--------------------  457 (618)
T KOG3762|consen  409 GVVSALCHAGEILFYFFSFKL----IEKI-------GHVNVMYLGLACNVGRFLYYSYLQ--------------------  457 (618)
T ss_pred             eehhhhhccchHHHHHHHHHH----HHHh-------cccceeeehhhHHHHHHHHHHHhc--------------------
Confidence            444445555555555554443    4553       334557788888887777776653                    


Q ss_pred             CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHH-HHHHHHHHHHHHhHhhcccccCCCCCCCCC
Q 011513          349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFV-GFAISNYLNGFLISMVHRFTKGASTGDWLP  427 (484)
Q Consensus       349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l-~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~  427 (484)
                          ++|..+|--++.++.-.+++.+..+++...+|++++..++|+.-. ..++|.-+|+++++.+...-       |  
T Consensus       458 ----n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f-------g--  524 (618)
T KOG3762|consen  458 ----NPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERF-------G--  524 (618)
T ss_pred             ----CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheee-------h--
Confidence                344455666999999999999999999999999999999998774 44777777777777664321       1  


Q ss_pred             cCccCchhHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccccccccC
Q 011513          428 EDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAPEVAMEKLN  478 (484)
Q Consensus       428 ~~ln~~~~~~~f~~la~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (484)
                             ...+|...++.+++.+++++.+-+..+++...|++..+.+++.+
T Consensus       525 -------~~ttf~~~giAcl~~l~~~~~iq~~l~~~~~i~~~~~~e~~s~s  568 (618)
T KOG3762|consen  525 -------ARTTFRIFGIACLVTLALFISIQLLLKRRGFIKEQGLLEMESTS  568 (618)
T ss_pred             -------hHHHHHHHHHHHHHHHHHHHHhhhhhccccccCccCCcCccccc
Confidence                   24577778888888888888887777777666665555554433

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=97.92  E-value=0.00099  Score=68.30  Aligned_cols=136  Identities=14%  Similarity=0.132  Sum_probs=91.7

Q ss_pred             cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513          269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA  348 (484)
Q Consensus       269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  348 (484)
                      ++..++..+...+..|+.+++.    +|++       ..+-+.++.++.+++.+.....                     
T Consensus        57 g~~~~~~~~~~~~~~~~~g~l~----dr~g-------~r~~~~~~~~~~~~~~~~~~~~---------------------  104 (408)
T PRK09874         57 GLVFSITFLFSAIASPFWGGLA----DRKG-------RKIMLLRSALGMGIVMVLMGLA---------------------  104 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh----hhhC-------cHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence            4456666777788888877763    3432       1223556666666666554442                     


Q ss_pred             CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCc
Q 011513          349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPE  428 (484)
Q Consensus       349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~  428 (484)
                         .+.++++...++.+++..+ .+...+.+.+..|++.|+..+|+......+|..+++.+.+.+.+..      +|   
T Consensus       105 ---~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------~~---  171 (408)
T PRK09874        105 ---QNIWQFLILRALLGLLGGF-VPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSY------GL---  171 (408)
T ss_pred             ---hhHHHHHHHHHHHHHhhhh-HHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CH---
Confidence               2355666777888888765 4667788889999999999999999999999999999988765322      23   


Q ss_pred             CccCchhHHHHHHHHHHHHHHHHHHHHh
Q 011513          429 DLNKGRLDYFYYLVAALGLLNFGFFLLC  456 (484)
Q Consensus       429 ~ln~~~~~~~f~~la~l~~~~~i~~~~~  456 (484)
                             ...|++.+++.++..+...+.
T Consensus       172 -------~~~~~~~~~~~~~~~~~~~~~  192 (408)
T PRK09874        172 -------RPVFFITASVLFLCFLVTLFC  192 (408)
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHH
Confidence                   345666666666555544443

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=97.91  E-value=0.00048  Score=71.38  Aligned_cols=88  Identities=13%  Similarity=0.033  Sum_probs=65.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccC--
Q 011513          307 LQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFP--  384 (484)
Q Consensus       307 ~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP--  384 (484)
                      .+-+.+|.++.+++.+...+...                      -+.++.+...++.++|-....+.-++++.+.+.  
T Consensus       302 k~~~~~~~~~~~i~~~~~~f~~~----------------------~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyg  359 (467)
T COG2211         302 KKLFLIGLLLLAVGYLLLYFTPA----------------------GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYG  359 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcC----------------------cchHHHHHHHHHHHHHhhccccccHHHhcchhhHH
Confidence            34577888888888888777531                      234455556688888888888888888887665  


Q ss_pred             -----chhhhhHHhhHHHHHHHHHHHHHHHhHhhccc
Q 011513          385 -----ENMRSIGGSLAFVGFAISNYLNGFLISMVHRF  416 (484)
Q Consensus       385 -----~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~  416 (484)
                           ++..|.+-|.+.+..=+|..+++.+.+++-..
T Consensus       360 e~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~  396 (467)
T COG2211         360 EWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGA  396 (467)
T ss_pred             HHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 45678888888888888888888887776543

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=97.90  E-value=0.00097  Score=69.03  Aligned_cols=115  Identities=12%  Similarity=0.024  Sum_probs=89.6

Q ss_pred             ccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCC
Q 011513          268 AASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRG  347 (484)
Q Consensus       268 ~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~  347 (484)
                      .+++.+...+..++..|+.+++    .+|++       ..+-+.+|+++.+++.+.......                  
T Consensus        40 ~g~l~s~~~~g~~i~~~~~g~l----~~r~G-------~r~~~~~g~~l~~~g~~l~~~~~~------------------   90 (410)
T TIGR00885        40 AALVQSAFYGGYFIMAIPAAIF----MKKLS-------YKAGILLGLFLYALGAFLFWPAAE------------------   90 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----HHHhC-------chHHHHHHHHHHHHHHHHHHHHHh------------------
Confidence            4667778888888888887775    45543       334577888888888766543321                  


Q ss_pred             CCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513          348 AISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH  414 (484)
Q Consensus       348 ~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~  414 (484)
                         ..+.++++...++.|+|..+..+....++.+.+|++.++..+++.....++|..+|+.++..+.
T Consensus        91 ---~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~  154 (410)
T TIGR00885        91 ---IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI  154 (410)
T ss_pred             ---hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               1345566677789999999999999999999999999999999999999999999999987664

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=97.90  E-value=0.001  Score=68.09  Aligned_cols=135  Identities=16%  Similarity=0.153  Sum_probs=93.9

Q ss_pred             cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513          269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA  348 (484)
Q Consensus       269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  348 (484)
                      ++..++..+..++..|+.+++.    +|.++       .+-+.+|.++.+++.......                     
T Consensus        41 ~~~~~~~~~~~~~~~~~~G~l~----Dr~g~-------r~~l~~~~~~~~i~~~~~~~~---------------------   88 (392)
T PRK10473         41 HIAFSVYLAGMAAAMLFAGKIA----DRSGR-------KPVAIPGAALFIIASLLCSLA---------------------   88 (392)
T ss_pred             HHHHHHHHHHHHHHHHhHhHHH----HHhCC-------hHHHHHHHHHHHHHHHHHHHh---------------------
Confidence            4455666666777788888764    44321       123556777777776665442                     


Q ss_pred             CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCc
Q 011513          349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPE  428 (484)
Q Consensus       349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~  428 (484)
                         .+.++++...++.|++.....+.....+.+..|++.|+..+|+++....+|..+++.+++.+.+..      +|   
T Consensus        89 ---~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~------g~---  156 (392)
T PRK10473         89 ---ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKF------PW---  156 (392)
T ss_pred             ---CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc------Ch---
Confidence               234556667789999999999999999999999999999999999988999999998887764321      23   


Q ss_pred             CccCchhHHHHHHHHHHHHHHHHHHH
Q 011513          429 DLNKGRLDYFYYLVAALGLLNFGFFL  454 (484)
Q Consensus       429 ~ln~~~~~~~f~~la~l~~~~~i~~~  454 (484)
                             ...|++.++++++..++..
T Consensus       157 -------~~~~~~~~~~~~i~~~~~~  175 (392)
T PRK10473        157 -------QSLFYTMAAMGILVLLLSL  175 (392)
T ss_pred             -------HHHHHHHHHHHHHHHHHHH
Confidence                   3455666666555554433

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=97.89  E-value=0.00061  Score=71.08  Aligned_cols=144  Identities=14%  Similarity=0.094  Sum_probs=94.3

Q ss_pred             cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513          269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA  348 (484)
Q Consensus       269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  348 (484)
                      ++..++..+...+..++.+++    .+|+++       .+-+.+|.++.+++.+..+....                   
T Consensus        64 g~~~~~~~~~~~~~~~~~G~l----~dr~g~-------~~~~~~~~~~~~~~~~~~~~~~~-------------------  113 (438)
T TIGR00712        64 GFALSAISIAYGFSKFIMGSV----SDRSNP-------RVFLPAGLILSAAVMLLMGFVPW-------------------  113 (438)
T ss_pred             HHHHHHHHHHHHHhhhccchh----hhccCC-------ceehHHHHHHHHHHHHHHhcccc-------------------
Confidence            455566666667777777765    344422       12355677777777666544321                   


Q ss_pred             CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCc
Q 011513          349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPE  428 (484)
Q Consensus       349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~  428 (484)
                       ...+.+.+....++.++++....+...+.+.+..|++.||..+|+++...++|..+++.+.+......     .+|   
T Consensus       114 -~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~-----~~w---  184 (438)
T TIGR00712       114 -ATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWF-----NDW---  184 (438)
T ss_pred             -ccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHh-----hhh---
Confidence             01234445566788899998888888899999999999999999999999999999887765432111     134   


Q ss_pred             CccCchhHHHHHHHHHHHHHHHHHHHHhhh
Q 011513          429 DLNKGRLDYFYYLVAALGLLNFGFFLLCAK  458 (484)
Q Consensus       429 ~ln~~~~~~~f~~la~l~~~~~i~~~~~~~  458 (484)
                             ...|++.++++++..++..++.|
T Consensus       185 -------~~~f~~~~~~~~i~~~~~~~~~~  207 (438)
T TIGR00712       185 -------HAALYFPAICAIIVALFAFAMMR  207 (438)
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHhcc
Confidence                   34566666666665554444443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK10504 putative transporter; Provisional

Probab=97.89  E-value=0.00088  Score=70.40  Aligned_cols=137  Identities=11%  Similarity=0.151  Sum_probs=93.4

Q ss_pred             cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513          269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA  348 (484)
Q Consensus       269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  348 (484)
                      ++..+...+...+..|+.+++    .+|++       ..+-+..++++.+++.+..++.                     
T Consensus        48 ~~~~~~~~~~~~~~~~~~g~l----~d~~g-------~r~~~~~~~~~~~~~~~~~~~~---------------------   95 (471)
T PRK10504         48 HMVIVSYVLTVAVMLPASGWL----ADRVG-------VRNIFFTAIVLFTLGSLFCALS---------------------   95 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHHhc-------hHHHHHHHHHHHHHHHHHHHHh---------------------
Confidence            345555556666777777765    34432       1233455666666666554332                     


Q ss_pred             CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCc
Q 011513          349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPE  428 (484)
Q Consensus       349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~  428 (484)
                         .+.++++...++.|+|.....|.....+.+..|++.++..+|+......+|..+|+.+++.+.+..      +|   
T Consensus        96 ---~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~------gw---  163 (471)
T PRK10504         96 ---GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYA------SW---  163 (471)
T ss_pred             ---CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhc------cH---
Confidence               234556677899999999999999999999999999999999999999999999999988875422      23   


Q ss_pred             CccCchhHHHHHHHHHHHHHHHHHHHHh
Q 011513          429 DLNKGRLDYFYYLVAALGLLNFGFFLLC  456 (484)
Q Consensus       429 ~ln~~~~~~~f~~la~l~~~~~i~~~~~  456 (484)
                             ...|.+.+.++++..+.....
T Consensus       164 -------~~~f~~~~~~~~l~~~~~~~~  184 (471)
T PRK10504        164 -------HWIFLINIPVGIIGAIATLML  184 (471)
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHh
Confidence                   345555555555554444433

>TIGR00895 2A0115 benzoate transport

Probab=97.88  E-value=0.0002  Score=72.76  Aligned_cols=112  Identities=13%  Similarity=0.180  Sum_probs=83.0

Q ss_pred             cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513          269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA  348 (484)
Q Consensus       269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  348 (484)
                      +++.++..+..++..++.+++.    +|++       ..+-+.+|.++.+++.+...+.                     
T Consensus        55 ~~~~~~~~~~~~~~~~~~g~l~----d~~g-------~~~~~~~~~~~~~~~~~~~~~~---------------------  102 (398)
T TIGR00895        55 GFLFSAGLIGMAFGALFFGPLA----DRIG-------RKRVLLWSILLFSVFTLLCALA---------------------  102 (398)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHH----HHhh-------hHHHHHHHHHHHHHHHHHHHHc---------------------
Confidence            4555666666677777766653    3432       2234566777777666665442                     


Q ss_pred             CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513          349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR  415 (484)
Q Consensus       349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~  415 (484)
                         .+.++++...++.+++.....+....++.+..|++.|+..+|+......+|..+++.+++.+.+
T Consensus       103 ---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  166 (398)
T TIGR00895       103 ---TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIP  166 (398)
T ss_pred             ---cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhh
Confidence               2344566678899999999999999999999999999999999999999999999999877653

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.87  E-value=0.00041  Score=72.37  Aligned_cols=88  Identities=11%  Similarity=-0.043  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhhh
Q 011513           34 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPA  113 (484)
Q Consensus        34 ~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~~  113 (484)
                      .....+.+++..+|.....-...++..+.-.++..+    +...-++.|.+..+|++++..+.|++.++.+++..|.+++
T Consensus        86 ~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~----~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~  161 (433)
T PF03092_consen   86 AAIAVVLLFLASFGYAFADVAADALVVELARREPES----RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISA  161 (433)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch----hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHH
Confidence            334566777889999999999999999887655322    3455668889999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHh
Q 011513          114 FMMFLSCAMFFL  125 (484)
Q Consensus       114 ~~~~l~~i~~l~  125 (484)
                      +.-.+..+..++
T Consensus       162 ~~~~l~~~~~~~  173 (433)
T PF03092_consen  162 ALPLLMLIVALF  173 (433)
T ss_pred             HHHHHHHHHHHH
Confidence            777766554443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK03699 putative transporter; Provisional

Probab=97.86  E-value=0.0012  Score=67.68  Aligned_cols=111  Identities=11%  Similarity=0.102  Sum_probs=81.0

Q ss_pred             cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513          269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA  348 (484)
Q Consensus       269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  348 (484)
                      ++..+...+..++..++.+++.    +|++       ..+-+.++.++.+++.+..++.                     
T Consensus        45 g~~~s~~~~~~~i~~~~~g~l~----dr~g-------~r~~~~~~~~~~~i~~~l~~~~---------------------   92 (394)
T PRK03699         45 SNTFTFLNAGILISIFLNAWLM----EIIP-------LKRQLIFGFALMILAVAGLMFS---------------------   92 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----HHhh-------HHHHHHHHHHHHHHHHHHHHHc---------------------
Confidence            4555666667777777777753    3432       2234566777777776665543                     


Q ss_pred             CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513          349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH  414 (484)
Q Consensus       349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~  414 (484)
                         .+.++++...++.|+++....+.....+.+..|++.|+..++......++|..+++.+.+.+.
T Consensus        93 ---~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  155 (394)
T PRK03699         93 ---HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLL  155 (394)
T ss_pred             ---chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               234556677889999999888888999999999999999999988888899999888876653

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=97.85  E-value=0.00027  Score=71.35  Aligned_cols=116  Identities=16%  Similarity=0.163  Sum_probs=90.4

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhccc
Q 011513          304 ITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQF  383 (484)
Q Consensus       304 ~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~a  383 (484)
                      .+|.+-+.+|++++++..+.+++.+                        |.+.++..+++.|+-+..-.|.....++.--
T Consensus        91 ~npr~fm~~gLilsai~nil~Gfs~------------------------s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wf  146 (448)
T COG2271          91 SNPRYFMAFGLILSAIVNILFGFSP------------------------SLFLFAVLWVLNGWFQGMGWPPCARTITHWF  146 (448)
T ss_pred             CCCceeehHHHHHHHHHHHHHhhhh------------------------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Confidence            4555668999999999999988753                        4556666778888888888899999999999


Q ss_pred             CchhhhhHHhhHHHHHHHHHHHHHHHh--HhhcccccCCCCCCCCCcCccCchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 011513          384 PENMRSIGGSLAFVGFAISNYLNGFLI--SMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKW  459 (484)
Q Consensus       384 P~~~~g~~~gl~~l~~~iG~~lg~~l~--~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~i~~~~~~~~  459 (484)
                      |++.||+..++|+.+.++|+.+.+.+.  +.+...      .+|          ...|++-++++++..++.++..|.
T Consensus       147 sr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~------~~w----------~~~f~~pgiiaiival~~~~~~rd  208 (448)
T COG2271         147 SRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFH------GGW----------RAAFYFPGIIAIIVALILLFLLRD  208 (448)
T ss_pred             CccccCceEEEehhhhhcccchHHHHHHHHHHHhc------cch----------hHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999999999999999999999888  554321      134          345667777777777666554443

>PRK12307 putative sialic acid transporter; Provisional

Probab=97.84  E-value=0.00098  Score=68.92  Aligned_cols=111  Identities=14%  Similarity=0.232  Sum_probs=86.5

Q ss_pred             cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513          269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA  348 (484)
Q Consensus       269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  348 (484)
                      ++..++..+..++..|+.+++    .+|++       ..+-+.+|.++.+++.+..++.+                    
T Consensus        56 ~~~~~~~~~~~~l~~~~~g~l----~dr~g-------~r~~l~~~~~~~~~~~~~~~~~~--------------------  104 (426)
T PRK12307         56 AFLATAAFIGRPFGGALFGLL----ADKFG-------RKPLMMWSIVAYSVGTGLSGLAS--------------------  104 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHHhC-------ChHHHHHHHHHHHHHHHHHHHHh--------------------
Confidence            456667777777888877775    34432       22446678888888777665542                    


Q ss_pred             CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513          349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH  414 (484)
Q Consensus       349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~  414 (484)
                          +.+++....++.|+|+....+....++.+..|++.|+..+|++....++|..+++.+.+.+.
T Consensus       105 ----~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~  166 (426)
T PRK12307        105 ----GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFA  166 (426)
T ss_pred             ----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHc
Confidence                35566777899999999999999999999999999999999999999999999988876654

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=97.84  E-value=0.00084  Score=70.54  Aligned_cols=212  Identities=14%  Similarity=0.052  Sum_probs=115.3

Q ss_pred             HHhHhhHHHHHHHHHHHHHHhchhhHHHHHHHhcCCCCCCccccccccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCC
Q 011513          222 KVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKE  301 (484)
Q Consensus       222 k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~~~~~~~~g~~g~~i~~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~  301 (484)
                      .+++++.-.+...-+.|.......+.+ .+..+++..        -.+....+.++.-++.+|+.+++.+....|+++| 
T Consensus         4 ~~li~~~~~~~Giq~~~~l~~~~l~~y-l~~lg~~~~--------~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRR-   73 (477)
T TIGR01301         4 RKLLRVASVAAGVQFGWALQLSLLTPY-VQELGIPHA--------WASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRR-   73 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCHH--------HHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCCh-
Confidence            344554555555555555544333333 232222211        1356677788888999999998876544454322 


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCC-CCccchHHHHHHHHHHHHhHHHHHHhHHHHHhh
Q 011513          302 GGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRG-AISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYY  380 (484)
Q Consensus       302 ~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~  380 (484)
                         ++.  +..|.+..+++++.+++........    +    ++.+ .......++.+..+.+..++--...+..-+++.
T Consensus        74 ---rp~--il~g~~~~~~~l~ll~~~~~~~~~~----~----~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALia  140 (477)
T TIGR01301        74 ---RPF--IAAGAALVAFAVILIGFAADIGHLF----G----DNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLA  140 (477)
T ss_pred             ---HHH--HHHHHHHHHHHHHHHHhCchhhhhc----c----ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence               111  3446667777777766543211000    0    0000 011122234444444555566666677789999


Q ss_pred             cccCchhh--hhHHhhHHHHHHHHHHHHHHHhHhhcccc--c--CCCCCCCCCcCccCchhHHHHHHHHHHHHHHHHHHH
Q 011513          381 KQFPENMR--SIGGSLAFVGFAISNYLNGFLISMVHRFT--K--GASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFL  454 (484)
Q Consensus       381 ~~aP~~~~--g~~~gl~~l~~~iG~~lg~~l~~~~~~~~--~--~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~i~~~  454 (484)
                      +.+|++.|  +...+......++|+.+|..++++.....  +  .....+.++     .+....|.+-+++.++..++-.
T Consensus       141 Dl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~F~i~a~~l~i~~l~t~  215 (477)
T TIGR01301       141 DLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSC-----ANLKSCFLIDIILLAILTYIAL  215 (477)
T ss_pred             cccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccccccccccc-----chHHHHHHHHHHHHHHHHHHHe
Confidence            99999976  57888888899999999999887642111  0  000011111     1345566666666666555555


Q ss_pred             Hhhhccc
Q 011513          455 LCAKWYK  461 (484)
Q Consensus       455 ~~~~~~~  461 (484)
                      +..|-++
T Consensus       216 ~~v~E~~  222 (477)
T TIGR01301       216 SAVKENP  222 (477)
T ss_pred             eeeeccC
Confidence            5555443

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=97.84  E-value=0.00068  Score=68.76  Aligned_cols=136  Identities=14%  Similarity=0.160  Sum_probs=95.4

Q ss_pred             cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513          269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA  348 (484)
Q Consensus       269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  348 (484)
                      ++..++..+...+..++.+++    .+|++       ..+-+.+|.++.+++.......+                    
T Consensus        29 ~~~~~~~~~~~~~~~~~~g~l----~d~~g-------~~~~~~~~~~~~~i~~~~~~~~~--------------------   77 (377)
T PRK11102         29 QMTLSAYILGFAIGQLFYGPM----ADSFG-------RKPVILGGTLVFALAAVACALAQ--------------------   77 (377)
T ss_pred             HHHHHHHHHHHHHHHHhhchH----HhhcC-------ChHHHHHHHHHHHHHHHHHHHHc--------------------
Confidence            445566666667777776664    33432       23346678877777777765532                    


Q ss_pred             CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCc
Q 011513          349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPE  428 (484)
Q Consensus       349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~  428 (484)
                          +.+.+....++.+++.....+...+++.+..|++.|+..+|++.....+|..+++.+++.+.+..      +|   
T Consensus        78 ----~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------~~---  144 (377)
T PRK11102         78 ----TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWF------SW---  144 (377)
T ss_pred             ----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------Ch---
Confidence                23445567788999999999999999999999999999999999999999999999987765422      23   


Q ss_pred             CccCchhHHHHHHHHHHHHHHHHHHHH
Q 011513          429 DLNKGRLDYFYYLVAALGLLNFGFFLL  455 (484)
Q Consensus       429 ~ln~~~~~~~f~~la~l~~~~~i~~~~  455 (484)
                             ...|+..++++++..+....
T Consensus       145 -------~~~~~~~~~~~~~~~~~~~~  164 (377)
T PRK11102        145 -------HAIFWVLALAAILAAALVFF  164 (377)
T ss_pred             -------HHHHHHHHHHHHHHHHHHHH
Confidence                   34566666666555444433

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=97.84  E-value=0.0014  Score=67.96  Aligned_cols=134  Identities=10%  Similarity=0.104  Sum_probs=92.4

Q ss_pred             cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513          269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA  348 (484)
Q Consensus       269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  348 (484)
                      ++..++..+...+.+++.+.+    .+|+++       .+-+..|+++.+++.+..+..                     
T Consensus        54 ~~~~s~~~~~~~~~~~~~G~l----~dr~Gr-------r~~l~~~~~~~~~~~~~~~~a---------------------  101 (413)
T PRK15403         54 PASVSLYLAGGMALQWLLGPL----SDRIGR-------RPVLITGALIFTLACAATLFT---------------------  101 (413)
T ss_pred             HHHHHHHHHHHHHHHHhhhHH----HHHcCc-------hHHHHHHHHHHHHHHHHHHHc---------------------
Confidence            344445555556666666554    455432       234666777777666655443                     


Q ss_pred             CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCc
Q 011513          349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPE  428 (484)
Q Consensus       349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~  428 (484)
                         .+.++++...+++|+++.+..+.....+.+..|++.++..+|++.....+|..+|+.+++.+.+..      +|   
T Consensus       102 ---~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~------gw---  169 (413)
T PRK15403        102 ---TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFV------HW---  169 (413)
T ss_pred             ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CH---
Confidence               245677778899999998877777788888899999999999999999999999999987765321      33   


Q ss_pred             CccCchhHHHHHHHHHHHHHHHHHH
Q 011513          429 DLNKGRLDYFYYLVAALGLLNFGFF  453 (484)
Q Consensus       429 ~ln~~~~~~~f~~la~l~~~~~i~~  453 (484)
                             ...|+..+++.++..+..
T Consensus       170 -------~~~f~~~~~~~~i~~~~~  187 (413)
T PRK15403        170 -------KVLFAIIAVMGLIAFVGL  187 (413)
T ss_pred             -------HHHHHHHHHHHHHHHHHH
Confidence                   356666666666655443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=97.82  E-value=0.00046  Score=72.66  Aligned_cols=147  Identities=12%  Similarity=-0.031  Sum_probs=98.0

Q ss_pred             cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513          269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA  348 (484)
Q Consensus       269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  348 (484)
                      +++.+...+...+..|+.+.+    .+|+       ++.+-+.+++++.+++.+..+..-..                  
T Consensus        67 g~~~s~~~~~~~~~~~~~G~l----~Dr~-------g~r~~l~~~~~~~~~~~~~~~~~~~~------------------  117 (467)
T PRK09556         67 GMIGLGFSITYGVGKTLVGYY----ADGK-------NTKQFLPFLLILSAICMLGFGASLGS------------------  117 (467)
T ss_pred             HHHHHHHHHHHHHHHhhhhhH----hhcc-------CccchHHHHHHHHHHHHHHHHHHHhc------------------
Confidence            455566666667777777775    3443       23344667777766666655543210                  


Q ss_pred             CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCc
Q 011513          349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPE  428 (484)
Q Consensus       349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~  428 (484)
                       ...+.+.++...++.|++|....|.....+.+..|++.||..+|++....++|..+++.+.........   .++|   
T Consensus       118 -~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~---~~~~---  190 (467)
T PRK09556        118 -GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFF---DGHV---  190 (467)
T ss_pred             -ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhc---cCcc---
Confidence             113466677788999999999999999999999999999999999999999999999888755432100   0123   


Q ss_pred             CccCchhHHHHHHHHHHHHHHHHHHHHhhh
Q 011513          429 DLNKGRLDYFYYLVAALGLLNFGFFLLCAK  458 (484)
Q Consensus       429 ~ln~~~~~~~f~~la~l~~~~~i~~~~~~~  458 (484)
                             ...|...++++++..++.+++.+
T Consensus       191 -------~~~f~~~g~~~~~~~i~~~~~~~  213 (467)
T PRK09556        191 -------IGMFIFPSIIALIIGFIGLRYGS  213 (467)
T ss_pred             -------hhHHHHHHHHHHHHHHHHHHhCC
Confidence                   23455566666665555444433

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=97.81  E-value=0.00024  Score=74.64  Aligned_cols=140  Identities=14%  Similarity=0.113  Sum_probs=94.9

Q ss_pred             cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513          269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA  348 (484)
Q Consensus       269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  348 (484)
                      +.+.+...+.-++.+++.+++    .+|+++       .+-+.+++++.+++.+...+...                   
T Consensus        79 g~~~s~~~~~~~~~~~~~g~l----~dr~g~-------r~~l~~~~~~~~~~~~~~~~~~~-------------------  128 (465)
T TIGR00894        79 GLILSSHFYGQIIIQIPVGYL----AGKYVF-------KWSIGIGMFLSSVISIVIPWAAG-------------------  128 (465)
T ss_pred             hHHHHHHHHHHHHHHcchHHH----HHHhCc-------chhhHHHHHHHHHHHHHHHHHHH-------------------
Confidence            344555556666667766664    344432       23355666666666555433211                   


Q ss_pred             CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCc
Q 011513          349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPE  428 (484)
Q Consensus       349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~  428 (484)
                         .+.++++...+++|++|....|....++.+..|++.||.++|++.....+|..+++.+++.+.+..     .+|   
T Consensus       129 ---~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~-----~gw---  197 (465)
T TIGR00894       129 ---GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESW-----GGW---  197 (465)
T ss_pred             ---cCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----CCC---
Confidence               234567778899999999999999999999999999999999999999999999999988765321     135   


Q ss_pred             CccCchhHHHHHHHHHHHHHHHHHHHHh
Q 011513          429 DLNKGRLDYFYYLVAALGLLNFGFFLLC  456 (484)
Q Consensus       429 ~ln~~~~~~~f~~la~l~~~~~i~~~~~  456 (484)
                             ...|.+.++++++..+++...
T Consensus       198 -------~~~f~i~~~~~~~~~~~~~~~  218 (465)
T TIGR00894       198 -------PMIFYVFGIVGCAWSLLWFVF  218 (465)
T ss_pred             -------CeehhhhhHHHHHHHHHHHHH
Confidence                   234555566665555444433

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=97.81  E-value=0.0023  Score=65.81  Aligned_cols=133  Identities=16%  Similarity=0.062  Sum_probs=88.6

Q ss_pred             cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513          269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA  348 (484)
Q Consensus       269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  348 (484)
                      ++..+...+...+..|+.+.+    .+|+++       .+-+.++.++.+++.+.....                     
T Consensus        51 ~~~~~~~~~~~~~~~~~~G~l----~dr~g~-------r~~l~~~~~~~~~~~~~~~~~---------------------   98 (406)
T PRK15402         51 PTSMTAYLAGGMFLQWLLGPL----SDRIGR-------RPVMLAGVAFFILTCLAILLA---------------------   98 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHHhCC-------hHHHHHHHHHHHHHHHHHHHH---------------------
Confidence            344455556666666766664    344322       233556766666666655443                     


Q ss_pred             CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCc
Q 011513          349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPE  428 (484)
Q Consensus       349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~  428 (484)
                         .+.++++...++.|++..+..+.....+.+..|++.++..+++......+|..+++.+++.+.+..      +|   
T Consensus        99 ---~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~------~w---  166 (406)
T PRK15402         99 ---QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVL------PW---  166 (406)
T ss_pred             ---ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc------Cc---
Confidence               234456667788999998888899999999999999999999888877888888888877764321      34   


Q ss_pred             CccCchhHHHHHHHHHHHHHHHHH
Q 011513          429 DLNKGRLDYFYYLVAALGLLNFGF  452 (484)
Q Consensus       429 ~ln~~~~~~~f~~la~l~~~~~i~  452 (484)
                             ...|++.++++++..+.
T Consensus       167 -------~~~~~~~~~~~~~~~~~  183 (406)
T PRK15402        167 -------RGMFVLFAALAALSFFG  183 (406)
T ss_pred             -------cHHHHHHHHHHHHHHHH
Confidence                   23556666666555443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=97.80  E-value=0.0028  Score=64.63  Aligned_cols=112  Identities=9%  Similarity=0.010  Sum_probs=86.8

Q ss_pred             ccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCC
Q 011513          268 AASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRG  347 (484)
Q Consensus       268 ~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~  347 (484)
                      .++..+...+...+..|+.+++    .+|++       ..+.+.+|.++.+++++..++.                    
T Consensus        43 ~G~~~s~~~l~~~~~~~~~g~l----~dr~g-------~k~~~~~~~~~~~~~~~~~~~~--------------------   91 (381)
T PRK03633         43 VGVVSSSYFTGNLVGTLLAGYV----IKRIG-------FNRSYYLASLIFAAGCAGLGLM--------------------   91 (381)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHH----HHHHH-------HHHHHHHHHHHHHHHHHHHHHh--------------------
Confidence            3566777777777888877775    34433       2244677888888877766553                    


Q ss_pred             CCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513          348 AISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH  414 (484)
Q Consensus       348 ~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~  414 (484)
                          .+.++++...++.|++.....|.....+.+..|++.|+..+|.+.....+|..+|+.+++.+.
T Consensus        92 ----~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~  154 (381)
T PRK03633         92 ----VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVS  154 (381)
T ss_pred             ----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                235566778899999999998988888888999999999999999999999999999987764

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=97.76  E-value=0.0024  Score=64.31  Aligned_cols=111  Identities=12%  Similarity=0.112  Sum_probs=79.3

Q ss_pred             ccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCC
Q 011513          268 AASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRG  347 (484)
Q Consensus       268 ~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~  347 (484)
                      .+++.+...+..++..|+.+++    .+|++       ..+.+.+|.++.+++.+..++..                   
T Consensus        39 ~~~~~~~~~~~~~~~~~~~g~l----~dr~g-------~r~~~~~~~~~~~i~~~~~~~~~-------------------   88 (366)
T TIGR00886        39 LGNLVAVPVLAGAVLRIILGFL----VDKFG-------PRYTTTLSLLLLAIPCLWAGLAV-------------------   88 (366)
T ss_pred             hhHhhHHHHHHHHHHHHHHHHH----HHHhC-------chHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence            3566777777788888887775    34432       22346678888888877766542                   


Q ss_pred             CCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhh
Q 011513          348 AISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMV  413 (484)
Q Consensus       348 ~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~  413 (484)
                          .+.++++...++.|++.... +.....+.+..|++.|+..++++.....+|..+++.+++.+
T Consensus        89 ----~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l  149 (366)
T TIGR00886        89 ----QSYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPI  149 (366)
T ss_pred             ----hhHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence                03555666778889987654 45678999999999999999998877777777766665544

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=97.74  E-value=0.0025  Score=66.76  Aligned_cols=110  Identities=14%  Similarity=-0.001  Sum_probs=76.8

Q ss_pred             cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513          269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA  348 (484)
Q Consensus       269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  348 (484)
                      ++..+...+...+.+|+.+++    .+|++       ..+-+.+|.++.+++.+..++...                   
T Consensus        66 g~~~~~~~i~~~~~~~~~G~l----~Dr~g-------~k~~l~~~~~~~~i~~~~~~~~~~-------------------  115 (452)
T PRK11273         66 GFALSGISIAYGFSKFIMGSV----SDRSN-------PRVFLPAGLILAAAVMLFMGFVPW-------------------  115 (452)
T ss_pred             HHHHHHHHHHHHHHHhhhhhh----hhccC-------CchhHHHHHHHHHHHHHHHHhhhc-------------------
Confidence            444555666677777777775    34543       223466777777777776665421                   


Q ss_pred             CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHH-HHHH
Q 011513          349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYL-NGFL  409 (484)
Q Consensus       349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l-g~~l  409 (484)
                       ...+.++++...++.++++....|.....+.+..|++.|+..+|+++...++|..+ ++.+
T Consensus       116 -~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~  176 (452)
T PRK11273        116 -ATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLF  176 (452)
T ss_pred             -ccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence             01234455666788999998888877788889999999999999999988888754 4443

>PRK12382 putative transporter; Provisional

Probab=97.74  E-value=0.0016  Score=66.55  Aligned_cols=119  Identities=9%  Similarity=-0.027  Sum_probs=84.4

Q ss_pred             cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513          269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA  348 (484)
Q Consensus       269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  348 (484)
                      ++..+...+...+.+|+.+++.    +|+++       .+-+.+|.+..+++.+........      ..          
T Consensus        54 g~~~s~~~~~~~i~~~~~G~l~----Dr~g~-------r~~l~~~~~~~~~~~~~~~~~~~~------~~----------  106 (392)
T PRK12382         54 GIAVGIQFLATVLTRGYAGRLA----DQYGA-------KRSALQGMLACGLAGLAYLLAAIL------PV----------  106 (392)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHH----Hhhcc-------hHHHHHHHHHHHHHHHHHHhhhcc------cc----------
Confidence            5667777788888889888864    44432       233556666555544332221100      00          


Q ss_pred             CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513          349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH  414 (484)
Q Consensus       349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~  414 (484)
                      ....+.+++....++.|+|+....+...+.+.+..|++.|+..+|.+.....+|..+++.+++.+.
T Consensus       107 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~  172 (392)
T PRK12382        107 SAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLH  172 (392)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            002356667778899999999999999999999999999999999999888999999999987764

>TIGR00806 rfc RFC reduced folate carrier

Probab=97.74  E-value=0.0071  Score=62.89  Aligned_cols=83  Identities=8%  Similarity=0.066  Sum_probs=69.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCc
Q 011513          306 ILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPE  385 (484)
Q Consensus       306 ~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~  385 (484)
                      +.+-+.++++.-++..+..++.                        .+++.+....++.|++|.... ....++++..|+
T Consensus        91 ~K~vL~l~~l~Wsl~t~L~~fa------------------------~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~  145 (511)
T TIGR00806        91 YKPVLVLQALSFVCVWLLLLLG------------------------TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPP  145 (511)
T ss_pred             chHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCH
Confidence            3345667777777766666664                        246677788899999999999 999999999999


Q ss_pred             hhhhhHHhhHHHHHHHHHHHHHHHhHhh
Q 011513          386 NMRSIGGSLAFVGFAISNYLNGFLISMV  413 (484)
Q Consensus       386 ~~~g~~~gl~~l~~~iG~~lg~~l~~~~  413 (484)
                      +.|++++|++..+..+|..+++.+++++
T Consensus       146 kER~ratsi~~sg~~vG~~Ia~~L~qll  173 (511)
T TIGR00806       146 SRYQRAAAYSRAAVLLGVFLSSVLGQLL  173 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999884

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=97.73  E-value=0.0007  Score=70.36  Aligned_cols=110  Identities=15%  Similarity=0.078  Sum_probs=84.0

Q ss_pred             cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513          269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA  348 (484)
Q Consensus       269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  348 (484)
                      +++.++..+...+..|+.+++    .+|++       +.+-+.+|.++.+++.+...+...                   
T Consensus        74 ~~~~~~~~~~~~i~~~~~g~l----~d~~g-------rr~~~~~~~~~~~~~~~~~~~~~~-------------------  123 (481)
T TIGR00879        74 GLVVSIFLVGGFIGALFAGWL----SDRFG-------RKKSLLIIALLFVIGAILMGLAAF-------------------  123 (481)
T ss_pred             HHHHHHHHHHHHHHHHHhhHh----hhhhh-------hHHHHHHHHHHHHHHHHHHHHhcc-------------------
Confidence            556666677777888887775    34432       223466777777777766655321                   


Q ss_pred             CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHh
Q 011513          349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLI  410 (484)
Q Consensus       349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~  410 (484)
                        ..+.++++...++.|+|+....+....++.+..|++.|+..+|++.....+|..+++.++
T Consensus       124 --~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~  183 (481)
T TIGR00879       124 --ALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG  183 (481)
T ss_pred             --ccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence              123446667789999999999999999999999999999999999999999999999987

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.72  E-value=0.00051  Score=72.35  Aligned_cols=100  Identities=13%  Similarity=0.143  Sum_probs=80.6

Q ss_pred             hHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCcCccC
Q 011513          353 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNK  432 (484)
Q Consensus       353 s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~ln~  432 (484)
                      |.+.++...+++|+-|....|....+..+.-.++.||..+|+|+...++|+.+|+++...+.+..+..+..+|       
T Consensus       133 s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW-------  205 (495)
T KOG2533|consen  133 SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGW-------  205 (495)
T ss_pred             hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCc-------
Confidence            3445666779999999999999999999999999999999999999999999999998776543333333455       


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 011513          433 GRLDYFYYLVAALGLLNFGFFLLCAKWYKY  462 (484)
Q Consensus       433 ~~~~~~f~~la~l~~~~~i~~~~~~~~~~~  462 (484)
                         .+.|.+-|+++++..++..++.+.-..
T Consensus       206 ---~~~FiI~G~i~~~~gi~~f~~lp~~P~  232 (495)
T KOG2533|consen  206 ---RWLFIIEGVITLVLGIVVFFFLPDNPS  232 (495)
T ss_pred             ---eeehhHHHHHHHHHHheEEEEecCChh
Confidence               578899999998888776666655544

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=97.70  E-value=0.0014  Score=66.95  Aligned_cols=88  Identities=15%  Similarity=0.107  Sum_probs=67.9

Q ss_pred             hHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCcCccC
Q 011513          353 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNK  432 (484)
Q Consensus       353 s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~ln~  432 (484)
                      +.++++...++.|+||.. .+.....+.+..|++.|++.+|++.....+|..+++.++..+.+.      .+|       
T Consensus        78 ~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~------~gW-------  143 (368)
T TIGR00903        78 NYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTA------GGL-------  143 (368)
T ss_pred             cHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------cch-------
Confidence            567788889999999986 455666678899999999999999999999999999998887542      246       


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhh
Q 011513          433 GRLDYFYYLVAALGLLNFGFFLLCA  457 (484)
Q Consensus       433 ~~~~~~f~~la~l~~~~~i~~~~~~  457 (484)
                         ...|...++++++..++..+..
T Consensus       144 ---r~~f~~~~~l~~~~~~~~~~~l  165 (368)
T TIGR00903       144 ---QLLIIPIAAVAAAGIILVLAAL  165 (368)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHc
Confidence               3466666777766655544433

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=97.69  E-value=0.0021  Score=66.05  Aligned_cols=111  Identities=11%  Similarity=0.062  Sum_probs=86.5

Q ss_pred             ccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCC
Q 011513          268 AASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRG  347 (484)
Q Consensus       268 ~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~  347 (484)
                      .++..+.+.+...+.+|+.+++.    +|++       ..+-+..|+++.+++.+..++.+                   
T Consensus        46 ~g~~~s~~~~~~~l~~~~~g~l~----dr~G-------~r~~l~~~~~l~~~~~~~~~~a~-------------------   95 (393)
T PRK09705         46 AALLTALPVVTMGGLALAGSWLH----QHVS-------ERRSVAISLLLIAVGALMRELYP-------------------   95 (393)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHH----HHhC-------chHHHHHHHHHHHHHHHHHHHCc-------------------
Confidence            35667777778888888877753    4432       33457788999999988877652                   


Q ss_pred             CCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513          348 AISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH  414 (484)
Q Consensus       348 ~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~  414 (484)
                           +.++++...++.|+|+....+...+.+.+..| +.|+.++|++......|..+|+.+++.+.
T Consensus        96 -----~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~  156 (393)
T PRK09705         96 -----QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLV  156 (393)
T ss_pred             -----chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 24455667899999999999999999988887 67999999999988888888888887654

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.69  E-value=0.00047  Score=68.65  Aligned_cols=58  Identities=16%  Similarity=0.092  Sum_probs=52.1

Q ss_pred             HHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513          357 LIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH  414 (484)
Q Consensus       357 li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~  414 (484)
                      +.....+.++....+.+....++.+..|.+.||..+|+.....+++..+||++.+.+.
T Consensus       355 l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~  412 (451)
T KOG2615|consen  355 LYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIF  412 (451)
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeE
Confidence            3345678888999999999999999999999999999999999999999999997765

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=97.68  E-value=0.0014  Score=65.86  Aligned_cols=137  Identities=15%  Similarity=0.199  Sum_probs=92.8

Q ss_pred             ccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCC
Q 011513          268 AASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRG  347 (484)
Q Consensus       268 ~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~  347 (484)
                      .++..++..+...+..|+.+++.    +|+++|       +-+.+|.++.+++.+..++.+                   
T Consensus        40 ~g~~~s~~~~~~~~~~~~~G~l~----d~~G~r-------~~~~~~~~~~~~~~~~~~~~~-------------------   89 (377)
T TIGR00890        40 VAIWFTLLLIGLAMSMPVGGLLA----DKFGPR-------AVAMLGGILYGLGFTFYAIAD-------------------   89 (377)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHH----HHcCcc-------chhHHhHHHHHHHHHHHHHHH-------------------
Confidence            35667777778888888888763    454322       335677888888777666543                   


Q ss_pred             CCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCC
Q 011513          348 AISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLP  427 (484)
Q Consensus       348 ~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~  427 (484)
                           +.+.+....++.|+++....+.....+.+..|+ .|+.+++++....++|..+++.+.+.+.+.      .+|  
T Consensus        90 -----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------~~~--  155 (377)
T TIGR00890        90 -----SLAALYLTYGLASAGVGIAYGIALNTAVKWFPD-KRGLASGIIIGGYGLGSFILSPLITSVINL------EGV--  155 (377)
T ss_pred             -----HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc-ccHHHHHHHHHhcchhHhHHHHHHHHHHhc------ccH--
Confidence                 344555677799999988888888888777775 599999999999999988765555443211      123  


Q ss_pred             cCccCchhHHHHHHHHHHHHHHHHHHHHh
Q 011513          428 EDLNKGRLDYFYYLVAALGLLNFGFFLLC  456 (484)
Q Consensus       428 ~~ln~~~~~~~f~~la~l~~~~~i~~~~~  456 (484)
                              ...|...++++++..+...+.
T Consensus       156 --------~~~f~~~~~~~~~~~~~~~~~  176 (377)
T TIGR00890       156 --------PAAFIYMGIIFLLVIVLGAFL  176 (377)
T ss_pred             --------HHHHHHHHHHHHHHHHHHHHh
Confidence                    456666677666665544443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=97.68  E-value=0.0015  Score=64.82  Aligned_cols=112  Identities=16%  Similarity=0.201  Sum_probs=87.8

Q ss_pred             cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513          269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA  348 (484)
Q Consensus       269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  348 (484)
                      ++..+...+..++..|+.+++.    +|.++|       +-+.+|.++.+++.+.....                     
T Consensus        37 ~~~~~~~~~~~~~~~~~~g~~~----d~~g~r-------~~~~~~~~~~~~~~~~~~~~---------------------   84 (352)
T cd06174          37 GLIVSAFSLGYALGSLLAGYLS----DRFGRR-------RVLLLGLLLFALGSLLLAFA---------------------   84 (352)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHH----HHhCCc-------hhhHHHHHHHHHHHHHHHHh---------------------
Confidence            5566777777788888877753    443322       24667777777777766553                     


Q ss_pred             CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513          349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR  415 (484)
Q Consensus       349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~  415 (484)
                         .+.+++....++.+++..+..+....+..+..|++.|+..+|+.....++|..+++.+.+.+.+
T Consensus        85 ---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  148 (352)
T cd06174          85 ---SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE  148 (352)
T ss_pred             ---ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence               2345666788999999999999999999999999999999999999999999999999887754

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=97.68  E-value=0.0019  Score=61.93  Aligned_cols=309  Identities=13%  Similarity=0.146  Sum_probs=167.9

Q ss_pred             hhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchh
Q 011513           32 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGI  111 (484)
Q Consensus        32 ~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i  111 (484)
                      ...+....|++++++|.--.-..-+.+...+|+..+      +.-.|.++-...-+|+.+-..+.+++.++.+=  .|. 
T Consensus       134 ~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE------Ln~vfGlqlSvAR~GstvNf~lm~~ly~~~~~--~~~-  204 (459)
T KOG4686|consen  134 HAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE------LNFVFGLQLSVARLGSTVNFLLMPFLYDTMGR--MFP-  204 (459)
T ss_pred             HHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc------ccchhhHHHHHHHhhceeeeeecHHHHHHHHH--hcc-
Confidence            356778889999999988887778888888887532      57899999999999999888888888876542  121 


Q ss_pred             hhHHHHHHHHHHHhccceeeecCCCCCchhhHHHHHHHHHHhccccCCCCCccccccCCCccccCCCCCCCCcccccccc
Q 011513          112 PAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKA  191 (484)
Q Consensus       112 ~~~~~~l~~i~~l~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  191 (484)
                      ...-..+++.+. +..+.-             .+-+..+........  +.+..++.++                     
T Consensus       205 ~~ghT~LG~~l~-~~~~tc-------------~~slical~lg~~D~--rAerilh~e~---------------------  247 (459)
T KOG4686|consen  205 GVGHTLLGLWLC-FEVKTC-------------KQSLICALSLGLSDD--RAERILHLEE---------------------  247 (459)
T ss_pred             cchHHHHHHHHH-HHHHHH-------------HHHHHHHHHhhhhhh--HHHHHHhhhc---------------------
Confidence            111111222111 110000             000011110000000  0000000000                     


Q ss_pred             cccCCccccccCCCCCCCcccCcchhHHHHHHhHhhHHHHHHHHHHHHHHhchhhHHHHHHHhcCCCCCCcccccccccc
Q 011513          192 AIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASY  271 (484)
Q Consensus       192 ~i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~~~~~~~~g~~g~~i~~~~~  271 (484)
                            .   ..|.         +.+.+|++..-  .|+|...++..+.|--....+..-.+-...++|     +++..-
T Consensus       248 ------g---~~Ge---------~pkLtdv~~f~--ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfG-----lS~~~a  302 (459)
T KOG4686|consen  248 ------G---FLGE---------EPKLTDVNTFY--PPFWVLVIICVLYYVAWFPFITLGPMFFQKRFG-----LSAVSA  302 (459)
T ss_pred             ------C---cccC---------CcccccccccC--ccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhC-----CChhhc
Confidence                  0   0000         00113333321  344444444333332222222111111111233     444444


Q ss_pred             chhhHHH---HHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513          272 AIFSMLG---LTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA  348 (484)
Q Consensus       272 ~~~n~~~---iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  348 (484)
                      .++|+..   ..+++|+.+.++    +|++++      ...+..+.+....+=....+..                    
T Consensus       303 ~~i~s~vy~Isav~spvfg~i~----Dk~G~n------~~wv~~a~~~tl~~H~~l~Ft~--------------------  352 (459)
T KOG4686|consen  303 GNILSTVYGISAVLSPVFGAIS----DKYGFN------LWWVASACILTLLGHSGLFFTF--------------------  352 (459)
T ss_pred             cchhhhhhhhhhhhhhhHHHhH----hhhcce------ehhHHHHHHHHHHHhhhHHhhh--------------------
Confidence            4555543   456678888764    444322      2334444444444433333321                    


Q ss_pred             CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCc
Q 011513          349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPE  428 (484)
Q Consensus       349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~  428 (484)
                         .++ |  ..+.++|++.-+..-..+..+....|++.-|+.-|.....+++|-.+.+.+.+++.+..+     ++   
T Consensus       353 ---lsP-y--~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g-----~y---  418 (459)
T KOG4686|consen  353 ---LSP-Y--TSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG-----SY---  418 (459)
T ss_pred             ---ccH-H--HHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCC-----ch---
Confidence               222 2  245778888888888889999999999999999999999999999999999999876432     21   


Q ss_pred             CccCchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 011513          429 DLNKGRLDYFYYLVAALGLLNFGFFLLCAKW  459 (484)
Q Consensus       429 ~ln~~~~~~~f~~la~l~~~~~i~~~~~~~~  459 (484)
                       .   .++.||...+.+++....+.+.+-|+
T Consensus       419 -~---~le~ffl~~~~~aL~svgil~~~N~k  445 (459)
T KOG4686|consen  419 -D---NLEAFFLIIGLMALTSVGILFYLNKK  445 (459)
T ss_pred             -h---hHHHHHHHHHHHHHHHHHHHhheecc
Confidence             1   25778887777777776655554433

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=97.67  E-value=0.0051  Score=68.21  Aligned_cols=111  Identities=13%  Similarity=0.108  Sum_probs=83.5

Q ss_pred             cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513          269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA  348 (484)
Q Consensus       269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  348 (484)
                      +++.++..+..++..++.+++    ..|++       ..+.+.+++++.+++.++.++.                     
T Consensus       205 g~l~s~~~lG~iiG~li~G~L----sDR~G-------RR~~lii~lil~~i~~ll~afa---------------------  252 (742)
T TIGR01299       205 GMLGLIVYLGMMVGAFFWGGL----ADKLG-------RKQCLLICLSVNGFFAFFSSFV---------------------  252 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHHhC-------cHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence            456667777777877777775    34433       2234566666666666555443                     


Q ss_pred             CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513          349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH  414 (484)
Q Consensus       349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~  414 (484)
                         .+.++++...++.|+|.....|....++.+..|++.||..++++.....+|..+++.++..+.
T Consensus       253 ---~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il  315 (742)
T TIGR01299       253 ---QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAII  315 (742)
T ss_pred             ---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               235566778899999999999999999999999999999999999999999999888765543

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=97.67  E-value=0.0017  Score=68.55  Aligned_cols=143  Identities=10%  Similarity=0.056  Sum_probs=98.0

Q ss_pred             cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513          269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA  348 (484)
Q Consensus       269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  348 (484)
                      ++..+...+...+..++.+++.    +|.      ....+-+.+|.++.+++++..++..                    
T Consensus        51 g~~~~~~~~~~~~~~~~~G~la----Dr~------~G~~~~l~~~~~~~~~g~~~~~~~~--------------------  100 (475)
T TIGR00924        51 FIIFGAYSALVYLLTSVGWWFG----DRV------WGTKKTMVLGGIVLMLGHFMLAMSI--------------------  100 (475)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHH----Hhh------cchHHHHHHHHHHHHHHHHHHHhcc--------------------
Confidence            4445555556666666666643    331      1223347778888888877665531                    


Q ss_pred             CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchh---hhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCC
Q 011513          349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENM---RSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDW  425 (484)
Q Consensus       349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~---~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w  425 (484)
                          +.+++....++.++|+.+..|....++.++.|++.   |+...++++...++|..+|+.+++.+.+..      +|
T Consensus       101 ----~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~------g~  170 (475)
T TIGR00924       101 ----YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENY------GY  170 (475)
T ss_pred             ----cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhc------Ch
Confidence                23345556778999999999999999999988754   888999999999999999999998875321      23


Q ss_pred             CCcCccCchhHHHHHHHHHHHHHHHHHHHHhhhccc
Q 011513          426 LPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYK  461 (484)
Q Consensus       426 ~~~~ln~~~~~~~f~~la~l~~~~~i~~~~~~~~~~  461 (484)
                                ...|.+.++..+++.+++....+.++
T Consensus       171 ----------~~~f~~~~~~~~~~~l~~~~~~~~~~  196 (475)
T TIGR00924       171 ----------HVGFNLAAVGMVIGLLTFFAGRHMLR  196 (475)
T ss_pred             ----------HHHHHHHHHHHHHHHHHHHHcccccc
Confidence                      45666666666666666666655554

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.66  E-value=0.0081  Score=64.52  Aligned_cols=90  Identities=14%  Similarity=0.142  Sum_probs=58.2

Q ss_pred             CCchhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeeccccccc
Q 011513           29 PTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWG  108 (484)
Q Consensus        29 ~~~~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~  108 (484)
                      .+..+...+..|..+.++|.|... .....++|..+.+   .   |..++.+..+..-+...+++.++..+..+.+|||.
T Consensus       126 atA~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k---~---R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~  198 (599)
T PF06609_consen  126 ATAQNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNK---W---RGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWI  198 (599)
T ss_pred             hcCCcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccc---h---hhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchH
Confidence            445567789999999999988765 4566688988752   2   12233333333223333455555445556799999


Q ss_pred             chhhhHHHHHHHHHHHh
Q 011513          109 LGIPAFMMFLSCAMFFL  125 (484)
Q Consensus       109 F~i~~~~~~l~~i~~l~  125 (484)
                      |++..+...++++...+
T Consensus       199 ~~~~~i~~~i~~vl~~~  215 (599)
T PF06609_consen  199 FYIFIIWSGIALVLIFF  215 (599)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999888887765433

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=97.66  E-value=0.004  Score=63.71  Aligned_cols=112  Identities=13%  Similarity=0.135  Sum_probs=81.0

Q ss_pred             cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513          269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA  348 (484)
Q Consensus       269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  348 (484)
                      ++..+...+..++..|+.+.+.    +|++       ..+-+.+|.++.+++.+.....                     
T Consensus        46 ~~~~~~~~~~~~~~~~~~G~l~----Dr~g-------rr~~~~~~~~~~~~~~~~~~~~---------------------   93 (394)
T PRK11652         46 QAVMAAYLLTYGLSQLFYGPLS----DRVG-------RRPVILVGMSIFILGTLVALFA---------------------   93 (394)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHH----HhcC-------ChHHHHHHHHHHHHHHHHHHHH---------------------
Confidence            4555666667777777777653    4432       2233556777766666554432                     


Q ss_pred             CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513          349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR  415 (484)
Q Consensus       349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~  415 (484)
                         .+.++++...++.|++.....+...++..+..|++.++..++.+.....+|..+++.+++.+.+
T Consensus        94 ---~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~  157 (394)
T PRK11652         94 ---HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTT  157 (394)
T ss_pred             ---ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence               2345666677889999888888888899999999999999999999999999999988877653

>PRK03893 putative sialic acid transporter; Provisional

Probab=97.65  E-value=0.0047  Score=65.26  Aligned_cols=111  Identities=16%  Similarity=0.166  Sum_probs=83.5

Q ss_pred             cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513          269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA  348 (484)
Q Consensus       269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  348 (484)
                      +++.+...+..++..++.+++    .+|++       ..+-+.++.++.+++.+..++.                     
T Consensus        58 ~~~~~~~~~~~~~~~~~~g~l----~dr~g-------~r~~~~~~~~~~~~~~~~~~~~---------------------  105 (496)
T PRK03893         58 ASLISAAFISRWFGGLLLGAM----GDRYG-------RRLAMVISIVLFSVGTLACGFA---------------------  105 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHHhC-------cHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence            445555566666666776665    34432       2233566777777777666553                     


Q ss_pred             CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513          349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH  414 (484)
Q Consensus       349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~  414 (484)
                         .+.+++....++.|++.....+....++.+..|++.|+..+|++....++|..+++.+.+.+.
T Consensus       106 ---~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  168 (496)
T PRK03893        106 ---PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVV  168 (496)
T ss_pred             ---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence               234566677899999999999999999999999999999999999999999999999988765

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=97.64  E-value=0.0019  Score=66.11  Aligned_cols=120  Identities=13%  Similarity=-0.010  Sum_probs=86.9

Q ss_pred             ccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCC
Q 011513          268 AASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRG  347 (484)
Q Consensus       268 ~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~  347 (484)
                      .++..+...+...+++|+.+++.    +|++       ..+-+.++.++.+++.+...+....       +.        
T Consensus        53 ~g~~~~~~~~~~~i~~~~~G~l~----Dr~g-------~r~~l~~~~~~~~~~~~~~~~~~~~-------~~--------  106 (399)
T PRK05122         53 AGLVISLQYLATLLSRPHAGRYA----DTLG-------PKKAVVFGLCGCALSGLLYLLAGLL-------AA--------  106 (399)
T ss_pred             HHHHHHHHHHHHHHhchhhHhHH----hccC-------CcchHHHHHHHHHHHHHHHHHhhhh-------hc--------
Confidence            35667777788888888888863    4433       2233566666666655544433210       00        


Q ss_pred             CCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513          348 AISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH  414 (484)
Q Consensus       348 ~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~  414 (484)
                       ....+.++++...++.|+|+....+.....+.+..|++.|+..+|+......+|..+|+.+++.+.
T Consensus       107 -~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~  172 (399)
T PRK05122        107 -WPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLY  172 (399)
T ss_pred             -cchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHH
Confidence             011355667778899999999999999999999999999999999988888899999998887764

>PRK11010 ampG muropeptide transporter; Validated

Probab=97.60  E-value=0.0028  Score=67.22  Aligned_cols=107  Identities=20%  Similarity=0.298  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhh
Q 011513          310 MAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRS  389 (484)
Q Consensus       310 i~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g  389 (484)
                      +.++.++.+++....++.+.                     ..+.+|+...+++.+++.....+...+++.+..|++.|+
T Consensus        84 ll~~~i~~~~~~~~~a~~~~---------------------~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg  142 (491)
T PRK11010         84 LLATQLLLLVAIAAMGFLEP---------------------GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERG  142 (491)
T ss_pred             HHHHHHHHHHHHHHHHHcCC---------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhH
Confidence            55666666666666655421                     234667777788888888889999999999999999999


Q ss_pred             hHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCcCccCchhHHHHHHHHHHHHHHHHH
Q 011513          390 IGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGF  452 (484)
Q Consensus       390 ~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~i~  452 (484)
                      ...|+......+|..+++.+...+.+..     .+|          ...|++.++++++..+.
T Consensus       143 ~~~~i~~~g~~lG~llg~~l~~~l~~~~-----~GW----------r~~f~i~a~l~ll~~l~  190 (491)
T PRK11010        143 AGAAISVLGYRLAMLVSGGLALWLADRY-----LGW----------QGMYWLMAALLIPCIIA  190 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cCH----------HHHHHHHHHHHHHHHHH
Confidence            9999999999999999988887765310     134          34566666666655443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=97.60  E-value=0.0022  Score=66.31  Aligned_cols=118  Identities=9%  Similarity=-0.025  Sum_probs=84.2

Q ss_pred             ccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCC
Q 011513          268 AASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRG  347 (484)
Q Consensus       268 ~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~  347 (484)
                      .++..+...+..++..|+.+++.    +|+++|       +-+.++.++.+++++..++....                 
T Consensus        54 ~g~~~~~~~l~~~~~~~~~G~l~----dr~g~~-------~~l~~~~~~~~~~~~~~~~~~~~-----------------  105 (417)
T PRK10489         54 VGLSVTLTGGAMFIGLMVGGVLA----DRYDRK-------KLILLARGTCGLGFIGLALNAFL-----------------  105 (417)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHh----hhcCCc-------eEEEehHHHHHHHHHHHHHHHHc-----------------
Confidence            36667777788888888877753    443221       22445666666666554432110                 


Q ss_pred             CCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513          348 AISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR  415 (484)
Q Consensus       348 ~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~  415 (484)
                        ...+.+++....++.+++..+..+...+.+.+..|++.++..++++....++|..+|+.+++.+.+
T Consensus       106 --~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~  171 (417)
T PRK10489        106 --PEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIA  171 (417)
T ss_pred             --CCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH
Confidence              012455666677888999988889999999999999999999999999999999999999887653

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.59  E-value=0.00086  Score=73.36  Aligned_cols=137  Identities=9%  Similarity=-0.059  Sum_probs=92.5

Q ss_pred             ccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHh--hhhh---cc-----
Q 011513          268 AASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKR--RSLA---LS-----  337 (484)
Q Consensus       268 ~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~--~~~~---~~-----  337 (484)
                      .+++.+.+.+.-.+..+++..+    -.|       ....+-+++|+++.+++.++.++.+...  +...   ..     
T Consensus        70 ~G~i~s~~~i~~~~~~i~v~~~----~~r-------~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~  138 (633)
T TIGR00805        70 SGLINGSYEIGNLLLIIFVSYF----GTK-------LHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLS  138 (633)
T ss_pred             ceeeeehhhHHHHHHHHHHHHh----hcc-------cCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccccccc
Confidence            3566777777777777766654    233       2234558889999999998887764211  0000   00     


Q ss_pred             --CCCcccc-------------cCCCCc--cchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHH
Q 011513          338 --RPVGLEQ-------------RRGAIS--SLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFA  400 (484)
Q Consensus       338 --~g~~~~~-------------~~~~~~--~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~  400 (484)
                        +...|..             ++....  ......++..-++.|+|+....+.+..++.+..|++.|+.++|+++....
T Consensus       139 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~  218 (633)
T TIGR00805       139 SANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAV  218 (633)
T ss_pred             ccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHH
Confidence              0000100             000001  11334455678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhHhhcc
Q 011513          401 ISNYLNGFLISMVHR  415 (484)
Q Consensus       401 iG~~lg~~l~~~~~~  415 (484)
                      +|..+|+.+++.+..
T Consensus       219 iG~~lG~llgg~l~~  233 (633)
T TIGR00805       219 FGPAFGYLLGSFCLQ  233 (633)
T ss_pred             hhhHHHHHHHHHHHh
Confidence            999999999887653

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=97.59  E-value=0.0019  Score=66.38  Aligned_cols=109  Identities=12%  Similarity=0.075  Sum_probs=82.5

Q ss_pred             ccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCC
Q 011513          268 AASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRG  347 (484)
Q Consensus       268 ~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~  347 (484)
                      .++..+...+...++.|+.+++    .+|+++|       +-+.++.++.+++.+..++..                   
T Consensus        40 ~~~~~~~~~l~~~l~~~~~G~l----aDr~grr-------~vl~~~~~~~~~~~~~~~~~~-------------------   89 (393)
T PRK11195         40 QPLLQMFFVLAYIVLAPFVGAF----ADSFPKG-------RVMFIANGIKLLGCLLMLFGI-------------------   89 (393)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHh----hhccCCc-------hhhHHHHHHHHHHHHHHHHHH-------------------
Confidence            3566777778888888988876    4454322       335566666655554433321                   


Q ss_pred             CCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513          348 AISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH  414 (484)
Q Consensus       348 ~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~  414 (484)
                           +.   +..++++|+++.+..|...+.+.+..|++.|+.++|++.....+|..+|+.+++++.
T Consensus        90 -----~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~  148 (393)
T PRK11195         90 -----HP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALA  148 (393)
T ss_pred             -----HH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 11   335678999999999999999999999999999999999999999999999998875

>TIGR00897 2A0118 polyol permease family

Probab=97.57  E-value=0.0067  Score=62.43  Aligned_cols=116  Identities=11%  Similarity=0.028  Sum_probs=80.0

Q ss_pred             ccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCC
Q 011513          268 AASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRG  347 (484)
Q Consensus       268 ~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~  347 (484)
                      .++..+...+...+..|+.+++    .+|+       ...+-+..|.++.+++.+.......                  
T Consensus        50 ~g~~~~~~~~~~~i~~~~~g~l----~dr~-------g~k~~l~~~~~~~~~~~~~~~~~~~------------------  100 (402)
T TIGR00897        50 SASAFTLYGIAAAISAWISGVV----AEII-------GPLKTMMIGLLLWCVGHAAFIVFGL------------------  100 (402)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH----HHHc-------CcHHHHHHHHHHHHHHHHHHHHHhc------------------
Confidence            3555667777778888887775    3443       2233466777777776554322211                  


Q ss_pred             CCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHH-HHHHHHhHhhc
Q 011513          348 AISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISN-YLNGFLISMVH  414 (484)
Q Consensus       348 ~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~-~lg~~l~~~~~  414 (484)
                        ...+.+.+...+++.|+|.....+.....+.+..|++.|+..+|++....++|. .+++.+++...
T Consensus       101 --~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~  166 (402)
T TIGR00897       101 --GHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAI  166 (402)
T ss_pred             --cCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence              012344455677888999888888888888899999999999999999999996 57887776554

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=97.56  E-value=0.016  Score=58.55  Aligned_cols=66  Identities=9%  Similarity=0.041  Sum_probs=53.7

Q ss_pred             CchhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeee
Q 011513           30 TPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQS  101 (484)
Q Consensus        30 ~~~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~  101 (484)
                      ......+|..++++++.|.|..+...++++++.-++++.      .+-.++--...-+|+.++|.+++++..
T Consensus       100 ~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a------~~rlnl~q~fn~lGa~~gp~~g~~lil  165 (422)
T COG0738         100 SSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESA------AFRLNLAQAFNGLGAILGPLLGSSLIL  165 (422)
T ss_pred             hhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhH------HHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            345678899999999999999999999999999887432      234455556778999999999988766

>PRK11043 putative transporter; Provisional

Probab=97.55  E-value=0.0072  Score=61.99  Aligned_cols=112  Identities=10%  Similarity=0.026  Sum_probs=80.1

Q ss_pred             cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513          269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA  348 (484)
Q Consensus       269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  348 (484)
                      ++..++..+...+..++.+++    .+|+++       .+-+.+|.++.+++.+..++.                     
T Consensus        44 g~~~s~~~~~~~~~~~~~g~l----~dr~g~-------r~~~~~~~~~~~~~~~~~~~~---------------------   91 (401)
T PRK11043         44 SASLSLFLAGFALGQLLWGPL----SDRYGR-------KPVLLAGLSLFALGSLGMLWV---------------------   91 (401)
T ss_pred             HHHHHHHHHHHHHHHHhhhhH----HhhcCC-------cHHHHHHHHHHHHHHHHHHHh---------------------
Confidence            455666666667777777665    344332       234566776776666655443                     


Q ss_pred             CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513          349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR  415 (484)
Q Consensus       349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~  415 (484)
                         .+.++++...++.|+|.....+...+.+.+..|++.++...+..+...++|..+++.+++.+.+
T Consensus        92 ---~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~  155 (401)
T PRK11043         92 ---ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLN  155 (401)
T ss_pred             ---cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence               2355666677888998888888888899999999999989888888888888899888877653

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=97.52  E-value=0.0033  Score=66.71  Aligned_cols=86  Identities=12%  Similarity=0.177  Sum_probs=67.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCch
Q 011513          307 LQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPEN  386 (484)
Q Consensus       307 ~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~  386 (484)
                      .+-+.+|.++.+++.+.+++...                     ...  .+....+++++|+.+..|...+++.++.|++
T Consensus        81 r~~~~~g~~~~~~g~~~~~~~~~---------------------~~~--ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~  137 (489)
T PRK10207         81 KRTIVLGAIVLAIGYFMTGMSLL---------------------KPD--LIFIALGTIAVGNGLFKANPASLLSKCYPPK  137 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcc---------------------chh--HHHHHHHHHHhccccccCCHHHHHHHhcCCC
Confidence            35578888888888877765321                     011  1334667889999999999999999999887


Q ss_pred             --hhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513          387 --MRSIGGSLAFVGFAISNYLNGFLISMVHR  415 (484)
Q Consensus       387 --~~g~~~gl~~l~~~iG~~lg~~l~~~~~~  415 (484)
                        .|+...+++++..++|..+|+.+++++.+
T Consensus       138 ~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~  168 (489)
T PRK10207        138 DPRLDGAFTLFYMSINIGSLISLSLAPVIAD  168 (489)
T ss_pred             chhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence              45778999999999999999999988754

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=97.48  E-value=0.0046  Score=64.92  Aligned_cols=136  Identities=18%  Similarity=0.128  Sum_probs=87.8

Q ss_pred             cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513          269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA  348 (484)
Q Consensus       269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  348 (484)
                      ++..++..+...+..|+.+++    .+|+++       .+-+.+|+++.+++.+..++..                    
T Consensus        57 ~~~~s~~~~~~~~~~~~~G~l----~dr~g~-------r~~l~~~~~~~~~~~~~~~~~~--------------------  105 (455)
T TIGR00892        57 AWISSIMLAVLYAGGPISSIL----VNRFGC-------RPVVIAGGLLASLGMILASFSS--------------------  105 (455)
T ss_pred             HHHHHHHHHHHHHhhHHHHHH----HHHcCc-------hHHHHhhHHHHHHHHHHHHHhh--------------------
Confidence            445555555566667776664    445432       2345667777777766655532                    


Q ss_pred             CccchHHHHHH-HHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCC
Q 011513          349 ISSLSGLWLIP-QLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLP  427 (484)
Q Consensus       349 ~~~~s~~~li~-~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~  427 (484)
                          +.+.+.. ..++.|+++....+.....+.+..| +.|+..+|++.....+|..+++.+++.+.+..      +|  
T Consensus       106 ----~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~------gw--  172 (455)
T TIGR00892       106 ----NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESF------GW--  172 (455)
T ss_pred             ----hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHh------Ch--
Confidence                1222322 3367788888766666777777776 78999999999999999999988887765422      24  


Q ss_pred             cCccCchhHHHHHHHHHHHHHHHHHHHHh
Q 011513          428 EDLNKGRLDYFYYLVAALGLLNFGFFLLC  456 (484)
Q Consensus       428 ~~ln~~~~~~~f~~la~l~~~~~i~~~~~  456 (484)
                              ...|++.++++++..+..+++
T Consensus       173 --------r~~f~~~~~~~~~~~v~~~~~  193 (455)
T TIGR00892       173 --------RGSFLILGGLLLHCCVCGALM  193 (455)
T ss_pred             --------HHHHHHHHHHHHHHHHHHHHh
Confidence                    456777777766665544433

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=97.47  E-value=0.0048  Score=65.66  Aligned_cols=117  Identities=9%  Similarity=0.164  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchh
Q 011513          308 QRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENM  387 (484)
Q Consensus       308 ~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~  387 (484)
                      +-+.+|.++.+++....++..                       .+.+++....++.++|..+..|....++.++.|++.
T Consensus        89 ~~~~~g~~~~~ig~~l~~~~~-----------------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~  145 (500)
T PRK09584         89 RVIMLGAIVLAIGYALVAWSG-----------------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDD  145 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc-----------------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCc
Confidence            446778888887766655431                       112234456678899999888988899999987643


Q ss_pred             --hhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCcCccCchhHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 011513          388 --RSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYK  463 (484)
Q Consensus       388 --~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~i~~~~~~~~~~~~  463 (484)
                        ++..+++++...++|..+|+.+++.+.+..      +|          ...|.+.++..++..+.+++..+.+++.
T Consensus       146 ~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~------g~----------~~~F~i~~i~~~i~~i~~~~~~~~~~~~  207 (500)
T PRK09584        146 PRLDGAFTMYYMSINIGSFFSMLATPWLAAKY------GW----------SVAFALSVVGMLITVVNFAFCQRWVKQY  207 (500)
T ss_pred             hhhhhcchHHHHHHHHHHHHHHHHHHHHHHhh------CH----------HHHHHHHHHHHHHHHHHHHHhHHHhccC
Confidence              445788889999999999999998875421      23          4566666666666666666665555443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=97.45  E-value=0.017  Score=58.66  Aligned_cols=87  Identities=16%  Similarity=0.246  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchh
Q 011513          308 QRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENM  387 (484)
Q Consensus       308 ~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~  387 (484)
                      +-+.+|+++..+..+...+.+.                     +... |..  -++.++.-.-+...+=++..+.+|++.
T Consensus       319 ~vl~~~lvi~~~~~~~~~~~~~---------------------~~~f-~i~--gll~g~s~G~~qA~SRSy~~~lvp~~k  374 (438)
T COG2270         319 PVLMIGLVILSIAALYLIFLEG---------------------ELDF-WIL--GLLVGTSLGGAQASSRSYLARLVPKGK  374 (438)
T ss_pred             eeehHHHHHHHHHHHHHHHccc---------------------cHHH-HHH--HHHHHHhcchHHHHHHHHHHHhCCCcc
Confidence            4566777766666555544432                     2232 322  255666666677778899999999999


Q ss_pred             hhhHHhhHHHHHHHHHHHHHHHhHhhccccc
Q 011513          388 RSIGGSLAFVGFAISNYLNGFLISMVHRFTK  418 (484)
Q Consensus       388 ~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~  418 (484)
                      .+...|++.++.-.++.+||.+.+++.+.|+
T Consensus       375 ~~~fFglyaltgra~S~~gp~lv~v~t~iTg  405 (438)
T COG2270         375 EGRFFGLYALTGRAASFLGPFLVAVITQITG  405 (438)
T ss_pred             ccceeehhhhhhhHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999988773

>PRK10133 L-fucose transporter; Provisional

Probab=97.43  E-value=0.017  Score=60.39  Aligned_cols=113  Identities=12%  Similarity=-0.005  Sum_probs=83.6

Q ss_pred             cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513          269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA  348 (484)
Q Consensus       269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  348 (484)
                      +++.+...+...+.+|+.+++    .+|++       ..+-+.+|+++.+++.+.......                   
T Consensus        64 gl~~~~~~~g~~i~~~~~g~l----~dr~G-------~r~~l~~g~~~~~~~~~l~~~~~~-------------------  113 (438)
T PRK10133         64 GLIQSAFYFGYFIIPIPAGIL----MKKLS-------YKAGIITGLFLYALGAALFWPAAE-------------------  113 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHHhC-------cHHHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence            455666677777878877765    45543       334577788888887766432111                   


Q ss_pred             CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhh
Q 011513          349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMV  413 (484)
Q Consensus       349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~  413 (484)
                        ..+.+++....++.|+|.....+....++.+..|++.++..++++....++|..+|+.++..+
T Consensus       114 --a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l  176 (438)
T PRK10133        114 --IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL  176 (438)
T ss_pred             --cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              134556777889999999999999999999988888887789998998999999998887654

>TIGR00898 2A0119 cation transport protein

Probab=97.43  E-value=0.0016  Score=69.17  Aligned_cols=132  Identities=14%  Similarity=0.196  Sum_probs=95.2

Q ss_pred             cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513          269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA  348 (484)
Q Consensus       269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  348 (484)
                      ++.+++..+..++..++.+.+    .+|+++       .+-+.++.++.+++.+..++.                     
T Consensus       130 ~~~~s~~~~g~~~g~~~~g~l----~Dr~Gr-------r~~~~~~~~~~~i~~~~~~~~---------------------  177 (505)
T TIGR00898       130 DLTQSCFFVGVLLGSFVFGYL----SDRFGR-------KKVLLLSTLVTAVSGVLTAFS---------------------  177 (505)
T ss_pred             HHHHHHHHHHHHHHHHhHHHh----hhhccc-------hHHHHHHHHHHHHHHHHHHHc---------------------
Confidence            566777777788888887775    344332       123556666666666555442                     


Q ss_pred             CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCc
Q 011513          349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPE  428 (484)
Q Consensus       349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~  428 (484)
                         .+.++++...++.|++.....+....++.+..|++.|+..++++....++|..+++.++..+.         +|   
T Consensus       178 ---~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~---------~w---  242 (505)
T TIGR00898       178 ---PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP---------DW---  242 (505)
T ss_pred             ---ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh---------HH---
Confidence               245667778899999999999999999999999999999999999999999999888876543         24   


Q ss_pred             CccCchhHHHHHHHHHHHHHHHHHHH
Q 011513          429 DLNKGRLDYFYYLVAALGLLNFGFFL  454 (484)
Q Consensus       429 ~ln~~~~~~~f~~la~l~~~~~i~~~  454 (484)
                             ...|++.++.+++..+.++
T Consensus       243 -------r~~~~~~~i~~~~~~~~~~  261 (505)
T TIGR00898       243 -------RWLQLAVSLPTFLFFLLSW  261 (505)
T ss_pred             -------HHHHHHHHHHHHHHHHHHH
Confidence                   3456666666655555443

>TIGR00901 2A0125 AmpG-related permease

Probab=97.41  E-value=0.0062  Score=61.31  Aligned_cols=63  Identities=21%  Similarity=0.192  Sum_probs=54.1

Q ss_pred             hHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513          353 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR  415 (484)
Q Consensus       353 s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~  415 (484)
                      +.+++...+++.+++-....+...+++.+..|++.|+...|+.....++|..+++.++..+..
T Consensus        82 ~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~  144 (356)
T TIGR00901        82 DLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLAS  144 (356)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            455566667778888888899999999999999999999999999999999999998877653

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=97.39  E-value=0.0032  Score=66.93  Aligned_cols=116  Identities=9%  Similarity=0.003  Sum_probs=82.6

Q ss_pred             ccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCC
Q 011513          270 SYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAI  349 (484)
Q Consensus       270 ~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  349 (484)
                      ++.+...+..++..++..++    .+|+++       .+-+.+++++.+++.++.++...         .         .
T Consensus        60 ~~~~~~~ig~~ig~~~~g~l----~d~~Gr-------r~~~~~~~~~~~v~~~~~~~~~~---------~---------~  110 (502)
T TIGR00887        60 AVNGSASIGTLAGQLFFGWL----ADKLGR-------KRVYGMELIIMIIATVASGLSPG---------S---------S  110 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHhhcc-------HHHHHHHHHHHHHHHHHHHHccC---------c---------c
Confidence            45555566666777766665    344322       22355666666666655544311         0         0


Q ss_pred             ccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513          350 SSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH  414 (484)
Q Consensus       350 ~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~  414 (484)
                      ...+.++++...++.|+++....+....++.+..|++.||..++++.....+|..+++.+...+.
T Consensus       111 ~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~  175 (502)
T TIGR00887       111 PKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVL  175 (502)
T ss_pred             cchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11235567788899999999999999999999999999999999999999999999988876543

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.38  E-value=0.0079  Score=62.97  Aligned_cols=87  Identities=11%  Similarity=0.177  Sum_probs=65.4

Q ss_pred             hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhh--eeeeecccccccch
Q 011513           33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVI--VYVQSDVSWAWGLG  110 (484)
Q Consensus        33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~--~~l~~~~g~~~~F~  110 (484)
                      ..-++.+|+.+.|+..|.......-++.+.-|++- |+     ..=...-.++++|.+++..++  ..+++.-.|.+.+.
T Consensus       115 ~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~-RG-----~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~  188 (485)
T KOG0569|consen  115 SFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNL-RG-----ALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLA  188 (485)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhh-cc-----HHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHH
Confidence            45679999999999999999999999999988643 22     222334478888888885554  44556677999999


Q ss_pred             hhhHHHHHHHHHHHh
Q 011513          111 IPAFMMFLSCAMFFL  125 (484)
Q Consensus       111 i~~~~~~l~~i~~l~  125 (484)
                      .+.+..++.++...+
T Consensus       189 ~~~i~~~~~l~~l~~  203 (485)
T KOG0569|consen  189 FPLIPALLQLALLPF  203 (485)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            888877777766543

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=97.36  E-value=0.0038  Score=65.64  Aligned_cols=123  Identities=11%  Similarity=0.024  Sum_probs=84.1

Q ss_pred             cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513          269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA  348 (484)
Q Consensus       269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  348 (484)
                      ++..+...+..++.+++.+++    .+|+++       .+-+.++.++.+++.+..++.+......  ..          
T Consensus        58 ~~~~s~~~ig~~~~~~~~G~l----~dr~Gr-------r~~~~~~~~l~~i~~~~~~~~~~~~~~~--~~----------  114 (479)
T PRK10077         58 GFCVASALIGCIIGGALGGYC----SNRFGR-------RDSLKIAAVLFFISALGSAWPEFGFTSI--GP----------  114 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHHhcc-------HHHHHHHHHHHHHHHHHHHhhccccccc--cc----------
Confidence            455566667777777877775    344432       2346667777766666655432100000  00          


Q ss_pred             CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513          349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH  414 (484)
Q Consensus       349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~  414 (484)
                      .+...+++++...++.|++.....|....++.+..|++.||.++|++.....+|..+++.+.....
T Consensus       115 ~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~  180 (479)
T PRK10077        115 DNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIA  180 (479)
T ss_pred             cchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            011234456677799999999999999999999999999999999999999999998877765543

>TIGR00899 2A0120 sugar efflux transporter

Probab=97.35  E-value=0.0091  Score=60.24  Aligned_cols=140  Identities=8%  Similarity=-0.107  Sum_probs=85.0

Q ss_pred             cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHH-HHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCC
Q 011513          269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMA-IGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRG  347 (484)
Q Consensus       269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~-iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~  347 (484)
                      +++.+...+..++..|+.+++.    +|++       ..+.+. .+.++.+++.+..+..                    
T Consensus        36 g~~~~~~~~~~~~~~~~~g~l~----Dr~g-------~r~~~~~~~~~~~~~~~~~~~~~--------------------   84 (375)
T TIGR00899        36 GLFYTGSAIVGIAVSQLLATRS----DYQG-------DRKGLILFCCLLAALACLLFAWN--------------------   84 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----hccC-------CchHHHHHHHHHHHHHHHHHHhc--------------------
Confidence            4556666667777788877753    3432       223333 3445544444444332                    


Q ss_pred             CCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhH--HhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCC
Q 011513          348 AISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIG--GSLAFVGFAISNYLNGFLISMVHRFTKGASTGDW  425 (484)
Q Consensus       348 ~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~--~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w  425 (484)
                          .+.++++...++.+.++....|...+...+..|++.|+..  .+......++|..+|+.+++.+.+..      +|
T Consensus        85 ----~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~------~~  154 (375)
T TIGR00899        85 ----RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGF------GF  154 (375)
T ss_pred             ----chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhc------cc
Confidence                2344444455667777777788888888888888777643  57777778889999988887764311      23


Q ss_pred             CCcCccCchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 011513          426 LPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKW  459 (484)
Q Consensus       426 ~~~~ln~~~~~~~f~~la~l~~~~~i~~~~~~~~  459 (484)
                                ...|++.+.+.++..++..+..+.
T Consensus       155 ----------~~~f~~~~~~~~~~~~~~~~~~~~  178 (375)
T TIGR00899       155 ----------TVMFLTAALAFVLCGVLVWLFLPS  178 (375)
T ss_pred             ----------HHHHHHHHHHHHHHHHHHHHhCCC
Confidence                      345666666666555554444443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PTZ00207 hypothetical protein; Provisional

Probab=97.34  E-value=0.016  Score=62.52  Aligned_cols=119  Identities=8%  Similarity=0.071  Sum_probs=85.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCc
Q 011513          306 ILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPE  385 (484)
Q Consensus       306 ~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~  385 (484)
                      +.+-+.+|.++.+++++..++...         +         ....+++.+....++.|+|+....+.....+.+..| 
T Consensus        90 ~R~vllig~ll~~iG~ll~ala~~---------~---------~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-  150 (591)
T PTZ00207         90 PRPIFVLSMTVFCLGTLLFALTFQ---------E---------VIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-  150 (591)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhc---------c---------cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-
Confidence            445577899999999988877421         0         012356667778899999999999988888888887 


Q ss_pred             hhhhhHHhhHHHHHHHHHHH-HHHHhHhhcccccCCCCCCCCCcCccCchhHHHHHHHHHHHHHHHHHHHHhhhccc
Q 011513          386 NMRSIGGSLAFVGFAISNYL-NGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYK  461 (484)
Q Consensus       386 ~~~g~~~gl~~l~~~iG~~l-g~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~i~~~~~~~~~~  461 (484)
                      +.||.++|++....++|..+ +++...++..        +          ...+|++++++.++..++.+.+.+..+
T Consensus       151 ~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~--------~----------~~~~fl~l~vl~~vv~ll~~~~vr~p~  209 (591)
T PTZ00207        151 SNRGAVVAIMKTFTGLGSAILGSIQLAFFSD--------N----------TSAYFFFLMSFALVVGILAIVFMRLPP  209 (591)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------h----------HHHHHHHHHHHHHHHHHHHHhheeCCc
Confidence            67899999999999999976 4444444321        1          235677778877777766666555544

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=97.27  E-value=0.011  Score=69.30  Aligned_cols=115  Identities=10%  Similarity=-0.056  Sum_probs=82.4

Q ss_pred             cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513          269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA  348 (484)
Q Consensus       269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  348 (484)
                      ++..++..+..+++.|+.+++    .+|++       ..+-+.++.++.+++.+...+...                   
T Consensus        50 ~~~~~~~~l~~~l~~~~~G~l----~Dr~g-------rk~~l~~~~~~~~~~~~~~~~~~~-------------------   99 (1146)
T PRK08633         50 AIVNALFLLPFLLLSSPAGFL----ADKFS-------KNRVIRIVKLFEVGLTLLIVLAYY-------------------   99 (1146)
T ss_pred             HHHHHHHHHHHHHHhhhHhhh----ccccc-------HHHHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence            455556666677777777775    34432       122344455544444444333211                   


Q ss_pred             CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513          349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR  415 (484)
Q Consensus       349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~  415 (484)
                        ..+.++++...++.|++..+..|...+++.+..|++.|+.++|+.....++|..+|+.+++++..
T Consensus       100 --~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~  164 (1146)
T PRK08633        100 --LGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFE  164 (1146)
T ss_pred             --HccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence              12356677788999999999999999999999999999999999999999999999999888754

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=97.24  E-value=0.011  Score=69.40  Aligned_cols=63  Identities=16%  Similarity=0.077  Sum_probs=58.8

Q ss_pred             hHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513          353 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR  415 (484)
Q Consensus       353 s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~  415 (484)
                      +.++++...+++|+++.+..|...+.+.+..|++.++.++|+.....++|..+|+.+++++..
T Consensus       107 s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~  169 (1140)
T PRK06814        107 SVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATI  169 (1140)
T ss_pred             hHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            567788888999999999999999999999999999999999999999999999999998764

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=97.21  E-value=0.025  Score=59.80  Aligned_cols=139  Identities=15%  Similarity=0.120  Sum_probs=81.0

Q ss_pred             chhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCcc
Q 011513          272 AIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISS  351 (484)
Q Consensus       272 ~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  351 (484)
                      .+...+..++..++.+++    .+|++       ..+.+.+|.++.+++.+..++..                       
T Consensus        77 ~~~~~~~~~~~~~~~G~l----~dr~G-------~r~~~~~~~~~~~~~~~~~~~~~-----------------------  122 (476)
T PLN00028         77 GIASVSGSIFSRLAMGPV----CDLYG-------PRYGSAFLLMLTAPAVFCMSLVS-----------------------  122 (476)
T ss_pred             HHHHHHHHHHHHHHHHHH----HHHhC-------ChHHHHHHHHHHHHHHHHHHHhc-----------------------
Confidence            334444445555665554    34543       12345567777776666555431                       


Q ss_pred             chHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhccccc---CCCCCCCCCc
Q 011513          352 LSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTK---GASTGDWLPE  428 (484)
Q Consensus       352 ~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~---~~~~~~w~~~  428 (484)
                       +.+.+....++.|+++.... .....+.+..|++.||..+|+++....+|..+++.+.+.+...-.   ..+..+|   
T Consensus       123 -s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gW---  197 (476)
T PLN00028        123 -SATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAW---  197 (476)
T ss_pred             -CHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhh---
Confidence             23344456788899987544 345678899999999999999987777777776665544422100   0000123   


Q ss_pred             CccCchhHHHHHHHHHHHHHHHHHHHHh
Q 011513          429 DLNKGRLDYFYYLVAALGLLNFGFFLLC  456 (484)
Q Consensus       429 ~ln~~~~~~~f~~la~l~~~~~i~~~~~  456 (484)
                             ...|++.++++++..++..++
T Consensus       198 -------r~~f~i~g~l~l~~~l~~~~~  218 (476)
T PLN00028        198 -------RIAFFVPGLLHIIMGILVLTL  218 (476)
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHH
Confidence                   346666777766655544433

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=97.15  E-value=0.015  Score=59.77  Aligned_cols=84  Identities=12%  Similarity=0.095  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhh
Q 011513          310 MAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRS  389 (484)
Q Consensus       310 i~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g  389 (484)
                      +.++.++.++++...++.+.                     ..+.+++...+++.+.......|...+++.+..|++.|+
T Consensus        71 l~~~~~~~~l~~~~l~~~~~---------------------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~  129 (402)
T PRK11902         71 LLLTQVGLAASIAAMAFCPP---------------------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERG  129 (402)
T ss_pred             HHHHHHHHHHHHHHHHhcCc---------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhh
Confidence            56667777777766555321                     134555666667788888899999999999999999999


Q ss_pred             hHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513          390 IGGSLAFVGFAISNYLNGFLISMVH  414 (484)
Q Consensus       390 ~~~gl~~l~~~iG~~lg~~l~~~~~  414 (484)
                      .+.++.....++|..+++.+...+.
T Consensus       130 ~~~~~~~~g~~~g~i~g~~l~~~l~  154 (402)
T PRK11902        130 AGAAVKVLGYRLAMLVSGGLALWLA  154 (402)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            9999999989999999988877664

>TIGR00806 rfc RFC reduced folate carrier

Probab=97.15  E-value=0.074  Score=55.54  Aligned_cols=84  Identities=7%  Similarity=-0.016  Sum_probs=66.9

Q ss_pred             hhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccch-
Q 011513           32 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLG-  110 (484)
Q Consensus        32 ~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~-  110 (484)
                      .+...+.+.+++.|+++|..- .....+..++|++   |   |.++.+++-.+.++|.++++++++++. ++||+.-+- 
T Consensus       113 ~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~k---E---R~ratsi~~sg~~vG~~Ia~~L~qll~-s~gWr~y~~L  184 (511)
T TIGR00806       113 TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPS---R---YQRAAAYSRAAVLLGVFLSSVLGQLLV-TLGWISYSTL  184 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHH---H---HHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCchhHHHH
Confidence            357789999999999999999 9999999999963   2   467888889999999999999999954 578875443 


Q ss_pred             --hhhHHHHHHHHHH
Q 011513          111 --IPAFMMFLSCAMF  123 (484)
Q Consensus       111 --i~~~~~~l~~i~~  123 (484)
                        |+...+.+++++-
T Consensus       185 n~Isl~s~~~a~~~a  199 (511)
T TIGR00806       185 NIISLVFMTFSVFLA  199 (511)
T ss_pred             HHHHHHHHHHHHHHH
Confidence              5555555555543

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=97.09  E-value=0.075  Score=56.72  Aligned_cols=83  Identities=12%  Similarity=0.031  Sum_probs=69.1

Q ss_pred             chhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccch
Q 011513           31 PWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLG  110 (484)
Q Consensus        31 ~~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~  110 (484)
                      ..+...+.+.+++.|++.++...+...+++|.+.++.      |..+-++ +.....|+.+++.+++++..  +|++.++
T Consensus       168 a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~  238 (521)
T KOG0255|consen  168 APNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFW  238 (521)
T ss_pred             hCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHH
Confidence            4567889999999999999999999999999998642      3456666 78888888999999888877  8999999


Q ss_pred             hhhHHHHHHHHH
Q 011513          111 IPAFMMFLSCAM  122 (484)
Q Consensus       111 i~~~~~~l~~i~  122 (484)
                      +..+..++.++.
T Consensus       239 ~~~~~~~~~~~~  250 (521)
T KOG0255|consen  239 IISIPSGLFLLL  250 (521)
T ss_pred             HHHHHHHHHHHH
Confidence            888777776655

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.07  E-value=0.0046  Score=64.71  Aligned_cols=84  Identities=8%  Similarity=0.102  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhh
Q 011513          309 RMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMR  388 (484)
Q Consensus       309 ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~  388 (484)
                      -+.+|++.-.+++.+.++....                         |+.....+....-.++.|...+++.++++++.+
T Consensus       310 ~i~lGl~~~~~~~~~~af~~~~-------------------------w~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~  364 (463)
T KOG2816|consen  310 LISLGLLSEFLQLLLFAFATET-------------------------WMMFAAGVVVALAGIVFPAIRAFASILVSPEEQ  364 (463)
T ss_pred             HhhHHHHHHHHHHHHHHHhccc-------------------------hhhhHHHHHHHhhcchhHHHHhHHHhhcccccc
Confidence            4678999999999998886431                         554455666667778899999999999999999


Q ss_pred             hhHHhhHHHHHHHHHHHHHHHhHhhcccc
Q 011513          389 SIGGSLAFVGFAISNYLNGFLISMVHRFT  417 (484)
Q Consensus       389 g~~~gl~~l~~~iG~~lg~~l~~~~~~~~  417 (484)
                      |..+++.....++.+.+++.+-+.+...+
T Consensus       365 g~v~~~is~i~~l~~~~~~~~~~~i~~~t  393 (463)
T KOG2816|consen  365 GKVFGIISGIEGLSGVVSPALYGNIFALT  393 (463)
T ss_pred             cchhhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            99999999999999999999988876655

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=97.07  E-value=0.00055  Score=58.05  Aligned_cols=86  Identities=12%  Similarity=0.078  Sum_probs=71.6

Q ss_pred             hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhh
Q 011513           33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP  112 (484)
Q Consensus        33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~  112 (484)
                      +...+++...+.+++.+...|...+...|.+++++      +.+..++.+...++|..+++.+.+++.+..+|++.|.+.
T Consensus        50 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  123 (141)
T TIGR00880        50 NITVLIIARFLQGFGAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFL  123 (141)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHH
Confidence            35567778889999999999999999999998642      356888899999999999999999998888999999888


Q ss_pred             hHHHHHHHHHHH
Q 011513          113 AFMMFLSCAMFF  124 (484)
Q Consensus       113 ~~~~~l~~i~~l  124 (484)
                      ++..+++.+...
T Consensus       124 ~~~~~~~~~~~~  135 (141)
T TIGR00880       124 AILALAAFILLA  135 (141)
T ss_pred             HHHHHHHHHHHh
Confidence            877777665544

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=97.01  E-value=0.038  Score=57.48  Aligned_cols=91  Identities=12%  Similarity=0.162  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchh
Q 011513          308 QRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENM  387 (484)
Q Consensus       308 ~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~  387 (484)
                      +-+.+++++.+++.+..++...+-     .           ....+..+++...+++|+|+....|....++.+..|++.
T Consensus        94 ~~l~~~~~~~~~~~~~~~~~~~~~-----~-----------~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~  157 (432)
T PRK10406         94 KSMLISVCMMCFGSLVIACLPGYE-----T-----------IGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR  157 (432)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCch-----h-----------HHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc
Confidence            446778888877777766543210     0           001234567778899999999999999999999999999


Q ss_pred             hhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513          388 RSIGGSLAFVGFAISNYLNGFLISMVH  414 (484)
Q Consensus       388 ~g~~~gl~~l~~~iG~~lg~~l~~~~~  414 (484)
                      ||.+++++......|..+++.+...+.
T Consensus       158 rg~~~~~~~~~~~~G~~~~~~~~~~~~  184 (432)
T PRK10406        158 KGFYASFQYVTLIGGQLLALLVVVVLQ  184 (432)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999998888888888877655443

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.00  E-value=0.014  Score=61.35  Aligned_cols=116  Identities=15%  Similarity=0.196  Sum_probs=90.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCc
Q 011513          306 ILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPE  385 (484)
Q Consensus       306 ~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~  385 (484)
                      ..+.+..+.++.+++-+...+...                      .+.+.++...+++|++|....|.......+-+|+
T Consensus       102 ~r~v~~~~~~~sa~~t~l~P~aa~----------------------~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~  159 (466)
T KOG2532|consen  102 ARRVFFISGLISALLTLLTPLAAS----------------------IGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPP  159 (466)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHH----------------------hcchhhHHHHHHhHHHHhHHHhhhhceeeeECCH
Confidence            445678888888887777766543                      3344567788999999999999999999999999


Q ss_pred             hhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCcCccCchhHHHHHHHHHHHHHHHHHHHHhhh
Q 011513          386 NMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAK  458 (484)
Q Consensus       386 ~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~i~~~~~~~  458 (484)
                      ..|++..++......+|..++-.+++.+-+..     .+|          ..-|.+.|+++++-.+++..+.+
T Consensus       160 ~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~-----~GW----------~sifY~~g~~g~i~~~~w~~~~~  217 (466)
T KOG2532|consen  160 NERSTFIAILTAGSQLGTIITMPVSGLLCESS-----LGW----------PSIFYVFGIVGLIWFILWFLFYS  217 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHhccC-----CCC----------chHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999887877765431     367          34566677777777776665544

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=96.95  E-value=0.01  Score=61.50  Aligned_cols=121  Identities=14%  Similarity=0.080  Sum_probs=78.2

Q ss_pred             cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513          269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA  348 (484)
Q Consensus       269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  348 (484)
                      +.+.++..+.-.+..|+.+.+.+..-+|.++|      ..-+.+|.++.+++++.......        ..         
T Consensus        38 g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grr------r~~i~~~~~~~~i~~~~~~~~~~--------~~---------   94 (437)
T TIGR00792        38 GTLFLVARILDAITDPIMGNIVDRTRTRWGKF------RPWLLIGAIPFSIVLVLLFTTPD--------FS---------   94 (437)
T ss_pred             HHHHHHHHHHHHhccchheEeeecCCCCCCCc------chhHHHhHHHHHHHHHHHHhCCC--------CC---------
Confidence            44555556666777777777644222121111      11256677777777666544311        00         


Q ss_pred             CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhccc-CchhhhhHHhhHHHHHHHHHHHHHHHhHhh
Q 011513          349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQF-PENMRSIGGSLAFVGFAISNYLNGFLISMV  413 (484)
Q Consensus       349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~a-P~~~~g~~~gl~~l~~~iG~~lg~~l~~~~  413 (484)
                       .....+|....+++.+++..+..+...+...+.. |++.|+...+.......+|..+++.+...+
T Consensus        95 -~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l  159 (437)
T TIGR00792        95 -ATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPL  159 (437)
T ss_pred             -cchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             1133667778888889988888888788888876 578899999998888888888877665444

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00896 CynX cyanate transporter

Probab=96.93  E-value=0.027  Score=56.64  Aligned_cols=110  Identities=15%  Similarity=0.190  Sum_probs=78.5

Q ss_pred             ccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCC
Q 011513          268 AASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRG  347 (484)
Q Consensus       268 ~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~  347 (484)
                      .++..+++.+...+..|+.+++    .+|+++       .+.+.+|.++.+++.+.. ..                    
T Consensus        37 ~g~~~s~~~~~~~~~~~~~g~l----~dr~g~-------r~~~~~~~~~~~~~~~~~-~~--------------------   84 (355)
T TIGR00896        37 AGLLTALPVLCFAVLAPLAPWL----ARRFGE-------ERSVAAGLLLIAAGILIR-SA--------------------   84 (355)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHH----HHHhCc-------hHHHHHHHHHHHHHHHHH-Hh--------------------
Confidence            3566778888888888888875    345432       234666776666655443 11                    


Q ss_pred             CCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513          348 AISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH  414 (484)
Q Consensus       348 ~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~  414 (484)
                          .+.++++...++.++|..+..+.....+.+..| +.|+..+|++....++|..+++.+++.+.
T Consensus        85 ----~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~  146 (355)
T TIGR00896        85 ----PGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLA  146 (355)
T ss_pred             ----ccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                123455566788999998888777778888776 57999999999999999999988877654

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=96.92  E-value=0.012  Score=62.44  Aligned_cols=90  Identities=17%  Similarity=0.155  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchh
Q 011513          308 QRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENM  387 (484)
Q Consensus       308 ~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~  387 (484)
                      +-+.+++++.+++.+..++...+-.     -|           ...+++++...++.|+|+....+....++.+..|++.
T Consensus        88 ~~l~~~~~l~~i~~~~~a~~~~~~~-----~g-----------~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~  151 (490)
T PRK10642         88 KILAITIVIMSISTFCIGLIPSYAT-----IG-----------IWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK  151 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccHHH-----HH-----------HHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC
Confidence            4577888888888888777543100     00           1122346778899999999999999999999999999


Q ss_pred             hhhHHhhHHHHHHHHHHHHHHHhHhh
Q 011513          388 RSIGGSLAFVGFAISNYLNGFLISMV  413 (484)
Q Consensus       388 ~g~~~gl~~l~~~iG~~lg~~l~~~~  413 (484)
                      ||.+++++.....+|..+|+.+...+
T Consensus       152 Rg~~~~~~~~~~~~G~~lg~~~~~~~  177 (490)
T PRK10642        152 RGFMGSWLDFGSIAGFVLGAGVVVLI  177 (490)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999888888888887766544

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=96.91  E-value=0.022  Score=60.76  Aligned_cols=118  Identities=15%  Similarity=0.166  Sum_probs=86.0

Q ss_pred             ccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCC
Q 011513          268 AASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRG  347 (484)
Q Consensus       268 ~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~  347 (484)
                      .+.++....+-.+++.|+.+.+.    +|+.+|       +-+..+-++.++..+..++...        .         
T Consensus        47 valv~~a~~LP~~Llsl~aG~la----Dr~drr-------rili~~~~~~~~~~~~L~~l~~--------~---------   98 (524)
T PF05977_consen   47 VALVQAASTLPILLLSLFAGALA----DRFDRR-------RILILSQLLRALVALLLAVLAF--------F---------   98 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh----hcccch-------HHHHHHHHHHHHHHHHHHHHHH--------h---------
Confidence            46677888888889988888764    343221       2233444444444444333322        1         


Q ss_pred             CCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513          348 AISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR  415 (484)
Q Consensus       348 ~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~  415 (484)
                        ...++|.++...++.|++..+..|.-.+.+-+++|++.-....++.....+++..+||.+++.+..
T Consensus        99 --~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva  164 (524)
T PF05977_consen   99 --GLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVA  164 (524)
T ss_pred             --CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence              136677777777999999999999999999999999999999999999999999999999887653

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=96.89  E-value=0.047  Score=57.77  Aligned_cols=115  Identities=14%  Similarity=0.163  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCch-
Q 011513          308 QRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPEN-  386 (484)
Q Consensus       308 ~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~-  386 (484)
                      +-+.+|.++.+++.++.+..+                       .+..++.....+..+|..+..+...+++.++.|++ 
T Consensus        77 r~iliG~il~~lg~lll~~~~-----------------------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~  133 (493)
T PRK15462         77 MAVMLGALLMAIGHVVLGASE-----------------------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTD  133 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHhh-----------------------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCC
Confidence            346788888888776544321                       01111222334455666666677778889988875 


Q ss_pred             -hhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCcCccCchhHHHHHHHHHHHHHHHHHHHHhhhccc
Q 011513          387 -MRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYK  461 (484)
Q Consensus       387 -~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~i~~~~~~~~~~  461 (484)
                       .|+...++.+...++|..+++.+.+.+.+..      +|          ...|.+.++.++++.+.+++..|++.
T Consensus       134 ~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~------Gw----------~~~F~iaaigm~l~li~~~~~~~~l~  193 (493)
T PRK15462        134 PRRDGGFSLMYAAGNVGSIIAPIACGYAQEEY------SW----------AMGFGLAAVGMIAGLVIFLCGNRHFT  193 (493)
T ss_pred             ccccceehHHHHHHHHHHHHHHHHHHHHHhhh------Ch----------HHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence             7888999999999999999999998875321      23          34566656555666666655444443

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=96.81  E-value=0.24  Score=52.83  Aligned_cols=84  Identities=13%  Similarity=0.182  Sum_probs=63.3

Q ss_pred             hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeec-ccccccchh
Q 011513           33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSD-VSWAWGLGI  111 (484)
Q Consensus        33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~-~g~~~~F~i  111 (484)
                      +...+++|+++.++|.|+..-.+.-+++|.-|.+.      |...-+.+.+++++|.+++..+....++. ++|+..+++
T Consensus       141 ~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~------RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~  214 (513)
T KOG0254|consen  141 SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHI------RGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGL  214 (513)
T ss_pred             hHHHHHHHHHHhccchhhhhhcchhhHhhcCChhh------hHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHH
Confidence            67899999999999999999888888888876532      34566778899999999996665555543 589977776


Q ss_pred             hhHHHHHHHHH
Q 011513          112 PAFMMFLSCAM  122 (484)
Q Consensus       112 ~~~~~~l~~i~  122 (484)
                      ..+.-++..+.
T Consensus       215 ~~i~~~~~~~~  225 (513)
T KOG0254|consen  215 ALIPAVILALG  225 (513)
T ss_pred             HHHHHHHHHHH
Confidence            66555544444

>TIGR00883 2A0106 metabolite-proton symporter

Probab=96.81  E-value=0.016  Score=58.41  Aligned_cols=91  Identities=15%  Similarity=0.230  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchh
Q 011513          308 QRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENM  387 (484)
Q Consensus       308 ~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~  387 (484)
                      +-+.+|.++.+++.+..++....-       .         ......++++...++.|++.....+....++.+..|++.
T Consensus        66 ~~l~~~~~~~~~~~~~~~~~~~~~-------~---------~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~  129 (394)
T TIGR00883        66 KTLVITLLMMGIGTLLIGLLPSYA-------T---------IGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK  129 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCChh-------h---------hHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc
Confidence            346677887777777666543210       0         001122345667789999999999999999999999999


Q ss_pred             hhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513          388 RSIGGSLAFVGFAISNYLNGFLISMVH  414 (484)
Q Consensus       388 ~g~~~gl~~l~~~iG~~lg~~l~~~~~  414 (484)
                      |+.+++.+.....+|..+++.+...+.
T Consensus       130 r~~~~~~~~~~~~~G~~i~~~~~~~~~  156 (394)
T TIGR00883       130 RGFYGSFQQVGAPVGLLLAALTVLLLS  156 (394)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999988876654

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.79  E-value=0.74  Score=48.04  Aligned_cols=162  Identities=12%  Similarity=0.070  Sum_probs=90.9

Q ss_pred             cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513          269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA  348 (484)
Q Consensus       269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  348 (484)
                      -.+..++.+.+-+..-+.+-.+-++-||.++    +....-+.+|.++.-++++..... .     ..+......++...
T Consensus       278 ~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~----fg~~~~~~~~~~~~~~~~~li~l~-~-----p~dap~~~t~~~~~  347 (461)
T KOG3098|consen  278 TYLIAIYSIGIGLGEVIGGLDFSILSKRIRG----FGRKPTVLIGIIIHLIGFLLIHLS-F-----PNDAPLRPTDSPPL  347 (461)
T ss_pred             hhHHHHHHHHHhHHHHHHHHHHHHHhhhhhh----cccCcchhHHHHHHHHHHHHHhcc-c-----cccCCCCCCccccc
Confidence            3445566666655555544444444444432    223333566666665555543221 1     00100000011111


Q ss_pred             CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCc
Q 011513          349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPE  428 (484)
Q Consensus       349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~  428 (484)
                      .-.-+.......+++.|+|+......-+.++.... ++-|..+-++.-+..++++.++.......               
T Consensus       348 ~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~~---------------  411 (461)
T KOG3098|consen  348 LFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPYL---------------  411 (461)
T ss_pred             ccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhhh---------------
Confidence            11122223334568999999999999999999999 55566788888888888887654443221               


Q ss_pred             CccCchhHHHHHHHHHHHHHHHHHHHHhhhccc
Q 011513          429 DLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYK  461 (484)
Q Consensus       429 ~ln~~~~~~~f~~la~l~~~~~i~~~~~~~~~~  461 (484)
                           ....+.....+++.+...++..++++.+
T Consensus       412 -----~l~~~~l~~~i~~~i~~~~~~~~~~~~~  439 (461)
T KOG3098|consen  412 -----LLYIYTLGLPIFCVIATTIFFIVAERTQ  439 (461)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 1223455666777777888888887774

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=96.69  E-value=0.04  Score=57.55  Aligned_cols=157  Identities=15%  Similarity=0.097  Sum_probs=90.0

Q ss_pred             ccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCC
Q 011513          268 AASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRG  347 (484)
Q Consensus       268 ~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~  347 (484)
                      -++..+..++.-.+..|+++++     +.  |+   .+..+=+.+|.+++++|-+++..++..                 
T Consensus        73 fG~viaa~slg~~i~~liF~~W-----s~--k~---~~~k~Pli~s~ii~~~g~llY~~l~~~-----------------  125 (488)
T KOG2325|consen   73 FGLVIAASSLGHAIFSLIFGIW-----SN--KT---GSVKKPLIVSFLIAIIGNLLYLALAYV-----------------  125 (488)
T ss_pred             hhHHHHHHHHHHHhcchhhccc-----cc--cc---CCcccCHHHHHHHHHHHHHHHHHHHhc-----------------
Confidence            3566777888899999988873     33  11   122222778999999999998776652                 


Q ss_pred             CCccchHHHHHHHHHHHHhH-HHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCC
Q 011513          348 AISSLSGLWLIPQLSLIGFS-EAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWL  426 (484)
Q Consensus       348 ~~~~~s~~~li~~~~l~~ig-E~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~  426 (484)
                        ..-+.|++...+++.|+| -.+..--.+.-..+-.+.+.|+  ++.......+|..+||.+...+....  ..+-.|+
T Consensus       126 --~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA--~a~~~~~~vlg~ilGp~~q~~f~~Lg--~~G~~i~  199 (488)
T KOG2325|consen  126 --PNGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRA--FAATSGGFVLGIILGPTIQLAFTPLG--EKGFMIL  199 (488)
T ss_pred             --ccchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHH--HHHhhhHHHHHHHHhHHHHHHHhhhc--CCceEEc
Confidence              112678888999999999 4444444343333345555554  44444555555555555554443221  1112344


Q ss_pred             C-cCccCchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 011513          427 P-EDLNKGRLDYFYYLVAALGLLNFGFFLLCAKW  459 (484)
Q Consensus       427 ~-~~ln~~~~~~~f~~la~l~~~~~i~~~~~~~~  459 (484)
                      + -.+|.....  =|+.+++.++..++..+..|-
T Consensus       200 ~~~~~n~YTap--~w~m~i~~i~~~v~i~~~f~E  231 (488)
T KOG2325|consen  200 PGLIFNMYTAP--AWLMAILWIIYIVIILFFFKE  231 (488)
T ss_pred             CcceEEecchH--HHHHHHHHHHHHHHHHhheee
Confidence            4 345543222  234555666665555544433

>PRK15011 sugar efflux transporter B; Provisional

Probab=96.59  E-value=0.21  Score=51.14  Aligned_cols=89  Identities=8%  Similarity=-0.102  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhh--hhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCcCcc
Q 011513          354 GLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMR--SIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLN  431 (484)
Q Consensus       354 ~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~--g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~ln  431 (484)
                      .+++.....+.+..+....|...+.+.+..|++-|  +.+.+......++|..+|+.+++.+.+..      +|      
T Consensus       105 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~------gw------  172 (393)
T PRK15011        105 YFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGF------SF------  172 (393)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc------Ch------
Confidence            33433333444444556778888888877766544  45668888888999999999998875321      34      


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHhhh
Q 011513          432 KGRLDYFYYLVAALGLLNFGFFLLCAK  458 (484)
Q Consensus       432 ~~~~~~~f~~la~l~~~~~i~~~~~~~  458 (484)
                          ...|++.++++++..+...+..|
T Consensus       173 ----~~~f~~~~~~~~~~~~~~~~~~~  195 (393)
T PRK15011        173 ----TVMYLSAAVAFIVCGVMVWLFLP  195 (393)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHhhcC
Confidence                34666667666666555444333

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.59  E-value=0.021  Score=62.28  Aligned_cols=172  Identities=10%  Similarity=0.024  Sum_probs=104.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHH----hhhhhc-----cCC-----------Cc--ccc---cCC--CCccchHH-HH
Q 011513          306 ILQRMAIGMILAIFTMIISGIIEDK----RRSLAL-----SRP-----------VG--LEQ---RRG--AISSLSGL-WL  357 (484)
Q Consensus       306 ~~~ki~iG~~l~~i~~~~~~~~~~~----~~~~~~-----~~g-----------~~--~~~---~~~--~~~~~s~~-~l  357 (484)
                      .++-+++|+++++++.++.++.+..    +++...     +..           .+  +..   +..  ......+| .+
T Consensus       161 rPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llf  240 (735)
T KOG3626|consen  161 RPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLF  240 (735)
T ss_pred             ccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHH
Confidence            4567999999999999998876432    111111     000           00  000   010  11222233 34


Q ss_pred             HHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCcCccCchhHH
Q 011513          358 IPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDY  437 (484)
Q Consensus       358 i~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~  437 (484)
                      +..-++.|+|+--..+.|.+++.+.+-++...+|.|+.+....+|-++|-+++++..+.-.--+ .+-..-+.+|.+---
T Consensus       241 f~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~-~~~~~it~~DPrWIG  319 (735)
T KOG3626|consen  241 FLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFG-LSPIGITPTDPRWIG  319 (735)
T ss_pred             HHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccc-cCCCCCCCCCcchhh
Confidence            5566999999999999999999999999999999999999888887777777766543210000 000111122222212


Q ss_pred             ----HHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccccccccC
Q 011513          438 ----FYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAPEVAMEKLN  478 (484)
Q Consensus       438 ----~f~~la~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (484)
                          -|++.+++.++..+-++++-|.+++..++.++++.+..|.|
T Consensus       320 AWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~~~~~~~~~~~~k~~  364 (735)
T KOG3626|consen  320 AWWLGFLICGALLLFSAVPLFFFPKELPKSQKRKRARDLHVLKTE  364 (735)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCcccCccccccchhhhhcccccc
Confidence                34567778888888888888887765544444444444444

>PTZ00207 hypothetical protein; Provisional

Probab=96.46  E-value=1.6  Score=47.35  Aligned_cols=82  Identities=10%  Similarity=-0.045  Sum_probs=61.2

Q ss_pred             hhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHH-Hhhhheeeeecccccccch
Q 011513           32 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMI-SLTVIVYVQSDVSWAWGLG  110 (484)
Q Consensus        32 ~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i-~~~l~~~l~~~~g~~~~F~  110 (484)
                      .+.+.+++.+.+.++|.+.+.+.....+.++||++       |..+.++...+.++|+++ +++..+++.+  +|+..|+
T Consensus       118 ~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~~-------RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~--~~~~~fl  188 (591)
T PTZ00207        118 GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPSN-------RGAVVAIMKTFTGLGSAILGSIQLAFFSD--NTSAYFF  188 (591)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHH
Confidence            35778899999999999999998899999999742       256888999999999975 5555566543  5666666


Q ss_pred             hhhHHHHHHHHH
Q 011513          111 IPAFMMFLSCAM  122 (484)
Q Consensus       111 i~~~~~~l~~i~  122 (484)
                      +.++..++..++
T Consensus       189 ~l~vl~~vv~ll  200 (591)
T PTZ00207        189 FLMSFALVVGIL  200 (591)
T ss_pred             HHHHHHHHHHHH
Confidence            666555554444

>PRK09952 shikimate transporter; Provisional

Probab=96.40  E-value=0.055  Score=56.44  Aligned_cols=111  Identities=14%  Similarity=0.171  Sum_probs=75.6

Q ss_pred             HHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHH
Q 011513          281 IWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQ  360 (484)
Q Consensus       281 i~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~  360 (484)
                      +..|+.+.+.-++.+|++       ..+-+.+++++.+++.+..++...+-.                ....+.+.++..
T Consensus        75 ~~~~~g~~~~G~l~Dr~G-------rr~~l~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~l~~~  131 (438)
T PRK09952         75 LFRPLGGVVFGHFGDRLG-------RKRMLMLTVWMMGIATALIGLLPSFST----------------IGWWAPVLLVTL  131 (438)
T ss_pred             HHHhhHHHHHHHHHHhhc-------cHHHHHHHHHHHHHHHHHHhcCCcHHH----------------HHHHHHHHHHHH
Confidence            334444444333455543       234466778777777777666432100                000122245667


Q ss_pred             HHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513          361 LSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH  414 (484)
Q Consensus       361 ~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~  414 (484)
                      .++.|+++....|....++.+..|++.||.+++......++|..++..+...+.
T Consensus       132 R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~  185 (438)
T PRK09952        132 RAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLIS  185 (438)
T ss_pred             HHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            889999999999999999999999999999999999999999998877765543

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=96.39  E-value=0.65  Score=48.73  Aligned_cols=84  Identities=11%  Similarity=-0.005  Sum_probs=57.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCc
Q 011513          306 ILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPE  385 (484)
Q Consensus       306 ~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~  385 (484)
                      +.+-+.+++++.++..+..++...        +           ...|.+.+....++.|++ ....+.....+.+..|+
T Consensus        99 ~R~v~~~~~ll~~i~~~~~~~a~~--------~-----------~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~  158 (462)
T PRK15034         99 GRRWTVFSTAILIIPCVWLGIAVQ--------N-----------PNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPK  158 (462)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHc--------c-----------cCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCH
Confidence            334566777777777776665311        0           113566677788999998 55778899999999999


Q ss_pred             hhhhhHHhhHHHHHHHHHHHHHHH
Q 011513          386 NMRSIGGSLAFVGFAISNYLNGFL  409 (484)
Q Consensus       386 ~~~g~~~gl~~l~~~iG~~lg~~l  409 (484)
                      +.||+++|++.-..++|..++..+
T Consensus       159 ~~rG~A~Gi~~g~G~~G~~l~~~l  182 (462)
T PRK15034        159 AKQGSALGINGGLGNLGVSVMQLV  182 (462)
T ss_pred             hHhHHHHHHHHHHHhhHHHHHHHH
Confidence            999999999854344444443333

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=96.36  E-value=0.087  Score=53.73  Aligned_cols=61  Identities=5%  Similarity=-0.122  Sum_probs=47.6

Q ss_pred             hHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513          353 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR  415 (484)
Q Consensus       353 s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~  415 (484)
                      +.|+++..+++.+.+.....|...+++.+  +++.|+...|......++|..+++.+++.+.+
T Consensus        93 ~~~~l~~~~~l~~~~~~~~~p~~~al~~~--~~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~  153 (382)
T TIGR00902        93 NAWLLFIAIGLFALFFSAGMPIGDALANT--WQKQFGLDYGKVRLIGSAAFIIGSALFGGLIG  153 (382)
T ss_pred             hHHHHHHHHHHHHHHHccchhHHHHHHHH--HHHHcCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566667777887777777887777654  45778999999999999999999998888764

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=96.34  E-value=0.03  Score=57.02  Aligned_cols=127  Identities=17%  Similarity=0.089  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCch--
Q 011513          309 RMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPEN--  386 (484)
Q Consensus       309 ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~--  386 (484)
                      -+.+|.++..+|.+++.+...-     ...          ....+...+.....++++|..+.-|....+..+|-+++  
T Consensus         3 tI~~g~~~~~~G~~ll~l~~~~-----~~~----------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~   67 (372)
T PF00854_consen    3 TILLGSIVYLLGHVLLTLSAIP-----PSL----------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDD   67 (372)
T ss_dssp             HHHHHHHHHHHHHHH--HHHTS-----SSC----------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTT
T ss_pred             hhhHHHHHHHHHHHHhHHHHhc-----chh----------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccch
Confidence            3678888888888886665320     000          01233445566778899999999999999999999887  


Q ss_pred             -hhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCcCccCchhHHHHHHHHHHHHHHHHHHHHhhhcccccCC
Q 011513          387 -MRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGS  465 (484)
Q Consensus       387 -~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~i~~~~~~~~~~~~~~  465 (484)
                       .|......++...++|..++..+.+.+.+..      +          ....|.+.++.++++.++|+.-.++|+++..
T Consensus        68 ~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~------~----------~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~  131 (372)
T PF00854_consen   68 SRRDSFFNWFYWGINIGSLFSPTLVPYIQQNY------G----------WFLGFGIPAIGMLLALIVFLSGRKRYRKVAP  131 (372)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-----------------HHHHHHHHHHHHHHHHHHHHCCCCTT--S--
T ss_pred             hhhhhhHHHHHHHHhhhhHhhcccchhhcccc------c----------hhhhhhHHHHHHHHHHHHHHhCCcCCcCcCc
Confidence             4555666778889999999988877765311      2          3567888888889999999888888887743


Q ss_pred             C
Q 011513          466 G  466 (484)
Q Consensus       466 ~  466 (484)
                      .
T Consensus       132 ~  132 (372)
T PF00854_consen  132 P  132 (372)
T ss_dssp             -
T ss_pred             c
Confidence            3

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PRK15075 citrate-proton symporter; Provisional

Probab=96.34  E-value=0.2  Score=52.05  Aligned_cols=90  Identities=9%  Similarity=0.081  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchh
Q 011513          308 QRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENM  387 (484)
Q Consensus       308 ~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~  387 (484)
                      +-+.++.++.+++.+..++...+..                .......+++...++.|+++....+....++.+..|++.
T Consensus        87 ~~l~~~~~~~~~~~~l~~~~~~~~~----------------~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~  150 (434)
T PRK15075         87 KGLIVTLSIMASGTLLIAFVPGYAT----------------IGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGR  150 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcHHH----------------HHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCccc
Confidence            4467777777777777665432100                000011234556789999999888888899999999999


Q ss_pred             hhhHHhhHHHHHHHHHHHHHHHhHhh
Q 011513          388 RSIGGSLAFVGFAISNYLNGFLISMV  413 (484)
Q Consensus       388 ~g~~~gl~~l~~~iG~~lg~~l~~~~  413 (484)
                      |+.+++++.....+|..+++.++..+
T Consensus       151 rg~~~~~~~~~~~~g~~~g~~~g~~l  176 (434)
T PRK15075        151 KGFYTSWQSASQQVAVVFAALLGYLL  176 (434)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998888778777777776654

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=96.33  E-value=0.085  Score=55.38  Aligned_cols=58  Identities=22%  Similarity=0.209  Sum_probs=51.9

Q ss_pred             hHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHh
Q 011513          353 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLI  410 (484)
Q Consensus       353 s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~  410 (484)
                      +...++...++.|+...+......-++...+|++.||.+..+..+...+|..++..++
T Consensus       115 ~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~  172 (485)
T KOG0569|consen  115 SFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLG  172 (485)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHc
Confidence            4456778999999999999999999999999999999999998999999999887665

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.23  E-value=0.00093  Score=71.46  Aligned_cols=182  Identities=12%  Similarity=-0.019  Sum_probs=3.0

Q ss_pred             cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH----hhhhhcc-----CC
Q 011513          269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDK----RRSLALS-----RP  339 (484)
Q Consensus       269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~----~~~~~~~-----~g  339 (484)
                      +++.+.+=+..+++..++..        +++|   -..++-+++|.+++++|.++.++-+..    .......     +.
T Consensus        41 G~i~s~~di~~~~~~~~vsy--------~g~~---~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~  109 (539)
T PF03137_consen   41 GLISSSYDIGSLVVVLFVSY--------FGGR---GHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSI  109 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHH--------Hhhh---cCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccccccc
Confidence            34445554555555444333        2332   234677999999999999998875431    1111100     00


Q ss_pred             C--cc-----------ccc----CCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHH
Q 011513          340 V--GL-----------EQR----RGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAIS  402 (484)
Q Consensus       340 ~--~~-----------~~~----~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG  402 (484)
                      .  -+           .++    .+.....-.++++..-++.|+|..-..+.+.+++.+.++++..+.|.|+++....+|
T Consensus       110 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lG  189 (539)
T PF03137_consen  110 SSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILG  189 (539)
T ss_dssp             ------------------------------------------SSS-----------------------------------
T ss_pred             ccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhcc
Confidence            0  01           000    011222234556677799999999999999999999999999999999999999888


Q ss_pred             HHHHHHHhHhhcc----cccCCCCCCCCCcCccCchhHHH----HHHHHHHHHHHHHHHHHhhhccccc
Q 011513          403 NYLNGFLISMVHR----FTKGASTGDWLPEDLNKGRLDYF----YYLVAALGLLNFGFFLLCAKWYKYK  463 (484)
Q Consensus       403 ~~lg~~l~~~~~~----~~~~~~~~~w~~~~ln~~~~~~~----f~~la~l~~~~~i~~~~~~~~~~~~  463 (484)
                      -.+|-++++...+    ....+ .++ ..-+.++.+---.    |.+.+.+.++..+-+..+-|+..+.
T Consensus       190 Pa~Gf~lg~~~L~~yvD~~~~~-~~~-~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~  256 (539)
T PF03137_consen  190 PALGFLLGSFCLRIYVDFPKVP-PDG-VGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGT  256 (539)
T ss_dssp             ---------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHhceeCCcccc-ccC-CCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCc
Confidence            8877666655432    21100 000 0000111111112    3356666666666666666666555

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR00889 2A0110 nucleoside transporter

Probab=96.19  E-value=0.0028  Score=65.74  Aligned_cols=86  Identities=10%  Similarity=0.079  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHH-HhhhHHHHHHhhhheeeeec------cccc
Q 011513           34 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYY-FTFTFAMMISLTVIVYVQSD------VSWA  106 (484)
Q Consensus        34 ~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y-~~iNiG~~i~~~l~~~l~~~------~g~~  106 (484)
                      ...+++...+.+++.+...|+...++.|++++++      +.+++++.+ ...++|.++||.++|++.++      +||+
T Consensus       308 ~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~------~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~  381 (418)
T TIGR00889       308 YALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI------RASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQ  381 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchH
Confidence            4567778889999999999999999999998532      467888886 56789999999999999886      4699


Q ss_pred             ccchhhhHHHHHHHHHHHh
Q 011513          107 WGLGIPAFMMFLSCAMFFL  125 (484)
Q Consensus       107 ~~F~i~~~~~~l~~i~~l~  125 (484)
                      .+|.++++..++..+++++
T Consensus       382 ~~f~~~~~~~~i~~~l~~~  400 (418)
T TIGR00889       382 TMWLFFAGYIAILAVLFMI  400 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999888877777666544

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=96.16  E-value=0.65  Score=47.34  Aligned_cols=58  Identities=10%  Similarity=0.090  Sum_probs=52.4

Q ss_pred             HHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513          357 LIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH  414 (484)
Q Consensus       357 li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~  414 (484)
                      ....|++.|+|--......++++.|.+|++.|+...++.+...-+|..++..+.+..-
T Consensus        92 a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL  149 (403)
T PF03209_consen   92 AALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLL  149 (403)
T ss_pred             HHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4468899999999999999999999999999999999999999999999888877653

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR01272 gluP glucose/galactose transporter

Probab=96.14  E-value=0.033  Score=55.33  Aligned_cols=62  Identities=6%  Similarity=-0.070  Sum_probs=57.6

Q ss_pred             hHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513          353 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH  414 (484)
Q Consensus       353 s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~  414 (484)
                      |..+.+..+++.+.|-.+..+..+.++.+..|++.++..+++.....++|..+||.+++.+.
T Consensus         9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i   70 (310)
T TIGR01272         9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLI   70 (310)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            56678889999999999999999999999999999999999999999999999999998765

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=96.09  E-value=0.035  Score=57.92  Aligned_cols=71  Identities=8%  Similarity=0.108  Sum_probs=56.1

Q ss_pred             CCCCccchHHHHHHH-HHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhccc
Q 011513          346 RGAISSLSGLWLIPQ-LSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRF  416 (484)
Q Consensus       346 ~~~~~~~s~~~li~~-~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~  416 (484)
                      ++....++.+.+... .++.|++--+++....+..+++.-+..+|+++|++.+...++..+++.+.......
T Consensus       379 c~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~  450 (488)
T KOG2325|consen  379 CDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTL  450 (488)
T ss_pred             hccCcccChhhheeehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHh
Confidence            333344444433333 46788888899999999999999999999999999999999999999998776543

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=96.02  E-value=0.19  Score=51.17  Aligned_cols=61  Identities=8%  Similarity=-0.095  Sum_probs=44.1

Q ss_pred             hHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513          353 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR  415 (484)
Q Consensus       353 s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~  415 (484)
                      +.|.+....++.+++.....|...+.+.+.  ++.|+..+|......++|..+|+.+++++.+
T Consensus        93 ~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~  153 (382)
T PRK11128         93 SFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVS  153 (382)
T ss_pred             cHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence            355555566778888877778766666655  3446677777777788999999999888753

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=96.01  E-value=0.19  Score=51.46  Aligned_cols=116  Identities=13%  Similarity=-0.048  Sum_probs=66.3

Q ss_pred             cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513          269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA  348 (484)
Q Consensus       269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  348 (484)
                      ++..++..+...+..|+.+++.    +|.++|       +.+..+++..++++.........        .         
T Consensus        41 g~~~~~~~l~~~i~~~~~G~l~----Dr~grr-------~~~~~~~~~~~~~~~~~~~~~~~--------~---------   92 (396)
T TIGR00882        41 GIVFSCISLFSILFQPLFGLIS----DKLGLK-------KHLLWIISGLLVLFAPFFIYVFG--------P---------   92 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----HHhCcH-------HHHHHHHHHHHHHHHHHHHHHhh--------h---------
Confidence            5667788888899999988864    443221       22333333333332221111000        0         


Q ss_pred             CccchHH-HHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513          349 ISSLSGL-WLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH  414 (484)
Q Consensus       349 ~~~~s~~-~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~  414 (484)
                      ......+ ......++.+++.....+...+++.+..++  ++...|......++|..+|+.+++.+.
T Consensus        93 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~g~~~g~~~~g~l~  157 (396)
T TIGR00882        93 LLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSRN--SNFEYGKARMFGCVGWALCASIAGILF  157 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhhh--cccccchhhhhcccHHHHHHHHHhhhh
Confidence            0001122 234456777888887788887777765543  344566666777888888888887764

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=95.94  E-value=0.0017  Score=69.52  Aligned_cols=92  Identities=16%  Similarity=0.253  Sum_probs=2.9

Q ss_pred             hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeec----------
Q 011513           33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSD----------  102 (484)
Q Consensus        33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~----------  102 (484)
                      -...|++|-++.|+|...+.+.-.+++-|-.++++      ..-.+.++|.+..+|.++|.++++..-+.          
T Consensus       140 ~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~  213 (539)
T PF03137_consen  140 YFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPD  213 (539)
T ss_dssp             ------------SSS-----------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHhccccCCccceeeeecccccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCcccccc
Confidence            46889999999999999988877777776665432      24688899999999999999988765321          


Q ss_pred             -----------cc-ccccchhhhHHHHHHHHHHHhcccee
Q 011513          103 -----------VS-WAWGLGIPAFMMFLSCAMFFLGSRLY  130 (484)
Q Consensus       103 -----------~g-~~~~F~i~~~~~~l~~i~~l~~~~~~  130 (484)
                                 .| |+++|++.++..++..+.++..-|+.
T Consensus       214 ~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~l  253 (539)
T PF03137_consen  214 GVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKL  253 (539)
T ss_dssp             ----------------------------------------
T ss_pred             CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccC
Confidence                       23 99999999999988887776654544

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=95.87  E-value=0.11  Score=53.59  Aligned_cols=96  Identities=16%  Similarity=0.124  Sum_probs=66.1

Q ss_pred             CCCCCCchhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeec--
Q 011513           25 ACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSD--  102 (484)
Q Consensus        25 ~~~~~~~~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~--  102 (484)
                      .|.++...-...+..-+.++++|.|+=.|+..+...+.-.+.  +|-......|...=+++-.|+.++.++.+.....  
T Consensus       135 ~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~--~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~  212 (538)
T KOG0252|consen  135 VGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKK--TRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFN  212 (538)
T ss_pred             CCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhc--cccceeEEEEEecchhHhhccHHHHHHHHHHhccCC
Confidence            445555567788999999999999999999888888775542  1222345567777788888888887777665432  


Q ss_pred             ---------ccccccchhhhHHHHHHHHHHHh
Q 011513          103 ---------VSWAWGLGIPAFMMFLSCAMFFL  125 (484)
Q Consensus       103 ---------~g~~~~F~i~~~~~~l~~i~~l~  125 (484)
                               .=||..|.+   +.+.+++++.+
T Consensus       213 ~~~~~~~ld~vWRl~~gl---g~vpa~~~ly~  241 (538)
T KOG0252|consen  213 GPSTYPHLDGVWRIIFGL---GAVPALLVLYF  241 (538)
T ss_pred             CCCCchHHHHHHHHHHHH---HHHHHHHHHHh
Confidence                     338877754   44455555443

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=95.85  E-value=0.42  Score=48.72  Aligned_cols=85  Identities=18%  Similarity=0.162  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCcCccCch
Q 011513          355 LWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGR  434 (484)
Q Consensus       355 ~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~ln~~~  434 (484)
                      +|+.....+.++......+....+..+..+++.++.+.+.......+|..+|+.+.+.+.+..      +|         
T Consensus        98 ~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~------gw---------  162 (390)
T TIGR02718        98 GWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKF------GQ---------  162 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CH---------
Confidence            354444455556666666777778888888888888888887777888888887766554321      23         


Q ss_pred             hHHHHHHHHHHHHHHHHHHHH
Q 011513          435 LDYFYYLVAALGLLNFGFFLL  455 (484)
Q Consensus       435 ~~~~f~~la~l~~~~~i~~~~  455 (484)
                       ...|++.+++.++..+..++
T Consensus       163 -~~~f~~~a~l~~~~~~~~~~  182 (390)
T TIGR02718       163 -RPAFLLVACVPLASLVCVLW  182 (390)
T ss_pred             -HHHHHHHHHHHHHHHHHHHH
Confidence             34667777777665555433

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=95.84  E-value=0.26  Score=50.62  Aligned_cols=61  Identities=10%  Similarity=0.000  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeee
Q 011513           35 AFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQS  101 (484)
Q Consensus        35 ~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~  101 (484)
                      .+...|=.+.+...-.+.-.-+-+-+-+|++++      |..+-.+-.++.-+|.++|.++.+.+..
T Consensus       141 ~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q------ra~A~~~~v~~n~LGvavg~llppilV~  201 (480)
T KOG2563|consen  141 PLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ------RAIATVLGVMGNPLGVAVGFLLPPILVP  201 (480)
T ss_pred             hhhHHhHHHHHHhhhHhhccccHHHHhhCCcch------hhhhhhHHHhcchHHHHHHhhccceecC
Confidence            466777777788777777766777788888642      3556666667777777777777666643

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=95.77  E-value=0.19  Score=53.54  Aligned_cols=106  Identities=17%  Similarity=0.129  Sum_probs=84.6

Q ss_pred             cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513          269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA  348 (484)
Q Consensus       269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  348 (484)
                      +++.+...+...+..++.+++.    +++++       .+-+.++.++..++.++.++.                     
T Consensus        92 s~~~s~~~lga~~g~l~~g~l~----d~~GR-------k~~l~~~~~~~~iG~ii~~~a---------------------  139 (513)
T KOG0254|consen   92 GLLTSILNLGALVGSLLAGRLG----DRIGR-------KKTLLLAVVLFLIGAIIIALA---------------------  139 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----HHhhh-------HHHHHHHHHHHHHHHHHHHHh---------------------
Confidence            5777777787888888777754    33321       234667777777777776664                     


Q ss_pred             CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHH
Q 011513          349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFL  409 (484)
Q Consensus       349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l  409 (484)
                         .++++++...++.|+|-.+.+....-++.+.+|++.||.+.++..+...+|..++-.+
T Consensus       140 ---~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~  197 (513)
T KOG0254|consen  140 ---PSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCI  197 (513)
T ss_pred             ---hhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence               2577888999999999999999999999999999999999999999999988888333

>PRK09528 lacY galactoside permease; Reviewed

Probab=95.65  E-value=0.3  Score=50.45  Aligned_cols=29  Identities=10%  Similarity=-0.002  Sum_probs=22.5

Q ss_pred             hhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513          387 MRSIGGSLAFVGFAISNYLNGFLISMVHR  415 (484)
Q Consensus       387 ~~g~~~gl~~l~~~iG~~lg~~l~~~~~~  415 (484)
                      .+|..+|......++|..+++.+++.+.+
T Consensus       138 ~~g~~~g~~~~~~~~g~~i~~~~~g~l~~  166 (420)
T PRK09528        138 RSGFEYGRARMWGSLGWALCAFIAGILFN  166 (420)
T ss_pred             hccccchhhHHhhhHHHHHHHHHHHHHHh
Confidence            45677788777788899999888887653

>PRK11462 putative transporter; Provisional

Probab=95.64  E-value=0.39  Score=50.53  Aligned_cols=59  Identities=14%  Similarity=-0.018  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHhHHHHHHhHHHHHhhcccC-chhhhhHHhhHHHHHHHHHHHHHHHhHh
Q 011513          354 GLWLIPQLSLIGFSEAFTIIAEVEFYYKQFP-ENMRSIGGSLAFVGFAISNYLNGFLISM  412 (484)
Q Consensus       354 ~~~li~~~~l~~igE~l~~p~~~~~~~~~aP-~~~~g~~~gl~~l~~~iG~~lg~~l~~~  412 (484)
                      ..|....|++..++--+....-.++....++ ++.|+..++.......+|..+++.+...
T Consensus       109 ~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~p  168 (460)
T PRK11462        109 MIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMP  168 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5678888999999999999999999999988 8999999999998888888877766533

>PF13347 MFS_2: MFS/sugar transport protein

Probab=95.57  E-value=0.068  Score=55.48  Aligned_cols=120  Identities=18%  Similarity=0.172  Sum_probs=78.8

Q ss_pred             HHHHHHHHhHHHHhhhhhhhcCCC-CCCchH-HHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHH
Q 011513          279 LTIWIPIYDRIIVPRLQRLTKKEG-GITILQ-RMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLW  356 (484)
Q Consensus       279 iii~~pl~~~~~~pl~~k~~~~~~-~~s~~~-ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~  356 (484)
                      +.+..++.|.+.+|+.-.+.+|.+ +....+ -+.+|.++.++++.........        +        ........|
T Consensus        42 i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~--------~--------~~~~~~~~~  105 (428)
T PF13347_consen   42 ILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPA--------G--------LSFTAKLVW  105 (428)
T ss_pred             HHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccc--------h--------hhhhhHHHH
Confidence            444456666666666543333210 011111 1667888888888877654110        0        001235667


Q ss_pred             HHHHHHHHHhHHHHHHhHHHHHhhcccC-chhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513          357 LIPQLSLIGFSEAFTIIAEVEFYYKQFP-ENMRSIGGSLAFVGFAISNYLNGFLISMVH  414 (484)
Q Consensus       357 li~~~~l~~igE~l~~p~~~~~~~~~aP-~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~  414 (484)
                      +...|++..++--+....-.++..+.++ ++.|....+.-.+...+|..+...+...+.
T Consensus       106 ~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~  164 (428)
T PF13347_consen  106 LFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILV  164 (428)
T ss_pred             HHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            7888888899999999999999999998 578999999888888888876666655543

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=95.53  E-value=0.23  Score=47.62  Aligned_cols=122  Identities=17%  Similarity=0.088  Sum_probs=82.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCc
Q 011513          306 ILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPE  385 (484)
Q Consensus       306 ~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~  385 (484)
                      |..-..+|.++..+|+......-..+                 ....+.|.+.....+.+.|..+......--..+.-|+
T Consensus        65 p~~~l~iG~~~~~~GY~~~~l~~~~~-----------------i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~  127 (250)
T PF06813_consen   65 PWVVLLIGAVLGFVGYGLLWLAVSGR-----------------IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR  127 (250)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhCc-----------------cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc
Confidence            44557788888888888876653311                 0124555555555677788877777777777788885


Q ss_pred             hhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCcCccCchhHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 011513          386 NMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKY  462 (484)
Q Consensus       386 ~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~i~~~~~~~~~~~  462 (484)
                       .||.+.|+.--..++++.+=..+...+.+            +     +.+.|..+++....+..++...+.|..++
T Consensus       128 -~RG~vvgilk~~~GLSaai~t~i~~~~f~------------~-----~~~~fll~la~~~~~v~l~~~~~vr~~~~  186 (250)
T PF06813_consen  128 -SRGTVVGILKGFFGLSAAIFTQIYSAFFG------------D-----DPSSFLLFLAVLPAVVCLVAMFFVRPVPP  186 (250)
T ss_pred             -ccCceehhhhHHHHhHHHHHHHHHHHHcC------------C-----ChHHHHHHHHHHHHHHHHHHhhheeccCC
Confidence             69999999988888888775555444332            1     13457777787777666666666666654

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=95.52  E-value=0.7  Score=49.94  Aligned_cols=137  Identities=14%  Similarity=0.282  Sum_probs=85.8

Q ss_pred             ccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCC
Q 011513          268 AASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRG  347 (484)
Q Consensus       268 ~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~  347 (484)
                      ..|+...+.+...+..|+++++.+=    +++       ..-+.+|.++..+|.++.+-.+                   
T Consensus        80 ~~w~~~~~~l~~av~~~~~G~LSDl----fGR-------r~~~i~g~~l~vvG~Iv~atA~-------------------  129 (599)
T PF06609_consen   80 WSWFSTAWTLASAVSFPFVGRLSDL----FGR-------RYFFIIGSLLGVVGSIVCATAQ-------------------  129 (599)
T ss_pred             chHHHHHHHHHHHHHHHhhHHHHHH----hcc-------hHHHHHHHHHHHhHHHHhhcCC-------------------
Confidence            3577788888888888998887542    221       1336678888888887765432                   


Q ss_pred             CCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCC
Q 011513          348 AISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLP  427 (484)
Q Consensus       348 ~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~  427 (484)
                           ++.-++-..++.|+|-...... ...+.+..|.+.|+...++..+...+....|+.+...+...      .+|  
T Consensus       130 -----~~~~~iag~~l~GvgaG~~~~~-~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~------~~W--  195 (599)
T PF06609_consen  130 -----NMNTFIAGMVLYGVGAGVQELA-ALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAH------SGW--  195 (599)
T ss_pred             -----cHHHHHHHHHHHHHhhHHHHHH-HHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccC------CCc--
Confidence                 2224556778888876555543 45578889999998877766655555555666666554321      256  


Q ss_pred             cCccCchhHHHHHHHHHHHHHHHHHHHHh
Q 011513          428 EDLNKGRLDYFYYLVAALGLLNFGFFLLC  456 (484)
Q Consensus       428 ~~ln~~~~~~~f~~la~l~~~~~i~~~~~  456 (484)
                              .+.|++.+++..+.++..+++
T Consensus       196 --------Rw~~~~~~i~~~i~~vl~~~f  216 (599)
T PF06609_consen  196 --------RWIFYIFIIWSGIALVLIFFF  216 (599)
T ss_pred             --------chHHHHHHHHHHHHHHHHHHH
Confidence                    344455555555555444433

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=95.37  E-value=0.099  Score=52.56  Aligned_cols=111  Identities=13%  Similarity=0.083  Sum_probs=81.4

Q ss_pred             cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513          269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA  348 (484)
Q Consensus       269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  348 (484)
                      +.+-+.-.+.=.+..|+.+.+.    +++++|   |    -+.+|.+..++++...+....                   
T Consensus        71 GflGSsF~ilQ~~sS~~~G~~S----D~yGRk---p----vll~c~~~va~s~ll~~~S~~-------------------  120 (451)
T KOG2615|consen   71 GFLGSSFSILQFISSPLWGCLS----DRYGRK---P----VLLACLIGVALSYLLWALSRN-------------------  120 (451)
T ss_pred             hhHhhHHHHHHHHhhhhhhhhh----hhhCch---H----HHHHHHHHHHHHHHHHHHHHH-------------------
Confidence            3444444555566777777753    344322   3    366777778887777766432                   


Q ss_pred             CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513          349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR  415 (484)
Q Consensus       349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~  415 (484)
                           ...++.+.++.|+.-..+++. -+++.+.++++.|+..|+....+.++|..+||++++....
T Consensus       121 -----F~afv~aR~l~Gi~kgnl~v~-rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  121 -----FAAFVLARFLGGIFKGNLSVI-RAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             -----HHHHHHHHHhhhhccCchHHH-HHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence                 334556678888888777765 7899999999999999999999999999999999998765

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=95.33  E-value=1.2  Score=45.36  Aligned_cols=91  Identities=12%  Similarity=-0.011  Sum_probs=72.0

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhccc
Q 011513          304 ITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQF  383 (484)
Q Consensus       304 ~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~a  383 (484)
                      .+..+-+.+|+.+++++..+..=...                     .-+...++...++++.|-.+...++..++..+.
T Consensus        75 ~gyk~gi~lgL~l~avg~~lF~pAa~---------------------~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg  133 (422)
T COG0738          75 LGYKAGIVLGLLLYAVGAALFWPAAS---------------------SKSYGFFLVALFILASGIGLLETAANPYVTLLG  133 (422)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHhhhhh---------------------hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhC
Confidence            56667799999999998877643221                     123444556778899999999999999999999


Q ss_pred             CchhhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513          384 PENMRSIGGSLAFVGFAISNYLNGFLISMVHR  415 (484)
Q Consensus       384 P~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~  415 (484)
                      |++..+.=+.+.....++|..++|.+++..-.
T Consensus       134 ~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lil  165 (422)
T COG0738         134 KPESAAFRLNLAQAFNGLGAILGPLLGSSLIL  165 (422)
T ss_pred             CchhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            99888888888888889999999988876543

>PRK09669 putative symporter YagG; Provisional

Probab=95.00  E-value=0.22  Score=51.96  Aligned_cols=60  Identities=8%  Similarity=-0.097  Sum_probs=45.1

Q ss_pred             chHHHHHHHHHHHHhHHHHHHhHHHHHhhccc-CchhhhhHHhhHHHHHHHHHHHHHHHhH
Q 011513          352 LSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQF-PENMRSIGGSLAFVGFAISNYLNGFLIS  411 (484)
Q Consensus       352 ~s~~~li~~~~l~~igE~l~~p~~~~~~~~~a-P~~~~g~~~gl~~l~~~iG~~lg~~l~~  411 (484)
                      ...+|....|++.+++--+..+.-.++..+.. +++.|+...+.-.....+|..+++.+..
T Consensus       107 ~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~  167 (444)
T PRK09669        107 GKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIAL  167 (444)
T ss_pred             hHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34667777888877777677777778888877 5677888888888878888887766543

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=94.95  E-value=1.9e-05  Score=82.45  Aligned_cols=83  Identities=14%  Similarity=0.172  Sum_probs=62.7

Q ss_pred             hhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeee---ccccccc
Q 011513           32 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQS---DVSWAWG  108 (484)
Q Consensus        32 ~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~---~~g~~~~  108 (484)
                      .+...+.+++.+.|+|.|+..+....++.+..+++.      |.....+...+.++|.+++..++-.+..   +.+|++.
T Consensus       100 ~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~  173 (451)
T PF00083_consen  100 NNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRIL  173 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccccc
Confidence            378889999999999999999999999999887632      2345566667888888888776544433   3459999


Q ss_pred             chhhhHHHHHHH
Q 011513          109 LGIPAFMMFLSC  120 (484)
Q Consensus       109 F~i~~~~~~l~~  120 (484)
                      +.++.+..++..
T Consensus       174 ~~~~~~~~l~~~  185 (451)
T PF00083_consen  174 LIFGAIPSLLVL  185 (451)
T ss_pred             cccccccccccc
Confidence            987776665544

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK10429 melibiose:sodium symporter; Provisional

Probab=94.67  E-value=1.3  Score=46.72  Aligned_cols=58  Identities=7%  Similarity=-0.050  Sum_probs=46.4

Q ss_pred             hHHHHHHHHHHHHhHHHHHHhHHHHHhhccc-CchhhhhHHhhHHHHHHHHHHHHHHHh
Q 011513          353 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQF-PENMRSIGGSLAFVGFAISNYLNGFLI  410 (484)
Q Consensus       353 s~~~li~~~~l~~igE~l~~p~~~~~~~~~a-P~~~~g~~~gl~~l~~~iG~~lg~~l~  410 (484)
                      ..+|+...|++..++--+..+.-.++..+.+ +++.|....+.-....++|+.+.+.+.
T Consensus       105 ~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~  163 (473)
T PRK10429        105 QYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFT  163 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4667888888888888888899999999998 699999988876666777766655543

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=94.58  E-value=0.91  Score=46.32  Aligned_cols=118  Identities=11%  Similarity=0.086  Sum_probs=74.3

Q ss_pred             cccccccchhhHHHHHHHHHHHhHHHHh-hhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCccc
Q 011513          265 KIPAASYAIFSMLGLTIWIPIYDRIIVP-RLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLE  343 (484)
Q Consensus       265 ~i~~~~~~~~n~~~iii~~pl~~~~~~p-l~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~  343 (484)
                      .+.+++...+..+-++..+.+  |+.|- +.+|       ..+.+-..+++++..+-.+..++..+              
T Consensus        45 ~LS~~q~~ll~aiPil~Gall--Rl~~g~l~dr-------fGgR~~~~~s~~l~~IP~~~~~~a~~--------------  101 (417)
T COG2223          45 GLSEGQKGLLVAIPILVGALL--RLPYGFLTDR-------FGGRKWTILSMLLLLIPCLGLAFAVT--------------  101 (417)
T ss_pred             CCCHHHHHHHHHHHHHHhHHH--HHHHHhhhcc-------cCchHHHHHHHHHHHHHHHHHHHHcc--------------
Confidence            356666655555555554432  33222 2333       33445567778887888877777654              


Q ss_pred             ccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513          344 QRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH  414 (484)
Q Consensus       344 ~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~  414 (484)
                             ..+.|+++..-++.|++-. ....++..+.+.-||+.+|..+|++. ..++|..+...+...+.
T Consensus       102 -------~~~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~  163 (417)
T COG2223         102 -------YPSTWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVA  163 (417)
T ss_pred             -------CCchHHHHHHHHHHhcccc-eehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHH
Confidence                   1223444444566676654 33456788899999999999999998 67777777666666554

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=94.52  E-value=1.3  Score=44.42  Aligned_cols=138  Identities=18%  Similarity=0.234  Sum_probs=93.9

Q ss_pred             ccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCC
Q 011513          268 AASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRG  347 (484)
Q Consensus       268 ~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~  347 (484)
                      .+.+.+++-+..=++.|+..++    -||       .++.+-+..++++.+++..+=..                     
T Consensus        49 aGlLTtLPll~fg~~ap~a~~L----ar~-------~g~er~l~~~Llli~~G~~iR~~---------------------   96 (395)
T COG2807          49 AGLLTTLPLLAFGLFAPAAPRL----ARR-------FGEERSLFLALLLIAAGILIRSL---------------------   96 (395)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHH----HHH-------HhhHHHHHHHHHHHHHHHHHHhc---------------------
Confidence            4566667666666666665442    333       55667777888777666544211                     


Q ss_pred             CCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCC
Q 011513          348 AISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLP  427 (484)
Q Consensus       348 ~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~  427 (484)
                          -+.+.+....++.+.|-.....-..+++-+.-|++. +.+||+|..+.++|..+++.+...+....     ++|  
T Consensus        97 ----~~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~-~~mtglYs~sl~~~aaLaa~lavpla~~~-----~gW--  164 (395)
T COG2807          97 ----GGLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRV-GLMTGLYSTSLGAGAALAAALAVPLAQHS-----GGW--  164 (395)
T ss_pred             ----ccHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccch-hhHHhHHHHHHHHHHHHHhhhhhHHHHhh-----ccH--
Confidence                134456677789999999999999999999999988 78999999999999999988876654322     246  


Q ss_pred             cCccCchhHHHHHHHHHHHHHHHHHHHHhh
Q 011513          428 EDLNKGRLDYFYYLVAALGLLNFGFFLLCA  457 (484)
Q Consensus       428 ~~ln~~~~~~~f~~la~l~~~~~i~~~~~~  457 (484)
                            +...  ...+.++++++++.+-..
T Consensus       165 ------~~aL--~~WAl~allAl~~WlPq~  186 (395)
T COG2807         165 ------RGAL--GFWALLALLALLIWLPQA  186 (395)
T ss_pred             ------HHHH--HHHHHHHHHHHHHHhhhc
Confidence                  1222  233556666666655543

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=94.15  E-value=0.84  Score=48.62  Aligned_cols=111  Identities=14%  Similarity=0.148  Sum_probs=84.4

Q ss_pred             ccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCC
Q 011513          268 AASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRG  347 (484)
Q Consensus       268 ~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~  347 (484)
                      .+|..++......+..|+...+    .+|++       -..-+.+|-+++++|++...+..                   
T Consensus        83 ~~~i~sl~~~~~~~~gpl~s~l----~~rfg-------~R~v~i~G~~v~~~g~~lssF~~-------------------  132 (509)
T KOG2504|consen   83 IAWIGSLLLGVYLLAGPLVSAL----CNRFG-------CRTVMIAGGLVAALGLLLSSFAT-------------------  132 (509)
T ss_pred             HHHHHHHHHHHHHHhccHHHHH----HhhcC-------chHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence            5788888888888888887764    56643       34557889999999999988863                   


Q ss_pred             CCccchHHHHHHHH-HHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513          348 AISSLSGLWLIPQL-SLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH  414 (484)
Q Consensus       348 ~~~~~s~~~li~~~-~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~  414 (484)
                           ++|.+...| ++.|+|-.++.......+. +=.++.|++++|+-....++|..+=+.+.....
T Consensus       133 -----~i~~l~lt~gvi~G~G~~~~~~paiviv~-~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~  194 (509)
T KOG2504|consen  133 -----SLWQLYLTFGVIGGLGLGLIYLPAVVILG-TYFEKKRALATGIAVSGTGVGTVVFPPLLKYLL  194 (509)
T ss_pred             -----hHHHHHHHHHHHhhccchhhhcchhhhhh-hHhHHHHHHHHhhhhccCCcceeeHHHHHHHHH
Confidence                 344555544 7889999888888877777 456778999999999999998887666665543

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=94.09  E-value=0.83  Score=47.67  Aligned_cols=85  Identities=19%  Similarity=0.221  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcc---cCch
Q 011513          310 MAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQ---FPEN  386 (484)
Q Consensus       310 i~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~---aP~~  386 (484)
                      +.+|.++.+++.+.++.....                    ..+........++.++|.++.....-+.+.+.   -|++
T Consensus        62 ~~i~~~~~~~~~~~~~~~~~~--------------------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~  121 (433)
T PF03092_consen   62 MIIGWLLGAVSALVLALLPAS--------------------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES  121 (433)
T ss_pred             HHHHHHHHHHHHHHHHhcccc--------------------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch
Confidence            566776666666655554220                    11222333344566666666666555555444   4666


Q ss_pred             hhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513          387 MRSIGGSLAFVGFAISNYLNGFLISMVHR  415 (484)
Q Consensus       387 ~~g~~~gl~~l~~~iG~~lg~~l~~~~~~  415 (484)
                       +|..++..+....+|+.++..+++...+
T Consensus       122 -~g~lqS~~~~~~~~G~lv~~~l~G~l~~  149 (433)
T PF03092_consen  122 -RGDLQSFVWGVRSVGSLVGSLLSGPLLD  149 (433)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence             8899999999999999999888877653

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=93.87  E-value=1.9  Score=38.17  Aligned_cols=61  Identities=16%  Similarity=0.228  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513          354 GLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH  414 (484)
Q Consensus       354 ~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~  414 (484)
                      .+.+++.-++.|+|+.+.+...-.++.+.+.++.+++..|+++.....+.++|+.+.-++.
T Consensus        89 ~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~  149 (156)
T PF05978_consen   89 SYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF  149 (156)
T ss_pred             HHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567788899999999999999999999999999999999999888888888877765543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=93.70  E-value=0.59  Score=49.84  Aligned_cols=85  Identities=13%  Similarity=0.165  Sum_probs=63.4

Q ss_pred             chHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCcCcc
Q 011513          352 LSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLN  431 (484)
Q Consensus       352 ~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~ln  431 (484)
                      .+.++++...++.|++..-....+...+.+..+++.|+..+.+ ......+..+++.+++.+..        +|      
T Consensus       169 ~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--------~W------  233 (521)
T KOG0255|consen  169 PNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--------DW------  233 (521)
T ss_pred             CcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--------hH------
Confidence            4566778888999999999999999999999999999999999 55566666666666655542        45      


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHH
Q 011513          432 KGRLDYFYYLVAALGLLNFGFFLL  455 (484)
Q Consensus       432 ~~~~~~~f~~la~l~~~~~i~~~~  455 (484)
                          ..+++..++.+++..+++++
T Consensus       234 ----r~~~~~~~~~~~~~~~~~~l  253 (521)
T KOG0255|consen  234 ----RWLFWIISIPSGLFLLLWFL  253 (521)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHc
Confidence                45666666666655555333

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=93.46  E-value=0.17  Score=54.50  Aligned_cols=214  Identities=19%  Similarity=0.158  Sum_probs=114.8

Q ss_pred             HHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhhhHH
Q 011513           36 FLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFM  115 (484)
Q Consensus        36 ~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~~~~  115 (484)
                      ..|+...+...+ +..++|++++.|+++....  -.+.+.-+|..+|+.+|+++++..+.            .|+++...
T Consensus        61 v~ylt~~~~~~~-~~aa~~v~~f~G~~~~~~l--~g~~laD~f~gry~tI~~~s~i~~~G------------~~~lt~~a  125 (571)
T KOG1237|consen   61 VTYLTLELHASG-GGAANNVNAFGGTQFLLPL--LGAFLADSFLGRYFTINIGSLISLLG------------LFGLTLSA  125 (571)
T ss_pred             HHHHHHHhccch-HHHHHHHHHHhhHHHHHHH--HHHHHHHHHhHHHHHHHHHHHHHHHH------------HHHHHHHH
Confidence            345555555555 8889999999999987621  12335668889999999999987554            56566666


Q ss_pred             HHHHHHHHHhccceeeecC-CCCCchhhHHHHHHHHHHhccccCCCCCccccccCCCccccCCCCCCCCccccccccccc
Q 011513          116 MFLSCAMFFLGSRLYAKVK-PEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIM  194 (484)
Q Consensus       116 ~~l~~i~~l~~~~~~~~~~-p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~i~  194 (484)
                      ++.++...-+   .+.... ..++|-+....++..++..........+                      ..+++.    
T Consensus       126 ~~~~l~p~~~---~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r----------------------~~~~~f----  176 (571)
T KOG1237|consen  126 MIPALLPFMC---KFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIR----------------------PCLLAF----  176 (571)
T ss_pred             HhhhcCCccc---cCCCCCCcccCcchHHHHHHHHHHHHheeccCCCC----------------------Ccchhh----
Confidence            6555533222   111111 1122222223333333332211100000                      001111    


Q ss_pred             CCccccccCCCCCCCcccCcchhHHHHHHhHhhHHHHHHHHHHHHHHhchhhHHHHHHHhcCC-CCCCccccccccccch
Q 011513          195 TPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDR-RVGNTHFKIPAASYAI  273 (484)
Q Consensus       195 ~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~~~~~~-~~g~~g~~i~~~~~~~  273 (484)
                               |.  +.+   .+...++++.        ....++|..+.|..+.++.|..-++. +..  ||.+-++..+.
T Consensus       177 ---------Ga--dQf---d~~~~~~~~~--------~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~--~w~lgf~i~~~  232 (571)
T KOG1237|consen  177 ---------GA--DQF---DELDPVEVKG--------IPSFFNWFYFSQNGGALLAQTVLVYIQDNV--GWKLGFGIPTV  232 (571)
T ss_pred             ---------cc--ccc---CccCcchhhC--------cccchhHHHHHHHHHHHHHHHHHHhhhhcc--cceeeccHHHH
Confidence                     10  000   0000111221        23456677777777767666644443 222  68888889999


Q ss_pred             hhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 011513          274 FSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGII  327 (484)
Q Consensus       274 ~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~  327 (484)
                      .|.+.+++|.+....+     +.  ++   +.-..+..+|.++.+.+.-.-...
T Consensus       233 ~~~lai~iF~~g~~~y-----~~--~~---p~gsp~t~i~~Vlvaa~~k~~~~~  276 (571)
T KOG1237|consen  233 LNALAILIFLPGFPFY-----RY--KK---PRGSPKTRIGQVLVAAAFKRKAVV  276 (571)
T ss_pred             HHHHHHHHHHcCceeE-----Ee--eC---CCCCchhHHHHHHHHHHHHHhccC
Confidence            9999999998865443     22  11   222356668888888777765433

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=92.82  E-value=9  Score=38.94  Aligned_cols=87  Identities=16%  Similarity=0.247  Sum_probs=54.5

Q ss_pred             CchhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccc
Q 011513           30 TPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGL  109 (484)
Q Consensus        30 ~~~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F  109 (484)
                      ...+...+.+-..++++|.|+ -|-..++-.+-.|...   |... .... +.|+  +|.++...+.=.+..++||+|..
T Consensus       162 ~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~---r~~~-~V~~-~~wa--ig~v~ea~law~vm~~~gwr~~l  233 (528)
T KOG0253|consen  162 ASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH---RWLL-TVMS-FFWA--IGQVFEALLAWGVMSNFGWRYLL  233 (528)
T ss_pred             CCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC---CCcc-hhHH-HHHH--HHHHHHHHHHHHHHHhhhHHHHH
Confidence            344566778888999999999 8988888888887532   2222 2222 4443  56777666654445667987654


Q ss_pred             h-hhhHHHHHHHHHHH
Q 011513          110 G-IPAFMMFLSCAMFF  124 (484)
Q Consensus       110 ~-i~~~~~~l~~i~~l  124 (484)
                      . +....|+.+...++
T Consensus       234 ~~~~~pl~~~a~f~~w  249 (528)
T KOG0253|consen  234 FTSSTPLMFAARFLVW  249 (528)
T ss_pred             HHHHhHHHHHHHHHhh
Confidence            4 44444444444343

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=92.77  E-value=2.9  Score=43.76  Aligned_cols=104  Identities=13%  Similarity=0.085  Sum_probs=73.6

Q ss_pred             chHHHHHHHHHHHHhHHHHHHhHHHHHhhccc-CchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCcCc
Q 011513          352 LSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQF-PENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDL  430 (484)
Q Consensus       352 ~s~~~li~~~~l~~igE~l~~p~~~~~~~~~a-P~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~l  430 (484)
                      .+..|....|++++++--++...-.++..... .++.|....+..+...++|+.+...+...+...-+++          
T Consensus       110 ~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~----------  179 (467)
T COG2211         110 GKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGG----------  179 (467)
T ss_pred             cchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----------
Confidence            55667778899999999888888888887774 4678899999999999999888776664443221110          


Q ss_pred             cCchhHHHHHHHHHHHHHHHHHHHHhhhcccccCCCC
Q 011513          431 NKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGD  467 (484)
Q Consensus       431 n~~~~~~~f~~la~l~~~~~i~~~~~~~~~~~~~~~~  467 (484)
                      |  +..-|+....+++++..+.++++.+..++|..+.
T Consensus       180 ~--~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~  214 (467)
T COG2211         180 D--KALGYQGTALVLGVIGVILLLFCFFNVKERVVET  214 (467)
T ss_pred             c--chhhHHHHHHHHHHHHHHHHHHHHHHhhcccCcc
Confidence            0  1123556666777777777777777777765543

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=91.76  E-value=0.16  Score=53.68  Aligned_cols=86  Identities=14%  Similarity=0.209  Sum_probs=72.1

Q ss_pred             hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeeccc-ccccchh
Q 011513           33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVS-WAWGLGI  111 (484)
Q Consensus        33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g-~~~~F~i  111 (484)
                      +.+.|++.-+++++..|...+...++.++..|++++      ..+|++|...-...+.+||++.+.+.+..| -+++|+.
T Consensus       379 ~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e------~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~  452 (477)
T PF11700_consen  379 SPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGRE------AEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLF  452 (477)
T ss_pred             cHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHH
Confidence            444577777899999999999999999999997532      569999999999999999999999887665 7888887


Q ss_pred             hhHHHHHHHHHHH
Q 011513          112 PAFMMFLSCAMFF  124 (484)
Q Consensus       112 ~~~~~~l~~i~~l  124 (484)
                      -.+.+++++++++
T Consensus       453 l~~lf~~gl~ll~  465 (477)
T PF11700_consen  453 LLVLFLIGLILLF  465 (477)
T ss_pred             HHHHHHHHHHHHh
Confidence            7777777776654

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=91.37  E-value=0.0028  Score=66.10  Aligned_cols=61  Identities=20%  Similarity=0.147  Sum_probs=53.2

Q ss_pred             hHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhh
Q 011513          353 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMV  413 (484)
Q Consensus       353 s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~  413 (484)
                      +.++++...++.|+|-....+....++.+.+|++.||.+.++......+|..++..+...+
T Consensus       101 ~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~  161 (451)
T PF00083_consen  101 NFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIV  161 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            5667777889999999999999999999999999999999999999999998887765443

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=91.13  E-value=4  Score=42.15  Aligned_cols=25  Identities=16%  Similarity=-0.031  Sum_probs=20.9

Q ss_pred             ccccchhhHHHHHHHHHHHhHHHHh
Q 011513          268 AASYAIFSMLGLTIWIPIYDRIIVP  292 (484)
Q Consensus       268 ~~~~~~~n~~~iii~~pl~~~~~~p  292 (484)
                      .+.+.+.|.+.-++++|+++.+.++
T Consensus        45 iG~i~s~~~~~~l~~qp~~G~i~Dk   69 (412)
T PF01306_consen   45 IGIIFSAGSLFALLAQPVYGFISDK   69 (412)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHhcch
Confidence            3677889999999999999987654

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK09848 glucuronide transporter; Provisional

Probab=90.48  E-value=5.6  Score=41.36  Aligned_cols=49  Identities=8%  Similarity=0.005  Sum_probs=33.4

Q ss_pred             hHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCc-hhhhhHHhhHHHHHHH
Q 011513          353 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPE-NMRSIGGSLAFVGFAI  401 (484)
Q Consensus       353 s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~-~~~g~~~gl~~l~~~i  401 (484)
                      ..+|....+++.+++..+..+...+......+. +.|+...+.-....++
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~  157 (448)
T PRK09848        108 KVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASL  157 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHH
Confidence            456777778888888888887777776655544 5677776665544343

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=90.43  E-value=12  Score=39.71  Aligned_cols=54  Identities=15%  Similarity=-0.015  Sum_probs=44.2

Q ss_pred             HHHHhHHHHHHh----HHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513          362 SLIGFSEAFTII----AEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR  415 (484)
Q Consensus       362 ~l~~igE~l~~p----~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~  415 (484)
                      ++.-.+|+..+.    .-+.++.+....+...+.-++..+..++|.++|+.+...+..
T Consensus       148 lfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  148 LFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344456665433    458999999999999999999999999999999999888765

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=89.43  E-value=6.1  Score=40.58  Aligned_cols=81  Identities=10%  Similarity=0.005  Sum_probs=52.3

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhccc
Q 011513          304 ITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQF  383 (484)
Q Consensus       304 ~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~a  383 (484)
                      .+...|+.+..+++++|+++.++.+.                        +++-+...++.+++-.+...+-+.+.... 
T Consensus        86 v~y~~Ri~~~~~l~~~g~l~va~~~~------------------------v~~~l~Gv~las~ssg~GE~tfL~lt~~y-  140 (402)
T PF02487_consen   86 VPYWIRILICVALSAAGMLLVAFSPS------------------------VWVRLLGVVLASLSSGLGEVTFLSLTHFY-  140 (402)
T ss_pred             ccchHHHHHHHHHHHHHHhheeeccc------------------------hhHHHHHHHHHhhhhhhhHHHHHHHHHhc-
Confidence            56788999999999999998766421                        22223333444444444446666665443 


Q ss_pred             CchhhhhHHhhHHHHHHHHHHHHHHHhHhh
Q 011513          384 PENMRSIGGSLAFVGFAISNYLNGFLISMV  413 (484)
Q Consensus       384 P~~~~g~~~gl~~l~~~iG~~lg~~l~~~~  413 (484)
                      |+    ...+.|...++.++.+|+..-...
T Consensus       141 ~~----~~l~~wssGTG~aGl~Ga~~y~~l  166 (402)
T PF02487_consen  141 GK----SSLSAWSSGTGGAGLVGALYYLGL  166 (402)
T ss_pred             Cc----cccccccCCcChhhHHHHHHHHHH
Confidence            32    346778888999999888765444

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=87.97  E-value=1.9  Score=45.13  Aligned_cols=120  Identities=18%  Similarity=0.175  Sum_probs=88.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCch
Q 011513          307 LQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPEN  386 (484)
Q Consensus       307 ~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~  386 (484)
                      .+-+.+|-++.++|.++++..+.                      .+...+....+++++|-.+.-|...++..++-|++
T Consensus        92 ~~tI~lGail~~iGh~~L~~~~~----------------------~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~  149 (498)
T COG3104          92 RRTIVLGAILMAIGHLVLAISSV----------------------SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKD  149 (498)
T ss_pred             hHHHHHHHHHHHHHHHHHhcccc----------------------ccccHHHHHHHHHHhccccccccHHHHHHHhcCCC
Confidence            35588999999999998877420                      11223455667778999999999888888876653


Q ss_pred             h--hhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCcCccCchhHHHHHHHHHHHHHHHHHHHHhhhcccccC
Q 011513          387 M--RSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKG  464 (484)
Q Consensus       387 ~--~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~i~~~~~~~~~~~~~  464 (484)
                      -  |-...++++...++|+++++.+.+.+..-             .+   ...-|.+.++-+.+.++.|++.-|+++...
T Consensus       150 DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~-------------~g---~~~gF~~aavGm~~gl~~f~~~~r~~~~~~  213 (498)
T COG3104         150 DPRRDGGFTLFYMGINIGSLIAPIITGLLAIN-------------YG---WHVGFGLAAVGMIIGLVIFLLGRRHVKGIG  213 (498)
T ss_pred             CcccCCCccEEEEEeehHHHHHHHHHHHHHHh-------------hC---HHHHHHHHHHHHHHHHHHHHHccchhcCCC
Confidence            2  44567778888899999999999887531             11   345777777888888888888888886664

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=87.59  E-value=0.52  Score=48.60  Aligned_cols=86  Identities=13%  Similarity=0.079  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHh-hhHHHHHHhhhheeeeeccccc------c
Q 011513           35 AFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFT-FTFAMMISLTVIVYVQSDVSWA------W  107 (484)
Q Consensus        35 ~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~-iNiG~~i~~~l~~~l~~~~g~~------~  107 (484)
                      ....++..+-|+..|.+......++.+..|++.   |   .++-+++... .-+|..+|..++|++.+++|-+      .
T Consensus       302 ~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~---~---at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~  375 (400)
T PF03825_consen  302 ALQLLGQLLHGLTFGLFHAASVRYIDRIAPPEL---R---ATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSA  375 (400)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccc---h---HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHH
Confidence            334445567899999999999999999998753   2   3344444443 4589999999999999876644      4


Q ss_pred             cchhhhHHHHHHHHHHHhc
Q 011513          108 GLGIPAFMMFLSCAMFFLG  126 (484)
Q Consensus       108 ~F~i~~~~~~l~~i~~l~~  126 (484)
                      .|.++++..++..+++++.
T Consensus       376 ~~~v~a~~~~~~~~~f~~~  394 (400)
T PF03825_consen  376 VFLVFAVMALVILVLFVIL  394 (400)
T ss_pred             HHHHHHHHHHHHHHHHHhh
Confidence            5666666666666666543

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=86.73  E-value=46  Score=35.16  Aligned_cols=52  Identities=17%  Similarity=0.019  Sum_probs=37.5

Q ss_pred             HHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHH-HHHHHHHHHh
Q 011513          359 PQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFA-ISNYLNGFLI  410 (484)
Q Consensus       359 ~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~-iG~~lg~~l~  410 (484)
                      .+.++.-.++--..-+.-|.++...+++.|...-+..-...+ +|-.+|+.+-
T Consensus       381 ~~~v~~k~~kYsl~dp~kEmly~pld~e~K~K~Ka~iD~v~~r~Gks~gs~i~  433 (472)
T TIGR00769       381 IQNILSKSTKYSLFDATKEMAYIPLDEEQKVKGKAAIDVVAARLGKSGGALIQ  433 (472)
T ss_pred             HHHHHHHHhhhccccHHHHHhcccCCHHHHHHhHhhhhhhhhhhhhHHHHHHH
Confidence            366677777777777888999999999999988776654333 5555555443

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=86.47  E-value=23  Score=37.25  Aligned_cols=49  Identities=12%  Similarity=-0.029  Sum_probs=41.4

Q ss_pred             HHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513          367 SEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR  415 (484)
Q Consensus       367 gE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~  415 (484)
                      +-..+...+.+++++....+.|....|+...+.+.+..+++.+++...+
T Consensus       125 ~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~  173 (463)
T KOG2816|consen  125 GFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVK  173 (463)
T ss_pred             chhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            3345566778899999999999999999999999999999999887654

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=86.10  E-value=18  Score=37.85  Aligned_cols=85  Identities=13%  Similarity=0.153  Sum_probs=50.1

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhccc
Q 011513          304 ITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQF  383 (484)
Q Consensus       304 ~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~a  383 (484)
                      .+...|+..++++..+.+++....-.       .+.         ......+..+...++.|++..+...+...++.. -
T Consensus        72 i~~~~Ri~~~lv~~~~~~~~~~~l~~-------~~~---------~~~~~f~~~~~~v~~~g~~~~~~q~s~~gla~~-f  134 (437)
T TIGR00939        72 IPVTVRLLGGLVILLVVVILVMVLVK-------VQT---------SETGFFVTTMASVVIINSGMALLQGSLFGLAGV-F  134 (437)
T ss_pred             cCccchhHHHHHHHHHHHHHHhheee-------ecC---------CcchHHHHHHHHHHHHHhhhhhhcccchhhccc-C
Confidence            56677888887765555544433211       000         011233334445577888988888888888875 4


Q ss_pred             CchhhhhHHhhHHHHHHHHHHHHHHH
Q 011513          384 PENMRSIGGSLAFVGFAISNYLNGFL  409 (484)
Q Consensus       384 P~~~~g~~~gl~~l~~~iG~~lg~~l  409 (484)
                      |++    +++.+...+++++.++..+
T Consensus       135 p~~----~~~a~~~G~g~aGv~~s~~  156 (437)
T TIGR00939       135 PST----YSSAVMSGQGLAGVLTSLA  156 (437)
T ss_pred             CHH----HHHHHHhcchhHHHHHHHH
Confidence            433    4455566677777776555

>TIGR00788 fbt folate/biopterin transporter

Probab=84.47  E-value=19  Score=37.91  Aligned_cols=58  Identities=12%  Similarity=0.044  Sum_probs=41.7

Q ss_pred             HHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhh---HHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513          357 LIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSI---GGSLAFVGFAISNYLNGFLISMVHR  415 (484)
Q Consensus       357 li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~---~~gl~~l~~~iG~~lg~~l~~~~~~  415 (484)
                      .+...++.+++.....+..-.++.+..+ +.++.   .+...+...++|..+|+.+++...+
T Consensus       123 ~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~  183 (468)
T TIGR00788       123 AAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLD  183 (468)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence            3335678899999999999999999888 44443   3444444456888888888887653

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=83.28  E-value=65  Score=34.01  Aligned_cols=45  Identities=11%  Similarity=-0.050  Sum_probs=39.3

Q ss_pred             HHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513          371 TIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR  415 (484)
Q Consensus       371 ~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~  415 (484)
                      ++-.-++++.+....+.-.+..++..+..++|..+|+.+...+..
T Consensus       146 vS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~  190 (472)
T TIGR00769       146 LSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK  190 (472)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334678999999999999999999999999999999998877653

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=80.82  E-value=11  Score=37.87  Aligned_cols=102  Identities=9%  Similarity=0.030  Sum_probs=62.5

Q ss_pred             CCCCCchhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHH-HhhhHHHHHHhhhheeeeeccc
Q 011513           26 CPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYY-FTFTFAMMISLTVIVYVQSDVS  104 (484)
Q Consensus        26 ~~~~~~~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y-~~iNiG~~i~~~l~~~l~~~~g  104 (484)
                      |.+-...+...+++|+++-|+++......--+-...+..+++-+ ++.+..-|...- +...+-++.+.+++-++.+..+
T Consensus       113 cl~k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~-~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~  191 (354)
T PF05631_consen  113 CLTKHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFP-QEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFG  191 (354)
T ss_pred             HHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhC
Confidence            33334456889999999999999998887766555554433211 122344444333 2222334445555555555554


Q ss_pred             c--cccchhhhHHHHHHHHHHHhccc
Q 011513          105 W--AWGLGIPAFMMFLSCAMFFLGSR  128 (484)
Q Consensus       105 ~--~~~F~i~~~~~~l~~i~~l~~~~  128 (484)
                      .  ...|..+.+..+++.++....++
T Consensus       192 ~g~vaPF~~a~~~l~~~~~~I~~~W~  217 (354)
T PF05631_consen  192 FGPVAPFDAAIVLLAVAAVLILKTWP  217 (354)
T ss_pred             CCCcchHHHHHHHHHHHHHHHHhccc
Confidence            4  78899998888888876654333

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=80.75  E-value=15  Score=37.55  Aligned_cols=114  Identities=13%  Similarity=0.232  Sum_probs=60.3

Q ss_pred             hhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCc-c
Q 011513          273 IFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAIS-S  351 (484)
Q Consensus       273 ~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~  351 (484)
                      .-+...=++..|++|.+   ..+++ +|++.+-.+....+|+++..++..+-             .+.  .++...++ .
T Consensus        74 y~P~sLKllWaPiVDs~---y~k~~-GrrksWvvp~q~llG~~mllLs~~v~-------------~~~--g~ng~~p~v~  134 (510)
T KOG3574|consen   74 YWPFSLKLLWAPIVDSV---YSKRF-GRRKSWVVPCQYLLGLFMLLLSYLVD-------------RGL--GGNGGLPNVV  134 (510)
T ss_pred             hhHHHHHHHHHhhhHHH---HHHhh-ccccceeeehHHHHHHHHHHHhhCCC-------------ccc--ccCCCCcchH
Confidence            33444568899999986   23444 45556777788888888776655331             111  01111111 1


Q ss_pred             chHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHH
Q 011513          352 LSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFL  409 (484)
Q Consensus       352 ~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l  409 (484)
                      .-.||+.+.-++.+.=+    ++.-..+-..--++.-|-+..........|.++|..+
T Consensus       135 ~lt~~f~LLnflaAtQD----IAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~i  188 (510)
T KOG3574|consen  135 ALTLLFLLLNFLAATQD----IAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVV  188 (510)
T ss_pred             HHHHHHHHHHHHHhhhh----hhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcce
Confidence            11223333333333333    4444444444445555667777667777777776544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	484
2xut_A	524	Crystal Structure Of A Proton Dependent Oligopeptid		4e-13

>pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 85/356 (23%), Positives = 155/356 (43%), Gaps = 32/356 (8%)
Query: 37  LFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVI 96
            +TGL L+ +G+GGI+P   +F  DQF+ + +S  Q     F+ +YFT  F    +   +
Sbjct: 112 FYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQ---KAFDMFYFTINFGSFFASLSM 168
Query: 97  VYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPE-GSPLASTVQVFVAAIKKRH 155
             +  +   A   GIP  +MF++   F+LG + Y  + PE   P      +  A + K  
Sbjct: 169 PLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVE 228
Query: 156 LKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSM 215
            K      L L   +        +P  G    L  A ++         G+++   R    
Sbjct: 229 GKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLV--MGFVGAGASLQLERARKS 286
Query: 216 Q---KVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYA 272
                V+ V+ ++R++ ++A    ++    Q+ +  +   LQ++  V    F+ PA   A
Sbjct: 287 HPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWI---LQANDMVKPQWFE-PAMMQA 342
Query: 273 IFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRR 332
           +  +L + + IP  + ++ P ++R+  K   +T L++M  G+ +   + I+ G I+    
Sbjct: 343 LNPLL-VMLLIPFNNFVLYPAIERMGVK---LTALRKMGAGIAITGLSWIVVGTIQ---- 394
Query: 333 SLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMR 388
                    L    G  S+LS  W I   +L+ F E       +EF Y Q P+ M+
Sbjct: 395 ---------LMMDGG--SALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMK 439

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	484
2xut_A	524	Proton/peptide symporter family protein; transport	5e-95
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	1e-05

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524

 Score =  296 bits (759), Expect = 5e-95
 Identities = 87/441 (19%), Positives = 168/441 (38%), Gaps = 33/441 (7%)

Query: 31  PWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMM 90
              +   +TGL L+ +G+GGI+P   +F  DQF+ + +S  Q     F+ +YFT  F   
Sbjct: 106 EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQ---KAFDMFYFTINFGSF 162

Query: 91  ISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAA 150
            +   +  +  +   A   GIP  +MF++   F+LG + Y  + PE       + V  +A
Sbjct: 163 FASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSA 222

Query: 151 IKKRHLKLPEEPWLT-LHNHIPKNCINSKLPHTGQFRCLDKAAIMTPED-QIKSDGSAIN 208
           +  +         +  L   +        +P  G    L  A ++        +      
Sbjct: 223 LLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLER 282

Query: 209 PWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPA 268
             +      V+ V+ ++R++ ++A    ++   +  Q    +  LQ++  V         
Sbjct: 283 ARKSHPDAAVDGVRSVLRILVLFALVTPFWS--LFDQKASTW-ILQANDMVK--PQWFEP 337

Query: 269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIE 328
           A     + L + + IP  + ++ P ++R+  K   +T L++M  G+ +   + I+ G I 
Sbjct: 338 AMMQALNPLLVMLLIPFNNFVLYPAIERMGVK---LTALRKMGAGIAITGLSWIVVGTI- 393

Query: 329 DKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMR 388
                         +      S+LS  W I   +L+ F E       +EF Y Q P+ M+
Sbjct: 394 --------------QLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMK 439

Query: 389 SIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLL 448
               S   +   + N         V        T   +   ++      F++  A   +L
Sbjct: 440 GTIMSFWTLSVTVGNLWVLLANVSV---KSPTVTEQIVQTGMSVTAFQMFFF--AGFAIL 494

Query: 449 NFGFFLLCAKWYKYKGSGDGA 469
               F L A+ Y+ +     A
Sbjct: 495 AAIVFALYARSYQMQDHYRQA 515

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 63/395 (15%), Positives = 137/395 (34%), Gaps = 66/395 (16%)

Query: 31  PWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMM 90
           P+  + LF  + L++IG G ++P         ++ +      G    F+ + F       
Sbjct: 105 PFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAG----FSIFVFGINLGAF 160

Query: 91  ISLTVIVYVQSDVSWAWGLGIPAF------MMFLSCAMFFLGSRLYAKVKP----EGSPL 140
           I+  ++   Q    +     + A       +++       L         P    E  PL
Sbjct: 161 IAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPL 220

Query: 141 ASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQI 200
              V + VA      + +     L   N +P                     ++T    +
Sbjct: 221 LVKVSLAVAGF----IAIIVVMNLVGWNSLP-----------------AYINLLTI---V 256

Query: 201 KSDGSAINPWRLSSMQKV--EEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRR 258
                      + S  KV   E   ++  IP++ +A++++    ++Q  VV  A  +  R
Sbjct: 257 AIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAI--EEQGSVVL-ATFAAER 313

Query: 259 VGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAI 318
           V ++ F  P + +   +     ++I +Y            K +   +   + A+G++ A 
Sbjct: 314 VDSSWF--PVSWFQSLN----PLFIMLYTPFFAWLWTAWKKNQ--PSSPTKFAVGLMFAG 365

Query: 319 FTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEF 378
            + ++          +A+   +      G    +S LWL+   +L+   E       +  
Sbjct: 366 LSFLL----------MAIPGALY-----GTSGKVSPLWLVGSWALVILGEMLISPVGLSV 410

Query: 379 YYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMV 413
             K  P+   S   S+ F+  ++ + LN  L+++ 
Sbjct: 411 TTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLY 445

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	484
2xut_A	524	Proton/peptide symporter family protein; transport	99.88
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.84
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.52
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.23
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.08
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.82
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.74
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	98.51
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	98.48
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.27
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.13
2xut_A	524	Proton/peptide symporter family protein; transport	98.13
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	96.86
2cfq_A	417	Lactose permease; transport, transport mechanism,	92.97

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.88  E-value=1.7e-22  Score=213.00  Aligned_cols=399  Identities=20%  Similarity=0.296  Sum_probs=231.7

Q ss_pred             hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhh
Q 011513           33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP  112 (484)
Q Consensus        33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~  112 (484)
                      +...+++++++.++|.|+..|+..++++|++++++   |....+.|++++.+.++|.+++|.+++++.++.||++.|++.
T Consensus       108 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~  184 (524)
T 2xut_A          108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN---KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIP  184 (524)
T ss_dssp             CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT---TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence            56778999999999999999999999999998643   223467888999999999999999999999889999999999


Q ss_pred             hHHHHHHHHHHHhccceeeecCCCCCchhhHHHHHHHHHHhccccCCCCCccccccCCCccccCCCCCCCCccccccccc
Q 011513          113 AFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAA  192 (484)
Q Consensus       113 ~~~~~l~~i~~l~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~  192 (484)
                      ++..+++.+.++..++.+++.+|++++.....+.+..+.+++..+.+ ... ................+.+....+..+.
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (524)
T 2xut_A          185 GVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKG-NIG-LVLALIGGVSAAYALVNIPTLGIVAGLC  262 (524)
T ss_dssp             HHHHHHHHHHHHSSSSSCCCCC--------------------CTTHH-HHH-HHHHHHHHHHHHHTGGGTTTTCSSHHHH
T ss_pred             HHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccC-ccc-hhhhhhhhhhhhhhhcccchhhhhhhhh
Confidence            98888877776655554433333333222222222222222110000 000 0000000000000000000000000000


Q ss_pred             ccCCccccccCCCCCCCc-------ccCcchhHHHHHHhHhhHHHHHHHHHHHHHHhchhhHHHHHHHhcCCCCCCcccc
Q 011513          193 IMTPEDQIKSDGSAINPW-------RLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFK  265 (484)
Q Consensus       193 i~~~~~~~~~~g~~~~~~-------~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~~~~~~~~g~~g~~  265 (484)
                      +..... .+..  ...+|       +..++.+.+++|+.+...+++.....++..+.|..+.+..+..+++...    + 
T Consensus       263 ~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-  334 (524)
T 2xut_A          263 CAMVLV-MGFV--GAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ----W-  334 (524)
T ss_dssp             HHHHHH-HHHH--HTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS----S-
T ss_pred             hhhhhh-hccc--ccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe----e-
Confidence            000000 0000  00011       0011112345566666777778888888888888887766666655331    1 


Q ss_pred             ccccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCccccc
Q 011513          266 IPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQR  345 (484)
Q Consensus       266 i~~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~  345 (484)
                      ++.+.+..++.+..++..|+.+++..|.++|..   +++++.+++.+|+++.+++++..++.+..+     .        
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----~--------  398 (524)
T 2xut_A          335 FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMG---VKLTALRKMGAGIAITGLSWIVVGTIQLMM-----D--------  398 (524)
T ss_dssp             SCHHHHHTTSGGGHHHHGGGTTTC---------------CCHHHHHTHHHHHHHHHHTTTTTTTTT-----T--------
T ss_pred             ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcC---CCCChHHHHHHHHHHHHHHHHHHHHHHHHh-----c--------
Confidence            356777888888899999999988767666542   235677788899999988888766543210     0        


Q ss_pred             CCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCC
Q 011513          346 RGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDW  425 (484)
Q Consensus       346 ~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w  425 (484)
                        .....+.+|+++.+++.++++.+..+...+++.+.+|+++||.++|+++...++|+.+|+.+.+.+.+.++    .+|
T Consensus       399 --~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~----~~~  472 (524)
T 2xut_A          399 --GGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV----TEQ  472 (524)
T ss_dssp             --TTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH----HHH
T ss_pred             --CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc----ccc
Confidence              01235677888999999999999999999999999999999999999999999999999999988764321    123


Q ss_pred             CCc-CccCchhHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCC
Q 011513          426 LPE-DLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDG  468 (484)
Q Consensus       426 ~~~-~ln~~~~~~~f~~la~l~~~~~i~~~~~~~~~~~~~~~~~  468 (484)
                      .++ +++.  ..+.|++.+++++++.++++++.+++++++++++
T Consensus       473 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  514 (524)
T 2xut_A          473 IVQTGMSV--TAFQMFFFAGFAILAAIVFALYARSYQMQDHYRQ  514 (524)
T ss_dssp             HHHHHSCH--HHHHHHHHHHHHHHHHHHHC--------------
T ss_pred             cccccccc--cccHHHHHHHHHHHHHHHHHHHHHHhccchhhhh
Confidence            221 1221  1233778888888888888888888776655443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.84  E-value=1.3e-19  Score=189.22  Aligned_cols=357  Identities=15%  Similarity=0.206  Sum_probs=228.2

Q ss_pred             hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhh
Q 011513           33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP  112 (484)
Q Consensus        33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~  112 (484)
                      +...+++++++.++|.|...|+..++++|++++++    +.+..++++++.+.++|.+++|.+++++.++.||++.|.+.
T Consensus       107 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~----~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~  182 (491)
T 4aps_A          107 GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHD----RRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLA  182 (491)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCT----THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccc----ccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            45678899999999999999999999999998643    22467899999999999999999999999989999999999


Q ss_pred             hHHHHHHHHHHHhccceeeecC--CCCCch--hhHHHHHHH--------------HHHhccccCCCCCccccccCCCccc
Q 011513          113 AFMMFLSCAMFFLGSRLYAKVK--PEGSPL--ASTVQVFVA--------------AIKKRHLKLPEEPWLTLHNHIPKNC  174 (484)
Q Consensus       113 ~~~~~l~~i~~l~~~~~~~~~~--p~~~pl--~~~~~vl~~--------------a~~~~~~~~~~~~~~~~~~~~~~~~  174 (484)
                      ++..+++++++++..+++.+++  +..++.  ....+....              ........         ++      
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~---------~~------  247 (491)
T 4aps_A          183 AIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNS---------LP------  247 (491)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCC---------TT------
T ss_pred             HHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcc---------cc------
Confidence            8888888777655444332211  111111  111110000              00000000         00      


Q ss_pred             cCCCCCCCCcccccccccccCCccccccCCCCCCCcccCcchhHHHHHHhHhhHHHHHHHHHHHHHHhchhhHHHHHHHh
Q 011513          175 INSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQ  254 (484)
Q Consensus       175 ~~~~~~~~~~~~~l~~a~i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~~~  254 (484)
                              +.................      ...|+. ......++++.....++++....++..+.+..+.+..+..+
T Consensus       248 --------~~~~~~~~~~~~~~~~~~------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (491)
T 4aps_A          248 --------AYINLLTIVAIAIPVFYF------AWMISS-VKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAE  312 (491)
T ss_dssp             --------HHHHHHHHHHHHHHHHHH------HHHC-------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHH
T ss_pred             --------cchhhhhHHHHHHHHHHH------HHHhhc-ccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence                    000000000000000000      000000 00112445666667888888889999998888765444432


Q ss_pred             -cCCCCCCccccccccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011513          255 -SDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRS  333 (484)
Q Consensus       255 -~~~~~g~~g~~i~~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~  333 (484)
                       .+...      .+.+.+..++.+..++..++.+++.    +|+++|  .+....++.+|+++.+++++...+.....  
T Consensus       313 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~----~r~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  378 (491)
T 4aps_A          313 RVDSSW------FPVSWFQSLNPLFIMLYTPFFAWLW----TAWKKN--QPSSPTKFAVGLMFAGLSFLLMAIPGALY--  378 (491)
T ss_dssp             SCCCSS------SCSGGGTTHHHHHHHHHHHHHHHHH----HHTTTC-----CHHHHHHHHHHHHHHHTTTHHHHHHC--
T ss_pred             HhccCc------cCHHHHhccchHHHHHHHHHHHHHH----HHHhcc--CCCchHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence             33221      4577888999999999999988863    454433  35667889999999999998887765320  


Q ss_pred             hhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhh
Q 011513          334 LALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMV  413 (484)
Q Consensus       334 ~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~  413 (484)
                           +        .....+.+|+++.+++.++|+.+..|...+++.+..|++.||.++|+++....+|..+++.+.+.+
T Consensus       379 -----~--------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~  445 (491)
T 4aps_A          379 -----G--------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLY  445 (491)
T ss_dssp             -----C--------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGG
T ss_pred             -----C--------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 0        012456778889999999999999999999999999999999999999999999999999998876


Q ss_pred             cccccCCCCCCCCCcCccCchhHHHHHHHHHHHHHHHHHHHHhhhcccccCCCC
Q 011513          414 HRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGD  467 (484)
Q Consensus       414 ~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~i~~~~~~~~~~~~~~~~  467 (484)
                      .+..                 ....|..+++++++..++++++.++.+++.+++
T Consensus       446 ~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  482 (491)
T 4aps_A          446 NAKS-----------------EVAYFSYFGLGSVVLGIVLVFLSKRIQGLMQGV  482 (491)
T ss_dssp             GGSS-----------------TTHHHHHTHHHHHHHHHHHHHC-----------
T ss_pred             hccc-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            5321                 235677788888888887777777776654443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.52  E-value=1.8e-13  Score=140.37  Aligned_cols=315  Identities=10%  Similarity=-0.027  Sum_probs=181.1

Q ss_pred             hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeeccc-ccccchh
Q 011513           33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVS-WAWGLGI  111 (484)
Q Consensus        33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g-~~~~F~i  111 (484)
                      +...+++++++.++|.|...|...++++|.+++++      |.++++++..+.++|.++++.+++++.+.+| |++.|++
T Consensus       118 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~  191 (451)
T 1pw4_A          118 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYM  191 (451)
T ss_dssp             SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHH
T ss_pred             cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            45578899999999999999999999999998531      4679999999999999999999999878788 9999999


Q ss_pred             hhHHHHHHHHHHHhccceeeecCCCCCchhhHHHHHHHHHHhccccCCCCCccccccCCCccccCCCCCCCCcccccccc
Q 011513          112 PAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKA  191 (484)
Q Consensus       112 ~~~~~~l~~i~~l~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  191 (484)
                      .++..++..++.++..+.    +|+....               .+..+....  .+.+                . ...
T Consensus       192 ~~~~~~~~~~~~~~~~~~----~~~~~~~---------------~~~~~~~~~--~~~~----------------~-~~~  233 (451)
T 1pw4_A          192 PAFCAILVALFAFAMMRD----TPQSCGL---------------PPIEEYKND--YPDD----------------Y-NEK  233 (451)
T ss_dssp             HHHHHHHHHHHHHHHCCC----SSTTTCC---------------CSCTTTCCC---------------------------
T ss_pred             HHHHHHHHHHHHHhhccC----CHhhcCC---------------CChhhhccc--cccc----------------c-hhh
Confidence            888777666554332221    1111000               000000000  0000                0 000


Q ss_pred             cccCCccccccCCCCCCCcccCcchhHHHHHHhHhhHHHHHHHHHHHHHHhchhhHHHHHHHhcCCCCCCcccc-ccccc
Q 011513          192 AIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFK-IPAAS  270 (484)
Q Consensus       192 ~i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~~~~~~~~g~~g~~-i~~~~  270 (484)
                      .         ...   ..+   ++....+..+-..+..+.+.....+..+....+.+   ...+....|   +. ...+.
T Consensus       234 ~---------~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g---~~~~~~~~  292 (451)
T 1pw4_A          234 A---------EQE---LTA---KQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWS---PTYLKEVKH---FALDKSSW  292 (451)
T ss_dssp             -----------------CC---THHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHH---HHHBTTBSC---CCHHHHHH
T ss_pred             h---------hcc---ccc---ccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhcC---CCHHHHHH
Confidence            0         000   000   00000000000111222222223333222222211   222222222   11 11245


Q ss_pred             cchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHH-HHHHHHHHHHHHhhhhhccCCCcccccCCCC
Q 011513          271 YAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAI-FTMIISGIIEDKRRSLALSRPVGLEQRRGAI  349 (484)
Q Consensus       271 ~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~-i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  349 (484)
                      +.++..+..++..++.+++    .+|+.+     ...+.+.++.++.+ ++++...+.                      
T Consensus       293 ~~~~~~~~~~~~~~~~g~l----~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~----------------------  341 (451)
T 1pw4_A          293 AYFLYEYAGIPGTLLCGWM----SDKVFR-----GNRGATGVFFMTLVTIATIVYWMN----------------------  341 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHH----HHHTST-----TCHHHHHHHHHHHHHHHHHHTTSC----------------------
T ss_pred             HHHHHHHHHHHHHHHHHHH----HHHHhc-----CCchhHHHHHHHHHHHHHHHHHHh----------------------
Confidence            5666666667766666664    334210     12223444444443 444433221                      


Q ss_pred             ccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHH-HHHHHHHHhHhhcccccCCCCCCCCCc
Q 011513          350 SSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAI-SNYLNGFLISMVHRFTKGASTGDWLPE  428 (484)
Q Consensus       350 ~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~i-G~~lg~~l~~~~~~~~~~~~~~~w~~~  428 (484)
                      ...+.++.+...++.|++.....+....++.+..|++.||.++|+++....+ |..+++.+.+.+.+..      +    
T Consensus       342 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~------g----  411 (451)
T 1pw4_A          342 PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF------G----  411 (451)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS------C----
T ss_pred             cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc------C----
Confidence            0124555666677888888888888889999999999999999999999999 9999999998876432      1    


Q ss_pred             CccCchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 011513          429 DLNKGRLDYFYYLVAALGLLNFGFFLLCAKW  459 (484)
Q Consensus       429 ~ln~~~~~~~f~~la~l~~~~~i~~~~~~~~  459 (484)
                            +...|++.++++++..+++++..++
T Consensus       412 ------~~~~~~~~~~~~~~~~~~~~~~~~~  436 (451)
T 1pw4_A          412 ------WDGGFMVMIGGSILAVILLIVVMIG  436 (451)
T ss_dssp             ------SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------cHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                  3456777777777777666655443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.23  E-value=4.5e-10  Score=114.54  Aligned_cols=263  Identities=14%  Similarity=0.049  Sum_probs=154.6

Q ss_pred             hhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeee-eccc------
Q 011513           32 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQ-SDVS------  104 (484)
Q Consensus        32 ~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~-~~~g------  104 (484)
                      .+.+.+++++++.++|.|...|...++++|.+++++      |.++++++..+.++|.++++.+++++. +..+      
T Consensus       115 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~  188 (438)
T 3o7q_A          115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDV  188 (438)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHH
T ss_pred             ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence            356788999999999999999999999999998632      356789999999999999999999987 5444      


Q ss_pred             -------------------ccccchhhhHHHHHHHHHHHhccceeeecCCCCCchhhHHHHHHHHHHhccccCCCCCccc
Q 011513          105 -------------------WAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLT  165 (484)
Q Consensus       105 -------------------~~~~F~i~~~~~~l~~i~~l~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~  165 (484)
                                         |++.|.+.++..++..++++..  +    .|+..+             ++.   . +++  
T Consensus       189 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~--~----~p~~~~-------------~~~---~-~~~--  243 (438)
T 3o7q_A          189 LDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLT--K----FPALQS-------------DNH---S-DAK--  243 (438)
T ss_dssp             HHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--C----CCCCTT-------------TCC---C-CSS--
T ss_pred             cccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH--c----CCcccc-------------ccc---c-ccc--
Confidence                               8999987766666555544331  1    111110             000   0 000  


Q ss_pred             cccCCCccccCCCCCCCCcccccccccccCCccccccCCCCCCCcccCcchhHHHHHHhH---hhHHHHHHHHHHHHHHh
Q 011513          166 LHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLI---RVIPIWASAIVYYVALV  242 (484)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~l~~a~i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~---~~l~l~~~~~~~~~~~~  242 (484)
                                                           .           +...++.+.++   .+....+....+...+.
T Consensus       244 -------------------------------------~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (438)
T 3o7q_A          244 -------------------------------------Q-----------GSFSASLSRLARIRHWRWAVLAQFCYVGAQT  275 (438)
T ss_dssp             -------------------------------------T-----------TSHHHHHHHHTTCSHHHHHHHHHHHHHHHHH
T ss_pred             -------------------------------------c-----------cchhhhHHHHHhChHHHHHHHHHHHHHHHHH
Confidence                                                 0           00001111111   11111222222222221


Q ss_pred             chhhHHHHH--HHhcCCCCCCccccccccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHH
Q 011513          243 QQQTYVVFQ--ALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFT  320 (484)
Q Consensus       243 q~~t~~~~q--~~~~~~~~g~~g~~i~~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~  320 (484)
                      ...+.....  .+....+      ....+.+..+..+..++..++..++    .+|+       ...+-+.++.++.+++
T Consensus       276 ~~~~~~~~~~~~~~~g~~------~~~~~~~~~~~~~~~~~~~~~~g~l----~~r~-------~~~~~~~~~~~~~~~~  338 (438)
T 3o7q_A          276 ACWSYLIRYAVEEIPGMT------AGFAANYLTGTMVCFFIGRFTGTWL----ISRF-------APHKVLAAYALIAMAL  338 (438)
T ss_dssp             HHHHHHHHHHHHHSTTCC------HHHHHHHHHHHHHHHHHHHHHHHHH----HHHS-------CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhccCCcc------hhHHHHHHHHHHHHHHHHHHHHHHH----HHHh-------cchHHHHHHHHHHHHH
Confidence            111111111  1111111      0113444555556666666666664    3442       2223455666666666


Q ss_pred             HHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHH
Q 011513          321 MIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFA  400 (484)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~  400 (484)
                      ++...+..                        +. +.+...++.+++.....|...++..+..|++ ++..+++.. ...
T Consensus       339 ~~~~~~~~------------------------~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~  391 (438)
T 3o7q_A          339 CLISAFAG------------------------GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTI  391 (438)
T ss_dssp             HHHHHHCC------------------------HH-HHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTT
T ss_pred             HHHHHHcC------------------------Cc-HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHH
Confidence            55544321                        11 2334457888888888999999999999988 888888766 566


Q ss_pred             HHHHHHHHHhHhhcccc
Q 011513          401 ISNYLNGFLISMVHRFT  417 (484)
Q Consensus       401 iG~~lg~~l~~~~~~~~  417 (484)
                      +|..+++.+.+.+.+..
T Consensus       392 ~g~~~~~~~~g~l~~~~  408 (438)
T 3o7q_A          392 IGGGIVTPVMGFVSDAA  408 (438)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999988876543

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.08  E-value=3e-11  Score=120.97  Aligned_cols=84  Identities=7%  Similarity=0.008  Sum_probs=72.5

Q ss_pred             hhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchh
Q 011513           32 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGI  111 (484)
Q Consensus        32 ~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i  111 (484)
                      .+...+++++.+.++|.+...|...+++.|.+++++      |.++++++..+.++|..++|.+++++.+++||++.|.+
T Consensus        86 ~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~  159 (375)
T 2gfp_A           86 SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLF  159 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHH
Confidence            356788899999999999999999999999998532      35688899999999999999999999998899999988


Q ss_pred             hhHHHHHHHH
Q 011513          112 PAFMMFLSCA  121 (484)
Q Consensus       112 ~~~~~~l~~i  121 (484)
                      .++..++..+
T Consensus       160 ~~~~~~~~~~  169 (375)
T 2gfp_A          160 LLVLCAGVTF  169 (375)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHHH
Confidence            8777666654

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.82  E-value=4e-08  Score=101.75  Aligned_cols=85  Identities=11%  Similarity=0.085  Sum_probs=64.4

Q ss_pred             chhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeec--------
Q 011513           31 PWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSD--------  102 (484)
Q Consensus        31 ~~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~--------  102 (484)
                      ..+...+++++++.|+|.|+..|....+++|..|++   +   |.....++..+..+|.+++..++..+...        
T Consensus       123 a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~---~---rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  196 (491)
T 4gc0_A          123 AGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAH---I---RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNT  196 (491)
T ss_dssp             GGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGG---G---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTT
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH---h---hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccc
Confidence            457889999999999999999999999999998853   2   45677788899999999988876555332        


Q ss_pred             ccccccchhhhHHHHHHHH
Q 011513          103 VSWAWGLGIPAFMMFLSCA  121 (484)
Q Consensus       103 ~g~~~~F~i~~~~~~l~~i  121 (484)
                      .+|++.+.+..+..++..+
T Consensus       197 ~~~~~~~~~~~~~~~~~~~  215 (491)
T 4gc0_A          197 DGWRYMFASECIPALLFLM  215 (491)
T ss_dssp             THHHHHHHTTHHHHHHHHH
T ss_pred             hhhHHHhhhhhhhhhhhhh
Confidence            3466666665555444443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.74  E-value=8.8e-09  Score=105.03  Aligned_cols=139  Identities=11%  Similarity=0.012  Sum_probs=89.2

Q ss_pred             cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513          269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA  348 (484)
Q Consensus       269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  348 (484)
                      +.+.+++.+..++..++..++    .+|.+       ..+.+.+|.++.+++++..++.                     
T Consensus       262 g~~~~~~~~~~~~~~~~~g~l----~dr~g-------~~~~l~~~~~~~~~~~~~~~~~---------------------  309 (417)
T 2cfq_A          262 GYVTTMGELLNASIMFFAPLI----INRIG-------GKNALLLAGTIMSVRIIGSSFA---------------------  309 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH----HHHHC-------HHHHHHHHHHHHHHHHHHHTTC---------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHHhc-------HHHHHHHHHHHHHHHHHHHHHh---------------------
Confidence            344556666656666666654    34432       2233556666666655443221                     


Q ss_pred             CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhh-HHHHHHHHHHHHHHHhHhhcccccCCCCCCCCC
Q 011513          349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSL-AFVGFAISNYLNGFLISMVHRFTKGASTGDWLP  427 (484)
Q Consensus       349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl-~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~  427 (484)
                         .+.++++...++.+++.....+....++.+..|++.||..+|+ ++...++|+.+++.+++.+.+..          
T Consensus       310 ---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~----------  376 (417)
T 2cfq_A          310 ---TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI----------  376 (417)
T ss_dssp             ---CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS----------
T ss_pred             ---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc----------
Confidence               1233444445566777666667778899999999999999998 57788899999999988765321          


Q ss_pred             cCccCchhHHHHHHHHHHHHHHHHHHHHhhh
Q 011513          428 EDLNKGRLDYFYYLVAALGLLNFGFFLLCAK  458 (484)
Q Consensus       428 ~~ln~~~~~~~f~~la~l~~~~~i~~~~~~~  458 (484)
                            .+...|.+.++++++..++.++..|
T Consensus       377 ------g~~~~f~~~~~~~l~~~~~~~~~~~  401 (417)
T 2cfq_A          377 ------GFQGAYLVLGLVALGFTLISVFTLS  401 (417)
T ss_dssp             ------HHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred             ------CcHHHHHHHHHHHHHHHHHHHhhhc
Confidence                  1345677777777777766655444

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=98.51  E-value=5.1e-06  Score=84.24  Aligned_cols=114  Identities=11%  Similarity=-0.012  Sum_probs=91.3

Q ss_pred             cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513          269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA  348 (484)
Q Consensus       269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  348 (484)
                      +++.+...+..++..|+.+++.    +|+       ...+-+.+|.++.+++.+.......                   
T Consensus        64 g~~~~~~~~~~~i~~~~~G~l~----dr~-------g~r~~l~~~~~~~~~~~~~~~~~~~-------------------  113 (438)
T 3o7q_A           64 GLIQSAFYFGYFIIPIPAGILM----KKL-------SYKAGIITGLFLYALGAALFWPAAE-------------------  113 (438)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHH----HHS-------CHHHHHHHHHHHHHHHHHHHHHHHH-------------------
T ss_pred             HHHHHHHHHHHHHHHHhHHHHH----HHh-------cchHHHHHHHHHHHHHHHHHHhccc-------------------
Confidence            5666777777788888877763    443       2334577888888888877644321                   


Q ss_pred             CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513          349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH  414 (484)
Q Consensus       349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~  414 (484)
                        ..+.++++...++.|+|.....+....++.+..|++.|+..+|++....++|..+++.+++.+.
T Consensus       114 --~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  177 (438)
T 3o7q_A          114 --IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_dssp             --TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             --cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              1356677888899999999999999999999999999999999999999999999999988775

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=98.48  E-value=4.3e-06  Score=85.02  Aligned_cols=144  Identities=15%  Similarity=0.064  Sum_probs=103.5

Q ss_pred             cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513          269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA  348 (484)
Q Consensus       269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  348 (484)
                      +++.++..+...+..|+.+++.    +|++       ..+-+.+|.++.+++.+..++....                  
T Consensus        65 g~~~~~~~~~~~~~~~~~G~l~----dr~g-------~r~~l~~~~~~~~~~~~~~~~~~~~------------------  115 (451)
T 1pw4_A           65 GFALSGISIAYGFSKFIMGSVS----DRSN-------PRVFLPAGLILAAAVMLFMGFVPWA------------------  115 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH----HHSC-------HHHHHHHHHHHHHHHHHHHHHCHHH------------------
T ss_pred             HHHHHHHHHHHHHHHHhHHHHH----HhcC-------chHHHHHHHHHHHHHHHHHHhhhhc------------------
Confidence            5667777777788888877753    4432       2344778888888888877662210                  


Q ss_pred             CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCc
Q 011513          349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPE  428 (484)
Q Consensus       349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~  428 (484)
                        ..+.++++...++.|++.....+...+++.+..|++.|+..+|++....++|..+++.+++.+....     ++|   
T Consensus       116 --~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-----g~w---  185 (451)
T 1pw4_A          116 --TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF-----NDW---  185 (451)
T ss_dssp             --HSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT-----CCS---
T ss_pred             --cccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccH---
Confidence              0234567778899999999999999999999999999999999999999999999999987754322     024   


Q ss_pred             CccCchhHHHHHHHHHHHHHHHHHHHHhhh
Q 011513          429 DLNKGRLDYFYYLVAALGLLNFGFFLLCAK  458 (484)
Q Consensus       429 ~ln~~~~~~~f~~la~l~~~~~i~~~~~~~  458 (484)
                             ...|++.++++++..++..+..+
T Consensus       186 -------~~~f~~~~~~~~~~~~~~~~~~~  208 (451)
T 1pw4_A          186 -------HAALYMPAFCAILVALFAFAMMR  208 (451)
T ss_dssp             -------TTCTHHHHHHHHHHHHHHHHHCC
T ss_pred             -------HHHHHHHHHHHHHHHHHHHhhcc
Confidence                   22455566666665555444433

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.27  E-value=2.2e-05  Score=80.92  Aligned_cols=143  Identities=14%  Similarity=0.131  Sum_probs=104.4

Q ss_pred             ccccchhhHHHHHHHHHHHhHHHHhhhhh-hhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccC
Q 011513          268 AASYAIFSMLGLTIWIPIYDRIIVPRLQR-LTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRR  346 (484)
Q Consensus       268 ~~~~~~~n~~~iii~~pl~~~~~~pl~~k-~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~  346 (484)
                      .+++.+...+...+..|+.+++.    +| ++       ..+-+.+|.++.+++.+..++.                   
T Consensus        56 ~~~~~~~~~~~~~~~~~~~g~l~----dr~~g-------~r~~~~~~~~~~~~~~~~~~~~-------------------  105 (491)
T 4aps_A           56 AASIMAIYASMVYLSGTIGGFVA----DRIIG-------ARPAVFWGGVLIMLGHIVLALP-------------------  105 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH----HHTSC-------HHHHHHHHHHHHHHHHHHHHSC-------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH----hcccc-------chHHHHHHHHHHHHHHHHHHHh-------------------
Confidence            35667777788888888888764    34 22       2234667777777777665432                   


Q ss_pred             CCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchh--hhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCC
Q 011513          347 GAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENM--RSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGD  424 (484)
Q Consensus       347 ~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~--~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~  424 (484)
                           .+.++++...++.|+|+....|....++.+..|++.  |+..+++++...++|..+++.+++.+.+..      +
T Consensus       106 -----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------g  174 (491)
T 4aps_A          106 -----FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA------G  174 (491)
T ss_dssp             -----CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS------C
T ss_pred             -----hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh------h
Confidence                 234566778899999999999999999999999988  888888899999999999999998875422      2


Q ss_pred             CCCcCccCchhHHHHHHHHHHHHHHHHHHHHhhhccc
Q 011513          425 WLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYK  461 (484)
Q Consensus       425 w~~~~ln~~~~~~~f~~la~l~~~~~i~~~~~~~~~~  461 (484)
                      |          ...|++.+++.++..+++.+..+++.
T Consensus       175 ~----------~~~f~~~~~~~~~~~~~~~~~~~~~~  201 (491)
T 4aps_A          175 Y----------HVAFSLAAIGMFIGLLVYYFGGKKTL  201 (491)
T ss_dssp             H----------HHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             H----------HHHHHHHHHHHHHHHHHHHHhCcccc
Confidence            3          44566666666666666665555543

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.13  E-value=1.6e-05  Score=78.98  Aligned_cols=111  Identities=14%  Similarity=0.173  Sum_probs=88.0

Q ss_pred             cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513          269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA  348 (484)
Q Consensus       269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  348 (484)
                      +++.++..+...+..|+.+++    .+|+++|       +-+.+|.++.+++.+..++.+                    
T Consensus        38 g~~~~~~~~~~~~~~~~~g~l----~dr~g~r-------~~~~~~~~~~~~~~~~~~~~~--------------------   86 (375)
T 2gfp_A           38 QSVMGAYLLTYGVSQLFYGPI----SDRVGRR-------PVILVGMSIFMLATLVAVTTS--------------------   86 (375)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHH----HTTSCCC-------CCCHHHHHHHHHHHHHHHHHH--------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHHhCCc-------hhHHHHHHHHHHHHHHHHHhc--------------------
Confidence            466677777778888887775    3454322       224577777777777766542                    


Q ss_pred             CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513          349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH  414 (484)
Q Consensus       349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~  414 (484)
                          +.++++...++.|++.....+....++.+..|++.|+..+|++....++|..+++.+++.+.
T Consensus        87 ----~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~  148 (375)
T 2gfp_A           87 ----SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLD  148 (375)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             ----cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence                35567778899999999999999999999999999999999999999999999999988765

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.13  E-value=5.4e-05  Score=78.82  Aligned_cols=143  Identities=13%  Similarity=0.116  Sum_probs=99.8

Q ss_pred             cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513          269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA  348 (484)
Q Consensus       269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  348 (484)
                      +++.+...+..++..++.+++.    +|+      ....+-+.+|.++.+++.+..++..                    
T Consensus        57 g~~~~~~~~~~~~~~~~~G~l~----dr~------~g~r~~~~~~~~~~~~~~~~~~~~~--------------------  106 (524)
T 2xut_A           57 KDVFHSFVIGVYFFPLLGGWIA----DRF------FGKYNTILWLSLIYCVGHAFLAIFE--------------------  106 (524)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHH----TTS------SCSHHHHHHHHHHHHHHHHHHHHTS--------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----HHH------hcchHHHHHHHHHHHHHHHHHHHhc--------------------
Confidence            4556666667777777777753    332      0233446677877777777665431                    


Q ss_pred             CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhh---HHHHHHHHHHHHHHHhHhhcccccCCCCCCC
Q 011513          349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSL---AFVGFAISNYLNGFLISMVHRFTKGASTGDW  425 (484)
Q Consensus       349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl---~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w  425 (484)
                         .+.++++...++.|+|+....|...+++.+..|++.|+..+++   +....++|..+++.+++.+.+..      +|
T Consensus       107 ---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~------g~  177 (524)
T 2xut_A          107 ---HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF------GA  177 (524)
T ss_dssp             ---SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS------CH
T ss_pred             ---ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------cH
Confidence               2456677788999999999999999999999999999877666   88889999999999887765321      23


Q ss_pred             CCcCccCchhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 011513          426 LPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWY  460 (484)
Q Consensus       426 ~~~~ln~~~~~~~f~~la~l~~~~~i~~~~~~~~~  460 (484)
                                ...|++.+++.++..+++.+..+++
T Consensus       178 ----------~~~f~~~~~~~~~~~~~~~~~~~~~  202 (524)
T 2xut_A          178 ----------AVAFGIPGVLMFVATVFFWLGRKRY  202 (524)
T ss_dssp             ----------HHHHHHHHHHHHHHHHHHHSSSSSC
T ss_pred             ----------HHHHHHHHHHHHHHHHHHHHhcccc
Confidence                      4556666666666655554443333

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=96.86  E-value=0.023  Score=58.02  Aligned_cols=127  Identities=10%  Similarity=-0.004  Sum_probs=83.1

Q ss_pred             cchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCc
Q 011513          271 YAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAIS  350 (484)
Q Consensus       271 ~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  350 (484)
                      +.+...+..++..++.+++    -+|+++       .+-+.++.++..++-+..++............      ......
T Consensus        60 ~~s~~~~G~~iG~~~~G~l----aDr~GR-------k~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~------~~~~~~  122 (491)
T 4gc0_A           60 CVASALIGCIIGGALGGYC----SNRFGR-------RDSLKIAAVLFFISGVGSAWPELGFTSINPDN------TVPVYL  122 (491)
T ss_dssp             HHHTHHHHHHHHHHHHHHH----HHHTCH-------HHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSS------SCCGGG
T ss_pred             HHHHHHHHHHHHHHHHHHH----HHHhcC-------HHHHHHHHHHHHHHHHHHHHHhhhhhhhcchh------HHHHHH
Confidence            3344444555555555554    344432       23366777777776666554321000000000      000011


Q ss_pred             cchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513          351 SLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH  414 (484)
Q Consensus       351 ~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~  414 (484)
                      ..+.+.++...++.|+|+....+....++.+.+|++.|+..++++.....+|..++..++....
T Consensus       123 a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~  186 (491)
T 4gc0_A          123 AGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIA  186 (491)
T ss_dssp             GGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhc
Confidence            3456778889999999999999999999999999999999999999999999999888876654

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=92.97  E-value=0.012  Score=59.33  Aligned_cols=84  Identities=7%  Similarity=0.004  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHH-HHHhhhHHHHHHhhhheeeeecccccccchhhhH
Q 011513           36 FLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNW-YYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAF  114 (484)
Q Consensus        36 ~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~-~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~~~  114 (484)
                      .+.+...+.+++.+.+.+...++..|.+|++      .+..++.+ +..+.++|.+++|.++|++.++.|+...|.+.++
T Consensus       314 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~------~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~  387 (417)
T 2cfq_A          314 EVVILKTLHMFEVPFLLVGCFKYITSQFEVR------FSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGL  387 (417)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHHHHHHSCHH------HHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHH
Confidence            4445555566666666666778888888752      13456666 3567779999999999999888899999998888


Q ss_pred             HHHHHHHHHHh
Q 011513          115 MMFLSCAMFFL  125 (484)
Q Consensus       115 ~~~l~~i~~l~  125 (484)
                      ..+++.++.+.
T Consensus       388 ~~l~~~~~~~~  398 (417)
T 2cfq_A          388 VALGFTLISVF  398 (417)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHh
Confidence            87877766543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	484
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.39
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	98.94
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.57
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	96.16

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.39  E-value=4.7e-12  Score=126.61  Aligned_cols=87  Identities=16%  Similarity=0.072  Sum_probs=71.1

Q ss_pred             hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeec-ccccccchh
Q 011513           33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSD-VSWAWGLGI  111 (484)
Q Consensus        33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~-~g~~~~F~i  111 (484)
                      +...+++++.+.++|.|...|...++++|.++++   +   |..+++++..+.++|.++++.+++++... .+|++.|.+
T Consensus       115 ~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~---~---r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~  188 (447)
T d1pw4a_         115 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK---E---RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYM  188 (447)
T ss_dssp             SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTT---H---HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHH
T ss_pred             hHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhh---c---ccccccccccccchhhhhhhhhhhhHhhhhhcccccchh
Confidence            4557888999999999999999999999999863   2   46789999999999999999988776554 579999998


Q ss_pred             hhHHHHHHHHHHHh
Q 011513          112 PAFMMFLSCAMFFL  125 (484)
Q Consensus       112 ~~~~~~l~~i~~l~  125 (484)
                      .++..++..++.+.
T Consensus       189 ~~~~~~~~~~~~~~  202 (447)
T d1pw4a_         189 PAFCAILVALFAFA  202 (447)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHH
Confidence            88777766655443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=98.94  E-value=1.2e-09  Score=106.21  Aligned_cols=116  Identities=10%  Similarity=-0.001  Sum_probs=86.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCc
Q 011513          306 ILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPE  385 (484)
Q Consensus       306 ~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~  385 (484)
                      ..+-+.++.++.+++++...+.                        .+.++++...++.+++..+..+...+++.+..|+
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~  343 (417)
T d1pv7a_         288 GKNALLLAGTIMSVRIIGSSFA------------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEV  343 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTC------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCG
T ss_pred             cccchhhhHHHHHHhhhccccc------------------------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCH
Confidence            3344666777776666655432                        3455667778899999999999999999999999


Q ss_pred             hhhhhHHhhH-HHHHHHHHHHHHHHhHhhcccccCCCCCCCCCcCccCchhHHHHHHHHHHHHHHHHHHHHhhhccc
Q 011513          386 NMRSIGGSLA-FVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYK  461 (484)
Q Consensus       386 ~~~g~~~gl~-~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~i~~~~~~~~~~  461 (484)
                      +.||..+|+. .+..++|..+++.+.+.+.+..+                ....|++.++++++..++..+..|+-+
T Consensus       344 ~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g----------------~~~~~~~~~~~~~~~~~~~~~~l~~~~  404 (417)
T d1pv7a_         344 RFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG----------------FQGAYLVLGLVALGFTLISVFTLSGPG  404 (417)
T ss_dssp             GGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHC----------------HHHHHHHHHHHHHHHHHHHHHHSCCSS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------HHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            9999999975 56778999999999888765331                345677788888877777666655443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.57  E-value=9e-07  Score=87.17  Aligned_cols=115  Identities=13%  Similarity=-0.003  Sum_probs=90.9

Q ss_pred             cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513          269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA  348 (484)
Q Consensus       269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  348 (484)
                      +++.+...+...+..|+.+++.    +|+       ...+-+.+|+++.+++.+..+++...                  
T Consensus        62 g~~~s~~~~~~~~~~~~~G~l~----Dr~-------g~r~~~~~~~~~~~~~~~~~~~~~~~------------------  112 (447)
T d1pw4a_          62 GFALSGISIAYGFSKFIMGSVS----DRS-------NPRVFLPAGLILAAAVMLFMGFVPWA------------------  112 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH----HHS-------CHHHHHHHHHHHHHHHHHHHHHCHHH------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----HHc-------CchHHHHHHHHHHHHHHhhccccchh------------------
Confidence            5667777778888888888764    443       23344678888888888877765431                  


Q ss_pred             CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513          349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH  414 (484)
Q Consensus       349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~  414 (484)
                        ..+.++++...++.++++....+....++.+..|++.|+..+|++....++|..+++.++....
T Consensus       113 --~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~  176 (447)
T d1pw4a_         113 --TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM  176 (447)
T ss_dssp             --HSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred             --hhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHh
Confidence              1345567778899999999999999999999999999999999999999999999988877654

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=96.16  E-value=0.023  Score=52.90  Aligned_cols=117  Identities=9%  Similarity=-0.057  Sum_probs=63.4

Q ss_pred             ccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCC
Q 011513          268 AASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRG  347 (484)
Q Consensus       268 ~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~  347 (484)
                      .+++.++..+..++..|+.+++.    +|+++|       +.+.++.++.+++..........                 
T Consensus        45 ~g~i~s~~~l~~~i~~~~~G~l~----Dr~grr-------~~l~~~~~~~~~~~~~~~~~~~~-----------------   96 (417)
T d1pv7a_          45 TGIIFAAISLFSLLFQPLFGLLS----DKLGLR-------KYLLWIITGMLVMFAPFFIFIFG-----------------   96 (417)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHH----HHHTTC-------THHHHHHHHHHHTHHHHHHHTHH-----------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH----HHhCch-------HHHHHHHHHHHHHHHHHHHhhhh-----------------
Confidence            36677888888888899988874    454322       23455666666666555554321                 


Q ss_pred             CCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCch--hhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513          348 AISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPEN--MRSIGGSLAFVGFAISNYLNGFLISMVHR  415 (484)
Q Consensus       348 ~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~--~~g~~~gl~~l~~~iG~~lg~~l~~~~~~  415 (484)
                         .....+......+.+.+.............+..+++  .+....+......+.+..+++.+++....
T Consensus        97 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  163 (417)
T d1pv7a_          97 ---PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT  163 (417)
T ss_dssp             ---HHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---hhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccccccccccccc
Confidence               011111222333444444333444444444433333  33345556666677777888877776653